BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018541
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QWR|A Chain A, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
pdb|1QWR|B Chain B, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
Length = 319
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 256 LRRVAVEPSDHFFLPSSTELHSQESGS--LQDERNSRSVY 293
LRR+ ++P D +++PS T LH+ G+ L+ ++NS + Y
Sbjct: 157 LRRIKIKPGDFYYVPSGT-LHALCKGALVLETQQNSDATY 195
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 139 WRALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEY 198
W + D+ P L+I ++DE P + F H+ DV+ G+ H H E
Sbjct: 253 WSVIDRLPDVTAPVLVIAGEHDEATP-KTWQPFVDHI----PDVRSHVFPGTSHCTHLE- 306
Query: 199 YPIQYRAAITGLLEK 213
P ++RA + L +
Sbjct: 307 KPEEFRAVVAQFLHQ 321
>pdb|1TT4|A Chain A, Structure Of Np459575, A Predicted Glutathione Synthase
From Salmonella Typhimurium
pdb|1TT4|B Chain B, Structure Of Np459575, A Predicted Glutathione Synthase
From Salmonella Typhimurium
Length = 396
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 14 LYMDLNPFPIFGTQELRIQTCPVVF---VALSGGTKACMH 50
L+ D+ P P FGT E+R+ P+ + ++G +A H
Sbjct: 247 LHWDIRPSPAFGTVEVRVMDTPLTLDHAINMAGLIQATAH 286
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 138 YWRALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGH 195
++ + + +P+LI+ D DE+ P + + F + V+ V ++G+ H H
Sbjct: 139 FYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQ---ISSPVEFVVMSGASHFFH 193
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 138 YWRALYNSVD----LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPH 192
+W L +++D P + ++ND+ Q+ +Y+ H+ G KL L GS H
Sbjct: 185 HWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT--GHCKLYSLLGSSH 241
>pdb|4A8E|A Chain A, The Structure Of A Dimeric Xer Recombinase From Archaea
Length = 292
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 161 ELAPQQVIYNFARHLLALGGDVKLVK 186
EL P Q+ ++FA H+L G D+++++
Sbjct: 222 ELTPHQLRHSFATHMLERGIDIRIIQ 247
>pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd
Length = 290
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 39/193 (20%)
Query: 54 QIIQATCEGQ-LNVDESRLIRSCVAGQIYDSSPVDFT-SDFCARFGLHPTIQK------I 105
+++QA Q L + + ++ A + S V T SD R G+ I K +
Sbjct: 118 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 177
Query: 106 PGLSKLVSWVAKGVTSG----LDGLCL-TRFEPQRAE------YWRALYNSVDLGTPFLI 154
P + V W+ + G L+G+ + F QRA+ +W + + L
Sbjct: 178 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA----- 232
Query: 155 ICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 214
D+++L+P + + FA HLL G D+++V++ +GH + Q
Sbjct: 233 -GIDSEKLSPHVLRHAFATHLLNHGADLRVVQML----LGHSDLSTTQI----------Y 277
Query: 215 ASVYSQRIRQLGE 227
V ++R+RQL +
Sbjct: 278 THVATERLRQLHQ 290
>pdb|3C9P|A Chain A, Crystal Structure Of Uncharacterized Protein Sp1917
Length = 123
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 100 PTIQKIPGLSKLVSWVAKGVTS 121
P Q+I L KLV W+AKG TS
Sbjct: 91 PLXQEIRRLDKLVDWLAKGKTS 112
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 154 IICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG--SPHIGHYEYYPIQYRAAITGLL 211
++C +L ++V ++ + +GG + G + H+ + + + A++ L
Sbjct: 98 VMCQVLTDLIDEEVKSGIKKNRILIGG----FSMGGCMAMHLAYRNHQDVAGVFALSSFL 153
Query: 212 EKAASVYSQRIRQLGEISGMEGTHDEISELICDLQNVAVNSNQSLRRVAVEPSDHFFLPS 271
KA++VY + G + + H EL+ L + A +N L+ + V H F
Sbjct: 154 NKASAVYQALQKSNGVLPELFQCHGTADELV--LHSWAEETNSMLKSLGVTTKFHSFPNV 211
Query: 272 STELHSQE 279
EL E
Sbjct: 212 YHELSKTE 219
>pdb|1MGS|A Chain A, The Solution Structure Of Melanoma Growth Stimulating
Activity
pdb|1MGS|B Chain B, The Solution Structure Of Melanoma Growth Stimulating
Activity
Length = 73
Score = 27.7 bits (60), Expect = 9.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 37 VFVALSGGTKACMHKAFQIIQATCEGQLNVDES 69
V L G KAC++ A I++ E LN D+S
Sbjct: 40 VIATLKNGRKACLNPASPIVKKIIEKMLNSDKS 72
>pdb|1MSG|A Chain A, Solution Structure Of Gro(Slash)melanoma Growth
Stimulatory Activity Determined By 1h Nmr Spectroscopy
pdb|1MSG|B Chain B, Solution Structure Of Gro(Slash)melanoma Growth
Stimulatory Activity Determined By 1h Nmr Spectroscopy
pdb|1MSH|A Chain A, Solution Structure Of Gro(Slash)melanoma Growth
Stimulatory Activity Determined By 1h Nmr Spectroscopy
pdb|1MSH|B Chain B, Solution Structure Of Gro(Slash)melanoma Growth
Stimulatory Activity Determined By 1h Nmr Spectroscopy
Length = 72
Score = 27.7 bits (60), Expect = 9.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 37 VFVALSGGTKACMHKAFQIIQATCEGQLNVDES 69
V L G KAC++ A I++ E LN D+S
Sbjct: 40 VIATLKNGRKACLNPASPIVKKIIEKMLNSDKS 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,573,599
Number of Sequences: 62578
Number of extensions: 436836
Number of successful extensions: 946
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 11
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)