BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018543
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1
Length = 356
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/348 (53%), Positives = 265/348 (76%), Gaps = 3/348 (0%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +P+ E I VL + +KEGL LPS A RLAEKS R+LR+A+L E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
F ++Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYELL +C+PP +++K LL EL
Sbjct: 240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299
Query: 302 LKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
L D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2
Length = 356
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/348 (53%), Positives = 264/348 (75%), Gaps = 3/348 (0%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
F +Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYELL +C+PP +++K LL EL
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299
Query: 302 LKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
L D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1
Length = 356
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/348 (53%), Positives = 263/348 (75%), Gaps = 3/348 (0%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L Q+ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
F +Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYELL +C+PP +++K LL EL
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299
Query: 302 LKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
L D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum
GN=rfc3 PE=3 SV=1
Length = 347
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 177/348 (50%), Positives = 262/348 (75%), Gaps = 3/348 (0%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW+DKY+P +LD++ H DI+ NLK ++ D PHLL YGP G+GKKT I+A+L++++G
Sbjct: 1 MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P A K+K++++T+K S+NI ++TT+SS H+E++P +AG DR V+Q +IKE+A++
Sbjct: 61 PNALKLKIDHRTFKHPTSSKNI--QITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
PID+ FK+++LNEVDKLS++AQH+LRRTMEKY+ CRLILCC+S++KV + I+SR
Sbjct: 119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
CL IR+ +P++E+I KVL +A E LPS A +A++S +LR A++ E+ + +QY
Sbjct: 179 CLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQY 238
Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
PF+ + +P +DWE ++ +I D +EQSP RL VRGKLYELL +C+PP ++ K LL E
Sbjct: 239 PFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLE 297
Query: 301 LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGF 348
+ K+LD +K E+ HWA+YYEH+ + G+K IFHLEAF+AKFMS+YK +
Sbjct: 298 IFKKLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345
>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=B14D6.460 PE=3 SV=1
Length = 352
Score = 352 bits (902), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 162/350 (46%), Positives = 244/350 (69%), Gaps = 3/350 (0%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H ++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSRC
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
L +R+ +PT ++I VL AKKEG + G R+AE+S R+LRRA+L +E Q
Sbjct: 180 LLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEK 239
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
D+ IP DWE + +IA +IM+E +P R+ QVR KLY+LL +C+P ++LK L ++L
Sbjct: 240 VTDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKL 299
Query: 302 LKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVA 351
+ +D +K +V +W+A+YEH++R G K IFHLEAFVAKFM I++ +L++
Sbjct: 300 IPLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYLMS 349
>sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc5 PE=1 SV=1
Length = 358
Score = 323 bits (829), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 153/349 (43%), Positives = 237/349 (67%), Gaps = 7/349 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW+D+YRPKTL + H+ +++ L L + + PHLL YGP G+GKKT ++A+LR+++G
Sbjct: 1 MLWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG+EK+K++ +T+ + + L++ +SS +H+E++PSD G DR ++QE++K++A++
Sbjct: 61 PGSEKLKIDQRTFLTPSSKK---LQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQS 117
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+D + K+ FKV+V+N D+L+R+AQ +LRRTMEKYS + RLIL NS+SK+ E IRSR
Sbjct: 118 AQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
L +R+ +PT E+I+ V+ I +GL+ P +A +R+LR+AIL ET +
Sbjct: 178 TLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSP 237
Query: 241 PFK---DNQA-IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKR 296
K D A +P DW+ F+ ++ ++QEQSP R+ VR LY+LL +C+PP +LK
Sbjct: 238 GNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKE 297
Query: 297 LLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345
LL L ++D ++ + AA YEH+ R GNK+IFHLEAFVA FM +Y
Sbjct: 298 LLSFFLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346
>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1
Length = 354
Score = 254 bits (649), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 220/351 (62%), Gaps = 13/351 (3%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L+ + ++++ LK L + +D PHLL YGP G+GKKT MALL +FG
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG ++K++ + + + A +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + + +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
I+SRCL IR +P++ +I +L + E +QL + R+A+ SN +LR ++L E+
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
Query: 235 CRV-QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV 293
+ + K + I DW + ++ I++E+S L + R LY+LL +C+P ++
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII 299
Query: 294 LKRLLYELL--KRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
LK L + LL + L+ K + +++ ++ ++ GNKAIFHLE F+AK M
Sbjct: 300 LKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350
>sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subunit L478 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L478 PE=3 SV=1
Length = 370
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 194/349 (55%), Gaps = 21/349 (6%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M + +KYRPK + + D+ + LK L + +D PH++ GP GSGKKTL+ LL ++
Sbjct: 1 MFFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYD 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
++ + + I+ S ++E+ L S H+ + P+ D+Y++QE+IK+ A +
Sbjct: 61 EDVNILR--KRKYNINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAMH 115
Query: 121 RPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ D K KR FK +V++ ++ L+ +Q +LRRTME+Y+ +CR I+ CN+ SK+ + +RS
Sbjct: 116 KSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRS 175
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR-VQ 238
RC + PT E I V+++IA E ++L + + N +L+ AI F C+ +
Sbjct: 176 RCRTFCVPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIW-FLNCKGLN 234
Query: 239 QYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQ----VRGKLYELLLNCVPPVVVL 294
PF A+D E F + S I++ ++ K +F+ +R +Y +L+ + ++
Sbjct: 235 CSPF------IALD-EAFDLVVES-ILECRTGKNIFKIHNDIRTNIYNILITNIKGSEII 286
Query: 295 KRLLYELLKRLDAE-IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
L+ +L++++D + I + +A+ E+ + G + I +E F++ M
Sbjct: 287 NILVDKLIRKIDDDVINMNIIQYASKAEYNLTHGRRDITDIEYFISGVM 335
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 169/352 (48%), Gaps = 53/352 (15%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRPK L +V+ QD+ + L+ V + PHLLF G G GK T +AL R++FG
Sbjct: 7 IWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
TW + N EL+ SD D VV+ IK+ A+
Sbjct: 66 ---------DTWNM-----------------NFRELNASDERGID--VVRNQIKQFARTA 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G FK+L L+E D L+++AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98 PL---GDATFKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
R T+E I + + IAKKEG+ + G + S +R+AI + + +
Sbjct: 155 AIYRFRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAAI---- 210
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRL-------FQVRGKLYELLL--NCVPPVV 292
+ E ++ I S+ ++ L F+ ++ L+ + P
Sbjct: 211 ------VSDHVTAENIYAITSNAKPQEITDLLARCLEGDFETAERMLHALMYDKGIAPNE 264
Query: 293 VLKRLLYELLKR--LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
+L +L E+ + LD +K ++ + +M G A ++A +A+ +
Sbjct: 265 LLNQLYREISRSETLDRRLKVDLIDHLGEADFRMSEGADADIQMDALLARIV 316
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 147 bits (372), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 166/352 (47%), Gaps = 56/352 (15%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRP+ L+ VI HQ I + L V + PHLLF GPPG GK +AL R+++G
Sbjct: 6 IWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYG- 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+TW +N +EL+ SD D VV+ IK A+
Sbjct: 65 ---------ETWH-----------------SNFIELNASDERGID--VVRNNIKNFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G+ FK++ L+E D L+ +AQ +LRRTME+Y+A+CR I+ CN SSK+ E I+SRC
Sbjct: 97 PL---GEAKFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
R I + IAK EGL++ L + +RRAI + ++
Sbjct: 154 AVYRFGPLNATDITTGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATIA-- 211
Query: 242 FKDNQAIPAMDWEEFVFEIAS--------DIMQEQSPKRLFQVRGKLYELL----LNCVP 289
KD A + +++ S D+++ + R KL ELL L+
Sbjct: 212 -KDITA-------DVIYQTTSTAKPKEIEDMLKLALNGQFMDSRNKLDELLITYGLSGTD 263
Query: 290 PVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKF 341
+ + R ++EL LD ++ + + ++ G +EA +A F
Sbjct: 264 IIDQIYRSMFEL--GLDEDVLVALVDRIGEADFRLTEGASERIQIEALLAHF 313
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 148/292 (50%), Gaps = 50/292 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +V+ H +I + L V ++ PHLLF G PG GK T +AL + ++G
Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
TW+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------DTWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR IL CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242
R + E +V+ L+ I++KE L L G + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTA------- 205
Query: 243 KDNQAIPAMDWEEFVFEIASDIMQEQSPK--------RLFQVRGKLYELLLN 286
A+ EE V+++AS ++ K + + R +LY L+++
Sbjct: 206 ---AAVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFVEAREQLYNLMID 254
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+TLD+V+ ++ Q LK V ++ PHLLF GPPG+GK +AL R +FG
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +E++ SD D VV+ IKE A+
Sbjct: 65 ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN S++ E I+SRC
Sbjct: 97 PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E + K L I +KEG+++ L S R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 50/292 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +V+ H +I + L V ++ PHLLF G PG GK T +AL + ++G
Sbjct: 5 WVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+TW+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------ETWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR +L CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242
R + E +V+ L+ I++KE L L G + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTA------- 205
Query: 243 KDNQAIPAMDWEEFVFEIASDIMQEQSPK--------RLFQVRGKLYELLLN 286
A+ EE V+++AS ++ K + + R +LY L+++
Sbjct: 206 ---AAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFVESREQLYNLMID 254
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 148/292 (50%), Gaps = 50/292 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +V+ H +I + L V ++ PHLLF G PG GK T +AL + ++G
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
TW+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------DTWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR IL CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242
R + E +V+ L+ I++KE L L G + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTA------- 205
Query: 243 KDNQAIPAMDWEEFVFEIASDIMQEQSPK--------RLFQVRGKLYELLLN 286
A+ EE V+++AS ++ K + + R +LY L+++
Sbjct: 206 ---AAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFVEAREQLYNLMID 254
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 50/292 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +V+ H +I + L V ++ PHLLF G PG GK T +AL + ++G
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+TW+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------ETWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR IL CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242
R + E +V+ L+ I++KE L L G + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTA------- 205
Query: 243 KDNQAIPAMDWEEFVFEIASDIMQEQSPK--------RLFQVRGKLYELLLN 286
A+ EE V+++AS ++ K + + + +LY L+++
Sbjct: 206 ---AAVSDTVTEEIVYKVASKARPDEIKKMTHLALNGKFVEAKEQLYNLMID 254
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 173/363 (47%), Gaps = 52/363 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+ W+ N +EL+ SD G V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 93
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I S
Sbjct: 94 TAPV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIIS 150
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
RC R + + + L++IAK EG+++ + E S +R+AI +
Sbjct: 151 RCAVFRFSPMPRHLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQVAAATN 210
Query: 240 YPFKDNQAI-------PAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPV 291
N P E F ++ D + + R K+ EL+ + V V
Sbjct: 211 KIVDRNVVAAAAAAIRPTDIVELFNLALSGDYL---------KAREKMRELMYVKGVAGV 261
Query: 292 VVLKRLLYELLK-RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLV 350
++ EL++ LD E K EV A ++++ +G L F+AK SI K
Sbjct: 262 DFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADEEIQLSYFLAKLGSIGKKIRA 321
Query: 351 ATF 353
A+
Sbjct: 322 ASL 324
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 123/234 (52%), Gaps = 31/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP L+QV + + LK V ++ PHLLF GPPG GK +++ R++FG
Sbjct: 14 IWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFG- 72
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N EL+ SD D +V+ IK AK
Sbjct: 73 --------EDLWR-----------------ENFTELNASDERGID--IVRNKIKNFAKTA 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME++S++CR IL CN SSK+ E I+SRC
Sbjct: 106 PI---GGAPFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R ++E I + LE+IA +GL + G L + +R+A+ S +
Sbjct: 163 AVYRFRRLSDEAIKERLEYIAGDQGLSITEGGYEALIYVAQGDMRKAVNSLQAA 216
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 148/292 (50%), Gaps = 50/292 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD+V+ HQ+I + LK V ++ PHLLF G PG GK T + L + ++G
Sbjct: 5 WVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
TWK N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------NTWK-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR +L CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242
R + E +VK L+ I++KE + + + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQT-------- 204
Query: 243 KDNQAIPAMDWEEFVFEIASDIMQEQSPK--------RLFQVRGKLYELLLN 286
A+ E ++++AS ++ K + + R +LY+L+++
Sbjct: 205 --GAAVSKNINETVIYKVASKARPDEIKKMTELALNGKFVEAREQLYKLMID 254
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 175/358 (48%), Gaps = 55/358 (15%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWV+KYRP++LD+++ ++I + LK+ V ++ PHLLF GPPG+GK T +AL ++G
Sbjct: 5 LWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYG- 63
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++W+ N +EL+ SD D V++ IK+ A+
Sbjct: 64 ---------ESWR-----------------DNTLELNASDERGID--VIRSRIKDYARTL 95
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK+++L+E D ++ +AQ +LRRTME +S + R IL N +SK+ E I+SRC
Sbjct: 96 PI---GDVPFKLVILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRC 152
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
R + + L +IA++EG+ + G + E+S LR+AI + +
Sbjct: 153 AVFRFQPLPKGDAFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAA------ 206
Query: 242 FKDNQAIPAMDWEEFVFEIASDI-------MQEQSPK-RLFQVRGKLYELLLN-CVPPVV 292
AI EE V+ + M E + K L + R KL LL N + V
Sbjct: 207 ----SAISRNVTEEVVYAALGRVKPKEVREMIESALKGNLLEARDKLRLLLYNYGLSGVD 262
Query: 293 VLKRLLYELLK----RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYK 346
+++ + E+L RLD E+ +++ G+ L A ++K + K
Sbjct: 263 IIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIVEGSDDEIQLMALLSKLALVSK 320
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 176/350 (50%), Gaps = 40/350 (11%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
+ IR N +E ++ L +IA+ EG+++ + E + +R+AI + + +
Sbjct: 152 VVMIRFNPLPKEAVISRLRYIAENEGVKISDDALETIYEFTQGDMRKAINALQIAAATEK 211
Query: 241 PFKDNQAIPAMDW--EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLL 298
++ A+ + E + ++ K + Q+ G + + V + +++++
Sbjct: 212 EITEDVVARALGMVSPRLLRETLQEALKGNFSKAMTQIYGFVVD---GGVGELEIIRQIH 268
Query: 299 YELLKRLDAE--IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYK 346
E+L RLD +K E+ + A + RG + + + +AK + K
Sbjct: 269 REVL-RLDVPEYVKPELAYIIAEAHYATLRGARGLTQIFGALAKIRRLLK 317
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 122/234 (52%), Gaps = 31/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP LDQV ++ + LK V ++ PHLLF GPPG GK +++ R++FG
Sbjct: 10 IWIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFG- 68
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N EL+ SD D VV+ IK AK
Sbjct: 69 --------EDLWR-----------------ENFTELNASDERGID--VVRTKIKNFAKTA 101
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G FK++ L+E D L+ +AQ +LRRTME++S +CR IL CN SS++ E I+SRC
Sbjct: 102 PM---GGAEFKIIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRC 158
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R ++E I K LE+IAK + L + L S +R+A+ S +
Sbjct: 159 AVFRFRRLSDEAIRKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAA 212
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 175/354 (49%), Gaps = 52/354 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+ W+ N +EL+ SD G V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 93
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I S
Sbjct: 94 TAPV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIIS 150
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI----LSFETC 235
RC R + + + L+FIAK EG++L + E S +R+AI ++ T
Sbjct: 151 RCAVFRFSPMPRSLMAERLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAAATN 210
Query: 236 RVQQYPFKDNQAI---PAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPV 291
+V + AI PA E F I+ D + + R KL EL+ L +
Sbjct: 211 KVVDANAVASAAIAVRPADIIELFNLAISGDFV---------KAREKLRELMYLKGIAGA 261
Query: 292 VVLKRLLYELLKR-LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344
++ EL++ +D +IK E+ A ++++ +G L + K +I
Sbjct: 262 DFIRAFQRELIRMPIDDDIKAEIAELLADVDYRLTQGADEEIQLTYLLTKLGAI 315
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 124/234 (52%), Gaps = 31/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP L+QV ++ + L V ++ PHLLF GPPG GK +++ R++FG
Sbjct: 14 IWIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFG- 72
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N EL+ SD D +V+ IK AK
Sbjct: 73 --------EDLWR-----------------ENFTELNASDERGID--IVRNKIKNFAKTA 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G FK++ L+E D L+ +AQ +LRRTMEK+S++CR IL CN SSK+ E I+SRC
Sbjct: 106 PM---GGAPFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R +++ I + LE+IAK++ L + G L + +R+A+ S +
Sbjct: 163 AVYRFRRLSDKAIRERLEYIAKEQDLSITDGGYEALIYVAQGDMRKAVNSLQAA 216
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 165/351 (47%), Gaps = 52/351 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD+++ +DI L+ V + PHLLF G G GK T +AL R+ FG
Sbjct: 7 IWIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+W+ N E++ SD D VV+ IKE A+
Sbjct: 66 ---------DSWQ-----------------TNFREMNASDERGID--VVRNQIKEFARTS 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ FK+L L+E D L+ +AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98 PL---AGATFKILFLDEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
R E +++ IA EGL + G + ++ +R+AI + + + +
Sbjct: 155 AIYRFRPLDREAVIEETRRIAAAEGLTVTEGALDAIVYVASGDMRKAINALQGAAILRTD 214
Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPK--------RLFQVRGKLYELL-LNCVPPVV 292
EE +FEI + E+ + R + L EL + + P
Sbjct: 215 ID----------EETIFEITATARPEEIDELLDLSIGGRFDEAEQALLELTHVRGIAPNE 264
Query: 293 VLKRLLYELLKR-LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
++ + L++R +D +K ++ + ++ G + +EA +A+F+
Sbjct: 265 LINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGASSDIQMEALLARFV 315
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 170/350 (48%), Gaps = 40/350 (11%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
+ IR + +E + L +IA EG+++ + E + +RRAI + +
Sbjct: 152 TVMIRFSPLPKEAVFARLRYIADNEGVKISDDALEAIYEFTQGDMRRAINALQIAATTGK 211
Query: 241 PFKDNQAIPAMDW--EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLL 298
+ A+ + E +D + K Q+ G + + + + ++K+L
Sbjct: 212 EITEETVAKALGMVSPRLLRETLNDAFRGNFGKAATQIYGFVVD---GGIGELEIVKQLH 268
Query: 299 YELLKRLDAE--IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYK 346
E LK LD +K E+ + A + + RG + + +AK + K
Sbjct: 269 REALK-LDVPEYLKPEIAYIIAEAHYAILRGAHGLTQIYGALAKIRKLLK 317
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 31/230 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+ YRPKTLDQV + Q LKK + + PH+LFYG PG+GK + I+AL R++FGP
Sbjct: 21 WVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQ 80
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN-- 120
K +V +EL+ SD + +++E +K AK
Sbjct: 81 LMKSRV--------------------------LELNASDE--RGISIIREKVKSFAKTTV 112
Query: 121 -RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+D FK+++L+E D ++++AQ +LRRTME Y+ R L CN +++ + + S
Sbjct: 113 TNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSS 172
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R E +VK LEFIA + + + G L E S +R+AI
Sbjct: 173 RCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAI 222
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 173/350 (49%), Gaps = 40/350 (11%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
+ IR + +E + L +IA+ EG+++ + E + +RRAI + +
Sbjct: 152 TVMIRFSPLPKEAVFARLRYIAENEGVKVSDDALEAIYEFTQGDMRRAINALQIAATVSK 211
Query: 241 PFKDNQAIPAMDW--EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLL 298
+ A+ + E + ++ K Q+ G + + V + ++K++
Sbjct: 212 AVTEEVVAKALGMVSPRLLRETLYEAVKGSFGKAATQIYGFVAD---GGVGELEIIKQIH 268
Query: 299 YELLKRLDAE--IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYK 346
E+L RLD + +K E+ + A + + RG + + +AK + K
Sbjct: 269 REML-RLDVQEYVKPEIAYIIAEAHYAILRGAHGLTQIYGALAKVRRLLK 317
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 162/338 (47%), Gaps = 52/338 (15%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+ W+ N +EL+ SD G V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 93
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I S
Sbjct: 94 TAPV---GKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIIS 150
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
RC R + + + L IAK EG++L + E S +R+AI +
Sbjct: 151 RCAVFRFSPMPRSLMAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQVAAATS 210
Query: 240 YPFKDNQAI-------PAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPV 291
N PA E F D+ + R KL EL+ + + +
Sbjct: 211 KVVDANAVASATTMIRPADVVELFNLAFNGDVT---------KAREKLRELMYVKGIAGI 261
Query: 292 VVLKRLLYELLKR-LDAEIKHEVCHWAAYYEHKMRRGN 328
++ EL++ LD E+K E+ A ++++ +G+
Sbjct: 262 DFIRAFQRELIRMPLDDEVKAEIAELLAEVDYRLTQGS 299
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 173/360 (48%), Gaps = 50/360 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ ++V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGIGVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
C R + + + L IA+ EG++L + E S +R+AI +
Sbjct: 152 CAVFRFSPMPRHLMAERLREIARSEGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVSK 211
Query: 241 PFKDNQAI-------PAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVV 292
N P+ E F + D L + R KL EL+ + V V
Sbjct: 212 VVDANAVASAAAAVRPSDVLELFNLAMGGD---------LAKARDKLRELMYIKGVAGVD 262
Query: 293 VLKRLLYELLK-RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVA 351
+++ EL++ +LD ++K EV + ++++ +G L F+ K SI K VA
Sbjct: 263 LIRVFQRELIRMQLDDDVKAEVAELLSEVDYRLTQGADEEIQLMYFLMKLGSIGKKIRVA 322
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 167/358 (46%), Gaps = 65/358 (18%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRPK+LD+++ ++I + LKK V E++ PHLLF GPPG+GK T +AL+R ++G
Sbjct: 5 ILWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYG 64
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ +EL+ SD D V++ +KE A+
Sbjct: 65 NNYRQY---------------------------FLELNASDERGID--VIRNKVKEFART 95
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
FKV++L+E D ++ +AQ +LRRTME Y+ + R IL CN SK+ E I+SR
Sbjct: 96 V---ASNNVPFKVILLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSR 152
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
R +E +V L IAK E ++ P G T + + + +R+AI
Sbjct: 153 TALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKGIET-IFDITQGDMRKAI---------- 201
Query: 240 YPFKDNQAIPAMDWEEFVFEIASDIMQEQSPK------------RLFQVRGKLYELLLN- 286
N A + + E ++ PK + Q R KL ELL+N
Sbjct: 202 -----NVIQAASAYGKITVETVYKVLGLAQPKEIREMLHLALSGKFLQARDKLRELLINY 256
Query: 287 CVPPVVVLKRLLYELLKR---LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKF 341
+ ++K++ EL + ++K + +A E ++ G L AF+AK
Sbjct: 257 GLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGADDEIQLSAFLAKL 314
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD ++ H+ I + LK+ + + D PHLLF GP G GK T A+ ++V+G
Sbjct: 13 IWIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYG- 71
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 72 ---------DDWR-----------------ENFLELNASDQRGID--VVRDRIKSFARA- 102
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 103 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRC 159
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + + + + + IA EG++L L ++ +R+AI + V
Sbjct: 160 AVFRFSPLGDAAVDEQIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQAAAV 215
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 122/230 (53%), Gaps = 34/230 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK +D +I ++I + LK V +++ PHLLF GPPG+GK T +AL +++G
Sbjct: 3 IWTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG- 61
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D V++ +KE A+ +
Sbjct: 62 ---------DAWR-----------------ENFLELNASDERGID--VIRHKVKEFARAK 93
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+R+AQ +LRR MEKYS S R IL CN SK+ E I+SR
Sbjct: 94 PI---GDVPFKIVFLDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRV 150
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPS--GFATRLAEKSNRSLRRAI 229
+ +E +++ I K EGL L + L + + LR+AI
Sbjct: 151 TVFKFKPLEKEAFRELINRIVKGEGLILENEDEIINALYDIAEGDLRKAI 200
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 34/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD+V H+ + +KK V E PHLLF+GPPG+GK T I+A+ RQ++G
Sbjct: 19 WVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYG-- 76
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + RN+ L EL+ SD D VV++ IK A R
Sbjct: 77 --------KNY------RNMIL-----------ELNASDERGID--VVRDQIKTFASTRQ 109
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I + GFK+++L+E D ++ AQ++LRR +EKYSA R + N + K+ A+ SRC
Sbjct: 110 IFSS---GFKLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCT 166
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETC 235
R + E+ I L + ++E + L P F + L S+ +RRA+ + C
Sbjct: 167 RFRFSPLKEDAIKHRLAHVIEQESVDLSPEAFQS-LLHLSSGDMRRALNVLQAC 219
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 117/228 (51%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK LD VI + LK V D PHL+F GP G+GK + +AL ++FG
Sbjct: 4 IWTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
WK N +EL+ SD D +++ IK+ AK R
Sbjct: 63 ---------DDWK-----------------ENFLELNASDERGID--IIRNNIKDFAKIR 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P K GFK++ L+E D+L+ EAQ +LRRTME + ++ R I CN SSK+ I+SRC
Sbjct: 95 P---SNKLGFKIIFLDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRC 151
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ +R +E + + L IAK E + + E S+ +R+AI
Sbjct: 152 VVLRFRPLDKEAMERKLREIAKNEKFDIDDDSLDAIYEISDGDMRKAI 199
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 133/272 (48%), Gaps = 35/272 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R + + L FI+++E ++ G R+ + S LRR I ++
Sbjct: 179 PLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA 238
Query: 236 RVQQYPFKDNQAIPAMDWEEFVFEIASDIMQE 267
D + I + EE + DI+ E
Sbjct: 239 SKGAQYLGDGKNITSTQVEELAGVVPHDILIE 270
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 156/351 (44%), Gaps = 52/351 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP L ++ DI + L V + PHLLF G G GK T + L R+ FG
Sbjct: 7 IWIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+W++ N EL+ SD D VV+ IKE A+ R
Sbjct: 66 ---------DSWQM-----------------NFRELNASDERGID--VVRNQIKEFARTR 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P G FK+L L+E D L+ +AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98 P---AGDAAFKILFLDEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-- 239
R + + + + IA +E L + + + +R+AI + + +
Sbjct: 155 AIYRFRPLGPQAVKEEITRIAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAILSAT 214
Query: 240 ------YPFKDNQAIPAMDWEEFVFEIASDI-MQEQSPKRLFQVRGKLYELLLNCVPPVV 292
Y N A P E ++ D E RL + RG + P
Sbjct: 215 IEAPMVYAITSN-ARPEEIGELLTLSLSGDFDGAEALLTRLLRERG---------IAPNE 264
Query: 293 VLKRLLYELLKR-LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
++ + L KR +D +K E+ + ++ G + +EA +A+F+
Sbjct: 265 LINQCYRALTKRDMDRVLKVELIDALGETDFRLSEGASSDIQMEALIARFV 315
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 33/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD ++ + I LK+ V E+ P+L+F GP G GK T +AL R++ G
Sbjct: 8 WVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILG-- 65
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SDA D V+ IK + +P
Sbjct: 66 --------EYWR-----------------QNFLELNASDARGID--TVRTSIKNFCRLKP 98
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ F+++ L+EVD ++++AQH+LRR ME Y+ + IL CN SSK+ + I+SRC
Sbjct: 99 VGAP----FRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCA 154
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R QI+K LE+IA+KE L+ + + + LR+AI
Sbjct: 155 IFRFLPLKGHQIIKRLEYIAEKENLEYEAHALETIVYFAEGDLRKAI 201
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 34/230 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWV+KYRP++LD ++ + + + LK+ V +++ PHLLF GPPG+GK T AL +FG
Sbjct: 7 MLWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG 66
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
EN + +EL+ SD G V++E +KE A+
Sbjct: 67 --------ENYRQYM-------------------LELNASDERGIN---VIREKVKEFAR 96
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+R T + FK+++L+E D ++ +AQ +LRR ME YS+ R IL N SK+ + I+S
Sbjct: 97 SR---TPPEIPFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQS 153
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R +++ +++ L +IA+ EG+ + E S +R+AI
Sbjct: 154 RCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAI 203
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+ L+ V+ H DI + L+ V D PHLLF GP G+GK +++ ++++G
Sbjct: 11 IWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYG- 69
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 70 ---------DDWQ-----------------DNFLELNASDERGID--VVRDRIKDFARS- 100
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 101 ---SFGGHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRC 157
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R ++ + L IA+ EGL+ L ++ +RRAI + +
Sbjct: 158 AVFRFAQLGDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAA 211
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+ L+ V+ H DI + L+ V D PHLLF GP G+GK +++ ++++G
Sbjct: 11 IWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYG- 69
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 70 ---------DDWQ-----------------DNFLELNASDERGID--VVRDRIKDFARS- 100
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 101 ---SFGGHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRC 157
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R ++ + L IA+ EGL+ L ++ +RRAI + +
Sbjct: 158 AVFRFAQLGDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAA 211
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 79 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 112
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 113 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 169
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 170 RFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRAL 216
>sp|P38629|RFC3_YEAST Replication factor C subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC3 PE=1 SV=1
Length = 340
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V ++ ++K V E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + N+ LEL + D G VV+ IK+ A R
Sbjct: 73 --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ SRC
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R +E I + + + E L+L L E SN +RR + ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216
>sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rfcS PE=3 SV=2
Length = 318
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK+L ++ + Q LK V +++ PHLLF G G+GK + +AL ++FG
Sbjct: 4 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+WK N VE++ S+ D V++ IK++A+ +
Sbjct: 63 ---------DSWK-----------------ENMVEMNASNENGID--VIRNKIKDIARIK 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P GFK+L L+E D+L+ EAQ +LRRTME YS + R I CN SSK+ I+SR
Sbjct: 95 P---SNPLGFKILFLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRT 151
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ +R +E I + L+ IAK EG Q+ L E S +R+AI
Sbjct: 152 VVMRFRPVPDEYISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAI 199
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +++ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IIRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1
Length = 411
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 128/236 (54%), Gaps = 11/236 (4%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL +V + Q L + + + PH+LFYGPPG+GK + I+AL +Q++GP
Sbjct: 35 WVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPE 94
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V + G + ++ + + ++P+ Y V K+ + +
Sbjct: 95 LMKSRVLELNASDERGISIVRQKVKDFAR-QQLSVAPT-------YNVMTEDKDGGEAKM 146
Query: 123 IDTKGKRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ + K FK++VL+E D ++++AQ +LRRTME YS R L CN +++ + + S
Sbjct: 147 VRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLAS 206
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
RC R S + V+ ++ IAK E ++L +G + L ++ LR+AI ++
Sbjct: 207 RCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSA 262
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRPKTLD+++ ++I LK+ V E++ PHLLF GPPG+GK T L +FG
Sbjct: 11 LLWAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG 70
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ +E + R ID V++ +KE A+
Sbjct: 71 ENYRQYMLELNA----SDERGID-------------------------VIRSKVKEFART 101
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R FK+++L+E D ++ +AQ +LRR ME Y+A+ R IL N SK+ E I+SR
Sbjct: 102 R---VAANIPFKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSR 158
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R +E ++ L++IA++E +++ + + S +RRAI
Sbjct: 159 CAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAI 207
>sp|O14003|RFC3_SCHPO Replication factor C subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc3 PE=1 SV=2
Length = 342
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 161/352 (45%), Gaps = 62/352 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L+ V+ H+DI L+K ++ PH+LFYGPPG+GK + I+A R+++GP
Sbjct: 25 WVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPN 84
Query: 63 AEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
N+ +++A R ID V+E IK A R
Sbjct: 85 -----YRNQLMELNASDDRGID-------------------------AVREQIKNFASTR 114
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I FK+++L+E D ++ AQ++LRR +EKY+ + R + CN +K++ AI+SRC
Sbjct: 115 QI---FASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRC 171
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
R ++I K ++ + + E + + S +R+A+ + C Y
Sbjct: 172 TRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQACHA-AYD 230
Query: 242 FKDNQAI--------PAMDWEEFVFEIASD--IMQEQSPKRLFQVRGKLYELLLNCVPPV 291
D AI P+ D + F+ I +D ++ + + Q +G + +L C+
Sbjct: 231 HIDVSAIYNCVGHPHPS-DIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQDILTCI--- 286
Query: 292 VVLKRLLYELLKRLDAEIKHE----VCHWAAYYEHKMRRGNKAIFHLEAFVA 339
+E L L EIK + A EH+M G L A +A
Sbjct: 287 -------FEALDEL--EIKPNAKIFILDQLATIEHRMSFGCSEKIQLSAMIA 329
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP++LD ++ +DI + LK+ V +++ PHLLF GPPG+GK T +AL+ ++G
Sbjct: 7 ILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYG 66
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ +EL+ SD D V++ +KE A+
Sbjct: 67 DNYRQY---------------------------FLELNASDERGID--VIRNKVKEFART 97
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
G FKV++L+E D ++ +AQ +LRRTME Y+ + R IL CN SK+ E I+SR
Sbjct: 98 V---AGGNVPFKVVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSR 154
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E +V L +IAK E ++ + + + +R+AI
Sbjct: 155 TALFRFYPLKKEDVVARLAYIAKNEKVEYDQKALETIYDITQGDMRKAI 203
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK+L ++ + Q LK V +++ PHLLF G G+GK + +AL ++FG
Sbjct: 4 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++WK N +E++ S+ D V++ IK++A+ R
Sbjct: 63 ---------ESWK-----------------ENFIEMNASNENGID--VIRNKIKDIARIR 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P GFK+L L+E D+L+ EAQ +LRRTME YS + R + CN SSK+ I+SR
Sbjct: 95 P---SNPLGFKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRT 151
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ +R +E I K L IAK EG + + E S +R+AI
Sbjct: 152 VVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAI 199
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 169/351 (48%), Gaps = 43/351 (12%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ L+ +I Q+I + L+ V +++ PHLLF G G+GK T +AL R+ FG
Sbjct: 7 IWIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W++ N EL+ SD D VV+ IK+ A+
Sbjct: 66 ---------EDWQM-----------------NFRELNASDERGID--VVRNQIKQFARTS 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P G FK+L L+E D L+ +AQ +LRRTME Y+ +CR IL CN S+K+ + I+SRC
Sbjct: 98 PF---GGSTFKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
R + + ++++ I+ + L + + + +R+AI + + +
Sbjct: 155 AIYRFRPLGRQAVSEMVKRISADQNLTVTEEVIDAIFYVAQGDMRKAINALQGAAILGRD 214
Query: 242 FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLN--CVPPVVVLKRL 297
+ AI A E + D + + S F G + LL+ + P ++ +L
Sbjct: 215 ISPDMIFAITATARPEEI-----DDLIDLSLAGNFLGAGSSLQALLHDRGIAPQELISQL 269
Query: 298 LYELLKR-LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG 347
++KR L +K + + ++ G + +++ +AKF+ +Y G
Sbjct: 270 YRAVVKRDLPEAVKVRLIDSLGETDFRLSEGAGSDIQMQSLIAKFV-MYGG 319
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,836,706
Number of Sequences: 539616
Number of extensions: 4989996
Number of successful extensions: 20746
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 528
Number of HSP's that attempted gapping in prelim test: 20273
Number of HSP's gapped (non-prelim): 837
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)