Your job contains 1 sequence.
>018543
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG
PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN
RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY
PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE
LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018543
(354 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 1455 4.8e-149 1
RGD|1306832 - symbol:Rfc3 "replication factor C (activato... 917 5.0e-92 1
UNIPROTKB|F1P3C0 - symbol:RFC3 "Uncharacterized protein" ... 916 6.3e-92 1
UNIPROTKB|E2R7L0 - symbol:RFC3 "Uncharacterized protein" ... 912 1.7e-91 1
MGI|MGI:1916513 - symbol:Rfc3 "replication factor C (acti... 912 1.7e-91 1
UNIPROTKB|P40938 - symbol:RFC3 "Replication factor C subu... 909 3.5e-91 1
UNIPROTKB|F1RSR4 - symbol:RFC3 "Uncharacterized protein" ... 907 5.7e-91 1
UNIPROTKB|Q2TBV1 - symbol:RFC3 "Replication factor C subu... 905 9.3e-91 1
ZFIN|ZDB-GENE-020809-3 - symbol:rfc3 "replication factor ... 904 1.2e-90 1
DICTYBASE|DDB_G0293702 - symbol:rfc3 "replication factor ... 900 3.1e-90 1
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 832 5.0e-83 1
ASPGD|ASPL0000001589 - symbol:AN6300 species:162425 "Emer... 780 1.6e-77 1
UNIPROTKB|G4NAB7 - symbol:MGG_03202 "Replication factor C... 779 2.1e-77 1
POMBASE|SPBC83.14c - symbol:rfc5 "DNA replication factor ... 725 1.1e-71 1
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 694 2.1e-68 1
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 694 2.1e-68 1
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 657 1.8e-64 1
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 572 1.8e-55 1
GENEDB_PFALCIPARUM|PF11_0117 - symbol:PF11_0117 "replicat... 361 4.1e-33 1
UNIPROTKB|Q8IIQ1 - symbol:PF11_0117 "Replication factor C... 361 4.1e-33 1
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 191 4.3e-29 2
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 189 2.5e-28 2
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 195 5.1e-28 2
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 190 5.9e-28 2
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 189 6.7e-28 2
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 189 8.3e-28 2
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 192 1.3e-27 2
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 189 1.6e-27 2
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 189 2.1e-27 2
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 188 3.9e-27 2
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 177 9.9e-27 2
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 197 1.1e-26 2
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 177 7.5e-26 2
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 180 9.7e-26 2
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 177 1.2e-25 2
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 177 3.3e-25 2
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 177 4.2e-25 2
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 174 5.7e-25 2
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 177 5.8e-25 2
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 174 5.9e-25 2
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 177 8.4e-25 2
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 172 1.7e-24 2
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 177 1.8e-24 2
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 178 1.8e-24 2
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 166 2.5e-23 2
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 166 2.5e-23 2
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 180 4.2e-23 2
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 189 5.8e-23 2
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 178 7.4e-23 2
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 178 7.4e-23 2
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 188 7.5e-23 2
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 182 1.0e-22 2
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 177 2.6e-22 2
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 177 3.8e-22 2
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 177 4.4e-22 2
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 180 4.5e-22 2
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 176 5.8e-22 2
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 163 1.7e-21 2
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 168 3.2e-21 2
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 177 4.5e-21 2
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 168 7.5e-21 2
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 181 3.0e-20 2
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 175 4.1e-20 2
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 176 4.2e-20 2
UNIPROTKB|C9JTT7 - symbol:RFC4 "Replication factor C subu... 177 9.8e-20 2
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 164 6.2e-18 2
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 176 1.1e-16 2
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 205 1.4e-14 1
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 189 1.5e-14 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 199 8.5e-14 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 197 1.4e-13 1
UNIPROTKB|C9JXZ7 - symbol:RFC4 "Replication factor C subu... 177 3.5e-13 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 192 9.6e-13 1
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 191 1.0e-12 1
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 191 1.0e-12 1
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 184 5.5e-12 1
RGD|1593197 - symbol:LOC367042 "similar to Activator 1 37... 181 1.2e-11 1
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 173 2.7e-10 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 169 3.1e-10 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 169 3.1e-10 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 167 4.8e-10 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 167 4.8e-10 1
TIGR_CMR|SO_2013 - symbol:SO_2013 "DNA polymerase III, ga... 172 9.8e-10 1
DICTYBASE|DDB_G0285961 - symbol:rfc1 "replication factor ... 167 5.4e-09 1
TAIR|locus:504956441 - symbol:RFC1 "replication factor C1... 156 5.8e-08 1
UNIPROTKB|Q47XQ9 - symbol:dnaX "DNA polymerase III, gamma... 154 6.6e-08 1
TIGR_CMR|CPS_3744 - symbol:CPS_3744 "DNA polymerase III, ... 154 6.6e-08 1
TIGR_CMR|CBU_0659 - symbol:CBU_0659 "DNA polymerase III, ... 151 8.5e-08 1
UNIPROTKB|Q2GDS0 - symbol:NSE_0492 "Putative DNA polymera... 149 9.0e-08 1
TIGR_CMR|NSE_0492 - symbol:NSE_0492 "putative DNA polymer... 149 9.0e-08 1
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 148 2.1e-07 1
TIGR_CMR|CJE_1293 - symbol:CJE_1293 "DNA polymerase III, ... 145 4.0e-07 1
UNIPROTKB|H7C5P4 - symbol:RFC2 "Replication factor C subu... 131 8.9e-07 1
TIGR_CMR|APH_1348 - symbol:APH_1348 "DNA polymerase III, ... 136 3.4e-06 1
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 136 4.7e-06 1
UNIPROTKB|Q9KT51 - symbol:VC_1054 "DNA polymerase III, su... 137 4.9e-06 1
TIGR_CMR|VC_1054 - symbol:VC_1054 "DNA polymerase III, su... 137 4.9e-06 1
TIGR_CMR|ECH_0014 - symbol:ECH_0014 "DNA polymerase III, ... 135 5.2e-06 1
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 133 9.9e-06 1
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 132 1.3e-05 1
WARNING: Descriptions of 15 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 1455 (517.2 bits), Expect = 4.8e-149, P = 4.8e-149
Identities = 274/354 (77%), Positives = 309/354 (87%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPK+LD+VIVH+DIAQ LKKLV+EQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct: 1 MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61 ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ Y
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240
Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXX 300
PF NQ I MDWEE+V EIA+D+M+EQSPK+LFQVRGK+YE
Sbjct: 241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 300
Query: 301 XXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
D+E+K EVCHWAAYYEH+MR G KAIFH+EAFVAKFMSIYK FL++TFG
Sbjct: 301 LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 354
>RGD|1306832 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=IEA;ISO] [GO:0046683 "response to organophosphorus"
evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 RGD:1306832 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC088281
EMBL:CH474108 IPI:IPI00189913 RefSeq:NP_001009629.1 UniGene:Rn.3711
STRING:Q5M830 Ensembl:ENSRNOT00000001444 GeneID:288414
KEGG:rno:288414 UCSC:RGD:1306832 InParanoid:Q5M830 NextBio:628070
Genevestigator:Q5M830 Uniprot:Q5M830
Length = 356
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 178/348 (51%), Positives = 250/348 (71%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T I S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L IR+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQYP
Sbjct: 180 LAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
F ++Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE
Sbjct: 240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIMKGLLSEL 299
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
>UNIPROTKB|F1P3C0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0046683 "response
to organophosphorus" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AADN02005263 IPI:IPI00593478 PRIDE:F1P3C0
Ensembl:ENSGALT00000027564 Uniprot:F1P3C0
Length = 356
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 178/348 (51%), Positives = 250/348 (71%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP L ++ H++ A L+ LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+++ I A S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQS--ITAPSKK-KIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY A+CRLILCCNS SK+ I+SRC
Sbjct: 120 QLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L++R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E+CRVQQYP
Sbjct: 180 LSVRVPAPSIEDICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
F +Q IP MDWE ++ E A+ I+ +QSP+RL +VRG+LYE
Sbjct: 240 FSADQDIPEMDWEIYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIMKGLLTEL 299
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
D ++K EV AA+YEH+++ G+KAI+HLEAFVAKFM+IYK F+
Sbjct: 300 LNNCDGQLKGEVAQMAAFYEHRLQLGSKAIYHLEAFVAKFMAIYKKFM 347
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 178/348 (51%), Positives = 249/348 (71%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T I S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
F +Q IP DWE ++ E A+ I+ EQ+P+RL +VRG+LYE
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
>MGI|MGI:1916513 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 MGI:MGI:1916513 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756
GO:GO:0046683 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC026795
IPI:IPI00665571 RefSeq:NP_081285.1 UniGene:Mm.12553
ProteinModelPortal:Q8R323 SMR:Q8R323 IntAct:Q8R323 STRING:Q8R323
PhosphoSite:Q8R323 PaxDb:Q8R323 PRIDE:Q8R323
Ensembl:ENSMUST00000038131 GeneID:69263 KEGG:mmu:69263
InParanoid:Q8R323 NextBio:328993 Bgee:Q8R323 CleanEx:MM_RFC3
Genevestigator:Q8R323 GermOnline:ENSMUSG00000033970 Uniprot:Q8R323
Length = 356
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 176/348 (50%), Positives = 250/348 (71%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T I S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +P+ E I VL + +KEGL LPS A RLAEKS R+LR+A+L E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
F ++Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE
Sbjct: 240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 177/348 (50%), Positives = 249/348 (71%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T I S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
F +Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 176/348 (50%), Positives = 249/348 (71%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L Q+ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T I S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +P+ E I VL + KKEGL LPS A +LAEKS R+LR+A+L E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
F +Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE
Sbjct: 240 FTVDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
>UNIPROTKB|Q2TBV1 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0046683
"response to organophosphorus" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 EMBL:BC109606
IPI:IPI00713322 RefSeq:NP_001033636.1 UniGene:Bt.16980
ProteinModelPortal:Q2TBV1 STRING:Q2TBV1 PRIDE:Q2TBV1
Ensembl:ENSBTAT00000014278 GeneID:515602 KEGG:bta:515602 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 InParanoid:Q2TBV1 OMA:TRIMCLL OrthoDB:EOG4T4CVP
NextBio:20871915 Uniprot:Q2TBV1
Length = 356
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 176/348 (50%), Positives = 248/348 (71%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L Q+ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T I S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
F +Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
>ZFIN|ZDB-GENE-020809-3 [details] [associations]
symbol:rfc3 "replication factor C (activator 1) 3"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-020809-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
Pfam:PF08542 CTD:5983 HOVERGEN:HBG040509 HSSP:Q8U4J3 EMBL:BC042327
IPI:IPI00734824 RefSeq:NP_958865.1 UniGene:Dr.13362
ProteinModelPortal:Q8AW06 STRING:Q8AW06 PRIDE:Q8AW06 GeneID:259256
KEGG:dre:259256 InParanoid:Q8AW06 NextBio:20804713
ArrayExpress:Q8AW06 Bgee:Q8AW06 Uniprot:Q8AW06
Length = 356
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 177/348 (50%), Positives = 244/348 (70%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A LK LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+++ I S+ LE+ T++S H+E++PSDAG DR V+QE+IK +A+++
Sbjct: 63 GVEKLRIEHQS--ITTPSKK-KLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + +R FKV++L EVD+L+++AQH+LRRTMEKY A+CRLILCCNS+SKV IRSRC
Sbjct: 120 QIQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ P+ E++ VL + +KEGL LP A ++AEKS R+LR+A+L E CRVQQYP
Sbjct: 180 LAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
F +Q IP DWE ++ E A+ I+ +QSP+RL +VR +LYE
Sbjct: 240 FSPDQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCISPEVIMKGLVTEL 299
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
D +K EV AAYYEH+++ GNKAI+HLEAFVAKFM+IYK F+
Sbjct: 300 LSNCDGHLKAEVAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYKKFM 347
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 166/348 (47%), Positives = 245/348 (70%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW+DKY+P +LD++ H DI+ NLK ++ D PHLL YGP G+GKKT I+A+L++++G
Sbjct: 1 MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P A K+K++++T+K S+NI ++TT+SS H+E++P +AG DR V+Q +IKE+A++
Sbjct: 61 PNALKLKIDHRTFKHPTSSKNI--QITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
PID+ FK+++LNEVDKLS++AQH+LRRTMEKY+ CRLILCC+S++KV + I+SR
Sbjct: 119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
CL IR+ +P++E+I KVL +A E LPS A +A++S +LR A++ E+ + +QY
Sbjct: 179 CLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQY 238
Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXX 300
PF+ + +P +DWE ++ +I D +EQSP RL VRGKLYE
Sbjct: 239 PFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLE 297
Query: 301 XXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGF 348
D +K E+ HWA+YYEH+ + G+K IFHLEAF+AKFMS+YK +
Sbjct: 298 IFKKLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 164/348 (47%), Positives = 235/348 (67%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H+D A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 42 LWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 101
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ + N +E+ T+SS H+E++PSDAG DR VV ++IK++A+
Sbjct: 102 GVERLRSETMTFTTPS---NRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 158
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+I+ NS+S++ AIRSRC
Sbjct: 159 QIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRC 218
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L IR+ +P E +IV +L+ K+EGL LP A R+ +KS R+LRRA+L E +V + P
Sbjct: 219 LGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAP 278
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
F NQ IP +DW+ F+ E AS I+ EQ+P +L ++R +LYE
Sbjct: 279 FTANQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQL 338
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
D IK + +A YEH+M+ G K IFHLEAFVA+FM+IYK FL
Sbjct: 339 VNNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFL 386
>ASPGD|ASPL0000001589 [details] [associations]
symbol:AN6300 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AACD01000107 EMBL:BN001301 KO:K10756 GO:GO:0017111
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224153
OMA:TRIMCLL OrthoDB:EOG4R273P RefSeq:XP_663904.1
ProteinModelPortal:Q5AZI0 STRING:Q5AZI0
EnsemblFungi:CADANIAT00006689 GeneID:2870977 KEGG:ani:AN6300.2
Uniprot:Q5AZI0
Length = 352
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 154/349 (44%), Positives = 222/349 (63%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H +++ L+ L D PHLL YGP G+GKKT +A L++++GP
Sbjct: 3 LLVDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++N+ ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDNRVFQTTS---NRKLEFNIVSSVYHLEITPSDVGTYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +P+EE I +L AK+EG R+A++S R+LRRA+L FE Q
Sbjct: 180 LLVRVAAPSEEDICTILSTSAKREGWNEAPELNKRIAKESGRNLRRALLMFEAIYAQSEK 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
D+ IP DWE + IA +I+ E+SP RL QVR +LY+
Sbjct: 240 VSDDTPIPPPDWEALISVIAEEILAERSPARLLQVRARLYDLLTHCIPATTILKTLTFKL 299
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLV 350
D +K EV W+A+YEH++ +G+K IFHLEAFVAKFM IY+ +L+
Sbjct: 300 IAKIDDTLKPEVIKWSAFYEHRITQGSKVIFHLEAFVAKFMRIYESYLM 348
>UNIPROTKB|G4NAB7 [details] [associations]
symbol:MGG_03202 "Replication factor C subunit 5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 EMBL:CM001234 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_003716781.1 ProteinModelPortal:G4NAB7
EnsemblFungi:MGG_03202T0 GeneID:2676506 KEGG:mgr:MGG_03202
Uniprot:G4NAB7
Length = 352
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 152/349 (43%), Positives = 228/349 (65%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H+++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQGARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +P+E++I VL AKKEG + + R+A++S R+LRRA+L ET Q
Sbjct: 180 LLVRVAAPSEDEICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQNEK 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
+DN IP DWE + +IA +IM+E +P R+ QVR KLY+
Sbjct: 240 VEDNTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTFKL 299
Query: 302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLV 350
D ++K EV W+A+YEH+++ G K IFHLEAFVAKFM I + +L+
Sbjct: 300 VPLIDDDLKVEVIKWSAFYEHRIKMGTKVIFHLEAFVAKFMRILEMYLM 348
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 143/349 (40%), Positives = 222/349 (63%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW+D+YRPKTL + H+ +++ L L + + PHLL YGP G+GKKT ++A+LR+++G
Sbjct: 1 MLWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG+EK+K++ +T+ + + L++ +SS +H+E++PSD G DR ++QE++K++A++
Sbjct: 61 PGSEKLKIDQRTFLTPSSKK---LQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQS 117
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+D + K+ FKV+V+N D+L+R+AQ +LRRTMEKYS + RLIL NS+SK+ E IRSR
Sbjct: 118 AQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
L +R+ +PT E+I+ V+ I +GL+ P +A +R+LR+AIL ET +
Sbjct: 178 TLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSP 237
Query: 241 PFK---DNQA-IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXX 296
K D A +P DW+ F+ ++ ++QEQSP R+ VR LY+
Sbjct: 238 GNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKE 297
Query: 297 XXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345
D ++ + AA YEH+ R GNK+IFHLEAFVA FM +Y
Sbjct: 298 LLSFFLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 151/349 (43%), Positives = 212/349 (60%)
Query: 2 LWVDKYRPKTL---DQVIVHQDIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQ 57
LWVDKYRPK L D V H + A +LK L DC PHLLF GP G+GKKT I LLR+
Sbjct: 3 LWVDKYRPKDLLGKDGVDYHIEQANHLKFL--SADCMPHLLFCGPSGAGKKTRIKCLLRE 60
Query: 58 VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
++G G EK ++ K++ N LE+ T+SS H+E++PSD G DR VVQ+++KEM
Sbjct: 61 LYGVGVEKTQLIMKSF---TSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEM 117
Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
A+ I++ +R FKV+VL E D L+R+AQH LRRTMEKY+ +C+++L C S S++ E +
Sbjct: 118 AQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPL 177
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
+SRC+ I + +PT+E + KVL + ++E LP ++ EKS +LRRAIL E R+
Sbjct: 178 QSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRM 237
Query: 238 Q-QYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXX 296
+ + ++ IP +WE ++ E A I+Q+QS L +VR +LYE
Sbjct: 238 ENESGVAESVVIPVPEWEIYIQETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIFKK 297
Query: 297 XXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345
+I EV AA +EH++ G KAIFHLE FVA FM IY
Sbjct: 298 LLEHLLPKCPPQIAREVVSEAAKFEHRLVLGQKAIFHLEGFVAAFMDIY 346
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 151/349 (43%), Positives = 212/349 (60%)
Query: 2 LWVDKYRPKTL---DQVIVHQDIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQ 57
LWVDKYRPK L D V H + A +LK L DC PHLLF GP G+GKKT I LLR+
Sbjct: 3 LWVDKYRPKDLLGKDGVDYHIEQANHLKFL--SADCMPHLLFCGPSGAGKKTRIKCLLRE 60
Query: 58 VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
++G G EK ++ K++ N LE+ T+SS H+E++PSD G DR VVQ+++KEM
Sbjct: 61 LYGVGVEKTQLIMKSF---TSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEM 117
Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
A+ I++ +R FKV+VL E D L+R+AQH LRRTMEKY+ +C+++L C S S++ E +
Sbjct: 118 AQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPL 177
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
+SRC+ I + +PT+E + KVL + ++E LP ++ EKS +LRRAIL E R+
Sbjct: 178 QSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRM 237
Query: 238 Q-QYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXX 296
+ + ++ IP +WE ++ E A I+Q+QS L +VR +LYE
Sbjct: 238 ENESGVAESVVIPVPEWEIYIQETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIFKK 297
Query: 297 XXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345
+I EV AA +EH++ G KAIFHLE FVA FM IY
Sbjct: 298 LLEHLLPKCPPQIAREVVSEAAKFEHRLVLGQKAIFHLEGFVAAFMDIY 346
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 145/356 (40%), Positives = 211/356 (59%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+TLDQ+ H I +L+ L D PHLL YGP GSGKKT I L ++FGP
Sbjct: 3 LWVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ K + S N LE LSS+NH+E++PSD G DR V+Q+++K++A
Sbjct: 63 QVEKLKIDVKNF---VTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+D ++ K FK++++NE D LSR+AQ +LRRTMEKYS++ RLIL CNS S + I
Sbjct: 120 QVDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPI 179
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-------FATRLAEKSNRSLRRAIL 230
+SR L +RI SP+ + I +L +A+KE L+ + F +++AE SNR+LRR +L
Sbjct: 180 KSRTLLVRIPSPSVDNINHILGHVAEKESLKFSTHNDSEINHFYSKIAETSNRNLRRCLL 239
Query: 231 SFETCRVQQYPF--KDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXX- 287
SFET +Q + + A A+DWE + +A I + Q+ L + R LYE
Sbjct: 240 SFETISMQNETINVRSDVAKIALDWEAIIRNMAISIQKNQNVATLAKTRVVLYELLSHCI 299
Query: 288 -XXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
+ E+ E+ + A+ ++ ++ G+K+IFHLE FVAK M
Sbjct: 300 PARIILKTLLFDLIDIFSNNNELVSELINQASIFDERLSLGSKSIFHLEGFVAKSM 355
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 126/351 (35%), Positives = 205/351 (58%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L+ + ++++ LK L + +D PHLL YGP G+GKKT MALL +FG
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG ++K++ + + + A +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTK-GKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + K G +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
I+SRCL IR +P++ +I +L + E +QL + R+A+ SN +LR ++L E+
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
Query: 235 CRVQ-QYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXX--XXXX 291
+ + K + I DW + ++ I++E+S L + R LY+
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII 299
Query: 292 XXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
+ K + +++ ++ ++ GNKAIFHLE F+AK M
Sbjct: 300 LKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350
>GENEDB_PFALCIPARUM|PF11_0117 [details] [associations]
symbol:PF11_0117 "replication factor C subunit
5, putative" species:5833 "Plasmodium falciparum" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 80/239 (33%), Positives = 140/239 (58%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KY P+++D++ +H+DI + L+KL +D PH++FYG PG GK T I L++++F
Sbjct: 1 MWLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKD 60
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+ + +A ++ + + + S H+EL + G +D+ +VQ +IKE+ +
Sbjct: 61 --EKI-IRRPECITNAENK---ININVVQSNYHLELQCFELGNKDKIIVQSIIKELCSYK 114
Query: 122 PIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ + +++ V + + LS AQ LRRT+E Y + R+IL SK+ E ++S
Sbjct: 115 SSASFFSKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKS 174
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT-----RLAEKSNRSLRRAILSFE 233
RC+ IR+ P+EE+I VL+ I K+E + PS F+T L R+LR+ I++ E
Sbjct: 175 RCICIRVPLPSEEEIYSVLQNICKQENVS-PS-FSTYEYFQTLINTHGRNLRKCIMALE 231
>UNIPROTKB|Q8IIQ1 [details] [associations]
symbol:PF11_0117 "Replication factor C subunit 5, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 80/239 (33%), Positives = 140/239 (58%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KY P+++D++ +H+DI + L+KL +D PH++FYG PG GK T I L++++F
Sbjct: 1 MWLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKD 60
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+ + +A ++ + + + S H+EL + G +D+ +VQ +IKE+ +
Sbjct: 61 --EKI-IRRPECITNAENK---ININVVQSNYHLELQCFELGNKDKIIVQSIIKELCSYK 114
Query: 122 PIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ + +++ V + + LS AQ LRRT+E Y + R+IL SK+ E ++S
Sbjct: 115 SSASFFSKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKS 174
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT-----RLAEKSNRSLRRAILSFE 233
RC+ IR+ P+EE+I VL+ I K+E + PS F+T L R+LR+ I++ E
Sbjct: 175 RCICIRVPLPSEEEIYSVLQNICKQENVS-PS-FSTYEYFQTLINTHGRNLRKCIMALE 231
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 191 (72.3 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
WV+KYRP+TLD +I HQDI ++K ++E PHLLFYGPPG+GK + I+A RQ++
Sbjct: 16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLY 72
Score = 189 (71.6 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
Identities = 45/136 (33%), Positives = 79/136 (58%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D VV+ I A R I K+GFK+++L+E D ++++AQ++LRR +
Sbjct: 82 LELNASDDRGID--VVRGPILSFASTRTIF---KKGFKLVILDEADAMTQDAQNALRRVI 136
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGF 213
EK++ + R L CN SK+ A++SRC R ++ Q++ LE + ++E + + P G
Sbjct: 137 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDGM 196
Query: 214 ATRLAEKSNRSLRRAI 229
+ S +RR++
Sbjct: 197 KA-IVTLSTGDMRRSL 211
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 189 (71.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 46/135 (34%), Positives = 77/135 (57%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D +V+ I A R I K+GFK+++L+E D ++++AQ++LRR +
Sbjct: 87 LELNASDDRGID--IVRGPILSFASTRTIF---KKGFKLVILDEADAMTQDAQNALRRVI 141
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EK++ + R L CN SK+ A++SRC R T E +V LE + ++E + +
Sbjct: 142 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 201
Query: 215 TRLAEKSNRSLRRAI 229
L S+ +RRA+
Sbjct: 202 KALITLSSGDMRRAL 216
Score = 182 (69.1 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 30/57 (52%), Positives = 43/57 (75%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
WV+KYRP+TLD +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 195 (73.7 bits), Expect = 5.1e-28, Sum P(2) = 5.1e-28
Identities = 47/135 (34%), Positives = 77/135 (57%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D +V+ I A R I KRGFK+++L+E D ++++AQ++LRR +
Sbjct: 87 LELNASDDRGID--IVRGPILSFASTRTIF---KRGFKLVILDEADAMTQDAQNALRRVI 141
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EK++ + R L CN SK+ A++SRC R T E +V LE + ++E + +
Sbjct: 142 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGM 201
Query: 215 TRLAEKSNRSLRRAI 229
L S+ +RRA+
Sbjct: 202 KALVTLSSGDMRRAL 216
Score = 174 (66.3 bits), Expect = 5.1e-28, Sum P(2) = 5.1e-28
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
WV+KYRP+TL +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 190 (71.9 bits), Expect = 5.9e-28, Sum P(2) = 5.9e-28
Identities = 47/142 (33%), Positives = 78/142 (54%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D VV+ IK+ A R I +KG FK+++L+E D ++ AQ++LRR +
Sbjct: 80 LELNASDDRGID--VVRNQIKDFASTRQIFSKG---FKLIILDEADAMTNAAQNALRRVI 134
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
E+Y+ + R + N + K+T A+ SRC R +E I + + + E L+L
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 215 TRLAEKSNRSLRRAILSFETCR 236
L E SN +RR + ++C+
Sbjct: 195 KALIELSNGDMRRVLNVLQSCK 216
Score = 180 (68.4 bits), Expect = 5.9e-28, Sum P(2) = 5.9e-28
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V ++ ++K V E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
Query: 63 AEKVKVE 69
+ +E
Sbjct: 75 YSNMVLE 81
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 189 (71.6 bits), Expect = 6.7e-28, Sum P(2) = 6.7e-28
Identities = 46/135 (34%), Positives = 77/135 (57%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D +V+ I A R I K+GFK+++L+E D ++++AQ++LRR +
Sbjct: 102 LELNASDDRGID--IVRGPILSFASTRTIF---KKGFKLVILDEADAMTQDAQNALRRVI 156
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EK++ + R L CN SK+ A++SRC R T E +V LE + ++E + +
Sbjct: 157 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 216
Query: 215 TRLAEKSNRSLRRAI 229
L S+ +RRA+
Sbjct: 217 KALITLSSGDMRRAL 231
Score = 182 (69.1 bits), Expect = 6.7e-28, Sum P(2) = 6.7e-28
Identities = 30/57 (52%), Positives = 43/57 (75%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
WV+KYRP+TLD +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 36 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 92
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 189 (71.6 bits), Expect = 8.3e-28, Sum P(2) = 8.3e-28
Identities = 47/135 (34%), Positives = 76/135 (56%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D +V+ I A R I K+GFK+++L+E D ++++AQ++LRR +
Sbjct: 87 LELNASDDRGID--IVRGPILSFASTRTIF---KKGFKLVILDEADAMTQDAQNALRRVI 141
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EK++ + R L CN SK+ A++SRC R T E +V LE + +E + L
Sbjct: 142 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGM 201
Query: 215 TRLAEKSNRSLRRAI 229
L S+ +RRA+
Sbjct: 202 KALVTLSSGDMRRAL 216
Score = 177 (67.4 bits), Expect = 8.3e-28, Sum P(2) = 8.3e-28
Identities = 29/57 (50%), Positives = 43/57 (75%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 192 (72.6 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 46/135 (34%), Positives = 77/135 (57%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D +V+ I A R I K+GFK+++L+E D ++++AQ++LRR +
Sbjct: 87 LELNASDDRGID--IVRGPILSFASTRTIF---KKGFKLVILDEADAMTQDAQNALRRVI 141
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EK++ + R L CN SK+ A++SRC R T E +V LE + ++E + +
Sbjct: 142 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGM 201
Query: 215 TRLAEKSNRSLRRAI 229
L S+ +RRA+
Sbjct: 202 KALVTLSSGDMRRAL 216
Score = 174 (66.3 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
WV+KYRP+TL +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 189 (71.6 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 47/135 (34%), Positives = 76/135 (56%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D +V+ I A R I K+GFK+++L+E D ++++AQ++LRR +
Sbjct: 87 LELNASDDRGID--IVRGPILSFASTRTIF---KKGFKLVILDEADAMTQDAQNALRRVI 141
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EK++ + R L CN SK+ A++SRC R T E +V LE + +E + L
Sbjct: 142 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGM 201
Query: 215 TRLAEKSNRSLRRAI 229
L S+ +RRA+
Sbjct: 202 KALVTLSSGDMRRAL 216
Score = 177 (67.4 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 29/57 (50%), Positives = 43/57 (75%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 189 (71.6 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 45/135 (33%), Positives = 77/135 (57%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D +++ I A R I K+GFK+++L+E D ++++AQ++LRR +
Sbjct: 88 LELNASDDRGID--IIRGPILSFASTRTIF---KKGFKLVILDEADAMTQDAQNALRRVI 142
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EK++ + R L CN SK+ A++SRC R T E +V LE + ++E + +
Sbjct: 143 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 202
Query: 215 TRLAEKSNRSLRRAI 229
L S+ +RRA+
Sbjct: 203 KALVTLSSGDMRRAL 217
Score = 176 (67.0 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY 78
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 188 (71.2 bits), Expect = 3.9e-27, Sum P(2) = 3.9e-27
Identities = 52/187 (27%), Positives = 94/187 (50%)
Query: 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAK---NRP----IDTKGKRGFKVLVLNEVDK 141
L + +EL+ SD + +V+E +K A+ ++P ++ +K+++L+E D
Sbjct: 87 LMKSRILELNASDE--RGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADS 144
Query: 142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFI 201
++ +AQ +LRRTME YS R L CN +++ + + SRC R + + L FI
Sbjct: 145 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFI 204
Query: 202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC-RVQQYPFKDNQAIPAMDWEEFVFEI 260
+++E ++ G R+ + S LRR I ++ + QY D + I + EE +
Sbjct: 205 SEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY-LGDGKNITSTQVEELAGVV 263
Query: 261 ASDIMQE 267
DI+ E
Sbjct: 264 PHDILIE 270
Score = 176 (67.0 bits), Expect = 3.9e-27, Sum P(2) = 3.9e-27
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 AEKVKV 68
K ++
Sbjct: 87 LMKSRI 92
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 177 (67.4 bits), Expect = 9.9e-27, Sum P(2) = 9.9e-27
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKV 68
+++V
Sbjct: 100 LFRLRV 105
Score = 147 (56.8 bits), Expect = 9.9e-27, Sum P(2) = 9.9e-27
Identities = 40/105 (38%), Positives = 58/105 (55%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK----NRPIDTKGKRGFKVLVLNEVDKLSREAQHS 149
+EL+ SD G Q VV+E +K A+ D K FK+++L+E D ++ AQ +
Sbjct: 106 LELNASDERGIQ---VVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQI 194
LRRTMEK S + R L CN S++ E + SRC R P ++I
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK-PLSDKI 206
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 197 (74.4 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 57/170 (33%), Positives = 89/170 (52%)
Query: 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN-----RPIDT 125
KT I A SR I + +EL+ SD + VV+ IK ++ RP D
Sbjct: 76 KTSTILAASRQI---FGDMFKDRILELNASDE--RGINVVRTKIKNFSQLSASSVRP-DG 129
Query: 126 KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185
K FK+++L+E D ++ AQ +LRRTMEK S S R L CN S++ I SRC R
Sbjct: 130 KPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFR 189
Query: 186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ E++++ L++I + EG+++ + + S LRRAI + ++C
Sbjct: 190 FKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSC 239
Score = 160 (61.4 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
WV+KYRP+ +D V+ ++ L+K V D P++L YGPPG+GK + I+A RQ+FG
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFG 89
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 177 (67.4 bits), Expect = 7.5e-26, Sum P(2) = 7.5e-26
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKV 68
+++V
Sbjct: 100 LFRLRV 105
Score = 176 (67.0 bits), Expect = 7.5e-26, Sum P(2) = 7.5e-26
Identities = 51/141 (36%), Positives = 78/141 (55%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK----NRPIDTKGKRGFKVLVLNEVDKLSREAQHS 149
+EL+ SD G Q VV+E +K A+ D K FK+++L+E D ++ AQ +
Sbjct: 106 LELNASDERGIQ---VVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEE-QIVKVLEFIAKKEGLQ 208
LRRTMEK S + R L CN S++ E + SRC R +++ Q ++L+ IAKKE ++
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLD-IAKKENVK 221
Query: 209 LPSGFATRLAEKSNRSLRRAI 229
+ L + S LR+AI
Sbjct: 222 ISDEGIAYLVKVSEGDLRKAI 242
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 180 (68.4 bits), Expect = 9.7e-26, Sum P(2) = 9.7e-26
Identities = 53/142 (37%), Positives = 76/142 (53%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK-----NRPIDTKGKRGFKVLVLNEVDKLSREAQH 148
+EL+ SD G Q VV+E +K A+ RP D K FK+++L+E D ++ AQ
Sbjct: 101 LELNASDERGIQ---VVREKVKRFAQLTVAGTRP-DGKTCPPFKIIILDEADSMTSAAQA 156
Query: 149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEE-QIVKVLEFIAKKEGL 207
+LRRTMEK S + R L CN S++ E + SRC R + Q ++LE I +KE L
Sbjct: 157 ALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILE-ICRKENL 215
Query: 208 QLPSGFATRLAEKSNRSLRRAI 229
+ + L S LR+AI
Sbjct: 216 KYTTEGVDALVRVSEGDLRKAI 237
Score = 173 (66.0 bits), Expect = 9.7e-26, Sum P(2) = 9.7e-26
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R+++GP
Sbjct: 35 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPD 94
Query: 63 AEKVKV 68
+ +V
Sbjct: 95 LYRQRV 100
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 177 (67.4 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKV 68
+++V
Sbjct: 100 LFRLRV 105
Score = 176 (67.0 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 51/141 (36%), Positives = 78/141 (55%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK----NRPIDTKGKRGFKVLVLNEVDKLSREAQHS 149
+EL+ SD G Q VV+E +K A+ D K FK+++L+E D ++ AQ +
Sbjct: 106 LELNASDERGIQ---VVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEE-QIVKVLEFIAKKEGLQ 208
LRRTMEK S + R L CN S++ E + SRC R +++ Q ++L+ IAKKE ++
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLD-IAKKENVK 221
Query: 209 LPSGFATRLAEKSNRSLRRAI 229
+ L + S LR+AI
Sbjct: 222 ISDEGIAYLVKVSEGDLRKAI 242
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 177 (67.4 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKV 68
+++V
Sbjct: 100 LFRLRV 105
Score = 170 (64.9 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 50/141 (35%), Positives = 78/141 (55%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK----NRPIDTKGKRGFKVLVLNEVDKLSREAQHS 149
+EL+ SD G Q VV+E +K A+ D K FK+++L+E D ++ AQ +
Sbjct: 106 LELNASDERGIQ---VVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEE-QIVKVLEFIAKKEGLQ 208
LRRTMEK S + R L CN S++ E + SRC R +++ Q ++L+ IA KE ++
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLD-IADKEHVK 221
Query: 209 LPSGFATRLAEKSNRSLRRAI 229
+ + L + S LR+AI
Sbjct: 222 ISNEGIAYLVQVSEGDLRKAI 242
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 177 (67.4 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKV 68
+++V
Sbjct: 100 LFRLRV 105
Score = 171 (65.3 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 52/141 (36%), Positives = 75/141 (53%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK----NRPIDTKGKRGFKVLVLNEVDKLSREAQHS 149
+EL+ SD G Q VV+E +K A+ D K FK+++L+E D ++ AQ +
Sbjct: 106 LELNASDERGIQ---VVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIV-KVLEFIAKKEGLQ 208
LRRTMEK S + R L CN S++ E + SRC R P ++I K L IA+KE ++
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK-PLSDKIQQKRLLDIAEKENVK 221
Query: 209 LPSGFATRLAEKSNRSLRRAI 229
+ L S LR+AI
Sbjct: 222 IGDEEIAYLVRISEGDLRKAI 242
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 174 (66.3 bits), Expect = 5.7e-25, Sum P(2) = 5.7e-25
Identities = 48/141 (34%), Positives = 83/141 (58%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTK--GK--RGFKVLVLNEVDKLSREAQHS 149
+EL+ SD G Q V++E +K A+ ++ GK FK+++L+E D ++ AQ +
Sbjct: 104 LELNASDERGIQ---VIREKVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQAA 160
Query: 150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEE-QIVKVLEFIAKKEGLQ 208
LRRTMEK S + R L CN S++ E + SRC R +++ Q ++L+ +++KE ++
Sbjct: 161 LRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLD-VSEKENVK 219
Query: 209 LPSGFATRLAEKSNRSLRRAI 229
+ S + L + S+ LR+AI
Sbjct: 220 ITSEAVSYLVKVSDGDLRKAI 240
Score = 173 (66.0 bits), Expect = 5.7e-25, Sum P(2) = 5.7e-25
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
WV+KYRPK +D+V ++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 38 WVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 96
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 177 (67.4 bits), Expect = 5.8e-25, Sum P(2) = 5.8e-25
Identities = 39/110 (35%), Positives = 64/110 (58%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 36 WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 95
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELS-PS--DAGFQDRY 108
+ ++ +++A R I + + V+LS P+ DA + ++Y
Sbjct: 96 LYRSRI----LELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKY 141
Score = 171 (65.3 bits), Expect = 5.8e-25, Sum P(2) = 5.8e-25
Identities = 38/99 (38%), Positives = 56/99 (56%)
Query: 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPT 190
FK+++L+E D ++++AQ +LRRTME+YS R L CN +++ E + SRC R
Sbjct: 146 FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLD 205
Query: 191 EEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
L IA+ E L L +G +L S+ LRRAI
Sbjct: 206 NSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAI 244
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 174 (66.3 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 48/141 (34%), Positives = 83/141 (58%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTK--GK--RGFKVLVLNEVDKLSREAQHS 149
+EL+ SD G Q V++E +K A+ ++ GK FK+++L+E D ++ AQ +
Sbjct: 104 LELNASDERGIQ---VIREKVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQAA 160
Query: 150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEE-QIVKVLEFIAKKEGLQ 208
LRRTMEK S + R L CN S++ E + SRC R +++ Q ++L+ +++KE ++
Sbjct: 161 LRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLD-VSEKENVK 219
Query: 209 LPSGFATRLAEKSNRSLRRAI 229
+ S + L + S+ LR+AI
Sbjct: 220 ITSEAVSYLVKVSDGDLRKAI 240
Score = 173 (66.0 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
WV+KYRPK +D+V ++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 38 WVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 96
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 177 (67.4 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 39 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 98
Query: 63 AEKVKV 68
+++V
Sbjct: 99 LFRLRV 104
Score = 168 (64.2 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
Identities = 50/141 (35%), Positives = 78/141 (55%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK----NRPIDTKGKRGFKVLVLNEVDKLSREAQHS 149
+EL+ SD G Q VV+E +K A+ D K FK+++L+E D ++ AQ +
Sbjct: 105 LELNASDERGIQ---VVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 161
Query: 150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEE-QIVKVLEFIAKKEGLQ 208
LRRTMEK S + R L CN S++ E + SRC R +++ Q ++L+ IA KE ++
Sbjct: 162 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLD-IADKEHVK 220
Query: 209 LPSGFATRLAEKSNRSLRRAI 229
+ + L + S LR+AI
Sbjct: 221 VSNEGIAYLVKVSEGDLRKAI 241
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 172 (65.6 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V ++ L+K + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKV 68
+++V
Sbjct: 100 LFRLRV 105
Score = 171 (65.3 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 50/141 (35%), Positives = 79/141 (56%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK----NRPIDTKGKRGFKVLVLNEVDKLSREAQHS 149
+EL+ SD G Q VV+E +K A+ D K FK+++L+E D ++ AQ +
Sbjct: 106 LELNASDERGIQ---VVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEE-QIVKVLEFIAKKEGLQ 208
LRRTMEK S + R L CN S++ E + SRC R +++ Q ++L+ IA+KE ++
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLD-IAEKENVK 221
Query: 209 LPSGFATRLAEKSNRSLRRAI 229
+ + L + S LR+AI
Sbjct: 222 IGNEEIAYLVKISEGDLRKAI 242
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 177 (67.4 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKV 68
+++V
Sbjct: 100 LFRLRV 105
Score = 165 (63.1 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 50/143 (34%), Positives = 78/143 (54%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK----NRPIDTKGKR--GFKVLVLNEVDKLSREAQ 147
+EL+ SD G Q VV+E +K A+ + GK FK+++L+E D ++ AQ
Sbjct: 106 LELNASDERGIQ---VVREKVKNFAQLTVSGSRSEISGKPCPPFKIVILDEADSMTSAAQ 162
Query: 148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEE-QIVKVLEFIAKKEG 206
+LRRTMEK S + R L CN S++ E + SRC R +++ Q ++L+ IA KE
Sbjct: 163 AALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLD-IADKEH 221
Query: 207 LQLPSGFATRLAEKSNRSLRRAI 229
+++ L + S LR+AI
Sbjct: 222 VKISDEGIAYLVKVSEGDLRKAI 244
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 178 (67.7 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M WV+KYRP LD +I H++I + + ++ + PHLLFYGPPG+GK + I+A RQ++
Sbjct: 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 61 P 61
P
Sbjct: 71 P 71
Score = 161 (61.7 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 44/139 (31%), Positives = 76/139 (54%)
Query: 95 VELSPSDAGFQDRYV--VQEVIKEMAKNRPI--DTKGKRGFKVLVLNEVDKLSREAQHSL 150
+EL+ SD DR + V+ I A R I DT FK+++L+E D ++ +AQ++L
Sbjct: 79 LELNASD----DRGIGIVRGQILNFASTRTIFCDT-----FKLIILDEADAMTNDAQNAL 129
Query: 151 RRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP 210
RR +EKY+ + R + CN SK+ A++SRC R +++Q++ LE I + E +Q+
Sbjct: 130 RRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQIT 189
Query: 211 SGFATRLAEKSNRSLRRAI 229
L + +R+ +
Sbjct: 190 EDGKRALLTLAKGDMRKVL 208
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 166 (63.5 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 37/104 (35%), Positives = 60/104 (57%)
Query: 132 KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS-PT 190
K+++L+EVD ++REAQ ++RR +E +S + R IL CN S++ + SRC R S P
Sbjct: 120 KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPA 179
Query: 191 EEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
E Q+ + L I EG + ++ E S LRRA+ + ++
Sbjct: 180 EIQVQR-LRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQS 222
Score = 165 (63.1 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
+ W +KYRPKTLD + ++ LK + +D PHLLFYGPPG+GK + +A RQ+F
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLF 73
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 166 (63.5 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 37/104 (35%), Positives = 60/104 (57%)
Query: 132 KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS-PT 190
K+++L+EVD ++REAQ ++RR +E +S + R IL CN S++ + SRC R S P
Sbjct: 120 KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPA 179
Query: 191 EEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
E Q+ + L I EG + ++ E S LRRA+ + ++
Sbjct: 180 EIQVQR-LRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQS 222
Score = 165 (63.1 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
+ W +KYRPKTLD + ++ LK + +D PHLLFYGPPG+GK + +A RQ+F
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLF 73
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 180 (68.4 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 49/149 (32%), Positives = 78/149 (52%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKG------KRGFKVLVLNEVDKLSREAQH 148
+EL+ SD D VV+ IK A R I TK FK+++L+E D ++ AQ+
Sbjct: 91 LELNASDDRGID--VVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNVAQN 148
Query: 149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKV-LEFIAKKEGL 207
SLRR +EK++ +CR + N S K+ A+ SRC R +P + +K L + KE +
Sbjct: 149 SLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRF-TPIDISAIKDRLNTVIIKENV 207
Query: 208 QLPSGFATRLAEKSNRSLRRAILSFETCR 236
+ L + SN +RRA+ ++C+
Sbjct: 208 NISPEAIDALLKLSNGDMRRALNVLQSCK 236
Score = 148 (57.2 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
V+KYRP +L++V Q+I ++K V PHLLFYGP G+GK + I+AL ++++G A
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYG--A 83
Query: 64 EKVKVENKTWKIDAGS-RNIDL 84
K N +++A R ID+
Sbjct: 84 TNYK--NMILELNASDDRGIDV 103
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 189 (71.6 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 47/141 (33%), Positives = 80/141 (56%)
Query: 95 VELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153
+EL+ S D G VV+ IK A+ + KG+ K+++L+E D ++ AQ +LRRT
Sbjct: 133 LELNASNDRGID---VVRNKIKMFAQQKVTLPKGRH--KIIILDEADSMTDGAQQALRRT 187
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213
ME YS + R L CN+S K+ E I+SRC +R + +EQI+ L + +KE L + +
Sbjct: 188 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDG 247
Query: 214 ATRLAEKSNRSLRRAILSFET 234
+ + +R+A+ + ++
Sbjct: 248 LEAIIFTAQGDMRQALNNLQS 268
Score = 137 (53.3 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L++++ +++ L+ E + P+++ GPPG+GK T I+ L R + GP
Sbjct: 68 WVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 127
Query: 63 AEKVKVE 69
+ +E
Sbjct: 128 MKDAVLE 134
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 178 (67.7 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 48/137 (35%), Positives = 76/137 (55%)
Query: 95 VELSPSDAGFQDR--YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
+EL+ SD DR V+++ IK AK GK K+++L+EVD ++ AQ SLRR
Sbjct: 83 LELNASD----DRGINVIRDRIKSFAKEIISLPPGKH--KIIILDEVDSMTTAAQQSLRR 136
Query: 153 TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212
ME YS + R L CN S K+ +A++SRC IR +++Q++K + I E ++
Sbjct: 137 IMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDD 196
Query: 213 FATRLAEKSNRSLRRAI 229
L ++ LR+A+
Sbjct: 197 GLDALTFIADGDLRKAV 213
Score = 146 (56.5 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD+V+ + + LK ++T + P+LL G PG+GK T I+ L ++ G
Sbjct: 17 IWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGN 76
Query: 62 GAEKVKVE 69
A+K +E
Sbjct: 77 QAKKAVLE 84
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 178 (67.7 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 48/137 (35%), Positives = 76/137 (55%)
Query: 95 VELSPSDAGFQDR--YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
+EL+ SD DR V+++ IK AK GK K+++L+EVD ++ AQ SLRR
Sbjct: 83 LELNASD----DRGINVIRDRIKSFAKEIISLPPGKH--KIIILDEVDSMTTAAQQSLRR 136
Query: 153 TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212
ME YS + R L CN S K+ +A++SRC IR +++Q++K + I E ++
Sbjct: 137 IMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDD 196
Query: 213 FATRLAEKSNRSLRRAI 229
L ++ LR+A+
Sbjct: 197 GLDALTFIADGDLRKAV 213
Score = 146 (56.5 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD+V+ + + LK ++T + P+LL G PG+GK T I+ L ++ G
Sbjct: 17 IWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGN 76
Query: 62 GAEKVKVE 69
A+K +E
Sbjct: 77 QAKKAVLE 84
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 188 (71.2 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
Identities = 47/140 (33%), Positives = 79/140 (56%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D VV+ IK A+ + I G+ K+++L+E D ++ AQ +LRRTM
Sbjct: 88 LELNASDERGID--VVRNRIKAFAQKKVILPPGRH--KIIILDEADSMTAGAQQALRRTM 143
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
E YS + R L CN S+K+ E I+SRC +R + T++Q+++ L I K E +
Sbjct: 144 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGL 203
Query: 215 TRLAEKSNRSLRRAILSFET 234
L + +R+A+ + ++
Sbjct: 204 AALIMTAEGDMRQAVNNLQS 223
Score = 134 (52.2 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP LD ++ +++ LK + E + PHL+ G PG GK T I+ L + GP
Sbjct: 23 WVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPA 82
Query: 63 AEKVKVE 69
++ +E
Sbjct: 83 YKEGVLE 89
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 182 (69.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 47/141 (33%), Positives = 78/141 (55%)
Query: 95 VELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153
+EL+ S D G VV+ IK A+ + KG+ K+++L+E D ++ AQ +LRRT
Sbjct: 101 LELNASNDRGID---VVRNKIKMFAQQKVTLPKGRH--KIIILDEADSMTDGAQQALRRT 155
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213
ME YS + R L CN+S K+ E I+SRC +R T+ QI+ L + +KE +Q
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDG 215
Query: 214 ATRLAEKSNRSLRRAILSFET 234
+ + +R+A+ + ++
Sbjct: 216 LEAIIFTAQGDMRQALNNLQS 236
Score = 141 (54.7 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L++++ ++D L+ E + P+++ GPPG+GK T I+ L R + GP
Sbjct: 36 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 95
Query: 63 AEKVKVE 69
+ +E
Sbjct: 96 LKDAVLE 102
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 177 (67.4 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 46/152 (30%), Positives = 81/152 (53%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D VV+ IK A+ + +G+ K+++L+E D ++ AQ +LRRTM
Sbjct: 77 LELNASDERGID--VVRHRIKTFAQTKVTLPEGRH--KIIILDEADSMTDGAQQALRRTM 132
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
E Y+ + R L CN S K+ E I+SRC +R + Q++ ++ +AK E + G
Sbjct: 133 EMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGL 192
Query: 215 TRLAEKSNRSLRRAILSFE-TCRVQQYPFKDN 245
+ + +R+A+ + + T + K+N
Sbjct: 193 EAILFTAQGDMRQALNNLQATVNAYELVNKEN 224
Score = 142 (55.0 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK L ++ +++I + LK + E + P+++ GPPG GK T + AL R++ G
Sbjct: 12 WVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGD- 70
Query: 63 AEKVKVENKTWKIDAGS-RNIDL 84
KV+ +++A R ID+
Sbjct: 71 ----KVKEAVLELNASDERGIDV 89
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 177 (67.4 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 44/112 (39%), Positives = 66/112 (58%)
Query: 95 VELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153
+EL+ S D G VV+ IK A+ + KG+ K+++L+E D ++ AQ +LRRT
Sbjct: 103 LELNASNDRGID---VVRNKIKMFAQQKVTLPKGRH--KIIILDEADSMTDGAQQALRRT 157
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
ME YS + R L CN+S K+ E I+SRC +R T+ QI+ L + +KE
Sbjct: 158 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKE 209
Score = 142 (55.0 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L++++ ++D L+ E + P+++ GPPG+GK T I+ L R + GP
Sbjct: 38 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 97
Query: 63 AEKVKVE 69
+ +E
Sbjct: 98 LKDAMLE 104
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 177 (67.4 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 95 VELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153
+EL+ S D G VV+ IK A+ + KG+ K+++L+E D ++ AQ +LRRT
Sbjct: 98 LELNASNDRGID---VVRNKIKMFAQQKVTLPKGRH--KIIILDEADSMTDGAQQALRRT 152
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
ME YS + R L CN+S K+ E I+SRC +R T+ Q++ L + +KE
Sbjct: 153 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKE 204
Score = 141 (54.7 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L++++ ++D L+ E + P+++ GPPG+GK T I+ L R + GP
Sbjct: 33 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 92
Query: 63 AEKVKVE 69
+ +E
Sbjct: 93 LKDAVLE 99
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 180 (68.4 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 47/141 (33%), Positives = 77/141 (54%)
Query: 95 VELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153
+EL+ S D G VV+ IK A+ + KG+ K+++L+E D ++ AQ +LRRT
Sbjct: 108 LELNASNDRGID---VVRNKIKMFAQQKVTLPKGRH--KIIILDEADSMTDGAQQALRRT 162
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213
ME YS + R L CN+S K+ E I+SRC +R T+ QI+ L I +KE +
Sbjct: 163 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDG 222
Query: 214 ATRLAEKSNRSLRRAILSFET 234
+ + +R+A+ + ++
Sbjct: 223 LEAIIFTAQGDMRQALNNLQS 243
Score = 138 (53.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L +V+ ++D L+ E + P+++ GPPG+GK T I+ L R + GP
Sbjct: 43 WVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPA 102
Query: 63 AEKVKVE 69
+ +E
Sbjct: 103 LKDAVLE 109
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 176 (67.0 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 95 VELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153
+EL+ S D G VV+ IK A+ + KG+ K+++L+E D ++ AQ +LRRT
Sbjct: 98 LELNASNDRGID---VVRNKIKMFAQQKVTLPKGRH--KIIILDEADSMTDGAQQALRRT 152
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
ME YS + R L CN+S K+ E I+SRC +R T+ Q++ L + +KE
Sbjct: 153 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKE 204
Score = 141 (54.7 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L++++ ++D L+ E + P+++ GPPG+GK T I+ L R + GP
Sbjct: 33 WVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 92
Query: 63 AEKVKVE 69
+ +E
Sbjct: 93 LKDAVLE 99
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 163 (62.4 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+L+ V + + L + + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 26 WVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGPN 85
Query: 63 AEKVKV 68
K +V
Sbjct: 86 LYKSRV 91
Score = 153 (58.9 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 33/105 (31%), Positives = 55/105 (52%)
Query: 107 RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILC 166
R + KE +N P +K+++L+E D ++ +AQ +LRRTME Y+ R +L
Sbjct: 114 RLTISNPTKEDLQNYPCPP-----YKIIILDEADSMTNDAQSALRRTMENYAGITRFVLI 168
Query: 167 CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211
CN +++ + I SRC R E L++I ++E L+ S
Sbjct: 169 CNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIGQQENLRFES 213
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 168 (64.2 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 41/112 (36%), Positives = 66/112 (58%)
Query: 95 VELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153
+EL+ S D G VV+ IK A+ + KG+ K+++L+E D ++ AQ +LRRT
Sbjct: 101 LELNASNDRGID---VVRNKIKMFAQQKVTLPKGRH--KIIILDEADSMTDGAQQALRRT 155
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
ME YS + R L CN+S K+ E I+SRC +R ++ Q++ L + ++E
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQE 207
Score = 141 (54.7 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L++++ ++D L+ E + P+++ GPPG+GK T I+ L R + GP
Sbjct: 36 WVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPA 95
Query: 63 AEKVKVE 69
+ +E
Sbjct: 96 LKDAVLE 102
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 177 (67.4 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 46/136 (33%), Positives = 81/136 (59%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D VV+ IK A+ + G+ KV++L+E D ++ AQ +LRRT+
Sbjct: 82 LELNASDDRGID--VVRNKIKMFAQKKVTLPPGRH--KVVILDEADSMTSGAQQALRRTI 137
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIV-KVLEFIAKKEGLQLPSGF 213
E YS S R L CN+S+K+ E I+SRC +R + +++QI+ ++L +A ++ +P G
Sbjct: 138 EIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGL 197
Query: 214 ATRLAEKSNRSLRRAI 229
+ ++ +R+A+
Sbjct: 198 EA-IIFTADGDMRQAL 212
Score = 130 (50.8 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP + ++ ++D L+ + + + P+L+ GPPG+GK T I+AL ++ G
Sbjct: 17 WVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTN 76
Query: 63 AEKVKVE 69
++ +E
Sbjct: 77 YKEAVLE 83
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 168 (64.2 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
Identities = 41/112 (36%), Positives = 66/112 (58%)
Query: 95 VELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153
+EL+ S D G VV+ IK A+ + KG+ K+++L+E D ++ AQ +LRRT
Sbjct: 113 LELNASNDRGID---VVRNKIKMFAQQKVTLPKGRH--KIIILDEADSMTDGAQQALRRT 167
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
ME YS + R L CN+S K+ E I+SRC +R ++ Q++ L + ++E
Sbjct: 168 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQE 219
Score = 141 (54.7 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L++++ ++D L+ E + P+++ GPPG+GK T I+ L R + GP
Sbjct: 48 WVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPA 107
Query: 63 AEKVKVE 69
+ +E
Sbjct: 108 LKDAVLE 114
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 181 (68.8 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 51/151 (33%), Positives = 83/151 (54%)
Query: 85 ELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS 143
EL S A+ V EL+ SD D VV+ IK A+ + GK K+++L+E D ++
Sbjct: 65 ELLGRSYADGVLELNASDDRGID--VVRNQIKHFAQKKLHLPPGKH--KIVILDEADSMT 120
Query: 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK 203
AQ +LRRTME YS S R CN S+K+ E ++SRC +R + ++E ++K L I K
Sbjct: 121 AGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIK 180
Query: 204 KEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
E ++ + + + +R+AI + ++
Sbjct: 181 LEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 211
Score = 116 (45.9 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
WV+KYRP+ L ++ +++ L+++ + + PH++ G PG GK T + L ++ G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 175 (66.7 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 42/113 (37%), Positives = 68/113 (60%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ S+ D VV+ IK A+ + +G+ K+++L+E D ++ AQ +LRRTM
Sbjct: 83 LELNASNERGID--VVRNKIKMFAQQKVTLPRGRH--KIVILDEADSMTEGAQQALRRTM 138
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL 207
E YS++ R L CN+S K+ E I+SRC +R ++ Q++ L +AK E L
Sbjct: 139 EIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKL 191
Score = 123 (48.4 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W++KYRP +++ ++D L T+ + P+++ GPPG GK T I L R + G
Sbjct: 18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDS 77
Query: 63 AEKVKVE 69
++ +E
Sbjct: 78 YKEAVLE 84
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 176 (67.0 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 46/141 (32%), Positives = 83/141 (58%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D VV+ IK+ A+ + G++ K+++L+E D ++ AQ +LRRT+
Sbjct: 77 MELNASDDRGID--VVRNKIKQFAQTKISLPPGRQ--KIIILDEADSMTPGAQQALRRTI 132
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIV-KVLEFIAKKEGLQLPSGF 213
E YS + R CN SSK+ E ++SRC +R N ++E+++ ++LE I K E ++ +
Sbjct: 133 EIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEII-KMEDVKYNTEG 191
Query: 214 ATRLAEKSNRSLRRAILSFET 234
L + +R+AI + ++
Sbjct: 192 LQALIFTAEGDMRQAINNLQS 212
Score = 121 (47.7 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
WV+KYRPK L+ ++ +++ + LK +V + + P+++ G PG GK T I L ++ G
Sbjct: 11 WVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLG 68
>UNIPROTKB|C9JTT7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925397
ProteinModelPortal:C9JTT7 SMR:C9JTT7 STRING:C9JTT7
Ensembl:ENST00000447345 ArrayExpress:C9JTT7 Bgee:C9JTT7
Uniprot:C9JTT7
Length = 167
Score = 177 (67.4 bits), Expect = 9.8e-20, Sum P(2) = 9.8e-20
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKV 68
+++V
Sbjct: 100 LFRLRV 105
Score = 80 (33.2 bits), Expect = 9.8e-20, Sum P(2) = 9.8e-20
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK----NRPIDTKGKRGFKVLVLNEVDKLSREAQHS 149
+EL+ SD G Q VV+E +K A+ D K FK+++L+E D ++ AQ +
Sbjct: 106 LELNASDERGIQ---VVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 150 LRRTM 154
LRRTM
Sbjct: 163 LRRTM 167
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 164 (62.8 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 40/110 (36%), Positives = 62/110 (56%)
Query: 96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME 155
EL+ SD D VV++ IK A + G+ K+++L+EVD ++ AQ +LRR ME
Sbjct: 88 ELNASDDRTLD--VVRDKIKSFAMKKVTLPAGRH--KIIILDEVDSMTSGAQQALRRIME 143
Query: 156 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
YS + R CN S+K+ E I+SRC +R ++ QI+ L + + E
Sbjct: 144 IYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIE 193
Score = 116 (45.9 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 19/67 (28%), Positives = 39/67 (58%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP + ++ +++ L+ + + + P+++ GPPG+GK + I+ L R + G
Sbjct: 22 WVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGAN 81
Query: 63 AEKVKVE 69
++ E
Sbjct: 82 YKEAVYE 88
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 176 (67.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 44/112 (39%), Positives = 66/112 (58%)
Query: 95 VELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153
+EL+ S D G VV+ IK A+ + KG+ K+++L+E D ++ AQ +LRRT
Sbjct: 44 LELNASNDRGID---VVRNKIKMFAQQKVTLPKGRH--KIIILDEADSMTDGAQQALRRT 98
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
ME YS + R L CN+S K+ E I+SRC +R T+ QI+ L + +KE
Sbjct: 99 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKE 150
Score = 85 (35.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69
L+ E + P+++ GPPG+GK T I+ L R + GP + +E
Sbjct: 1 LQVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLE 45
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 205 (77.2 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 47 KKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD 106
KKTL+ L + G+ KT I A SR +L L + +EL+ SD +
Sbjct: 44 KKTLLSNNLPHMLFYGSPGT---GKTSTILALSR--ELFGPQLMKSRVLELNASDE--RG 96
Query: 107 RYVVQEVIKEMAKN---RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRL 163
+++E +K AK +D FK+++L+E D ++++AQ +LRRTME Y+ R
Sbjct: 97 ISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRF 156
Query: 164 ILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR 223
L CN +++ + + SRC R E +VK LEFIA + + + G L E S
Sbjct: 157 CLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGG 216
Query: 224 SLRRAI 229
+R+AI
Sbjct: 217 DMRKAI 222
Score = 181 (68.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+ YRPKTLDQV + Q LKK + + PH+LFYG PG+GK + I+AL R++FGP
Sbjct: 21 WVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQ 80
Query: 63 AEKVKV 68
K +V
Sbjct: 81 LMKSRV 86
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 189 (71.6 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 45/135 (33%), Positives = 77/135 (57%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D +++ I A R I K+GFK+++L+E D ++++AQ++LRR +
Sbjct: 3 LELNASDDRGID--IIRGPILSFASTRTIF---KKGFKLVILDEADAMTQDAQNALRRVI 57
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EK++ + R L CN SK+ A++SRC R T E +V LE + ++E + +
Sbjct: 58 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 117
Query: 215 TRLAEKSNRSLRRAI 229
L S+ +RRA+
Sbjct: 118 KALVTLSSGDMRRAL 132
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 199 (75.1 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 37/90 (41%), Positives = 56/90 (62%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD +I H+DI Q + KL+ PHLLFYGPPG+GK + I A+ R+++G
Sbjct: 26 WVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGDN 85
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSA 92
++ +E D G + ++ T +S+
Sbjct: 86 YSRMVLELNA-SDDRGIDVVREQIKTFASS 114
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 41/136 (30%), Positives = 72/136 (52%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D VV+E IK A + +K+++L+E D ++ AQ +LRR +
Sbjct: 91 LELNASDDRGID--VVREQIKTFASSM-FFFNTTVPYKLIILDEADSMTNIAQTALRRVI 147
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS-PTEEQIVKVLEFIAKKEGLQLPSGF 213
EKY+ + R + CN K+ A++SRC R + PT +++ E I +KE +++ S
Sbjct: 148 EKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEII-EKENVKVDSKA 206
Query: 214 ATRLAEKSNRSLRRAI 229
+ E +R+ +
Sbjct: 207 MNAVLELGCGDMRKCL 222
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 197 (74.4 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 44/150 (29%), Positives = 72/150 (48%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L+ V+ H+DI L+K ++ PH+LFYGPPG+GK + I+A R+++GP
Sbjct: 25 WVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPN 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+E D G + ++ +S + S D + + A R
Sbjct: 85 YRNQLMELNA-SDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRV 143
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
I+ K ++ N ++K+S Q R
Sbjct: 144 IEKYTKNVRFCIICNYINKISPAIQSRCTR 173
Score = 176 (67.0 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 46/154 (29%), Positives = 77/154 (50%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D V+E IK A R I FK+++L+E D ++ AQ++LRR +
Sbjct: 90 MELNASDDRGID--AVREQIKNFASTRQIFAST---FKMIILDEADAMTLAAQNALRRVI 144
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EKY+ + R + CN +K++ AI+SRC R ++I K ++ + + E +
Sbjct: 145 EKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAK 204
Query: 215 TRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAI 248
+ S +R+A+ + C Y D AI
Sbjct: 205 MAVLRLSKGDMRKALNILQACHAA-YDHIDVSAI 237
>UNIPROTKB|C9JXZ7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC112907
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00795756
ProteinModelPortal:C9JXZ7 SMR:C9JXZ7 STRING:C9JXZ7
Ensembl:ENST00000427785 HOGENOM:HOG000185875 ArrayExpress:C9JXZ7
Bgee:C9JXZ7 Uniprot:C9JXZ7
Length = 123
Score = 177 (67.4 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKV 68
+++V
Sbjct: 100 LFRLRV 105
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 192 (72.6 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 61/196 (31%), Positives = 98/196 (50%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPI-----DTKGKRG---FKVLVLNEVDKLSREA 146
+EL+ SD D VV+E IK A + I GK FK+++L+E D ++ A
Sbjct: 113 LELNASDDRGID--VVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEADAMTSTA 170
Query: 147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVL-EFIAKKE 205
Q +LRR MEKY+A+ R + N + K++ A+ SRC R SP +EQ ++VL + + +KE
Sbjct: 171 QMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRF-SPLKEQDIRVLIDQVIEKE 229
Query: 206 GLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ--YPFKD---NQAIPAMDWEEFVFEI 260
+++ L S +RRA+ + C P K+ +QA+P + E E
Sbjct: 230 DVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAPQDQAVP--EPETITNET 287
Query: 261 ASDIMQEQSPKRLFQV 276
D + P + Q+
Sbjct: 288 IYDCIAAPHPADIQQI 303
Score = 187 (70.9 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 38/102 (37%), Positives = 56/102 (54%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V H+DI + + V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 47 WVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYGSK 106
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-ELSPSDAG 103
+ V D G + ++ T +S + ++PS G
Sbjct: 107 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATG 148
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 191 (72.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP LD+++ H+ I + L K + + PHLLFYGPPG+GK T ++A RQ++ P
Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSP- 89
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTL 89
K+ + +++A R ID+ T+
Sbjct: 90 ---TKMASMVLELNASDERGIDVVRNTI 114
Score = 181 (68.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 62/222 (27%), Positives = 111/222 (50%)
Query: 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID---TKG 127
KT + A +R + T ++S +EL+ SD D VV+ I A+ + + T
Sbjct: 75 KTTTVLAAARQM-YSPTKMASMV-LELNASDERGID--VVRNTIVNFAQTKGLQAFSTSS 130
Query: 128 KRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184
G FK+++L+E D ++++AQ++LRR +EKY+ + R + CN + + AI+SRC
Sbjct: 131 NTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRF 190
Query: 185 RINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETCRVQQYPFK 243
R ++ IV LE+I + E L++ P G L S +R I + ++ +
Sbjct: 191 RFAPLDQKLIVPRLEYIVETEQLKMTPDG-KDALLIVSKGDMRTVINTLQSTAMSFDTVS 249
Query: 244 DN---QAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYE 282
+N Q I +E E+ ++ + S K + ++ KL+E
Sbjct: 250 ENTVYQCIGQPTPKEMK-EVVKTLLNDPSKKCMNTIQTKLFE 290
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 191 (72.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 50/142 (35%), Positives = 79/142 (55%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++LD V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++GP
Sbjct: 41 WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPK 100
Query: 63 AEKVKVE-NKTWK--IDAGSRNI-DLELT---TL--SSANHVELSPSDAGFQD-RYVVQE 112
+ +E N + ID + I D T +L SS V L +DA +D ++ ++
Sbjct: 101 YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRR 160
Query: 113 VIKEMAKNRPIDTKGKRGFKVL 134
VI++ K+ G K++
Sbjct: 161 VIEKYTKSTRFALIGNHVNKII 182
Score = 155 (59.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 41/135 (30%), Positives = 72/135 (53%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+EL+ SD D VV++ I++ A + GK K+++L+E D ++++AQ +LRR +
Sbjct: 106 LELNASDDRGID--VVRQQIQDFASTQSFSL-GKSSVKLVLLDEADAMTKDAQFALRRVI 162
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EKY+ S R L N +K+ A++SRC R + + L+ + + E L +
Sbjct: 163 EKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGL 222
Query: 215 TRLAEKSNRSLRRAI 229
L SN +R+A+
Sbjct: 223 AALVRLSNGDMRKAL 237
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 184 (69.8 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 44/148 (29%), Positives = 72/148 (48%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV KYRPKT+D V +D+ LKK + + PHLLFYGPPG+GK + I+A+ ++GP
Sbjct: 12 WVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPE 71
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLS--SANHVELSPSDAGFQDRYVVQEVIKEM--- 117
K +V + G + ++ + + N S+ G + ++ + M
Sbjct: 72 LMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTD 131
Query: 118 ---AKNRPIDTKGKRGFKVLVLNEVDKL 142
A R I+T K L+ N + ++
Sbjct: 132 AQAALRRTIETTSKTTRFCLLCNYISRI 159
Score = 162 (62.1 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 44/141 (31%), Positives = 74/141 (52%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAK---NRPIDTKGKRG--FKVLVLNEVDKLSREAQH 148
+EL+ SD G + VV+ IK A N+ G FK+++L+E D ++ +AQ
Sbjct: 78 LELNASDERGIE---VVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTDAQA 134
Query: 149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQ 208
+LRRT+E S + R L CN S++ + + SRC R ++ L+FI+++EG++
Sbjct: 135 ALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIK 194
Query: 209 LPSGFATRLAEKSNRSLRRAI 229
+ SN +R+AI
Sbjct: 195 CEESVYQAIQVVSNGDMRKAI 215
>RGD|1593197 [details] [associations]
symbol:LOC367042 "similar to Activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
kDa subunit) (RFC37)" species:10116 "Rattus norvegicus" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1593197
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000074917
OrthoDB:EOG4Q58PN IPI:IPI00780490 Ensembl:ENSRNOT00000060753
Uniprot:D4ADU1
Length = 346
Score = 181 (68.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 37/100 (37%), Positives = 59/100 (59%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPA 99
Query: 63 AEKVKVENKTWKIDAGSRNID--LELTTLSSANHVELSPS 100
+++V + G + + +LT S + + PS
Sbjct: 100 LFRLRVLELNASDERGIQKVKNFAQLTVSGSRSDGKPCPS 139
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 45/137 (32%), Positives = 68/137 (49%)
Query: 95 VELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153
+EL+ SD G Q V+ + D K FK ++L+E D ++ A+ +LR+T
Sbjct: 106 LELNASDERGIQK---VKNFAQLTVSGSRSDGKPCPSFKTVILDEADSMTSAAR-ALRQT 161
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIV-KVLEFIAKKEGLQLPSG 212
MEK S + R L CN S++ E + SR +P ++I K L IA+KE ++L
Sbjct: 162 MEKESKTTRFCLFCNYVSRIIEPLTSRRSKFCF-TPLSDKIQQKRLLGIAEKENVKLGDD 220
Query: 213 FATRLAEKSNRSLRRAI 229
T S LR+AI
Sbjct: 221 LVTI----SEGDLRKAI 233
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 173 (66.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 72/275 (26%), Positives = 127/275 (46%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RPKT +++ + I + LK V H LF GP G+GK T L + V E
Sbjct: 8 KWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAV---NCE 64
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
VE + + I + +L + ++ + S+ G + ++E ++E K P
Sbjct: 65 H-PVEGEP--CNQCPSCIGINNQSLLNVFEIDAA-SNRGIDE---IRE-LRESIKLVP-- 114
Query: 125 TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184
+GK +KV +++EV L+ EA ++L +T+E+ IL +KV I SRC
Sbjct: 115 AQGK--YKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRF 172
Query: 185 RINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV--QQYPF 242
+ + I + L+ IA+KE LQ + +AE S LR A+ + V +
Sbjct: 173 DFKRISTKTIWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITV 232
Query: 243 KDN-QAIPAMDWEEFVFEIASDIMQEQSPKRLFQV 276
+D + + + W + + E+ S I + K + ++
Sbjct: 233 EDTLKVLGFVSWRK-ILELISAIRENNQLKIINEI 266
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 169 (64.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 47/140 (33%), Positives = 79/140 (56%)
Query: 95 VELSPSDAGFQDR--YVVQEVIKEMAKNRP-IDTKGKRGFKVLVLNEVDKLSREAQHSLR 151
+EL+ SD DR V+++ IK A+++ T K K+++L+E D ++ AQ+++R
Sbjct: 80 LELNASD----DRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMR 135
Query: 152 RTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVK--VLEFIAKKEGLQL 209
R ME Y+ + R L CN +K+T AI+SRC R +P +++ +K L+ IAK E + L
Sbjct: 136 RIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRF-APLKKEYMKNKALD-IAKSENVNL 193
Query: 210 PSGFATRLAEKSNRSLRRAI 229
G L + +RR +
Sbjct: 194 TEGGIDSLIRVGHGDMRRIL 213
Score = 166 (63.5 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L+ +I H+ + +K+ V + + PHLL +GPPG+GK + I+A+ ++++G
Sbjct: 15 WVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDK 74
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLS-SANH 94
+E D G I ++ T + S NH
Sbjct: 75 RSSFVLELNA-SDDRGINVIRDQIKTFAESKNH 106
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 169 (64.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 47/140 (33%), Positives = 79/140 (56%)
Query: 95 VELSPSDAGFQDR--YVVQEVIKEMAKNRP-IDTKGKRGFKVLVLNEVDKLSREAQHSLR 151
+EL+ SD DR V+++ IK A+++ T K K+++L+E D ++ AQ+++R
Sbjct: 80 LELNASD----DRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMR 135
Query: 152 RTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVK--VLEFIAKKEGLQL 209
R ME Y+ + R L CN +K+T AI+SRC R +P +++ +K L+ IAK E + L
Sbjct: 136 RIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRF-APLKKEYMKNKALD-IAKSENVNL 193
Query: 210 PSGFATRLAEKSNRSLRRAI 229
G L + +RR +
Sbjct: 194 TEGGIDSLIRVGHGDMRRIL 213
Score = 166 (63.5 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L+ +I H+ + +K+ V + + PHLL +GPPG+GK + I+A+ ++++G
Sbjct: 15 WVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDK 74
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLS-SANH 94
+E D G I ++ T + S NH
Sbjct: 75 RSSFVLELNA-SDDRGINVIRDQIKTFAESKNH 106
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 167 (63.8 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 3 WVDKYRPKTLDQVIVHQDIA-QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
WV+KYRPK LD IVHQ+ A LK++V ++ PHL+F+GPPG+GK + I AL ++FG
Sbjct: 6 WVEKYRPKRLDD-IVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG- 63
Query: 62 GAEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELS 98
K + + +++A R I++ + + + +S
Sbjct: 64 ---KENISERVLELNASDDRGINVVREKIKAYTRISIS 98
Score = 159 (61.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 51/152 (33%), Positives = 82/152 (53%)
Query: 95 VELSPSDAGFQDR--YVVQEVIK-----EMAKNRPIDTKGKR---GFKVLVLNEVDKLSR 144
+EL+ SD DR VV+E IK ++KN+ I ++ K +K++VL+E D ++
Sbjct: 72 LELNASD----DRGINVVREKIKAYTRISISKNK-IHSETKEVLPSWKLVVLDEADMMTE 126
Query: 145 EAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS-PTEEQIVKVLEFIAK 203
+AQ +LRR +E YS R IL CN K+++ I SRC R S P + K+L +I +
Sbjct: 127 DAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLL-YICQ 185
Query: 204 KEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
E + + ++ E + LRRA+ + C
Sbjct: 186 NENIDIVDDALEKIIETTEGDLRRAVSILQLC 217
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 167 (63.8 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 3 WVDKYRPKTLDQVIVHQDIA-QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
WV+KYRPK LD IVHQ+ A LK++V ++ PHL+F+GPPG+GK + I AL ++FG
Sbjct: 6 WVEKYRPKRLDD-IVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG- 63
Query: 62 GAEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELS 98
K + + +++A R I++ + + + +S
Sbjct: 64 ---KENISERVLELNASDDRGINVVREKIKAYTRISIS 98
Score = 159 (61.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 51/152 (33%), Positives = 82/152 (53%)
Query: 95 VELSPSDAGFQDR--YVVQEVIK-----EMAKNRPIDTKGKR---GFKVLVLNEVDKLSR 144
+EL+ SD DR VV+E IK ++KN+ I ++ K +K++VL+E D ++
Sbjct: 72 LELNASD----DRGINVVREKIKAYTRISISKNK-IHSETKEVLPSWKLVVLDEADMMTE 126
Query: 145 EAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS-PTEEQIVKVLEFIAK 203
+AQ +LRR +E YS R IL CN K+++ I SRC R S P + K+L +I +
Sbjct: 127 DAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLL-YICQ 185
Query: 204 KEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
E + + ++ E + LRRA+ + C
Sbjct: 186 NENIDIVDDALEKIIETTEGDLRRAVSILQLC 217
>TIGR_CMR|SO_2013 [details] [associations]
symbol:SO_2013 "DNA polymerase III, gamma and tau subunits"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_717619.1
ProteinModelPortal:Q8EFG0 SMR:Q8EFG0 GeneID:1169765
KEGG:son:SO_2013 PATRIC:23523647 OMA:PKSGLEM ProtClustDB:PRK14949
Uniprot:Q8EFG0
Length = 1002
Score = 172 (65.6 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 58/225 (25%), Positives = 103/225 (45%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RP T +Q++ + L +T+Q H LF G G GK +L ++F G
Sbjct: 9 KWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLA-----RLFAKGL- 62
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
N + A + ++ V+L DA + + + + + RP
Sbjct: 63 -----NCETGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP-- 115
Query: 125 TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184
T+G+ FKV +++EV LSR + ++L +T+E+ + +L K+ + SRCL
Sbjct: 116 TRGR--FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQF 173
Query: 185 RINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ S T+++I L+ I +E L LA+ +N S+R A+
Sbjct: 174 NLKSLTQQEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDAL 218
>DICTYBASE|DDB_G0285961 [details] [associations]
symbol:rfc1 "replication factor C subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 dictyBase:DDB_G0285961
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0006298 EMBL:AAFI02000082
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 HSSP:P38630
GO:GO:0003689 eggNOG:COG0272 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 RefSeq:XP_638011.1 ProteinModelPortal:Q54MH9
STRING:Q54MH9 EnsemblProtists:DDB0232230 GeneID:8625362
KEGG:ddi:DDB_G0285961 KO:K10754 OMA:IIELSTW Uniprot:Q54MH9
Length = 1401
Score = 167 (63.8 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 64/278 (23%), Positives = 126/278 (45%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LWV+KYRPK ++ ++ + I Q K + + + P + KK ++ + G
Sbjct: 849 ILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNST-----APRDASKKNAVL-----LSG 898
Query: 61 P-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
P G K K G I+L + S + ++ S G D + + +
Sbjct: 899 PPGIGKTSAALLICK-QKGFEAIELNASDARSKSEIKRLLS--GVSDNQNITKFFGTTNQ 955
Query: 120 NRPIDTKGKRGFKV-LVLNEVDKLSREAQHS-LRRTMEKYSASCRLILC-CNS--SSKVT 174
+ D + + K ++L+E+D S + + + S +C CN SSKVT
Sbjct: 956 DTGKDVQANKKIKTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCNDYYSSKVT 1015
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
++R+ C+++++ PT Q+ L IAK EG+++ S ++ S+ +R++I + +
Sbjct: 1016 -SLRNHCMDLKLRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQSINTLQM 1074
Query: 235 CRVQQYPFK-DN--QAIPAMDWEEFVFEIASDIMQEQS 269
+ + DN Q++ D++ F A I++E +
Sbjct: 1075 MSRSKRDYNNDNVTQSLQEKDFDISPFTAAELILREDN 1112
>TAIR|locus:504956441 [details] [associations]
symbol:RFC1 "replication factor C1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0031935
"regulation of chromatin silencing" evidence=IMP] [GO:0051570
"regulation of histone H3-K9 methylation" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0007126
"meiosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR010372 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF06144 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0009737 GO:GO:0007126 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006260 GO:GO:0006974 GO:GO:0051570
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
GO:GO:0003887 EMBL:AL589883 HSSP:P26996 GO:GO:0009360
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 OMA:KLRMDER
GO:GO:0031935 EMBL:BT014965 IPI:IPI00543426 RefSeq:NP_680188.1
UniGene:At.45635 ProteinModelPortal:Q9C587 SMR:Q9C587 STRING:Q9C587
PaxDb:Q9C587 PRIDE:Q9C587 EnsemblPlants:AT5G22010.1 GeneID:832261
KEGG:ath:AT5G22010 TAIR:At5g22010 HOGENOM:HOG000085054
InParanoid:Q9C587 PhylomeDB:Q9C587 ProtClustDB:CLSN2690182
Genevestigator:Q9C587 Uniprot:Q9C587
Length = 956
Score = 156 (60.0 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 58/235 (24%), Positives = 106/235 (45%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLF--YGPPGSGKKTLIMALLRQVFG 60
W +KYRPK ++++ +Q + L ++ H F G G GKK + V
Sbjct: 342 WTEKYRPKVPNEIVGNQSLVTQLHNWLSHW---HDQFGGTGSKGKGKKLNDAGSKKAVLL 398
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA----GFQDRYVVQEVIKE 116
G + KT S+ + + +++++ + S+ G + V+E++
Sbjct: 399 SGTPGI---GKTTSAKLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKELVNN 455
Query: 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILC-CNSS-SKVT 174
A D + K VL+++EVD +S + + + S I+C CN S+
Sbjct: 456 EAMAANFD-RSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKL 514
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+++ + CL + PT++Q+ K L IAK EGL++ LAE+ N +R A+
Sbjct: 515 KSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAV 569
>UNIPROTKB|Q47XQ9 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 154 (59.3 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 59/226 (26%), Positives = 102/226 (45%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RPK Q++ + + L ++++ H LF G G GK T+ + + E
Sbjct: 9 KWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSL---NCE 65
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
+ K DA ID++ V+L DA + + V + +E+ N +
Sbjct: 66 LGITDKPCGKCDAC---IDID-----QGRFVDLLEIDAASKTK--VDDT-REILDN--VQ 112
Query: 125 TKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
RG FKV +++EV LSR + ++L +T+E+ + IL K+ + SRCL
Sbjct: 113 YAPSRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQ 172
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ + T +QI L I E + G T LA+ + S+R ++
Sbjct: 173 FHLKALTVKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSL 218
>TIGR_CMR|CPS_3744 [details] [associations]
symbol:CPS_3744 "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 154 (59.3 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 59/226 (26%), Positives = 102/226 (45%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RPK Q++ + + L ++++ H LF G G GK T+ + + E
Sbjct: 9 KWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSL---NCE 65
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
+ K DA ID++ V+L DA + + V + +E+ N +
Sbjct: 66 LGITDKPCGKCDAC---IDID-----QGRFVDLLEIDAASKTK--VDDT-REILDN--VQ 112
Query: 125 TKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
RG FKV +++EV LSR + ++L +T+E+ + IL K+ + SRCL
Sbjct: 113 YAPSRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQ 172
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ + T +QI L I E + G T LA+ + S+R ++
Sbjct: 173 FHLKALTVKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSL 218
>TIGR_CMR|CBU_0659 [details] [associations]
symbol:CBU_0659 "DNA polymerase III, gamma and tau
subunits" species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_819689.1
ProteinModelPortal:Q83DN8 SMR:Q83DN8 GeneID:1208544
KEGG:cbu:CBU_0659 PATRIC:17929995 OMA:CETKLLA ProtClustDB:PRK14958
BioCyc:CBUR227377:GJ7S-653-MONOMER Uniprot:Q83DN8
Length = 509
Score = 151 (58.2 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 60/226 (26%), Positives = 100/226 (44%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RP+ +VI + + L + +Q H LF G G GK T+ L + + E
Sbjct: 9 KWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL---NCE 65
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI- 123
K N + R ID +L DA R V++ +E+ N P
Sbjct: 66 KGVSANPCNDCE-NCREID-------EGRFPDLFEVDAA--SRTKVEDT-RELLDNIPYA 114
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
TKG+ FKV +++EV LS + ++L +T+E+ + + IL K+ + SRCL
Sbjct: 115 PTKGR--FKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQ 172
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ QI + + K+E ++ + LA +N S+R A+
Sbjct: 173 FHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDAL 218
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 149 (57.5 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 56/231 (24%), Positives = 111/231 (48%)
Query: 5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGA 63
+KYRP+ LD+++ + + L + + +L GP G+GK T A+ +
Sbjct: 8 NKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLL---- 63
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRP 122
N+T + + + + + S + +E+ + S+ G +D V+ +I E A +P
Sbjct: 64 ----CLNRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVED---VRMLI-EGALYKP 115
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K +K +++EV LS+ A +L + +E+ + L K+ I SRC
Sbjct: 116 LLSK----YKSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQ 171
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+ R++ + I + L +A+KE +++ +AEK++ SLR A+ E
Sbjct: 172 HYRLSRLSRVVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLE 222
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 149 (57.5 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 56/231 (24%), Positives = 111/231 (48%)
Query: 5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGA 63
+KYRP+ LD+++ + + L + + +L GP G+GK T A+ +
Sbjct: 8 NKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLL---- 63
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRP 122
N+T + + + + + S + +E+ + S+ G +D V+ +I E A +P
Sbjct: 64 ----CLNRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVED---VRMLI-EGALYKP 115
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K +K +++EV LS+ A +L + +E+ + L K+ I SRC
Sbjct: 116 LLSK----YKSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQ 171
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+ R++ + I + L +A+KE +++ +AEK++ SLR A+ E
Sbjct: 172 HYRLSRLSRVVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLE 222
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 148 (57.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 63/267 (23%), Positives = 117/267 (43%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RP+TL ++ + +A LK ++ + LF GP G+GK T +L +
Sbjct: 9 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGK-TSTGRILAKAVNCTTN 67
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRPI 123
+ K E + + L +T SS + +E+ + S+ G D ++E +KE + P
Sbjct: 68 QGKGE------PCNTCPMCLSITEGSSMDVIEIDAASNTGVDD---IRE-LKEKVQYAP- 116
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
+KV +++EV LS A ++L +T+E+ IL KV I SRC
Sbjct: 117 ---ALANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQR 173
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR---RAILSFETCRVQQY 240
+ + + + LE I++ EG+ + +A + S R + T +
Sbjct: 174 FDFHRVSLSDMSRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTEI 233
Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQE 267
QA + +E + +A +I+++
Sbjct: 234 SLPQVQAALGISGDERIKTLAENILKK 260
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 145 (56.1 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 56/223 (25%), Positives = 101/223 (45%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
KYRPKT D++I + ++ +LK + H LF G GSGK + ++F +
Sbjct: 8 KYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSA-----RIF---SR 59
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRPI 123
+ E G+ L + +E+ + S+ G +D +Q +I E K P
Sbjct: 60 ALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED---IQALI-EQTKYTPS 115
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
+ FK+ +++EV L+ +A ++L +T+E+ + + IL K+ + SR +
Sbjct: 116 MAR----FKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQH 171
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226
R + +I+ L+ I KE ++ +A N SLR
Sbjct: 172 FRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLR 214
>UNIPROTKB|H7C5P4 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF48019
EMBL:AC005081 Pfam:PF08542 HGNC:HGNC:9970 ChiTaRS:RFC2
ProteinModelPortal:H7C5P4 Ensembl:ENST00000497430 Uniprot:H7C5P4
Length = 198
Score = 131 (51.2 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 146 AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
AQ +LRRTME YS + R L CN+S K+ E I+SRC +R T+ QI+ L + +KE
Sbjct: 6 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKE 65
>TIGR_CMR|APH_1348 [details] [associations]
symbol:APH_1348 "DNA polymerase III, subunits gamma and
tau" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:TCARIVS ProtClustDB:PRK14964
RefSeq:YP_505851.1 ProteinModelPortal:Q2GIF0 STRING:Q2GIF0
GeneID:3930792 KEGG:aph:APH_1348 PATRIC:20951496
BioCyc:APHA212042:GHPM-1348-MONOMER Uniprot:Q2GIF0
Length = 456
Score = 136 (52.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 56/231 (24%), Positives = 99/231 (42%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKK---LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
KYRP D +V QD+ + + V + P LL G G GK T +
Sbjct: 6 KYRPSNFDD-LVGQDVLVRILRNSFSVGNLNTP-LLMVGASGVGKTTCARIV-------- 55
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ + EN G+ T++ ++++ ++ DA VI E + P
Sbjct: 56 SLCLNCENGPTSSPCGTC---ATCTSIKNSHNPDVVEMDAASNTSVDDIRVILESSNYLP 112
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ ++ FKV +++EV LS A ++L +T+E + + I+ KV + SRCL
Sbjct: 113 VSSR----FKVYIIDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCL 168
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+ + +Q+ L I+ KE + +AE S+ S+R ++ E
Sbjct: 169 RLDLGKLPIKQLYDHLVKISAKENIAHDESSLMLIAENSSGSVRNSLFLLE 219
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 136 (52.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 54/224 (24%), Positives = 98/224 (43%)
Query: 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAEK 65
+RP+ + V+ + I + L+ + ++ H LF GP G+GK + + V E
Sbjct: 10 FRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV---NCEH 66
Query: 66 VKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDT 125
V+ + A + I T S ++ +E+ + D +++ I++ K P
Sbjct: 67 APVDEPCNEC-AACKGI----TNGSISDVIEIDAASNNGVDE--IRD-IRDKVKFAPSAV 118
Query: 126 KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185
+KV +++EV LS A ++L +T+E+ C IL K+ I SRC
Sbjct: 119 T----YKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFD 174
Query: 186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
T + IV + I E LQ+ G +A ++ +R A+
Sbjct: 175 FKRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDAL 218
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 57/226 (25%), Positives = 97/226 (42%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RP +V+ + L+ + + H LF G G GK T+ ++F G
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTI-----GRLFAKG-- 61
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
+ E G E+ V+L DA R V++ +E+ N +
Sbjct: 62 -LNCETGITATPCGQCATCQEI---DQGRFVDLLEIDAA--SRTKVEDT-RELLDN--VQ 112
Query: 125 TKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
K RG FKV +++EV LSR + ++L +T+E+ + +L K+ I SRCL
Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ + E I + L+ + E + S LA ++ S+R A+
Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDAL 218
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 57/226 (25%), Positives = 97/226 (42%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RP +V+ + L+ + + H LF G G GK T+ ++F G
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTI-----GRLFAKG-- 61
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
+ E G E+ V+L DA R V++ +E+ N +
Sbjct: 62 -LNCETGITATPCGQCATCQEI---DQGRFVDLLEIDAA--SRTKVEDT-RELLDN--VQ 112
Query: 125 TKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
K RG FKV +++EV LSR + ++L +T+E+ + +L K+ I SRCL
Sbjct: 113 YKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQ 172
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ + E I + L+ + E + S LA ++ S+R A+
Sbjct: 173 FHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDAL 218
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 135 (52.6 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 38/150 (25%), Positives = 71/150 (47%)
Query: 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQ 147
++ + NH ++ DA +VI E ++ PI +K FKV +++EV LS A
Sbjct: 91 SIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSK----FKVYIIDEVHMLSNSAF 146
Query: 148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL 207
++L + +E+ + + IL K+ I SRC + +++V L+ +AKKE +
Sbjct: 147 NALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTDKLVDHLKVVAKKENV 206
Query: 208 QLPSGFATRLAEKSNRSLRRAILSFETCRV 237
+A ++ S+R A+ E +
Sbjct: 207 SFDEESIKLIAYNADGSIRNALSLLEQAAI 236
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 133 (51.9 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 51/225 (22%), Positives = 103/225 (45%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
KYR + Q++ + +A+ LK+ V ++ H LF GP G+GK ++ ++F A+
Sbjct: 8 KYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVA-----KIF---AK 59
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
+ N+ + I +T S + +E+ + D ++E I++ + P
Sbjct: 60 AMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDE--IRE-IRDKSTYAPSL 116
Query: 125 TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184
+ +KV +++EV LS A ++L +T+E+ + + IL K+ I SR
Sbjct: 117 AR----YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRF 172
Query: 185 RINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
S + I + + +I +KE + +A ++ +R A+
Sbjct: 173 EFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDAL 217
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 51/224 (22%), Positives = 98/224 (43%)
Query: 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAEK 65
+RP+ + V+ + + + L+ + ++ H LF GP G+GK T+ +VF A+
Sbjct: 10 WRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIA-----KVF---AKA 61
Query: 66 VKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDT 125
+ E+ L +T S ++ +E+ + D +++ I++ K P
Sbjct: 62 INCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDE--IRD-IRDKVKYAPSAV 118
Query: 126 KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185
+ +KV +++EV LS A ++L +T+E+ IL K+ I SRC
Sbjct: 119 E----YKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFE 174
Query: 186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ IV+ L + EG Q+ +A + +R A+
Sbjct: 175 FRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDAL 218
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 55/230 (23%), Positives = 98/230 (42%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAE 64
+YRP+ V+ + + L+K + E P LF GP G GK + L A+
Sbjct: 9 RYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARIL--------AK 60
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELS-PSDAGFQDRYVVQEVIKEMAKNRPI 123
+ + G E+ T ++ N +E+ S G D V++ IKE P
Sbjct: 61 ALNCVQREASEPCGECPSCREIATGTNLNVIEIDGASHTGVGD---VRQ-IKEEILFPPH 116
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
T+ +KV +++EV LS A ++L +T+E+ I ++ ++SRC
Sbjct: 117 GTR----YKVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQ 172
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+ +V L A++ + + G + +A +S S+R A F+
Sbjct: 173 FHFRLVDTQTLVCALAQAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFD 222
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 53/224 (23%), Positives = 89/224 (39%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKK-LVTEQDCPHLLFYGPPGSGKKTL--IMALLRQVFGPG 62
KYRP+T ++ + + LK ++ + G G+GK T I+A GP
Sbjct: 15 KYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCIGPD 74
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + + HV++ DA R V + I+E+ +
Sbjct: 75 GNGGPTTEPCGKCE--------HCVAIMEGRHVDVMEMDAA--SRTGVND-IREIIDSVR 123
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
R +K+ +++EV LS A ++L +T+E+ A + I KV + SRC
Sbjct: 124 YRAASAR-YKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ 182
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPS---GFATRLAEKSNR 223
+ E ++ ++ IA EG Q+ R AE S R
Sbjct: 183 RFDLRRIEPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSAR 226
>UNIPROTKB|P06710 [details] [associations]
symbol:dnaX species:83333 "Escherichia coli K-12"
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IDA] [GO:0043846 "DNA
polymerase III, clamp loader complex" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0030337 "DNA polymerase
processivity factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] UniProt:P06710 InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR021029 InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170
PRINTS:PR00300 SMART:SM00382 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 EMBL:U82664 EMBL:X04487
EMBL:M38777 GO:GO:0003887 eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 EMBL:X04275 PIR:A25549 RefSeq:NP_415003.1
RefSeq:YP_488761.1 PDB:1JR3 PDB:1NJF PDB:1NJG PDB:1XXH PDB:1XXI
PDB:2AYA PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1NJF PDBsum:1NJG PDBsum:1XXH PDBsum:1XXI PDBsum:2AYA
PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH PDBsum:3GLI
ProteinModelPortal:P06710 SMR:P06710 DIP:DIP-9464N IntAct:P06710
MINT:MINT-1222776 PRIDE:P06710 EnsemblBacteria:EBESCT00000003686
EnsemblBacteria:EBESCT00000015762 GeneID:12930852 GeneID:945105
KEGG:ecj:Y75_p0457 KEGG:eco:b0470 PATRIC:32116097 EchoBASE:EB0241
EcoGene:EG10245 HOGENOM:HOG000083934 OMA:VQLYYQT
ProtClustDB:PRK07994 BioCyc:EcoCyc:EG10245-MONOMER
BioCyc:EcoCyc:MONOMER0-2383 BioCyc:ECOL316407:JW0459-MONOMER
BindingDB:P06710 EvolutionaryTrace:P06710 Genevestigator:P06710
GO:GO:0043846 GO:GO:0030337 InterPro:IPR022001 Pfam:PF12168
Length = 643
Score = 127 (49.8 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 62/226 (27%), Positives = 96/226 (42%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RP+T V+ + + L ++ H LF G G GK T I LL + G E
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGK-TSIARLLAK--GLNCE 65
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
D R I+ V+L DA R V++ +++ N +
Sbjct: 66 TGITATPCGVCD-NCREIE-------QGRFVDLIEIDAA--SRTKVEDT-RDLLDN--VQ 112
Query: 125 TKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
RG FKV +++EV LSR + ++L +T+E+ + +L K+ I SRCL
Sbjct: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ + EQI LE I +E + LA + SLR A+
Sbjct: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 218
>GENEDB_PFALCIPARUM|PFB0895c [details] [associations]
symbol:PFB0895c "replication factor C subunit 1,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 127 (49.8 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 55/238 (23%), Positives = 111/238 (46%)
Query: 2 LWVDKYRPKTLDQVIVH-QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWV+KYRPK L++++ + Q++ + L + +D + G +KT R +F
Sbjct: 352 LWVEKYRPKNLNELVGNNQNVIKLQNWLASWED---VCIKGIKKPAQKTF-----RGIF- 402
Query: 61 PGAEKVKVENKTWKIDAG-SRNIDLELTTLSSA-NHVELSPSDAGFQDRYVVQEVIKEMA 118
E V AG + ++ + +S N +E + SD +++ V++ I EMA
Sbjct: 403 ---ENVNARCALLSGPAGIGKTTTAKIVSEASGYNVIEFNASDE--RNKAAVEK-ISEMA 456
Query: 119 KN--RPIDTKGKRGFKV-LVLNEVDKLS---REAQHSLRRTMEKYSASCRLILCCNS-SS 171
+ ++ K ++++EVD +S + ++ + +EK C +I CN +
Sbjct: 457 TGGYSIMSLNNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEK--TKCPIICICNDRQN 514
Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ ++C +++ + P + +VK L I KKEG+ + L E + +R+ +
Sbjct: 515 NKMRTLANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQML 572
>UNIPROTKB|O96271 [details] [associations]
symbol:PFB0895c "Replication factor C subunit 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 127 (49.8 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 55/238 (23%), Positives = 111/238 (46%)
Query: 2 LWVDKYRPKTLDQVIVH-QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWV+KYRPK L++++ + Q++ + L + +D + G +KT R +F
Sbjct: 352 LWVEKYRPKNLNELVGNNQNVIKLQNWLASWED---VCIKGIKKPAQKTF-----RGIF- 402
Query: 61 PGAEKVKVENKTWKIDAG-SRNIDLELTTLSSA-NHVELSPSDAGFQDRYVVQEVIKEMA 118
E V AG + ++ + +S N +E + SD +++ V++ I EMA
Sbjct: 403 ---ENVNARCALLSGPAGIGKTTTAKIVSEASGYNVIEFNASDE--RNKAAVEK-ISEMA 456
Query: 119 KN--RPIDTKGKRGFKV-LVLNEVDKLS---REAQHSLRRTMEKYSASCRLILCCNS-SS 171
+ ++ K ++++EVD +S + ++ + +EK C +I CN +
Sbjct: 457 TGGYSIMSLNNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEK--TKCPIICICNDRQN 514
Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ ++C +++ + P + +VK L I KKEG+ + L E + +R+ +
Sbjct: 515 NKMRTLANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQML 572
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 47/227 (20%), Positives = 93/227 (40%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV-FGPGA 63
KYRP+ + +I + + + L H + G G GK T L R + + P A
Sbjct: 35 KYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGLNYEPKA 94
Query: 64 E----KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
+ K K + +D + D + ++ H ++ DA + + + A+
Sbjct: 95 DAKGKKGKAAGPSIHLDPPGEHCD----AIMASRHPDVLELDAASRTGVADMRDLLDSAR 150
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ + +KV +++EV LS + ++L +T+E+ + I KV + S
Sbjct: 151 YGPVSAR----YKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVPVTVLS 206
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226
RC + ++ + L +A+ EG + +A + S+R
Sbjct: 207 RCQRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALIARAAEGSVR 253
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 50/226 (22%), Positives = 96/226 (42%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RP+T + + +++ L+ + H LF G G GK + L A+
Sbjct: 9 KWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARIL--------AK 60
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELS-PSDAGFQDRYVVQEVIKEMAKNRPI 123
+ E E+T +S + +E+ S+ G D ++E ++E K P
Sbjct: 61 ALNCEQGMSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDD---IRE-LRENVKYLP- 115
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
+ +K+ +++EV LS A ++L +T+E+ + I K+ I SRC
Sbjct: 116 ---SRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQR 172
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
++V L +I +EG+ + +A K + S+R ++
Sbjct: 173 FDFRRIPLAKVVARLRYIVDREGISISDESLAVVARKGDGSMRDSL 218
>TIGR_CMR|GSU_2067 [details] [associations]
symbol:GSU_2067 "ATPase, AAA family" species:243231
"Geobacter sulfurreducens PCA" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:NP_953116.1
ProteinModelPortal:Q74BH4 GeneID:2686000 KEGG:gsu:GSU2067
PATRIC:22026995 BioCyc:GSUL243231:GH27-1993-MONOMER Uniprot:Q74BH4
Length = 440
Score = 94 (38.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 5 DKYRPKTLDQVIVHQDI---AQNLKKLVTEQDCPHLLFYGPPGSGKKTL 50
++ RP+TLD+ + + + + L++L+ L+F+GPPGSGK TL
Sbjct: 20 ERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTL 68
Score = 68 (29.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 31/133 (23%), Positives = 65/133 (48%)
Query: 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169
++E++KE + + +G+ +L ++E+ + ++ Q + +E+ + + N
Sbjct: 93 IREIVKEAEEEKKY--RGRN--TILFVDEIHRFNKSQQDAFLPYVERGTFTIIGATTENP 148
Query: 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEF-IAKKE-GLQLPSGFATR------LAEKS 221
S +V + SRC + +N ++E + ++L +A E GL SG A +AE+S
Sbjct: 149 SFEVVAPLLSRCKVLVLNPLSQENVEQILRSALADPERGLGA-SGLAADDDALAFMAEQS 207
Query: 222 NRSLRRAILSFET 234
R A+ + ET
Sbjct: 208 GGDGRVALNTLET 220
>UNIPROTKB|Q3AG11 [details] [associations]
symbol:CHY_0051 "Putative DNA polymerase III, delta prime
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 eggNOG:COG0470
GO:GO:0003887 GO:GO:0009360 KO:K02341 RefSeq:YP_358923.1
ProteinModelPortal:Q3AG11 STRING:Q3AG11 GeneID:3726269
KEGG:chy:CHY_0051 PATRIC:21273299 OMA:FLIHISE
BioCyc:CHYD246194:GJCN-51-MONOMER Uniprot:Q3AG11
Length = 267
Score = 112 (44.5 bits), Expect = 0.00062, P = 0.00062
Identities = 48/162 (29%), Positives = 75/162 (46%)
Query: 79 SRNIDLELTTLSSAN-HVE---LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVL 134
S N +E L A H + L+P + F+ + V EV+ P KG R KV+
Sbjct: 43 SANDPVEAANLFEAGTHPDFLWLAPDGSSFKI-WQVNEVLIPKVYLTP--QKGSR--KVI 97
Query: 135 VLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQI 194
VL EVDK++ +A ++ +T+E+ A +L KV I SRC +++++ E
Sbjct: 98 VLEEVDKMTLDAANAFLKTLEEPPAGVTYLLIATMPEKVLPTIHSRCQKVKVSA---EDF 154
Query: 195 VKVLEFIAKK--EGLQLPSGFATRLAEKSNRS-LRRAILSFE 233
+ A+K E L LP + EK R L +L+ E
Sbjct: 155 TGQYKGYAEKFYELLTLPWEEFYKKTEKITREELNNLLLAGE 196
>TIGR_CMR|CHY_0051 [details] [associations]
symbol:CHY_0051 "putative DNA polymerase III, delta prime
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 eggNOG:COG0470
GO:GO:0003887 GO:GO:0009360 KO:K02341 RefSeq:YP_358923.1
ProteinModelPortal:Q3AG11 STRING:Q3AG11 GeneID:3726269
KEGG:chy:CHY_0051 PATRIC:21273299 OMA:FLIHISE
BioCyc:CHYD246194:GJCN-51-MONOMER Uniprot:Q3AG11
Length = 267
Score = 112 (44.5 bits), Expect = 0.00062, P = 0.00062
Identities = 48/162 (29%), Positives = 75/162 (46%)
Query: 79 SRNIDLELTTLSSAN-HVE---LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVL 134
S N +E L A H + L+P + F+ + V EV+ P KG R KV+
Sbjct: 43 SANDPVEAANLFEAGTHPDFLWLAPDGSSFKI-WQVNEVLIPKVYLTP--QKGSR--KVI 97
Query: 135 VLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQI 194
VL EVDK++ +A ++ +T+E+ A +L KV I SRC +++++ E
Sbjct: 98 VLEEVDKMTLDAANAFLKTLEEPPAGVTYLLIATMPEKVLPTIHSRCQKVKVSA---EDF 154
Query: 195 VKVLEFIAKK--EGLQLPSGFATRLAEKSNRS-LRRAILSFE 233
+ A+K E L LP + EK R L +L+ E
Sbjct: 155 TGQYKGYAEKFYELLTLPWEEFYKKTEKITREELNNLLLAGE 196
>UNIPROTKB|F1NEP9 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 EMBL:AADN02015876 EMBL:AADN02015877 EMBL:AADN02015878
EMBL:AADN02015879 EMBL:AADN02015880 IPI:IPI00574416
Ensembl:ENSGALT00000023118 ArrayExpress:F1NEP9 Uniprot:F1NEP9
Length = 1147
Score = 107 (42.7 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 37/147 (25%), Positives = 71/147 (48%)
Query: 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPID------TKGKRGFKVLVLNEVDKLS-RE 145
++VEL+ SD + + ++EV+ E N I + G VL+++EVD ++ E
Sbjct: 667 SYVELNASDT--RSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEVDGMAGNE 724
Query: 146 AQHSLRRTMEKYSASCRLILC-CNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIA 202
+ ++ + + I+C CN + K+ + C ++R P EQI + IA
Sbjct: 725 DRGGIQELIGLIRHTKVPIICMCNDRNHPKIRSLVHY-CFDLRFQRPRLEQIKGAMMSIA 783
Query: 203 KKEGLQLPSGFATRLAEKSNRSLRRAI 229
KEGL++P + +N+ +R+ +
Sbjct: 784 FKEGLKIPPPAMNEIILAANQDIRQVL 810
Score = 59 (25.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV 29
+LWVDKY+P +L +I Q KL+
Sbjct: 582 LLWVDKYKPVSLKAIIGQQGEQSCANKLL 610
>UNIPROTKB|E1C339 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AADN02015876 EMBL:AADN02015877
EMBL:AADN02015878 EMBL:AADN02015879 EMBL:AADN02015880
IPI:IPI00683437 Ensembl:ENSGALT00000029582 ArrayExpress:E1C339
Uniprot:E1C339
Length = 1153
Score = 107 (42.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 37/147 (25%), Positives = 71/147 (48%)
Query: 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPID------TKGKRGFKVLVLNEVDKLS-RE 145
++VEL+ SD + + ++EV+ E N I + G VL+++EVD ++ E
Sbjct: 671 SYVELNASDT--RSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEVDGMAGNE 728
Query: 146 AQHSLRRTMEKYSASCRLILC-CNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIA 202
+ ++ + + I+C CN + K+ + C ++R P EQI + IA
Sbjct: 729 DRGGIQELIGLIRHTKVPIICMCNDRNHPKIRSLVHY-CFDLRFQRPRLEQIKGAMMSIA 787
Query: 203 KKEGLQLPSGFATRLAEKSNRSLRRAI 229
KEGL++P + +N+ +R+ +
Sbjct: 788 FKEGLKIPPPAMNEIILAANQDIRQVL 814
Score = 59 (25.8 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV 29
+LWVDKY+P +L +I Q KL+
Sbjct: 586 LLWVDKYKPVSLKAIIGQQGEQSCANKLL 614
>ZFIN|ZDB-GENE-070410-99 [details] [associations]
symbol:rfc1 "replication factor C (activator 1) 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070410-99 GO:GO:0005524 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GeneTree:ENSGT00670000098003
GO:GO:0003689 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
EMBL:CR759875 EMBL:BX000461 IPI:IPI00851894 RefSeq:NP_001082960.2
UniGene:Dr.79216 Ensembl:ENSDART00000143948 GeneID:100037336
KEGG:dre:100037336 NextBio:20788508 ArrayExpress:F1Q5P6 Bgee:F1Q5P6
Uniprot:F1Q5P6
Length = 1147
Score = 101 (40.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 37/146 (25%), Positives = 71/146 (48%)
Query: 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPID---TKGKRGFK---VLVLNEVDKLS-RE 145
++VE++ S + + ++EVI E N I T + VL+++EVD ++ E
Sbjct: 664 SYVEMNASCT--RSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNE 721
Query: 146 AQHSLRRTMEKYSASCRLILC-CNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK 203
+ ++ + S I+C CN + + ++ + C ++R P EQI + IA
Sbjct: 722 DRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAF 781
Query: 204 KEGLQLPSGFATRLAEKSNRSLRRAI 229
KEGL++P + SN+ +R+ +
Sbjct: 782 KEGLKIPPPALNEVILASNQDIRQVL 807
Score = 65 (27.9 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV 29
+LWVDKYRP++L +I Q KL+
Sbjct: 576 LLWVDKYRPRSLKNLIGQQGDQSCANKLL 604
>TAIR|locus:2121934 [details] [associations]
symbol:AT4G24790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 IPI:IPI00532502
RefSeq:NP_001119046.1 RefSeq:NP_194210.2 UniGene:At.54505
ProteinModelPortal:F4JRP8 SMR:F4JRP8 PRIDE:F4JRP8
EnsemblPlants:AT4G24790.1 EnsemblPlants:AT4G24790.2 GeneID:828581
KEGG:ath:AT4G24790 OMA:TWLTVAL Uniprot:F4JRP8
Length = 857
Score = 124 (48.7 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 52/226 (23%), Positives = 99/226 (43%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
K+RPK+ D+++ + + + L + + LF+GP G+GK + ++F A
Sbjct: 244 KFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTST-----SKIF---AA 295
Query: 65 KVKVENKTWKIDAGSRNIDL--ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ ++ A SR L E + S ++ +D+G +R ++ + K+
Sbjct: 296 ALNCLSQA----AHSRPCGLCSECKSYFSGRGRDVMETDSGKLNR---PSYLRSLIKSAS 348
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ R FKV +++E L +E +L +++ +S IL + K+ + SR
Sbjct: 349 LPPVSSR-FKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQ 407
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
+ + I L I +EG+ G +A KS+ SLR A
Sbjct: 408 KYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDA 453
Score = 37 (18.1 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 255 EFVFEIASDIMQEQSPKRLFQVRGKL 280
E V++ +D+ S KR RG+L
Sbjct: 640 ESVWKTVTDLCCSDSLKRFLWKRGRL 665
>TIGR_CMR|GSU_2230 [details] [associations]
symbol:GSU_2230 "DNA polymerase III, delta prime subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR004622 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008408 GO:GO:0003887
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 HOGENOM:HOG000192593
OMA:AFIKIDQ RefSeq:NP_953279.1 ProteinModelPortal:Q74AW9
GeneID:2687562 KEGG:gsu:GSU2230 PATRIC:22027315
ProtClustDB:CLSK828770 BioCyc:GSUL243231:GH27-2186-MONOMER
Uniprot:Q74AW9
Length = 323
Score = 104 (41.7 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 34/121 (28%), Positives = 68/121 (56%)
Query: 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169
V+E+ +E++ RP++ K ++++ D+L+ A ++L +T+E+ + LIL +
Sbjct: 90 VRELQRELSL-RPVEAP----MKACIIDDADRLNPAAANALLKTLEEPPGNALLILLTTN 144
Query: 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK-SNRSLRRA 228
+ + +RSRC +R SP E++++ E++ G + P+ A RLA + SL RA
Sbjct: 145 PAGILPTVRSRCQLLRF-SPLPERVIE--EYLTDA-GRE-PA--AARLAASLAGGSLSRA 197
Query: 229 I 229
+
Sbjct: 198 L 198
Score = 47 (21.6 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 16 IVHQDIAQN-LKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVF 59
++ Q+ A N L++ + H LF G G GK T +A + F
Sbjct: 6 VLGQETAVNVLQRALRSGKTAHAYLFEGIEGCGKMTTALAFIEAAF 51
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.134 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 354 331 0.00090 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 115
No. of states in DFA: 610 (65 KB)
Total size of DFA: 230 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.82u 0.10s 26.92t Elapsed: 00:00:02
Total cpu time: 26.84u 0.10s 26.94t Elapsed: 00:00:02
Start: Mon May 20 18:13:46 2013 End: Mon May 20 18:13:48 2013
WARNINGS ISSUED: 1