Query 018539
Match_columns 354
No_of_seqs 115 out of 136
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 09:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11891 DUF3411: Domain of un 100.0 1.1E-71 2.4E-76 502.5 8.4 169 115-284 1-180 (180)
2 COG1512 Beta-propeller domains 81.6 1.6 3.4E-05 42.9 3.6 8 83-90 257-264 (271)
3 KOG3973 Uncharacterized conser 73.3 7 0.00015 40.4 5.6 15 70-84 361-375 (465)
4 PHA00370 III attachment protei 72.7 5.4 0.00012 39.5 4.5 13 246-258 236-248 (297)
5 PHA00370 III attachment protei 68.3 6.4 0.00014 39.1 4.0 14 186-200 239-252 (297)
6 KOG0921 Dosage compensation co 63.6 7.3 0.00016 44.7 3.8 14 82-95 1247-1260(1282)
7 KOG3915 Transcription regulato 62.4 7.2 0.00016 41.6 3.3 14 152-165 202-215 (641)
8 PTZ00146 fibrillarin; Provisio 61.4 13 0.00028 37.0 4.7 9 152-160 108-116 (293)
9 PTZ00146 fibrillarin; Provisio 58.7 16 0.00034 36.4 4.8 14 223-236 139-152 (293)
10 PF05918 API5: Apoptosis inhib 58.5 3.2 7E-05 44.5 0.0 13 57-69 516-528 (556)
11 KOG4096 Uncharacterized conser 54.0 2.1 4.6E-05 34.9 -1.7 56 222-277 16-71 (75)
12 PRK05325 hypothetical protein; 44.4 36 0.00078 35.4 4.9 14 310-323 357-370 (401)
13 COG4704 Uncharacterized protei 43.4 21 0.00045 32.6 2.6 34 33-66 107-140 (151)
14 COG3064 TolA Membrane protein 43.4 24 0.00052 36.2 3.3 43 104-146 304-346 (387)
15 PF10247 Romo1: Reactive mitoc 40.5 21 0.00045 28.6 2.0 52 221-276 15-66 (67)
16 PF05918 API5: Apoptosis inhib 38.8 10 0.00022 40.8 0.0 12 55-66 517-528 (556)
17 TIGR02877 spore_yhbH sporulati 34.7 62 0.0013 33.5 4.8 16 49-64 51-66 (371)
18 KOG4307 RNA binding protein RB 33.0 1.7E+02 0.0037 33.2 7.9 31 105-135 857-887 (944)
19 PF09579 Spore_YtfJ: Sporulati 30.6 29 0.00063 28.4 1.4 13 61-73 14-26 (83)
20 COG4371 Predicted membrane pro 30.1 57 0.0012 32.8 3.5 12 147-158 157-168 (334)
21 PF01102 Glycophorin_A: Glycop 29.6 56 0.0012 28.8 3.1 27 218-245 66-92 (122)
22 KOG3915 Transcription regulato 29.4 43 0.00093 36.1 2.7 10 49-58 38-47 (641)
23 PF13677 MotB_plug: Membrane M 27.6 81 0.0018 24.0 3.3 29 151-179 14-42 (58)
24 PF07096 DUF1358: Protein of u 26.6 80 0.0017 28.2 3.5 57 214-272 28-92 (124)
25 KOG0105 Alternative splicing f 26.6 1.4E+02 0.0031 28.9 5.4 13 60-72 76-88 (241)
26 KOG3074 Transcriptional regula 25.8 49 0.0011 32.7 2.2 8 265-272 199-206 (263)
27 PF15207 TMEM240: TMEM240 fami 22.8 90 0.0019 28.9 3.2 25 150-175 84-108 (180)
28 PF04285 DUF444: Protein of un 22.5 1.6E+02 0.0034 31.0 5.3 8 315-322 384-391 (421)
29 KOG1596 Fibrillarin and relate 22.3 1.3E+02 0.0027 30.4 4.3 20 149-168 132-151 (317)
30 PRK12799 motB flagellar motor 21.1 68 0.0015 33.6 2.4 28 152-179 25-52 (421)
31 PLN03134 glycine-rich RNA-bind 20.7 1.2E+02 0.0026 26.6 3.5 40 50-89 104-143 (144)
No 1
>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.
Probab=100.00 E-value=1.1e-71 Score=502.51 Aligned_cols=169 Identities=51% Similarity=0.849 Sum_probs=162.5
Q ss_pred hhhccCCCchhHHHHHHhhhhheeeeEeeccCCCcchhHHHHHHHhhhHHHHHHHHhhhhcccccccC---C----CCCc
Q 018539 115 SRVAADPQFPFKVLMEQLVGVTACVIGDMASRPNFGLNELDFVFSTLVVGSIMNFTLMYLLAPTLSAA---P----QNLP 187 (354)
Q Consensus 115 ~RlLADP~FlfKL~~E~vI~i~~~v~aE~~~R~~~f~~ElDfV~sdvv~gsv~nf~LVwlLAPt~s~s---a----~~l~ 187 (354)
|||||||+|||||++||+||++|+++|||++|+|+||+|||||+||+++++|+||+||||||||++.. . ..++
T Consensus 1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~~~~~~ 80 (180)
T PF11891_consen 1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSPGGGLQ 80 (180)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCcccccccchHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999941 1 3578
Q ss_pred cccccCCCCCccCCC----CCchhhhHHHHhhcchhhhhhhhhHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCchhhhHH
Q 018539 188 GLFASCPTSHMFEPG----AFSFANRLGTFVFKGLVFASVGFAAGLVGTAISNGLIKLRKKMDPAFETPNKPPPTVLNAL 263 (354)
Q Consensus 188 ~~f~s~Ppnn~Fe~~----~fsl~qR~~a~v~KGa~l~~VG~~aGlvG~~lsN~Li~~Rk~~d~s~e~~~~~pPvl~tAl 263 (354)
++|++|| +|+||++ +||++||++||+|||++|++|||+||++|+++||+|+++||++||+||.++++|||++||+
T Consensus 81 ~~~~~~P-~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~~rk~~~~~~e~~~~~ppv~~ta~ 159 (180)
T PF11891_consen 81 KFLGSLP-NNAFQKGYPGRSFSLAQRIGAFVYKGAKLAAVGFIAGLVGTGLSNALIAARKKVDPSFEPSVPVPPVLKTAL 159 (180)
T ss_pred HHHHhCh-HHHhccCCCCCcccHHHHHHHHHHcchHhhhhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHH
Confidence 8999999 6899986 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccchhhHHHHHhHH
Q 018539 264 TWSLHMGISSNFRYQTLNGIE 284 (354)
Q Consensus 264 ~wg~fMGvSSNlRYQil~GiE 284 (354)
+||+|||+|||+|||+|||+|
T Consensus 160 ~~g~fmGvSsNlRYQil~GiE 180 (180)
T PF11891_consen 160 GWGAFMGVSSNLRYQILNGIE 180 (180)
T ss_pred HHHHHHhhhHhHHHHHHcCCC
Confidence 999999999999999999997
No 2
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=81.55 E-value=1.6 Score=42.91 Aligned_cols=8 Identities=75% Similarity=1.485 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 018539 83 GGGDGSGG 90 (354)
Q Consensus 83 ggg~~~gg 90 (354)
|||+++||
T Consensus 257 gGGgS~GG 264 (271)
T COG1512 257 GGGGSSGG 264 (271)
T ss_pred CCCCCCCC
Confidence 44444444
No 3
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=73.27 E-value=7 Score=40.44 Aligned_cols=15 Identities=60% Similarity=1.061 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCCCC
Q 018539 70 GSYGTGHGKGGGGGG 84 (354)
Q Consensus 70 g~~g~~gg~~ggggg 84 (354)
|++|+-||.|||-||
T Consensus 361 g~Gg~~gGrGgGRGg 375 (465)
T KOG3973|consen 361 GSGGNWGGRGGGRGG 375 (465)
T ss_pred CCCCCCCCCCCCCCC
Confidence 344444444444443
No 4
>PHA00370 III attachment protein
Probab=72.75 E-value=5.4 Score=39.53 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCch
Q 018539 246 DPAFETPNKPPPT 258 (354)
Q Consensus 246 d~s~e~~~~~pPv 258 (354)
.|++...+..||.
T Consensus 236 ~PslP~~n~C~~F 248 (297)
T PHA00370 236 RPSLPEGHGCTPF 248 (297)
T ss_pred ccCCCCCCCCCcc
Confidence 3444433444443
No 5
>PHA00370 III attachment protein
Probab=68.31 E-value=6.4 Score=39.06 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=7.0
Q ss_pred CccccccCCCCCccC
Q 018539 186 LPGLFASCPTSHMFE 200 (354)
Q Consensus 186 l~~~f~s~Ppnn~Fe 200 (354)
||.- ..|||=-+||
T Consensus 239 lP~~-n~C~~FV~~~ 252 (297)
T PHA00370 239 LPEG-HGCTPFVFAQ 252 (297)
T ss_pred CCCC-CCCCcceeec
Confidence 4433 5777643334
No 6
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=63.63 E-value=7.3 Score=44.66 Aligned_cols=14 Identities=64% Similarity=1.203 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCCC
Q 018539 82 GGGGDGSGGFSGDG 95 (354)
Q Consensus 82 gggg~~~gg~~~d~ 95 (354)
|||+-++|||++..
T Consensus 1247 gggyrgsGGfgrgg 1260 (1282)
T KOG0921|consen 1247 GGGYRGSGGFGRGG 1260 (1282)
T ss_pred CCCccCCCCcCCCC
Confidence 33344455554433
No 7
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=62.44 E-value=7.2 Score=41.62 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=10.2
Q ss_pred hHHHHHHHhhhHHH
Q 018539 152 NELDFVFSTLVVGS 165 (354)
Q Consensus 152 ~ElDfV~sdvv~gs 165 (354)
+-+|+++=.+|-++
T Consensus 202 QafdlFLKhlVGGL 215 (641)
T KOG3915|consen 202 QAFDLFLKHLVGGL 215 (641)
T ss_pred HHHHHHHHHHhchH
Confidence 56888888877554
No 8
>PTZ00146 fibrillarin; Provisional
Probab=61.43 E-value=13 Score=37.01 Aligned_cols=9 Identities=11% Similarity=-0.171 Sum_probs=3.5
Q ss_pred hHHHHHHHh
Q 018539 152 NELDFVFST 160 (354)
Q Consensus 152 ~ElDfV~sd 160 (354)
.+||=+=|-
T Consensus 108 R~w~p~rSK 116 (293)
T PTZ00146 108 RVWNPFRSK 116 (293)
T ss_pred eeeCCcccH
Confidence 344433333
No 9
>PTZ00146 fibrillarin; Provisional
Probab=58.66 E-value=16 Score=36.38 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=6.0
Q ss_pred hhhhHhHHHHHHHH
Q 018539 223 VGFAAGLVGTAISN 236 (354)
Q Consensus 223 VG~~aGlvG~~lsN 236 (354)
+|...|.....++.
T Consensus 139 LGaG~G~~t~~lAd 152 (293)
T PTZ00146 139 LGAASGTTVSHVSD 152 (293)
T ss_pred eCCcCCHHHHHHHH
Confidence 34444444444443
No 10
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=58.46 E-value=3.2 Score=44.51 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=0.0
Q ss_pred CCCceeeccCCCC
Q 018539 57 SPPRFELSSTGGG 69 (354)
Q Consensus 57 ~~~~~~~~~~g~~ 69 (354)
.+|+.+.+.-+++
T Consensus 516 ~~p~~k~ss~~~~ 528 (556)
T PF05918_consen 516 VPPSGKYSSNGGN 528 (556)
T ss_dssp -------------
T ss_pred CCCCCCCcCCCCC
Confidence 5677775544433
No 11
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.03 E-value=2.1 Score=34.95 Aligned_cols=56 Identities=27% Similarity=0.207 Sum_probs=34.4
Q ss_pred hhhhhHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHHHHhhccchhhH
Q 018539 222 SVGFAAGLVGTAISNGLIKLRKKMDPAFETPNKPPPTVLNALTWSLHMGISSNFRY 277 (354)
Q Consensus 222 ~VG~~aGlvG~~lsN~Li~~Rk~~d~s~e~~~~~pPvl~tAl~wg~fMGvSSNlRY 277 (354)
.+|+..|....++=-....+|-.+.+.--....-.-++.+|.++|+||++-+-+||
T Consensus 16 ~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~ 71 (75)
T KOG4096|consen 16 MMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRC 71 (75)
T ss_pred HHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhheec
Confidence 34444444444444444557766655322222224578899999999999998887
No 12
>PRK05325 hypothetical protein; Provisional
Probab=44.38 E-value=36 Score=35.44 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHhc
Q 018539 310 LGGMSFVLLARMTG 323 (354)
Q Consensus 310 lG~~~fVd~AR~tG 323 (354)
..+..|-.|.+...
T Consensus 357 ~~~~l~~~y~~i~~ 370 (401)
T PRK05325 357 RHQTLWREYERLQD 370 (401)
T ss_pred CchHHHHHHHHhhc
Confidence 56778888876544
No 13
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.43 E-value=21 Score=32.63 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=29.7
Q ss_pred CCCCCCCCCCccCCCccceecccCCCCceeeccC
Q 018539 33 PYRLPNNPASFSQNHSLSILHSKVSPPRFELSST 66 (354)
Q Consensus 33 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (354)
+|-+|.-|++|+||++.|.=.++|+.-.+...||
T Consensus 107 ~fGiP~EpfGfSrna~~rtg~PaF~dAAf~v~~~ 140 (151)
T COG4704 107 PFGIPKEPFGFSRNASIRTGPPAFSDAAFTVTGG 140 (151)
T ss_pred CCCCccCCcccccCCccccCCCcccceeEEEecC
Confidence 5788999999999999999999998888887654
No 14
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=43.41 E-value=24 Score=36.21 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=30.5
Q ss_pred ChhHHHHHhhhhhhccCCCchhHHHHHHhhhhheeeeEeeccC
Q 018539 104 GIWGLWLNGWRSRVAADPQFPFKVLMEQLVGVTACVIGDMASR 146 (354)
Q Consensus 104 g~~~~~~~GfR~RlLADP~FlfKL~~E~vI~i~~~v~aE~~~R 146 (354)
...|-+-+.++.|+|-+|+|--|.|.=.+--+=..++..|+.-
T Consensus 304 ~Yag~ik~~Iq~rfl~~~sf~gK~C~l~ikL~pdGtl~~~~~~ 346 (387)
T COG3064 304 QYAGQIKSAIQSRFLDADSFAGKTCRLRIKLAPDGTLLDIKPE 346 (387)
T ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEEEcCCcceeecccc
Confidence 5567778889999999999999876433333334456777665
No 15
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=40.53 E-value=21 Score=28.61 Aligned_cols=52 Identities=21% Similarity=0.098 Sum_probs=34.5
Q ss_pred hhhhhhHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHHHHhhccchhh
Q 018539 221 ASVGFAAGLVGTAISNGLIKLRKKMDPAFETPNKPPPTVLNALTWSLHMGISSNFR 276 (354)
Q Consensus 221 ~~VG~~aGlvG~~lsN~Li~~Rk~~d~s~e~~~~~pPvl~tAl~wg~fMGvSSNlR 276 (354)
++||.+.|++-...+ .+|.+..+..-......-++.++.++|.||++=+=+|
T Consensus 15 ~~VG~~~G~l~G~~~----~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IR 66 (67)
T PF10247_consen 15 GAVGGAFGALFGTFS----AFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIR 66 (67)
T ss_pred hHHHhhhhhhhhhHH----HhccCCCCcchHhHHhHHHhcchhHHHHHHhhhcccc
Confidence 456666666555444 4677766544333344567889999999999977665
No 16
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=38.76 E-value=10 Score=40.84 Aligned_cols=12 Identities=8% Similarity=-0.233 Sum_probs=0.0
Q ss_pred cCCCCceeeccC
Q 018539 55 KVSPPRFELSST 66 (354)
Q Consensus 55 ~~~~~~~~~~~~ 66 (354)
+++-.+..-+++
T Consensus 517 ~p~~k~ss~~~~ 528 (556)
T PF05918_consen 517 PPSGKYSSNGGN 528 (556)
T ss_dssp ------------
T ss_pred CCCCCCcCCCCC
Confidence 334444444444
No 17
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=34.67 E-value=62 Score=33.52 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=7.8
Q ss_pred cceecccCCCCceeec
Q 018539 49 LSILHSKVSPPRFELS 64 (354)
Q Consensus 49 ~~~~~~~~~~~~~~~~ 64 (354)
++|=-..+++|++..+
T Consensus 51 V~IPir~l~Ep~F~~g 66 (371)
T TIGR02877 51 IKVPIRGLKEYRFRYD 66 (371)
T ss_pred EEccCCCCccceEEeC
Confidence 3333333456666655
No 18
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=32.96 E-value=1.7e+02 Score=33.23 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=20.0
Q ss_pred hhHHHHHhhhhhhccCCCchhHHHHHHhhhh
Q 018539 105 IWGLWLNGWRSRVAADPQFPFKVLMEQLVGV 135 (354)
Q Consensus 105 ~~~~~~~GfR~RlLADP~FlfKL~~E~vI~i 135 (354)
++.-.+.--==|+++=-.|+||+-+|.+++.
T Consensus 857 ~~~~~~~~pGp~V~~~~n~Pf~v~l~dI~~F 887 (944)
T KOG4307|consen 857 ELMELIKSPGPRVLSCNNFPFDVTLEDIVEF 887 (944)
T ss_pred HHHHhcCCCCCeEEEecCCCccccHHHHHHH
Confidence 3333333333358888888888888888776
No 19
>PF09579 Spore_YtfJ: Sporulation protein YtfJ (Spore_YtfJ); InterPro: IPR014229 Proteins in this entry, exemplified by YtfJ of Bacillus subtilis, are encoded by bacterial genomes if, and only if, the species is capable of endospore formation. YtfJ was confirmed in spores of B. subtilis; it appears to be expressed in the forespore under control of SigF [].
Probab=30.60 E-value=29 Score=28.37 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=6.3
Q ss_pred eeeccCCCCCCCC
Q 018539 61 FELSSTGGGGSYG 73 (354)
Q Consensus 61 ~~~~~~g~~g~~g 73 (354)
+++++|+|++...
T Consensus 14 VsfGfG~Gg~~~~ 26 (83)
T PF09579_consen 14 VSFGFGAGGGEGK 26 (83)
T ss_pred EEEEEEEeCCCCC
Confidence 4555555444433
No 20
>COG4371 Predicted membrane protein [Function unknown]
Probab=30.15 E-value=57 Score=32.80 Aligned_cols=12 Identities=17% Similarity=-0.022 Sum_probs=7.3
Q ss_pred CCcchhHHHHHH
Q 018539 147 PNFGLNELDFVF 158 (354)
Q Consensus 147 ~~~f~~ElDfV~ 158 (354)
.+..+.|+|=..
T Consensus 157 a~elk~eL~~iA 168 (334)
T COG4371 157 ADELKSELQRIA 168 (334)
T ss_pred hHHHHHHHHHHH
Confidence 345577777554
No 21
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.61 E-value=56 Score=28.79 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=17.5
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHhhhc
Q 018539 218 LVFASVGFAAGLVGTAISNGLIKLRKKM 245 (354)
Q Consensus 218 a~l~~VG~~aGlvG~~lsN~Li~~Rk~~ 245 (354)
.-+-.+|.+||+||.-+--..+ +||..
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~-irR~~ 92 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYC-IRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHS
T ss_pred eeehhHHHHHHHHHHHHHHHHH-HHHHh
Confidence 3455678889999987755544 34443
No 22
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=29.40 E-value=43 Score=36.07 Aligned_cols=10 Identities=20% Similarity=0.022 Sum_probs=4.2
Q ss_pred cceecccCCC
Q 018539 49 LSILHSKVSP 58 (354)
Q Consensus 49 ~~~~~~~~~~ 58 (354)
-.+-|+.|-+
T Consensus 38 a~~~~~~~~~ 47 (641)
T KOG3915|consen 38 ASSGPTLFRP 47 (641)
T ss_pred cccCccccCc
Confidence 3344444433
No 23
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=27.62 E-value=81 Score=23.98 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=24.8
Q ss_pred hhHHHHHHHhhhHHHHHHHHhhhhccccc
Q 018539 151 LNELDFVFSTLVVGSIMNFTLMYLLAPTL 179 (354)
Q Consensus 151 ~~ElDfV~sdvv~gsv~nf~LVwlLAPt~ 179 (354)
-..|-+-++|+++...+=|+++|.++-+-
T Consensus 14 ~~~WlvtyaDlmTLLl~fFVlL~s~s~~d 42 (58)
T PF13677_consen 14 SPRWLVTYADLMTLLLAFFVLLFSMSSVD 42 (58)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45788999999999999999999887554
No 24
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=26.62 E-value=80 Score=28.21 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=32.2
Q ss_pred hhcchhhhhhhhhHhHHHHHHHHHHHHHhhhcCCCCCC--------CCCCCchhhhHHHHHHHhhcc
Q 018539 214 VFKGLVFASVGFAAGLVGTAISNGLIKLRKKMDPAFET--------PNKPPPTVLNALTWSLHMGIS 272 (354)
Q Consensus 214 v~KGa~l~~VG~~aGlvG~~lsN~Li~~Rk~~d~s~e~--------~~~~pPvl~tAl~wg~fMGvS 272 (354)
++.++.|+.|+.++-++|-+.+-+ .+||+-..-|.. +.....+-..||+||..+.+.
T Consensus 28 ~~~~~FL~~Va~~s~~aGF~~tl~--~aKKk~p~~F~kg~~~~~~l~esGasLAlRALgWGTlyA~~ 92 (124)
T PF07096_consen 28 IKGGAFLGGVAGASALAGFGTTLA--LAKKKSPKWFSKGISQTKALHESGASLALRALGWGTLYAVC 92 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCcHHHhccCcCcccCCcchHHHHHHHHhHHHHHHHH
Confidence 344556667877777776665554 356653323321 111222345799999887763
No 25
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=26.61 E-value=1.4e+02 Score=28.94 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=7.7
Q ss_pred ceeeccCCCCCCC
Q 018539 60 RFELSSTGGGGSY 72 (354)
Q Consensus 60 ~~~~~~~g~~g~~ 72 (354)
++++..||..++.
T Consensus 76 RVEfprggr~s~~ 88 (241)
T KOG0105|consen 76 RVEFPRGGRSSSD 88 (241)
T ss_pred EEEeccCCCcccc
Confidence 4677777754333
No 26
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=25.84 E-value=49 Score=32.69 Aligned_cols=8 Identities=25% Similarity=0.306 Sum_probs=4.8
Q ss_pred HHHHhhcc
Q 018539 265 WSLHMGIS 272 (354)
Q Consensus 265 wg~fMGvS 272 (354)
||.||=+|
T Consensus 199 ~G~f~riS 206 (263)
T KOG3074|consen 199 RGVFVRIS 206 (263)
T ss_pred ccceEEEE
Confidence 56666655
No 27
>PF15207 TMEM240: TMEM240 family
Probab=22.80 E-value=90 Score=28.91 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=20.0
Q ss_pred chhHHHHHHHhhhHHHHHHHHhhhhc
Q 018539 150 GLNELDFVFSTLVVGSIMNFTLMYLL 175 (354)
Q Consensus 150 f~~ElDfV~sdvv~gsv~nf~LVwlL 175 (354)
-++|+|+++- ++.|.+..-+||||=
T Consensus 84 tkqeidlmlg-lllgfcisw~l~wmd 108 (180)
T PF15207_consen 84 TKQEIDLMLG-LLLGFCISWFLVWMD 108 (180)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 4799999874 666888888899973
No 28
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=22.48 E-value=1.6e+02 Score=31.02 Aligned_cols=8 Identities=0% Similarity=0.090 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 018539 315 FVLLARMT 322 (354)
Q Consensus 315 fVd~AR~t 322 (354)
|..+.+..
T Consensus 384 ~~~~~~~~ 391 (421)
T PF04285_consen 384 WREYEELK 391 (421)
T ss_pred HHHHHHHh
Confidence 55554443
No 29
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=22.30 E-value=1.3e+02 Score=30.45 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=8.6
Q ss_pred cchhHHHHHHHhhhHHHHHH
Q 018539 149 FGLNELDFVFSTLVVGSIMN 168 (354)
Q Consensus 149 ~f~~ElDfV~sdvv~gsv~n 168 (354)
+-|+-+-==|+.-+++-+=|
T Consensus 132 RVWnPfrSKLAA~I~gGvdn 151 (317)
T KOG1596|consen 132 RVWNPFRSKLAAGILGGVDN 151 (317)
T ss_pred EEeChHHHHHHHHhhcCccc
Confidence 34444444444444443333
No 30
>PRK12799 motB flagellar motor protein MotB; Reviewed
Probab=21.08 E-value=68 Score=33.61 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=25.1
Q ss_pred hHHHHHHHhhhHHHHHHHHhhhhccccc
Q 018539 152 NELDFVFSTLVVGSIMNFTLMYLLAPTL 179 (354)
Q Consensus 152 ~ElDfV~sdvv~gsv~nf~LVwlLAPt~ 179 (354)
..|=.-++|+|++..+=|+|+|+++=+-
T Consensus 25 gaWkVAYADfvTlLMAFFlLLwsmSsvd 52 (421)
T PRK12799 25 GSWKIAYADFMTAMMAFFLVMWLLAVSS 52 (421)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcCC
Confidence 4799999999999999999999998653
No 31
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=20.72 E-value=1.2e+02 Score=26.60 Aligned_cols=40 Identities=33% Similarity=0.521 Sum_probs=0.0
Q ss_pred ceecccCCCCceeeccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018539 50 SILHSKVSPPRFELSSTGGGGSYGTGHGKGGGGGGGDGSG 89 (354)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~g~~g~~gg~~gggggg~~~g 89 (354)
+.++-+...++-.-...++++.++.+++++.||++|+.+|
T Consensus 104 r~l~V~~a~~~~~~~~~~~g~~~~~~~~g~~gg~~g~~~g 143 (144)
T PLN03134 104 RHIRVNPANDRPSAPRAYGGGGGYSGGGGGYGGGGDGGGG 143 (144)
T ss_pred EEEEEEeCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Done!