Query 018539
Match_columns 354
No_of_seqs 115 out of 136
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 16:50:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018539.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018539hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jfga1 c.5.1.1 (A:1-93) UDP-N 12.3 31 0.0022 24.3 0.9 42 215-260 3-44 (93)
2 d2fefa1 a.29.11.1 (A:6-129) Hy 11.0 60 0.0044 25.4 2.3 52 258-324 64-115 (124)
3 d1dwka1 a.35.1.4 (A:1-86) Cyan 7.1 1.1E+02 0.0079 22.5 2.2 36 232-267 12-50 (86)
4 d1ldna1 c.2.1.5 (A:15-162) Lac 6.1 70 0.0051 24.6 0.7 23 216-240 5-27 (148)
5 d1puza_ a.218.1.1 (A:) Hypothe 5.9 1E+02 0.0074 21.9 1.5 16 149-164 18-33 (82)
6 d1rkxa_ c.2.1.2 (A:) CDP-gluco 5.8 91 0.0066 25.5 1.3 26 214-240 5-30 (356)
7 d3cx5i1 f.23.14.1 (I:4-58) Sub 5.6 53 0.0038 22.7 -0.4 27 127-154 23-49 (55)
8 d1lnza1 b.117.1.1 (A:1-157) Ob 4.8 2.2E+02 0.016 22.4 3.0 7 64-70 12-18 (157)
9 d1x3zb1 a.189.1.1 (B:253-309) 4.6 64 0.0047 22.2 -0.5 22 110-131 35-56 (57)
10 d1ppjw_ f.23.14.1 (W:) Subunit 4.5 68 0.005 22.6 -0.4 27 127-154 29-55 (62)
No 1
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=12.25 E-value=31 Score=24.32 Aligned_cols=42 Identities=19% Similarity=0.433 Sum_probs=25.6
Q ss_pred hcchhhhhhhhhHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCchhh
Q 018539 215 FKGLVFASVGFAAGLVGTAISNGLIKLRKKMDPAFETPNKPPPTVL 260 (354)
Q Consensus 215 ~KGa~l~~VG~~aGlvG~~lsN~Li~~Rk~~d~s~e~~~~~pPvl~ 260 (354)
+|+.++..+|+ |.-|.++++.|. ++..+-...++.+.++...
T Consensus 3 ~~~K~v~ViGl--G~sG~s~a~~L~--~~g~~v~~~D~~~~~~~~~ 44 (93)
T d2jfga1 3 YQGKNVVIIGL--GLTGLSCVDFFL--ARGVTPRVMDTRMTPPGLD 44 (93)
T ss_dssp CTTCCEEEECC--SHHHHHHHHHHH--HTTCCCEEEESSSSCTTGG
T ss_pred cCCCEEEEEeE--CHHHHHHHHHHH--HCCCEEEEeeCCcCchhHH
Confidence 57888888887 666888888774 3444333333444445443
No 2
>d2fefa1 a.29.11.1 (A:6-129) Hypothetical protein PA2201 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.00 E-value=60 Score=25.42 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHhhccchhhHHHHHhHHHHHHhhCChhhhhhhheeeeeccchhhhHHHHHHHHHhcc
Q 018539 258 TVLNALTWSLHMGISSNFRYQTLNGIEFLLAKSTPEVVFKSSVVVLRCLNNVLGGMSFVLLARMTGS 324 (354)
Q Consensus 258 vl~tAl~wg~fMGvSSNlRYQil~GiEr~l~~~lp~~l~~~~s~avR~~Nn~lG~~~fVd~AR~tGv 324 (354)
-+.|+-.|+- +-.|.|.-+|.|||+-+..-.-..++.- =...|+|+||..|-
T Consensus 64 ALEn~W~W~~---~~~nA~~LLl~gID~GL~G~vLRpiY~E------------~AALWlD~a~~~~~ 115 (124)
T d2fefa1 64 ALENAWAWGQ---AAENASTLLLKAIDRGLAGAELRSIYLE------------TAALWLDYSRLLGA 115 (124)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHTCCHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHhHHHHHHHHHhcCCchhHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 4567777774 4679999999999985533211111211 13579999999984
No 3
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.12 E-value=1.1e+02 Score=22.50 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhcCCCCC---CCCCCCchhhhHHHHHH
Q 018539 232 TAISNGLIKLRKKMDPAFE---TPNKPPPTVLNALTWSL 267 (354)
Q Consensus 232 ~~lsN~Li~~Rk~~d~s~e---~~~~~pPvl~tAl~wg~ 267 (354)
..++..|+.+|++.+.+|+ ...-..+++.+|+++|-
T Consensus 12 ~~lte~Il~AK~~kgltw~~IA~~iG~s~vwvtaa~lGQ 50 (86)
T d1dwka1 12 LDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQ 50 (86)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhcC
Confidence 3578889999999888885 34556888888888774
No 4
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.12 E-value=70 Score=24.56 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=19.4
Q ss_pred cchhhhhhhhhHhHHHHHHHHHHHH
Q 018539 216 KGLVFASVGFAAGLVGTAISNGLIK 240 (354)
Q Consensus 216 KGa~l~~VG~~aGlvG~~lsN~Li~ 240 (354)
++.|++.|| ||-+|..++..|..
T Consensus 5 ~~~KI~IiG--aG~vG~~~a~~l~~ 27 (148)
T d1ldna1 5 GGARVVVIG--AGFVGASYVFALMN 27 (148)
T ss_dssp TSCEEEEEC--CSHHHHHHHHHHHH
T ss_pred CCCeEEEEC--cCHHHHHHHHHHHh
Confidence 567899999 59999999998854
No 5
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=5.91 E-value=1e+02 Score=21.89 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=12.3
Q ss_pred cchhHHHHHHHhhhHH
Q 018539 149 FGLNELDFVFSTLVVG 164 (354)
Q Consensus 149 ~f~~ElDfV~sdvv~g 164 (354)
|+..|+|+++..-+-.
T Consensus 18 RG~kElDllL~~F~~~ 33 (82)
T d1puza_ 18 RGLLELDLIFGRFMEK 33 (82)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 7889999988766543
No 6
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=5.84 E-value=91 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.3
Q ss_pred hhcchhhhhhhhhHhHHHHHHHHHHHH
Q 018539 214 VFKGLVFASVGFAAGLVGTAISNGLIK 240 (354)
Q Consensus 214 v~KGa~l~~VG~~aGlvG~~lsN~Li~ 240 (354)
|+|+.+..+.|. +|.+|..|+..|+.
T Consensus 5 ~~~~KkILVTG~-tGfIGs~lv~~Ll~ 30 (356)
T d1rkxa_ 5 FWQGKRVFVTGH-TGFKGGWLSLWLQT 30 (356)
T ss_dssp HHTTCEEEEETT-TSHHHHHHHHHHHH
T ss_pred hhCCCEEEEECC-CCHHHHHHHHHHHH
Confidence 488899988885 49999999999975
No 7
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.55 E-value=53 Score=22.68 Aligned_cols=27 Identities=0% Similarity=0.111 Sum_probs=22.3
Q ss_pred HHHHHhhhhheeeeEeeccCCCcchhHH
Q 018539 127 VLMEQLVGVTACVIGDMASRPNFGLNEL 154 (354)
Q Consensus 127 L~~E~vI~i~~~v~aE~~~R~~~f~~El 154 (354)
.+.|.++|.+..-+||--+|++. |+++
T Consensus 23 f~fe~~fD~~~d~~we~~NkGKl-WkDI 49 (55)
T d3cx5i1 23 FVFQTVFDTAITSWYENHNKGKL-WKDV 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS-HHHH
T ss_pred HHHHHHHHHHHHHHHHhccCccc-HHHH
Confidence 46788899999999999999987 6654
No 8
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=4.77 E-value=2.2e+02 Score=22.38 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=2.9
Q ss_pred ccCCCCC
Q 018539 64 SSTGGGG 70 (354)
Q Consensus 64 ~~~g~~g 70 (354)
+|-||+|
T Consensus 12 aG~GG~G 18 (157)
T d1lnza1 12 GGDGGNG 18 (157)
T ss_dssp CCCCCCC
T ss_pred ECCCCCc
Confidence 3344444
No 9
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.60 E-value=64 Score=22.22 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=17.3
Q ss_pred HHhhhhhhccCCCchhHHHHHH
Q 018539 110 LNGWRSRVAADPQFPFKVLMEQ 131 (354)
Q Consensus 110 ~~GfR~RlLADP~FlfKL~~E~ 131 (354)
.+-+||.+++||.-...++.|-
T Consensus 35 yp~lre~im~npe~fismllea 56 (57)
T d1x3zb1 35 YPQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHC
T ss_pred hHHHHHHHHhCHHHHHHHHHhh
Confidence 4678999999999777777663
No 10
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.54 E-value=68 Score=22.59 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=21.7
Q ss_pred HHHHHhhhhheeeeEeeccCCCcchhHH
Q 018539 127 VLMEQLVGVTACVIGDMASRPNFGLNEL 154 (354)
Q Consensus 127 L~~E~vI~i~~~v~aE~~~R~~~f~~El 154 (354)
++.|.++|.++.-+||--+|++. |+.+
T Consensus 29 f~fE~~fD~~~d~iwe~~NkGKl-WKDI 55 (62)
T d1ppjw_ 29 LFFERAFDQGADAIYEHINEGKL-WKHI 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS-HHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccc-hHHH
Confidence 46788888888889999999987 5543
Done!