BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018543
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 123/351 (35%), Positives = 204/351 (58%), Gaps = 13/351 (3%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L+ + ++++ LK L + +D PHLL YGP G+GKKT MALL +FG
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG ++K++ + + + A +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + + +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
I+S+CL IR +P++ +I +L + E +QL + R+A+ SN +LR ++L E+
Sbjct: 180 PIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
Query: 235 CRV-QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXX--XXXXXX 291
+ + K + I DW + ++ I++E+S L + R LY+
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII 299
Query: 292 XXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
+ K + +++ ++ ++ GNKAIFHLE F+AK M
Sbjct: 300 LKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD ++ + I + LK V PHLLF GPPG GK T +AL R++FG
Sbjct: 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SD + V++E +KE A+ +P
Sbjct: 73 --------ENWR-----------------HNFLELNASDE--RGINVIREKVKEFARTKP 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC
Sbjct: 106 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E I K L +IA+ EGL+L + + +RRAI
Sbjct: 163 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI 209
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+TLD+V+ ++ Q LK V ++ PHLLF GPPG+GK +AL R +FG
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +E++ SD D VV+ IKE A+
Sbjct: 65 ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN S++ E I+SRC
Sbjct: 97 PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E + K L I +KEG+++ L S R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+TLD+V+ ++ Q LK V ++ PHLLF GPPG+GK +AL R +FG
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +E++ SD D VV+ IKE A+
Sbjct: 65 ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN S++ E I+SRC
Sbjct: 97 PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E + K L I +KEG+++ L S R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 133/272 (48%), Gaps = 35/272 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ S+C R + + L FI+++E ++ G R+ + S LRR I ++
Sbjct: 179 PLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA 238
Query: 236 RVQQYPFKDNQAIPAMDWEEFVFEIASDIMQE 267
D + I + EE + DI+ E
Sbjct: 239 SKGAQYLGDGKNITSTQVEELAGVVPHDILIE 270
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V ++ ++K V E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + N+ LEL + D G VV+ IK+ A R
Sbjct: 73 --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ S+C
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R +E I + + + E L+L L E SN +RR + ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 33/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ L ++ +++ L+++ + + PH++ G PG GK T + L ++ G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR- 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNR 121
S A+ V EL+ SD D VV+ IK A+ +
Sbjct: 70 ---------------------------SYADGVLELNASDDRGID--VVRNQIKHFAQKK 100
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
GK K+++L+E D ++ AQ +LRRTME YS S R CN S+K+ E ++S+C
Sbjct: 101 LHLPPGKH--KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+R + ++E ++K L I K E ++ + + + +R+AI + ++
Sbjct: 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 48/213 (22%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGP-PGSGKKTLIMALLRQVFGPGAE 64
KYRP T+D+ I+ + K + ++ PH++ + P PG+GK T+ AL V A+
Sbjct: 19 KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NAD 75
Query: 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
+ V KID + LT +SA A F R
Sbjct: 76 MMFVNGSDCKIDF----VRGPLTNFASA---------ASFDGRQ---------------- 106
Query: 125 TKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
KV+V++E D+ E+Q LR ME YS++C +I+ N+ + + ++SRC
Sbjct: 107 -------KVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159
Query: 184 IRINSPTEE-------QIVKVLEFIAKKEGLQL 209
I PT+E Q+++ L I K EG+ +
Sbjct: 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI 192
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 22/250 (8%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
K+RP+T V+ + + L ++ H LF G G GK ++ L + + G
Sbjct: 16 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
A V + +I+ G R +DL +S VE R ++ V A+ R
Sbjct: 76 TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 126
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FKV +++EV LSR + ++L +T+E+ + +L K+ I SRC
Sbjct: 127 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 177
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L + + EQI LE I +E + LA + SLR A+ +
Sbjct: 178 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 237
Query: 242 FKDNQAIPAM 251
QA+ AM
Sbjct: 238 QVSTQAVSAM 247
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
K+RP+T V+ + + L ++ H LF G G GK ++ L + + G
Sbjct: 31 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
A V + +I+ G R +DL +S VE R ++ V A+ R
Sbjct: 91 TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FKV +++EV LSR + ++L +T+E+ + +L K+ I SRC
Sbjct: 142 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
L + + EQI LE I +E + LA + SLR A+
Sbjct: 193 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 240
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
K+RP+T V+ + + L ++ H LF G G GK ++ L + + G
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
A V + +I+ G R +DL +S VE R ++ V A+ R
Sbjct: 69 TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FKV +++EV LSR + ++L +T+E+ + +L K+ I SRC
Sbjct: 120 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
L + + EQI LE I +E + LA + SLR A+
Sbjct: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 218
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
K+RP+T V+ + + L ++ H LF G G GK ++ L + + G
Sbjct: 12 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 71
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
A V + +I+ G R +DL +S VE R ++ V A+ R
Sbjct: 72 TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 122
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FKV +++EV LSR + ++L +T+E+ + +L K+ I SRC
Sbjct: 123 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 173
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
L + + EQI LE I +E + LA + SLR A+
Sbjct: 174 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 221
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
K+RP+T V+ + + L ++ H LF G G GK ++ L + + G
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
A V + +I+ G R +DL +S VE R ++ V A+ R
Sbjct: 69 TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FKV +++EV LSR + ++L +T+E+ + +L K+ I SRC
Sbjct: 120 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
L + + EQI LE I +E + LA + SLR A+
Sbjct: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 218
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
K+RP+T V+ + + L ++ H LF G G GK ++ L + + G
Sbjct: 31 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
A V + +I+ G R +DL +S VE R ++ V A+ R
Sbjct: 91 TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FKV +++EV LSR + ++L +T+E+ + +L K+ I SRC
Sbjct: 142 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
L + + EQI LE I +E + LA + SLR A+
Sbjct: 193 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 240
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
RPKTLD+ I + + Q L+ + ++ HLL +GPPG GK TL + L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
R GP EK
Sbjct: 67 RVTSGPAIEK 76
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
RPKTLD+ I + + Q L+ + ++ HLL +GPPG GK TL + L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
R GP EK
Sbjct: 67 RVTSGPAIEK 76
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
RPKTLD+ I + + Q L+ + ++ HLL +GPPG GK TL + L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
R GP EK
Sbjct: 67 RVTSGPAIEK 76
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 50/238 (21%)
Query: 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL---LFYGPPGSGKKTLIMALLRQVFGPG 62
+ RP+ L Q I Q + K L + HL + +GPPG+GK TL + R
Sbjct: 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---- 74
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
N D+E +S +G ++ ++E I+ +NR
Sbjct: 75 ------------------NADVE----------RISAVTSGVKE---IREAIERARQNR- 102
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
G+R +L ++EV + ++ Q + +E + + N S ++ A+ SR
Sbjct: 103 --NAGRR--TILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRAR 158
Query: 183 NIRINSPTEEQIVKVL----EFIAKKEGLQ---LPSGFATRLAEKSNRSLRRAILSFE 233
+ S + E I +VL E + G Q LP +AE N RRA+ + E
Sbjct: 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216
>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside
Triphosphatase
Length = 189
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN-KTWKIDAGSRNIDLELTTLSSA-- 92
H+ GPPG GK TLI + G V V+ T ++ G R I ++ TLS
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSG---VPVDGFYTEEVRQGGRRIGFDVVTLSGTRG 59
Query: 93 --NHVELSPSDAGFQDR---YVVQEVIKE---MAKNRPIDTKGKRGFKVLVLNEVDKLSR 144
+ V L P + R YVV E + R D G +V V++E+ K+
Sbjct: 60 PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMEL 119
Query: 145 EAQHSLRRTMEKYSASCRLILCCNSSSK-----VTEAIRSR 180
+Q ++ + S +IL K + E IR+R
Sbjct: 120 FSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNR 160
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In
Complex With Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In
Complex With Adenosine-5'-Diphosphate
Length = 338
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVT----EQDC-PHLLFYGPPGSGKKTL 50
RP D I + I +NL + +C H+LF GP G GK TL
Sbjct: 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTL 71
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTL 50
RPK+LD+ I +++ + L L E + H+L GPPG GK TL
Sbjct: 20 RPKSLDEFIGQENVKKKLS-LALEAAKMRGEVLDHVLLAGPPGLGKTTL 67
>pdb|4I8Q|A Chain A, Structure Of The Aminoaldehyde Dehydrogenase 1 E260a
Mutant From Solanum Lycopersicum (slamadh1-e260a)
Length = 514
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 133 VLVLNEVDKLSREAQHSL----RRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS 188
++V +++D L A+ +L T + SA+ RLI+ N +S + + NI+I+
Sbjct: 280 IVVFDDIDNLDIAAEWTLFGIFANTGQVCSATSRLIVQENIASAFMDRLLKWTKNIKISD 339
Query: 189 PTEE-----------QIVKVLEFI--AKKEGLQLPSG 212
P EE Q KVL+FI AK EG + G
Sbjct: 340 PLEEDCKLGPVVSAGQYEKVLKFISNAKSEGATILCG 376
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTL 50
RPK+LD+ I +++ + L L E + H+L GPPG GK TL
Sbjct: 20 RPKSLDEFIGQENVKKKLS-LALEAAKMRGEVLDHVLLAGPPGLGKTTL 67
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTL 50
RPK+LD+ I +++ + L L E + H+L GPPG GK TL
Sbjct: 20 RPKSLDEFIGQENVKKKLS-LALEAAKMRGEVLDHVLLAGPPGLGKTTL 67
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTL 50
RPK+LD+ I +++ + L L E + H+L GPPG GK TL
Sbjct: 20 RPKSLDEFIGQENVKKKLS-LALEAAKMRGEVLDHVLLAGPPGLGKTTL 67
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTL 50
RPK+LD+ I +++ + L L E + H+L GPPG GK TL
Sbjct: 20 RPKSLDEFIGQENVKKKLS-LALEAAKMRGEVLDHVLLAGPPGLGKTTL 67
>pdb|4I9B|A Chain A, Structure Of Aminoaldehyde Dehydrogenase 1 From Solanum
Lycopersium (slamadh1) With A Thiohemiacetal
Intermediate
pdb|4I9B|B Chain B, Structure Of Aminoaldehyde Dehydrogenase 1 From Solanum
Lycopersium (slamadh1) With A Thiohemiacetal
Intermediate
Length = 517
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 133 VLVLNEVDKLSREAQHSL----RRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS 188
++V +++D L A+ +L T + SA+ RLI+ N +S + + NI+I+
Sbjct: 280 IVVFDDIDNLDIAAEWTLFGIFANTGQVCSATSRLIVQENIASAFMDRLLKWTKNIKISD 339
Query: 189 PTEE-----------QIVKVLEFI--AKKEGLQLPSG 212
P EE Q KVL+FI AK EG + G
Sbjct: 340 PLEEDCKLGPVVSAGQYEKVLKFISNAKSEGATILCG 376
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTL 50
RPK+LD+ I +++ + L L E + H+L GPPG G+ TL
Sbjct: 20 RPKSLDEFIGQENVKKKLS-LALEAAKMRGEVLDHVLLAGPPGLGRTTL 67
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 37 LLFYGPPGSGKKTLIMAL 54
+LFYGPPG GK L A+
Sbjct: 52 VLFYGPPGCGKTLLAKAI 69
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 37 LLFYGPPGSGKKTLIMAL 54
+LFYGPPG GK L A+
Sbjct: 514 VLFYGPPGCGKTLLAKAI 531
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 37 LLFYGPPGSGKKTLIMAL 54
+LFYGPPG GK L A+
Sbjct: 514 VLFYGPPGCGKTLLAKAI 531
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAL 54
K +DQVI + + +K ++ H+L G PG+GK L A+
Sbjct: 38 KLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAM 80
>pdb|2AOT|A Chain A, Histamine Methyltransferase Complexed With The
Antihistamine Drug Diphenhydramine
pdb|2AOU|A Chain A, Histamine Methyltransferase Complexed With The
Antimalarial Drug Amodiaquine
Length = 292
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQ 208
SKV C+N + P+ EQI K E +AK L+
Sbjct: 72 SKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE 109
>pdb|1JQD|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|1JQD|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|2AOV|A Chain A, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOV|B Chain B, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOX|A Chain A, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
pdb|2AOX|B Chain B, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
Length = 292
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQ 208
SKV C+N + P+ EQI K E +AK L+
Sbjct: 72 SKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE 109
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 38 LFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69
+F GP G GK L AL +FG ++++
Sbjct: 525 IFLGPTGVGKTELARALAESIFGDEESMIRID 556
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 38 LFYGPPGSGKKTLIMALLRQVFGPG 62
+ +GPPG+GK T ++ ++ Q G
Sbjct: 209 IIHGPPGTGKTTTVVEIILQAVKQG 233
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 38 LFYGPPGSGKKTLIMALLRQVFGPG 62
+ +GPPG+GK T ++ ++ Q G
Sbjct: 209 IIHGPPGTGKTTTVVEIILQAVKQG 233
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 41 GPPGSGKKTLIMALLR-------QVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN 93
GP GSGK T++ L+R Q+ G + K++ + + G I L+ T L S
Sbjct: 388 GPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG---IVLQDTILFSTT 444
Query: 94 HVE-LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKR---GFKVLVLNEVDKLSREAQHS 149
E L + G D E IKE AK D K G++ ++ + + LS + Q
Sbjct: 445 VKENLKYGNPGATD-----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLS-QGQRQ 498
Query: 150 LRRTMEKYSASCRLILCCNSSSKV 173
L + A+ ++++ ++S V
Sbjct: 499 LLAITRAFLANPKILILDEATSNV 522
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,255,895
Number of Sequences: 62578
Number of extensions: 335845
Number of successful extensions: 1027
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 53
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)