Query 018538
Match_columns 354
No_of_seqs 267 out of 1610
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 7.1E-34 2.4E-38 276.3 13.8 170 111-323 18-192 (325)
2 1ksk_A Ribosomal small subunit 100.0 2.3E-29 8E-34 233.6 10.7 144 111-316 5-149 (234)
3 1vio_A Ribosomal small subunit 100.0 6.5E-29 2.2E-33 232.1 10.6 146 111-318 4-150 (243)
4 3dh3_A Ribosomal large subunit 99.9 2E-26 7E-31 221.3 13.6 140 111-312 8-147 (290)
5 2i82_A Ribosomal large subunit 99.9 1.4E-24 4.8E-29 199.7 13.9 103 217-322 11-116 (217)
6 1v9k_A Ribosomal large subunit 99.9 6.3E-24 2.2E-28 196.7 12.6 103 219-322 3-107 (228)
7 2oml_A Ribosomal large subunit 99.9 1.7E-22 5.9E-27 181.9 6.8 87 218-311 4-90 (189)
8 2olw_A Ribosomal large subunit 99.9 3.3E-22 1.1E-26 184.3 6.9 96 217-319 31-129 (217)
9 2gml_A Ribosomal large subunit 99.7 1.6E-17 5.4E-22 155.3 6.9 82 224-312 13-94 (237)
10 2k6p_A Uncharacterized protein 98.2 1.6E-07 5.6E-12 74.5 -0.3 73 111-227 2-83 (92)
11 1dm9_A Hypothetical 15.5 KD pr 97.6 0.00012 4E-09 62.3 7.5 51 111-205 10-61 (133)
12 1p9k_A ORF, hypothetical prote 97.6 1.4E-05 4.8E-10 61.7 0.8 49 111-202 22-71 (79)
13 1c05_A Ribosomal protein S4 de 97.3 0.00042 1.4E-08 60.6 6.4 51 111-204 52-103 (159)
14 2vqe_D 30S ribosomal protein S 97.1 0.0007 2.4E-08 61.8 6.4 51 111-204 100-151 (209)
15 3hp7_A Hemolysin, putative; st 96.9 0.0012 4E-08 63.1 5.9 51 111-204 8-61 (291)
16 2cqj_A BRMS2, U3 small nucleol 96.7 0.0012 4.1E-08 50.2 3.7 49 111-202 9-60 (71)
17 3r8n_D 30S ribosomal protein S 96.7 0.00053 1.8E-08 62.5 1.8 51 111-204 96-147 (205)
18 1k8w_A TRNA pseudouridine synt 96.6 0.0026 8.9E-08 61.8 6.6 72 225-309 25-97 (327)
19 2aus_C Pseudouridine synthase; 96.6 0.0024 8.3E-08 62.1 6.3 73 222-307 43-115 (334)
20 3bbn_D Ribosomal protein S4; s 96.6 0.00096 3.3E-08 60.6 3.1 51 111-204 90-141 (201)
21 1r3e_A TRNA pseudouridine synt 96.6 0.003 1E-07 60.9 6.3 71 225-308 3-74 (309)
22 1sgv_A TRNA pseudouridine synt 96.4 0.0039 1.3E-07 60.3 6.1 72 224-308 5-77 (316)
23 2apo_A Probable tRNA pseudouri 96.3 0.0042 1.4E-07 61.0 6.1 73 222-307 63-135 (357)
24 3u28_A H/ACA ribonucleoprotein 96.1 0.0061 2.1E-07 60.6 5.8 73 222-307 56-128 (400)
25 3j20_D 30S ribosomal protein S 95.6 0.0058 2E-07 54.6 3.1 49 111-202 104-155 (180)
26 2xzm_D Ribosomal protein S4 co 95.1 0.0078 2.7E-07 53.7 2.0 49 111-202 108-157 (181)
27 3j20_E 30S ribosomal protein S 94.3 0.1 3.6E-06 48.5 7.6 50 110-202 43-94 (243)
28 3u5c_J 40S ribosomal protein S 93.3 0.03 1E-06 50.6 1.9 49 111-202 108-159 (197)
29 3kbg_A 30S ribosomal protein S 91.6 0.29 9.8E-06 44.7 6.2 48 111-201 9-58 (213)
30 3iz6_C 40S ribosomal protein S 83.7 0.008 2.8E-07 54.3 -9.3 51 111-204 110-161 (195)
31 2xzm_W 40S ribosomal protein S 83.1 2.4 8.4E-05 39.6 6.9 52 108-202 40-95 (260)
32 3iz6_D 40S ribosomal protein S 77.6 1.5 5E-05 41.2 3.4 49 111-202 43-93 (265)
33 3u5c_E RP5, S7, YS6, 40S ribos 77.2 1.5 5.1E-05 41.1 3.3 49 111-202 43-93 (261)
34 1fm0_D Molybdopterin convertin 64.1 16 0.00054 26.9 6.0 21 172-202 55-75 (81)
35 2jan_A Tyrosyl-tRNA synthetase 63.1 8.8 0.0003 38.3 5.6 27 111-137 357-384 (432)
36 1h3f_A Tyrosyl-tRNA synthetase 59.9 15 0.00051 36.6 6.6 27 111-137 370-397 (432)
37 1jil_A Tyrrs, tyrosyl-tRNA syn 59.0 2 6.8E-05 42.8 0.0 27 111-137 354-381 (420)
38 1tyg_B YJBS; alpha beta barrel 52.6 29 0.00098 26.8 5.8 25 172-202 57-81 (87)
39 2hj1_A Hypothetical protein; s 51.9 2.7 9.1E-05 33.5 -0.4 22 172-203 63-84 (97)
40 3hvz_A Uncharacterized protein 48.5 5.8 0.0002 30.2 1.1 22 172-203 46-67 (78)
41 1ryj_A Unknown; beta/alpha pro 45.7 64 0.0022 23.3 6.5 22 172-203 44-65 (70)
42 2ktl_A Tyrosyl-tRNA synthetase 45.2 36 0.0012 29.5 5.8 27 111-137 51-78 (164)
43 2cu3_A Unknown function protei 43.5 48 0.0017 23.4 5.4 26 172-203 34-59 (64)
44 1f0z_A THis protein; ubiquitin 42.1 29 0.00098 24.8 4.0 25 172-202 36-60 (66)
45 2kl0_A Putative thiamin biosyn 41.5 34 0.0011 25.3 4.4 26 172-203 35-60 (73)
46 3po0_A Small archaeal modifier 41.0 23 0.00077 26.6 3.5 22 172-203 63-84 (89)
47 2og0_A Excisionase; protein-DN 37.7 43 0.0015 23.4 4.2 27 111-137 4-31 (52)
48 2ts1_A Tyrosyl-tRNA synthetase 37.1 7.1 0.00024 38.8 0.0 27 111-137 353-380 (419)
49 1wv3_A Similar to DNA segregat 33.6 58 0.002 29.4 5.6 35 172-230 139-174 (238)
50 1rws_A Hypothetical protein PF 32.4 19 0.00065 26.7 1.7 21 172-202 51-71 (77)
51 3rpf_C Molybdopterin convertin 28.8 30 0.001 25.2 2.2 22 172-202 47-68 (74)
52 1vjk_A Molybdopterin convertin 26.0 29 0.001 26.8 1.8 21 172-202 72-92 (98)
53 2q5w_D Molybdopterin convertin 25.1 57 0.0019 23.5 3.3 21 172-202 51-71 (77)
54 3fm8_A Kinesin-like protein KI 24.8 1.1E+02 0.0036 25.0 5.1 21 172-202 94-114 (124)
55 1pm6_A Excisionase; antiparall 24.6 81 0.0028 23.5 4.0 27 111-137 4-31 (72)
56 1wm3_A Ubiquitin-like protein 21.7 41 0.0014 24.4 1.8 26 172-202 46-71 (72)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=7.1e-34 Score=276.28 Aligned_cols=170 Identities=14% Similarity=0.164 Sum_probs=97.5
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
+|++||++.+ .+||+.++++|+.|.|+ |||+.+ +++
T Consensus 18 RLd~~L~~~~~~~SR~~~~~lI~~G~V~----------------------------------VNG~~v---------~~~ 54 (325)
T 1v9f_A 18 RLDQALAEMFPDYSRSRIKEWILDQRVL----------------------------------VNGKVC---------DKP 54 (325)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHhhccccCHHHHHHHHHCCCEE----------------------------------ECCEEc---------cCC
Confidence 3999999988 89999999999999999 889863 467
Q ss_pred ceeecCCcEEEEecCCCCCCCCCCCCCCceeEeecCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCC---CCCceec
Q 018538 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGL---TTPLRTT 266 (354)
Q Consensus 190 ~~~V~~GD~I~V~~~~~~~~~~~~~~~~l~IlYED~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~---~~~~~~V 266 (354)
+++|.+||.|.|..++.......+...+++|+|||++|+|+|||+||+||++.++...|+.+.+..++.. ...+++|
T Consensus 55 ~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~v 134 (325)
T 1v9f_A 55 KEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIV 134 (325)
T ss_dssp ---------------------CCCCCCCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBC
T ss_pred CCEeCCCCEEEEeccccccccCCcccCCCeEEEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeee
Confidence 8899999999998654322111234456899999999999999999999998877677898888766531 2358999
Q ss_pred cCCCCCCceEEEeeCCHHHHHHHHHhHhcCccceEEEEEEeccCC-cceEEccccccC
Q 018538 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPIN 323 (354)
Q Consensus 267 HRLDrdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~YlAlV~G~l~-~G~I~~~L~pi~ 323 (354)
||||++||||||||||+++++.|+++|++++|+|+|+|+|.|.++ +|+|+.+|.+..
T Consensus 135 hRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~~g~i~~~i~~~~ 192 (325)
T 1v9f_A 135 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHP 192 (325)
T ss_dssp CCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCCCEEEECCEEECS
T ss_pred cCCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeEEEEEEEeCCCCCCCEEeeeeeECC
Confidence 999999999999999999999999999999999999999999988 799997776543
No 2
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=99.96 E-value=2.3e-29 Score=233.57 Aligned_cols=144 Identities=14% Similarity=0.201 Sum_probs=122.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeeccccccccccc
Q 018538 111 PVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVD 190 (354)
Q Consensus 111 ~L~~~L~~~~~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~~ 190 (354)
+|++||++.+.+||+.++++|+.|.|+ |||+.+ .+++
T Consensus 5 RLd~~L~~~~~~SR~~~~~li~~G~V~----------------------------------VNG~~v---------~~~~ 41 (234)
T 1ksk_A 5 RLDKFIAQQLGVSRAIAGREIRGNRVT----------------------------------VDGEIV---------RNAA 41 (234)
T ss_dssp EHHHHHHHHHTCCHHHHHHHHHTTCEE----------------------------------ETTEEC---------CCTT
T ss_pred cHHHHHHHcCCCCHHHHHHHHHcCeEE----------------------------------ECCEEe---------CCCC
Confidence 599999988789999999999999999 899873 2478
Q ss_pred eeecCCcEEEEecCCCCCCCCCCCCCCceeEee-cCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCC
Q 018538 191 QIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAV-TESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269 (354)
Q Consensus 191 ~~V~~GD~I~V~~~~~~~~~~~~~~~~l~IlYE-D~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRL 269 (354)
++|.+||.|.+.. ..|+|| |++|+|+|||+||+||++..+ ..|+.+.+..++. ..+++||||
T Consensus 42 ~~v~~gD~I~v~~--------------~~i~~e~d~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~~--~~~~~vhRL 104 (234)
T 1ksk_A 42 FKLLPEHDVAYDG--------------NPLAQQHGPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVA--WKLHAAGRL 104 (234)
T ss_dssp CEECTTCCEEETT--------------EEECCCCCCCEEEEEECTTCBSSSSCSS-SCBGGGGCCCTTG--GGCEESSCC
T ss_pred CCCCCCCEEEEeC--------------eEeecCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHhhhhhc--CCeeEcCCC
Confidence 8999999998751 248999 999999999999999998874 6687765543321 258999999
Q ss_pred CCCCceEEEeeCCHHHHHHHHHhHhcCccceEEEEEEeccCCcceEE
Q 018538 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316 (354)
Q Consensus 270 DrdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~YlAlV~G~l~~G~I~ 316 (354)
|++||||||||||+++++.|.. ++++++|+|+|+|.|.+++..|+
T Consensus 105 D~~TsGlll~ak~~~~~~~l~~--~~~~v~K~Y~a~v~g~~~~~~i~ 149 (234)
T 1ksk_A 105 DIDTTGLVLMTDDGQWSHRITS--PRHHCEKTYLVTLESPVADDTAE 149 (234)
T ss_dssp CTTCEEEEEEESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTTHHH
T ss_pred CCCCeeEEEEEcCHHHHHHHhC--CCCCCCeEEEEEEccCCCHHHHH
Confidence 9999999999999999988876 67899999999999999855555
No 3
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=99.95 E-value=6.5e-29 Score=232.13 Aligned_cols=146 Identities=17% Similarity=0.242 Sum_probs=121.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeeccccccccccc
Q 018538 111 PVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVD 190 (354)
Q Consensus 111 ~L~~~L~~~~~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~~ 190 (354)
+|++||++...+||+.++++|+.|.|+ |||+.+ .+++
T Consensus 4 RLd~~L~~~~~~SR~~~~~lI~~G~V~----------------------------------VNG~~v---------~~~~ 40 (243)
T 1vio_A 4 RLDKFIAENVGLTRSQATKAIRQSAVK----------------------------------INGEIV---------KSGS 40 (243)
T ss_dssp EHHHHHHHHHTCCHHHHHHHHHTTCEE----------------------------------ETTEEC---------CCTT
T ss_pred cHHHHHHHcCCCCHHHHHHHHHcCcEE----------------------------------ECCEEe---------CCCC
Confidence 599999988789999999999999999 899873 3578
Q ss_pred eeecCCcEEEEecCCCCCCCCCCCCCCceeEeecCe-EEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCC
Q 018538 191 QIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTES-HVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269 (354)
Q Consensus 191 ~~V~~GD~I~V~~~~~~~~~~~~~~~~l~IlYED~~-llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRL 269 (354)
++|.+||.|.+. +..|+|||++ |+|+|||+|++||+++.. ..|+.+.+..++. ..+++||||
T Consensus 41 ~~v~~gD~I~v~--------------~~~i~~ed~~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~~--~~~~~vhRL 103 (243)
T 1vio_A 41 VQISQEDEIYFE--------------DELLTWIEEGQYFMLNKPQGCVCSNDDGD-YPTIYQFFDYPLA--GKLHSAGRL 103 (243)
T ss_dssp CEECTTSCEEET--------------TEECCSSCCCCEEEEEECTTCBSSCCC---CCBGGGGSCTTGG--GGCEESSCC
T ss_pred CCcCCCCEEEEe--------------ccccccCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHHhHHhc--CCEeEccCC
Confidence 899999988774 1358999999 999999999999998764 5677766543332 258999999
Q ss_pred CCCCceEEEeeCCHHHHHHHHHhHhcCccceEEEEEEeccCCcceEEcc
Q 018538 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHY 318 (354)
Q Consensus 270 DrdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~YlAlV~G~l~~G~I~~~ 318 (354)
|++||||||||||+++++.+.. +++.|+|+|+|+|.|.+++..|+.+
T Consensus 104 D~~TsGlll~ak~~~~a~~l~~--~~~~v~K~Y~a~v~g~~~~~~i~~~ 150 (243)
T 1vio_A 104 DVDTTGLVLLTDDGQWSHRITS--PKHHCEKTYLVTLADPVEENYSAAC 150 (243)
T ss_dssp CTTCEEEEEEESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTTHHHHH
T ss_pred CCCCeEEEEEEECHHHHHHHhC--CCCCCCEEEEEEEeCCCCHHHHHHH
Confidence 9999999999999998888765 6789999999999999985555533
No 4
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.94 E-value=2e-26 Score=221.31 Aligned_cols=140 Identities=17% Similarity=0.247 Sum_probs=118.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeeccccccccccc
Q 018538 111 PVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVD 190 (354)
Q Consensus 111 ~L~~~L~~~~~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~~ 190 (354)
+|++||++...+||+.++++|+.|.|+ |||+.+ .++
T Consensus 8 RLdk~La~~g~~SR~~a~~lI~~G~V~----------------------------------VNG~~v----------~~~ 43 (290)
T 3dh3_A 8 RLNKYISESGICSRREADRYIEQGNVF----------------------------------LNGKRA----------TIG 43 (290)
T ss_dssp EHHHHHHTTTSSCHHHHHHHHHTTCEE----------------------------------ETTEEC----------CTT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHCCCEE----------------------------------ECCEEc----------cCC
Confidence 499999998778999999999999999 999873 678
Q ss_pred eeecCCcEEEEecCCCCCCCCCCCCCCceeEeecCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCC
Q 018538 191 QIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270 (354)
Q Consensus 191 ~~V~~GD~I~V~~~~~~~~~~~~~~~~l~IlYED~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLD 270 (354)
+.|.+||.|.|+..+.. . ..|||++|+|+|||+|++||+.+.+ ..|+.+++.. ...+++|||||
T Consensus 44 ~~V~~gD~I~v~~~~i~--------~---~~~ed~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~----~~~~~~VhRLD 107 (290)
T 3dh3_A 44 DQVKPGDVVKVNGQLIE--------P---REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH----SKRVFPIGRLD 107 (290)
T ss_dssp CEECTTCCEEETTEEEC--------C---CCGGGCCEEEEEECTTCBCCCCSSC-TTBHHHHHTC----SSCCEESSCCC
T ss_pred cCcCCCCEEEecccccc--------c---cccccceEEEEECCCccccCCCCCC-CCcHHHHhhc----cCceeeeccCC
Confidence 89999999998742210 0 1389999999999999999998765 5677776532 35689999999
Q ss_pred CCCceEEEeeCCHHHHHHHHHhHhcCccceEEEEEEeccCCc
Q 018538 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV 312 (354)
Q Consensus 271 rdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~YlAlV~G~l~~ 312 (354)
++||||||||+|+++++.|.+. .++|+|+|+|+|.|.+++
T Consensus 108 ~dTSGLllla~d~~~~~~L~~~--~~~v~K~Y~a~V~G~~~~ 147 (290)
T 3dh3_A 108 KDSQGLIFLTNHGDLVNKILRA--GNDHEKEYLVTVDKPITE 147 (290)
T ss_dssp TTCEEEEEEESCTTHHHHHHCG--GGCCCEEEEEEESSCCCH
T ss_pred CCCcceEEEcCCHHHHHHHHHh--hCCcCEEEEEEECCCCCH
Confidence 9999999999999999999884 568999999999999973
No 5
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=99.92 E-value=1.4e-24 Score=199.70 Aligned_cols=103 Identities=22% Similarity=0.228 Sum_probs=91.2
Q ss_pred CceeEeecCeEEEEECCCCccccCCCC-CCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhc
Q 018538 217 NSRIIAVTESHVVLDKPAGTSVGGTTD-NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE 295 (354)
Q Consensus 217 ~l~IlYED~~llVVNKPaGl~vhp~~~-~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~ 295 (354)
.++|+|||++|+|+|||+|++||++.+ ...+++.+.+..++ ..+++|||||++||||||||||+++++.|+++|++
T Consensus 11 ~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~---~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~ 87 (217)
T 2i82_A 11 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY---PQAESVHRLDMATSGVIVVALTKAAERELKRQFRE 87 (217)
T ss_dssp SCCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC---TTCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHT
T ss_pred CceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC---CCCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHh
Confidence 378999999999999999999998764 35668888877665 25789999999999999999999999999999999
Q ss_pred CccceEEEEEEeccCC--cceEEcccccc
Q 018538 296 KKVKKLYLALTTAPLP--VGIMTHYMRPI 322 (354)
Q Consensus 296 ~~V~K~YlAlV~G~l~--~G~I~~~L~pi 322 (354)
++|+|+|+|+|.|.++ +|+|+.+|.+.
T Consensus 88 ~~v~K~Y~a~v~G~~~~~~g~i~~~l~~~ 116 (217)
T 2i82_A 88 REPKKQYVARVWGHPSPAEGLVDLPLICD 116 (217)
T ss_dssp TCSEEEEEEEEESCCSSSEEEEECCEEEC
T ss_pred CCeeEEEEEEEecccCCCCcEEecceeec
Confidence 9999999999999987 68899777553
No 6
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=99.90 E-value=6.3e-24 Score=196.71 Aligned_cols=103 Identities=24% Similarity=0.302 Sum_probs=89.9
Q ss_pred eeEeecCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhcCcc
Q 018538 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298 (354)
Q Consensus 219 ~IlYED~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~~~V 298 (354)
+|+|||++|+|+|||+|++||++.+ ...++++.+...+.....+++|||||++||||||||||+++++.|+++|++++|
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v 81 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 81 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCS
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcCCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCe
Confidence 5999999999999999999999776 456787777655543346899999999999999999999999999999999999
Q ss_pred ceEEEEEEeccCC--cceEEcccccc
Q 018538 299 KKLYLALTTAPLP--VGIMTHYMRPI 322 (354)
Q Consensus 299 ~K~YlAlV~G~l~--~G~I~~~L~pi 322 (354)
+|+|+|+|.|.++ +|+|+.+|.+.
T Consensus 82 ~K~Y~a~v~G~~~~~~~~i~~~l~~~ 107 (228)
T 1v9k_A 82 QKDYLALVRGQWQSHVKSVQAPLLKN 107 (228)
T ss_dssp EEEEEEEEESCCCTTCCEECCCEEEE
T ss_pred eEEEEEEEecccCCCCCEEeCceecc
Confidence 9999999999987 68899777544
No 7
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.86 E-value=1.7e-22 Score=181.94 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=74.3
Q ss_pred ceeEeecCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhcCc
Q 018538 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKK 297 (354)
Q Consensus 218 l~IlYED~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~~~ 297 (354)
..|+|||++|+|+|||+||+||+++.....|+.+.+. ...+++|||||++||||||||||+++++.|+++ +++
T Consensus 4 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~-----~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~--~~~ 76 (189)
T 2oml_A 4 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP--GKR 76 (189)
T ss_dssp ----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC-----CSSCEESSCCCTTCEEEEEEESCHHHHHHHHST--TSC
T ss_pred cccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC-----CCCceECCCCCCCCeeEEEEEcCHHHHHHHhCc--cCC
Confidence 4699999999999999999999988766677765543 136899999999999999999999999999997 678
Q ss_pred cceEEEEEEeccCC
Q 018538 298 VKKLYLALTTAPLP 311 (354)
Q Consensus 298 V~K~YlAlV~G~l~ 311 (354)
|+|+|+|+|.|.++
T Consensus 77 v~K~Y~a~v~G~~~ 90 (189)
T 2oml_A 77 TGKIYYVQVEGIPT 90 (189)
T ss_dssp CCEEEEEEEESCCC
T ss_pred CcEEEEEEEcCCCC
Confidence 99999999999987
No 8
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=99.85 E-value=3.3e-22 Score=184.29 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=76.4
Q ss_pred CceeEeecCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhcC
Q 018538 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREK 296 (354)
Q Consensus 217 ~l~IlYED~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~~ 296 (354)
.+.|+|||++|+|+|||+|++||+++.....|+.+.+. ...+++|||||++||||||||||+++++.|+++ .+
T Consensus 31 ~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~-----~~~~~~VhRLDr~TSGllllAk~~~~~~~L~~~--~~ 103 (217)
T 2olw_A 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP--GK 103 (217)
T ss_dssp ------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC-----CCSCEESSCCCTTCEEEEEEESCHHHHHHHHCT--TC
T ss_pred cCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC-----cCCceECCCCCCCCeeEEEEEcCHHHHHHHHcc--cc
Confidence 57899999999999999999999988766667765542 136899999999999999999999999999997 57
Q ss_pred ccceEEEEEEeccCC--c-ceEEccc
Q 018538 297 KVKKLYLALTTAPLP--V-GIMTHYM 319 (354)
Q Consensus 297 ~V~K~YlAlV~G~l~--~-G~I~~~L 319 (354)
+|+|+|+|+|.|.++ + +.|+..+
T Consensus 104 ~v~K~Y~A~V~G~~~~~~~~~i~~~i 129 (217)
T 2olw_A 104 RTGKIYYVQVEGIPTQDALEALRNGV 129 (217)
T ss_dssp CCCEEEEEEEESCCCHHHHHHHHHCC
T ss_pred cCCEEEEEEEccCCCHHHHHHHhCCE
Confidence 899999999999997 2 3455433
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.69 E-value=1.6e-17 Score=155.32 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=70.0
Q ss_pred cCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhcCccceEEE
Q 018538 224 TESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303 (354)
Q Consensus 224 D~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~Yl 303 (354)
+++|||+|||+|++||+.+. ...|+.+++. ....+++|||||+|||||||||+|+++++.|.+. ++.|+|+|+
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~----~~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p--~~~v~K~Y~ 85 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVN----HSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRA--GNDHEKEYL 85 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSC----CSSCCEEESCCCTTCEEEEEEESCHHHHHHHHHH--HHHSCEEEE
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhh----ccCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCc--cCCCCEEEE
Confidence 46899999999999998766 4568776542 2246899999999999999999999999999884 568999999
Q ss_pred EEEeccCCc
Q 018538 304 ALTTAPLPV 312 (354)
Q Consensus 304 AlV~G~l~~ 312 (354)
|+|.|.+++
T Consensus 86 a~V~G~~~~ 94 (237)
T 2gml_A 86 VTVDKPITE 94 (237)
T ss_dssp EEESSCCCH
T ss_pred EEEcccCCH
Confidence 999999873
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.20 E-value=1.6e-07 Score=74.53 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=54.5
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
+||+||++.+ ..||+.++++|+.|.|+ |||+. +++
T Consensus 2 RLD~~L~~~~~~~sR~~~~~li~~G~V~----------------------------------VNg~~----------~~~ 37 (92)
T 2k6p_A 2 RIDKFLQSVGLVKRRVLATDMCNVGAVW----------------------------------LNGSC----------AKA 37 (92)
T ss_dssp BHHHHSTTTTSCCCCCSSCCHHHHTCCE----------------------------------ETTEE----------CCT
T ss_pred hHHHHHHHCCCCCCHHHHHHHHHCCcEE----------------------------------ECCEE----------cCC
Confidence 4999998765 35999999999999999 99986 367
Q ss_pred ceeecCCcEEEEecCCCCCCCC--------CCCCCCceeEeecCeE
Q 018538 190 DQIVEAGTYLRVHVHPKRFPRC--------YDIDWNSRIIAVTESH 227 (354)
Q Consensus 190 ~~~V~~GD~I~V~~~~~~~~~~--------~~~~~~l~IlYED~~l 227 (354)
++.|.+||.|.|...++..... ......+.++|||+++
T Consensus 38 ~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lyed~~~ 83 (92)
T 2k6p_A 38 SKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIAPKTK 83 (92)
T ss_dssp TCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEEECCC
T ss_pred CCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHHhcCC
Confidence 8899999999998654322110 0112247899999864
No 11
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=97.63 E-value=0.00012 Score=62.33 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=44.5
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
+||+||...+ ..||+.++++|+.|.|+ |||+. +++
T Consensus 10 RLDk~L~~~~~~~SRs~a~~li~~G~V~----------------------------------VNG~~----------vk~ 45 (133)
T 1dm9_A 10 RLDKWLWAARFYKTRALAREMIEGGKVH----------------------------------YNGQR----------SKP 45 (133)
T ss_dssp BHHHHHHHTTSSSSHHHHHHHHHTTCEE----------------------------------ETTEE----------CCT
T ss_pred hHHHHHHHCCCCCCHHHHHHHHHCCcEE----------------------------------ECCEE----------cCC
Confidence 4999999874 67999999999999999 99986 377
Q ss_pred ceeecCCcEEEEecCC
Q 018538 190 DQIVEAGTYLRVHVHP 205 (354)
Q Consensus 190 ~~~V~~GD~I~V~~~~ 205 (354)
++.|..||.|.|.+..
T Consensus 46 s~~V~~GD~I~I~~~~ 61 (133)
T 1dm9_A 46 SKIVELNATLTLRQGN 61 (133)
T ss_dssp TCBCCTTCEEEEEETT
T ss_pred CCEeCCCCEEEEEeCC
Confidence 8899999999998643
No 12
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=97.57 E-value=1.4e-05 Score=61.74 Aligned_cols=49 Identities=16% Similarity=0.057 Sum_probs=41.5
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
+|++||++.. ..||+.++++|+.|.|+ |||+.+ +++
T Consensus 22 RLdk~L~~~g~~~SR~~a~~lI~~G~V~----------------------------------VNG~~v---------~~~ 58 (79)
T 1p9k_A 22 ELCDLLKLEGWSESGAQAKIAIAEGQVK----------------------------------VDGAVE---------TRK 58 (79)
T ss_dssp CHHHHHHHHTSCSSSSTTSHHHHHHHHE----------------------------------ETTBCC---------CCS
T ss_pred hHHHHHHHCCCCCCHHHHHHHHHCCEEE----------------------------------ECCEEe---------cCC
Confidence 5999999874 24999999999999999 889863 467
Q ss_pred ceeecCCcEEEEe
Q 018538 190 DQIVEAGTYLRVH 202 (354)
Q Consensus 190 ~~~V~~GD~I~V~ 202 (354)
++.|.+||.|.+.
T Consensus 59 ~~~v~~gd~I~v~ 71 (79)
T 1p9k_A 59 RCKIVAGQTVSFA 71 (79)
T ss_dssp SCCCCSSEEEEET
T ss_pred CCCCCCCCEEEEC
Confidence 7889999988775
No 13
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=97.26 E-value=0.00042 Score=60.59 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=44.8
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
|||++|.+.. ..||+.++++|..|.|. |||+++ .++
T Consensus 52 RLD~~L~~~g~~~SR~~ar~lI~~G~V~----------------------------------VNG~~v---------~~p 88 (159)
T 1c05_A 52 RLDNLVYRLGLARTRRQARQLVTHGHIL----------------------------------VDGSRV---------NIP 88 (159)
T ss_dssp BHHHHHHHTTSCSSHHHHHHHHHTTCEE----------------------------------ETTEEC---------CCS
T ss_pred HHHHHHHHcCCcCCHHHHHHHHHCCCEE----------------------------------ECCEEe---------CcC
Confidence 5999999876 68999999999999999 999873 468
Q ss_pred ceeecCCcEEEEecC
Q 018538 190 DQIVEAGTYLRVHVH 204 (354)
Q Consensus 190 ~~~V~~GD~I~V~~~ 204 (354)
++.|.+||.|.|...
T Consensus 89 s~~V~~gD~I~V~~~ 103 (159)
T 1c05_A 89 SYRVKPGQTIAVREK 103 (159)
T ss_dssp SCBCCTTCEEEECGG
T ss_pred CcEeCCCCEEEEeCc
Confidence 899999999999753
No 14
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=97.09 E-value=0.0007 Score=61.80 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=44.7
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
+||+||.+.. +.||+.++++|..|.|. |||+.+ ..+
T Consensus 100 RLD~~L~~~g~~~SR~~arqLI~~G~V~----------------------------------VNG~~v---------~~p 136 (209)
T 2vqe_D 100 RLDNVVYRLGFAVSRRQARQLVRHGHIT----------------------------------VNGRRV---------DLP 136 (209)
T ss_dssp BHHHHHHHTTSSSSHHHHHHHHHTTCEE----------------------------------ETTEEC---------CCT
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHCCCEE----------------------------------ECCEEe---------CcC
Confidence 4999998875 78999999999999999 999873 368
Q ss_pred ceeecCCcEEEEecC
Q 018538 190 DQIVEAGTYLRVHVH 204 (354)
Q Consensus 190 ~~~V~~GD~I~V~~~ 204 (354)
++.|.+||.|.|...
T Consensus 137 s~~V~~gD~I~V~~~ 151 (209)
T 2vqe_D 137 SYRVRPGDEIAVAEK 151 (209)
T ss_dssp TCBCCTTCEEEECGG
T ss_pred CcCcCCCCEEEEcCc
Confidence 899999999999753
No 15
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=96.86 E-value=0.0012 Score=63.14 Aligned_cols=51 Identities=12% Similarity=-0.059 Sum_probs=44.2
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCC-e-EEeecccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKG-K-TVREAQKTFRIT 187 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnG-k-~vr~~~~~~~~~ 187 (354)
|||+||.+.. ..||++++++|+.|.|+ ||| + ++ .
T Consensus 8 RLD~~L~~~g~~~SR~~a~~lI~~G~V~----------------------------------Vng~~~~v---------~ 44 (291)
T 3hp7_A 8 RVDVLAYKQGLFETREQAKRGVMAGLVV----------------------------------NVINGERY---------D 44 (291)
T ss_dssp EHHHHHHHTTSSSSHHHHHHHHHTTCEE----------------------------------ETTTCCBC---------C
T ss_pred hHHHHHHHcCCcccHHHHHHHHHCCeEE----------------------------------ECCeEEEE---------c
Confidence 5999998876 67999999999999999 888 6 53 5
Q ss_pred ccceeecCCcEEEEecC
Q 018538 188 HVDQIVEAGTYLRVHVH 204 (354)
Q Consensus 188 ~~~~~V~~GD~I~V~~~ 204 (354)
++++.|.+||.|+|...
T Consensus 45 kp~~~V~~~d~I~v~g~ 61 (291)
T 3hp7_A 45 KPGEKIDDGTELKLKGE 61 (291)
T ss_dssp CTTCEEETTCCEEETTC
T ss_pred cCCCCCCCCCEEEEccc
Confidence 78899999999998743
No 16
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.0012 Score=50.18 Aligned_cols=49 Identities=10% Similarity=0.048 Sum_probs=41.3
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
|||.+|.+.. .-||..+++||..|.|+ |||+++ +++
T Consensus 9 RLD~~l~~~gla~SR~~A~~lI~~G~V~----------------------------------Vng~~v---------~kp 45 (71)
T 2cqj_A 9 RLPTVLLKLRMAQHLQAAVAFVEQGHVR----------------------------------VGPDVV---------TDP 45 (71)
T ss_dssp EHHHHHHHTTCSSSHHHHHHHHHTTCEE----------------------------------ETTBCC---------CCT
T ss_pred HHHHHHHHhCCcCCHHHHHHHHHCCcEE----------------------------------ECCEEE---------CCC
Confidence 5999999887 45999999999999999 889874 578
Q ss_pred ceeecC--CcEEEEe
Q 018538 190 DQIVEA--GTYLRVH 202 (354)
Q Consensus 190 ~~~V~~--GD~I~V~ 202 (354)
++.|.+ +|.|.+.
T Consensus 46 s~~V~~~~~d~I~~~ 60 (71)
T 2cqj_A 46 AFLVTRSMEDFVTWV 60 (71)
T ss_dssp TCEEEHHHHTTEEES
T ss_pred CCCCCCCCCcEEEEE
Confidence 889988 6777654
No 17
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=96.66 E-value=0.00053 Score=62.50 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=44.3
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
|||.||.+.. ..||+.+++||..|.|. |||+.+ ..+
T Consensus 96 RLD~~L~r~g~~~SR~~ArqLI~~G~V~----------------------------------VNG~~V---------~~p 132 (205)
T 3r8n_D 96 RLDNVVYRMGFGATRAEARQLVSHKAIM----------------------------------VNGRVV---------NIA 132 (205)
T ss_dssp BTTHHHHTTSSCSSHHHHHHHHHTTCCB----------------------------------SSSSBC---------CCT
T ss_pred hHHHHHHHhcchhHHHHHHHHHHCCCEE----------------------------------ECCEEE---------ccC
Confidence 4999998865 78999999999999999 899863 468
Q ss_pred ceeecCCcEEEEecC
Q 018538 190 DQIVEAGTYLRVHVH 204 (354)
Q Consensus 190 ~~~V~~GD~I~V~~~ 204 (354)
++.|.+||.|.|...
T Consensus 133 s~~Vk~GD~I~V~~~ 147 (205)
T 3r8n_D 133 SYQVSPNDVVSIREK 147 (205)
T ss_dssp TCBCCTTBCCBCCSS
T ss_pred CcCcCCCCEEEecCc
Confidence 999999999988743
No 18
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=96.64 E-value=0.0026 Score=61.75 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=55.8
Q ss_pred CeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhcCccceEEEE
Q 018538 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304 (354)
Q Consensus 225 ~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~YlA 304 (354)
+.+++||||+|+.+| .+++.+.+.++. .+++..+.||-..||+|+++-.... ++.+.+.+ -.|+|.|
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~~-kKvGH~GTLDP~AtGvL~i~~G~aT--Kl~~~l~~--~~K~Y~a 91 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYNA-NRAGHTGALDPLATGMLPICLGEAT--KFSQYLLD--SDKRYRV 91 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTTC-SCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHHT--SCEEEEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhcc-ceeccCCCCCCCCeeEEEEEECHHH--hHHHHhcc--CCcEEEE
Confidence 469999999999775 466777776653 5789999999999999999997742 34455553 3799999
Q ss_pred EEe-cc
Q 018538 305 LTT-AP 309 (354)
Q Consensus 305 lV~-G~ 309 (354)
.+. |.
T Consensus 92 ~~~lG~ 97 (327)
T 1k8w_A 92 IARLGQ 97 (327)
T ss_dssp EEEETE
T ss_pred EEEECC
Confidence 986 53
No 19
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=96.62 E-value=0.0024 Score=62.11 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=57.1
Q ss_pred eecCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhcCccceE
Q 018538 222 AVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301 (354)
Q Consensus 222 YED~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~ 301 (354)
|-.+.++++|||.|+.+| .+++.+.+.++. .+++..+-||-..||||+++-... .++.+.+. ...|+
T Consensus 43 ~~~~Gil~vdKP~g~tS~--------~vv~~vr~~~~~-~KvGH~GTLDP~atGvL~v~~g~a--Tk~~~~l~--~~~K~ 109 (334)
T 2aus_C 43 HIQYGVINLDKPPGPTSH--------EVVAWIKRILNL-EKAGHGGTLDPKVSGVLPVALERA--TRVVQALL--PAGKE 109 (334)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTTC-SCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGT--TCCEE
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhCc-ceeccccccCCccceeEEEEeChh--hhhHHHhc--ccCcE
Confidence 445789999999999775 466777777753 578999999999999999999753 35555555 35899
Q ss_pred EEEEEe
Q 018538 302 YLALTT 307 (354)
Q Consensus 302 YlAlV~ 307 (354)
|.|.+.
T Consensus 110 Y~~~~~ 115 (334)
T 2aus_C 110 YVALMH 115 (334)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
No 20
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=96.61 E-value=0.00096 Score=60.62 Aligned_cols=51 Identities=8% Similarity=0.004 Sum_probs=44.2
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
|||.+|.+.. ..||..+++||..|.|. |||+.+ ..+
T Consensus 90 RLD~~L~r~g~a~SR~~ArqLI~~G~V~----------------------------------VNG~~V---------~~p 126 (201)
T 3bbn_D 90 RLDNILFRLGMAPTIPGARQLVNHRHIL----------------------------------VNGRIV---------DIP 126 (201)
T ss_dssp BTTTTTTTTTSSSSSHHHHHHHHTTCEE----------------------------------ETTEEC---------CCT
T ss_pred HHHHHHHHcCCcCCHHHHHHHHhCCcEE----------------------------------eCCEEE---------eec
Confidence 4999998776 57999999999999999 999874 478
Q ss_pred ceeecCCcEEEEecC
Q 018538 190 DQIVEAGTYLRVHVH 204 (354)
Q Consensus 190 ~~~V~~GD~I~V~~~ 204 (354)
++.|.+||.|.|...
T Consensus 127 S~~V~~gD~I~V~~~ 141 (201)
T 3bbn_D 127 SYRCKPQDTIMARDE 141 (201)
T ss_dssp TCBCCTTEEEEECSS
T ss_pred ceecCCCCEEEEccc
Confidence 999999999998743
No 21
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=96.55 E-value=0.003 Score=60.89 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=56.1
Q ss_pred CeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhcCccceEEEE
Q 018538 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304 (354)
Q Consensus 225 ~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~YlA 304 (354)
+.++++|||+|+.+| .+++.+.+.++. .+++..+-||-..||||+++-... .++.+.+. .-.|+|.|
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~~-kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~--~~~K~Y~a 69 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLKT-RKVGHGGTLDPFACGVLIIGVNQG--TRILEFYK--DLKKVYWV 69 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTTC-SCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGT--TSCEEEEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhcc-ceecccccCCCCcceeEEEEECHH--HhHHHHhC--ccCcEEEE
Confidence 468999999999776 466777777753 578999999999999999999874 34555555 34899999
Q ss_pred EEe-c
Q 018538 305 LTT-A 308 (354)
Q Consensus 305 lV~-G 308 (354)
.+. |
T Consensus 70 ~~~lG 74 (309)
T 1r3e_A 70 KMRLG 74 (309)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 985 5
No 22
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=96.41 E-value=0.0039 Score=60.26 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=56.8
Q ss_pred cCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhcCccceEEE
Q 018538 224 TESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303 (354)
Q Consensus 224 D~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~Yl 303 (354)
.+.++++|||.|+.+| .+++.+.+.++. .+++..+-||-..||||+++-... .++.+.+. .-.|+|.
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~~-kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~--~~~K~Y~ 71 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFAT-RRVGHAGTLDPMATGVLVIGIERA--TKILGLLT--AAPKSYA 71 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTTC-SCEEESSCCCTTCEEEEEEEEGGG--GGGGGGTT--TSCEEEE
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhcc-ccccccccCCCCCeEEEEEEECHH--HhHHHHhC--cCCcEEE
Confidence 3579999999999775 566777777754 578999999999999999999874 34555554 3589999
Q ss_pred EEEe-c
Q 018538 304 ALTT-A 308 (354)
Q Consensus 304 AlV~-G 308 (354)
|.+. |
T Consensus 72 ~~~~lG 77 (316)
T 1sgv_A 72 ATIRLG 77 (316)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 9985 5
No 23
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=96.35 E-value=0.0042 Score=60.96 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=57.5
Q ss_pred eecCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhcCccceE
Q 018538 222 AVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301 (354)
Q Consensus 222 YED~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~ 301 (354)
|-.+.+++||||.|+.+| .+++.+.+.++. .+++..+-||-..||||+++-... .++.+.+. ...|+
T Consensus 63 ~~~~Gil~vdKP~G~TS~--------~vv~~vr~~l~~-~KvGH~GTLDP~AtGvL~v~~G~a--Tk~~~~l~--~~~K~ 129 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSH--------EVSTWVKKILNL-DKAGHGGTLDPKVTGVLPVALERA--TKTIPMWH--IPPKE 129 (357)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTTC-SCEEESSCCCTTCEEEEEEEEGGG--GGGGGGTT--SSCEE
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhCc-cccccccccCCCceeEEEEEeCHH--HhHHHHhc--cCCcE
Confidence 445789999999999775 466777777753 478999999999999999999753 34555555 36899
Q ss_pred EEEEEe
Q 018538 302 YLALTT 307 (354)
Q Consensus 302 YlAlV~ 307 (354)
|.|.+.
T Consensus 130 Y~~~~~ 135 (357)
T 2apo_A 130 YVCLMH 135 (357)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
No 24
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.09 E-value=0.0061 Score=60.59 Aligned_cols=73 Identities=16% Similarity=0.318 Sum_probs=56.5
Q ss_pred eecCeEEEEECCCCccccCCCCCCcchHHHHHHHHhCCCCCceeccCCCCCCceEEEeeCCHHHHHHHHHhHhcCccceE
Q 018538 222 AVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301 (354)
Q Consensus 222 YED~~llVVNKPaGl~vhp~~~~~~~TL~~~l~~~l~~~~~~~~VHRLDrdTSGLLL~AKn~~a~~~L~~~f~~~~V~K~ 301 (354)
|-.+.+|++|||.|+.+| .++..+.+.++. .+++..+-||-..||||+++-... .++.+.+. .-.|+
T Consensus 56 ~~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~~-kKvGH~GTLDP~AtGvL~v~iG~a--TKl~~~l~--~~~K~ 122 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSH--------EVVAWIKRILRC-EKTGHSGTLDPKVTGCLIVCIDRA--TRLVKSQQ--GAGKE 122 (400)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHHTC-SCEEESSCCCTTCEEEEEEEEGGG--GGGHHHHH--HSCEE
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhCc-CcccccCCCCCCCeEEEEEEEChH--HhHhHHhc--CCCcE
Confidence 455789999999999776 466777777764 578999999999999999998753 33444444 25799
Q ss_pred EEEEEe
Q 018538 302 YLALTT 307 (354)
Q Consensus 302 YlAlV~ 307 (354)
|.|.+.
T Consensus 123 Y~a~~~ 128 (400)
T 3u28_A 123 YVCIVR 128 (400)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999974
No 25
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.63 E-value=0.0058 Score=54.55 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=42.5
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
|||.+|.+.. .-||..+++||..|.|. |||++| +++
T Consensus 104 RLD~~L~~~G~a~SR~~Ar~LI~~G~V~----------------------------------VNg~~V---------~~P 140 (180)
T 3j20_D 104 RLQTIVYKKGLARTMRQARQLIVHGHIE----------------------------------VNGQII---------RSP 140 (180)
T ss_dssp SHHHHHHHHTSSSSHHHHHHHHHHTCCE----------------------------------ESSSBC---------CCS
T ss_pred hhhheeecCcccCcHHHHHHHHHcCCeE----------------------------------ECCEEe---------CCC
Confidence 5999997765 56999999999999999 899874 578
Q ss_pred ceeecCC--cEEEEe
Q 018538 190 DQIVEAG--TYLRVH 202 (354)
Q Consensus 190 ~~~V~~G--D~I~V~ 202 (354)
++.|.+| |.|.+.
T Consensus 141 s~~V~~~~eD~I~v~ 155 (180)
T 3j20_D 141 SYLVLKEEEDTITYA 155 (180)
T ss_dssp SCCCCTGGGGCEECS
T ss_pred CcccCCCCCCEEEEe
Confidence 9999999 888875
No 26
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=95.06 E-value=0.0078 Score=53.73 Aligned_cols=49 Identities=8% Similarity=-0.030 Sum_probs=41.4
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
+||.+|.+.. ..||..+++||..|.|. |||+.| ..+
T Consensus 108 RLD~vL~~~G~a~SR~~Ar~LI~~G~V~----------------------------------VNg~~V---------~~P 144 (181)
T 2xzm_D 108 RLQTRVFKLNLANSIHHSRVLIRQRHIK----------------------------------VGKNLV---------NVP 144 (181)
T ss_dssp BHHHHHHHTTCSSSTTHHHHHTTTTCCE----------------------------------ETTEEC---------CCS
T ss_pred chhHHHHhccccCCHHHHHHHHHCCEEE----------------------------------ECCEEE---------CCC
Confidence 4999998876 56999999999999999 999984 588
Q ss_pred ceeecCCcEEEEe
Q 018538 190 DQIVEAGTYLRVH 202 (354)
Q Consensus 190 ~~~V~~GD~I~V~ 202 (354)
++.|.+||.+.|.
T Consensus 145 s~~V~~~d~~~I~ 157 (181)
T 2xzm_D 145 SFMVRTDSEKSID 157 (181)
T ss_dssp CCBCCSTTSSCEE
T ss_pred CcCCCCCCceEEE
Confidence 9999999854444
No 27
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.31 E-value=0.1 Score=48.48 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=44.8
Q ss_pred CcHHHHHHhhcC--CCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccc
Q 018538 110 GPVLEYICRELN--LPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRIT 187 (354)
Q Consensus 110 ~~L~~~L~~~~~--lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~ 187 (354)
-+|.-||...++ .+++++++++.+|.|. |||+++ +
T Consensus 43 lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~----------------------------------VdGKvr---------~ 79 (243)
T 3j20_E 43 IPLLYIVRDYLGYAKTAREARKILNEGKFL----------------------------------VDGRVR---------K 79 (243)
T ss_dssp EEHHHHHHTTSCCCSSHHHHHHHHHHCSCE----------------------------------ETTEEC---------C
T ss_pred eeehhhhhhhhccccCHHHHHHHHHCCcEE----------------------------------ECCEEe---------c
Confidence 369999999884 7899999999999999 999983 6
Q ss_pred ccceeecCCcEEEEe
Q 018538 188 HVDQIVEAGTYLRVH 202 (354)
Q Consensus 188 ~~~~~V~~GD~I~V~ 202 (354)
+++|.+..+|+|+|.
T Consensus 80 d~~ypvG~mDVIsI~ 94 (243)
T 3j20_E 80 DYKFPVGIMDVVSIP 94 (243)
T ss_dssp CSSCEECTTCEEEET
T ss_pred cccCCcccceEEEec
Confidence 889999999999987
No 28
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=93.27 E-value=0.03 Score=50.64 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=40.6
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
|||.+|.+.. .-|+..+++||..|.|. |||++| +.+
T Consensus 108 RLD~~L~r~G~a~Sr~~ArqLI~~GhV~----------------------------------VNG~~V---------~~P 144 (197)
T 3u5c_J 108 RLQTQVYKLGLAKSVHHARVLITQRHIA----------------------------------VGKQIV---------NIP 144 (197)
T ss_dssp SHHHHHHHSSTTSSHHHHHHHHHTSCCB----------------------------------SSSCBC---------CCT
T ss_pred HHHHHHHHccccCCHHHHHHHHHcCCEE----------------------------------ECCEEe---------CCC
Confidence 5999998876 45999999999999999 899874 578
Q ss_pred ceeecCCc--EEEEe
Q 018538 190 DQIVEAGT--YLRVH 202 (354)
Q Consensus 190 ~~~V~~GD--~I~V~ 202 (354)
++.|.+|+ .|.+.
T Consensus 145 s~~V~~g~ed~I~~~ 159 (197)
T 3u5c_J 145 SFMVRLDSEKHIDFA 159 (197)
T ss_dssp TCCCCSTTGGGCBCC
T ss_pred ccccCCCCccEEEEc
Confidence 89999995 55543
No 29
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=91.62 E-value=0.29 Score=44.66 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=43.3
Q ss_pred cHHHHHHhhc--CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeeccccccccc
Q 018538 111 PVLEYICREL--NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITH 188 (354)
Q Consensus 111 ~L~~~L~~~~--~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~ 188 (354)
+|.-||+..+ ..+++++++++.+|.|. |||+++ ++
T Consensus 9 PL~i~LRdrLgyA~t~rEarkIv~~~~I~----------------------------------VDGKvr---------~d 45 (213)
T 3kbg_A 9 TLLSIIRDYLKLSDKEREAARILANGLVK----------------------------------VDGKTV---------RE 45 (213)
T ss_dssp EHHHHHHHHHHTTTCGGGHHHHHHTTCEE----------------------------------ETTEEC---------CC
T ss_pred eeHHHHhhhhcccccHHHHHHHHHCCCEE----------------------------------ECCEEe---------cc
Confidence 7889999887 57889999999999999 999983 68
Q ss_pred cceeecCCcEEEE
Q 018538 189 VDQIVEAGTYLRV 201 (354)
Q Consensus 189 ~~~~V~~GD~I~V 201 (354)
++|.+..+|+|+|
T Consensus 46 ~~ypvG~mDVIsI 58 (213)
T 3kbg_A 46 KKFAVGFMDVIEI 58 (213)
T ss_dssp TTCEECTTCEEEE
T ss_pred cCCCccceeEEEe
Confidence 8999999999999
No 30
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=83.68 E-value=0.008 Score=54.27 Aligned_cols=51 Identities=8% Similarity=0.011 Sum_probs=42.0
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccccccccc
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~~ 189 (354)
|||.+|.+.. .-|+..++++|..|.|. |||++| +.|
T Consensus 110 RLD~~L~r~G~a~SR~~ArqlI~~GhV~----------------------------------VNG~~V---------~~P 146 (195)
T 3iz6_C 110 RLQTLVFKAGMAKSIHHARVLIRQRHIR----------------------------------VGRQIV---------NIP 146 (195)
T ss_dssp CCCSSCCCCCCHHHHSCTTSHHHHHSTT----------------------------------TSCCCC---------CCC
T ss_pred hhhHHHHhccccCCHHHHHHHHHcCCEE----------------------------------ECCEEe---------CCC
Confidence 4898887754 33889999999999999 899874 578
Q ss_pred ceeecCCcEEEEecC
Q 018538 190 DQIVEAGTYLRVHVH 204 (354)
Q Consensus 190 ~~~V~~GD~I~V~~~ 204 (354)
++.|.+||.+.|.+.
T Consensus 147 s~~V~~gde~~I~~~ 161 (195)
T 3iz6_C 147 SFMVRVESEKHIDFS 161 (195)
T ss_dssp CCCCSSSCSSSSCSS
T ss_pred CcCcCCCCEEEEEec
Confidence 999999998877653
No 31
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=83.09 E-value=2.4 Score=39.62 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=41.9
Q ss_pred CCCcHHHHHHhhcC--CCHHHHHHHHHc--CCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeecccc
Q 018538 108 EGGPVLEYICRELN--LPPLFVADLIHF--GAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKT 183 (354)
Q Consensus 108 ~~~~L~~~L~~~~~--lSr~~~~~lI~~--G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~ 183 (354)
+.-+|.-||.+.|+ ++.+++++++.+ |.|. |||++.
T Consensus 40 eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~Vk----------------------------------VDGkvr------ 79 (260)
T 2xzm_W 40 ESLPLSVLLKERLNYALNGRDVTLILNDKEQNVF----------------------------------VDGKVR------ 79 (260)
T ss_dssp SCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEE----------------------------------ETTEEC------
T ss_pred eeehhHhhhhhhhccccchhHHHHHHhccCCeEE----------------------------------ECCEEe------
Confidence 33369999999884 888999999999 9999 999973
Q ss_pred ccccccceeecCCcEEEEe
Q 018538 184 FRITHVDQIVEAGTYLRVH 202 (354)
Q Consensus 184 ~~~~~~~~~V~~GD~I~V~ 202 (354)
++..+.+--=|+|+|.
T Consensus 80 ---~D~~~PvG~MDVIsI~ 95 (260)
T 2xzm_W 80 ---RDKGYPTGLMDVVRIE 95 (260)
T ss_dssp ---CCTTCEECTTCEEEEG
T ss_pred ---ccCCCCCcEEEEEeEc
Confidence 4666777777888775
No 32
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.58 E-value=1.5 Score=41.22 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=40.2
Q ss_pred cHHHHHHhhcC--CCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeeccccccccc
Q 018538 111 PVLEYICRELN--LPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITH 188 (354)
Q Consensus 111 ~L~~~L~~~~~--lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~ 188 (354)
+|.-||...|+ ++.+++++++.+|.|. |||++. ++
T Consensus 43 PL~i~LRd~LkyA~t~~EakkIl~q~~Vk----------------------------------VDGkvr---------tD 79 (265)
T 3iz6_D 43 PLILIIRNRLKYALTYREVISILMQRHVL----------------------------------VDGKVR---------TD 79 (265)
T ss_dssp CHHHHHHHHHTTSSCSSSTHHHHHTTCCE----------------------------------ETTEEC---------CC
T ss_pred eeHHHhhhhhcccccHHHHHHHHHCCcEE----------------------------------ECCEEe---------cc
Confidence 68899998884 6778999999999999 999973 46
Q ss_pred cceeecCCcEEEEe
Q 018538 189 VDQIVEAGTYLRVH 202 (354)
Q Consensus 189 ~~~~V~~GD~I~V~ 202 (354)
..+.+--=|+|+|.
T Consensus 80 ~~~PvG~MDVIsI~ 93 (265)
T 3iz6_D 80 KTYPAGFMDVISIP 93 (265)
T ss_dssp TTCCCCTTCEEECC
T ss_pred CCCCCcEEEEEEEc
Confidence 66777667888876
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=77.19 E-value=1.5 Score=41.08 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=40.8
Q ss_pred cHHHHHHhhcC--CCHHHHHHHHHcCCEEEeeeCCCCCCCCchhhhhhhcccCCccccccccccCCeEEeeccccccccc
Q 018538 111 PVLEYICRELN--LPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITH 188 (354)
Q Consensus 111 ~L~~~L~~~~~--lSr~~~~~lI~~G~V~~~~~~~~~~~~~~~e~~r~~~~~~~~~v~~kr~~vnGk~vr~~~~~~~~~~ 188 (354)
+|.-||...|+ ++.+++++++.+|.|. |||++. ++
T Consensus 43 PL~i~LRd~LkyA~t~~EakkIl~q~~Vk----------------------------------VDGkvr---------tD 79 (261)
T 3u5c_E 43 PLIVFLRNRLKYALNGREVKAILMQRHVK----------------------------------VDGKVR---------TD 79 (261)
T ss_dssp EHHHHHHHTTCCCSSSHHHHHHHTTTCEE----------------------------------ETTBCC---------CC
T ss_pred eeHHHhhhhhcccccHHHHHHHHHCCcEE----------------------------------ECCEEe---------cc
Confidence 58999999884 6788999999999999 899873 56
Q ss_pred cceeecCCcEEEEe
Q 018538 189 VDQIVEAGTYLRVH 202 (354)
Q Consensus 189 ~~~~V~~GD~I~V~ 202 (354)
..+.+--=|+|+|.
T Consensus 80 ~~~PvG~MDVIsI~ 93 (261)
T 3u5c_E 80 TTYPAGFMDVITLD 93 (261)
T ss_dssp TTCEEETTCEEEET
T ss_pred CCCCCceEEEEEEc
Confidence 67777777888875
No 34
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=64.08 E-value=16 Score=26.86 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.4
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEe
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~ 202 (354)
+||+.+ ..++.|+.||.|.|.
T Consensus 55 vN~~~v----------~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 55 VNQTLV----------SFDHPLTDGDEVAFF 75 (81)
T ss_dssp ETTEEC----------CTTCBCCTTCEEEEE
T ss_pred ECCEEC----------CCCCCCCCCCEEEEe
Confidence 899863 567889999999886
No 35
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=63.14 E-value=8.8 Score=38.28 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=23.1
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEE
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVY 137 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~ 137 (354)
.+.++|.+.. --|+++++++|+.|+|+
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~ggv~ 384 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGGVS 384 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTCEE
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCCEE
Confidence 4888887654 56999999999999999
No 36
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=59.93 E-value=15 Score=36.58 Aligned_cols=27 Identities=11% Similarity=-0.134 Sum_probs=23.4
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEE
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVY 137 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~ 137 (354)
.+.++|.... --|+++++++|++|.|+
T Consensus 370 ~~~~~l~~~~l~~S~~earr~i~~ggv~ 397 (432)
T 1h3f_A 370 WVARLFTLAGLTPSNAEARRLIQNRGLR 397 (432)
T ss_dssp EHHHHHHHTTSSSSHHHHHHHHHTTCEE
T ss_pred cHHHHHHHhCCcccHHHHHHHHHhCCEE
Confidence 5888887654 67999999999999999
No 37
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=59.04 E-value=2 Score=42.76 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEE
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVY 137 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~ 137 (354)
.|.++|.... --|+++++++|+.|+|+
T Consensus 354 ~l~~lL~~agl~~SksEARRlI~~GgV~ 381 (420)
T 1jil_A 354 NIVEVLIETGISPSKRQAREDVNNGAIY 381 (420)
T ss_dssp ----------------------------
T ss_pred cHHHHHHHcCCccCHHHHHHHHHhCCEE
Confidence 5888887653 45999999999999999
No 38
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=52.57 E-value=29 Score=26.81 Aligned_cols=25 Identities=0% Similarity=-0.028 Sum_probs=18.2
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEe
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~ 202 (354)
+||+.+...+ -.++.|+.||.|.|.
T Consensus 57 vNg~iV~~~~------~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 57 RNKEIIGKER------YHEVELCDRDVIEIV 81 (87)
T ss_dssp ETTEEECGGG------TTTSBCCSSSEEEEE
T ss_pred ECCEECChhh------cCCcCCCCCCEEEEE
Confidence 8999863321 225789999999986
No 39
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=51.90 E-value=2.7 Score=33.54 Aligned_cols=22 Identities=9% Similarity=0.298 Sum_probs=18.7
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEec
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~~ 203 (354)
|||+. ++.++.|+.||+|+|+.
T Consensus 63 Vng~~----------v~~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 63 IFSRP----------IKLTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEECS----------CCTTCBCCTTCEEEECC
T ss_pred EcCEE----------CCCCccCCCCCEEEEEe
Confidence 88886 46888999999999984
No 40
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=48.54 E-value=5.8 Score=30.19 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.8
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEec
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~~ 203 (354)
|||+.+ ..++.|+.||.|+|..
T Consensus 46 VNG~~v----------~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 46 VDGRIV----------PIDYKVKTGEIIDVLT 67 (78)
T ss_dssp ETTEEE----------CTTCBCCTTCBEEEEE
T ss_pred ECCEEc----------CCCcccCCCCEEEEEc
Confidence 899874 7788999999999874
No 41
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=45.74 E-value=64 Score=23.28 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=17.5
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEec
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~~ 203 (354)
+||..+ ..+..|+.||.|.|..
T Consensus 44 vN~~~v----------~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 44 KNGQIV----------IDEEEIFDGDIIEVIR 65 (70)
T ss_dssp ETTEEC----------CTTSBCCTTCEEEEEE
T ss_pred ECCEEC----------CCcccCCCCCEEEEEe
Confidence 899874 5566899999999863
No 42
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=45.22 E-value=36 Score=29.51 Aligned_cols=27 Identities=7% Similarity=-0.050 Sum_probs=23.0
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEE
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVY 137 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~ 137 (354)
.|.++|.+.. --|+++++++|..|.|+
T Consensus 51 ~ivdlLv~aGLa~SKsEARRlI~qGGv~ 78 (164)
T 2ktl_A 51 TFSKVLWSAGLVASKSEGQRIINNNGAY 78 (164)
T ss_dssp SHHHHHHHHTSCSTHHHHHHHHHHTCEE
T ss_pred cHHHHHHHhCcccCHHHHHHHHHhCCEE
Confidence 5888776654 56999999999999999
No 43
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=43.47 E-value=48 Score=23.41 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=18.8
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEec
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~~ 203 (354)
+||+.+...+ ..++.|+.||.|.|..
T Consensus 34 vN~~~v~~~~------~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 34 LNEEAFLGLE------VPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEEGGG------CCCCCCCTTCEEEEEE
T ss_pred ECCEECCccc------cCCcCCCCCCEEEEEe
Confidence 8999864321 2457899999999863
No 44
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=42.11 E-value=29 Score=24.78 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=17.9
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEe
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~ 202 (354)
+||+.+...+ ..++.|+.||.|.|.
T Consensus 36 vN~~~v~~~~------~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 36 INQQIVPREQ------WAQHIVQDGDQILLF 60 (66)
T ss_dssp ETTEEECHHH------HTTCCCCTTEEECEE
T ss_pred ECCEECCchh------cCCcCCCCCCEEEEE
Confidence 8999863221 125789999999886
No 45
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=41.46 E-value=34 Score=25.33 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=18.9
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEec
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~~ 203 (354)
+||..|...+ -.++.|+.||.|+|..
T Consensus 35 vNg~iVpr~~------~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 35 LNYDVVPRGK------WDETPVTAGDEIEILT 60 (73)
T ss_dssp ESSSEECHHH------HTTCBCCTTCEEEEEC
T ss_pred ECCEECChHH------cCcccCCCCCEEEEEc
Confidence 8998864321 2357899999999873
No 46
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=41.04 E-value=23 Score=26.65 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.0
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEec
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~~ 203 (354)
|||+.+ ..++.|+.||.|.|..
T Consensus 63 VN~~~v----------~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 63 RNGEAA----------ALGEATAAGDELALFP 84 (89)
T ss_dssp ETTEEC----------CTTSBCCTTCEEEEEC
T ss_pred ECCEEC----------CCCcccCCCCEEEEEC
Confidence 899874 5678899999999873
No 47
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=37.67 E-value=43 Score=23.43 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=22.9
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEE
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVY 137 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~ 137 (354)
+|.++-...+ ..|.+.+.++++.|.|+
T Consensus 4 tl~EwA~~~~~~~s~~Tl~r~ar~G~I~ 31 (52)
T 2og0_A 4 TLQEWNARQRRPRSLETVRRWVRESRIF 31 (52)
T ss_dssp EHHHHHHTSSSCCCHHHHHHHHHTTCEE
T ss_pred eHHHHHHHhcCCCCHHHHHHHHHCCCCC
Confidence 3777776666 68999999999999999
No 48
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=37.14 E-value=7.1 Score=38.78 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=0.0
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEE
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVY 137 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~ 137 (354)
.+.++|.+.. --|+++++++|+.|+|+
T Consensus 353 ~~~~~l~~~gl~~S~~earr~i~~ggv~ 380 (419)
T 2ts1_A 353 PLVELLVSAGISPSKRQAREDIQNGAIY 380 (419)
T ss_dssp ----------------------------
T ss_pred cHHHHHHHhCCCCCHHHHHHHHHhCCEE
Confidence 4777776543 45999999999999999
No 49
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=33.62 E-value=58 Score=29.42 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=25.9
Q ss_pred cCCeEEeeccccccccccceeec-CCcEEEEecCCCCCCCCCCCCCCceeEeecCeEEEE
Q 018538 172 IKGKTVREAQKTFRITHVDQIVE-AGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVL 230 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~-~GD~I~V~~~~~~~~~~~~~~~~l~IlYED~~llVV 230 (354)
+||+.++ ....++ .||.|.|. ++.+.+..++++++
T Consensus 139 vNg~~i~----------~~~~L~~~GD~I~ig--------------~~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 139 INYELQE----------QLTNKAYIGDHIYVE--------------GIWLEVQADGLNVL 174 (238)
T ss_dssp ETTEECC----------SSEEEEETTCEEEET--------------TEEEEECSSEEEEE
T ss_pred ECCEEec----------cceeccCCcCEEEEC--------------CEEEEEECCEEEEE
Confidence 8888752 234689 99999885 46677788888874
No 50
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=32.39 E-value=19 Score=26.70 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=17.1
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEe
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~ 202 (354)
+||+.+ ..++.|+.||.|.|.
T Consensus 51 vNg~~v----------~~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 51 VNGKVV----------LEDDEVKDGDFVEVI 71 (77)
T ss_dssp ETTEEE----------CSSSCCCSSCCCBCS
T ss_pred ECCEEC----------CCCCCcCCCCEEEEE
Confidence 899874 456789999999876
No 51
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=28.77 E-value=30 Score=25.25 Aligned_cols=22 Identities=5% Similarity=0.296 Sum_probs=17.7
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEe
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~ 202 (354)
+||+.+ ...++.|+.||.|.+.
T Consensus 47 vN~~~v---------~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 47 LNDHLI---------DNLNTPLKDGDVISLL 68 (74)
T ss_dssp ESSSEE---------CCTTCCCCTTCEEEEE
T ss_pred ECCEEc---------CCCCcCCCCCCEEEEE
Confidence 888864 3567889999999887
No 52
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=25.97 E-value=29 Score=26.75 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=17.2
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEe
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~ 202 (354)
|||+.+ ..++.|+.||.|.|.
T Consensus 72 VNg~~v----------~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 72 VNGRYV----------SWDEELKDGDVVGVF 92 (98)
T ss_dssp ETTBCC----------CTTCBCCTTCEEEEE
T ss_pred ECCEEC----------CCCCCCCCCCEEEEE
Confidence 888863 567889999999886
No 53
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=25.12 E-value=57 Score=23.50 Aligned_cols=21 Identities=5% Similarity=0.189 Sum_probs=17.5
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEe
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~ 202 (354)
+||+.+ ..++.|+.||.|.|.
T Consensus 51 vNg~~v----------~~~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 51 VNEEFV----------QKSDFIQPNDTVALI 71 (77)
T ss_dssp ETTEEE----------CTTSEECTTCEEEEE
T ss_pred ECCEEC----------CCCCCcCCCCEEEEE
Confidence 899874 456889999999986
No 54
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=24.76 E-value=1.1e+02 Score=24.99 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=16.2
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEe
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~ 202 (354)
|||++| .....|+.||.|.+-
T Consensus 94 VNG~~V----------~~~~~L~~GD~I~lG 114 (124)
T 3fm8_A 94 VNGSSV----------SSPIQLHHGDRILWG 114 (124)
T ss_dssp ETTEEC----------CSCEEECTTCEEEET
T ss_pred ECCEEc----------CCcEECCCCCEEEEC
Confidence 899885 234679999999875
No 55
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=24.64 E-value=81 Score=23.54 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=23.2
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHcCCEE
Q 018538 111 PVLEYICREL-NLPPLFVADLIHFGAVY 137 (354)
Q Consensus 111 ~L~~~L~~~~-~lSr~~~~~lI~~G~V~ 137 (354)
+|.+|-...+ ..|...+.++++.|.|+
T Consensus 4 Tl~EwA~~~~~~~s~~Tl~r~ar~G~I~ 31 (72)
T 1pm6_A 4 TLQEWNARQRRPRSLETVRRWVRESRIF 31 (72)
T ss_dssp EHHHHHHHSSSCCCHHHHHHHHHHTCEE
T ss_pred eHHHHHHHhcCCCCHHHHHHHHHCCCCC
Confidence 3778777666 68999999999999999
No 56
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=21.72 E-value=41 Score=24.35 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=17.6
Q ss_pred cCCeEEeeccccccccccceeecCCcEEEEe
Q 018538 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202 (354)
Q Consensus 172 vnGk~vr~~~~~~~~~~~~~~V~~GD~I~V~ 202 (354)
.+|+.+...+ |..+.-++.||.|.+.
T Consensus 46 fdG~~l~~~~-----Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 46 FDGQPINETD-----TPAQLEMEDEDTIDVF 71 (72)
T ss_dssp ETTEECCTTC-----CTTTTTCCTTEEEEEE
T ss_pred ECCEEcCCCC-----CHHHcCCCCCCEEEEE
Confidence 5666654332 5667778899998775
Done!