BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018538
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVS0|PUS6_ARATH RNA pseudourine synthase 6, chloroplastic OS=Arabidopsis thaliana
GN=At4g21770 PE=2 SV=1
Length = 472
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/342 (64%), Positives = 266/342 (77%), Gaps = 10/342 (2%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNV-VLSFSSSNRNFVCESWKRHVFT 65
S T R+L APVSLLRTLAST + +++SN F SS + F C S
Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTRVTT--PLFRSNKHSPRFISSPKRFTCLS-----LL 55
Query: 66 HTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPP 124
TD+ ++ S+ GY EY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+LPP
Sbjct: 56 KTDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 115
Query: 125 LFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTF 184
L+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTF
Sbjct: 116 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 175
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDN
Sbjct: 176 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 235
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
IEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY A
Sbjct: 236 IEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRA 295
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSEGKTIFGLALMIREMV 346
L APLP+GI++HYMRP N+APRLV+E +I G L E++
Sbjct: 296 LAAAPLPIGIISHYMRPKNMAPRLVAE-DSIQGWHLCQLEVL 336
>sp|A3BN26|PUS6_ORYSJ RNA pseudourine synthase 6, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os07g0660400 PE=2 SV=1
Length = 477
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/254 (71%), Positives = 213/254 (83%)
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
P++ YP Y RLLPCP Q+ PPR+EHLV E +++I R L LPPL+VADLI FGAVY
Sbjct: 66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVY 125
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T +Q +EAGT
Sbjct: 126 YALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGT 185
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC F SRAL
Sbjct: 186 YLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRAL 245
Query: 258 GLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
GL TPL TTHQIDNC+EGCVVL++T+E+CS+FH IREK+V K YLALTTAP+ GI+TH
Sbjct: 246 GLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAPVSTGIITH 305
Query: 318 YMRPINIAPRLVSE 331
YMRPIN APRLVSE
Sbjct: 306 YMRPINRAPRLVSE 319
>sp|P57430|RLUC_BUCAI Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rluC PE=3 SV=1
Length = 314
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTH 267
FP + + +RI+ ++++KP+G +V G + + + + L L H
Sbjct: 82 FPLNHSTNLLNRILYEDSHLLIINKPSGIAVHGGS-GLNFGVIEYFRKLRPLNKFLELVH 140
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+ID T G ++LA+ + H ++REKK+KK Y+AL P
Sbjct: 141 RIDRDTSGVLILAKKRTSLVSLHEQLREKKIKKEYIALVHGLWP 184
>sp|Q8K9J8|RLUC_BUCAP Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluC PE=3 SV=1
Length = 314
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP+G +V G + I + + L L H+ID T G ++LA+ +
Sbjct: 102 LIINKPSGIAVHGGS-GINLGVIEYFRKIRPLEKFLELVHRIDRDTSGVLMLAKKRRSLL 160
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGI 314
H++IREKKV+K Y+AL P+ +
Sbjct: 161 SLHKQIREKKVQKKYIALVHGLWPLSL 187
>sp|Q28C59|RUSD4_XENTR RNA pseudouridylate synthase domain-containing protein 4 OS=Xenopus
tropicalis GN=rpusd4 PE=2 SV=1
Length = 324
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 211 CYDIDWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATF----ASRALGLTT-PLR 264
Y + S+++ V+++KP G V GG T +E S A+ A G PL+
Sbjct: 42 VYLRELKSQVVREDPELVLVNKPHGLPVHGGPT--VERSVASLLPALAKHHFGWKAEPLK 99
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G ++LART E + +RE++V ++Y AL
Sbjct: 100 LCHRLDRDTTGALILARTTEAAERVQQALREREVHRVYWAL 140
>sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rluC PE=3 SV=1
Length = 315
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFA--SRALGLTTPLRTTHQ 268
I +N+ I+ ++L+KP+G SV G + E+ +R L L H+
Sbjct: 89 IIFNNMILYEDNYFLILNKPSGMSVHSGSGINYGMIENLRILRPYNRYLDLV------HR 142
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+D T G +++A+ + H ++REKK+KK Y+AL P
Sbjct: 143 LDRDTSGVLIIAKKRSILRNLHEQLREKKIKKKYVALVHGVWP 185
>sp|Q87N15|RLUC_VIBPA Ribosomal large subunit pseudouridine synthase C OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluC PE=3 SV=1
Length = 315
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIYEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>sp|O66114|Y505_ZYMMO Uncharacterized RNA pseudouridine synthase ZMO0505 OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=ZMO0505 PE=3 SV=2
Length = 219
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++ + +++DKPAG V D AS G H++D T GC++
Sbjct: 7 RVLFIDAEAMIIDKPAGLPVTSVRDGSLSLENYLASLCFGFKRWPSIVHRLDRDTSGCLL 66
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLAL 305
LAR + + +VKK Y A+
Sbjct: 67 LARNPKMHRRLSEAFSQGQVKKCYWAI 93
>sp|Q8Z7J7|RLUC_SALTI Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhi GN=rluC PE=3 SV=1
Length = 319
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>sp|Q8FIP7|RLUC_ECOL6 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluC
PE=3 SV=1
Length = 319
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>sp|P0AA40|RLUC_SHIFL Ribosomal large subunit pseudouridine synthase C OS=Shigella
flexneri GN=rluC PE=3 SV=1
Length = 319
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>sp|P0AA39|RLUC_ECOLI Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli (strain K12) GN=rluC PE=1 SV=1
Length = 319
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>sp|Q8ZQ16|RLUC_SALTY Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluC PE=3 SV=1
Length = 319
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>sp|P59835|RLUC_HAEDU Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluC PE=3 SV=1
Length = 320
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+G V G S +F AL P L H+ID T G +++A+
Sbjct: 106 LVLNKPSGIGVHGG------SGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKK 159
Query: 283 QEYCSIFHRKIREKKVKKLYLAL 305
+ H ++REK V+K YLAL
Sbjct: 160 RSALRALHEQLREKVVQKDYLAL 182
>sp|Q8X8J3|RLUC_ECO57 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O157:H7 GN=rluC PE=3 SV=1
Length = 319
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>sp|Q9CM51|RLUC_PASMU Ribosomal large subunit pseudouridine synthase C OS=Pasteurella
multocida (strain Pm70) GN=rluC PE=3 SV=1
Length = 326
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
+I+ E +VL+KP+G +V G + + E+ T A L H++D T
Sbjct: 98 EKQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRDT 153
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
G +++A+ + H ++REK V+K YLAL
Sbjct: 154 SGILLVAKKRSALRSLHEQLREKTVQKDYLAL 185
>sp|Q8PHN2|RLUD_XANAC Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1
Length = 331
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 225 ESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
E +V+DKPAG V G D + F AL H++D T G +V+AR
Sbjct: 97 EQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALASVPRAGVVHRLDKDTSGVMVVAR 156
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
T + + ++ ++V + YLA+ L G + PI+ PR
Sbjct: 157 TVQAQTALVEQLSAREVHRQYLAVVVGALVSGGTANA--PIDRHPR 200
>sp|Q9LT72|PUS4_ARATH RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana
GN=At3g19440 PE=2 SV=1
Length = 477
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 32/129 (24%)
Query: 228 VVLDKPAGTSVGG------TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
+VL+KP G +V G + D + SC F + R H++D G +VLAR
Sbjct: 193 IVLNKPHGLAVQGGSGIKTSIDELAASCLKFDK-----SESPRLVHRLDRDCSGLLVLAR 247
Query: 282 TQEYCSIFHRKIRE--------------KKVKKLYLALTTA--PLPVGIMTHYMRPINIA 325
TQ ++ H RE K +K+ Y+AL P G ++ +R +
Sbjct: 248 TQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKV--- 304
Query: 326 PRLVSEGKT 334
+V +GK+
Sbjct: 305 --VVDDGKS 311
>sp|P59831|RLUA_HAEDU Ribosomal large subunit pseudouridine synthase A OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluA PE=3 SV=1
Length = 222
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
VV++KP+G SV G +S T + G P H++D T G ++LA ++
Sbjct: 24 VVINKPSGLLSVPGNRPEYYDSVMTRVQQRYGFAEP---AHRLDMATSGIILLALSKVAE 80
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
R+ R+++ KK Y+AL L
Sbjct: 81 KELKRQFRDREPKKHYIALLWGKL 104
>sp|Q8ZFU1|RLUC_YERPE Ribosomal large subunit pseudouridine synthase C OS=Yersinia pestis
GN=rluC PE=3 SV=1
Length = 320
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 22/120 (18%)
Query: 228 VVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP+GT+V G + + E A L H++D T G +++A+ +
Sbjct: 103 LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGVLLVAKKRS 158
Query: 285 YCSIFHRKIREKKVKKLYLALT-----------TAPLPVGIMTHYMRPINIAPRLVSEGK 333
H ++R K ++K YLAL APL IM R + ++ SEGK
Sbjct: 159 ALRSLHEQLRLKSMQKDYLALVRGQWQSHCKAIQAPLLKNIMQSGERVVKVS----SEGK 214
>sp|Q8D8G1|RLUC_VIBVU Ribosomal large subunit pseudouridine synthase C OS=Vibrio
vulnificus (strain CMCP6) GN=rluC PE=3 SV=1
Length = 315
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + +VL+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIYEDDHLLVLNKPSGTAVHGGS-----GLKFGAIEALRALRPEARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + + REK V+K Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVQKYYFAL 180
>sp|Q9CK02|RLUA_PASMU Ribosomal large subunit pseudouridine synthase A OS=Pasteurella
multocida (strain Pm70) GN=rluA PE=3 SV=1
Length = 219
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I+ + VV++KP+G SV G +S + G P H++D T G ++
Sbjct: 16 IVHYDDHFVVINKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEP---AHRLDMSTSGLIL 72
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLAL 305
A ++ R+ RE++ KK Y AL
Sbjct: 73 FALSKVADRELKRQFREREPKKHYQAL 99
>sp|P44433|RLUC_HAEIN Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluC PE=3 SV=1
Length = 322
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEY 285
++L+KP+G +V GG+ N A RAL L H++D T G +++A+ +
Sbjct: 108 IILNKPSGIAVHGGSGLNF---GVIEALRALRPEARFLELVHRLDRDTSGILLIAKKRSA 164
Query: 286 CSIFHRKIREKKVKKLYLAL 305
H ++R K V+K YLAL
Sbjct: 165 LRNLHEQLRVKTVQKDYLAL 184
>sp|P0AA38|RLUA_SHIFL Ribosomal large subunit pseudouridine synthase A OS=Shigella
flexneri GN=rluA PE=3 SV=2
Length = 219
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLA 304
V+A T+ R+ RE++ KK Y+A
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVA 98
>sp|P0AA37|RLUA_ECOLI Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli (strain K12) GN=rluA PE=1 SV=2
Length = 219
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLA 304
V+A T+ R+ RE++ KK Y+A
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVA 98
>sp|P43930|Y042_HAEIN Uncharacterized RNA pseudouridine synthase HI_0042 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_0042 PE=3 SV=1
Length = 224
Score = 38.9 bits (89), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++K G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKSEGISV--HKDQEEQGLTELVAKQLNVPK-VWLVHRLDKVTSGLLILALNAESAA 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
F R E K+ K YLAL+
Sbjct: 70 EFSRLFSEHKIHKTYLALSN 89
>sp|Q8P682|RLUD_XANCP Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rluD PE=3 SV=1
Length = 331
Score = 38.5 bits (88), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 225 ESHV-VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+ HV V+DKPAG V G D + F L H++D T G +V+A
Sbjct: 96 DDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAAVPRAGVVHRLDKDTSGVMVVA 155
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
RT + + ++ + V + YLA+ L G PI+ PR
Sbjct: 156 RTLQAQTALVEQLSARDVHRQYLAVVVGALVSGGTADA--PIDRHPR 200
>sp|Q9KQH0|RLUC_VIBCH Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluC PE=3 SV=1
Length = 315
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEY 285
++L+KP+GT+V GG+ + A A RAL L H+ID T G +++A+ +
Sbjct: 105 LILNKPSGTAVHGGSGLHF---GAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSA 161
Query: 286 CSIFHRKIREKKVKKLYLALTTA 308
+ REK V+K Y AL
Sbjct: 162 LRHLQAQFREKTVQKYYYALVMG 184
>sp|Q9PET9|RLUD_XYLFA Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain 9a5c) GN=rluD PE=3 SV=1
Length = 331
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESC 249
V G +R+ V P D I+ E VL+KPAG V G D +
Sbjct: 65 VYGGEVVRLQVVPDIRTDAVPQDIPLDILYEDEHVFVLNKPAGLVVHPGAGNPDGTLVNA 124
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
AL H++D T G +V+ART + + ++ ++V + YLA+ +
Sbjct: 125 LLHRDPALAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSA 184
Query: 310 LPVG 313
L G
Sbjct: 185 LVSG 188
>sp|Q1RJX7|RLUC_RICBR Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
bellii (strain RML369-C) GN=rluC PE=3 SV=1
Length = 301
Score = 38.5 bits (88), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I ++ + ++KPAG + GG+ N+ A + G + H++D T G ++
Sbjct: 91 LIYEDDNIIAINKPAGLATQGGSKINLSVDSALKYLNSQG--ADFKLVHRLDKETSGLLL 148
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALT 306
+A+ H +EK V+K YLA+T
Sbjct: 149 IAKNYVSSVKLHDAFKEKLVEKTYLAVT 176
>sp|Q8FL93|RLUA_ECOL6 Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluA
PE=3 SV=3
Length = 219
Score = 38.5 bits (88), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
++ + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VVLYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLA 304
V+A T+ R+ RE++ KK Y+A
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVA 98
>sp|Q8ZRV9|RLUA_SALTY Ribosomal large subunit pseudouridine synthase A OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluA PE=3 SV=3
Length = 219
Score = 38.1 bits (87), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLA 304
V+A T+ R+ RE++ KK Y+A
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVA 98
>sp|Q8Z9J5|RLUA_SALTI Ribosomal large subunit pseudouridine synthase A OS=Salmonella
typhi GN=rluA PE=3 SV=3
Length = 219
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLA 304
V+A T+ R+ RE++ KK Y+A
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVA 98
>sp|Q5XET6|PUS3_ARATH RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana
GN=At1g78910 PE=2 SV=1
Length = 478
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 208 FPRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRAL--GLTTPLR 264
+P +I + R++ +S + VL+KP V G I S A+ AL G R
Sbjct: 168 YPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGNVP-IHNSMDALAAAALSFGNDEGPR 226
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFH 290
H++D T G +V+ RT+E H
Sbjct: 227 LVHRLDRETSGLLVMGRTKESIDYLH 252
>sp|P54604|YHCT_BACSU Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus
subtilis (strain 168) GN=yhcT PE=3 SV=2
Length = 302
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS---RALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++++KPAG + D + A + + G T +R H++D T G +V A+ +
Sbjct: 93 LIINKPAGIATHPNEDGQTGTLANLIAYHYQINGETCKVRHVHRLDQDTSGAIVFAKHRL 152
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I +++ +K +K+ Y A+ L
Sbjct: 153 AHAILDQQLEKKTLKRTYTAIAEGKL 178
>sp|Q2QNM3|PUS1_ORYSJ RNA pseudourine synthase 1 OS=Oryza sativa subsp. japonica
GN=Os12g0560500 PE=2 SV=1
Length = 345
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
++ E V+DKPAG + S AT A T P L +++D T G +V
Sbjct: 86 VVFEDEWLAVVDKPAGVYCDALLSALPCSAATLGDEA---TKPNLHLANRLDRDTSGLMV 142
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLP----VGIMTHYMRPINIAPRLVSE--- 331
+ + + + E KVKK YLAL P + I + + R + A R+ +
Sbjct: 143 ITKCNKVAGKLVKAFTEHKVKKTYLALCIGYPPAWEKIKICSGHGRSKHGAWRVYAMSDV 202
Query: 332 GKTIFGLALMIREMVWKFE 350
G+++ G ++R+M +FE
Sbjct: 203 GRSLPG-GSVVRDMSTRFE 220
>sp|Q09709|YA32_SCHPO Uncharacterized protein C18B11.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC18B11.02c PE=3 SV=1
Length = 394
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 6/159 (3%)
Query: 155 RVFKEVTDPSVLSKRSSIKGKTVREAQKTF--RITHVDQIVEAGTYLRVHVHPKRFPRCY 212
+ EV + + S K +R Q +I +VD ++E G + H H P
Sbjct: 43 KTLLEVFNTEFRDRESGYYEKAIRNGQVKVNNQIGNVDTLIENGYIVSHHAHRHEPPVS- 101
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
D I+ ES+VV+DKPAG V T + + + L +++D
Sbjct: 102 --DQPVGIVHEDESYVVIDKPAGVPVHPTGRYNHNTVLHILMKENKCSL-LYPCNRLDRL 158
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
T G + +++ + + K +KK Y+A P
Sbjct: 159 TSGLMFFSKSPKAAEEMRVHMISKSLKKEYVARVIGEFP 197
>sp|P44782|RLUA_HAEIN Ribosomal large subunit pseudouridine synthase A OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluA PE=3 SV=1
Length = 219
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 221 IAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I ++H+ V++KP+G SV G +S + G P H++D T G +V
Sbjct: 16 IIYQDNHLCVVNKPSGLLSVPGNQPQYYDSAMSRVKEKFGFCEP---AHRLDMATSGIIV 72
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
A ++ R+ RE++ KK Y A+ L
Sbjct: 73 FALSKAADRELKRQFREREPKKHYQAIVWGHL 104
>sp|Q82WZ5|RLUD_NITEU Ribosomal large subunit pseudouridine synthase D OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=rluD PE=3
SV=1
Length = 344
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-FASRALGLTTPLRT--THQIDNCTEG 275
+I+ + +++DKPAG V N + + A L+ R H++D T G
Sbjct: 110 KILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPRAGIVHRLDKDTTG 169
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
+V+A+T E R+++++ VK+ YLAL L
Sbjct: 170 LLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKL 204
>sp|Q4QQT0|RUSD4_RAT RNA pseudouridylate synthase domain-containing protein 4 OS=Rattus
norvegicus GN=Rpusd4 PE=2 SV=1
Length = 377
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN---IEESCATFASRALG-LTTPLR 264
P + + RI+ + VV++KP G V G I + A G PL
Sbjct: 88 PNVLAKELSRRILHQDKDLVVINKPYGLPVHGGPGVQLCISDVLPILAKMLHGHKAEPLH 147
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT-APLP 311
H++D T G +VLA ++ R ++V+K Y A+T PLP
Sbjct: 148 LCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQVEKKYWAITVRVPLP 195
>sp|Q8IZ73|RUSD2_HUMAN RNA pseudouridylate synthase domain-containing protein 2 OS=Homo
sapiens GN=RPUSD2 PE=1 SV=2
Length = 545
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRA----LGLTTPLRTTH---QIDN 271
R++A E VV+DKP+ V C F LG L+ H ++D
Sbjct: 224 RLLAENEDVVVVDKPSSIPV--------HPCGRFRHNTVIFILGKEHQLKELHPLHRLDR 275
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
T G ++ A+T H ++R+++++K Y+ P +T
Sbjct: 276 LTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVT 320
>sp|Q9CWX4|RUSD4_MOUSE RNA pseudouridylate synthase domain-containing protein 4 OS=Mus
musculus GN=Rpusd4 PE=2 SV=1
Length = 377
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN---IEESCATFASRALG-LTTPLR 264
P + + RI+ VV++KP G V G I + A G PL
Sbjct: 88 PNVLAKELSRRILHQDNDLVVINKPYGLPVHGGPGVQLCISDVLPILAKMLHGHKAEPLH 147
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT-APLP 311
H++D T G +VLA ++ R ++V+K Y A+T PLP
Sbjct: 148 LCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQVEKKYWAITVRVPLP 195
>sp|Q92IS6|RLUC_RICCN Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=rluC PE=3
SV=1
Length = 303
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I ++ + ++KPAG + GGT N+ A G + H++D T G ++
Sbjct: 91 LIYADDNLIAINKPAGLATQGGTKINLSIDSALKYLNYKG--ADFKLVHRLDKKTSGLLL 148
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALT 306
+A+ H +EK V K Y A+T
Sbjct: 149 IAKNYLSSVKLHNAFKEKLVVKTYFAVT 176
>sp|Q87AR7|RLUD_XYLFT Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rluD PE=3
SV=1
Length = 331
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 221 IAVTESHV-VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I + HV V++KPAG V G D + AL H++D T G
Sbjct: 92 ILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKDTSGV 151
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
+V+ART + + ++ ++V + YLA+ + L G
Sbjct: 152 MVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSG 188
>sp|Q8XA10|RLUA_ECO57 Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli O157:H7 GN=rluA PE=3 SV=3
Length = 219
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYL 303
V+A T+ R+ RE+ KK Y+
Sbjct: 72 VVALTKAAERELKRQFRERVPKKQYV 97
>sp|Q69K07|PUS4_ORYSJ RNA pseudourine synthase 4, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os09g0103500 PE=2 SV=1
Length = 448
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 142 CPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT-YLR 200
CP P T+ +++ ++V V ++ SS E + R++ DQ++ +L
Sbjct: 94 CPDLP-TSLVQKLFRLRKVKKNVVTAEISSADASA--EQHRLRRVSAKDQLMPGDILFLP 150
Query: 201 VHVHP-------KRFPRCYDIDWNSRI-IAVTESHVVLDKPAGTSVGGTTDNIEESCATF 252
V++ K+F +I++ + I E+ +V++KP G V G I+ S
Sbjct: 151 VNLKESSVAEKTKKFDNRNEINFLRGLEIYKDEAIIVVNKPPGMPVQGGV-GIKNSIDVL 209
Query: 253 ASRALGLTTPL-RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
AS ++ R H++D G +VL R Q S+ H REK L
Sbjct: 210 ASMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADAL 259
>sp|P53294|PUS6_YEAST tRNA pseudouridine(31) synthase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUS6 PE=1 SV=1
Length = 404
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT----TDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
I+ ES +V+DKP+G V T + I E AL +++D T G
Sbjct: 121 IVFEDESILVIDKPSGIPVHPTGQFYQNTITELLKLHGVDAL-------PCYRLDKITSG 173
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++LA+ + + IR + + K+YLA P
Sbjct: 174 LLILAKNSQSAGEIQKSIRSRDMIKIYLARVKGRFP 209
>sp|P75485|Y292_MYCPN Uncharacterized RNA pseudouridine synthase MG209 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_292 PE=3 SV=1
Length = 309
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 171 SIKGKTVRE----AQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTES 226
S+ GK + + Q R+ HV+ E + V V P FP +D I+ E
Sbjct: 38 SVNGKKITKNGWLVQPEDRV-HVNWSEELFEKVPVEVQPYDFP----LD----ILYEDEQ 88
Query: 227 HVVLDKPAGTSVGGTTDNIEES---CATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+V++KP G T+ N ES A F P+ H++D T G ++LA+ Q
Sbjct: 89 IMVVNKPNGLISHPTSFNESESLLGAALFHCNH----QPVFLVHRLDRDTSGVIMLAKNQ 144
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPL 310
++++++ +K+ YLAL PL
Sbjct: 145 SSLLHLQKQLQQRVMKRYYLALVHFPL 171
>sp|Q8ZIK1|RLUA_YERPE Ribosomal large subunit pseudouridine synthase A OS=Yersinia pestis
GN=rluA PE=3 SV=1
Length = 206
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
I+ + H+ V++KP+G SV G ++S T R + H++D T G +
Sbjct: 2 IVLYQDKHIMVVNKPSGLLSVPGRAPENKDSVMT---RVQNDFPTAESVHRLDMATSGVI 58
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLA 304
V+A T+ R+ RE++ KK Y+A
Sbjct: 59 VVALTKAAERELKRQFREREPKKTYIA 85
>sp|P74346|Y1629_SYNY3 Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1629 PE=3 SV=1
Length = 327
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 220 IIAVTESHVVLDKPAGTSV--------GGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
I+ E ++++KPAG V G + + C A G+ P H++D
Sbjct: 100 ILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIG-GVQRP-GIVHRLDK 157
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVG 313
T G +V+A+T+ +++EK ++LY + T LPVG
Sbjct: 158 DTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVNLPVG 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,179,675
Number of Sequences: 539616
Number of extensions: 5569434
Number of successful extensions: 12090
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 12044
Number of HSP's gapped (non-prelim): 70
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)