BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018541
         (354 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O31646|MANA1_BACSU Mannose-6-phosphate isomerase ManA OS=Bacillus subtilis (strain
           168) GN=manA PE=3 SV=1
          Length = 315

 Score = 33.5 bits (75), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 253 NQSLRRVAVEPSDHFFLPSSTELHSQESG--SLQDERNSRSVY 293
           ++ LRRV V+P D F++PS T +H+   G  +L+ ++NS + Y
Sbjct: 150 DELLRRVKVKPGDFFYVPSGT-VHAIGKGILALETQQNSDTTY 191


>sp|O05511|MANA2_BACSU Probable mannose-6-phosphate isomerase GmuF OS=Bacillus subtilis
           (strain 168) GN=gmuF PE=1 SV=1
          Length = 315

 Score = 32.7 bits (73), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 253 NQSLRRVAVEPSDHFFLPSSTELHSQESGS--LQDERNSRSVY 293
           N  LRR+ ++P D F++PS T LH+   G+  L+ ++NS + Y
Sbjct: 150 NGLLRRIKIKPGDFFYVPSGT-LHALCKGTLVLEIQQNSDTTY 191


>sp|Q07TH8|GLGA_RHOP5 Glycogen synthase OS=Rhodopseudomonas palustris (strain BisA53)
           GN=glgA PE=3 SV=1
          Length = 489

 Score = 32.0 bits (71), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)

Query: 39  VALSGGTKACMHKAFQIIQATCEGQLNV------DESRLIRSCVAGQIYDS--SPVDFTS 90
           +AL G   A +  AF+ +  +  GQ+ V      D + LI++     +  S   P   T 
Sbjct: 327 LALLGAGDAALEAAFRQVAQSHPGQIGVVVGYDEDLAHLIQAGADALLVPSRFEPCGLTQ 386

Query: 91  DFCARFGLHPTIQKIPGLSKLV-----SWVAKGVTSGLDGLCLTR 130
               R+G  P + ++ GLS  V       +A GV +G+    +TR
Sbjct: 387 LCALRYGAVPVVARVGGLSDTVVDANEMAIAAGVATGVQFSPVTR 431


>sp|Q02286|PHEA_ENTAG P-protein OS=Enterobacter agglomerans GN=pheA PE=4 SV=1
          Length = 387

 Score = 31.6 bits (70), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 190 SPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGEISGMEGTHDEISELICDLQNVA 249
           S  I  + ++ I+Y  +    +EK A++ S ++  LG  +G E    ++ E   +L N  
Sbjct: 217 SQFINRFPHWKIEYTESTAAAMEKVAALNSPKVAALGSEAGGELYQLQVLER--NLANQQ 274

Query: 250 VNSNQ--SLRRVAVEPSDHFFLPSSTEL---HSQESGSLQD 285
            N  +   L R A+E SD   +P+ T L     Q++G+L D
Sbjct: 275 QNHTRFIVLARKAIEVSDQ--VPAKTTLIMATGQQAGALVD 313


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,136,733
Number of Sequences: 539616
Number of extensions: 5480466
Number of successful extensions: 12212
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 12212
Number of HSP's gapped (non-prelim): 6
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)