Query 018543
Match_columns 354
No_of_seqs 356 out of 3460
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2035 Replication factor C, 100.0 5.6E-70 1.2E-74 452.5 35.1 349 1-352 1-350 (351)
2 KOG0991 Replication factor C, 100.0 2.4E-53 5.2E-58 345.1 26.0 309 2-345 16-327 (333)
3 PLN03025 replication factor C 100.0 3.7E-52 8E-57 376.1 34.2 310 1-345 1-313 (319)
4 KOG0989 Replication factor C, 100.0 1.1E-52 2.3E-57 355.1 27.7 312 1-344 24-344 (346)
5 PRK14958 DNA polymerase III su 100.0 2E-45 4.3E-50 347.1 31.8 323 2-343 5-355 (509)
6 PRK08451 DNA polymerase III su 100.0 4.2E-45 9E-50 342.4 33.5 323 2-345 3-336 (535)
7 PRK07003 DNA polymerase III su 100.0 2.6E-45 5.6E-50 348.2 32.3 322 2-343 5-357 (830)
8 PRK14964 DNA polymerase III su 100.0 4.5E-45 9.7E-50 339.4 32.3 323 1-343 1-353 (491)
9 PRK14956 DNA polymerase III su 100.0 4.9E-45 1.1E-49 335.2 30.4 324 2-343 7-368 (484)
10 PRK14952 DNA polymerase III su 100.0 1.1E-44 2.4E-49 344.4 33.3 324 1-343 1-362 (584)
11 PRK12323 DNA polymerase III su 100.0 1.6E-44 3.4E-49 339.0 30.8 328 2-344 5-363 (700)
12 PRK00440 rfc replication facto 100.0 1.4E-43 3.1E-48 322.0 34.7 309 2-346 6-318 (319)
13 PRK12402 replication factor C 100.0 2.1E-43 4.5E-48 323.4 33.9 326 1-341 3-336 (337)
14 PRK14951 DNA polymerase III su 100.0 9.4E-44 2E-48 339.0 32.4 328 2-343 5-363 (618)
15 PRK14960 DNA polymerase III su 100.0 1E-43 2.2E-48 334.4 32.0 324 2-344 4-358 (702)
16 PRK14963 DNA polymerase III su 100.0 1.4E-43 3.1E-48 333.7 33.1 320 2-343 4-340 (504)
17 PRK06645 DNA polymerase III su 100.0 2.7E-43 5.7E-48 330.3 33.6 328 1-343 9-370 (507)
18 PRK14949 DNA polymerase III su 100.0 1.8E-43 3.9E-48 341.7 32.4 322 2-343 5-356 (944)
19 PRK14965 DNA polymerase III su 100.0 1.9E-43 4.1E-48 339.6 32.0 322 3-343 6-360 (576)
20 PRK07764 DNA polymerase III su 100.0 2.1E-43 4.6E-48 347.5 32.0 326 1-345 3-366 (824)
21 PRK06305 DNA polymerase III su 100.0 3.8E-43 8.2E-48 328.2 32.1 328 2-347 6-352 (451)
22 PRK14961 DNA polymerase III su 100.0 5.6E-43 1.2E-47 320.8 32.3 323 2-343 5-359 (363)
23 PRK07994 DNA polymerase III su 100.0 3.5E-43 7.6E-48 335.6 32.2 322 2-343 5-358 (647)
24 PRK14971 DNA polymerase III su 100.0 5.4E-43 1.2E-47 337.1 33.7 324 2-344 6-362 (614)
25 PRK08691 DNA polymerase III su 100.0 3.9E-43 8.4E-48 333.5 31.6 323 2-343 5-357 (709)
26 PRK05563 DNA polymerase III su 100.0 7.5E-43 1.6E-47 334.0 33.6 322 3-343 6-359 (559)
27 PRK09111 DNA polymerase III su 100.0 8.8E-43 1.9E-47 333.3 32.8 328 2-343 13-373 (598)
28 COG2812 DnaX DNA polymerase II 100.0 2E-43 4.4E-48 326.8 26.2 323 3-344 6-360 (515)
29 PRK14957 DNA polymerase III su 100.0 4.4E-42 9.5E-47 323.8 32.2 324 2-344 5-358 (546)
30 PRK14955 DNA polymerase III su 100.0 5.2E-42 1.1E-46 317.8 31.7 331 3-345 6-374 (397)
31 PRK14954 DNA polymerase III su 100.0 9E-42 1.9E-46 326.6 32.2 329 4-344 7-373 (620)
32 PRK14969 DNA polymerase III su 100.0 9.3E-42 2E-46 324.3 31.8 323 2-343 5-357 (527)
33 PRK07133 DNA polymerase III su 100.0 9E-42 2E-46 327.4 31.7 320 2-343 7-354 (725)
34 PRK14962 DNA polymerase III su 100.0 1.9E-41 4.1E-46 316.9 31.1 323 2-343 3-332 (472)
35 PRK05896 DNA polymerase III su 100.0 3.9E-42 8.5E-47 323.9 26.4 283 2-303 5-291 (605)
36 PRK06647 DNA polymerase III su 100.0 7E-41 1.5E-45 319.0 32.3 322 3-343 6-357 (563)
37 PRK14953 DNA polymerase III su 100.0 1.1E-40 2.4E-45 313.2 32.5 322 2-343 5-353 (486)
38 PRK14959 DNA polymerase III su 100.0 6.8E-41 1.5E-45 317.1 31.1 323 2-343 5-361 (624)
39 PRK14948 DNA polymerase III su 100.0 2.5E-40 5.4E-45 318.5 32.9 325 2-343 5-361 (620)
40 TIGR02397 dnaX_nterm DNA polym 100.0 2.9E-40 6.2E-45 304.6 32.1 322 2-342 3-355 (355)
41 PRK14950 DNA polymerase III su 100.0 3.8E-40 8.3E-45 318.4 32.6 323 3-343 6-360 (585)
42 COG2256 MGS1 ATPase related to 100.0 4.8E-40 1E-44 288.4 22.2 271 1-347 12-294 (436)
43 PRK14970 DNA polymerase III su 100.0 1.4E-38 3E-43 293.8 33.0 313 1-344 5-349 (367)
44 PHA02544 44 clamp loader, smal 100.0 4.7E-38 1E-42 285.1 31.9 296 1-345 9-313 (316)
45 PRK04132 replication factor C 100.0 8E-38 1.7E-42 305.7 30.0 272 37-344 567-844 (846)
46 PRK04195 replication factor C 100.0 6.4E-38 1.4E-42 297.8 27.3 297 1-344 2-313 (482)
47 KOG0990 Replication factor C, 100.0 1.5E-37 3.3E-42 264.6 23.6 310 1-345 29-351 (360)
48 PRK05564 DNA polymerase III su 100.0 4.8E-32 1E-36 244.5 31.9 283 10-342 1-311 (313)
49 KOG2028 ATPase related to the 100.0 6.5E-34 1.4E-38 245.9 17.5 276 2-347 127-424 (554)
50 PRK13342 recombination factor 100.0 4.5E-32 9.7E-37 253.2 27.5 280 2-323 1-298 (413)
51 PRK07993 DNA polymerase III su 100.0 6.6E-31 1.4E-35 236.4 31.0 307 18-346 7-324 (334)
52 PRK07940 DNA polymerase III su 100.0 4.4E-31 9.4E-36 241.8 29.5 203 11-233 3-215 (394)
53 PRK09112 DNA polymerase III su 100.0 3.9E-31 8.4E-36 239.2 28.4 220 6-234 16-243 (351)
54 PRK07399 DNA polymerase III su 100.0 1.9E-30 4.1E-35 231.7 30.0 286 11-343 2-312 (314)
55 PRK13341 recombination factor 100.0 6.2E-31 1.3E-35 256.6 28.3 298 1-339 16-344 (725)
56 PRK08058 DNA polymerase III su 100.0 3E-30 6.4E-35 233.3 28.0 310 11-342 3-327 (329)
57 PRK05707 DNA polymerase III su 100.0 1.1E-30 2.4E-35 234.3 24.9 303 23-344 10-324 (328)
58 PRK06871 DNA polymerase III su 100.0 2.8E-30 6E-35 229.8 25.8 303 18-342 7-320 (325)
59 PRK07471 DNA polymerase III su 100.0 3.1E-30 6.7E-35 234.5 22.1 217 7-233 13-240 (365)
60 PRK08769 DNA polymerase III su 100.0 2.2E-29 4.7E-34 223.8 23.2 194 18-233 9-210 (319)
61 PF05496 RuvB_N: Holliday junc 100.0 6.7E-30 1.5E-34 211.0 16.6 190 2-236 13-226 (233)
62 PRK06964 DNA polymerase III su 100.0 8.6E-28 1.9E-32 215.3 30.9 301 18-343 6-339 (342)
63 PRK06090 DNA polymerase III su 100.0 1.3E-27 2.8E-32 212.2 29.0 194 18-233 8-203 (319)
64 COG0470 HolB ATPase involved i 100.0 1.8E-28 3.9E-33 223.5 23.9 309 13-348 1-321 (325)
65 KOG1969 DNA replication checkp 100.0 1.3E-28 2.9E-33 229.7 22.4 289 2-325 260-619 (877)
66 PF13177 DNA_pol3_delta2: DNA 100.0 9.8E-28 2.1E-32 194.8 15.1 160 17-190 1-162 (162)
67 PRK07276 DNA polymerase III su 100.0 8.6E-26 1.9E-30 197.4 28.0 193 17-233 6-199 (290)
68 TIGR00678 holB DNA polymerase 100.0 4.5E-27 9.7E-32 196.9 18.4 186 23-228 2-188 (188)
69 PRK05917 DNA polymerase III su 100.0 3.6E-25 7.8E-30 192.7 28.9 269 20-347 4-279 (290)
70 PRK08699 DNA polymerase III su 99.9 4.1E-24 9E-29 191.7 29.6 292 18-345 6-321 (325)
71 COG2255 RuvB Holliday junction 99.9 3E-24 6.6E-29 180.8 22.2 187 5-236 18-228 (332)
72 PRK00080 ruvB Holliday junctio 99.9 9.5E-25 2.1E-29 198.4 20.7 190 2-236 14-227 (328)
73 PRK07132 DNA polymerase III su 99.9 1.3E-22 2.9E-27 179.1 30.6 289 19-345 2-298 (299)
74 TIGR00602 rad24 checkpoint pro 99.9 3.3E-24 7.1E-29 205.7 19.6 222 2-239 73-331 (637)
75 TIGR02902 spore_lonB ATP-depen 99.9 3.6E-24 7.9E-29 204.7 19.9 217 2-237 54-310 (531)
76 PRK05818 DNA polymerase III su 99.9 9.3E-24 2E-28 179.8 17.7 179 33-235 5-194 (261)
77 TIGR00635 ruvB Holliday juncti 99.9 4.9E-23 1.1E-27 185.9 17.8 182 10-236 1-206 (305)
78 PF03215 Rad17: Rad17 cell cyc 99.9 2.8E-22 6.1E-27 189.2 19.0 221 2-238 8-270 (519)
79 TIGR02881 spore_V_K stage V sp 99.9 6.7E-22 1.5E-26 173.9 17.6 191 11-238 4-237 (261)
80 PRK08084 DNA replication initi 99.9 3.4E-21 7.3E-26 166.4 19.7 182 11-236 20-214 (235)
81 KOG1970 Checkpoint RAD17-RFC c 99.9 3E-21 6.6E-26 175.8 16.8 219 2-238 71-322 (634)
82 PRK06893 DNA replication initi 99.9 1.9E-20 4.1E-25 161.2 18.8 185 8-236 11-208 (229)
83 PRK08727 hypothetical protein; 99.9 5.3E-20 1.1E-24 158.8 19.9 183 10-236 16-209 (233)
84 TIGR02903 spore_lon_C ATP-depe 99.8 1E-19 2.2E-24 176.8 20.5 215 4-236 145-399 (615)
85 PRK08903 DnaA regulatory inact 99.8 1.4E-19 3.1E-24 156.1 19.2 182 7-236 12-204 (227)
86 CHL00181 cbbX CbbX; Provisiona 99.8 1.6E-19 3.4E-24 159.8 17.6 187 14-238 24-253 (287)
87 TIGR03420 DnaA_homol_Hda DnaA 99.8 3.2E-19 6.8E-24 154.0 17.8 185 8-236 10-206 (226)
88 COG1223 Predicted ATPase (AAA+ 99.8 1.6E-19 3.4E-24 150.4 12.4 179 7-223 115-317 (368)
89 PRK06581 DNA polymerase III su 99.8 2.3E-18 4.9E-23 143.5 19.1 180 23-233 3-189 (263)
90 PRK06620 hypothetical protein; 99.8 1.7E-18 3.7E-23 146.8 18.1 167 11-236 14-194 (214)
91 PRK05907 hypothetical protein; 99.8 6.2E-17 1.4E-21 144.2 28.7 270 23-343 8-310 (311)
92 PRK05642 DNA replication initi 99.8 3.3E-18 7.1E-23 147.6 19.9 183 10-236 16-213 (234)
93 TIGR02880 cbbX_cfxQ probable R 99.8 2E-18 4.4E-23 152.9 18.2 187 14-238 23-252 (284)
94 PTZ00112 origin recognition co 99.8 1.9E-18 4.2E-23 166.5 18.5 215 5-238 750-988 (1164)
95 COG1222 RPT1 ATP-dependent 26S 99.8 9.1E-19 2E-23 152.4 14.2 182 4-223 142-355 (406)
96 TIGR02639 ClpA ATP-dependent C 99.8 1.8E-18 3.8E-23 172.4 16.4 202 3-237 172-403 (731)
97 PRK12422 chromosomal replicati 99.8 1.2E-17 2.7E-22 156.1 19.9 190 11-236 109-318 (445)
98 TIGR03345 VI_ClpV1 type VI sec 99.8 9.5E-18 2.1E-22 168.3 18.7 203 4-238 178-409 (852)
99 PRK14087 dnaA chromosomal repl 99.8 4.1E-17 8.8E-22 153.2 21.1 193 9-237 111-325 (450)
100 TIGR02928 orc1/cdc6 family rep 99.8 3.1E-17 6.6E-22 151.9 19.6 218 4-237 9-252 (365)
101 PF00308 Bac_DnaA: Bacterial d 99.8 1.5E-17 3.3E-22 141.8 16.1 192 11-237 6-214 (219)
102 PRK07452 DNA polymerase III su 99.8 5E-16 1.1E-20 141.4 26.9 270 35-345 2-325 (326)
103 PRK09087 hypothetical protein; 99.8 1.6E-17 3.5E-22 142.1 16.0 170 11-235 19-199 (226)
104 PRK14088 dnaA chromosomal repl 99.8 4.9E-17 1.1E-21 152.5 19.0 193 11-237 103-311 (440)
105 PRK00149 dnaA chromosomal repl 99.8 4.8E-17 1E-21 154.0 18.4 192 11-237 120-328 (450)
106 PRK14086 dnaA chromosomal repl 99.8 6.1E-16 1.3E-20 147.1 25.2 197 6-237 280-494 (617)
107 PRK05629 hypothetical protein; 99.7 1.5E-15 3.3E-20 137.4 26.6 212 128-343 62-315 (318)
108 PRK07914 hypothetical protein; 99.7 1.9E-15 4.1E-20 136.9 27.0 269 35-345 6-317 (320)
109 PRK00411 cdc6 cell division co 99.7 1.4E-15 3.1E-20 142.2 25.9 208 13-236 30-259 (394)
110 TIGR00362 DnaA chromosomal rep 99.7 8.8E-17 1.9E-21 150.4 16.7 192 11-237 108-316 (405)
111 KOG0730 AAA+-type ATPase [Post 99.7 1.2E-16 2.5E-21 149.3 16.3 191 8-237 429-650 (693)
112 PRK08487 DNA polymerase III su 99.7 1.4E-14 3.1E-19 131.6 27.9 275 23-344 4-325 (328)
113 PF06068 TIP49: TIP49 C-termin 99.7 1.8E-16 3.9E-21 140.0 15.0 105 131-236 279-396 (398)
114 TIGR01241 FtsH_fam ATP-depende 99.7 4.3E-16 9.3E-21 149.2 18.2 189 4-230 46-269 (495)
115 PTZ00361 26 proteosome regulat 99.7 1.7E-16 3.6E-21 147.2 14.9 185 1-223 171-387 (438)
116 PRK06585 holA DNA polymerase I 99.7 2.9E-14 6.4E-19 130.7 29.6 271 32-344 18-337 (343)
117 TIGR00763 lon ATP-dependent pr 99.7 1.1E-16 2.4E-21 160.5 14.3 193 14-235 321-550 (775)
118 COG1474 CDC6 Cdc6-related prot 99.7 3.1E-15 6.8E-20 136.2 22.4 215 5-239 12-245 (366)
119 TIGR03345 VI_ClpV1 type VI sec 99.7 5.5E-16 1.2E-20 155.7 18.9 199 13-235 566-826 (852)
120 COG0593 DnaA ATPase involved i 99.7 1.5E-15 3.2E-20 137.9 19.7 186 11-238 85-293 (408)
121 COG1224 TIP49 DNA helicase TIP 99.7 1.6E-15 3.4E-20 132.0 18.3 104 131-235 292-408 (450)
122 PTZ00454 26S protease regulato 99.7 1.4E-15 3E-20 140.2 18.7 192 7-236 139-363 (398)
123 PRK14700 recombination factor 99.7 4.6E-16 9.9E-21 134.4 13.6 156 160-347 8-171 (300)
124 KOG0733 Nuclear AAA ATPase (VC 99.7 1.5E-15 3.2E-20 140.4 17.4 184 11-232 188-403 (802)
125 TIGR03346 chaperone_ClpB ATP-d 99.7 1.1E-15 2.3E-20 154.7 18.0 204 3-238 163-395 (852)
126 TIGR01128 holA DNA polymerase 99.7 1.4E-14 3E-19 130.7 23.1 211 128-342 44-302 (302)
127 CHL00176 ftsH cell division pr 99.7 4.1E-15 8.8E-20 144.4 20.8 187 10-234 180-398 (638)
128 PRK05574 holA DNA polymerase I 99.7 6E-14 1.3E-18 128.7 27.2 224 110-343 61-338 (340)
129 PRK03992 proteasome-activating 99.7 2.5E-15 5.4E-20 139.2 18.1 177 9-223 127-335 (389)
130 CHL00095 clpC Clp protease ATP 99.7 2.6E-15 5.7E-20 151.5 19.1 185 13-221 509-760 (821)
131 KOG1968 Replication factor C, 99.7 5.7E-16 1.2E-20 153.0 13.1 202 1-238 308-538 (871)
132 TIGR03689 pup_AAA proteasome A 99.7 1.7E-15 3.7E-20 142.4 15.5 180 4-211 173-386 (512)
133 CHL00195 ycf46 Ycf46; Provisio 99.7 5.2E-15 1.1E-19 139.4 18.8 177 10-223 225-427 (489)
134 PRK08485 DNA polymerase III su 99.7 6.5E-16 1.4E-20 125.4 10.9 119 108-235 40-171 (206)
135 PRK10865 protein disaggregatio 99.6 3.5E-15 7.6E-20 150.4 16.0 203 4-238 169-400 (857)
136 CHL00095 clpC Clp protease ATP 99.6 5.6E-15 1.2E-19 149.1 17.2 201 5-238 171-400 (821)
137 KOG0734 AAA+-type ATPase conta 99.6 5E-15 1.1E-19 135.0 14.5 176 9-223 300-504 (752)
138 TIGR01243 CDC48 AAA family ATP 99.6 7.9E-15 1.7E-19 146.8 17.4 178 9-225 449-657 (733)
139 COG0542 clpA ATP-binding subun 99.6 7.1E-15 1.5E-19 142.4 16.3 185 13-221 491-733 (786)
140 PRK11034 clpA ATP-dependent Cl 99.6 6.9E-15 1.5E-19 145.2 16.4 204 8-238 181-408 (758)
141 PRK10787 DNA-binding ATP-depen 99.6 7.2E-15 1.6E-19 146.1 16.2 190 1-221 301-535 (784)
142 PRK11034 clpA ATP-dependent Cl 99.6 1E-14 2.2E-19 144.0 17.1 181 14-221 459-694 (758)
143 PRK10865 protein disaggregatio 99.6 2.7E-14 5.8E-19 144.1 20.0 198 12-233 567-822 (857)
144 TIGR01242 26Sp45 26S proteasom 99.6 6.1E-15 1.3E-19 136.0 13.7 179 7-223 116-326 (364)
145 PLN00020 ribulose bisphosphate 99.6 8.3E-15 1.8E-19 129.9 13.7 157 33-224 146-331 (413)
146 TIGR03346 chaperone_ClpB ATP-d 99.6 2.9E-14 6.2E-19 144.4 19.5 200 13-236 565-822 (852)
147 TIGR02639 ClpA ATP-dependent C 99.6 2.8E-14 6.1E-19 142.5 18.5 182 13-221 454-690 (731)
148 KOG0727 26S proteasome regulat 99.6 2.4E-14 5.2E-19 119.2 14.5 162 10-208 152-345 (408)
149 KOG0733 Nuclear AAA ATPase (VC 99.6 2.8E-14 6.1E-19 132.1 16.3 174 10-220 508-711 (802)
150 KOG2004 Mitochondrial ATP-depe 99.6 1.4E-14 3.1E-19 136.2 14.1 194 14-236 412-642 (906)
151 PF05673 DUF815: Protein of un 99.6 1.8E-13 3.8E-18 115.4 19.0 190 5-236 19-246 (249)
152 TIGR02640 gas_vesic_GvpN gas v 99.6 3.5E-13 7.5E-18 118.5 21.6 102 132-238 107-239 (262)
153 COG0466 Lon ATP-dependent Lon 99.6 2.7E-14 5.8E-19 135.0 14.9 194 14-236 324-554 (782)
154 KOG1942 DNA helicase, TBP-inte 99.6 2.5E-13 5.5E-18 115.4 18.0 102 131-233 297-412 (456)
155 KOG0738 AAA+-type ATPase [Post 99.6 1.4E-13 3E-18 121.3 16.9 175 10-223 209-415 (491)
156 TIGR03015 pepcterm_ATPase puta 99.6 5.1E-13 1.1E-17 118.4 20.0 200 18-235 28-242 (269)
157 KOG0731 AAA+-type ATPase conta 99.6 1.5E-13 3.3E-18 132.3 17.5 183 8-227 306-520 (774)
158 PRK13407 bchI magnesium chelat 99.5 7.2E-13 1.6E-17 119.1 18.3 225 7-235 2-282 (334)
159 PF00004 AAA: ATPase family as 99.5 7.3E-14 1.6E-18 109.8 10.2 115 37-187 1-131 (132)
160 KOG0728 26S proteasome regulat 99.5 1.1E-13 2.3E-18 115.3 10.7 168 3-207 137-336 (404)
161 KOG0737 AAA+-type ATPase [Post 99.5 3.4E-13 7.4E-18 118.5 14.2 183 10-230 89-301 (386)
162 TIGR01243 CDC48 AAA family ATP 99.5 9.7E-13 2.1E-17 131.9 18.0 180 9-227 174-383 (733)
163 KOG0652 26S proteasome regulat 99.5 7.9E-13 1.7E-17 110.8 14.4 175 10-222 168-374 (424)
164 KOG0739 AAA+-type ATPase [Post 99.5 3.6E-13 7.8E-18 114.8 12.0 176 11-223 131-333 (439)
165 TIGR02030 BchI-ChlI magnesium 99.5 3E-12 6.5E-17 115.4 18.7 219 12-235 3-285 (337)
166 KOG0736 Peroxisome assembly fa 99.5 3.2E-13 6.9E-18 128.2 12.6 181 6-225 665-879 (953)
167 COG1466 HolA DNA polymerase II 99.5 7E-11 1.5E-15 107.6 27.5 211 129-343 73-331 (334)
168 TIGR01817 nifA Nif-specific re 99.5 3.1E-12 6.8E-17 123.9 19.3 201 6-238 189-427 (534)
169 PRK10733 hflB ATP-dependent me 99.5 1.2E-12 2.6E-17 128.5 16.4 196 4-237 143-373 (644)
170 cd00009 AAA The AAA+ (ATPases 99.5 1.5E-12 3.2E-17 104.0 13.7 138 16-188 1-151 (151)
171 PRK05342 clpX ATP-dependent pr 99.5 3.3E-12 7.2E-17 118.2 17.0 179 12-221 69-357 (412)
172 KOG0743 AAA+-type ATPase [Post 99.5 3.3E-12 7.1E-17 115.5 16.4 151 8-203 196-384 (457)
173 COG0464 SpoVK ATPases of the A 99.5 2.1E-12 4.6E-17 124.2 16.0 177 10-223 239-445 (494)
174 KOG0729 26S proteasome regulat 99.4 3.3E-13 7.2E-18 113.3 8.8 179 1-222 165-380 (435)
175 KOG0742 AAA+-type ATPase [Post 99.4 2.1E-12 4.4E-17 114.7 14.1 157 12-205 354-531 (630)
176 KOG0726 26S proteasome regulat 99.4 7.2E-13 1.6E-17 112.6 10.1 161 3-200 175-367 (440)
177 PF01637 Arch_ATPase: Archaeal 99.4 3E-12 6.6E-17 110.7 13.4 203 15-229 1-232 (234)
178 KOG0740 AAA+-type ATPase [Post 99.4 2.9E-12 6.3E-17 116.6 13.2 178 5-223 145-354 (428)
179 CHL00081 chlI Mg-protoporyphyr 99.4 1.6E-11 3.5E-16 110.6 17.9 222 6-235 9-298 (350)
180 KOG2680 DNA helicase TIP49, TB 99.4 1.5E-11 3.2E-16 105.2 16.1 105 131-236 289-406 (454)
181 TIGR02974 phageshock_pspF psp 99.4 1.5E-11 3.2E-16 111.4 17.1 110 130-239 93-233 (329)
182 COG0465 HflB ATP-dependent Zn 99.4 5.7E-12 1.2E-16 119.4 13.9 184 10-231 147-365 (596)
183 TIGR00382 clpX endopeptidase C 99.4 2.3E-11 5.1E-16 112.0 16.6 189 15-234 79-379 (413)
184 PRK13531 regulatory ATPase Rav 99.4 2.4E-10 5.3E-15 106.1 23.1 153 14-200 21-192 (498)
185 CHL00206 ycf2 Ycf2; Provisiona 99.4 1.9E-11 4.1E-16 126.8 16.7 115 110-233 1721-1851(2281)
186 KOG2227 Pre-initiation complex 99.4 5.6E-12 1.2E-16 114.0 11.2 205 13-234 150-374 (529)
187 COG0542 clpA ATP-binding subun 99.3 2.1E-11 4.5E-16 118.6 14.9 203 9-238 166-392 (786)
188 TIGR02442 Cob-chelat-sub cobal 99.3 4.2E-11 9E-16 117.7 17.1 219 12-235 3-280 (633)
189 PRK05201 hslU ATP-dependent pr 99.3 4E-11 8.7E-16 109.1 15.3 108 130-237 249-404 (443)
190 PF01078 Mg_chelatase: Magnesi 99.3 6.9E-12 1.5E-16 103.7 9.1 46 12-60 2-47 (206)
191 TIGR01650 PD_CobS cobaltochela 99.3 2.4E-11 5.3E-16 107.8 13.0 185 7-221 39-252 (327)
192 TIGR00390 hslU ATP-dependent p 99.3 6E-11 1.3E-15 108.0 15.7 109 129-237 246-402 (441)
193 PRK11331 5-methylcytosine-spec 99.3 8.6E-11 1.9E-15 108.2 16.5 166 12-199 174-369 (459)
194 KOG0744 AAA+-type ATPase [Post 99.3 7E-11 1.5E-15 102.1 14.0 140 37-203 180-341 (423)
195 PRK11388 DNA-binding transcrip 99.3 1.6E-10 3.5E-15 114.5 18.8 198 10-238 322-553 (638)
196 COG2607 Predicted ATPase (AAA+ 99.3 4.7E-10 1E-14 93.3 18.1 191 5-237 52-279 (287)
197 PRK10820 DNA-binding transcrip 99.3 1.9E-10 4E-15 110.7 18.4 203 9-238 200-436 (520)
198 PRK11608 pspF phage shock prot 99.3 3.6E-10 7.8E-15 102.4 19.2 196 11-238 4-239 (326)
199 KOG0735 AAA+-type ATPase [Post 99.3 1.9E-10 4.2E-15 108.7 17.7 191 10-238 664-887 (952)
200 KOG1514 Origin recognition com 99.3 9.6E-10 2.1E-14 104.2 22.2 185 36-238 424-627 (767)
201 KOG0651 26S proteasome regulat 99.3 3.6E-11 7.8E-16 103.3 10.9 177 10-223 129-339 (388)
202 COG1126 GlnQ ABC-type polar am 99.3 6.7E-12 1.5E-16 102.8 6.2 159 12-182 8-207 (240)
203 PHA02244 ATPase-like protein 99.3 3E-10 6.5E-15 101.9 17.3 132 23-191 110-263 (383)
204 TIGR02329 propionate_PrpR prop 99.3 2.6E-10 5.7E-15 108.9 17.6 203 10-238 209-449 (526)
205 PRK05022 anaerobic nitric oxid 99.2 5.4E-10 1.2E-14 107.5 19.0 202 11-239 185-420 (509)
206 PRK15424 propionate catabolism 99.2 5.6E-10 1.2E-14 106.6 18.3 205 11-238 217-464 (538)
207 KOG0732 AAA+-type ATPase conta 99.2 3.8E-10 8.3E-15 112.2 16.8 190 10-231 262-480 (1080)
208 COG1221 PspF Transcriptional r 99.2 3.6E-10 7.9E-15 102.7 15.3 199 11-240 76-310 (403)
209 PF07724 AAA_2: AAA domain (Cd 99.2 1.6E-11 3.4E-16 100.4 5.8 105 35-171 4-131 (171)
210 COG0714 MoxR-like ATPases [Gen 99.2 3.2E-10 6.9E-15 103.3 14.7 152 15-199 26-199 (329)
211 COG4555 NatA ABC-type Na+ tran 99.2 6.1E-11 1.3E-15 96.0 8.5 152 21-186 17-208 (245)
212 PRK15429 formate hydrogenlyase 99.2 1.1E-09 2.4E-14 109.3 18.5 202 10-238 373-608 (686)
213 KOG0730 AAA+-type ATPase [Post 99.2 1.1E-09 2.4E-14 103.2 16.8 177 13-226 184-387 (693)
214 COG2204 AtoC Response regulato 99.2 1.5E-09 3.1E-14 100.6 17.1 195 11-239 139-374 (464)
215 PF07728 AAA_5: AAA domain (dy 99.2 3.1E-11 6.6E-16 95.9 5.3 52 130-181 65-139 (139)
216 COG1131 CcmA ABC-type multidru 99.2 2.4E-11 5.2E-16 108.3 5.0 150 19-182 18-208 (293)
217 TIGR00368 Mg chelatase-related 99.2 2.9E-10 6.3E-15 107.9 11.9 170 11-194 190-396 (499)
218 COG4152 ABC-type uncharacteriz 99.2 2.3E-11 5.1E-16 101.3 3.8 152 16-184 12-203 (300)
219 PRK12377 putative replication 99.1 9E-10 1.9E-14 95.2 13.3 152 5-190 66-236 (248)
220 smart00763 AAA_PrkA PrkA AAA d 99.1 3.1E-09 6.7E-14 95.5 17.0 92 128-219 234-347 (361)
221 PF08542 Rep_fac_C: Replicatio 99.1 9.7E-10 2.1E-14 79.9 11.2 84 254-341 5-89 (89)
222 KOG0735 AAA+-type ATPase [Post 99.1 5.3E-09 1.2E-13 99.2 18.5 167 35-235 432-620 (952)
223 PRK13765 ATP-dependent proteas 99.1 2.7E-09 5.9E-14 103.7 16.4 53 7-61 25-77 (637)
224 COG2884 FtsE Predicted ATPase 99.1 3.3E-10 7.1E-15 91.0 8.2 160 20-189 16-215 (223)
225 TIGR00764 lon_rel lon-related 99.1 1.8E-09 3.9E-14 105.3 14.8 107 129-235 216-367 (608)
226 KOG1051 Chaperone HSP104 and r 99.1 7.9E-10 1.7E-14 109.2 12.2 132 14-172 563-713 (898)
227 PRK08116 hypothetical protein; 99.1 5.4E-10 1.2E-14 98.2 9.9 155 5-191 77-251 (268)
228 TIGR02915 PEP_resp_reg putativ 99.1 9.3E-09 2E-13 97.9 19.1 196 11-238 137-371 (445)
229 PF00158 Sigma54_activat: Sigm 99.1 3.1E-09 6.7E-14 86.6 12.7 136 15-184 1-165 (168)
230 smart00350 MCM minichromosome 99.0 6E-09 1.3E-13 100.1 15.9 74 130-203 300-401 (509)
231 PF07726 AAA_3: ATPase family 99.0 4.6E-10 1E-14 85.2 6.5 51 132-182 64-130 (131)
232 PRK07952 DNA replication prote 99.0 1.2E-09 2.5E-14 94.2 9.4 154 4-190 63-235 (244)
233 cd03230 ABC_DR_subfamily_A Thi 99.0 7.3E-10 1.6E-14 91.3 7.9 131 37-184 29-168 (173)
234 PF06144 DNA_pol3_delta: DNA p 99.0 1.8E-09 4E-14 88.9 10.1 110 128-237 55-172 (172)
235 PF14532 Sigma54_activ_2: Sigm 99.0 3.8E-09 8.2E-14 83.6 11.3 58 132-189 71-138 (138)
236 KOG0741 AAA+-type ATPase [Post 99.0 5.9E-10 1.3E-14 102.3 7.4 156 37-221 259-436 (744)
237 COG1120 FepC ABC-type cobalami 99.0 2.8E-10 6.2E-15 97.6 5.1 147 19-170 15-199 (258)
238 PRK13537 nodulation ABC transp 99.0 9.9E-10 2.1E-14 98.8 8.6 150 21-184 22-211 (306)
239 cd03213 ABCG_EPDR ABCG transpo 99.0 2.2E-09 4.7E-14 90.2 9.8 146 21-184 24-185 (194)
240 COG1124 DppF ABC-type dipeptid 99.0 8.4E-10 1.8E-14 92.4 7.0 152 21-185 22-216 (252)
241 COG1125 OpuBA ABC-type proline 99.0 3E-10 6.5E-15 95.4 4.4 57 15-74 10-66 (309)
242 PRK08181 transposase; Validate 99.0 1.4E-09 3.1E-14 95.1 8.2 130 24-190 98-243 (269)
243 PRK13536 nodulation factor exp 99.0 1.7E-09 3.6E-14 98.5 8.8 136 37-184 70-245 (340)
244 COG1618 Predicted nucleotide k 99.0 2.6E-08 5.6E-13 78.0 13.9 153 37-202 8-172 (179)
245 PRK10923 glnG nitrogen regulat 99.0 3.5E-08 7.7E-13 94.6 18.2 197 11-238 136-370 (469)
246 TIGR01188 drrA daunorubicin re 99.0 4.6E-10 1E-14 101.0 4.8 142 28-184 15-197 (302)
247 PRK06526 transposase; Provisio 99.0 1.2E-09 2.6E-14 95.1 7.1 62 130-191 159-236 (254)
248 COG1239 ChlI Mg-chelatase subu 99.0 2.8E-08 6.1E-13 89.8 15.8 188 12-204 16-234 (423)
249 PRK09862 putative ATP-dependen 99.0 4.6E-09 9.9E-14 99.4 11.3 167 10-194 188-393 (506)
250 PF13173 AAA_14: AAA domain 99.0 3.9E-09 8.4E-14 82.4 9.1 120 36-194 4-127 (128)
251 cd03247 ABCC_cytochrome_bd The 99.0 2.2E-09 4.7E-14 88.9 7.9 134 29-183 25-168 (178)
252 cd03215 ABC_Carb_Monos_II This 99.0 2.2E-09 4.7E-14 89.3 7.8 137 36-183 28-176 (182)
253 cd03229 ABC_Class3 This class 99.0 1.5E-09 3.2E-14 90.0 6.7 131 37-181 29-171 (178)
254 COG3839 MalK ABC-type sugar tr 99.0 7.1E-10 1.5E-14 98.9 5.1 149 21-185 18-208 (338)
255 cd03269 ABC_putative_ATPase Th 99.0 2.7E-09 5.9E-14 90.9 8.5 55 129-184 145-201 (210)
256 cd03228 ABCC_MRP_Like The MRP 99.0 2.7E-09 5.8E-14 87.8 8.1 125 29-173 25-158 (171)
257 PRK15115 response regulator Gl 99.0 6.6E-08 1.4E-12 92.0 18.8 109 130-238 228-366 (444)
258 TIGR01818 ntrC nitrogen regula 98.9 5.4E-08 1.2E-12 93.2 18.2 109 131-239 229-367 (463)
259 COG3829 RocR Transcriptional r 98.9 5.5E-08 1.2E-12 90.5 17.0 204 9-237 241-477 (560)
260 cd03233 ABC_PDR_domain1 The pl 98.9 4E-09 8.7E-14 89.2 8.9 142 28-183 29-192 (202)
261 cd03222 ABC_RNaseL_inhibitor T 98.9 6.7E-09 1.5E-13 85.4 10.0 115 37-184 28-145 (177)
262 TIGR02031 BchD-ChlD magnesium 98.9 4.6E-08 1E-12 95.3 17.2 107 129-235 83-234 (589)
263 PF00931 NB-ARC: NB-ARC domain 98.9 7.6E-09 1.7E-13 92.5 10.7 98 130-231 101-201 (287)
264 PF05621 TniB: Bacterial TniB 98.9 1E-07 2.2E-12 83.4 17.1 109 130-238 145-268 (302)
265 smart00382 AAA ATPases associa 98.9 1.9E-08 4.1E-13 79.4 11.9 27 35-61 3-29 (148)
266 TIGR03522 GldA_ABC_ATP gliding 98.9 3.8E-09 8.1E-14 95.0 8.6 141 29-184 25-205 (301)
267 COG3604 FhlA Transcriptional r 98.9 1.3E-08 2.9E-13 93.3 12.0 204 11-239 221-456 (550)
268 COG1121 ZnuC ABC-type Mn/Zn tr 98.9 2.4E-09 5.3E-14 91.5 6.8 153 20-180 18-208 (254)
269 PF03266 NTPase_1: NTPase; In 98.9 1.8E-09 4E-14 87.9 5.7 153 36-195 1-164 (168)
270 KOG2170 ATPase of the AAA+ sup 98.9 5.7E-08 1.2E-12 83.7 14.8 176 15-220 84-318 (344)
271 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.9 3.5E-09 7.6E-14 90.7 7.4 54 129-184 157-213 (218)
272 cd03268 ABC_BcrA_bacitracin_re 98.9 4.8E-09 1E-13 89.2 8.2 134 37-184 29-199 (208)
273 cd03216 ABC_Carb_Monos_I This 98.9 7E-09 1.5E-13 84.5 8.8 130 29-183 23-154 (163)
274 PRK11361 acetoacetate metaboli 98.9 1.3E-07 2.7E-12 90.5 18.8 109 130-238 237-375 (457)
275 PRK04132 replication factor C 98.9 6.8E-10 1.5E-14 110.3 3.2 49 2-50 8-56 (846)
276 TIGR00960 3a0501s02 Type II (G 98.9 4.5E-09 9.8E-14 89.9 7.8 54 129-183 155-210 (216)
277 cd03263 ABC_subfamily_A The AB 98.9 5.8E-09 1.3E-13 89.5 8.4 147 22-183 18-204 (220)
278 cd03246 ABCC_Protease_Secretio 98.9 1.2E-08 2.6E-13 84.0 9.9 129 37-183 31-167 (173)
279 COG3267 ExeA Type II secretory 98.9 1.9E-08 4.2E-13 84.8 11.1 198 18-233 36-246 (269)
280 cd03232 ABC_PDR_domain2 The pl 98.9 6.5E-09 1.4E-13 87.2 8.4 129 37-181 36-179 (192)
281 PRK06921 hypothetical protein; 98.9 1.3E-08 2.8E-13 89.4 10.4 27 34-60 117-143 (266)
282 cd03218 ABC_YhbG The ABC trans 98.9 6.8E-09 1.5E-13 89.9 8.5 149 23-184 17-206 (232)
283 COG3842 PotA ABC-type spermidi 98.9 1.6E-09 3.4E-14 97.3 4.5 154 16-185 15-211 (352)
284 cd03264 ABC_drug_resistance_li 98.9 8.3E-09 1.8E-13 87.9 8.9 55 129-184 147-202 (211)
285 cd03217 ABC_FeS_Assembly ABC-t 98.9 4.6E-09 1E-13 88.7 7.1 144 24-183 18-177 (200)
286 TIGR01288 nodI ATP-binding ABC 98.9 6E-09 1.3E-13 93.8 8.2 148 22-184 20-208 (303)
287 TIGR02673 FtsE cell division A 98.9 6.9E-09 1.5E-13 88.7 8.2 54 129-183 154-209 (214)
288 PRK06835 DNA replication prote 98.9 2.2E-08 4.9E-13 90.2 11.8 136 21-190 168-318 (329)
289 COG1219 ClpX ATP-dependent pro 98.9 1E-07 2.2E-12 82.7 15.0 90 36-156 99-202 (408)
290 cd03266 ABC_NatA_sodium_export 98.9 6.7E-09 1.5E-13 89.0 7.9 146 23-183 22-208 (218)
291 cd03225 ABC_cobalt_CbiO_domain 98.9 5.7E-09 1.2E-13 89.0 7.4 54 129-183 151-206 (211)
292 PF01695 IstB_IS21: IstB-like 98.9 3.1E-09 6.7E-14 87.6 5.4 101 35-170 48-150 (178)
293 cd03294 ABC_Pro_Gly_Bertaine T 98.9 3.5E-09 7.6E-14 93.7 6.0 55 129-184 177-234 (269)
294 cd03265 ABC_DrrA DrrA is the A 98.9 1.1E-08 2.4E-13 87.7 9.0 144 25-183 19-204 (220)
295 COG1116 TauB ABC-type nitrate/ 98.9 3.9E-09 8.5E-14 89.1 5.9 144 19-171 16-192 (248)
296 COG4618 ArpD ABC-type protease 98.9 4.8E-09 1E-13 96.3 6.8 138 20-171 350-533 (580)
297 cd03258 ABC_MetN_methionine_tr 98.9 5.9E-09 1.3E-13 90.3 7.2 150 23-183 22-213 (233)
298 PRK13543 cytochrome c biogenes 98.8 1.8E-08 3.8E-13 86.1 9.8 142 23-181 28-207 (214)
299 cd03293 ABC_NrtD_SsuB_transpor 98.8 1.4E-08 3E-13 87.2 9.0 150 25-184 23-205 (220)
300 cd03262 ABC_HisP_GlnQ_permease 98.8 9E-09 1.9E-13 87.9 7.6 55 129-184 152-208 (213)
301 TIGR03410 urea_trans_UrtE urea 98.8 1.1E-08 2.4E-13 88.4 8.2 147 25-184 19-205 (230)
302 cd03259 ABC_Carb_Solutes_like 98.8 9.4E-09 2E-13 87.8 7.6 146 23-184 17-204 (213)
303 cd03301 ABC_MalK_N The N-termi 98.8 1.4E-08 3.1E-13 86.7 8.6 53 129-182 147-202 (213)
304 PRK09536 btuD corrinoid ABC tr 98.8 1.3E-08 2.9E-13 94.3 9.0 154 25-183 22-211 (402)
305 PHA00729 NTP-binding motif con 98.8 3.4E-08 7.4E-13 83.3 10.6 29 172-200 110-138 (226)
306 cd03261 ABC_Org_Solvent_Resist 98.8 1E-08 2.2E-13 88.9 7.8 55 129-184 153-210 (235)
307 TIGR03864 PQQ_ABC_ATP ABC tran 98.8 2.1E-08 4.5E-13 87.0 9.7 54 129-184 149-205 (236)
308 cd03224 ABC_TM1139_LivF_branch 98.8 1.4E-08 3E-13 87.4 8.4 152 28-183 22-204 (222)
309 cd03292 ABC_FtsE_transporter F 98.8 9.9E-09 2.1E-13 87.7 7.2 54 129-183 153-208 (214)
310 PRK10908 cell division protein 98.8 1.1E-08 2.4E-13 87.9 7.5 55 129-184 154-210 (222)
311 cd03226 ABC_cobalt_CbiO_domain 98.8 1.5E-08 3.2E-13 86.0 8.0 150 25-183 19-198 (205)
312 cd03219 ABC_Mj1267_LivG_branch 98.8 1.5E-08 3.2E-13 88.0 7.7 54 129-183 160-215 (236)
313 COG0606 Predicted ATPase with 98.8 1.6E-08 3.5E-13 92.7 8.0 48 11-61 177-224 (490)
314 COG2274 SunT ABC-type bacterio 98.8 6.2E-09 1.3E-13 102.6 5.5 140 20-172 487-670 (709)
315 TIGR03740 galliderm_ABC gallid 98.8 3.6E-08 7.8E-13 84.8 9.7 130 37-182 29-195 (223)
316 PTZ00111 DNA replication licen 98.8 6.1E-08 1.3E-12 96.3 12.4 73 130-202 557-657 (915)
317 COG1136 SalX ABC-type antimicr 98.8 2.9E-08 6.3E-13 83.6 8.7 137 25-170 24-203 (226)
318 PRK11153 metN DL-methionine tr 98.8 1.9E-08 4.1E-13 92.0 8.3 146 28-184 27-214 (343)
319 cd03223 ABCD_peroxisomal_ALDP 98.8 5.6E-08 1.2E-12 79.5 10.3 121 29-181 24-157 (166)
320 cd00267 ABC_ATPase ABC (ATP-bi 98.8 3.3E-08 7.1E-13 80.1 8.8 113 36-171 27-141 (157)
321 PRK11248 tauB taurine transpor 98.8 3.5E-08 7.7E-13 86.5 9.6 150 25-184 20-202 (255)
322 cd03237 ABC_RNaseL_inhibitor_d 98.8 5.2E-08 1.1E-12 84.9 10.5 55 129-184 132-189 (246)
323 TIGR01186 proV glycine betaine 98.8 2E-08 4.4E-13 91.9 8.3 145 28-182 15-201 (363)
324 cd03214 ABC_Iron-Siderophores_ 98.8 6.9E-09 1.5E-13 86.1 4.7 135 37-185 28-172 (180)
325 PRK13548 hmuV hemin importer A 98.8 2.4E-08 5.2E-13 87.8 8.3 54 130-184 158-214 (258)
326 cd03298 ABC_ThiQ_thiamine_tran 98.8 2.2E-08 4.7E-13 85.4 7.7 144 36-184 26-202 (211)
327 PRK10365 transcriptional regul 98.8 5.9E-07 1.3E-11 85.4 18.3 109 130-238 233-371 (441)
328 TIGR03265 PhnT2 putative 2-ami 98.8 2.3E-08 5E-13 91.5 8.2 132 37-182 33-206 (353)
329 cd03295 ABC_OpuCA_Osmoprotecti 98.8 2.2E-08 4.7E-13 87.3 7.6 55 129-184 152-209 (242)
330 TIGR02314 ABC_MetN D-methionin 98.8 2.6E-08 5.7E-13 90.6 8.4 150 23-183 22-213 (343)
331 PRK11650 ugpC glycerol-3-phosp 98.8 2.2E-08 4.7E-13 91.8 7.8 140 28-183 26-207 (356)
332 cd03251 ABCC_MsbA MsbA is an e 98.8 2.6E-08 5.6E-13 86.4 7.8 54 129-184 155-209 (234)
333 cd03296 ABC_CysA_sulfate_impor 98.8 2.6E-08 5.5E-13 86.7 7.8 152 25-183 21-209 (239)
334 PRK11000 maltose/maltodextrin 98.8 2.7E-08 5.8E-13 91.8 8.3 140 28-183 25-206 (369)
335 TIGR02315 ABC_phnC phosphonate 98.7 2.8E-08 6.1E-13 86.6 7.9 54 129-183 162-218 (243)
336 PRK13541 cytochrome c biogenes 98.7 1E-07 2.2E-12 80.2 11.0 123 36-173 28-186 (195)
337 cd03267 ABC_NatA_like Similar 98.7 1.4E-08 3E-13 88.2 5.8 54 129-183 170-226 (236)
338 PRK13539 cytochrome c biogenes 98.7 5.6E-08 1.2E-12 82.6 9.4 149 29-190 25-202 (207)
339 cd03254 ABCC_Glucan_exporter_l 98.7 3.1E-08 6.8E-13 85.5 8.0 54 129-184 156-210 (229)
340 PRK13647 cbiO cobalt transport 98.7 2.7E-08 6E-13 88.2 7.8 148 22-183 21-210 (274)
341 PRK11432 fbpC ferric transport 98.7 3.3E-08 7.1E-13 90.4 8.4 143 25-183 25-209 (351)
342 cd03257 ABC_NikE_OppD_transpor 98.7 3.9E-08 8.4E-13 84.9 8.4 55 129-184 162-219 (228)
343 PRK11614 livF leucine/isoleuci 98.7 3.3E-08 7.1E-13 85.9 7.9 158 23-184 22-210 (237)
344 TIGR03608 L_ocin_972_ABC putat 98.7 2.7E-08 5.9E-13 84.4 7.2 43 129-171 151-195 (206)
345 TIGR02868 CydC thiol reductant 98.7 2.7E-08 5.8E-13 96.8 8.0 134 22-169 351-528 (529)
346 PRK04841 transcriptional regul 98.7 2.1E-06 4.5E-11 89.2 22.5 209 1-229 1-223 (903)
347 PRK09183 transposase/IS protei 98.7 3.1E-08 6.7E-13 86.8 7.6 61 130-190 164-241 (259)
348 TIGR03258 PhnT 2-aminoethylpho 98.7 3.2E-08 7E-13 90.8 8.1 140 29-184 28-212 (362)
349 TIGR03873 F420-0_ABC_ATP propo 98.7 3.9E-08 8.5E-13 86.4 8.3 55 129-184 154-210 (256)
350 PRK14250 phosphate ABC transpo 98.7 4.8E-08 1E-12 85.0 8.8 156 23-184 20-205 (241)
351 TIGR01277 thiQ thiamine ABC tr 98.7 4.8E-08 1E-12 83.4 8.7 144 36-184 26-202 (213)
352 PRK10247 putative ABC transpor 98.7 4.2E-08 9E-13 84.5 8.3 156 23-184 24-210 (225)
353 cd03260 ABC_PstB_phosphate_tra 98.7 4.1E-08 8.9E-13 84.7 8.3 54 129-183 158-212 (227)
354 PRK10895 lipopolysaccharide AB 98.7 4.2E-08 9.2E-13 85.4 8.4 53 129-182 154-208 (241)
355 PRK13632 cbiO cobalt transport 98.7 3.9E-08 8.4E-13 87.2 8.3 54 129-184 159-215 (271)
356 PRK09493 glnQ glutamine ABC tr 98.7 3.3E-08 7.2E-13 86.0 7.7 55 129-184 153-209 (240)
357 TIGR01184 ntrCD nitrate transp 98.7 5.4E-08 1.2E-12 84.1 8.9 144 37-184 14-188 (230)
358 PRK11629 lolD lipoprotein tran 98.7 3.9E-08 8.5E-13 85.2 8.0 45 129-173 162-209 (233)
359 COG1118 CysA ABC-type sulfate/ 98.7 3E-08 6.4E-13 85.8 7.1 155 25-183 21-210 (345)
360 PRK11231 fecE iron-dicitrate t 98.7 3.8E-08 8.1E-13 86.5 8.0 55 129-184 155-211 (255)
361 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.7 9.6E-08 2.1E-12 76.1 9.6 111 37-184 29-140 (144)
362 PRK13538 cytochrome c biogenes 98.7 4.1E-08 8.9E-13 83.2 7.9 141 28-173 23-192 (204)
363 PRK13650 cbiO cobalt transport 98.7 2.7E-08 5.9E-13 88.5 7.1 150 28-184 29-213 (279)
364 PRK13540 cytochrome c biogenes 98.7 8E-08 1.7E-12 81.1 9.6 130 28-171 23-188 (200)
365 TIGR01189 ccmA heme ABC export 98.7 1.1E-07 2.5E-12 80.1 10.5 45 129-173 144-190 (198)
366 PRK13652 cbiO cobalt transport 98.7 4.4E-08 9.5E-13 87.1 8.3 152 28-184 26-211 (277)
367 PRK09452 potA putrescine/sperm 98.7 4.1E-08 9E-13 90.4 8.3 139 28-182 36-216 (375)
368 PRK14247 phosphate ABC transpo 98.7 6.8E-08 1.5E-12 84.6 9.3 55 129-184 163-218 (250)
369 cd03369 ABCC_NFT1 Domain 2 of 98.7 9.4E-08 2E-12 81.2 9.9 146 22-184 24-196 (207)
370 PRK13635 cbiO cobalt transport 98.7 3E-08 6.5E-13 88.2 7.1 157 21-184 22-213 (279)
371 KOG0745 Putative ATP-dependent 98.7 3.8E-07 8.3E-12 82.3 13.9 173 36-239 228-508 (564)
372 cd03256 ABC_PhnC_transporter A 98.7 4E-08 8.6E-13 85.6 7.7 54 129-183 161-217 (241)
373 PRK11124 artP arginine transpo 98.7 3.7E-08 8E-13 85.8 7.5 53 129-182 158-212 (242)
374 PF13401 AAA_22: AAA domain; P 98.7 1.6E-08 3.5E-13 79.1 4.7 36 132-169 89-125 (131)
375 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.7 1.2E-08 2.6E-13 87.8 4.2 143 37-184 51-215 (224)
376 PRK10584 putative ABC transpor 98.7 4.3E-08 9.3E-13 84.6 7.6 43 129-171 163-208 (228)
377 cd03231 ABC_CcmA_heme_exporter 98.7 4.5E-08 9.8E-13 82.7 7.6 151 24-183 18-197 (201)
378 cd03244 ABCC_MRP_domain2 Domai 98.7 8.4E-08 1.8E-12 82.4 9.4 45 129-173 156-201 (221)
379 TIGR00968 3a0106s01 sulfate AB 98.7 4.1E-08 8.9E-13 85.2 7.4 55 129-184 147-204 (237)
380 PRK11264 putative amino-acid A 98.7 6.5E-08 1.4E-12 84.7 8.7 55 129-184 161-217 (250)
381 COG4619 ABC-type uncharacteriz 98.7 1.8E-07 4E-12 73.9 10.0 43 29-74 26-68 (223)
382 PRK10070 glycine betaine trans 98.7 5.6E-08 1.2E-12 90.1 8.5 139 37-183 57-237 (400)
383 PRK10771 thiQ thiamine transpo 98.7 5E-08 1.1E-12 84.4 7.7 142 37-183 28-202 (232)
384 PRK13648 cbiO cobalt transport 98.7 4.6E-08 1E-12 86.6 7.6 151 28-184 31-215 (269)
385 PF05729 NACHT: NACHT domain 98.7 2.5E-07 5.4E-12 75.4 11.4 74 130-203 81-164 (166)
386 TIGR02211 LolD_lipo_ex lipopro 98.7 4.6E-08 9.9E-13 84.0 7.3 44 129-172 158-204 (221)
387 cd03245 ABCC_bacteriocin_expor 98.7 9.6E-08 2.1E-12 81.9 9.3 54 129-184 157-211 (220)
388 PRK10253 iron-enterobactin tra 98.7 5.7E-08 1.2E-12 85.8 8.0 55 129-184 160-217 (265)
389 cd03235 ABC_Metallic_Cations A 98.7 7.8E-08 1.7E-12 82.1 8.6 152 23-184 16-205 (213)
390 COG1122 CbiO ABC-type cobalt t 98.7 8.5E-08 1.8E-12 82.2 8.7 158 25-186 23-214 (235)
391 PRK11607 potG putrescine trans 98.7 6.1E-08 1.3E-12 89.5 8.4 133 37-183 48-222 (377)
392 PRK13638 cbiO cobalt transport 98.7 2.7E-08 5.9E-13 88.2 5.8 159 22-184 17-209 (271)
393 cd03253 ABCC_ATM1_transporter 98.7 5.6E-08 1.2E-12 84.4 7.6 54 129-184 154-208 (236)
394 PRK10575 iron-hydroxamate tran 98.7 6.9E-08 1.5E-12 85.3 8.3 55 129-184 164-221 (265)
395 PRK11144 modC molybdate transp 98.7 5.7E-08 1.2E-12 89.2 8.0 139 37-183 27-201 (352)
396 TIGR03771 anch_rpt_ABC anchore 98.7 1.2E-07 2.6E-12 81.5 9.5 137 37-181 9-183 (223)
397 cd03234 ABCG_White The White s 98.7 1.5E-07 3.2E-12 81.1 10.2 56 129-184 160-217 (226)
398 cd03248 ABCC_TAP TAP, the Tran 98.7 5.8E-08 1.3E-12 83.7 7.6 53 129-183 167-220 (226)
399 cd03300 ABC_PotA_N PotA is an 98.7 6.7E-08 1.4E-12 83.6 8.0 54 129-183 147-203 (232)
400 cd03297 ABC_ModC_molybdenum_tr 98.7 7.9E-08 1.7E-12 82.1 8.3 55 129-184 148-205 (214)
401 TIGR02142 modC_ABC molybdenum 98.7 7.5E-08 1.6E-12 88.5 8.7 139 37-183 26-204 (354)
402 PRK10851 sulfate/thiosulfate t 98.7 1.1E-07 2.3E-12 87.2 9.5 148 29-183 25-209 (353)
403 PRK11247 ssuB aliphatic sulfon 98.7 8.3E-08 1.8E-12 84.1 8.5 150 22-184 28-207 (257)
404 COG3845 ABC-type uncharacteriz 98.7 8.5E-08 1.8E-12 88.1 8.7 170 26-199 24-238 (501)
405 PRK15112 antimicrobial peptide 98.7 8.7E-08 1.9E-12 84.7 8.5 158 22-184 29-223 (267)
406 PRK08939 primosomal protein Dn 98.7 6.5E-08 1.4E-12 86.6 7.7 54 7-60 121-182 (306)
407 PRK11831 putative ABC transpor 98.7 7.6E-08 1.6E-12 85.2 8.1 54 129-183 160-216 (269)
408 COG1134 TagH ABC-type polysacc 98.7 1.1E-07 2.3E-12 80.1 8.4 136 37-183 56-219 (249)
409 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.7 4.4E-08 9.6E-13 85.1 6.3 53 129-183 156-209 (238)
410 COG3283 TyrR Transcriptional r 98.7 3.1E-06 6.6E-11 74.9 17.5 108 131-238 294-431 (511)
411 TIGR00972 3a0107s01c2 phosphat 98.7 1E-07 2.3E-12 83.2 8.6 55 129-184 161-216 (247)
412 COG1220 HslU ATP-dependent pro 98.6 1.1E-07 2.5E-12 83.0 8.4 106 130-235 250-403 (444)
413 PLN03210 Resistant to P. syrin 98.6 9.3E-07 2E-11 93.5 17.0 197 9-225 180-389 (1153)
414 PRK11174 cysteine/glutathione 98.6 5.5E-08 1.2E-12 95.9 7.4 124 37-172 379-546 (588)
415 PRK13546 teichoic acids export 98.6 9.1E-08 2E-12 84.2 8.0 55 129-184 160-216 (264)
416 TIGR03411 urea_trans_UrtD urea 98.6 1.6E-07 3.5E-12 81.8 9.5 55 129-184 160-215 (242)
417 cd03252 ABCC_Hemolysin The ABC 98.6 8E-08 1.7E-12 83.4 7.5 52 129-182 155-207 (237)
418 COG1117 PstB ABC-type phosphat 98.6 1.3E-07 2.8E-12 77.7 8.0 149 11-171 12-209 (253)
419 PRK11176 lipid transporter ATP 98.6 6.2E-08 1.3E-12 95.4 7.4 142 24-171 361-540 (582)
420 PRK10619 histidine/lysine/argi 98.6 1.2E-07 2.6E-12 83.4 8.4 56 129-185 169-226 (257)
421 TIGR01166 cbiO cobalt transpor 98.6 5.9E-08 1.3E-12 81.3 6.2 43 129-171 144-188 (190)
422 TIGR03005 ectoine_ehuA ectoine 98.6 9.6E-08 2.1E-12 83.7 7.8 55 129-184 163-220 (252)
423 KOG0736 Peroxisome assembly fa 98.6 2.1E-06 4.5E-11 82.8 16.8 150 36-223 433-596 (953)
424 TIGR01978 sufC FeS assembly AT 98.6 1E-07 2.2E-12 83.1 7.6 53 129-182 161-216 (243)
425 TIGR02770 nickel_nikD nickel i 98.6 1.4E-07 3.1E-12 81.4 8.3 55 129-184 142-199 (230)
426 PRK13640 cbiO cobalt transport 98.6 8.7E-08 1.9E-12 85.4 7.1 54 129-184 160-216 (282)
427 PRK13641 cbiO cobalt transport 98.6 1.2E-07 2.6E-12 84.7 8.0 160 22-185 23-219 (287)
428 TIGR02982 heterocyst_DevA ABC 98.6 1.2E-07 2.7E-12 81.3 7.8 54 129-184 158-214 (220)
429 PRK11300 livG leucine/isoleuci 98.6 1.4E-07 3.1E-12 82.8 8.4 55 129-184 170-227 (255)
430 TIGR02324 CP_lyasePhnL phospho 98.6 1.2E-07 2.5E-12 81.7 7.6 51 129-180 166-218 (224)
431 TIGR03415 ABC_choXWV_ATP choli 98.6 1.6E-07 3.4E-12 86.6 8.9 54 129-183 181-237 (382)
432 PRK15439 autoinducer 2 ABC tra 98.6 8.3E-08 1.8E-12 92.8 7.2 147 23-182 28-211 (510)
433 TIGR01187 potA spermidine/putr 98.6 1.1E-07 2.3E-12 86.5 7.5 55 129-184 117-174 (325)
434 TIGR02203 MsbA_lipidA lipid A 98.6 7.2E-08 1.6E-12 94.8 6.8 131 37-170 361-528 (571)
435 PRK13649 cbiO cobalt transport 98.6 1.2E-07 2.6E-12 84.4 7.6 54 129-183 162-217 (280)
436 PRK03695 vitamin B12-transport 98.6 1.1E-07 2.3E-12 83.2 7.0 54 130-184 151-206 (248)
437 COG0410 LivF ABC-type branched 98.6 5.9E-08 1.3E-12 80.8 5.0 155 16-182 13-208 (237)
438 PRK13657 cyclic beta-1,2-gluca 98.6 8.2E-08 1.8E-12 94.6 7.0 136 23-171 352-531 (588)
439 PRK13644 cbiO cobalt transport 98.6 1.3E-07 2.9E-12 83.8 7.6 156 24-184 20-208 (274)
440 TIGR03375 type_I_sec_LssB type 98.6 8.3E-08 1.8E-12 96.4 7.1 138 22-172 481-662 (694)
441 PRK13643 cbiO cobalt transport 98.6 1.8E-07 3.9E-12 83.6 8.4 158 22-183 22-216 (288)
442 PRK13642 cbiO cobalt transport 98.6 1.2E-07 2.7E-12 84.2 7.3 152 25-183 26-212 (277)
443 PRK13636 cbiO cobalt transport 98.6 1.3E-07 2.9E-12 84.2 7.5 152 21-184 21-215 (283)
444 cd03299 ABC_ModC_like Archeal 98.6 2E-07 4.4E-12 80.8 8.5 54 129-183 146-202 (235)
445 TIGR02769 nickel_nikE nickel i 98.6 1.7E-07 3.7E-12 82.8 8.1 48 23-73 28-75 (265)
446 cd03289 ABCC_CFTR2 The CFTR su 98.6 2E-07 4.4E-12 82.4 8.5 54 129-184 155-209 (275)
447 COG4133 CcmA ABC-type transpor 98.6 3E-07 6.4E-12 74.1 8.5 132 29-174 25-194 (209)
448 PRK14269 phosphate ABC transpo 98.6 2.6E-07 5.6E-12 80.7 9.1 55 129-184 159-214 (246)
449 PRK10790 putative multidrug tr 98.6 9.9E-08 2.2E-12 94.1 7.1 131 28-171 363-536 (592)
450 PRK10762 D-ribose transporter 98.6 1.5E-07 3.2E-12 90.9 8.1 156 23-182 21-212 (501)
451 PRK13695 putative NTPase; Prov 98.6 2.3E-06 5.1E-11 70.5 14.0 70 129-201 95-171 (174)
452 PRK10744 pstB phosphate transp 98.6 3.3E-07 7.1E-12 80.8 9.4 55 129-184 173-228 (260)
453 PRK13639 cbiO cobalt transport 98.6 1.8E-07 4E-12 83.0 7.7 55 129-184 154-210 (275)
454 TIGR02857 CydD thiol reductant 98.6 1.2E-07 2.7E-12 92.2 7.2 142 22-171 338-518 (529)
455 TIGR01846 type_I_sec_HlyB type 98.6 1.1E-07 2.5E-12 95.4 7.0 143 23-173 474-655 (694)
456 PRK15079 oligopeptide ABC tran 98.6 1.8E-07 4E-12 84.9 7.7 149 25-184 40-235 (331)
457 PRK14267 phosphate ABC transpo 98.6 3.4E-07 7.3E-12 80.3 9.1 55 129-184 166-221 (253)
458 PRK15056 manganese/iron transp 98.6 3.1E-07 6.7E-12 81.4 8.9 52 129-181 159-212 (272)
459 COG1119 ModF ABC-type molybden 98.6 6E-07 1.3E-11 75.6 9.9 52 129-180 188-243 (257)
460 PRK13634 cbiO cobalt transport 98.6 2.4E-07 5.3E-12 82.8 8.2 159 23-185 24-220 (290)
461 PRK14246 phosphate ABC transpo 98.5 1.2E-07 2.6E-12 83.2 6.1 55 129-184 170-225 (257)
462 TIGR01192 chvA glucan exporter 98.5 1.7E-07 3.6E-12 92.2 7.7 45 129-173 488-533 (585)
463 COG1484 DnaC DNA replication p 98.5 5E-07 1.1E-11 78.8 9.8 27 33-59 104-130 (254)
464 PRK13631 cbiO cobalt transport 98.5 2.4E-07 5.1E-12 83.9 8.0 55 129-184 193-249 (320)
465 PRK10419 nikE nickel transport 98.5 2.5E-07 5.4E-12 81.8 8.0 54 129-183 168-224 (268)
466 PRK13637 cbiO cobalt transport 98.5 2.7E-07 5.9E-12 82.4 8.2 159 22-184 23-218 (287)
467 PRK13547 hmuV hemin importer A 98.5 2.4E-07 5.3E-12 81.9 7.8 54 130-184 172-228 (272)
468 COG1135 AbcC ABC-type metal io 98.5 9E-07 2E-11 76.9 10.9 161 22-185 22-216 (339)
469 TIGR01193 bacteriocin_ABC ABC- 98.5 1.9E-07 4E-12 94.1 7.9 124 36-171 502-670 (708)
470 PRK14240 phosphate transporter 98.5 4.9E-07 1.1E-11 79.1 9.6 55 129-184 163-218 (250)
471 PRK14253 phosphate ABC transpo 98.5 4.4E-07 9.6E-12 79.4 9.3 55 129-184 162-217 (249)
472 PRK11160 cysteine/glutathione 98.5 2.4E-07 5.2E-12 90.9 8.3 138 22-173 356-537 (574)
473 KOG0058 Peptide exporter, ABC 98.5 1.1E-07 2.3E-12 91.4 5.6 51 21-74 483-533 (716)
474 PRK09544 znuC high-affinity zi 98.5 3.1E-07 6.6E-12 80.4 8.1 55 129-184 137-194 (251)
475 TIGR03796 NHPM_micro_ABC1 NHPM 98.5 1.3E-07 2.9E-12 95.2 6.6 136 22-172 495-674 (710)
476 PHA02774 E1; Provisional 98.5 2.7E-07 5.8E-12 87.4 8.0 118 21-189 420-555 (613)
477 PRK09984 phosphonate/organopho 98.5 3.4E-07 7.3E-12 80.8 8.3 54 129-183 169-225 (262)
478 cd03288 ABCC_SUR2 The SUR doma 98.5 6E-07 1.3E-11 78.9 9.9 52 129-182 173-225 (257)
479 PRK13645 cbiO cobalt transport 98.5 3.4E-07 7.3E-12 81.9 8.4 55 129-184 167-224 (289)
480 TIGR03797 NHPM_micro_ABC2 NHPM 98.5 1.8E-07 4E-12 93.8 7.3 136 22-172 469-647 (686)
481 PRK14256 phosphate ABC transpo 98.5 5E-07 1.1E-11 79.2 9.2 55 129-184 165-220 (252)
482 TIGR01257 rim_protein retinal- 98.5 2.9E-07 6.2E-12 99.9 8.9 135 37-184 1968-2143(2272)
483 PRK14259 phosphate ABC transpo 98.5 3.9E-07 8.4E-12 80.6 8.3 56 129-185 171-227 (269)
484 PRK14235 phosphate transporter 98.5 7.2E-07 1.6E-11 78.9 9.9 54 129-183 180-234 (267)
485 PRK09700 D-allose transporter 98.5 1.8E-07 3.8E-12 90.6 6.5 158 22-183 21-217 (510)
486 PRK14242 phosphate transporter 98.5 5.7E-07 1.2E-11 78.9 9.2 55 129-184 166-221 (253)
487 PRK15177 Vi polysaccharide exp 98.5 4.4E-07 9.5E-12 77.4 8.2 53 129-182 121-174 (213)
488 PRK10789 putative multidrug tr 98.5 2.2E-07 4.8E-12 91.1 7.2 142 23-172 332-512 (569)
489 PRK14270 phosphate ABC transpo 98.5 5.4E-07 1.2E-11 78.9 8.9 55 129-184 164-219 (251)
490 PRK14262 phosphate ABC transpo 98.5 6.1E-07 1.3E-11 78.6 9.3 54 129-183 163-217 (250)
491 PRK14261 phosphate ABC transpo 98.5 6.4E-07 1.4E-11 78.6 9.4 54 129-183 166-220 (253)
492 PRK14274 phosphate ABC transpo 98.5 6.2E-07 1.3E-11 79.0 9.3 55 129-184 172-227 (259)
493 PRK10938 putative molybdenum t 98.5 1.4E-07 3.1E-12 90.8 5.6 156 21-181 18-205 (490)
494 PRK14272 phosphate ABC transpo 98.5 6.4E-07 1.4E-11 78.5 9.3 55 129-184 165-220 (252)
495 PRK13633 cobalt transporter AT 98.5 3.5E-07 7.6E-12 81.4 7.7 157 21-184 25-217 (280)
496 TIGR02204 MsbA_rel ABC transpo 98.5 2.1E-07 4.5E-12 91.7 6.8 145 23-172 357-537 (576)
497 PRK14237 phosphate transporter 98.5 6E-07 1.3E-11 79.4 9.0 54 129-183 180-234 (267)
498 PF12775 AAA_7: P-loop contain 98.5 9.8E-07 2.1E-11 77.8 10.3 77 128-204 98-195 (272)
499 PLN03130 ABC transporter C fam 98.5 9.2E-08 2E-12 103.3 4.5 146 21-181 1254-1442(1622)
500 PRK13549 xylose transporter AT 98.5 2.6E-07 5.7E-12 89.3 7.2 158 21-182 20-214 (506)
No 1
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=5.6e-70 Score=452.53 Aligned_cols=349 Identities=58% Similarity=0.961 Sum_probs=336.8
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
|+|++||||++++.+.++++....++.....+.+||+++|||+|+||.|.+.++.+++++.+.....++.+.|. +|++
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~--tpS~ 78 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT--TPSK 78 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe--cCCC
Confidence 89999999999999999999999999998889999999999999999999999999999999999999999988 8888
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
++ +++.++++++|++++|++.|++++..+++++++++++.++..+++..+||++|.|+|.|+.++|.+|+++||+++.+
T Consensus 79 kk-lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 79 KK-LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred ce-EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 76 89999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~ 240 (354)
+++|++||..++++++|+|||..++.+.|+++++..+|..++.+||+.++.+.+..|++.|+||+|+|+..||.++.+..
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCC-CCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 018543 241 PFKDN-QAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAY 319 (354)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 319 (354)
+++.+ +.++.+||+..+.++++.+..++++..+.++|..+|+|+.+|+||..|+.++.+.+....+...+..+.++|++
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~~~d~~~k~~~~~~Aa~ 317 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLLKCDTQLKLEVIQHAAK 317 (351)
T ss_pred cccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 77766 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhhCCCChhHhHHHHHHHHHHHHHHHHhhh
Q 018543 320 YEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVAT 352 (354)
Q Consensus 320 ~~~~l~~~~~~~l~l~~~i~~~~~~~~~~~~~~ 352 (354)
|++||..|.+..+|||+|+|++|++|++|.-+.
T Consensus 318 yEhRl~lG~KaIfHLEaFVA~fM~iy~~~~~~~ 350 (351)
T KOG2035|consen 318 YEHRLRLGQKAIFHLEAFVAKFMCIYKKFLSST 350 (351)
T ss_pred HHHHHhhcchhhhhHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999986554
No 2
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-53 Score=345.08 Aligned_cols=309 Identities=26% Similarity=0.405 Sum_probs=267.1
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+|+|||||..+.|++|+++.+..|+-..++|.+||++|.||||+||||.+.++|++++++...
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~k----------------- 78 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYK----------------- 78 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhh-----------------
Confidence 699999999999999999999999999999999999999999999999999999999875421
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~ 161 (354)
..++++|+++.+..+ ++|..++.|++..-. + +.++.||||+||+|.|+..+|++|+++||-++..+
T Consensus 79 ----------e~vLELNASdeRGID--vVRn~IK~FAQ~kv~-l-p~grhKIiILDEADSMT~gAQQAlRRtMEiyS~tt 144 (333)
T KOG0991|consen 79 ----------EAVLELNASDERGID--VVRNKIKMFAQKKVT-L-PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTT 144 (333)
T ss_pred ----------hHhhhccCccccccH--HHHHHHHHHHHhhcc-C-CCCceeEEEeeccchhhhHHHHHHHHHHHHHcccc
Confidence 124788888876654 789999999986543 1 34678999999999999999999999999999999
Q ss_pred eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 018543 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241 (354)
Q Consensus 162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~ 241 (354)
+|.++||...++.++++|||.+++|..+++.++...|..+++.|++.++++.++.++..+.||||+|+|.||....+-.-
T Consensus 145 RFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~ 224 (333)
T KOG0991|consen 145 RFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGL 224 (333)
T ss_pred hhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988766555
Q ss_pred CCCCCC--CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Q 018543 242 FKDNQA--IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAA 318 (354)
Q Consensus 242 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~ 318 (354)
++.+.. +........+.+++....+ .++.++.+.+.+++..|++|.+|+..+++.... .+++.++.++++..+
T Consensus 225 Vn~enVfKv~d~PhP~~v~~ml~~~~~----~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~~~E~~rlE~ikeig 300 (333)
T KOG0991|consen 225 VNQENVFKVCDEPHPLLVKKMLQACLK----RNIDEALKILAELWKLGYSPEDIITTLFRVVKNMDVAESLRLEFIKEIG 300 (333)
T ss_pred cchhhhhhccCCCChHHHHHHHHHHHh----ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555441 1111112333444444443 789999999999999999999999998876654 456678899999999
Q ss_pred HHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 319 YYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 319 ~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
..+.|+..|.+.++|+..++++++..-
T Consensus 301 ~thmrI~eGv~s~LQl~glla~l~~~~ 327 (333)
T KOG0991|consen 301 LTHMRILEGVNSLLQLSGLLAKLCKVG 327 (333)
T ss_pred hHHhHHHhhHhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998754
No 3
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=3.7e-52 Score=376.06 Aligned_cols=310 Identities=25% Similarity=0.402 Sum_probs=264.7
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|+|||||++|+|++||+++++.|+.++..++.||++|+||||+||||+|+++|++++|+...
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~---------------- 64 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYK---------------- 64 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCc----------------
Confidence 5899999999999999999999999999999999999999999999999999999998764311
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..++++++++.... ..+++.++.++..... . ..++++|+||||+|.|+..+|++|+++||.++.+
T Consensus 65 -----------~~~~eln~sd~~~~--~~vr~~i~~~~~~~~~-~-~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~ 129 (319)
T PLN03025 65 -----------EAVLELNASDDRGI--DVVRNKIKMFAQKKVT-L-PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNT 129 (319)
T ss_pred -----------cceeeecccccccH--HHHHHHHHHHHhcccc-C-CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCC
Confidence 12456666554332 3577777776654321 1 1246799999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~ 240 (354)
++||++||..+++.++|+|||..++|++++.+++..+|..+++++|+.+++++++.++..++||+|.+++.||..+....
T Consensus 130 t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~ 209 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFG 209 (319)
T ss_pred ceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997665434
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWA 317 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~ 317 (354)
.++.+. .+......+.++++++.+.. +++.+++..+++++..|++|..|+..+...+.+ .+++..+..++.++
T Consensus 210 ~i~~~~v~~~~~~~~~~~i~~~i~~~~~----~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~~~~~~~~~~~~~~~ 285 (319)
T PLN03025 210 FVNQENVFKVCDQPHPLHVKNIVRNCLK----GKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREI 285 (319)
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 454433 22344456778888888776 788899999999999999999999999665544 45888899999999
Q ss_pred HHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 318 AYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 318 ~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
+++++||..|.++.+||++|++++|...
T Consensus 286 ~~~~~~~~~g~~~~~~l~a~~~~~~~~~ 313 (319)
T PLN03025 286 GFAHMRICDGVGSLLQLSGLLAKLCLVR 313 (319)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998863
No 4
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-52 Score=355.14 Aligned_cols=312 Identities=27% Similarity=0.421 Sum_probs=262.7
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+.|+|||||++|+|++||+++++.|++.+..+..||+|||||||||||++|+++|++++|++...-
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~-------------- 89 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPC-------------- 89 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCcccccc--------------
Confidence 469999999999999999999999999999888899999999999999999999999988653321
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC----CCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~ 156 (354)
...+.+.++..+.. .+++.++.++...... ......++|+||||+|.|+.++|++|+++||+
T Consensus 90 ------------rvl~lnaSderGis--vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~ 155 (346)
T KOG0989|consen 90 ------------RVLELNASDERGIS--VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED 155 (346)
T ss_pred ------------chhhhccccccccc--chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc
Confidence 12344555544332 4666666666543321 11345679999999999999999999999999
Q ss_pred ccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (354)
Q Consensus 157 ~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~ 236 (354)
++.+++||++||..++++.++.|||+.++|+++.++++...|+.|+.+||+.+++++++.|+..|+||+|+|+..||.++
T Consensus 156 ~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 156 FSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLS 235 (346)
T ss_pred cccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--hCCHHHHH
Q 018543 237 VQQYPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--RLDAEIKH 311 (354)
Q Consensus 237 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--~~~~~~~~ 311 (354)
..++.++... .+.....++.+.++++.... .+..+..+...+++..|++|..++.+++.-+.. ..++..+.
T Consensus 236 ~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S----~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~ 311 (346)
T KOG0989|consen 236 LLGKRITTSLVNEELAGVVPDEKLLDLLELALS----ADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKA 311 (346)
T ss_pred ccCcccchHHHHHHHhccCCHHHHHHHHHHHHc----cChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHH
Confidence 9888777332 22323445667777777766 455566677788999999999999999888877 45677889
Q ss_pred HHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 312 EVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
.+-......+.++..|.+.+++|-.|.......
T Consensus 312 ~~~~kl~~~~~~~~dg~~l~~~L~~L~~~~~ql 344 (346)
T KOG0989|consen 312 QISLKLFTRDKRLEDGEDLELALKDLLEAEKQL 344 (346)
T ss_pred HHHHHHHhccchhhcchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877654
No 5
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-45 Score=347.11 Aligned_cols=323 Identities=19% Similarity=0.222 Sum_probs=260.5
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|+|++||+++++.|++++..++.+| +||+||+|+||||+|+++|+.++|........ |+.|
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p--------Cg~C 76 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANP--------CNDC 76 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCccc--------CCCC
Confidence 48999999999999999999999999999999999 89999999999999999999999875322111 3444
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++++.... ....+|++++.+... + ..++++|+||||+|+|+.+++++|+++||+|+++
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~--~v~~iR~l~~~~~~~-p----~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRT--KVEDTRELLDNIPYA-P----TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccC--CHHHHHHHHHHHhhc-c----ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 44445556666777888765322 223578877665443 2 2467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.||++|+++.+++++|+|||..++|++++.+++..++.+++.++|+.++++++..|++.++||+|.|+++|+.++..+
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~ 229 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGN 229 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998766553
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------- 303 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------- 303 (354)
..++.++ .+.....++.++++++.+.. ++...+...+.+++..|.++..++.++...+.+
T Consensus 230 ~~It~~~V~~~lg~~~~~~i~~ll~al~~----~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 305 (509)
T PRK14958 230 GKVLIADVKTMLGTIEPLLLFDILEALAA----KAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIEN 305 (509)
T ss_pred CCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccc
Confidence 4556554 23345567889999999887 566677788889999999999888777665444
Q ss_pred ----------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 ----------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 ----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++++......+.+......|....++++.+|-.+.|++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 355 (509)
T PRK14958 306 DSEQLRQLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLA 355 (509)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence 1222222234445555567777888889999998888874
No 6
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.2e-45 Score=342.36 Aligned_cols=323 Identities=19% Similarity=0.242 Sum_probs=260.7
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|++++||+++++.|+.++++|+++| +||+||+|+||||+|+++++.++|........ |..|
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~p--------C~~C 74 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTP--------CDTC 74 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCC--------Cccc
Confidence 59999999999999999999999999999999999 89999999999999999999998865322111 3333
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++++.... ....+++.++.....+. .++++|+||||+|.|+.+++++|+++||+|+++
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~--gId~IRelie~~~~~P~-----~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNR--GIDDIRELIEQTKYKPS-----MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred HHHHHHhhcCCCeEEEecccccc--CHHHHHHHHHHHhhCcc-----cCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 33334444445555666544322 22357777765433222 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.||++|+++.+++++|+|||++++|.+++.+++..++.+++.++|+.++++++..|++.++||+|+++++|+.++...
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~ 227 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCK 227 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999776553
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh-------CCHHHH
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR-------LDAEIK 310 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~-------~~~~~~ 310 (354)
..++.+. .+......+.++++++.+.. ++...+...+.++ .++++..++..+...+... ......
T Consensus 228 ~~It~~~V~~~lg~~~~~~I~~li~ai~~----~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l 301 (535)
T PRK08451 228 NAITESKVADMLGLLDPSKLEDFFQAILN----QDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKDSEFSILLY 301 (535)
T ss_pred CCCCHHHHHHHhCCCCHHHHHHHHHHHHh----cCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcccccccHHHH
Confidence 3455443 22233345678888888876 5566677777766 4688999999888777632 233456
Q ss_pred HHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 311 HEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
.+.++.+......+..|.++++|++.++++++...
T Consensus 302 ~r~~riL~~~k~~l~~g~~~~i~l~~~~~~~~~~~ 336 (535)
T PRK08451 302 ERFFRILSSAKSLLKEGADDGFVLLLMLFKMKEAL 336 (535)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 77889999999999999999999999999998743
No 7
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.6e-45 Score=348.25 Aligned_cols=322 Identities=17% Similarity=0.244 Sum_probs=254.2
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|.+||||++|+|++||+++++.|++++.+++++| +||+||+|+||||+++.+++.++|....... .|..|
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~--------PCG~C 76 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQ--------PCGVC 76 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCC--------CCccc
Confidence 48899999999999999999999999999999999 8999999999999999999999886432110 13334
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.++++++..+.. ....++++++.... .+. .+++||+||||+|+|+..++|+|+++||+++.+
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~r--gVDdIReLIe~a~~-~P~----~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNR--GVDEMAALLERAVY-APV----DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred HHHHHHhcCCCceEEEecccccc--cHHHHHHHHHHHHh-ccc----cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 44444444455566777665322 22357777765443 222 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~ 239 (354)
++|||+||+.++++++|+|||+.++|++++.+++..+|++++.+||+.++++++..|++.++||+|+++++|+..... .
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~ 229 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997765443 3
Q ss_pred CCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543 240 YPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------- 303 (354)
Q Consensus 240 ~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~------------- 303 (354)
..++.+. .+...+ .+.++++++.++. ++..++...+.+++..+++...++.+|...+.+
T Consensus 230 ~~It~~~V~~~LG~~d-~~~i~~ll~aL~~----~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~ 304 (830)
T PRK07003 230 NEVTETAVSGMLGALD-QTYMVRLLDALAA----GDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLD 304 (830)
T ss_pred CCcCHHHHHHHhCCCC-HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 4455442 122333 3458888888887 667777788888888888877666655544433
Q ss_pred -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+.+...++.+..-...|....+.++.+|..+.|++.
T Consensus 305 ~~~e~~~~~~~a~~~s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~ 357 (830)
T PRK07003 305 EWPEAADLRRFAELLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLA 357 (830)
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhc
Confidence 2344445556777777777888888899999998888875
No 8
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.5e-45 Score=339.39 Aligned_cols=323 Identities=18% Similarity=0.256 Sum_probs=262.1
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
|-|++||||++|+|++||+++++.|++++..|+++| +||+||+|+||||+|+.+|+.++|........ |+.
T Consensus 1 ~~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~p--------Cg~ 72 (491)
T PRK14964 1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDP--------CGT 72 (491)
T ss_pred CChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCC--------ccc
Confidence 789999999999999999999999999999999998 99999999999999999999998865332111 344
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~ 159 (354)
|..|..+....+.+++++++.+.. ....++++++.+.. .|+ .++++|+||||+|+|+.+++++|+++||+|++
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~~--~vddIR~Iie~~~~-~P~----~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASNT--SVDDIKVILENSCY-LPI----SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccCC--CHHHHHHHHHHHHh-ccc----cCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 444456666677888888876432 22458888776544 343 46889999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~ 239 (354)
++.||++|+..+++.++|+|||+.++|++++.+++..++.+++.++|+.+++++++.|++.++||+|.++++|+.++.++
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~ 225 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYS 225 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred -CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h--------
Q 018543 240 -YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R-------- 304 (354)
Q Consensus 240 -~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~----~-------- 304 (354)
..++.+. .+......+.++++++.+.. ++..++...+.+++..+ +|..++.++...+.. +
T Consensus 226 ~~~It~e~V~~llg~~~~~~If~L~~aI~~----~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 300 (491)
T PRK14964 226 NNKISEKSVRDLLGCVDKHILEDLVEAILL----GDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFL 300 (491)
T ss_pred CCCCCHHHHHHHHccCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 3555444 22223345678999999998 66778888888888765 677777655543221 0
Q ss_pred --------------CCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 305 --------------LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 305 --------------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
++.....++.+.+.+....+....++++.+|-.+.|++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~ 353 (491)
T PRK14964 301 LGEDLITRIKSLKIGSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCY 353 (491)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh
Confidence 233344456677777788888888999999998888764
No 9
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.9e-45 Score=335.19 Aligned_cols=324 Identities=18% Similarity=0.190 Sum_probs=247.6
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|.+||||++|+|++||+++++.|+.++..++++| +||+||+|+||||+|+.+|+.+.|........ |..|
T Consensus 7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p--------Cg~C 78 (484)
T PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP--------CNEC 78 (484)
T ss_pred hhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc--------cCCC
Confidence 69999999999999999999999999999999999 99999999999999999999998865322111 3333
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+++++++..... ...++++.+.+.... ..++++|+||||+|+|+.+++++|+++||+++.+
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~g--Vd~IReL~e~l~~~p-----~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~ 151 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRG--IENIRELRDNVKFAP-----MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAH 151 (484)
T ss_pred cHHHHHHccCCccceeechhhccc--HHHHHHHHHHHHhhh-----hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCc
Confidence 333455555666777777643222 234677766554322 1457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~ 239 (354)
+.||++|+.+++++++|+|||+.++|.+++.+++..+|++++.++|+.++++++..|++.++||+|+|+++||.+... .
T Consensus 152 viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~ 231 (484)
T PRK14956 152 IVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTD 231 (484)
T ss_pred eEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875433 3
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h---------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R--------- 304 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~----~--------- 304 (354)
..++.+. .+...+..+.+.++++.+..++ ....+...+.+++..|.+|..++.++...+.+ .
T Consensus 232 ~~it~~~V~~~lg~~~~~~~~~l~~si~~~d---~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~ 308 (484)
T PRK14956 232 SKLTGVKIRKMIGYHGIEFLTSFIKSLIDPD---NHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESV 308 (484)
T ss_pred CCcCHHHHHHHhCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhc
Confidence 3444433 1122234456677777777532 23456677888899999999998877766544 1
Q ss_pred -CCHHHHH------------HHHHHH-------HHH-hhHhhCCCChhHhHHHHHHHHHH
Q 018543 305 -LDAEIKH------------EVCHWA-------AYY-EHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 305 -~~~~~~~------------~~~~~~-------~~~-~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
++++.+. .+..++ ... +.+++...++++.+|-.+++++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 309 NFPKEDLQKMKSDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE 368 (484)
T ss_pred cCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence 1111111 112111 111 34567788899999999988875
No 10
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-44 Score=344.36 Aligned_cols=324 Identities=16% Similarity=0.210 Sum_probs=255.4
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
|-|-+||||++|+|++||+++++.|++++.+|+++| +||+||+|+||||+|+++|+.++|....... . |..
T Consensus 1 ~al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~-p-------Cg~ 72 (584)
T PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTAT-P-------CGV 72 (584)
T ss_pred CcHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCC-c-------ccc
Confidence 446699999999999999999999999999999999 8999999999999999999999986422111 1 333
Q ss_pred ccccccccc--cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543 80 RNIDLELTT--LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (354)
Q Consensus 80 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~ 157 (354)
|..|..+.. ..+.++++++..... ....++++.+.+.. .+. .++++|+||||+|+|+.+++|+|+++||++
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~--gvd~iRel~~~~~~-~P~----~~~~KVvIIDEah~Lt~~A~NALLK~LEEp 145 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHG--GVDDTRELRDRAFY-APA----QSRYRIFIVDEAHMVTTAGFNALLKIVEEP 145 (584)
T ss_pred cHHHHHhhcccCCCceEEEecccccc--CHHHHHHHHHHHHh-hhh----cCCceEEEEECCCcCCHHHHHHHHHHHhcC
Confidence 333333322 223456677654322 22357776655433 332 467899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 018543 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (354)
Q Consensus 158 ~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~ 237 (354)
+.++.||++|+++++++++|+|||++++|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.++++|+.++.
T Consensus 146 p~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 146 PEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred CCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cC--CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------
Q 018543 238 QQ--YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------- 303 (354)
Q Consensus 238 ~~--~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------- 303 (354)
.. ..++.+. .+.....++.++++++.+.. ++...+...+.+++..+.+|..++..+..++..
T Consensus 226 ~~~~~~It~~~v~~llg~~~~~~i~~lv~al~~----~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~ 301 (584)
T PRK14952 226 GAADTHVTYQRALGLLGATDVALIDDAVDALAA----DDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDA 301 (584)
T ss_pred ccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchh
Confidence 53 3444433 23333456778888888876 566677788888888899998888776665443
Q ss_pred ---------------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 ---------------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 ---------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+...++++.+......++.+.++++.+|.++.+++.
T Consensus 302 ~~~~l~~~~~~~~~~l~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~ 362 (584)
T PRK14952 302 AARGVVDAPEDVLERMREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL 362 (584)
T ss_pred hhcccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence 1222334445666666777788888899999999999874
No 11
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.6e-44 Score=339.03 Aligned_cols=328 Identities=17% Similarity=0.239 Sum_probs=250.9
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcc-cccccccccccCCC
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGS 79 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~-~~~~~~~~~~~~~~ 79 (354)
.|.+||||++|+|++||+++++.|++++.+++++| +||+||+|+||||+++.+++.++|..... ...... -|+.
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~----PCG~ 80 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ----PCGQ 80 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC----CCcc
Confidence 48999999999999999999999999999999999 89999999999999999999999854210 000000 1333
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~ 159 (354)
|..|..+....+.+.+++++... .....++++++.+.... ..++++|+||||+|+|+.+++|+|+++||+++.
T Consensus 81 C~sC~~I~aG~hpDviEIdAas~--~gVDdIReLie~~~~~P-----~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~ 153 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAASN--RGVDEMAQLLDKAVYAP-----TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPE 153 (700)
T ss_pred cHHHHHHHcCCCCcceEeccccc--CCHHHHHHHHHHHHhch-----hcCCceEEEEEChHhcCHHHHHHHHHhhccCCC
Confidence 44444555556666777776532 22245788777654432 246789999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~ 239 (354)
++.|||+||++++++++|+|||+.++|++++.+++.++|++++.++|+.++++++..|++.++|++|+++++++.+...+
T Consensus 154 ~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~ 233 (700)
T PRK12323 154 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYS 233 (700)
T ss_pred CceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988654433
Q ss_pred -CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543 240 -YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------- 303 (354)
Q Consensus 240 -~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~------------- 303 (354)
..++.+. .+......+.+.++++.+.. ++.......+.++...++++..++.++...+.+
T Consensus 234 ~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~----~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~ 309 (700)
T PRK12323 234 AGNVSEEAVRGMLGAIDQSYLVRLLDALAA----EDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQD 309 (700)
T ss_pred cCCcCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhccc
Confidence 3343322 11111123456777777765 444455555555666777766555554433332
Q ss_pred -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
.++.+.....++.+......|....+.++.+|..+.|++..
T Consensus 310 ~~~~~~~~~~~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~ 363 (700)
T PRK12323 310 DWPEADDIRRLAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAF 363 (700)
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence 24445566677778888888888999999999999888753
No 12
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=1.4e-43 Score=322.04 Aligned_cols=309 Identities=32% Similarity=0.553 Sum_probs=261.6
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+|+|||||++|++++|+++++..+..+++.+..||++|+||||+|||++++++++++.++...
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~----------------- 68 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWR----------------- 68 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccc-----------------
Confidence 799999999999999999999999999999999999999999999999999999988654311
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~ 161 (354)
..+++++.++.... ..+++.+..+....+. ...++++|+|||+|.++.+.++.|+++++.++.++
T Consensus 69 ----------~~~i~~~~~~~~~~--~~~~~~i~~~~~~~~~---~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~ 133 (319)
T PRK00440 69 ----------ENFLELNASDERGI--DVIRNKIKEFARTAPV---GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNT 133 (319)
T ss_pred ----------cceEEeccccccch--HHHHHHHHHHHhcCCC---CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCC
Confidence 11234443332221 2345555555555443 22457899999999999999999999999998899
Q ss_pred eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 018543 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241 (354)
Q Consensus 162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~ 241 (354)
.+|++++...++.+++++||.+++|++++.+++..++.+++.++|+.+++++++.+++.++||+|.+++.|+.++..+..
T Consensus 134 ~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~ 213 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKE 213 (319)
T ss_pred eEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877666
Q ss_pred CCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 018543 242 FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWA 317 (354)
Q Consensus 242 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~ 317 (354)
++.+. .+.....+..++++++.+.. ++..+++..+++|+. .+++|..|+..+...+.. .++++.+.++++.+
T Consensus 214 it~~~v~~~~~~~~~~~i~~l~~~~~~----~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~ 289 (319)
T PRK00440 214 VTEEAVYKITGTARPEEIREMIELALN----GDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAI 289 (319)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66554 33444566788999998886 678889999999985 799999999888765544 68899999999999
Q ss_pred HHHhhHhhCCCChhHhHHHHHHHHHHHHH
Q 018543 318 AYYEHKMRRGNKAIFHLEAFVAKFMSIYK 346 (354)
Q Consensus 318 ~~~~~~l~~~~~~~l~l~~~i~~~~~~~~ 346 (354)
++++++++.|.++.+++|.|+++++.+-+
T Consensus 290 ~~~d~~~k~g~~~~~~le~~i~~~~~~~~ 318 (319)
T PRK00440 290 GEADFRITEGANERIQLEALLAKLALLGK 318 (319)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999987643
No 13
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=2.1e-43 Score=323.38 Aligned_cols=326 Identities=27% Similarity=0.441 Sum_probs=258.9
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC--cccccccccccccCC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAG 78 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~~~~~~~~~~~ 78 (354)
|+|++||||++|++++|++++++.|..++..+..||++|+||||+||||+++++++++.+... ..+.+++..+. ..
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~--~~ 80 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF--DQ 80 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh--hc
Confidence 799999999999999999999999999999999889999999999999999999999876541 11222222111 00
Q ss_pred CccccccccccccCceeeeCCCC--CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543 79 SRNIDLELTTLSSANHVELSPSD--AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~ 156 (354)
.. ......+.+..+.... .+......++++++......+. .+++++|||||+|.++.+.++.|++++++
T Consensus 81 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vlilDe~~~l~~~~~~~L~~~le~ 151 (337)
T PRK12402 81 GK-----KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL----SADYKTILLDNAEALREDAQQALRRIMEQ 151 (337)
T ss_pred ch-----hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC----CCCCcEEEEeCcccCCHHHHHHHHHHHHh
Confidence 00 0000000000000000 0011123455556555555443 35678999999999999999999999999
Q ss_pred ccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (354)
Q Consensus 157 ~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~ 236 (354)
++..+.+|++++.+.++.++++|||..+.|.|++.+++..++.+++.++|+.+++++++.+++.++||+|.+++.|+.++
T Consensus 152 ~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 152 YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA 231 (337)
T ss_pred ccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88889999999998999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCCCC--C-CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 018543 237 VQQYPFKDNQ--A-IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLKRLDAEIKHE 312 (354)
Q Consensus 237 ~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~il~~l~~~~~~~~~~~~~~~ 312 (354)
.....++.+. . +....++..++++++.+.. ++..+++..+++++ .+|++|..|+..+......+++...+.+
T Consensus 232 ~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~----~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~l~~ 307 (337)
T PRK12402 232 LAAGEITMEAAYEALGDVGTDEVIESLLDAAEA----GDFTDARKTLDDLLIDEGLSGGEVLEELLRVARSRYRGDNLAR 307 (337)
T ss_pred HcCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCHHHHHH
Confidence 6555666554 1 2223567899999999887 67788999999987 6899999999988776666799999999
Q ss_pred HHHHHHHHhhHhhCCCChhHhHHHHHHHH
Q 018543 313 VCHWAAYYEHKMRRGNKAIFHLEAFVAKF 341 (354)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~l~l~~~i~~~ 341 (354)
++.++++++.+++.|.++.+|||.|++++
T Consensus 308 ~~~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 308 LHRLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 99999999999999999999999999875
No 14
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.4e-44 Score=339.04 Aligned_cols=328 Identities=19% Similarity=0.257 Sum_probs=259.3
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|+|++||+++++.|++++..++.+| +||+||+|+||||+++++|+.++|....... +... .-|+.|
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~--~~~~-~pCg~C 81 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQG--GITA-TPCGVC 81 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccccc--CCCC-CCCCcc
Confidence 48999999999999999999999999999999999 8999999999999999999999986432100 0000 014444
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+++++++... .....++++++.+.. .+. .++++|+||||+|+|+.+++|+|+++||+++.+
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~--~~Vd~iReli~~~~~-~p~----~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~ 154 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASN--RGVDEVQQLLEQAVY-KPV----QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY 154 (618)
T ss_pred HHHHHHHcCCCCceeecCcccc--cCHHHHHHHHHHHHh-Ccc----cCCceEEEEEChhhCCHHHHHHHHHhcccCCCC
Confidence 4444555555556666665432 222357888766433 332 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.|||+|+++.+++++++|||..++|++++.+++..+|++++.++|+.++++++..|++.++||+|.++++++.+...+
T Consensus 155 ~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~ 234 (618)
T PRK14951 155 LKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGS 234 (618)
T ss_pred eEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998665443
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------- 303 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------- 303 (354)
..++.+. .+.....++.++++++.+.. ++...+...+.+++..|+++..++..+...+.+
T Consensus 235 ~~It~~~V~~~Lg~~~~~~i~~LldaL~~----~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 310 (618)
T PRK14951 235 GQLQEAAVRQMLGSVDRSHVFRLIDALAQ----GDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAA 310 (618)
T ss_pred CCcCHHHHHHHHcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 3444333 12233346788899999887 567778888888999999999998877655433
Q ss_pred -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+....+.+.+..-...+....++++.+|..+.|++.
T Consensus 311 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~ 363 (618)
T PRK14951 311 TDPEAAEVARLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLA 363 (618)
T ss_pred ChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 1233334456667777777788888899999999888875
No 15
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-43 Score=334.40 Aligned_cols=324 Identities=17% Similarity=0.233 Sum_probs=255.3
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|++++||+++++.|.++++.|+++| +||+||+|+||||+|+++|+.+.|........ |..|
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~p--------Cg~C 75 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTP--------CEVC 75 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCC--------CccC
Confidence 48899999999999999999999999999999999 89999999999999999999998864221111 3333
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++++.+.. ....+|+++......+ . .++++|+||||+|+|+..++++|+++||+++.+
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~--~VddIReli~~~~y~P-~----~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRT--KVEDTRELLDNVPYAP-T----QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred HHHHHHhcCCCCceEEecccccC--CHHHHHHHHHHHhhhh-h----cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 33334445555666777765432 2235777776544322 2 357899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.||++|+++.+++++++|||.+++|.+++.+++..+|.+++.++|+.++++++..|++.++||+|.|+++|+.+...+
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~ 228 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQ 228 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765443
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------- 303 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------- 303 (354)
..++.+. .+......+.++++++++.+ ++..++...+.++...+.++..++..+...+.+
T Consensus 229 g~IT~edV~~lLG~~d~e~IfdLldAI~k----~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~ 304 (702)
T PRK14960 229 GAVHHQDVKEMLGLIDRTIIYDLILAVHQ----NQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKY 304 (702)
T ss_pred CCcCHHHHHHHhccCCHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4455444 22223345578999999987 455566677777777788877665554433322
Q ss_pred -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
.++........+.+......|....++++.+|-.+.|++..
T Consensus 305 ~~~~~~~~~~la~~~s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~ 358 (702)
T PRK14960 305 SEEINAKILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAF 358 (702)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhC
Confidence 23444455677777778888888899999999999988753
No 16
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.4e-43 Score=333.69 Aligned_cols=320 Identities=20% Similarity=0.230 Sum_probs=268.4
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+| +||||++|+|++||+++++.|+.++.+++++| +||+||||+||||+|+++|+.+.|.+... . -|+.|
T Consensus 4 l~-~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~-~--------~cg~C 73 (504)
T PRK14963 4 LY-QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP-K--------PCGEC 73 (504)
T ss_pred HH-HhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCC-C--------CCCcC
Confidence 45 99999999999999999999999999999999 69999999999999999999998764321 0 13444
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+++++++.+. .....++++.+.+... ++ .++++||||||+|.++..++++|++.|++++.+
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~~--~~vd~iR~l~~~~~~~-p~----~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~ 146 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAASN--NSVEDVRDLREKVLLA-PL----RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEH 146 (504)
T ss_pred hhhHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhhc-cc----cCCCeEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 4445666667778888887532 2234577765554443 32 367899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~ 240 (354)
+.+|++++++.++.++++|||..++|.+++.+++..+|.+++.++|+.++++++..|++.++||+|++++.||.++..+.
T Consensus 147 t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~ 226 (504)
T PRK14963 147 VIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGT 226 (504)
T ss_pred EEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877655
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------h
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------R 304 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------~ 304 (354)
.++.+. .+....+++.++++++.+.. ++..++...+.+|+..|++|..|+..+.+++.. .
T Consensus 227 ~It~~~V~~~l~~~~~~~if~Li~al~~----~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~ 302 (504)
T PRK14963 227 PVTRKQVEEALGLPPQERLRGIAAALAQ----GDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLE 302 (504)
T ss_pred CCCHHHHHHHHCCCcHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 666555 44556678899999999987 677788899999999999999999999988872 2
Q ss_pred CCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 305 LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++..+...+..+.+.+.++..+.. +..+|..+.+++.
T Consensus 303 ~~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~l~~~~~ 340 (504)
T PRK14963 303 GAEPRLLAAMTALDEQMERFARRSD-ALSLELALLHALL 340 (504)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHh
Confidence 3556678899999999999988875 6778877777763
No 17
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.7e-43 Score=330.26 Aligned_cols=328 Identities=17% Similarity=0.208 Sum_probs=262.0
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.+|++||||++|+|++||+++++.|++.+..++.+| +||+||+|+||||+|+++|+.+.|.....- +..+. -|..
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~---~~~~~-~C~~ 84 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE---NTTIK-TCEQ 84 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccc---CcCcC-CCCC
Confidence 379999999999999999999999999999999987 999999999999999999999988642110 00000 1333
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~ 159 (354)
|..|..+....+.+.+++.+.... ....++++++.... .|+ .++++|+||||+|.|+..++++|+++||+++.
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~--~vd~Ir~iie~a~~-~P~----~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~ 157 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKT--SVDDIRRIIESAEY-KPL----QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP 157 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCC--CHHHHHHHHHHHHh-ccc----cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCC
Confidence 443445555566677777664322 22457887766543 333 46789999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~ 239 (354)
++.||++|+..++++++++|||+.++|++++.+++..++++++.++|+.+++++++.|++.++||+|.|+++|+.++...
T Consensus 158 ~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~ 237 (507)
T PRK06645 158 HIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMS 237 (507)
T ss_pred CEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999885542
Q ss_pred C----CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------
Q 018543 240 Y----PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------- 303 (354)
Q Consensus 240 ~----~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------- 303 (354)
. .++.+. .+.....++.++++++.+.. ++..++...+.+++..|.+|..++..+...+..
T Consensus 238 ~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~----~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~ 313 (507)
T PRK06645 238 AKSDNIISPQVINQMLGLVDSSVIIEFVEYIIH----RETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNY 313 (507)
T ss_pred ccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2 455444 33455567899999999998 678888899999999999999887655443321
Q ss_pred -----------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 -----------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 -----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.....++.+.+.+....+....++++.+|-.+.|++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~ 370 (507)
T PRK06645 314 SLPIYESFNDRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIY 370 (507)
T ss_pred ccccchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 1222334456667777777888888889888888888764
No 18
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.8e-43 Score=341.71 Aligned_cols=322 Identities=20% Similarity=0.268 Sum_probs=250.7
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|.+||||++|++++||+++++.|++++..++++| +||+||+|+||||+|+++|+.++|....... . |..|
T Consensus 5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~-p-------Cg~C 76 (944)
T PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT-P-------CGVC 76 (944)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC-C-------CCCc
Confidence 58999999999999999999999999999999999 7999999999999999999999886321100 0 3333
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++++... .....+|++++.+... +. .++++|+||||+|+|+.+++++|+++||+|+.+
T Consensus 77 ~sC~~i~~g~~~DviEidAas~--~kVDdIReLie~v~~~-P~----~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~ 149 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASR--TKVDDTRELLDNVQYR-PS----RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH 149 (944)
T ss_pred hHHHHHhcCCCceEEEeccccc--cCHHHHHHHHHHHHhh-hh----cCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence 3334444444555666765432 1223578877766433 22 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
++||++|+++.+++++|+|||++++|++++.+++..+|.+++..+++.++++++..|+..++|++|+|+++++.+...+
T Consensus 150 vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~ 229 (944)
T PRK14949 150 VKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGG 229 (944)
T ss_pred eEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998654332
Q ss_pred CCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543 240 YPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------- 303 (354)
Q Consensus 240 ~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~------------- 303 (354)
..++.+. .+...+ ...+..+++.+.. .+...+...+..++..|.++..|+..|...+.+
T Consensus 230 ~~It~~~V~~llG~iD-~~~V~~llksI~~----~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l 304 (944)
T PRK14949 230 GQVMLTQVQTMLGSID-EQHVIALLKALTD----ADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQ 304 (944)
T ss_pred CcccHHHHHHHhCCCC-HHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 2332222 011112 3345566666655 456667777778888888888887766655443
Q ss_pred ------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 ------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+....+++.+.....+|..+.+.++.||.++.++..
T Consensus 305 ~i~~e~i~~~a~~~s~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~ 356 (944)
T PRK14949 305 SLYSEQIRAFAEQLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVA 356 (944)
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 1223334456778888889999999999999999988875
No 19
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.9e-43 Score=339.63 Aligned_cols=322 Identities=18% Similarity=0.244 Sum_probs=261.1
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
|.+||||++|+|++||+++++.|++++++|+++| +||+||+|+||||+++++++.++|....... .|..|.
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~--------~c~~c~ 77 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE--------PCNVCP 77 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC--------CCCccH
Confidence 7799999999999999999999999999999999 8999999999999999999999886532111 144444
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~ 161 (354)
.|.++...++.+++++...... ....++++.+.+... |. .++++|+||||+|+|+.+++|+|+++||+|+.++
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~--~v~~ir~l~~~~~~~-p~----~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~ 150 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNT--GVDDIRELRENVKYL-PS----RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHV 150 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCcc--CHHHHHHHHHHHHhc-cc----cCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCe
Confidence 4556666677777777654321 223577777655433 32 4688999999999999999999999999999999
Q ss_pred eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Q 018543 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-Y 240 (354)
Q Consensus 162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~ 240 (354)
.||++|+++++++++|+|||+.++|++++.+++..+|..++.++|+.++++++..+++.++||+|.++++|+.+.... .
T Consensus 151 ~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~ 230 (576)
T PRK14965 151 KFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGD 230 (576)
T ss_pred EEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999776553 3
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------- 303 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------- 303 (354)
.++.++ .+........++++++.+.. ++...+...+.+++..|.++..++..+...+.+
T Consensus 231 ~It~edV~~llG~~~~~~l~~ll~al~~----~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~ 306 (576)
T PRK14965 231 AVGDDDVAELLGVVDRRLLLDISAAVFG----RDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLD 306 (576)
T ss_pred CCCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhcc
Confidence 444433 12222334567888888887 566777788888888899998887766554433
Q ss_pred --------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 --------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+....+++.+.+.+..|+.+.++++.+|.++.+++.
T Consensus 307 ~~~~~~~~~~~~A~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~ 360 (576)
T PRK14965 307 LSEAELAELRAQAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMAT 360 (576)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 2333445567888889999999999999999999999876
No 20
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.1e-43 Score=347.45 Aligned_cols=326 Identities=18% Similarity=0.225 Sum_probs=251.8
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
|.|.+||||++|++++||+++++.|++++..++++| |||+||+|+||||++++||+.|+|........ |..
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~p--------Cg~ 74 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTP--------CGE 74 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCC--------Ccc
Confidence 447799999999999999999999999999999999 99999999999999999999999864321111 333
Q ss_pred cccccccccc--ccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543 80 RNIDLELTTL--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (354)
Q Consensus 80 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~ 157 (354)
|..|..+... .+.++++++..... ....+|++.+.+.. .+. .+++||+||||+|+|+.+++|+|+++||++
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~-~p~----~~~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFF-APA----ESRYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHh-chh----cCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 3323333322 33455666543321 22356776554332 222 467899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 018543 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (354)
Q Consensus 158 ~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~ 237 (354)
+.++.|||+|++.++++++|+|||++++|.+++.+++..+|.+++.++|+.++++++..|++.++||+|.++++|+.++.
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia 227 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLA 227 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred cC--CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------
Q 018543 238 QQ--YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------- 303 (354)
Q Consensus 238 ~~--~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------- 303 (354)
.. ..++.+. .+........++++++.+.. ++...+...+.+++..+.++..++..+.+++.+
T Consensus 228 ~~~~~~IT~e~V~allg~~~~~~I~~lidAL~~----~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~ 303 (824)
T PRK07764 228 GAGPEGVTYERAVALLGVTDSALIDEAVDALAA----GDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDA 303 (824)
T ss_pred hcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 42 2344433 23334456678888888875 344556666777777788877666555544332
Q ss_pred ---------------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 304 ---------------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 304 ---------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
+++...+.++++.+.+....|+.+.++++.+|.++.+++.-.
T Consensus 304 ~~~~l~~~p~d~~~~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll~~ 366 (824)
T PRK07764 304 AERGLVDAPADQLDRMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLLPS 366 (824)
T ss_pred hhhhhccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhhc
Confidence 223333455677778888888888899999999999998643
No 21
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.8e-43 Score=328.16 Aligned_cols=328 Identities=19% Similarity=0.274 Sum_probs=263.5
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|+|++||+.+++.|+.+++.|+.+| +||+||+|+|||++|+++|+.++|.....-.-. |..|
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~-------c~~c 78 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP-------CNQC 78 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC-------Cccc
Confidence 47899999999999999999999999999999999 999999999999999999999988643210000 2222
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+++++.+... .....++++.+.+.... ..++++|+||||+|.|+.+++++|+++||+++.+
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~--~gid~ir~i~~~l~~~~-----~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASH--RGIEDIRQINETVLFTP-----SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred HHHHHHhcCCCCceEEeecccc--CCHHHHHHHHHHHHhhh-----hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 2223444444555666654322 11234565554433222 2367899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~ 239 (354)
+.+|++|++..++.++|+|||..++|++++.+++..+|..++.++|+.+++++++.|+..++||+|.|++.|+.++.. +
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~ 231 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFP 231 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987644 3
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH---------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL--------------- 302 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~--------------- 302 (354)
..++.+. .+.....++.++++++.+.. ++..++...+.+++..|.+|..++..+..++.
T Consensus 232 ~~It~~~V~~l~~~~~~~~vf~L~~ai~~----~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a 307 (451)
T PRK06305 232 KSLDPDSVAKALGLLSQDSLYTLDEAITT----QNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVA 307 (451)
T ss_pred CCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3344332 23334466788999988876 67778888889999999999988776654432
Q ss_pred HhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543 303 KRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG 347 (354)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~ 347 (354)
+.++.+...++++.+.+.+.+++.|.++.+.+|.|+.++...++.
T Consensus 308 ~~~s~~~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~~~~ 352 (451)
T PRK06305 308 TKYSSEQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRIYQR 352 (451)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcC
Confidence 246777788999999999999999999999999999999987653
No 22
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.6e-43 Score=320.81 Aligned_cols=323 Identities=18% Similarity=0.215 Sum_probs=252.6
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|+|++||+++++.|++++..++.+| ++|+||+|+||||+|+++|+.+.|........ |..|
T Consensus 5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~p--------c~~c 76 (363)
T PRK14961 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNP--------CRKC 76 (363)
T ss_pred HHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCCC
Confidence 48999999999999999999999999999999999 89999999999999999999998754221110 2222
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|.++....+.+.+++.+... .....++++++.+... + ..++++|+||||+|.++..++++|++.+|+++.+
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~--~~v~~ir~i~~~~~~~-p----~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~ 149 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASR--TKVEEMREILDNIYYS-P----SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH 149 (363)
T ss_pred HHHHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhcC-c----ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 2222333333444555544321 1223466666554332 2 2457799999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.||++|++.+++.++++|||..++|+|++.+++..+|.++++++|+.+++++++.+++.++||+|.|++.|+.++..+
T Consensus 150 ~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~ 229 (363)
T PRK14961 150 IKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGK 229 (363)
T ss_pred eEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------- 303 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------- 303 (354)
..++.+. .+.....+..++++++.+.. ++..++...+.+++..|.+|..++..+...+.+
T Consensus 230 ~~It~~~v~~~l~~~~~~~i~~l~~ai~~----~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~ 305 (363)
T PRK14961 230 GNINIKNVTDMLGLLNEKQSFLLTDALLK----KDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTI 305 (363)
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcc
Confidence 3444443 23344467788999999887 566777788888888899999888766655443
Q ss_pred --------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 --------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+....+++.+.+...+|..+.+.++.+|.++.++..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~ 359 (363)
T PRK14961 306 FIKNYKNQIQKIAQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAIN 359 (363)
T ss_pred cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHh
Confidence 1222334445777888888999999999999988887764
No 23
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.5e-43 Score=335.59 Aligned_cols=322 Identities=18% Similarity=0.235 Sum_probs=251.2
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|+|++||+++++.|++.+..|+++| +||+||+|+||||+|+.+|+.++|....... -|+.|
T Consensus 5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~--------pCg~C 76 (647)
T PRK07994 5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITAT--------PCGEC 76 (647)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCC--------CCCCC
Confidence 47899999999999999999999999999999999 8999999999999999999999886321100 14444
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++++... .....+|++++.+...+ . .++++|+||||+|+|+..++|+|+++||+|+.+
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~--~~VddiR~li~~~~~~p-~----~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR--TKVEDTRELLDNVQYAP-A----RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc--CCHHHHHHHHHHHHhhh-h----cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 4445555556666777766532 12245788776654432 2 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~ 239 (354)
++||++|+++++++++|+|||+.++|++++.+++..+|.+++.++++.++++++..|+..++|++|+|+++++.+... +
T Consensus 150 v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~ 229 (647)
T PRK07994 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGN 229 (647)
T ss_pred eEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999865544 3
Q ss_pred CCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543 240 YPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------- 303 (354)
Q Consensus 240 ~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~------------- 303 (354)
..++.+. .+...+ .+.++++++.+.. .+...+...+.+++..+.++..++..+...+.+
T Consensus 230 ~~it~~~v~~~lg~~d-~~~~~~ll~al~~----~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~ 304 (647)
T PRK07994 230 GQVTTDDVSAMLGTLD-DDQALSLLEALVE----GDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDN 304 (647)
T ss_pred CCcCHHHHHHHHccCC-HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcc
Confidence 3344322 111122 3456677777765 344556666667777787877666655444332
Q ss_pred --------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 --------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+.....++.+.+...+|..+.+.++.+|.++.|+..
T Consensus 305 ~~~d~~~~l~~la~~~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~ 358 (647)
T PRK07994 305 DMADIELRLRELARTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLA 358 (647)
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 2333334456778888889999999999999999988865
No 24
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.4e-43 Score=337.08 Aligned_cols=324 Identities=17% Similarity=0.260 Sum_probs=264.4
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|++++||+++++.|..+++.|+++| +|||||+|+||||+|+.+|+.+.|..... ++. .|+.|
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~---~~~----~Cg~C 78 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTA---DGE----ACNEC 78 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCC----CCCcc
Confidence 49999999999999999999999999999999999 99999999999999999999998865321 111 13444
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.++.++.+.+. .....++++++.+...+. .++++|+||||+|.|+.+++++|+++||+|+.+
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~--~~vd~Ir~li~~~~~~P~-----~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASN--NSVDDIRNLIEQVRIPPQ-----IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred hHHHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhhCcc-----cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 4444555555666677765432 223457777766544332 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~ 239 (354)
+.||++|+...++.++|+|||.+++|++++.+++..+|.+++.++|+.+++++++.|++.++||+|+|+++|+.++.. +
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~ 231 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTG 231 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987544 3
Q ss_pred CCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543 240 YPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------- 303 (354)
Q Consensus 240 ~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~------------- 303 (354)
..++.+. .+... ..+.+|++++.+.. ++..++...+++++..|++|..|+..+..++..
T Consensus 232 ~~It~~~V~~~l~~~-~~~~iF~L~dai~~----~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll 306 (614)
T PRK14971 232 GNITYKSVIENLNIL-DYDYYFRLTDALLA----GKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLL 306 (614)
T ss_pred CCccHHHHHHHhCCC-CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 3455432 22333 34667899999887 567788888999999999999888766654432
Q ss_pred ---------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 304 ---------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 304 ---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
.++.+.+..+++.+.+.+..++.|.+.++.+|.++.+++..
T Consensus 307 ~v~~~~~~~~~~qa~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~ 362 (614)
T PRK14971 307 EVGESIRQRYLEQAQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQL 362 (614)
T ss_pred cCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 23344556678889999999999999999999999998764
No 25
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.9e-43 Score=333.49 Aligned_cols=323 Identities=18% Similarity=0.246 Sum_probs=257.5
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|+|++||+++++.|++++..++++| +||+||+|+||||+|+++++.++|........ |..|
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~p--------Cg~C 76 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEP--------CGVC 76 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCC--------Cccc
Confidence 48899999999999999999999999999999999 89999999999999999999998875321111 2233
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+......+.++++..... ....++++++.... .+. .++++|+||||+|.|+..++++|+++||+++.+
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~--gVd~IRelle~a~~-~P~----~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNT--GIDNIREVLENAQY-APT----AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred HHHHHHhccCccceEEEeccccC--CHHHHHHHHHHHHh-hhh----hCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 33333334444455666654322 22357777765433 222 357899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.|||+|+++.+++++++|||..+.|++++.+++..+|++++.++|+.++++++..|++.++||+|.++++|+.+...+
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~ 229 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------- 303 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------- 303 (354)
..++.+. .+.....+..++++++.+.. ++...+...+.+++..|+++..++.++...+.+
T Consensus 230 g~It~e~V~~lLG~~d~~~If~LldAL~~----~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~ 305 (709)
T PRK08691 230 GKVAENDVRQMIGAVDKQYLYELLTGIIN----QDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHD 305 (709)
T ss_pred CCcCHHHHHHHHcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhcccc
Confidence 3455433 22223346789999999988 677788899999999999999888876655443
Q ss_pred ------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 ------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+......+.+......|....++++.+|..+.|+..
T Consensus 306 ~~~~~~~~~~a~~~~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~ 357 (709)
T PRK08691 306 DPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLA 357 (709)
T ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 2333444556777777777888888899999988888765
No 26
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.5e-43 Score=333.97 Aligned_cols=322 Identities=21% Similarity=0.297 Sum_probs=263.1
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
|.+||||++|++++||+++++.|++++..++++| +||+||+|+|||++|+.+|+.+.|........ |..|.
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~p--------C~~C~ 77 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEP--------CNECE 77 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCccH
Confidence 6699999999999999999999999999999999 99999999999999999999999876432111 33444
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~ 161 (354)
.|..+....+.+++++.+.... ....++++...+... |. .++++|+||||+|.|+.+++++|++++|+|+.++
T Consensus 78 ~C~~i~~g~~~dv~eidaas~~--~vd~ir~i~~~v~~~-p~----~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ 150 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAASNN--GVDEIRDIRDKVKYA-PS----EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHV 150 (559)
T ss_pred HHHHHhcCCCCCeEEeeccccC--CHHHHHHHHHHHhhC-cc----cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCe
Confidence 4445555666777787664322 223577777665433 32 5788999999999999999999999999999999
Q ss_pred eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Q 018543 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-Y 240 (354)
Q Consensus 162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~ 240 (354)
.||++|+.+++++++|+|||+.+.|++++.+++..+|..++.++|+.++++++..++..++||+|.|+++|+.+...+ .
T Consensus 151 ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~ 230 (559)
T PRK05563 151 IFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDG 230 (559)
T ss_pred EEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999775543 3
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------- 303 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------- 303 (354)
.++.++ .+......+.++++++.+.. ++...+...+.+++..|.++..++..+...+.+
T Consensus 231 ~It~~~V~~vlg~~~~~~i~~l~~al~~----~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~ 306 (559)
T PRK05563 231 KVTYEDALEVTGSVSQEALDDLVDAIVE----GDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDE 306 (559)
T ss_pred CCCHHHHHHHhCCCCHHHHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccc
Confidence 444333 22333456678888888887 566677788888888899998887766544332
Q ss_pred -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+.+.++++.+.+.+..++.+.++++.+|.++.+++.
T Consensus 307 ~~~~~~~~~~~a~~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~ 359 (559)
T PRK05563 307 STENDELFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCE 359 (559)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence 2344556778899999999999999999999999999887
No 27
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.8e-43 Score=333.27 Aligned_cols=328 Identities=18% Similarity=0.243 Sum_probs=263.7
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|+|++||+.+++.|.+++..|+++| +||+||+|+||||+|+++|+.++|....... +..+. -|..|
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~--~~~~~-~cg~c 89 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDG--GPTID-LCGVG 89 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccC--CCccc-cCccc
Confidence 48999999999999999999999999999999998 9999999999999999999999986532110 00000 03333
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+++++.+... .....+|++++.+.. .++ .++++||||||+|.|+.+++++|+++||+|+.+
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~--~gvd~IReIie~~~~-~P~----~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~ 162 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASH--TGVDDIREIIESVRY-RPV----SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH 162 (598)
T ss_pred HHHHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHHh-chh----cCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCC
Confidence 3334455556666777766532 223468888866543 333 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.|||+|+..++++++|+|||+.++|.+++.+++..||.+++.++|+.+++++++.|++.++||+|.++++|+.+...+
T Consensus 163 ~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~ 242 (598)
T PRK09111 163 VKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGA 242 (598)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998776553
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------- 303 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------- 303 (354)
..++.++ .+.....+..++++++.+.. ++...+...+.+++..|.+|..++..+.+.+..
T Consensus 243 g~It~e~V~~llg~~~~~~if~L~~ai~~----gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~ 318 (598)
T PRK09111 243 GEVTAEAVRDMLGLADRARVIDLFEALMR----GDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDP 318 (598)
T ss_pred CCcCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 3455443 23334456788899998887 567778888888888999999888777654432
Q ss_pred ---------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 ---------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 ---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++...+.++.+.+.+.+..++.+.++.+.+|.++.+++.
T Consensus 319 ~~~p~~~~kl~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~ 373 (598)
T PRK09111 319 SLSEAERTRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAY 373 (598)
T ss_pred cCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 1233446678888889999999999999999999999875
No 28
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-43 Score=326.83 Aligned_cols=323 Identities=21% Similarity=0.289 Sum_probs=257.4
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
...||||++|+|++||+++++.|++.+..+++.| |+|+||.|+||||+||.+|+.+.|........ |..|.
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP--------C~~C~ 77 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP--------CGKCI 77 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc--------chhhh
Confidence 4579999999999999999999999999999999 99999999999999999999999986421111 22222
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~ 161 (354)
.|.++...+..+.+++.+..... ...+|++.+.+.- .| ..+++||+||||+|+|+..+.|+|+|++|+||.++
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~g--VddiR~i~e~v~y-~P----~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV 150 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTG--VDDIREIIEKVNY-AP----SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHV 150 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccC--hHHHHHHHHHhcc-CC----ccccceEEEEecHHhhhHHHHHHHhcccccCccCe
Confidence 22344444445556665433222 2357887766443 33 36899999999999999999999999999999999
Q ss_pred eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Q 018543 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-Y 240 (354)
Q Consensus 162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~ 240 (354)
.|||+|+++.++++++.|||+.+.|+.++.+++...|..++.+|++.++++++..+++.++|++|+++++|+.+...+ .
T Consensus 151 ~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~ 230 (515)
T COG2812 151 KFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEG 230 (515)
T ss_pred EEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887664 3
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------- 303 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------- 303 (354)
.++.+. ..........+.+++..++. ++..++...+.+++..|.+|..++.++...+.+
T Consensus 231 ~It~~~v~~~lG~~~~~~~~~~~~~i~~----~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~ 306 (515)
T COG2812 231 EITLESVRDMLGLTDIEKLLSLLEAILK----GDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLN 306 (515)
T ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhcc
Confidence 455544 12223344667788888887 677788888889999999999998877766543
Q ss_pred -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
.++......+.+.+......+..+.++++.+|.++.++...
T Consensus 307 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~ 360 (515)
T COG2812 307 TTEIEERTKELASQISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEA 360 (515)
T ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhh
Confidence 01111233356667777777888888999999988888754
No 29
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.4e-42 Score=323.76 Aligned_cols=324 Identities=19% Similarity=0.245 Sum_probs=252.1
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|++++||+++++.|.++++.++.+| +||+||+|+||||+|+.+|+.+.|........ |..|
T Consensus 5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~p--------Cg~C 76 (546)
T PRK14957 5 ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEP--------CNKC 76 (546)
T ss_pred hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC--------Cccc
Confidence 58999999999999999999999999999999999 89999999999999999999998854321100 2233
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.++++.... .....++++++.+...+. .++++|+||||+|.|+.+++++|+++||+++.+
T Consensus 77 ~sC~~i~~~~~~dlieidaas~--~gvd~ir~ii~~~~~~p~-----~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR--TGVEETKEILDNIQYMPS-----QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc--cCHHHHHHHHHHHHhhhh-----cCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 3333444444556666654221 122346777766554332 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~ 239 (354)
+.||++|++..+++++|+|||..++|.+++.+++..+|.+++.++|+.++++++..|++.++||+|.|+++|+.++.. +
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~ 229 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCG 229 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987654 3
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH-----------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE----------------- 300 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~----------------- 300 (354)
..++.+. .+......+.++++++.+.+ ++...+...+.++...+.+...++..+...
T Consensus 230 ~~It~~~V~~~l~~~~~~~v~~ll~Al~~----~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~ 305 (546)
T PRK14957 230 GELKQAQIKQMLGIIDSEEVYSIINAIID----NDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVN 305 (546)
T ss_pred CCCCHHHHHHHHccCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 3344322 11122235568888888876 445555566666666677777666555411
Q ss_pred ---------HHHhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 301 ---------LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 301 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
+...++.+....+++.+.....+|..+.+.++.+|-.+.|+...
T Consensus 306 ~~~~~~i~~~a~~~s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~ 358 (546)
T PRK14957 306 DIDVDIINNILAKISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAF 358 (546)
T ss_pred hhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 11234555566678889999999999999999999999888754
No 30
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.2e-42 Score=317.80 Aligned_cols=331 Identities=17% Similarity=0.219 Sum_probs=259.4
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccc-ccccccccccCCCc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKV-KVENKTWKIDAGSR 80 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~~~~~~~~~~~~~ 80 (354)
.++||||++|++++||+.+++.|++++++|+.+| +||+||||+||||+|+++|+.+.|.....- ..... ....|+.|
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~-~~~~c~~c 84 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE-VTEPCGEC 84 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc-CCCCCCCC
Confidence 4789999999999999999999999999999999 999999999999999999999998632110 00000 00013444
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+..++.+... .....++++.+.+... |+ .++++|+||||+|.|+..+++.|++++|++++.
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~~--~~id~Ir~l~~~~~~~-p~----~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~ 157 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAASN--NSVDDIRLLRENVRYG-PQ----KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH 157 (397)
T ss_pred HHHHHHhcCCCCCeEeeccccc--CCHHHHHHHHHHHhhc-hh----cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC
Confidence 4444555555556666654322 1123566666555433 32 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.||+++++..++.++++|||.+++|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.|+.+....
T Consensus 158 t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~ 237 (397)
T PRK14955 158 AIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSV 237 (397)
T ss_pred eEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred -----CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------
Q 018543 240 -----YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------- 303 (354)
Q Consensus 240 -----~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------- 303 (354)
..++.+. .+.....++.++++++.+.. ++..++...+.+++..+.+|..++..+..++..
T Consensus 238 ~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~----~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~ 313 (397)
T PRK14955 238 ESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVAD----GDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRS 313 (397)
T ss_pred ccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 2344432 23344567788999999887 677778788888888899998877655444322
Q ss_pred -------------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 304 -------------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 304 -------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
+++.+.....++.+.+++..++.+.++.+.+|.|+.++...-
T Consensus 314 ~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~ 374 (397)
T PRK14955 314 TRLVERPDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIG 374 (397)
T ss_pred cccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhC
Confidence 344445566788899999999999999999999999877643
No 31
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9e-42 Score=326.61 Aligned_cols=329 Identities=16% Similarity=0.226 Sum_probs=259.6
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcc-cccccccccccCCCcc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGSRN 81 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~ 81 (354)
.+||||++|++++||+++++.|++++.+|+.+| +||+||+|+||||+|+.+|+.++|..... .... ....--|+.|.
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~-~~~~~~Cg~C~ 85 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL-QEVTEPCGECE 85 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc-cccCCCCccCH
Confidence 689999999999999999999999999999999 99999999999999999999999964211 0000 00000144444
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~ 161 (354)
.|..+....+.++.++.+... .....++++.+.+... |+ .++++|+||||+|.|+.+++++|+++||+|+.++
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~--~~vd~Ir~l~e~~~~~-P~----~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~t 158 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASN--NSVDDIRQLRENVRYG-PQ----KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHA 158 (620)
T ss_pred HHHHHhccCCCCeEEeccccc--CCHHHHHHHHHHHHhh-hh----cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCe
Confidence 444555555556555644221 1223577776665433 32 4678999999999999999999999999999999
Q ss_pred eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--
Q 018543 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-- 239 (354)
Q Consensus 162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-- 239 (354)
.||++|++..++.++|+|||++++|.+++.+++..+|.+++.++|+.+++++++.|++.++||+|.++++|+.++...
T Consensus 159 v~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~ 238 (620)
T PRK14954 159 IFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVG 238 (620)
T ss_pred EEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876653
Q ss_pred ----CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------
Q 018543 240 ----YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------- 303 (354)
Q Consensus 240 ----~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------- 303 (354)
..++.+. .+.....++.++++++.+.. ++..++...+.+++..+.+|..|+..+.+++..
T Consensus 239 ~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~----~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~ 314 (620)
T PRK14954 239 SEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAE----NDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRST 314 (620)
T ss_pred cccCCccCHHHHHHHHcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2344322 23334456788999999887 667778888889999999999888766655433
Q ss_pred ------------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 304 ------------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 304 ------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
+++...+.+.++.+.+++.+++.+.+..+.+|.++.++...
T Consensus 315 ~l~~~~~~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~ 373 (620)
T PRK14954 315 RLIERPESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIEL 373 (620)
T ss_pred ccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Confidence 12233345568888999999999999999999999998764
No 32
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.3e-42 Score=324.29 Aligned_cols=323 Identities=18% Similarity=0.265 Sum_probs=252.5
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|+|++||+++++.|.+++..++++| +||+||+|+||||+|+.+|+.++|....... . |+.|
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~-p-------cg~C 76 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTAT-P-------CGVC 76 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C-------CCCC
Confidence 47899999999999999999999999999999999 8999999999999999999999886422111 0 3333
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++.+... .....++++++.+.. .+. .++++|+||||+|.|+.+++|+|+++||+++.+
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~--~~vd~ir~l~~~~~~-~p~----~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASN--TQVDAMRELLDNAQY-APT----RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred HHHHHHhcCCCCceeEeecccc--CCHHHHHHHHHHHhh-Ccc----cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 3333444444555666654322 223457777766433 332 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.||++|+++++++++|+|||+.++|++++.+++..+|.+++.++|+.++++++..|++.++||+|+|+++++.+...+
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~ 229 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGG 229 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999776553
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------- 303 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------- 303 (354)
..++.+. .+.....++.++++++.+.. ++...+...+.++...+.++..++..+...+.+
T Consensus 230 ~~I~~~~v~~~~~~~~~~~i~~ll~al~~----~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~ 305 (527)
T PRK14969 230 GTVNESEVRAMLGAIDQDYLFALLEALLA----QDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADD 305 (527)
T ss_pred CCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCccccccc
Confidence 3444332 11122235568888888876 445566677777777788877777655443332
Q ss_pred ------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 ------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
+++++....+++.+.+....+....++++.+|..+.|+..
T Consensus 306 ~~~~~~~~~~a~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~ 357 (527)
T PRK14969 306 LPERDRLLDLAKRLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLA 357 (527)
T ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Confidence 3344445556777888888888899999999999988874
No 33
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9e-42 Score=327.37 Aligned_cols=320 Identities=21% Similarity=0.295 Sum_probs=252.0
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|.+||||++|++++||+.+++.|+.+++.++++| +||+||+|+|||++|+++|+.+.|...... +..|
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~----------~~pC 76 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL----------LEPC 76 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC----------CCch
Confidence 69999999999999999999999999999999999 899999999999999999999988653211 1112
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..|. ..+.+++++.+.. ......+|++++.+...+. .++++|+||||+|.|+.+++++|+++||+|+.+
T Consensus 77 ~~C~~~~-~~~~Dvieidaas--n~~vd~IReLie~~~~~P~-----~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~ 148 (725)
T PRK07133 77 QECIENV-NNSLDIIEMDAAS--NNGVDEIRELIENVKNLPT-----QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKH 148 (725)
T ss_pred hHHHHhh-cCCCcEEEEeccc--cCCHHHHHHHHHHHHhchh-----cCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCc
Confidence 1111221 1233445554321 1223458888876655432 478899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.||++|+++++++++|+|||++++|.+++.+++..+|..++.++|+.++++++..++..++|++|.|+++++.++..+
T Consensus 149 tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~ 228 (725)
T PRK07133 149 VIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGN 228 (725)
T ss_pred eEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------- 303 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------- 303 (354)
..++.+. .+......+.++++++.+.. ++...+...+.+++..|.+|..++..+...+.+
T Consensus 229 ~~It~e~V~ellg~~~~e~If~Ll~aI~~----kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~ 304 (725)
T PRK07133 229 NKITLKNVEELFGLVSNENLINLLNLLYS----KDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLE 304 (725)
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhc
Confidence 2233322 12222344567788888776 566677788888888999999887766554433
Q ss_pred ----------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 ----------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 ----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
..+......+++.+.+...++..+.+.++.+|.++.++..
T Consensus 305 ~~d~~~l~~~~~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~ 354 (725)
T PRK07133 305 YYSEEDLEKLKIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLA 354 (725)
T ss_pred cCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 0122233456788889999999999999999999988875
No 34
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.9e-41 Score=316.94 Aligned_cols=323 Identities=19% Similarity=0.254 Sum_probs=254.4
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
-|.+||||++|+|++||+++++.|+.++.+++++| +||+||||+||||+|+++|+.+.|........ |..|
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p--------c~~c 74 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP--------CNEC 74 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC--------Cccc
Confidence 38899999999999999999999999999999998 89999999999999999999998754321111 2223
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++++..... ...++++..... ..+. .++++|+||||+|.|+.+++++|++.+++++++
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~g--id~iR~i~~~~~-~~p~----~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRG--IDEIRKIRDAVG-YRPM----EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCC--HHHHHHHHHHHh-hChh----cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 233344444555667777643222 124666554433 3332 357799999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.+|++|+++.++.++++|||.++.|++++.+++..+++.++..+|+.+++++++.|++.++||+|.+++.|+.++...
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~ 227 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE 227 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 9999999998999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC--CH-HHHHHHH
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL--DA-EIKHEVC 314 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~--~~-~~~~~~~ 314 (354)
..++.+. .+.....++.++++++++.. ++...+...+.+++..|++|..|+..+.......+ .+ .....++
T Consensus 228 ~~It~e~V~~~l~~~~~~~i~~li~si~~----~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~ 303 (472)
T PRK14962 228 GKITLETVHEALGLIPIEVVRDYINAIFN----GDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVS 303 (472)
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHH
Confidence 3455444 22233355788899988887 67788999999999999999999999888777632 22 4455677
Q ss_pred HHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 315 HWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 315 ~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
..+.....++..-...++..+-.+.+++.
T Consensus 304 ~~~~~~~~~i~~~e~~~~l~~~~~~~~~~ 332 (472)
T PRK14962 304 RQLLNILREIKFAEEKRLVCKLGSASIAT 332 (472)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 77777777777766666655555555554
No 35
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.9e-42 Score=323.88 Aligned_cols=283 Identities=19% Similarity=0.267 Sum_probs=232.4
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+||||+|+.+|+.+.|........ |..|
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~--------Cg~C 76 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC--------CNSC 76 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------Cccc
Confidence 69999999999999999999999999999999998 99999999999999999999999876432211 3444
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++.+... .....+|++++.+...+ . .++++|+||||+|.|+.+++++|+++||+|+.+
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~--igVd~IReIi~~~~~~P-~----~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~ 149 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASN--NGVDEIRNIIDNINYLP-T----TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKH 149 (605)
T ss_pred HHHHHHHcCCCCceEEeccccc--cCHHHHHHHHHHHHhch-h----hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCc
Confidence 4444555566677777765432 22235788776655433 2 356899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~ 240 (354)
+.+|++|+.++++.++++|||++++|++++.+++..+|..++.++|+.+++++++.+++.++||+|.|++.|+.++....
T Consensus 150 tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~ 229 (605)
T PRK05896 150 VVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKN 229 (605)
T ss_pred EEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766543
Q ss_pred -CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 018543 241 -PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK 303 (354)
Q Consensus 241 -~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~ 303 (354)
.++.+. .+........++++++++.. ++...+...+.+++..|.+|..++..+...+.+
T Consensus 230 ~~It~e~V~ellg~~~~~~Vf~Ll~AI~~----kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RD 291 (605)
T PRK05896 230 SEIDIEDINKTFGLVDNNKKINLIELIQK----NDIEELRNLINELESKGINFEAFCRDLINLLID 291 (605)
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 244322 11122233557888888876 567788888999999999999999888877765
No 36
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7e-41 Score=319.02 Aligned_cols=322 Identities=18% Similarity=0.217 Sum_probs=255.5
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
|.+||||++|+|++||+++++.|+.++++|+++| +||+||+|+||||+|+++|+.+.|........ |..|.
T Consensus 6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~p--------C~~C~ 77 (563)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMP--------CGECS 77 (563)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCC--------Cccch
Confidence 6789999999999999999999999999999999 99999999999999999999998864321111 22333
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~ 161 (354)
.|..+....+.+.+++.+.. ......++++.+.+.. .|. .++++|+||||+|.|+..++++|++++|+|+.++
T Consensus 78 ~C~~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~~-~p~----~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~ 150 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIMF-PPA----SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYI 150 (563)
T ss_pred HHHHHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHHh-chh----cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCE
Confidence 23344444445555554322 1122346665554433 332 4678999999999999999999999999999999
Q ss_pred eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Q 018543 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-Y 240 (354)
Q Consensus 162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~ 240 (354)
.||++|+++.++.++|+|||+.++|.+++.+++..+|.+++.++|+.++++++..|++.++||+|.|+++|+.++... .
T Consensus 151 vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~ 230 (563)
T PRK06647 151 VFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDS 230 (563)
T ss_pred EEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999776543 3
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------- 303 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------- 303 (354)
.++.+. .+.....+..++++++.+.. ++..++...+.+++..|.+|..++..+...+..
T Consensus 231 ~It~e~V~~llg~~~~~~if~LidaI~~----~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~ 306 (563)
T PRK06647 231 DITLEQIRSKMGLTGDEFLEKLASSILN----EDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIG 306 (563)
T ss_pred CCCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 344332 12223345678888888887 677788888888988999999888766655433
Q ss_pred -----------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 -----------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 -----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+...++++.+.+.+..++.+.++.+.+|.++.+++.
T Consensus 307 ~~~e~l~k~~~~~s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~ 357 (563)
T PRK06647 307 IKAERLPEKLREFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILR 357 (563)
T ss_pred ccHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 1333445567888889999999999999999999999775
No 37
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-40 Score=313.22 Aligned_cols=322 Identities=21% Similarity=0.240 Sum_probs=254.9
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+|++||||++|++++||+++++.|+++++.++++| +||+||+|+||||+|+.+|+.+.|....... . |..|
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~-p-------c~~c 76 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGE-P-------CGKC 76 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCC-C-------CCcc
Confidence 79999999999999999999999999999999999 8999999999999999999999875322111 0 2222
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+...++.+.+++.+.... ....++++.+.+. ..|. .++++|+||||+|.|+.+++++|++++|+++.+
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~--gvd~ir~I~~~~~-~~P~----~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNR--GIDDIRALRDAVS-YTPI----KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCC--CHHHHHHHHHHHH-hCcc----cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 22223444445566666543221 2234666655443 3343 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.+|++|++.++++++++|||+.+.|++++.+++..||.+++.++|+.+++++++.+++.++||+|.|+++|+.++..+
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~ 229 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGE 229 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876553
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----h--------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----R-------- 304 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-----~-------- 304 (354)
..++.+. .+.....+..++++++.+.. ++...+...+.+++..|.+|..++..+..++.. .
T Consensus 230 ~~It~~~V~~~lg~~~~~~vf~Li~ai~~----~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~ 305 (486)
T PRK14953 230 GKVTIKVVEEFLGIVSQESVRKFLNLLLE----SDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVF 305 (486)
T ss_pred CCcCHHHHHHHhCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhc
Confidence 2343333 22334456678899999887 567778888889999999999998877776554 1
Q ss_pred ----------CCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 305 ----------LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 305 ----------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
++.+....+.+.+.+...+|.. .+..+.+|.++.+++.
T Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~ 353 (486)
T PRK14953 306 QVEDFYRKLEKPLEALLYLEDVINKAFSEART-RDPLRAYELAILKLLY 353 (486)
T ss_pred chHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHh
Confidence 0112234457778888888999 8999999998888864
No 38
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.8e-41 Score=317.10 Aligned_cols=323 Identities=17% Similarity=0.239 Sum_probs=247.4
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++||||++|+|++||+++++.|++++++++.+| +||+||+|+||||+|+.+|+.++|....... . |..|
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-p-------Cg~C 76 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-P-------CNTC 76 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-C-------Cccc
Confidence 69999999999999999999999999999999877 9999999999999999999999885422111 0 3334
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++++.... ....++++.+.+... +. .++++||||||+|.|+.+++++|+++||+++.+
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~~--~Id~iR~L~~~~~~~-p~----~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~ 149 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASNR--GIDDAKRLKEAIGYA-PM----EGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR 149 (624)
T ss_pred HHHHHHhcCCCCceEEEeccccc--CHHHHHHHHHHHHhh-hh----cCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence 33345555566667777653221 223466655544432 22 467799999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.||++|++++++.++|+|||++++|++++.+++..+|..++.++++.+++++++.|++.++||+|+|+++|+.+...+
T Consensus 150 ~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~ 229 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGE 229 (624)
T ss_pred EEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765333
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------- 303 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------- 303 (354)
..++.+. .+......+.++++++.+.. .+...+...+.+++..+.++..++..+...+.+
T Consensus 230 ~~It~d~V~~~lg~~~~e~vfeLl~AL~~----~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~ 305 (624)
T PRK14959 230 SRLTIDGARGVLGLAGQELFLRLMEALAA----QDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALAS 305 (624)
T ss_pred CCcCHHHHHHHhCCCCHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhh
Confidence 3344332 12222234567788888765 455566677777777788887766655544333
Q ss_pred ----------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 ----------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 ----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
+++.......++.+.+...++..+.+.++.+|.++.++..
T Consensus 306 l~i~~~~~~~~~~~A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~ 361 (624)
T PRK14959 306 LDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAM 361 (624)
T ss_pred cccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 1222223345667777888888899999999998888653
No 39
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.5e-40 Score=318.53 Aligned_cols=325 Identities=20% Similarity=0.263 Sum_probs=252.0
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+|.+||||++|++++||+++++.|+.++..++.+| +||+||+|+||||+|+++|+.++|......... .|+.|
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~------~Cg~C 78 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE------PCGKC 78 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC------CCccc
Confidence 68999999999999999999999999999998876 999999999999999999999998643211000 13334
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+++++.+.. ......+|++++.... .++ .++++|+||||+|.|+.+++++|+++||+++.+
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~--~~~vd~IReii~~a~~-~p~----~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAAS--NTGVDNIRELIERAQF-APV----QARWKVYVIDECHMLSTAAFNALLKTLEEPPPR 151 (620)
T ss_pred HHHHHHhcCCCccEEEEeccc--cCCHHHHHHHHHHHhh-Chh----cCCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence 333444455556666665542 1222467888865443 332 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~ 240 (354)
+.||++|+++.++.++|+|||+.++|.+++.+++..+|.+++.++|+.++++++..+++.++||+|+|+++|+.++....
T Consensus 152 tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~ 231 (620)
T PRK14948 152 VVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPG 231 (620)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876655
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------- 303 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------- 303 (354)
.++.+. .+.....+..++++++.+.. ++...+...+.+++..+.+|..++..+...+.+
T Consensus 232 ~It~e~V~~lvg~~~e~~i~~Ll~ai~~----~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~ 307 (620)
T PRK14948 232 PITPEAVWDLLGAVPEQDLLNLLKALAS----NDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVA 307 (620)
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 554433 12222335567788888775 344555566666777777777666544443322
Q ss_pred --------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 --------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++......+++.+.+++..++.+.+..+-+|.++.++..
T Consensus 308 i~~d~~~~l~~~A~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~ 361 (620)
T PRK14948 308 VSQQTWDELCKLAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLP 361 (620)
T ss_pred cCHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhc
Confidence 2333344556777888888999999999999999988765
No 40
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=2.9e-40 Score=304.62 Aligned_cols=322 Identities=23% Similarity=0.310 Sum_probs=253.7
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+|+|||||++|++++||+++++.|..++.+|+.+| +||+||||+|||++++.+++.+.|+....... |..|
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~--------c~~c 74 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEP--------CNEC 74 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCCC
Confidence 79999999999999999999999999999999998 99999999999999999999998874321111 2223
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++++.+. .....+++++..+.. .+. .++++||||||+|.++.++++.|++.+|+++.+
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~p~----~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASN--NGVDDIREILDNVKY-APS----SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred HHHHHHhcCCCCCEEEeecccc--CCHHHHHHHHHHHhc-Ccc----cCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 2223444444555666665422 122346677766443 332 467799999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~ 240 (354)
+.+|+++++++++.++++|||..+.|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++.++....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~ 227 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGN 227 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998776532
Q ss_pred -CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543 241 -PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------- 303 (354)
Q Consensus 241 -~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------- 303 (354)
.++.++ .+.....+..++++++.+.. ++..++...+.+++..+.+|..++..+..++..
T Consensus 228 ~~it~~~v~~~~~~~~~~~i~~l~~ai~~----~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i 303 (355)
T TIGR02397 228 GNITYEDVNELLGLVDDEKLIELLEAILN----KDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAV 303 (355)
T ss_pred CCCCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence 344333 22333456678888888876 566677788888888888888887655554333
Q ss_pred -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHH
Q 018543 304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342 (354)
Q Consensus 304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~ 342 (354)
+++.+....+++.+.+.+.+++.+.+..+.+|.++.+++
T Consensus 304 ~~~~~~~l~~~a~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 304 LESEQEFLKELALKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 223333445677888899999999999999999998764
No 41
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.8e-40 Score=318.42 Aligned_cols=323 Identities=20% Similarity=0.257 Sum_probs=258.4
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
|.+||||++|+|++||+++++.|+.++.+++.+| +||+||+|+||||+++.+++.+.|......... |+.|.
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~-------c~~c~ 78 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP-------CGTCE 78 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC-------CccCH
Confidence 7799999999999999999999999999999999 899999999999999999999987553210001 22333
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~ 161 (354)
.|..+....+.+++++++... .....++++++.+.. .+. .++++||||||+|.|+.++++.|+++||+++.++
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~--~~vd~ir~ii~~~~~-~p~----~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~t 151 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASH--TSVDDAREIIERVQF-RPA----LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHA 151 (585)
T ss_pred HHHHHhcCCCCeEEEEecccc--CCHHHHHHHHHHHhh-Ccc----cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCe
Confidence 333444444555666665322 222356776655443 232 4678999999999999999999999999999999
Q ss_pred eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Q 018543 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-Y 240 (354)
Q Consensus 162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~ 240 (354)
.||+++++.+++.++++|||+.+.|++++..++..++..++.++|+.++++++..++..++||+|.+++.|+.++.+. .
T Consensus 152 v~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~ 231 (585)
T PRK14950 152 IFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGG 231 (585)
T ss_pred EEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877642 3
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------- 303 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------- 303 (354)
.++.+. .+.....+..++++++.+.. ++...+...+.+++..|.++..++..+.+.+..
T Consensus 232 ~It~e~V~~ll~~s~~~~vf~Lidal~~----~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i 307 (585)
T PRK14950 232 EISLSQVQSLLGISGDEEVKALAEALLA----KDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDL 307 (585)
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccC
Confidence 444433 23344456788999999887 677788888888888899998887755544322
Q ss_pred -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++.+....++..+.+.+..++.|..+.+.+|.++++++.
T Consensus 308 ~p~~~~~~~~qa~~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~ 360 (585)
T PRK14950 308 TADEKAALQKVSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALL 360 (585)
T ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Confidence 3444456678889999999999998889999999999875
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.8e-40 Score=288.42 Aligned_cols=271 Identities=24% Similarity=0.374 Sum_probs=208.9
Q ss_pred CCcccccCCCCCCCcccCHHHH---HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 77 (354)
|+.+++.||++++|++||++++ +.|.+++++|.+++++|||||||||||+|+.+|+...+
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~----------------- 74 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA----------------- 74 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC-----------------
Confidence 4778999999999999999998 68999999999999999999999999999999986511
Q ss_pred CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~ 157 (354)
.+..+++...+.. .++++++....... .++..|+||||+|++++..|++|+..+|+
T Consensus 75 ---------------~f~~~sAv~~gvk---dlr~i~e~a~~~~~-----~gr~tiLflDEIHRfnK~QQD~lLp~vE~- 130 (436)
T COG2256 75 ---------------AFEALSAVTSGVK---DLREIIEEARKNRL-----LGRRTILFLDEIHRFNKAQQDALLPHVEN- 130 (436)
T ss_pred ---------------ceEEeccccccHH---HHHHHHHHHHHHHh-----cCCceEEEEehhhhcChhhhhhhhhhhcC-
Confidence 1234444434443 47777776654432 35678999999999999999999999997
Q ss_pred cCceeEEEEec-CCC-cccHHHhhhcceeeecCCCHHHHHHHHHHHHH--HcCCC-----CCHHHHHHHHHHcCCCHHHH
Q 018543 158 SASCRLILCCN-SSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK--KEGLQ-----LPSGFATRLAEKSNRSLRRA 228 (354)
Q Consensus 158 ~~~~~~Il~~~-~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~--~~~~~-----i~~~~l~~i~~~s~gd~R~a 228 (354)
....+|.+|+ +|+ .+.++|+|||+++.|+|++.+++...|++.+. ..|+. +++++++.++..++||.|++
T Consensus 131 -G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 131 -GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred -CeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 3344555443 333 79999999999999999999999999999544 33544 78999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHH
Q 018543 229 ILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAE 308 (354)
Q Consensus 229 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~ 308 (354)
+|.||.++.....-. .+ +.+.++.++... ...+++..+.+|++++ ++.|+
T Consensus 210 LN~LE~~~~~~~~~~---~~--------~~~~l~~~l~~~-~~~~Dk~gD~hYdliS--------------A~hKS---- 259 (436)
T COG2256 210 LNLLELAALSAEPDE---VL--------ILELLEEILQRR-SARFDKDGDAHYDLIS--------------ALHKS---- 259 (436)
T ss_pred HHHHHHHHHhcCCCc---cc--------CHHHHHHHHhhh-hhccCCCcchHHHHHH--------------HHHHh----
Confidence 999998876543211 00 123333333311 1233344455666544 67887
Q ss_pred HHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543 309 IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG 347 (354)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~ 347 (354)
.|++..+++.+|..||..|++|+. ||+|++.++|+
T Consensus 260 vRGSD~dAALyylARmi~~GeDp~----yiARRlv~~As 294 (436)
T COG2256 260 VRGSDPDAALYYLARMIEAGEDPL----YIARRLVRIAS 294 (436)
T ss_pred hccCCcCHHHHHHHHHHhcCCCHH----HHHHHHHHHHH
Confidence 889999999999999999999986 99999999986
No 43
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.4e-38 Score=293.85 Aligned_cols=313 Identities=21% Similarity=0.285 Sum_probs=246.7
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
|.|++||||++|+|++||+.+++.+.++++.|+.+| ++||||||+|||++++++++.+.+..... .+..+
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~~~~~------ 75 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDD---PNEDF------ 75 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---CCCCC------
Confidence 679999999999999999999999999999999887 99999999999999999999887743210 00000
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~ 159 (354)
....++++.. +......++++++.+...+. .+++++|+|||+|.++..+++.|++++++++.
T Consensus 76 -----------~~~~~~l~~~--~~~~~~~i~~l~~~~~~~p~-----~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~ 137 (367)
T PRK14970 76 -----------SFNIFELDAA--SNNSVDDIRNLIDQVRIPPQ-----TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPA 137 (367)
T ss_pred -----------CcceEEeccc--cCCCHHHHHHHHHHHhhccc-----cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCC
Confidence 0111223221 11222346666665443322 45779999999999999999999999999988
Q ss_pred ceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-
Q 018543 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ- 238 (354)
Q Consensus 160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~- 238 (354)
++.+|++++...++.++++|||..++|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.|+.++.+
T Consensus 138 ~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~ 217 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFC 217 (367)
T ss_pred ceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543 239 QYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------- 303 (354)
Q Consensus 239 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~------------- 303 (354)
+..++.+. .+.....++.++++++.+.. ++..++...+.+++..+.+|..++..+..++..
T Consensus 218 ~~~it~~~v~~~~~~~~~~~if~l~~ai~~----~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l 293 (367)
T PRK14970 218 GKNITRQAVTENLNILDYDTYINVTDLILE----NKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALL 293 (367)
T ss_pred CCCCCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccc
Confidence 23344332 12233345678899999887 566667777888888899999887766554332
Q ss_pred ---------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 304 ---------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 304 ---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
+++.+...+.+..+.+.+..++.+.++.+.+|.++.++...
T Consensus 294 ~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~~ 349 (367)
T PRK14970 294 EVGEQAKKRYEVQSQKVSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASI 349 (367)
T ss_pred cCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhc
Confidence 23444456678888999999999999999899888887653
No 44
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=100.00 E-value=4.7e-38 Score=285.06 Aligned_cols=296 Identities=23% Similarity=0.337 Sum_probs=231.4
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.+|+|||||++|+|++||+++++.++.+++.|+.|| ++|+||||+|||++++++++++.+
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~------------------- 69 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA------------------- 69 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------------------
Confidence 489999999999999999999999999999999999 666999999999999999987511
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-CHHHHHHHHHHHhhcc
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-SREAQHSLRRTMEKYS 158 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-~~~~~~~Ll~~le~~~ 158 (354)
..+++++.+ +. ...+++.+..+....+. .+++++|||||+|.+ +.++++.|..++++++
T Consensus 70 -------------~~~~i~~~~-~~--~~~i~~~l~~~~~~~~~----~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~ 129 (316)
T PHA02544 70 -------------EVLFVNGSD-CR--IDFVRNRLTRFASTVSL----TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS 129 (316)
T ss_pred -------------cceEeccCc-cc--HHHHHHHHHHHHHhhcc----cCCCeEEEEECcccccCHHHHHHHHHHHHhcC
Confidence 113344443 11 12344545444444332 245799999999999 6778888988999999
Q ss_pred CceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 018543 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLE-------FIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231 (354)
Q Consensus 159 ~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~-------~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~ 231 (354)
.++.+|++||..+++.++++|||..+.|++|+.++...++. .++.++|+.++++++..+++.+.||+|++++.
T Consensus 130 ~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~ 209 (316)
T PHA02544 130 KNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINE 209 (316)
T ss_pred CCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999999999999999999999999999988775544 44556899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHH
Q 018543 232 FETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKH 311 (354)
Q Consensus 232 L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~~~~ 311 (354)
++.++.. ..++... +.. -+...++++++.+.. .+..+.+. .... .+.++..++..+.+.+...+.+..+.
T Consensus 210 l~~~~~~-~~i~~~~-l~~-~~~~~~~~l~~~l~~----~d~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 279 (316)
T PHA02544 210 LQRYAST-GKIDAGI-LSE-VTNSDIDDVVEALKA----KDFKAVRA-LAPN--YANDYASFVGKLYDELYPQVTPPSII 279 (316)
T ss_pred HHHHHcc-CCCCHHH-HHH-hhHHHHHHHHHHHHc----CCHHHHHH-HHHH--hccCHHHHHHHHHHHHHHhCCHHHHH
Confidence 9987643 3333222 111 123445566665543 34444444 3322 26788999999988888888888889
Q ss_pred HHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 312 EVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
++.+.++.++.++..|.++.+|+|+|++++|..+
T Consensus 280 ~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~~~~ 313 (316)
T PHA02544 280 RLIEIIGENNQYHGFAADQEIHLLYLLTQLMLEC 313 (316)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999754
No 45
>PRK04132 replication factor C small subunit; Provisional
Probab=100.00 E-value=8e-38 Score=305.74 Aligned_cols=272 Identities=31% Similarity=0.471 Sum_probs=232.4
Q ss_pred EEEeC--CCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHH
Q 018543 37 LLFYG--PPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI 114 (354)
Q Consensus 37 ~ll~G--p~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~ 114 (354)
.+..| |++.||||+|+++|+++++.+. ..+++++++++.... ..+++.+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~---------------------------~~~~lElNASd~rgi--d~IR~iI 617 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENW---------------------------RHNFLELNASDERGI--NVIREKV 617 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccc---------------------------cCeEEEEeCCCcccH--HHHHHHH
Confidence 56678 8889999999999999865421 134688998885433 3689999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHH
Q 018543 115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQI 194 (354)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~ 194 (354)
+.++...+. +..+++|+||||+|.|+.++|++|+++||+|+.+++||++||++++++++|+|||+.++|++++.+++
T Consensus 618 k~~a~~~~~---~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i 694 (846)
T PRK04132 618 KEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI 694 (846)
T ss_pred HHHHhcCCc---CCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHH
Confidence 888877665 22357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhH
Q 018543 195 VKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKR 272 (354)
Q Consensus 195 ~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (354)
...|.+++.++|+.++++++..|+..++||+|+|++.||.++.....++.+. .+......+.+++++..++. .+
T Consensus 695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~----~~ 770 (846)
T PRK04132 695 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALK----GN 770 (846)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhc----Cc
Confidence 9999999999999999999999999999999999999998876655565544 11222233466777776665 56
Q ss_pred HHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 273 LFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 273 ~~~~~~~~~~l~-~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
+.+++..+++++ ..|+++..++.+++..+.. .+++..+..++..+++|+.++..|+++.+||++|++++|.+
T Consensus 771 ~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~~~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~ 844 (846)
T PRK04132 771 FLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM 844 (846)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhh
Confidence 889999999998 6899999999999999877 57888999999999999999999999999999999999864
No 46
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=6.4e-38 Score=297.77 Aligned_cols=297 Identities=25% Similarity=0.371 Sum_probs=233.8
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhc---CC-CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~---~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
|+|+|||||+++++++||+++++.|..|++. |. .+++||+||||+||||+|+++|+++.
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----------------- 64 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----------------- 64 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----------------
Confidence 8999999999999999999999999999874 44 34599999999999999999999761
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----HHHHHHHH
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----EAQHSLRR 152 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----~~~~~Ll~ 152 (354)
..++++++++.... ..++..+.......++. ..+++||||||+|.++. ..+++|++
T Consensus 65 ---------------~~~ielnasd~r~~--~~i~~~i~~~~~~~sl~---~~~~kvIiIDEaD~L~~~~d~~~~~aL~~ 124 (482)
T PRK04195 65 ---------------WEVIELNASDQRTA--DVIERVAGEAATSGSLF---GARRKLILLDEVDGIHGNEDRGGARAILE 124 (482)
T ss_pred ---------------CCEEEEcccccccH--HHHHHHHHHhhccCccc---CCCCeEEEEecCcccccccchhHHHHHHH
Confidence 11355666554332 24566665555544431 13679999999999976 56889999
Q ss_pred HHhhccCceeEEEEecCCCcccH-HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 018543 153 TMEKYSASCRLILCCNSSSKVTE-AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231 (354)
Q Consensus 153 ~le~~~~~~~~Il~~~~~~~l~~-~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~ 231 (354)
+++. ....+|++||++..+.+ ++++||..++|++|+..++..+|..++.++|+.+++++++.|++.++||+|.|++.
T Consensus 125 ~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~ 202 (482)
T PRK04195 125 LIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAIND 202 (482)
T ss_pred HHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9985 44779999999988777 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCH-H
Q 018543 232 FETCRVQQYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDA-E 308 (354)
Q Consensus 232 L~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~-~ 308 (354)
|+.++.....++.+. .+...+++..+++++..++.. ++...+...+++ ..++|..++..+.+++...+.+ +
T Consensus 203 Lq~~a~~~~~it~~~v~~~~~~d~~~~if~~l~~i~~~---k~~~~a~~~~~~---~~~~~~~i~~~l~en~~~~~~~~~ 276 (482)
T PRK04195 203 LQAIAEGYGKLTLEDVKTLGRRDREESIFDALDAVFKA---RNADQALEASYD---VDEDPDDLIEWIDENIPKEYDDPE 276 (482)
T ss_pred HHHHhcCCCCCcHHHHHHhhcCCCCCCHHHHHHHHHCC---CCHHHHHHHHHc---ccCCHHHHHHHHHhccccccCCHH
Confidence 999765545555443 233466778889999998863 334455554544 5689999999999988876443 3
Q ss_pred HH---HHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 309 IK---HEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 309 ~~---~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
.. ...+..+..|..++..+.+ ++|..|.+.+|..
T Consensus 277 ~~~~a~~~ls~ad~~~~~~~~~~~--~~l~~~~~~~m~~ 313 (482)
T PRK04195 277 DIARAYDALSRADIFLGRVKRTQN--YDLWRYASDLMTA 313 (482)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcCC--cchHHHHHHHhhh
Confidence 22 4577777788888887665 8999999998764
No 47
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-37 Score=264.58 Aligned_cols=310 Identities=25% Similarity=0.326 Sum_probs=245.6
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
|+|+|||||.+++|+++|++++..+.+....++.||+|||||||+|||+.+.+.|+.++++...
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~---------------- 92 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPT---------------- 92 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCc----------------
Confidence 6899999999999999999999999999999999999999999999999999999999775211
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC-CCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~ 159 (354)
....++++.++....+ .+|+.++.++.+.... .+....++++|+||+|.|+.++|++|++.+|++..
T Consensus 93 ----------~~m~lelnaSd~rgid--~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~ 160 (360)
T KOG0990|consen 93 ----------TSMLLELNASDDRGID--PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTA 160 (360)
T ss_pred ----------hhHHHHhhccCccCCc--chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhcc
Confidence 1123567777655544 5677777777665421 12234789999999999999999999999999999
Q ss_pred ceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~ 239 (354)
+++|++++|++.++.++++|||+.++|.|++.++...++.++++.+...++++....++..+.||+|.|+|.||..+...
T Consensus 161 n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~ 240 (360)
T KOG0990|consen 161 NTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKV 240 (360)
T ss_pred ceEEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877664
Q ss_pred CCCCCCC----------CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCCH
Q 018543 240 YPFKDNQ----------AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLDA 307 (354)
Q Consensus 240 ~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~il~~l~~~~~~-~~~~ 307 (354)
...+... ..+.+ ..+..+.+.++... +.++...+-++.. .++.-.+++..+...+.. .+..
T Consensus 241 ~~~~e~~~~~~~vy~c~g~p~~---~dI~~I~~~il~~~----~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~~~~~ 313 (360)
T KOG0990|consen 241 MERKELNNPNDLVYQCKGAPQP---SDIRQIIEKRMNGE----DIELMLDDSELKKPKGLARQDRRAELEQRFAIVISKT 313 (360)
T ss_pred CCCCCCCCchhhHHHhcCCCCh---hHHHHHHHHHhcCc----hHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence 4333222 11111 24455555555532 2222222222221 355566777777766665 4445
Q ss_pred HHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 308 EIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
..+..++...+..++++..|.++.+|+.+.|+.+....
T Consensus 314 ~~~~~I~~~l~~Ie~~ls~g~~~~~ql~aii~~~~~~~ 351 (360)
T KOG0990|consen 314 PVEGHILYQLADIEERLSKGCMQKEQLKAIIKNFAAEL 351 (360)
T ss_pred HHHHHHHHhHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999998887654
No 48
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=4.8e-32 Score=244.51 Aligned_cols=283 Identities=16% Similarity=0.259 Sum_probs=203.3
Q ss_pred CCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
++|++++||+.+++.|..++++|+.+| +||+||+|+|||++|+.+++.++|......
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~---------------------- 58 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE---------------------- 58 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC----------------------
Confidence 478999999999999999999999999 899999999999999999999987643211
Q ss_pred cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEec
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN 168 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 168 (354)
+++...+.+.+........++++++.+... |. .++++|+|||++|.|+.+++|+|+++||+||+++.||++|+
T Consensus 59 --h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~-p~----~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 59 --YVDIIEFKPINKKSIGVDDIRNIIEEVNKK-PY----EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred --CCCeEEeccccCCCCCHHHHHHHHHHHhcC-cc----cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 122233333222222334577777665443 33 46889999999999999999999999999999999999999
Q ss_pred CCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 018543 169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAI 248 (354)
Q Consensus 169 ~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~~~ 248 (354)
++++++++|+|||++++|++++.+++..||.+... .++++.++.++..++|+.++|...+......
T Consensus 132 ~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~~~---------- 197 (313)
T PRK05564 132 NLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDSLK---------- 197 (313)
T ss_pred ChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccHHH----------
Confidence 99999999999999999999999999999986442 4678889999999999999988765321110
Q ss_pred CCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHH---------------------------HHHH
Q 018543 249 PAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRL---------------------------LYEL 301 (354)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l---------------------------~~~~ 301 (354)
..++.++++++.+... +.......+..+...+.++..++..+ ...+
T Consensus 198 ---~~~~~~~~~~~~l~~~----~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~ 270 (313)
T PRK05564 198 ---NIRNMSLEILKDIKKS----NINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHI 270 (313)
T ss_pred ---HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHH
Confidence 0122333333333321 11111111222222222332222221 2223
Q ss_pred HHhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHH
Q 018543 302 LKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342 (354)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~ 342 (354)
.+.++......+++.+.+++..+..+.+..+.+|.++.++.
T Consensus 271 a~~~s~~~L~~~~~~l~~~~~~l~~n~n~~l~le~lll~~~ 311 (313)
T PRK05564 271 SEKFSYKKLNKMIEIINDTRDNLSSNVNPTLVFDSMLIKMQ 311 (313)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhhh
Confidence 34556666777889999999999999999999999998763
No 49
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=100.00 E-value=6.5e-34 Score=245.86 Aligned_cols=276 Identities=19% Similarity=0.316 Sum_probs=205.4
Q ss_pred CcccccCCCCCCCcccCHHHH---HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543 2 LWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 78 (354)
+..|+.||++++|.+||++++ ..|+..++++++|.++|||||||||||+|+.++..--.
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~------------------ 188 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK------------------ 188 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC------------------
Confidence 568999999999999999987 47888999999999999999999999999999873211
Q ss_pred CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc
Q 018543 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~ 158 (354)
.+..++++.+...+.. .+|++++...+...+ .+++.|+||||++++++..|+.|+..+|.
T Consensus 189 -----------~SyrfvelSAt~a~t~---dvR~ife~aq~~~~l----~krkTilFiDEiHRFNksQQD~fLP~VE~-- 248 (554)
T KOG2028|consen 189 -----------HSYRFVELSATNAKTN---DVRDIFEQAQNEKSL----TKRKTILFIDEIHRFNKSQQDTFLPHVEN-- 248 (554)
T ss_pred -----------CceEEEEEeccccchH---HHHHHHHHHHHHHhh----hcceeEEEeHHhhhhhhhhhhcccceecc--
Confidence 0123456665555544 377777765554443 35678999999999999999999999987
Q ss_pred CceeEEEEec-CCC-cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----c----C-----CCCCHHHHHHHHHHcCC
Q 018543 159 ASCRLILCCN-SSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----E----G-----LQLPSGFATRLAEKSNR 223 (354)
Q Consensus 159 ~~~~~Il~~~-~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~----~-----~~i~~~~l~~i~~~s~g 223 (354)
....+|..|+ +|+ .+..++.|||.++.+.+++.+.+..+|.+...- + + +.+++.++++++..+.|
T Consensus 249 G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred CceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 3355666544 343 799999999999999999999999999985431 1 1 23678899999999999
Q ss_pred CHHHHHHHHHHHHhc----CCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 018543 224 SLRRAILSFETCRVQ----QYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLY 299 (354)
Q Consensus 224 d~R~ai~~L~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~ 299 (354)
|.|.|+|.||..... ...-+ +..+. +.++-+.+.. +..-++++.+.+|+.++
T Consensus 329 DaR~aLN~Lems~~m~~tr~g~~~-~~~lS-------idDvke~lq~--s~~~YDr~Ge~HYntIS-------------- 384 (554)
T KOG2028|consen 329 DARAALNALEMSLSMFCTRSGQSS-RVLLS-------IDDVKEGLQR--SHILYDRAGEEHYNTIS-------------- 384 (554)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCcc-cceec-------HHHHHHHHhh--ccceecccchhHHHHHH--------------
Confidence 999999999976322 11110 11111 2222222221 12334556666776544
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543 300 ELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG 347 (354)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~ 347 (354)
++.|+ .|+...++..+|..||.+|+++++ ++||+|..+|+
T Consensus 385 A~HKS----mRG~D~nAslY~LaRMLegGEdPL----YVARRlvR~AS 424 (554)
T KOG2028|consen 385 ALHKS----MRGSDQNASLYWLARMLEGGEDPL----YVARRLVRFAS 424 (554)
T ss_pred HHHHh----hcCCccchHHHHHHHHHccCCCcH----HHHHHHHHHhh
Confidence 56665 677888899999999999999998 99999999986
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=4.5e-32 Score=253.19 Aligned_cols=280 Identities=21% Similarity=0.276 Sum_probs=200.7
Q ss_pred CcccccCCCCCCCcccCHHHHHH---HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQN---LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~---l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 78 (354)
+|++||||++|+|++||++++.. |..+++++..++++|+||||+||||+|+.+++.+...
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~----------------- 63 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP----------------- 63 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----------------
Confidence 69999999999999999999766 9999999998899999999999999999999865210
Q ss_pred CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc
Q 018543 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~ 158 (354)
.+.+++...+. ..++++++....... .++..++||||+|.++...++.|++.+|+
T Consensus 64 ---------------~~~l~a~~~~~---~~ir~ii~~~~~~~~-----~g~~~vL~IDEi~~l~~~~q~~LL~~le~-- 118 (413)
T PRK13342 64 ---------------FEALSAVTSGV---KDLREVIEEARQRRS-----AGRRTILFIDEIHRFNKAQQDALLPHVED-- 118 (413)
T ss_pred ---------------EEEEecccccH---HHHHHHHHHHHHhhh-----cCCceEEEEechhhhCHHHHHHHHHHhhc--
Confidence 12223222221 235556655433221 23568999999999999999999999986
Q ss_pred CceeEEEEecC-C-CcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 159 ASCRLILCCNS-S-SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE--GL-QLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 159 ~~~~~Il~~~~-~-~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~--~~-~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
....+|.+++. + ..+.++++|||.++.|++++.+++..++.+.+... ++ .+++++++.+++.++||+|++++.|+
T Consensus 119 ~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 119 GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33445554433 2 37889999999999999999999999999987653 55 88999999999999999999999999
Q ss_pred HHHhcCCCCCCCC--CCC------CCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh-
Q 018543 234 TCRVQQYPFKDNQ--AIP------AMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR- 304 (354)
Q Consensus 234 ~~~~~~~~~~~~~--~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~- 304 (354)
.++.....++.+. .+. ...-.+...+++..+.++-...+...+..++-.++..|++|..|...+.......
T Consensus 199 ~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 199 LAALGVDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHccCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 8765433333322 000 0000122345555544432224566788889999999999999999887776653
Q ss_pred -CCHHHHHHHHHHHHHHhhH
Q 018543 305 -LDAEIKHEVCHWAAYYEHK 323 (354)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~~ 323 (354)
+.+.....+...+...-.+
T Consensus 279 g~a~~~~~~~~~~~~~~~~~ 298 (413)
T PRK13342 279 GLADPNALQVAVAAADAVER 298 (413)
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 3333344444444444333
No 51
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=6.6e-31 Score=236.37 Aligned_cols=307 Identities=19% Similarity=0.221 Sum_probs=215.1
Q ss_pred CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (354)
+....+.+.+.+++|+.+| +||+||+|+||+++|+++|+.++|........ |+.|+.|..+...++++...
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~--------Cg~C~sC~~~~~g~HPD~~~ 78 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKS--------CGHCRGCQLMQAGTHPDYYT 78 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHHcCCCCCEEE
Confidence 5677889999999999999 99999999999999999999999975432111 44455445566677777777
Q ss_pred eCCCCC-CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543 97 LSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (354)
Q Consensus 97 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 175 (354)
+.+... .......+|++.+.+...+. .+++||+|||++|.|+.+++|+|+|+|||||+++.||++|++++++++
T Consensus 79 i~p~~~~~~I~idqiR~l~~~~~~~~~-----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 79 LTPEKGKSSLGVDAVREVTEKLYEHAR-----LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLA 153 (334)
T ss_pred EecccccccCCHHHHHHHHHHHhhccc-----cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence 766543 22344578888877766543 478899999999999999999999999999999999999999999999
Q ss_pred HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCC-C-CCCCCCCCC
Q 018543 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-YPF-K-DNQAIPAMD 252 (354)
Q Consensus 176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~~~-~-~~~~~~~~~ 252 (354)
||+|||+.+.|++|+.+++..+|.+ ...++++.+..++..++|++++|+.+++.-.... ..+ . ....+...+
T Consensus 154 TIrSRCq~~~~~~~~~~~~~~~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~~~r~~~~~~l~~~~~~~~ 228 (334)
T PRK07993 154 TLRSRCRLHYLAPPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALLQPERWQQREALCQALAYALPSGD 228 (334)
T ss_pred HHHhccccccCCCCCHHHHHHHHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999974 2246677788899999999999998875311000 000 0 000000011
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHH-HH---HHHHHHHHhCCHHHHHHHHHHHHHHhhHhhC--
Q 018543 253 WEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV-LK---RLLYELLKRLDAEIKHEVCHWAAYYEHKMRR-- 326 (354)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i-l~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 326 (354)
.. +++..+-+.+...-+.-....+.|++.-......+ .. +....+...++.......++.+.++..++..
T Consensus 229 ~~----~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~~~~~~l~~~~ 304 (334)
T PRK07993 229 WL----SLLPALNHEQAPARLHWLATLLMDALKRQHGAAYVTNQDQPPLVAQLANHLSPARLQAILGDVCHCREQLLSVT 304 (334)
T ss_pred HH----HHHHHHcccCHHHHHHHHHHHHHHHHHHhcCCcceeCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 12222111111112233334455554322211111 11 2223444566777777889999999999985
Q ss_pred CCChhHhHHHHHHHHHHHHH
Q 018543 327 GNKAIFHLEAFVAKFMSIYK 346 (354)
Q Consensus 327 ~~~~~l~l~~~i~~~~~~~~ 346 (354)
+.|..+.+|.++.++...+.
T Consensus 305 N~N~~L~le~lll~~~~~~~ 324 (334)
T PRK07993 305 GVNRELLLTDLLLRIEHYLQ 324 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHc
Confidence 88899999999988866554
No 52
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=4.4e-31 Score=241.85 Aligned_cols=203 Identities=21% Similarity=0.358 Sum_probs=164.0
Q ss_pred CCCCcccCHHHHHHHHHHHhcCC---------CCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTEQD---------CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~~~---------~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|++++||+++++.|++++..++ .+| +||+||+|+|||++|+.+|+.++|..... . .|+.|
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~--~-------~Cg~C 73 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDE--P-------GCGEC 73 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCC--C-------CCCCC
Confidence 58999999999999999999877 788 99999999999999999999999875320 0 13444
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
+.|..+....+++...+.+.... .....+|++++.+...+. .++++|+||||+|.|+++++|+|+++||+|+.+
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~~-i~i~~iR~l~~~~~~~p~-----~~~~kViiIDead~m~~~aanaLLk~LEep~~~ 147 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGLS-IGVDEVRELVTIAARRPS-----TGRWRIVVIEDADRLTERAANALLKAVEEPPPR 147 (394)
T ss_pred HHHHHHhcCCCCCEEEecccccc-CCHHHHHHHHHHHHhCcc-----cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC
Confidence 43344444555555555544322 223457887766654332 467899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
+.||++|++++.++++|+|||+.++|++|+.+++..+|.+ +.+ ++++.+..++..++|++++|+.+++
T Consensus 148 ~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 148 TVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred CeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999973 224 5688899999999999999987653
No 53
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=3.9e-31 Score=239.17 Aligned_cols=220 Identities=21% Similarity=0.333 Sum_probs=171.4
Q ss_pred ccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (354)
Q Consensus 6 kyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (354)
..+|+.+++++||+++.+.|...+++|+.+| +||+||+|+||||+++.+|+.++|.........+. ...|..|..|.
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~--~~~~~~c~~c~ 93 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL--ADPDPASPVWR 93 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc--CCCCCCCHHHH
Confidence 3689999999999999999999999999999 99999999999999999999999853211110000 00122333333
Q ss_pred cccccccCceeeeCC-CCCC------CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543 85 ELTTLSSANHVELSP-SDAG------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (354)
Q Consensus 85 ~~~~~~~~~~i~~~~-~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~ 157 (354)
.+...++++...+.. .+.. ......+|++.+.+.... ..++++|+||||+|.|+.+++|+|++++|+|
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~-----~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS-----GDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc-----ccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 444455566554432 1111 111235666665555433 2467899999999999999999999999999
Q ss_pred cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (354)
Q Consensus 158 ~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~ 234 (354)
+.++.||++|+++++++++++|||+.++|+|++.+++..+|.+.....+ ++++++..+++.++|++|.|+++++.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998554333 77899999999999999999999864
No 54
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.9e-30 Score=231.72 Aligned_cols=286 Identities=15% Similarity=0.178 Sum_probs=194.2
Q ss_pred CCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (354)
.|++++||+++++.|...+++|+++| +||+||+|+||+++|+++|+.++|... |+.|..| .+...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~-------------c~~c~~~-~~~~~ 67 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGS-------------PSKNIRR-RLEEG 67 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-------------CCCcHhc-ccccC
Confidence 58899999999999999999999988 999999999999999999999998752 1111111 13333
Q ss_pred ccCceeeeCCCC---C------------------CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHH
Q 018543 90 SSANHVELSPSD---A------------------GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQH 148 (354)
Q Consensus 90 ~~~~~i~~~~~~---~------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~ 148 (354)
++++...+.|.. . .......+|++.+.+.. .|. .++++|+|||++|.|+.+++|
T Consensus 68 ~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~-~p~----~~~~kVvII~~ae~m~~~aaN 142 (314)
T PRK07399 68 NHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSR-PPL----EAPRKVVVIEDAETMNEAAAN 142 (314)
T ss_pred CCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHcc-Ccc----cCCceEEEEEchhhcCHHHHH
Confidence 444444433320 0 01112346676655443 333 568899999999999999999
Q ss_pred HHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 018543 149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228 (354)
Q Consensus 149 ~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~a 228 (354)
+|+++||+|+ ++.||++|++++++++||+|||+.++|++++.+++..+|.+....++.. .....++..++|++|+|
T Consensus 143 aLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~a 218 (314)
T PRK07399 143 ALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAA 218 (314)
T ss_pred HHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHH
Confidence 9999999999 7899999999999999999999999999999999999999865433332 23578899999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChH---HHHHHHHHHHHHhC
Q 018543 229 ILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPV---VVLKRLLYELLKRL 305 (354)
Q Consensus 229 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~il~~l~~~~~~~~ 305 (354)
++.++..... ...+...+..+. .+...+... -+.+....+-. .++..+...+...
T Consensus 219 l~~l~~~~~~---------------~~~~~~~~~~~~-----~~~~~~~~~-a~~~~~~~~~e~Q~~~l~~~~~~~~~~- 276 (314)
T PRK07399 219 IANIEQLQSI---------------PPELLQKLEQPP-----KSPLEALEL-AKDISEELDIEQQLWLIDYLQQHYWQK- 276 (314)
T ss_pred HHHHHHHHHH---------------HHHHHHHHHhcc-----cCHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHh-
Confidence 9988754210 011111111111 111122211 11122111111 1222221112111
Q ss_pred CHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 306 DAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.....+++.+......+..+.++.+.++.+..++..
T Consensus 277 --~~~~~~~~~l~~a~~~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 277 --TKNRQLLKQLEKLRKQLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred --hcchHHHHHHHHHHHHHHHcCCcchhHHHHHHHHhc
Confidence 113567888888888899999999999988887753
No 55
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=6.2e-31 Score=256.65 Aligned_cols=298 Identities=18% Similarity=0.235 Sum_probs=202.4
Q ss_pred CCcccccCCCCCCCcccCHHHH---HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 77 (354)
++|++||||++|+|++||++++ ..++.+++.++.+|++|+||||+||||+|+++++...+.
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~---------------- 79 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH---------------- 79 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc----------------
Confidence 3799999999999999999988 478889999999999999999999999999999865211
Q ss_pred CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~ 157 (354)
.+.++....+.. .+++.++........ .++..++||||+|.++...|++|++.+|+.
T Consensus 80 ----------------f~~lna~~~~i~---dir~~i~~a~~~l~~----~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g 136 (725)
T PRK13341 80 ----------------FSSLNAVLAGVK---DLRAEVDRAKERLER----HGKRTILFIDEVHRFNKAQQDALLPWVENG 136 (725)
T ss_pred ----------------ceeehhhhhhhH---HHHHHHHHHHHHhhh----cCCceEEEEeChhhCCHHHHHHHHHHhcCc
Confidence 112222211211 234444443222111 134579999999999999999999999862
Q ss_pred cCceeEEEEecCC--CcccHHHhhhcceeeecCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCCHHHH
Q 018543 158 SASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-------KEGLQLPSGFATRLAEKSNRSLRRA 228 (354)
Q Consensus 158 ~~~~~~Il~~~~~--~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~-------~~~~~i~~~~l~~i~~~s~gd~R~a 228 (354)
...+|..++.. ..+.++++|||.++.|+|++.+++..++++++. .+++.+++++++.|++.+.||+|++
T Consensus 137 --~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 137 --TITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred --eEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 23344433322 368899999999999999999999999999887 4678999999999999999999999
Q ss_pred HHHHHHHHhcCC--C-----CCCCC--C-C----CCCCH-HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHH
Q 018543 229 ILSFETCRVQQY--P-----FKDNQ--A-I----PAMDW-EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV 293 (354)
Q Consensus 229 i~~L~~~~~~~~--~-----~~~~~--~-~----~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 293 (354)
++.|+.++.... . ++.+. . + ..-+. .+...+.+.++.++-...+.+.+..++-.++..|++|..|
T Consensus 215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I 294 (725)
T PRK13341 215 LNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFI 294 (725)
T ss_pred HHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 999998764321 1 11000 0 0 00000 0011233333333323356778888999999999999999
Q ss_pred HHHHHHHHHHh--CCHHHHHHHHHHH--HHHhhHhhCCCChhHhHHHHHH
Q 018543 294 LKRLLYELLKR--LDAEIKHEVCHWA--AYYEHKMRRGNKAIFHLEAFVA 339 (354)
Q Consensus 294 l~~l~~~~~~~--~~~~~~~~~~~~~--~~~~~~l~~~~~~~l~l~~~i~ 339 (354)
...+....... +.+.....+...+ +.-...|-+|.....|.-.++|
T Consensus 295 ~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la 344 (725)
T PRK13341 295 FRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLA 344 (725)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Confidence 99888776652 3222333333333 3333344455555555554444
No 56
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.98 E-value=3e-30 Score=233.28 Aligned_cols=310 Identities=18% Similarity=0.217 Sum_probs=208.4
Q ss_pred CCCCccc-CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 11 TLDQVIV-HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 11 ~~~~~~g-~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
.++.++| |+.+++.|+..+.+|+++| +||+||+|+||+++|+.+++.++|++...... |+.|..|..+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~--------cg~C~~c~~~~~ 74 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP--------CGTCTNCKRIDS 74 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC--------CCcCHHHHHHhc
Confidence 5788898 9999999999999999999 89999999999999999999999876322111 334443334444
Q ss_pred cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEec
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN 168 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 168 (354)
..+++...+.+.. .......++++++.+...+. .++++|+||||+|.|+.+++|+|+++||+||+++.||++|+
T Consensus 75 ~~hpD~~~i~~~~-~~i~id~ir~l~~~~~~~~~-----~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 75 GNHPDVHLVAPDG-QSIKKDQIRYLKEEFSKSGV-----ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred CCCCCEEEecccc-ccCCHHHHHHHHHHHhhCCc-----ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 4455555554442 22223467777766654432 46789999999999999999999999999999999999999
Q ss_pred CCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCC-C
Q 018543 169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ--YPFKD-N 245 (354)
Q Consensus 169 ~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~--~~~~~-~ 245 (354)
++.+++++|+|||++++|++++.+++..+|+. +| ++++....++.. .|++++|+.+++.-.... ..+.. -
T Consensus 149 ~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~-~g~~~~A~~l~~~~~~~~~~~~~~~~~ 221 (329)
T PRK08058 149 NKHQILPTILSRCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGL-TNSVEEALALSEDDWFAQARALVIKLY 221 (329)
T ss_pred ChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHH-cCCHHHHHHHhcCchHHHHHHHHHHHH
Confidence 99999999999999999999999999888863 45 556666666666 478999998865322110 00000 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-cChh----HHHHHHHHHHHHHHcCC--ChHHHH---HHHHHHHHHhCCHHHHHHHHH
Q 018543 246 QAIPAMDWEEFVFEIASDIMQE-QSPK----RLFQVRGKLYELLLNCV--PPVVVL---KRLLYELLKRLDAEIKHEVCH 315 (354)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~-~~~~----~~~~~~~~~~~l~~~~~--~~~~il---~~l~~~~~~~~~~~~~~~~~~ 315 (354)
..+...+.. .+..+.+.+... .... .+.-....+.|++.... +...+. .+....+.+..+......+++
T Consensus 222 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~l~~~~~ 300 (329)
T PRK08058 222 EALHEKDLQ-SFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQIVAALE 300 (329)
T ss_pred HHHHcCCHH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 000011111 111111111110 0001 11122233445442211 111111 123334445677778889999
Q ss_pred HHHHHhhHhhCCCChhHhHHHHHHHHH
Q 018543 316 WAAYYEHKMRRGNKAIFHLEAFVAKFM 342 (354)
Q Consensus 316 ~~~~~~~~l~~~~~~~l~l~~~i~~~~ 342 (354)
.+.+...++..+.+..+.+|.++.++.
T Consensus 301 ~~~~~~~~l~~n~n~~L~le~lll~~~ 327 (329)
T PRK08058 301 LILEAKRRLNSNVNFQLVMEQLVLRLQ 327 (329)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 999999999999999999999988753
No 57
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.98 E-value=1.1e-30 Score=234.32 Aligned_cols=303 Identities=17% Similarity=0.194 Sum_probs=205.0
Q ss_pred HHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 23 ~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
..+++++++|+.+| +||+||+|+||+++|+.+|+.++|........ |+.|+.|..+...++++...+.+.+
T Consensus 10 ~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~--------Cg~C~sC~~~~~g~HPD~~~i~~~~ 81 (328)
T PRK05707 10 SLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGA--------CGSCKGCQLLRAGSHPDNFVLEPEE 81 (328)
T ss_pred HHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHhcCCCCCEEEEeccC
Confidence 44556677799999 99999999999999999999999976432111 4455544556666677777776654
Q ss_pred CC-CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhh
Q 018543 102 AG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180 (354)
Q Consensus 102 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR 180 (354)
.+ ......+|++.+.+...+. .++++|+|||++|.|+.+++|+|+|+||+|++++.||++|++++.+++||+||
T Consensus 82 ~~~~i~id~iR~l~~~~~~~~~-----~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 82 ADKTIKVDQVRELVSFVVQTAQ-----LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred CCCCCCHHHHHHHHHHHhhccc-----cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence 32 2334578888877665443 46789999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCC-CCCCCCCCCCHHHHHH
Q 018543 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-YPF-KDNQAIPAMDWEEFVF 258 (354)
Q Consensus 181 ~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 258 (354)
|+.++|++|+.+++..+|..... ..+++....++..++|++.+|+.+++.-.... ..+ ..-..+.... ....
T Consensus 157 c~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~~~~~~l~~~~~~~--~~~~ 230 (328)
T PRK05707 157 CQQQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHEQGVREQRARVLDGVKKLLKQQ--QSAS 230 (328)
T ss_pred ceeeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHCcchHHHHHHHHHHHHHHhcCc--ccHH
Confidence 99999999999999999985431 24567777889999999999988764211000 000 0000000000 0112
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHc--CCChH-HH---HHHHHHHHHHhCCHHHHHHHHHHHHHHhhHhh--CCCCh
Q 018543 259 EIASDIMQEQSPKRLFQVRGKLYELLLN--CVPPV-VV---LKRLLYELLKRLDAEIKHEVCHWAAYYEHKMR--RGNKA 330 (354)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~-~i---l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~ 330 (354)
.+++.+.+.+...-+.-....+.|++.. +.++. .+ .......+.+.++.......++.+.++..++. .+.+.
T Consensus 231 ~~~~~~~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l~~~~NvN~ 310 (328)
T PRK05707 231 QLAESWLKVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKVLGKANLNR 310 (328)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccCCCCH
Confidence 3333222211111122233345555432 21211 11 11233344456677777888999999998885 68889
Q ss_pred hHhHHHHHHHHHHH
Q 018543 331 IFHLEAFVAKFMSI 344 (354)
Q Consensus 331 ~l~l~~~i~~~~~~ 344 (354)
.+.+|.++.++...
T Consensus 311 ~L~le~lll~~~~~ 324 (328)
T PRK05707 311 QLLLEALLVQWAGL 324 (328)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887554
No 58
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.98 E-value=2.8e-30 Score=229.79 Aligned_cols=303 Identities=16% Similarity=0.127 Sum_probs=206.9
Q ss_pred CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (354)
+....+.|.+.+.+|+.+| +||+||+|+||+++|+.+|+.++|....... .|+.|+.|..+...++++...
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~--------~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ--------PCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC--------CCCCCHHHHHHhcCCCCCEEE
Confidence 5677889999999999999 9999999999999999999999997643211 144555555666667777777
Q ss_pred eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHH
Q 018543 97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176 (354)
Q Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 176 (354)
+.+.+........+|++.+.+...+. .+++||+|||++|.|+.+++|+|+|+||+||+++.||++|++++++++|
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~~-----~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHAQ-----QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhccc-----cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchH
Confidence 76644333344578888777665543 4688999999999999999999999999999999999999999999999
Q ss_pred HhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCC-C-CCCCCCCCCH
Q 018543 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-YPF-K-DNQAIPAMDW 253 (354)
Q Consensus 177 l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~~~-~-~~~~~~~~~~ 253 (354)
|+|||+.+.|++++.+++..+|.... ..++..+..++..++|++..|+..++...... ..+ . ........+.
T Consensus 154 I~SRC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r~~~~~~l~~~~~~~~~ 228 (325)
T PRK06871 154 IYSRCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRRSP 228 (325)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChHHHHHHHHHHHHHHhccCCH
Confidence 99999999999999999999998643 22344567778899999999988765321100 000 0 0000000011
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHc--CCChHHHH---HHHHHHHHHhCCHHHHHHHHHHHHHHhhHhhC--
Q 018543 254 EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLN--CVPPVVVL---KRLLYELLKRLDAEIKHEVCHWAAYYEHKMRR-- 326 (354)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~il---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 326 (354)
.+++..+.+......+.-....+.|++.. +.+...+. ......+.++.+.....+.++.+.+...++..
T Consensus 229 ----~~~~~~~~k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~~~r~~L~~~~ 304 (325)
T PRK06871 229 ----LELLPLFDKELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDLLQIN 304 (325)
T ss_pred ----HHHHHHHhhccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHccc
Confidence 11222111111111123334455565532 21111111 12333445567777888999999999999964
Q ss_pred CCChhHhHHHHHHHHH
Q 018543 327 GNKAIFHLEAFVAKFM 342 (354)
Q Consensus 327 ~~~~~l~l~~~i~~~~ 342 (354)
+-|..+.++..+.+..
T Consensus 305 ~iN~~L~l~~~l~~~~ 320 (325)
T PRK06871 305 AVNQELILLDGLTRLV 320 (325)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5556776666665543
No 59
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=3.1e-30 Score=234.48 Aligned_cols=217 Identities=20% Similarity=0.299 Sum_probs=169.3
Q ss_pred cCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc---cccccccCCCccc
Q 018543 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE---NKTWKIDAGSRNI 82 (354)
Q Consensus 7 yrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~---~~~~~~~~~~~~~ 82 (354)
.+|+++++++||+++++.|.+.+.+|+++| +||+||+|+||+++|+.+|+.++|......... ..... .|+.|..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~ 91 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPV 91 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChH
Confidence 699999999999999999999999999999 999999999999999999999999763211100 00000 0223333
Q ss_pred cccccccccCceeeeCCC--CCC-----CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHh
Q 018543 83 DLELTTLSSANHVELSPS--DAG-----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME 155 (354)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~--~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le 155 (354)
|..+...++++...+.+. +.+ ......+|++.+.+.... ..++++|+||||+|.|+.+++|+|++++|
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~-----~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTA-----AEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCc-----ccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 334555566666666542 221 112234666665544332 25678999999999999999999999999
Q ss_pred hccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 156 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 156 ~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
+++.++.||++|++++.+.++++|||+.+.|++++.+++..+|.+. +...+++.+..++..++|++++|+.+++
T Consensus 167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999863 3334556668899999999999999886
No 60
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=2.2e-29 Score=223.78 Aligned_cols=194 Identities=20% Similarity=0.275 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (354)
+..+++.|...+++|++|| +||+||+|+||+++|+++|+.++|..... ++.|+.|.-+...++++...
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~-----------~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP-----------AAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCC-----------CCcchHHHHHhcCCCCCEEE
Confidence 6778899999999999999 99999999999999999999999975321 11222222334445566555
Q ss_pred e--CCCCCCC-----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC
Q 018543 97 L--SPSDAGF-----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (354)
Q Consensus 97 ~--~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 169 (354)
+ .+++.+. .....+|++.+.+...+. .+++||+|||++|.|+.+++|+|+|+||+|++++.||++|++
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~-----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQ-----YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcc-----cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 5 4443321 123457777766554433 467899999999999999999999999999999999999999
Q ss_pred CCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 170 ~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
+++++|||+|||+.+.|++|+.+++..+|.. .+ +++..+..++..++|++..|+..++
T Consensus 153 ~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 153 PARLPATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred hhhCchHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999999999999999999974 23 4566677789999999999988764
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=6.7e-30 Score=211.02 Aligned_cols=190 Identities=24% Similarity=0.371 Sum_probs=135.2
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHh-----cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~-----~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
...+++||++|+|++||++++..++-+++ ++.++|++||||||+||||+|+.+|+++..+ +.
T Consensus 13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~-----------~~-- 79 (233)
T PF05496_consen 13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN-----------FK-- 79 (233)
T ss_dssp -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------------EE--
T ss_pred hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC-----------eE--
Confidence 45688999999999999999988876664 2457899999999999999999999986211 00
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~ 156 (354)
..+.. .... ..++...+... .+..|+||||+|+|++..|+.|+..||+
T Consensus 80 -------------------~~sg~--~i~k---~~dl~~il~~l--------~~~~ILFIDEIHRlnk~~qe~LlpamEd 127 (233)
T PF05496_consen 80 -------------------ITSGP--AIEK---AGDLAAILTNL--------KEGDILFIDEIHRLNKAQQEILLPAMED 127 (233)
T ss_dssp -------------------EEECC--C--S---CHHHHHHHHT----------TT-EEEECTCCC--HHHHHHHHHHHHC
T ss_pred -------------------eccch--hhhh---HHHHHHHHHhc--------CCCcEEEEechhhccHHHHHHHHHHhcc
Confidence 11110 0111 12222222221 2347999999999999999999999997
Q ss_pred cc------------------CceeEEEEecCCCcccHHHhhhccee-eecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543 157 YS------------------ASCRLILCCNSSSKVTEAIRSRCLNI-RINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (354)
Q Consensus 157 ~~------------------~~~~~Il~~~~~~~l~~~l~sR~~~i-~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i 217 (354)
.. +...+|.+|+....+.+++++|+.++ ++..++.+++.+++++.+...+++++++++.+|
T Consensus 128 ~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~I 207 (233)
T PF05496_consen 128 GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEI 207 (233)
T ss_dssp SEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHH
T ss_pred CeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 42 23567888888889999999999875 799999999999999988889999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 018543 218 AEKSNRSLRRAILSFETCR 236 (354)
Q Consensus 218 ~~~s~gd~R~ai~~L~~~~ 236 (354)
+..|.|..|-|.++|..+.
T Consensus 208 a~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 208 ARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp HHCTTTSHHHHHHHHHHHC
T ss_pred HHhcCCChHHHHHHHHHHH
Confidence 9999999999999999774
No 62
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=8.6e-28 Score=215.33 Aligned_cols=301 Identities=17% Similarity=0.140 Sum_probs=199.3
Q ss_pred CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (354)
+...++.+... .++.+| +||+||+|+||+++|+.+|+.++|......... |+.|..|..+...++++...
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~-------Cg~C~~C~~~~~~~HPD~~~ 76 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEP-------CGTCAACNWFAQGNHPDYRI 76 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCC-------CCCCHHHHHHHcCCCCCEEE
Confidence 45666677664 579999 999999999999999999999999764211111 34444444555566666665
Q ss_pred eCCCC-------------------C--------CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHH
Q 018543 97 LSPSD-------------------A--------GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHS 149 (354)
Q Consensus 97 ~~~~~-------------------~--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ 149 (354)
+.+.. . .......+|++.+.+...+ ..+++||+|||++|.|+.+++|+
T Consensus 77 i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~-----~~~~~kV~iI~~ae~m~~~AaNa 151 (342)
T PRK06964 77 VRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGT-----HRGGARVVVLYPAEALNVAAANA 151 (342)
T ss_pred EecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCC-----ccCCceEEEEechhhcCHHHHHH
Confidence 54431 0 1122245777766544332 25788999999999999999999
Q ss_pred HHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Q 018543 150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229 (354)
Q Consensus 150 Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai 229 (354)
|+|+||+|++++.||++|++++++++||+|||+.++|++|+.+++..+|... ++ ++ .+.++..++|++.+|+
T Consensus 152 LLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~--~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 152 LLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--AD--ADALLAEAGGAPLAAL 223 (342)
T ss_pred HHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--Ch--HHHHHHHcCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999752 33 33 2345778899999998
Q ss_pred HHHHHHHhcC-CCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChH-HHH---HHHHHHHHHh
Q 018543 230 LSFETCRVQQ-YPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPV-VVL---KRLLYELLKR 304 (354)
Q Consensus 230 ~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~il---~~l~~~~~~~ 304 (354)
..++.-.... ..+- + .+... ......++++.+.+.....-+.-....+.|++....... .+. .+....+...
T Consensus 224 ~~~~~~~~~~~~~~~-~-~l~~~-~~~~~~~~~~~~~k~~~~~~l~~l~~~lrD~l~~~~~~~~~~~~d~~~~l~~~a~~ 300 (342)
T PRK06964 224 ALASDENRPLRDWTL-G-QLAAG-AACDAFACAETLQKLPVPAVLGWLQRWLYDLLAQRLAGAPRYFPAQRAALARCAAA 300 (342)
T ss_pred HHHCCChHHHHHHHH-H-HHhcc-CchhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCceecHhHHHHHHHHHHc
Confidence 8763210000 0000 0 00000 001223333333322212223334455666654221111 111 1233344556
Q ss_pred CCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 305 LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
++.....+..+.+.++...+..+.+..+.+|.++.++-.
T Consensus 301 ~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~ 339 (342)
T PRK06964 301 VDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYRE 339 (342)
T ss_pred CCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHH
Confidence 777778888899988888888999999999988887644
No 63
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=1.3e-27 Score=212.19 Aligned_cols=194 Identities=15% Similarity=0.247 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (354)
+....+.|...+++|+.+| +||+||.|+||+++|+.+|+.++|..... . .|+.|+.|..+...++++...
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-~--------~Cg~C~sC~~~~~g~HPD~~~ 78 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-E--------ACGFCHSCELMQSGNHPDLHV 78 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-C--------CCCCCHHHHHHHcCCCCCEEE
Confidence 5677889999999999999 99999999999999999999999976421 1 144555445556667777777
Q ss_pred eCCCCC-CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543 97 LSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (354)
Q Consensus 97 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 175 (354)
+.+... .......+|++.+.+...+. .+++||+|||++|.|+.+++|+|+|++||||+++.||++|+++++++|
T Consensus 79 i~p~~~~~~I~vdqiR~l~~~~~~~~~-----~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp 153 (319)
T PRK06090 79 IKPEKEGKSITVEQIRQCNRLAQESSQ-----LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLP 153 (319)
T ss_pred EecCcCCCcCCHHHHHHHHHHHhhCcc-----cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence 766532 22334567777665544432 467899999999999999999999999999999999999999999999
Q ss_pred HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
||+|||+.+.|++|+.+++..+|.. .|+. ....++..++|++.+|+..++
T Consensus 154 TI~SRCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 154 TIVSRCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred HHHhcceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 9999999999999999999999974 3443 235678899999999988764
No 64
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.8e-28 Score=223.52 Aligned_cols=309 Identities=26% Similarity=0.357 Sum_probs=206.9
Q ss_pred CCcccCHHHHHHHHHHHh-cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccc
Q 018543 13 DQVIVHQDIAQNLKKLVT-EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~-~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
+++++++++...+..++. .++.|| +||+||||+|||++|.++|+.++|........++ .+..|..+....
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~--------~~~~~~~~~~~~ 72 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCG--------HCRSCKLIPAGN 72 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCccc--------chhhhhHHhhcC
Confidence 467888888888888887 688999 9999999999999999999999988754322211 112223555666
Q ss_pred cCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170 (354)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 170 (354)
+++++++++++.+..+ .+.+.++.+...... .+..++++||||||+|.|+.+++++|++++|+|+.+++||++||++
T Consensus 73 ~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~-~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 73 HPDFLELNPSDLRKID--IIVEQVRELAEFLSE-SPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred CCceEEecccccCCCc--chHHHHHHHHHHhcc-CCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 7788999999887653 233333343333322 1124678999999999999999999999999999999999999999
Q ss_pred CcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCCC---
Q 018543 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP-FKDNQ--- 246 (354)
Q Consensus 171 ~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~-~~~~~--- 246 (354)
.+++++|+|||+.++|+|++......+++ ++++..++..+.||+|.+++.++..+..... ...-.
T Consensus 150 ~~il~tI~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~~~~~~~~~~~~~ 218 (325)
T COG0470 150 SKILPTIRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAALEIGEESIYEALL 218 (325)
T ss_pred hhccchhhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999955544444433 6788999999999999999999988765221 00000
Q ss_pred -CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHH
Q 018543 247 -AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEL-LLNCVPPVVVLKRLLYELLKR----LDAEIKHEVCHWAAYY 320 (354)
Q Consensus 247 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~il~~l~~~~~~~----~~~~~~~~~~~~~~~~ 320 (354)
............+++..... ....+....... ...+.........+....... ...............+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (325)
T COG0470 219 LALPESLAQLAALELLKLAEN-----KFLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQA 293 (325)
T ss_pred hhChhhcccccHHHHHHHHHh-----cchhHHHHHHHHHHHcCcchhHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHH
Confidence 00000000111122222110 111122222221 122223323222222222221 2334456688888999
Q ss_pred hhHhhCCCChhHhHHHHHHHHHHHHHHH
Q 018543 321 EHKMRRGNKAIFHLEAFVAKFMSIYKGF 348 (354)
Q Consensus 321 ~~~l~~~~~~~l~l~~~i~~~~~~~~~~ 348 (354)
..++..+..+.+++..++...+.....+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (325)
T COG0470 294 RRRLLDGLLALIQLENLLAELLLLQLLL 321 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888876653
No 65
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.96 E-value=1.3e-28 Score=229.68 Aligned_cols=289 Identities=22% Similarity=0.330 Sum_probs=208.3
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhc--------------------------------CCCCe--EEEeCCCCCcH
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE--------------------------------QDCPH--LLFYGPPGSGK 47 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~--------------------------------~~~~~--~ll~Gp~G~GK 47 (354)
||++||+|+.|.|+.|.+.+.+.+..|++. ++++. +||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 799999999999999999988888888741 23333 89999999999
Q ss_pred HHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCC
Q 018543 48 KTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKG 127 (354)
Q Consensus 48 Ttla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 127 (354)
||+|+.+|++. +..++++|+++.+... .+++.+........+ +..
T Consensus 340 TTLAHViAkqa--------------------------------GYsVvEINASDeRt~~--~v~~kI~~avq~~s~-l~a 384 (877)
T KOG1969|consen 340 TTLAHVIAKQA--------------------------------GYSVVEINASDERTAP--MVKEKIENAVQNHSV-LDA 384 (877)
T ss_pred hHHHHHHHHhc--------------------------------CceEEEecccccccHH--HHHHHHHHHHhhccc-ccc
Confidence 99999999964 1235899999877643 466666555544443 223
Q ss_pred CCCceEEEEeCCCcCCHHHHHHHHHHHhh--c----c---------------CceeEEEEecCCC-cccHHHhhhcceee
Q 018543 128 KRGFKVLVLNEVDKLSREAQHSLRRTMEK--Y----S---------------ASCRLILCCNSSS-KVTEAIRSRCLNIR 185 (354)
Q Consensus 128 ~~~~~viiiDE~d~l~~~~~~~Ll~~le~--~----~---------------~~~~~Il~~~~~~-~l~~~l~sR~~~i~ 185 (354)
.+++.++||||+|+-.+.+.+.++..++. . + -..++|+|||+.. .-+.+|+--|.++.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~ 464 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIA 464 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEE
Confidence 46889999999999999999999999962 1 1 1245999999986 34566777789999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--------CCCCCCHHHHH
Q 018543 186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--------AIPAMDWEEFV 257 (354)
Q Consensus 186 ~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~--------~~~~~~~~~~~ 257 (354)
|.+|+...+.+.|+.||.+||+..+..++..+++.+.+|+|.+||.||.++...+..+... .....+-...+
T Consensus 465 f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~sl 544 (877)
T KOG1969|consen 465 FVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSL 544 (877)
T ss_pred ecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhhhcccccccch
Confidence 9999999999999999999999999999999999999999999999999998766432211 11223334456
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHHHHcC---CChHHHHHHHHHHHHH-hCCHHH---HHHHHHHHHHHhhHhh
Q 018543 258 FEIASDIMQEQSPKRLFQVRGKLYELLLNC---VPPVVVLKRLLYELLK-RLDAEI---KHEVCHWAAYYEHKMR 325 (354)
Q Consensus 258 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~il~~l~~~~~~-~~~~~~---~~~~~~~~~~~~~~l~ 325 (354)
|.++..++.-........+.+.+|++.... -....++..++..+.+ .+.+.. -....+|+.+++.-+.
T Consensus 545 f~~w~ei~ql~k~~~~r~~~~~l~~l~~~~~l~~~servlqg~f~~~~~~~~~D~~i~~~~~~s~WL~F~D~l~~ 619 (877)
T KOG1969|consen 545 FSWWKEIFQLRKKDRHRSIDEQLYGLLNQVELHGNSERVLQGCFSIFLRLKYSDLGIGKPANASDWLFFHDLLYQ 619 (877)
T ss_pred HHHHHHHHHHhhcccccchHHHhhhhhhhhhccCchHHHHhhhhccccccccccccccchhhhhhHHHhhhHHHH
Confidence 667666664333333344555666665421 1234566666665554 332221 2346667766665444
No 66
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.95 E-value=9.8e-28 Score=194.77 Aligned_cols=160 Identities=30% Similarity=0.471 Sum_probs=119.1
Q ss_pred cCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543 17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (354)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (354)
||+.+++.|...++++++|| +||+||+|+||+++|+.+|+.++|...... .|..|..|..+....+++..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~---------~c~~c~~c~~~~~~~~~d~~ 71 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED---------PCGECRSCRRIEEGNHPDFI 71 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-----------SSSHHHHHHHTT-CTTEE
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC---------CCCCCHHHHHHHhccCcceE
Confidence 89999999999999999999 899999999999999999999999875532 13344433455556677777
Q ss_pred eeCCCCCC-CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCccc
Q 018543 96 ELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174 (354)
Q Consensus 96 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 174 (354)
.+.+.... ......++++...+.... ..++++|+||||+|.|+.+++|+|+++||+|+.++.|||+|+++++++
T Consensus 72 ~~~~~~~~~~i~i~~ir~i~~~~~~~~-----~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 72 IIKPDKKKKSIKIDQIREIIEFLSLSP-----SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKIL 146 (162)
T ss_dssp EEETTTSSSSBSHHHHHHHHHHCTSS------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-
T ss_pred EEecccccchhhHHHHHHHHHHHHHHH-----hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHCh
Confidence 77666542 223346776665543332 246789999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeeecCCC
Q 018543 175 EAIRSRCLNIRINSPT 190 (354)
Q Consensus 175 ~~l~sR~~~i~~~~~~ 190 (354)
+||+|||+.++|++++
T Consensus 147 ~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 147 PTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHHTTSEEEEE----
T ss_pred HHHHhhceEEecCCCC
Confidence 9999999999999874
No 67
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=8.6e-26 Score=197.42 Aligned_cols=193 Identities=19% Similarity=0.256 Sum_probs=151.0
Q ss_pred cCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543 17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (354)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (354)
.|+.+++.|+..+++++++| +||+|| +||+++|+.+|+.++|........ |+.|..|..+...++++..
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~--------Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLP--------CGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHhcCCCCCee
Confidence 47889999999999999999 999996 689999999999999976432111 3444444455556667766
Q ss_pred eeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543 96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (354)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 175 (354)
.+.+.+. ......+|++.+.+...+. .++++|+|||++|.|+.+++|+|+|++|+|++++.||++|+++++++|
T Consensus 76 ~i~p~~~-~I~idqIR~l~~~~~~~p~-----~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLp 149 (290)
T PRK07276 76 VIEPQGQ-VIKTDTIRELVKNFSQSGY-----EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLP 149 (290)
T ss_pred eecCCCC-cCCHHHHHHHHHHHhhCcc-----cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCch
Confidence 6666532 2334578888887766432 567899999999999999999999999999999999999999999999
Q ss_pred HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
||+|||+.++|++ +.+++.++|. ++|+ +.+....++.. .|++.+|+.+++
T Consensus 150 TI~SRcq~i~f~~-~~~~~~~~L~----~~g~--~~~~a~~la~~-~~s~~~A~~l~~ 199 (290)
T PRK07276 150 TIKSRTQIFHFPK-NEAYLIQLLE----QKGL--LKTQAELLAKL-AQSTSEAEKLAQ 199 (290)
T ss_pred HHHHcceeeeCCC-cHHHHHHHHH----HcCC--ChHHHHHHHHH-CCCHHHHHHHhC
Confidence 9999999999976 7777777775 4564 34545555555 468999998863
No 68
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.95 E-value=4.5e-27 Score=196.90 Aligned_cols=186 Identities=23% Similarity=0.313 Sum_probs=142.6
Q ss_pred HHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 23 ~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
+.|++.+++++.+| +||+||+|+|||++++.+++.+.|........ |..|..|..+.....++...+.+..
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~--------c~~~~~c~~~~~~~~~d~~~~~~~~ 73 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEP--------CGECPSCRLIEAGNHPDLHRLEPEG 73 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHHcCCCCcEEEecccc
Confidence 46788889999998 99999999999999999999998863221111 1222212222222333333333322
Q ss_pred CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhc
Q 018543 102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (354)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~ 181 (354)
+......++++++.+...+ . .++++|+||||+|.++.++++.|++.||++++++.+|++++++.++.++++|||
T Consensus 74 -~~~~~~~i~~i~~~~~~~~-~----~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~ 147 (188)
T TIGR00678 74 -QSIKVDQVRELVEFLSRTP-Q----ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC 147 (188)
T ss_pred -CcCCHHHHHHHHHHHccCc-c----cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc
Confidence 1122245676676554433 2 467899999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 018543 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228 (354)
Q Consensus 182 ~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~a 228 (354)
.+++|.+++.+++..||.+. | +++++++.+++.++||+|+|
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999999999999865 4 78999999999999999975
No 69
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=3.6e-25 Score=192.71 Aligned_cols=269 Identities=15% Similarity=0.163 Sum_probs=184.8
Q ss_pred HHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeC
Q 018543 20 DIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (354)
Q Consensus 20 ~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (354)
..++.|...+++|+.+| +||+||+|+||+++|+.+|+.++|..... .| ..+....+++...+.
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c-------------~~~~~~~HPD~~~i~ 67 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPE---AA-------------YKISQKIHPDIHEFS 67 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HH-------------HHHhcCCCCCEEEEe
Confidence 45788999999999999 99999999999999999999999864221 11 123344456665565
Q ss_pred CCCCC-CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHH
Q 018543 99 PSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177 (354)
Q Consensus 99 ~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 177 (354)
+...+ ......+|++.+.+...+. .+++||+|||++|.|+.+++|+|+|+||+||+++.||++|+++++++|||
T Consensus 68 p~~~~~~I~idqiR~l~~~~~~~p~-----e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 68 PQGKGRLHSIETPRAIKKQIWIHPY-----ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred cCCCCCcCcHHHHHHHHHHHhhCcc-----CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence 55432 2233467887777665432 57889999999999999999999999999999999999999999999999
Q ss_pred hhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH--HHHHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 018543 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR--RAILSFETCRVQQYPFKDNQAIPAMDWEE 255 (354)
Q Consensus 178 ~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R--~ai~~L~~~~~~~~~~~~~~~~~~~~~~~ 255 (354)
+|||+.++|+++. ...++++.+..++..++|+++ .+...++... .. .... ..+
T Consensus 143 ~SRcq~~~~~~~~---------------~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~~~---~~---~~~~----~re 197 (290)
T PRK05917 143 RSRSLSIHIPMEE---------------KTLVSKEDIAYLIGYAQGKESVTEVGQIVKGSA---DT---DKQV----LRD 197 (290)
T ss_pred HhcceEEEccchh---------------ccCCCHHHHHHHHHHhCCChhHHHHHHHHhcch---HH---HHHH----HHH
Confidence 9999999998861 224678899999999999985 3333332210 00 0000 001
Q ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHH--cCCChH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhHhhCCCChhH
Q 018543 256 FVFEIASDIMQEQSPKRLFQVRGKLYELLL--NCVPPV-VVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIF 332 (354)
Q Consensus 256 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 332 (354)
.+..+ +.-....+.|++. .+.+.. .+..+....+.+ .+......+++.+.+...++..+.+..+
T Consensus 198 ~~~~~------------L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~~-~~~~~l~~~i~~i~~a~~~l~~N~N~~l 264 (290)
T PRK05917 198 KTKAM------------LEVLLQLFRDRFLLALKVPASALAYPDLLKEILT-LPVLPLEKVLSIIERAVQALDNSSSAPS 264 (290)
T ss_pred HHHHH------------HHHHHHHHHHHHHHHcCCchhhhccHHHHHHHHh-cccccHHHHHHHHHHHHHHHHhcCCHHH
Confidence 11111 1112223334332 222222 122222222322 2222255788999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 018543 333 HLEAFVAKFMSIYKG 347 (354)
Q Consensus 333 ~l~~~i~~~~~~~~~ 347 (354)
.++.++.++...+++
T Consensus 265 ~le~l~l~l~~~~~~ 279 (290)
T PRK05917 265 CLEWVALQLWSLKNR 279 (290)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887764
No 70
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=4.1e-24 Score=191.68 Aligned_cols=292 Identities=15% Similarity=0.157 Sum_probs=190.9
Q ss_pred CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543 18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (354)
+...++.+... .++++| +||+||+|+|||++|+.+|+.++|.....-.. .|+.|+.|..+...++++...
T Consensus 6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~-------~Cg~C~~C~~~~~~~HpD~~~ 76 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHK-------PCGECMSCHLFGQGSHPDFYE 76 (325)
T ss_pred cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCC-------CCCcCHHHHHHhcCCCCCEEE
Confidence 45566666655 579999 99999999999999999999999975421110 144555555666777788888
Q ss_pred eCCCCC----C----CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEec
Q 018543 97 LSPSDA----G----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN 168 (354)
Q Consensus 97 ~~~~~~----~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 168 (354)
+.+... + ......+|++.+.+...+. .++++|++||+++.|++.++++|+++||+++.++.||++|+
T Consensus 77 ~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~-----~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth 151 (325)
T PRK08699 77 ITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSV-----RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred EecccccccccccCCCcCHHHHHHHHHHHhhCcc-----cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 876421 1 1233468887766554332 46789999999999999999999999999988899999999
Q ss_pred CCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH---------HHHHHHhcC
Q 018543 169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL---------SFETCRVQQ 239 (354)
Q Consensus 169 ~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~---------~L~~~~~~~ 239 (354)
+++.++++++|||+.+.|++|+.+++..+|.. .++. +.. ..+ ..++|....+.. .++.+.
T Consensus 152 ~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~----~~~~--~~~-~~l-~~~~g~p~~~~~~~~~~~r~~~~~~l~--- 220 (325)
T PRK08699 152 AADKVLPTIKSRCRKMVLPAPSHEEALAYLRE----RGVA--EPE-ERL-AFHSGAPLFDEEPELRALRIKLLDILA--- 220 (325)
T ss_pred ChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh----cCCC--cHH-HHH-HHhCCChhhhcCchHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999974 2443 221 122 345665533221 111111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcc--ChhHHHHHHHHHHHHHHcCC-ChHHH---HHHHHHHHHHhCCHHHHHHH
Q 018543 240 YPFKDNQAIPAMDWEEFVFEIASDIMQEQ--SPKRLFQVRGKLYELLLNCV-PPVVV---LKRLLYELLKRLDAEIKHEV 313 (354)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-~~~~i---l~~l~~~~~~~~~~~~~~~~ 313 (354)
..+ ...+..+++.+.+.. ...-+.-....+.|++.-.. ....+ ..+....+.+.++.......
T Consensus 221 ----------~~~-~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~~~~~~d~~~~l~~~a~~~~~~~L~~~ 289 (325)
T PRK08699 221 ----------EPR-LLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQTASGFRPRNVFAA 289 (325)
T ss_pred ----------ccC-hhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCCcccCHhHHHHHHHHHHhcCHHHHHHH
Confidence 000 011223333332210 01112223334455543211 11111 11222334456677777888
Q ss_pred HHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 314 CHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
.+.+.++...+..+.+..+.+|.++.++...+
T Consensus 290 ~~~l~~~~~~l~~n~n~~L~le~lll~~~~~~ 321 (325)
T PRK08699 290 EDMLKQLAPYGFHTLNVKMQIEHLLINYLELK 321 (325)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 88888888888899999999999888775543
No 71
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.93 E-value=3e-24 Score=180.76 Aligned_cols=187 Identities=24% Similarity=0.347 Sum_probs=149.9
Q ss_pred cccCCCCCCCcccCHHHHHHHHHHHhc-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
...||++|+|++||++++++++-+++. ..+.|+||+||||.||||+|+.+|+++... +.
T Consensus 18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn-----------~k----- 81 (332)
T COG2255 18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN-----------LK----- 81 (332)
T ss_pred cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC-----------eE-----
Confidence 357999999999999999999988763 456789999999999999999999998210 00
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS- 158 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~- 158 (354)
. +++.++ . ...++..-+... .+.+|+||||+|++++...+.|...||++.
T Consensus 82 --------~-tsGp~l---------e---K~gDlaaiLt~L--------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~l 132 (332)
T COG2255 82 --------I-TSGPAL---------E---KPGDLAAILTNL--------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRL 132 (332)
T ss_pred --------e-cccccc---------c---ChhhHHHHHhcC--------CcCCeEEEehhhhcChhHHHHhhhhhhheeE
Confidence 0 001011 1 112233323322 345899999999999999999999999753
Q ss_pred -----------------CceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 018543 159 -----------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK 220 (354)
Q Consensus 159 -----------------~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~ 220 (354)
+...+|.+|+..-.+..++++|+- +.++.-++.+++..++.+-+...++.++++++..|+.+
T Consensus 133 DI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 133 DIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARR 212 (332)
T ss_pred EEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh
Confidence 345688888888899999999985 57888899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 018543 221 SNRSLRRAILSFETCR 236 (354)
Q Consensus 221 s~gd~R~ai~~L~~~~ 236 (354)
|.|-+|-|..+|....
T Consensus 213 SRGTPRIAnRLLrRVR 228 (332)
T COG2255 213 SRGTPRIANRLLRRVR 228 (332)
T ss_pred ccCCcHHHHHHHHHHH
Confidence 9999999999998654
No 72
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.93 E-value=9.5e-25 Score=198.35 Aligned_cols=190 Identities=24% Similarity=0.321 Sum_probs=148.5
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhc-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
+|-.+|||.+|++++|+++.++.+..++.. ...+|++|+||||+|||++++++|+++...- .
T Consensus 14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~-----------~-- 80 (328)
T PRK00080 14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI-----------R-- 80 (328)
T ss_pred hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe-----------E--
Confidence 477899999999999999999988877752 3345699999999999999999999762110 0
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~ 156 (354)
....... .....+..++. .. +...+++|||+|.++...++.|+..|++
T Consensus 81 -------------------~~~~~~~--~~~~~l~~~l~---~l--------~~~~vl~IDEi~~l~~~~~e~l~~~~e~ 128 (328)
T PRK00080 81 -------------------ITSGPAL--EKPGDLAAILT---NL--------EEGDVLFIDEIHRLSPVVEEILYPAMED 128 (328)
T ss_pred -------------------EEecccc--cChHHHHHHHH---hc--------ccCCEEEEecHhhcchHHHHHHHHHHHh
Confidence 0000000 00011222221 11 2347999999999999888888888876
Q ss_pred cc------------------CceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543 157 YS------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (354)
Q Consensus 157 ~~------------------~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i 217 (354)
.. +...+|++++....+.++++||| ..++|++++.+++.+++++.+...++.++++++..|
T Consensus 129 ~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~i 208 (328)
T PRK00080 129 FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEI 208 (328)
T ss_pred cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 42 23567888888889999999998 569999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 018543 218 AEKSNRSLRRAILSFETCR 236 (354)
Q Consensus 218 ~~~s~gd~R~ai~~L~~~~ 236 (354)
++.++|++|.+.+.|+.+.
T Consensus 209 a~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 209 ARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred HHHcCCCchHHHHHHHHHH
Confidence 9999999999999998654
No 73
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=1.3e-22 Score=179.08 Aligned_cols=289 Identities=13% Similarity=0.138 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC-ceee
Q 018543 19 QDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA-NHVE 96 (354)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 96 (354)
..+++.|++.+++|+++| +||+|++|+||+++++.+++.++|...+.+.... ++ +...
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~--------------------~p~n~~~ 61 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE--------------------LPANIIL 61 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC--------------------CCcceEE
Confidence 356788999999999999 9999999999999999999999886432110000 11 1122
Q ss_pred eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHH
Q 018543 97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176 (354)
Q Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 176 (354)
+.+.+ .......++++++.+...+ . ..++++|+|||+++.++..++|+|+++||+||+++.||++|+++++++++
T Consensus 62 ~d~~g-~~i~vd~Ir~l~~~~~~~~-~---~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~T 136 (299)
T PRK07132 62 FDIFD-KDLSKSEFLSAINKLYFSS-F---VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPT 136 (299)
T ss_pred eccCC-CcCCHHHHHHHHHHhccCC-c---ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHH
Confidence 22111 1122234555554432221 1 23588999999999999999999999999999999999999999999999
Q ss_pred HhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-C-CCCCCCCCCCHH
Q 018543 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP-F-KDNQAIPAMDWE 254 (354)
Q Consensus 177 l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~-~-~~~~~~~~~~~~ 254 (354)
|+|||++++|++++.+++..+|... + ++++....++..++ ++.+|+..++.-...... + ..-..... +.
T Consensus 137 I~SRc~~~~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~~~~~~~~~~~~~~l~~~~~-~~- 207 (299)
T PRK07132 137 IVSRCQVFNVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYINKESENLLKKFEEALNKSLK-EK- 207 (299)
T ss_pred HHhCeEEEECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHhcCCHHHHHHHHHHHHHhhh-hH-
Confidence 9999999999999999999999742 3 56777777777776 599999876422110000 0 00000000 00
Q ss_pred HHHHHHHHHHHhccChhH-HHHHHHHHHHHHHc--CCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhHhhCCCCh
Q 018543 255 EFVFEIASDIMQEQSPKR-LFQVRGKLYELLLN--CVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAYYEHKMRRGNKA 330 (354)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~--~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (354)
..+....+.......... +.-..-+..+++.. +.++..+... ...+.+ .++. ..+++.+.++..++..+.|.
T Consensus 208 ~~l~~~~~~~~~ke~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~-~~~i~~~~~s~---~~li~~i~~~~~~L~~N~N~ 283 (299)
T PRK07132 208 YELILFLNKKLTKENALFLLKLLKFFFKSIFANKKKKNPKNIKVA-FSKKKKFKIEF---FELITIIDEFLNSLETNENF 283 (299)
T ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCChHhHhhH-HHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCH
Confidence 011111111111000000 11111223333332 2233222222 111111 1222 22488889999999999999
Q ss_pred hHhHHHHHHHHHHHH
Q 018543 331 IFHLEAFVAKFMSIY 345 (354)
Q Consensus 331 ~l~l~~~i~~~~~~~ 345 (354)
.+++|.++.++.-.|
T Consensus 284 ~l~~e~lll~l~e~~ 298 (299)
T PRK07132 284 NLQKQAFLVKIYEIY 298 (299)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887654
No 74
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=3.3e-24 Score=205.68 Aligned_cols=222 Identities=20% Similarity=0.255 Sum_probs=142.2
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-----EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-----LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-----~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
+|+|||||++++|++||++.++.++.|+.....++ ++|+||||+||||+++++++.+.. .. .+|.
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~-~~-------~Ew~-- 142 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI-QV-------QEWS-- 142 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh-HH-------HHHh--
Confidence 79999999999999999999999999998644332 999999999999999999997622 11 1110
Q ss_pred CCCccccccccccccCc-eeeeCCCCCC--CcchhHHHHHHHHHHhcCCCC-CCCCCCceEEEEeCCCcCCHH---HHHH
Q 018543 77 AGSRNIDLELTTLSSAN-HVELSPSDAG--FQDRYVVQEVIKEMAKNRPID-TKGKRGFKVLVLNEVDKLSRE---AQHS 149 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~viiiDE~d~l~~~---~~~~ 149 (354)
++. .+......+ .+........ ......+++++.......... ....++.+||+|||++.+... ++..
T Consensus 143 npv-----~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~ 217 (637)
T TIGR00602 143 NPT-----LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHE 217 (637)
T ss_pred hhh-----hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHH
Confidence 000 000000000 0000000000 111123445444433211110 011346789999999766432 2333
Q ss_pred HHH-HHhhccCceeEEEEecCCCc---------------ccHHHhh--hcceeeecCCCHHHHHHHHHHHHHHcCCC---
Q 018543 150 LRR-TMEKYSASCRLILCCNSSSK---------------VTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQ--- 208 (354)
Q Consensus 150 Ll~-~le~~~~~~~~Il~~~~~~~---------------l~~~l~s--R~~~i~~~~~~~~~~~~~L~~~~~~~~~~--- 208 (354)
+++ ...+ ...+++|+++++... +.+++++ |+.+|.|+|++..++.+.|.+++..++..
T Consensus 218 lLr~~~~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 218 ILRWKYVS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHHHHhhc-CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 333 2212 245677887774211 2378888 56779999999999999999999887532
Q ss_pred ---C-CHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543 209 ---L-PSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 209 ---i-~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~ 239 (354)
+ ++++++.|+..++||+|.||+.||.+|..+
T Consensus 297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred ccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence 2 468999999999999999999999987764
No 75
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.92 E-value=3.6e-24 Score=204.75 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=149.6
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCC-------Cccccccccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKTWK 74 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-------~~~~~~~~~~~~ 74 (354)
+|.|||||.+|++++|+++.++.++..+......|++|+||||||||++|+++.+...... ...+.+++....
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~ 133 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTAR 133 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccccc
Confidence 6999999999999999999999999888777777899999999999999999987532111 111122211000
Q ss_pred ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhc--C-C-CCCCCCCCceEEEEeCCCcCCHHHHHHH
Q 018543 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN--R-P-IDTKGKRGFKVLVLNEVDKLSREAQHSL 150 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~--~-~-~~~~~~~~~~viiiDE~d~l~~~~~~~L 150 (354)
..-..... ..+ +... ..+......+... . + ...-......+++|||++.|++..|+.|
T Consensus 134 ---------~~~~~~~~-~li-------~~~~-~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~L 195 (531)
T TIGR02902 134 ---------FDERGIAD-PLI-------GSVH-DPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKL 195 (531)
T ss_pred ---------CCccccch-hhc-------CCcc-cchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHH
Confidence 00000000 000 0000 0000000000000 0 0 0000123457999999999999999999
Q ss_pred HHHHhhc----------------------------cCceeEEEEe-cCCCcccHHHhhhcceeeecCCCHHHHHHHHHHH
Q 018543 151 RRTMEKY----------------------------SASCRLILCC-NSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFI 201 (354)
Q Consensus 151 l~~le~~----------------------------~~~~~~Il~~-~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~ 201 (354)
++.||+. +.++++|++| ++++.++++++|||..+.|++++.+++..++++.
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~ 275 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNA 275 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHH
Confidence 9999762 1234566654 4677899999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 018543 202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (354)
Q Consensus 202 ~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~ 237 (354)
+++.++.+++++++.+..++. |.|.++++++.++.
T Consensus 276 a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 276 AEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAG 310 (531)
T ss_pred HHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence 999999999999998888765 99999999998764
No 76
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.92 E-value=9.3e-24 Score=179.77 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=138.0
Q ss_pred CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHH
Q 018543 33 DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ 111 (354)
Q Consensus 33 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 111 (354)
..|| +||+||+|+||..+|..+|+.++|..... . |+.|+.|..+....+++...+.+.... .....+|
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~--------~--Cg~C~sC~~i~~~~HPDl~~i~p~~~~-I~id~ir 73 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANG--------F--CKTCESCLKILNGKYNDFYLIFDQKNP-IKKEDAL 73 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCC--------C--CCCCHHHHHHhcCCCCCEEEecCCccc-CCHHHHH
Confidence 4567 99999999999999999999999976321 1 444544455666667776666555422 2334677
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCC--
Q 018543 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP-- 189 (354)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~-- 189 (354)
++.+.+.... . ..+++||+||+++|.|+.+++|+|++++|+||+++.||++|++++++++||+|||+.+.|+++
T Consensus 74 ~l~~~l~~~s-~---e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~ 149 (261)
T PRK05818 74 SIINKLNRPS-V---ESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEK 149 (261)
T ss_pred HHHHHHccCc-h---hcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhh
Confidence 7776665322 1 135689999999999999999999999999999999999999999999999999999999988
Q ss_pred --------CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543 190 --------TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235 (354)
Q Consensus 190 --------~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~ 235 (354)
++.++.+.|... .+ +++ .++..++|++.+|+.+++.+
T Consensus 150 ~~~~~~~~~~~~i~~~L~~~---~~--~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 150 KVPFKVESNDRYFQYILLSF---YS--VDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred hcccccccChHHHHHHHHHc---cC--ccH----HHHHHcCCCHHHHHHHHHHH
Confidence 555666655531 12 344 67778999999999999854
No 77
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.91 E-value=4.9e-23 Score=185.85 Aligned_cols=182 Identities=22% Similarity=0.303 Sum_probs=141.6
Q ss_pred CCCCCcccCHHHHHHHHHHHh-----cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~-----~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (354)
++|++++|++++++.|..++. .+..+|++|+||||+|||++++++|+++...- .
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~-----------~---------- 59 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL-----------K---------- 59 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE-----------E----------
Confidence 579999999999999999887 34566799999999999999999999762210 0
Q ss_pred cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc------
Q 018543 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ 158 (354)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------ 158 (354)
...... ... ..++...+... +...+++|||++.+++..++.|+..|++..
T Consensus 60 -----------~~~~~~--~~~---~~~l~~~l~~~--------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~ 115 (305)
T TIGR00635 60 -----------ITSGPA--LEK---PGDLAAILTNL--------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIG 115 (305)
T ss_pred -----------Eeccch--hcC---chhHHHHHHhc--------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeec
Confidence 000000 000 11122222211 234799999999999999999998886432
Q ss_pred ------------CceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q 018543 159 ------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL 225 (354)
Q Consensus 159 ------------~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~ 225 (354)
+...+|.+++.+..+.++++|||. .++|++++.+++.+++++.+...++.+++++++.|++.++|++
T Consensus 116 ~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 116 KGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred cCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 235678888888899999999994 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018543 226 RRAILSFETCR 236 (354)
Q Consensus 226 R~ai~~L~~~~ 236 (354)
|.+.++++.+.
T Consensus 196 R~~~~ll~~~~ 206 (305)
T TIGR00635 196 RIANRLLRRVR 206 (305)
T ss_pred chHHHHHHHHH
Confidence 99999998764
No 78
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.89 E-value=2.8e-22 Score=189.21 Aligned_cols=221 Identities=23% Similarity=0.396 Sum_probs=135.1
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhc---CCCC--eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~---~~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
+|+|||+|++.+|++.|++.++.++.|++. +..+ .++|+||+||||||+++++|+++.. . -.+|.
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~-~-------v~Ew~-- 77 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF-E-------VQEWI-- 77 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC-e-------eEEec--
Confidence 799999999999999999999999999975 2222 2899999999999999999998722 1 11221
Q ss_pred CCCccccccccccccCceeeeCC--CCCC--CcchhHHHHHHHHHHhcCCCCC---CCCCCceEEEEeCCCcCCHHHHHH
Q 018543 77 AGSRNIDLELTTLSSANHVELSP--SDAG--FQDRYVVQEVIKEMAKNRPIDT---KGKRGFKVLVLNEVDKLSREAQHS 149 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~--~~~~--~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~viiiDE~d~l~~~~~~~ 149 (354)
+|........ ...++.. .... ......+.++.-.......... ....+.+||+|+|...........
T Consensus 78 np~~~~~~~~------~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~ 151 (519)
T PF03215_consen 78 NPVSFRESDN------QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSR 151 (519)
T ss_pred CCCCcccccc------ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHH
Confidence 1111000000 0000000 0000 0000011111100011111100 122467999999976543332255
Q ss_pred HHHHHhhc--cCce-eEEEEecCCC-----------------cccHHHhhh--cceeeecCCCHHHHHHHHHHHHHHc--
Q 018543 150 LRRTMEKY--SASC-RLILCCNSSS-----------------KVTEAIRSR--CLNIRINSPTEEQIVKVLEFIAKKE-- 205 (354)
Q Consensus 150 Ll~~le~~--~~~~-~~Il~~~~~~-----------------~l~~~l~sR--~~~i~~~~~~~~~~~~~L~~~~~~~-- 205 (354)
|...|.++ ...+ ++|++.++.+ -+.+.+... +..|.|+|.+..-+.+.|.+++..|
T Consensus 152 f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~ 231 (519)
T PF03215_consen 152 FREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEAR 231 (519)
T ss_pred HHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 55555543 1223 5555444210 133556554 5689999999999999999999988
Q ss_pred ---CC-CCC--HHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 018543 206 ---GL-QLP--SGFATRLAEKSNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 206 ---~~-~i~--~~~l~~i~~~s~gd~R~ai~~L~~~~~~ 238 (354)
+. ..+ .+.++.|++.+.||+|.||+.||.+|..
T Consensus 232 ~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~ 270 (519)
T PF03215_consen 232 SSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCLK 270 (519)
T ss_pred hhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence 32 222 4469999999999999999999999983
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=6.7e-22 Score=173.89 Aligned_cols=191 Identities=24% Similarity=0.287 Sum_probs=133.0
Q ss_pred CCCCcccCHHHHHHHHHHHh----------c-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVT----------E-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~----------~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 75 (354)
.+++++|.+.+++.++..+. . +..+|++|+|||||||||+|+++|+.+......
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~----------- 72 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVL----------- 72 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcc-----------
Confidence 36789999999877765431 1 234569999999999999999999976432110
Q ss_pred cCCCccccccccccccCceeeeCCCCCC----CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------
Q 018543 76 DAGSRNIDLELTTLSSANHVELSPSDAG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------- 143 (354)
....+++...++.- ......+++.++. . ...|+||||+|.|.
T Consensus 73 --------------~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~---a---------~~~VL~IDE~~~L~~~~~~~~~ 126 (261)
T TIGR02881 73 --------------SKGHLIEVERADLVGEYIGHTAQKTREVIKK---A---------LGGVLFIDEAYSLARGGEKDFG 126 (261)
T ss_pred --------------cCCceEEecHHHhhhhhccchHHHHHHHHHh---c---------cCCEEEEechhhhccCCccchH
Confidence 00011111111100 0001123333322 1 12699999999875
Q ss_pred HHHHHHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543 144 REAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (354)
Q Consensus 144 ~~~~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i 217 (354)
.+.++.|++.|++......+|+++...+ .+.|+++||+ ..++|++++.+++..++++.+...+..++++++..+
T Consensus 127 ~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l 206 (261)
T TIGR02881 127 KEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL 206 (261)
T ss_pred HHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence 4577889999998776666666654332 4678999999 569999999999999999999998999999999888
Q ss_pred HHH----------cCCCHHHHHHHHHHHHhc
Q 018543 218 AEK----------SNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 218 ~~~----------s~gd~R~ai~~L~~~~~~ 238 (354)
++. +.||.|.+.|+++.+...
T Consensus 207 ~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 207 REHLYKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 553 369999999999986543
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.88 E-value=3.4e-21 Score=166.40 Aligned_cols=182 Identities=13% Similarity=0.276 Sum_probs=134.9
Q ss_pred CCCCcc--cCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 11 TLDQVI--VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 11 ~~~~~~--g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
+|++++ ++..++..+..+......++++|+||+|+||||+++++++++...+..
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~------------------------ 75 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRA------------------------ 75 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCe------------------------
Confidence 788887 477788889888876666679999999999999999999876432110
Q ss_pred cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhcc--CceeEE
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYS--ASCRLI 164 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~--~~~~~I 164 (354)
...+....... ...++.+.+. +..+++|||++.+. +..+..|+.++.... .+..+|
T Consensus 76 -----v~y~~~~~~~~----~~~~~~~~~~-----------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li 135 (235)
T PRK08084 76 -----VGYVPLDKRAW----FVPEVLEGME-----------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLL 135 (235)
T ss_pred -----EEEEEHHHHhh----hhHHHHHHhh-----------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEE
Confidence 01111100000 1122222221 23689999999885 455666767665432 234688
Q ss_pred EEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543 165 LCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (354)
Q Consensus 165 l~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~ 236 (354)
++++.+. .+.+.++||| .++.+++|+.+++..+|++.+...|+.++++++++|++.+.||+|.+++.|+.+-
T Consensus 136 ~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 136 ITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred EeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 8888664 3679999999 7999999999999999999888889999999999999999999999999998753
No 81
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.87 E-value=3e-21 Score=175.84 Aligned_cols=219 Identities=21% Similarity=0.331 Sum_probs=139.2
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHh-----cCCCCe--EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~-----~~~~~~--~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 74 (354)
+|+|||+|++.+++..|+..+..++.|++ ....++ +||+||+||||||+++.+++++ +.. -.+|.
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-g~~-------~~Ew~ 142 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-GYQ-------LIEWS 142 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-Cce-------eeeec
Confidence 79999999999999999999999999998 555665 8999999999999999999976 222 11122
Q ss_pred ccCCCccccccccccccCceeeeCCCCCCCcchhHH---HHHHHHHHhcCCC---CCCCCCCceEEEEeCCCcC-CHHHH
Q 018543 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVV---QEVIKEMAKNRPI---DTKGKRGFKVLVLNEVDKL-SREAQ 147 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i---~~~~~~~~~~~~~---~~~~~~~~~viiiDE~d~l-~~~~~ 147 (354)
+|.... ...+..-..+..+......+ ..++......... .....+.+++|+|||.... ..+..
T Consensus 143 --Npi~~~--------~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~ 212 (634)
T KOG1970|consen 143 --NPINLK--------EPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDS 212 (634)
T ss_pred --CCcccc--------ccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhH
Confidence 111100 00000000000010010111 2222222111111 1123456789999997443 23233
Q ss_pred HHHHHHHhhc---cCceeEEEEecCCC--------cccHHHhh--hcceeeecCCCHHHHHHHHHHHHHHcCCCCC----
Q 018543 148 HSLRRTMEKY---SASCRLILCCNSSS--------KVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLP---- 210 (354)
Q Consensus 148 ~~Ll~~le~~---~~~~~~Il~~~~~~--------~l~~~l~s--R~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~---- 210 (354)
..+...|..+ .....++++|+... .....+.- |...|.|+|+.+.-+++.|+++|..++...+
T Consensus 213 ~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 213 ETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 4444444333 33344555555443 23344444 4568999999999999999999999887666
Q ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 018543 211 --SGFATRLAEKSNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 211 --~~~l~~i~~~s~gd~R~ai~~L~~~~~~ 238 (354)
...++.++..++||+|.||+.||..+..
T Consensus 293 ~~~~~v~~i~~~s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 293 PDTAEVELICQGSGGDIRSAINSLQLSSSK 322 (634)
T ss_pred chhHHHHHHHHhcCccHHHHHhHhhhhccc
Confidence 6778999999999999999999988644
No 82
>PRK06893 DNA replication initiation factor; Validated
Probab=99.86 E-value=1.9e-20 Score=161.20 Aligned_cols=185 Identities=17% Similarity=0.278 Sum_probs=127.9
Q ss_pred CCCCCCCcccCHHH--HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccc
Q 018543 8 RPKTLDQVIVHQDI--AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (354)
Q Consensus 8 rP~~~~~~~g~~~~--~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (354)
+|.+|+++++++.. ...+.........|.++||||||+|||++++++++++.......
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~-------------------- 70 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTA-------------------- 70 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCe--------------------
Confidence 45699999976543 22333333333445589999999999999999999874332111
Q ss_pred ccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhccC-cee
Q 018543 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SCR 162 (354)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~-~~~ 162 (354)
..+....... ...+.++.+ .+.++++|||++.+. ...+..|+.+++.... +..
T Consensus 71 ---------~y~~~~~~~~----~~~~~~~~~-----------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~ 126 (229)
T PRK06893 71 ---------IYIPLSKSQY----FSPAVLENL-----------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKT 126 (229)
T ss_pred ---------EEeeHHHhhh----hhHHHHhhc-----------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCc
Confidence 1111100000 011112111 234799999999874 4456678887765432 333
Q ss_pred -EEEEecCCC----cccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543 163 -LILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (354)
Q Consensus 163 -~Il~~~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~ 234 (354)
+|++++... ...+.++||+. ++++++|+.++...+|++.+..+++.++++++++|++.++||+|.+++.|+.
T Consensus 127 illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 127 LLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred EEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 445555543 24589999986 8999999999999999999999999999999999999999999999999986
Q ss_pred HH
Q 018543 235 CR 236 (354)
Q Consensus 235 ~~ 236 (354)
+.
T Consensus 207 l~ 208 (229)
T PRK06893 207 LD 208 (229)
T ss_pred HH
Confidence 64
No 83
>PRK08727 hypothetical protein; Validated
Probab=99.86 E-value=5.3e-20 Score=158.75 Aligned_cols=183 Identities=21% Similarity=0.326 Sum_probs=130.2
Q ss_pred CCCCCcccC-HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 10 KTLDQVIVH-QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 10 ~~~~~~~g~-~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
.+|+++++. ......+...........++|+||+|+|||+++++++.++...+..
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~------------------------ 71 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRS------------------------ 71 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCc------------------------
Confidence 389998764 3444444444433322349999999999999999999876432211
Q ss_pred cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhc-cCceeEEE
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKY-SASCRLIL 165 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~-~~~~~~Il 165 (354)
...+...+.. ..+.+.++.+ .+..+|+|||++.+. +..+..++.+++.. ..+..+|+
T Consensus 72 -----~~y~~~~~~~----~~~~~~~~~l-----------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ 131 (233)
T PRK08727 72 -----SAYLPLQAAA----GRLRDALEAL-----------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLY 131 (233)
T ss_pred -----EEEEeHHHhh----hhHHHHHHHH-----------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 0111111100 0111222221 233799999999885 45667788887653 23456888
Q ss_pred EecCCC----cccHHHhhh---cceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543 166 CCNSSS----KVTEAIRSR---CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (354)
Q Consensus 166 ~~~~~~----~l~~~l~sR---~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~ 236 (354)
+++.+. .+.+.++|| |.++.|++|+.+++..+|++++..+++.++++++++|++.++||+|.+++.|+.+.
T Consensus 132 ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 132 TARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred ECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888654 357999999 78999999999999999999999899999999999999999999999999988664
No 84
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.85 E-value=1e-19 Score=176.80 Aligned_cols=215 Identities=22% Similarity=0.306 Sum_probs=143.0
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCC-------Cccccccccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKTWKID 76 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-------~~~~~~~~~~~~~~ 76 (354)
.+.|||.+|++++|+...++.+...+.....++++|+|||||||||+|+.+.+...... ...+.++|..+.
T Consensus 145 ~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-- 222 (615)
T TIGR02903 145 QSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-- 222 (615)
T ss_pred hhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc--
Confidence 46799999999999999998888888777777899999999999999999987542211 111222221110
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcC---CC-CCCCCCCceEEEEeCCCcCCHHHHHHHHH
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR---PI-DTKGKRGFKVLVLNEVDKLSREAQHSLRR 152 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~---~~-~~~~~~~~~viiiDE~d~l~~~~~~~Ll~ 152 (354)
+. ...+. ..-.+...........+.+.... +. .........++||||++.|+...|+.|++
T Consensus 223 ---------~d----~~~i~--~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 223 ---------WD----PREVT--NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLK 287 (615)
T ss_pred ---------CC----HHHHh--HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHH
Confidence 00 00000 00000000000000001111100 00 00011233699999999999999999999
Q ss_pred HHhhcc--------------------------CceeEEEE---ecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHH
Q 018543 153 TMEKYS--------------------------ASCRLILC---CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK 203 (354)
Q Consensus 153 ~le~~~--------------------------~~~~~Il~---~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~ 203 (354)
.|++.. ....++++ ++++..+.++++|||..+.|+|++.+++..++.+.+.
T Consensus 288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred HHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 997631 11224443 3345678999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543 204 KEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (354)
Q Consensus 204 ~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~ 236 (354)
+.++.+++++++.|++.+. +.|++++.|+.++
T Consensus 368 ~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~ 399 (615)
T TIGR02903 368 KINVHLAAGVEELIARYTI-EGRKAVNILADVY 399 (615)
T ss_pred HcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 8888899999999988764 7899999998664
No 85
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.84 E-value=1.4e-19 Score=156.15 Aligned_cols=182 Identities=18% Similarity=0.287 Sum_probs=134.4
Q ss_pred cCCCCCCCcc--cCHHHHHHHHHHHhcC-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 7 YRPKTLDQVI--VHQDIAQNLKKLVTEQ-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 7 yrP~~~~~~~--g~~~~~~~l~~~l~~~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
-+|.+|++++ ++..+...++.+.... ...+++|+||+|+|||+++++++++....+...+.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~---------------- 75 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARY---------------- 75 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE----------------
Confidence 3567899988 3577788888887643 33459999999999999999999976433322111
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce--
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC-- 161 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~-- 161 (354)
+.... ..+ .+.. ....++++|||+|.++...+..|+.+++....+.
T Consensus 76 -------------i~~~~--------~~~---~~~~--------~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~ 123 (227)
T PRK08903 76 -------------LDAAS--------PLL---AFDF--------DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQG 123 (227)
T ss_pred -------------EehHH--------hHH---HHhh--------cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCc
Confidence 11100 000 0100 1234799999999999989999999997654333
Q ss_pred eEEEEecCCC---cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543 162 RLILCCNSSS---KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235 (354)
Q Consensus 162 ~~Il~~~~~~---~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~ 235 (354)
.+|++++... .+.+.+.||+ ..++++||+.++...++.+.+.+.++.+++++++.+++.+.||+|.+.+.|+.+
T Consensus 124 ~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 124 ALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred EEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3455444332 4568899996 689999999999999999999899999999999999999999999999998875
Q ss_pred H
Q 018543 236 R 236 (354)
Q Consensus 236 ~ 236 (354)
.
T Consensus 204 ~ 204 (227)
T PRK08903 204 D 204 (227)
T ss_pred H
Confidence 4
No 86
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=1.6e-19 Score=159.83 Aligned_cols=187 Identities=18% Similarity=0.273 Sum_probs=129.3
Q ss_pred CcccCHHHHHHHHHHHh----------c-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543 14 QVIVHQDIAQNLKKLVT----------E-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~----------~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 78 (354)
+++|.+++++.+..++. . +...|++|+||||||||++|+++++.+...+..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~-------------- 89 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI-------------- 89 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC--------------
Confidence 68999999887776542 1 123459999999999999999999976432110
Q ss_pred CccccccccccccCceeeeCCCC-----CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---------CH
Q 018543 79 SRNIDLELTTLSSANHVELSPSD-----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SR 144 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~ 144 (354)
.....++++..+ .+... ...+++++. ....|+||||++.+ ..
T Consensus 90 -----------~~~~~~~v~~~~l~~~~~g~~~-~~~~~~l~~------------a~ggVLfIDE~~~l~~~~~~~~~~~ 145 (287)
T CHL00181 90 -----------KKGHLLTVTRDDLVGQYIGHTA-PKTKEVLKK------------AMGGVLFIDEAYYLYKPDNERDYGS 145 (287)
T ss_pred -----------CCCceEEecHHHHHHHHhccch-HHHHHHHHH------------ccCCEEEEEccchhccCCCccchHH
Confidence 000112222111 00000 112222221 12269999999986 46
Q ss_pred HHHHHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543 145 EAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (354)
Q Consensus 145 ~~~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~ 218 (354)
+.++.|++.|++...++++|++++... ...|+++|||. .|.|++++.+++..++...+.+.+..+++++...+.
T Consensus 146 e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~ 225 (287)
T CHL00181 146 EAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALL 225 (287)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHH
Confidence 788999999998777777666654322 33589999986 799999999999999999999999999988877666
Q ss_pred HH--------cCCCHHHHHHHHHHHHhc
Q 018543 219 EK--------SNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 219 ~~--------s~gd~R~ai~~L~~~~~~ 238 (354)
.. .-||.|.+.+.++.+...
T Consensus 226 ~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 226 DYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 63 348899999999877644
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.83 E-value=3.2e-19 Score=154.05 Aligned_cols=185 Identities=19% Similarity=0.323 Sum_probs=134.1
Q ss_pred CCCCCCCccc--CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccc
Q 018543 8 RPKTLDQVIV--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (354)
Q Consensus 8 rP~~~~~~~g--~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (354)
.|.+|+++++ +..+.+.++.++.....++++|+||+|||||++++.+++.........+.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~-------------- 75 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA-------------- 75 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH--------------
Confidence 3567899883 677889999998766666799999999999999999998764332111111111
Q ss_pred ccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH--HHHHHHHHHhhcc-Ccee
Q 018543 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHSLRRTMEKYS-ASCR 162 (354)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--~~~~Ll~~le~~~-~~~~ 162 (354)
.... ...+.+.. ..+..+++|||+|.++.. .++.|...++... .+..
T Consensus 76 ---------------~~~~----~~~~~~~~-----------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~ 125 (226)
T TIGR03420 76 ---------------ELAQ----ADPEVLEG-----------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGR 125 (226)
T ss_pred ---------------HHHH----hHHHHHhh-----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCe
Confidence 0000 00111111 122369999999999763 4788888876532 2346
Q ss_pred EEEEecCCC-c--cc-HHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543 163 LILCCNSSS-K--VT-EAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235 (354)
Q Consensus 163 ~Il~~~~~~-~--l~-~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~ 235 (354)
+|++++... . .. +.+.+|+ ..+.+++++.++...++++.+.+.++.+++++++.|++.+.||+|.+.+.++.+
T Consensus 126 iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 126 LLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred EEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 777776543 2 33 7889887 479999999999999999988888999999999999999999999999998754
Q ss_pred H
Q 018543 236 R 236 (354)
Q Consensus 236 ~ 236 (354)
-
T Consensus 206 ~ 206 (226)
T TIGR03420 206 D 206 (226)
T ss_pred H
Confidence 3
No 88
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.82 E-value=1.6e-19 Score=150.35 Aligned_cols=179 Identities=25% Similarity=0.376 Sum_probs=126.9
Q ss_pred cCCCCCCCcccCHHHHHHHHHHH---hc------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543 7 YRPKTLDQVIVHQDIAQNLKKLV---TE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (354)
Q Consensus 7 yrP~~~~~~~g~~~~~~~l~~~l---~~------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 77 (354)
.+..+|+|++||+++++..+-.+ ++ ..+.++|||||||||||.+|+++|++...+-
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~--------------- 179 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL--------------- 179 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce---------------
Confidence 44568999999999986555433 32 2344699999999999999999998752111
Q ss_pred CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------------HH
Q 018543 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------RE 145 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------------~~ 145 (354)
-.+... ++.....| .....++++........ +.|+||||.|.+. .+
T Consensus 180 ---------l~vkat---~liGehVG-dgar~Ihely~rA~~~a---------PcivFiDE~DAiaLdRryQelRGDVsE 237 (368)
T COG1223 180 ---------LLVKAT---ELIGEHVG-DGARRIHELYERARKAA---------PCIVFIDELDAIALDRRYQELRGDVSE 237 (368)
T ss_pred ---------EEechH---HHHHHHhh-hHHHHHHHHHHHHHhcC---------CeEEEehhhhhhhhhhhHHHhcccHHH
Confidence 000000 01111111 11224666665555443 4899999998763 24
Q ss_pred HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Q 018543 146 AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN 222 (354)
Q Consensus 146 ~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~ 222 (354)
..|+|+.-|+.. ..++.+|..||+++-+.++++||+. .|+|.-|++++...+|+..+++.-++++.. ++.+++.+.
T Consensus 238 iVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~ 316 (368)
T COG1223 238 IVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTK 316 (368)
T ss_pred HHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhC
Confidence 678888888543 3568899999999999999999996 699999999999999999998877776654 788888776
Q ss_pred C
Q 018543 223 R 223 (354)
Q Consensus 223 g 223 (354)
|
T Consensus 317 g 317 (368)
T COG1223 317 G 317 (368)
T ss_pred C
Confidence 6
No 89
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=2.3e-18 Score=143.46 Aligned_cols=180 Identities=11% Similarity=0.121 Sum_probs=135.9
Q ss_pred HHHHHHHhcCCCCe-EEEeCCCC-CcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543 23 QNLKKLVTEQDCPH-LLFYGPPG-SGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (354)
Q Consensus 23 ~~l~~~l~~~~~~~-~ll~Gp~G-~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (354)
..|.+.++.+++.| +||.|..+ +||..++..++..+.|... ....+++...+.++
T Consensus 3 ~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i-----------------------~~~~HPD~~~I~pe 59 (263)
T PRK06581 3 ERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSI-----------------------PLENNPDYHFIARE 59 (263)
T ss_pred HHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCc-----------------------ccCCCCCEEEEecc
Confidence 46788899999999 99999998 9999999999987766421 11123334444443
Q ss_pred CC-----CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543 101 DA-----GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (354)
Q Consensus 101 ~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 175 (354)
.. .......+|++.+.+...+. .+++||++|+++|.|+.+++|+|++++|+||+++.||++|+++.++++
T Consensus 60 ~~~~~~~~~I~IdqIReL~~~l~~~p~-----~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLp 134 (263)
T PRK06581 60 TSATSNAKNISIEQIRKLQDFLSKTSA-----ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIIS 134 (263)
T ss_pred ccccccCCcccHHHHHHHHHHHhhCcc-----cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCch
Confidence 21 22334568887776655443 578899999999999999999999999999999999999999999999
Q ss_pred HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
+|+|||+.++|+.|......++....+.- ..+...++.|.+...-|....+...|
T Consensus 135 TIrSRCq~i~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~ 189 (263)
T PRK06581 135 TIRSRCFKINVRSSILHAYNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFID 189 (263)
T ss_pred hHhhceEEEeCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999998877777654322 22345577777776656555444444
No 90
>PRK06620 hypothetical protein; Validated
Probab=99.81 E-value=1.7e-18 Score=146.83 Aligned_cols=167 Identities=18% Similarity=0.203 Sum_probs=118.2
Q ss_pred CCCCccc---CHHHHHHHHHHHhc-CC-C--CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 11 TLDQVIV---HQDIAQNLKKLVTE-QD-C--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 11 ~~~~~~g---~~~~~~~l~~~l~~-~~-~--~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+|++++. +..+...++.|.+. +. . +.++||||||+||||+++++++.... .
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----------~----------- 71 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----------Y----------- 71 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----------E-----------
Confidence 5677653 56678888888763 22 2 34999999999999999998764300 0
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-Ccee
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASCR 162 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-~~~~ 162 (354)
+... ... .. .+. ....+++|||+|.+.. ..|..+++... .+..
T Consensus 72 -------------~~~~-~~~-----~~----~~~----------~~~d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ 115 (214)
T PRK06620 72 -------------IIKD-IFF-----NE----EIL----------EKYNAFIIEDIENWQE---PALLHIFNIINEKQKY 115 (214)
T ss_pred -------------Ecch-hhh-----ch----hHH----------hcCCEEEEeccccchH---HHHHHHHHHHHhcCCE
Confidence 0000 000 00 010 1236899999997743 24444443221 2234
Q ss_pred EEEEecCCC---cccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543 163 LILCCNSSS---KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (354)
Q Consensus 163 ~Il~~~~~~---~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~ 236 (354)
++++++.+. .+ +.++||+. ++.+++|+.+++..++++.+...++.++++++++|++.+.||+|.+++.|+.+.
T Consensus 116 ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 116 LLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred EEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 555555443 35 89999987 899999999999999999999889999999999999999999999999998764
No 91
>PRK05907 hypothetical protein; Provisional
Probab=99.81 E-value=6.2e-17 Score=144.23 Aligned_cols=270 Identities=14% Similarity=0.196 Sum_probs=202.3
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
..+...+++|+ |.++++|..- ....+.+...+..++. ..+++.
T Consensus 8 ~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~--~~fdg~------------------------------- 50 (311)
T PRK05907 8 KDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK--SEFDGQ------------------------------- 50 (311)
T ss_pred HHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc--ceecCC-------------------------------
Confidence 44555677888 8899999987 4556666555533321 111111
Q ss_pred CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC---cccHHHhh
Q 018543 103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIRS 179 (354)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~s 179 (354)
. ..+.+++..+.+. |+ .+++++|++.+++.++....+.|.+++++|++.+.+|+.+...+ ++...+..
T Consensus 51 -~---~~~~~ii~~aetl-Pf----FaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~k 121 (311)
T PRK05907 51 -G---LLQQELLSWTEHF-GL----FASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLSS 121 (311)
T ss_pred -C---CCHHHHHHHHhcC-Cc----ccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHhh
Confidence 1 1255666655444 43 47789999988887776677899999999988766663333222 12333432
Q ss_pred hccee----eecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc---CCCCCCCC--CCC
Q 018543 180 RCLNI----RINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ---QYPFKDNQ--AIP 249 (354)
Q Consensus 180 R~~~i----~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~---~~~~~~~~--~~~ 249 (354)
...+ .|+++...++..|+.+++++.|..+++++++.+++.+ +||+..+.+.++.++.. +..++.++ .++
T Consensus 122 -~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv 200 (311)
T PRK05907 122 -ALCLSLFGEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFV 200 (311)
T ss_pred -cceeccccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHh
Confidence 4444 8999999999999999999999999999999999999 69999999999998776 23566555 456
Q ss_pred CCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHH--------------h----CCHHHH
Q 018543 250 AMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLN-CVPPVVVLKRLLYELLK--------------R----LDAEIK 310 (354)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~il~~l~~~~~~--------------~----~~~~~~ 310 (354)
....+..+|++++++.. ++..++.+.+++|+.+ |.+|..|+..+.++++= . ++.+.+
T Consensus 201 ~~s~e~nIF~L~dai~~----~~~~~Al~il~~Ll~~~ge~p~~ILall~rQfl~~~k~l~~~g~~~~~p~~vafs~~~L 276 (311)
T PRK05907 201 VKKEAASLWKLRDALLR----RDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQCLYGLRSIEEQSKERKHRIFVAYGKERL 276 (311)
T ss_pred cCcccccHHHHHHHHHc----cCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECHHHH
Confidence 67788999999999998 7888999999999999 99999998887776521 1 344567
Q ss_pred HHHHHHHHHHhhHhhCCC-ChhHhHHHHHHHHHH
Q 018543 311 HEVCHWAAYYEHKMRRGN-KAIFHLEAFVAKFMS 343 (354)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~-~~~l~l~~~i~~~~~ 343 (354)
.+.+..+.+.|..+++|. ++.+.+|.|+.+++.
T Consensus 277 ~~~~~~l~~~D~~iKtg~~d~~~~lElli~~~~~ 310 (311)
T PRK05907 277 LQALNLLFYAESLIKNNVQDPILAVETLVIRMTN 310 (311)
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 889999999999999876 458889999998763
No 92
>PRK05642 DNA replication initiation factor; Validated
Probab=99.81 E-value=3.3e-18 Score=147.59 Aligned_cols=183 Identities=16% Similarity=0.265 Sum_probs=127.9
Q ss_pred CCCCCcc-c-CHHHHHHHHHHHhc--C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543 10 KTLDQVI-V-HQDIAQNLKKLVTE--Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (354)
Q Consensus 10 ~~~~~~~-g-~~~~~~~l~~~l~~--~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (354)
-+|++++ | +..+.+.++.+.+. + ..++++|+||+|+|||++++++++++...+...
T Consensus 16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v------------------- 76 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPA------------------- 76 (234)
T ss_pred ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcE-------------------
Confidence 3899987 3 34445556555443 1 124599999999999999999998764322111
Q ss_pred cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhccC-ce
Q 018543 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SC 161 (354)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~-~~ 161 (354)
+.+...+... ....+++.+. +..+++|||++.+. +..+..|+.+++.... +.
T Consensus 77 ----------~y~~~~~~~~----~~~~~~~~~~-----------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~ 131 (234)
T PRK05642 77 ----------VYLPLAELLD----RGPELLDNLE-----------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGR 131 (234)
T ss_pred ----------EEeeHHHHHh----hhHHHHHhhh-----------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCC
Confidence 1111111000 0111222211 23689999998774 4556779998876443 45
Q ss_pred eEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543 162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (354)
Q Consensus 162 ~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~ 234 (354)
.+|++++.+. ...+.++||+ .++.+.+|+.++...+++..+...++.++++++++|++.+.||+|.+.+.|+.
T Consensus 132 ~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 132 RLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred EEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6677666543 3469999998 78999999999999999988888899999999999999999999999999886
Q ss_pred HH
Q 018543 235 CR 236 (354)
Q Consensus 235 ~~ 236 (354)
+-
T Consensus 212 l~ 213 (234)
T PRK05642 212 LD 213 (234)
T ss_pred HH
Confidence 63
No 93
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=2e-18 Score=152.94 Aligned_cols=187 Identities=18% Similarity=0.276 Sum_probs=130.6
Q ss_pred CcccCHHHHHHHHHHHh----------cC-----CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543 14 QVIVHQDIAQNLKKLVT----------EQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~----------~~-----~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 78 (354)
+++|.+++++.+..++. .| ...|++|+||||||||++|+++++.+...+...
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~------------- 89 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR------------- 89 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc-------------
Confidence 58999888887766432 12 112699999999999999999999774322100
Q ss_pred CccccccccccccCceeeeCCCC-----CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---------CH
Q 018543 79 SRNIDLELTTLSSANHVELSPSD-----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SR 144 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~ 144 (354)
....+.++..+ .+. ....+++.++. . ...++||||++.| ..
T Consensus 90 ------------~~~~v~v~~~~l~~~~~g~-~~~~~~~~~~~---a---------~~gvL~iDEi~~L~~~~~~~~~~~ 144 (284)
T TIGR02880 90 ------------KGHLVSVTRDDLVGQYIGH-TAPKTKEILKR---A---------MGGVLFIDEAYYLYRPDNERDYGQ 144 (284)
T ss_pred ------------cceEEEecHHHHhHhhccc-chHHHHHHHHH---c---------cCcEEEEechhhhccCCCccchHH
Confidence 00011111100 010 00122333322 1 1269999999977 35
Q ss_pred HHHHHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543 145 EAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (354)
Q Consensus 145 ~~~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~ 218 (354)
+.++.|++.|+....++++|++++... .+.|+++|||. .|+|++++.+++..++.+.+.+.+..+++++++.+.
T Consensus 145 ~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~ 224 (284)
T TIGR02880 145 EAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFA 224 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 678899999998776777666655431 35699999995 799999999999999999999988899999988887
Q ss_pred HH--------cCCCHHHHHHHHHHHHhc
Q 018543 219 EK--------SNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 219 ~~--------s~gd~R~ai~~L~~~~~~ 238 (354)
.+ ..||+|.+.|.++.+...
T Consensus 225 ~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 225 DYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 75 459999999999977654
No 94
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.80 E-value=1.9e-18 Score=166.50 Aligned_cols=215 Identities=13% Similarity=0.191 Sum_probs=137.0
Q ss_pred cccCCCCCCCcccCHHHHHHHHHHHh----cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCC-------Cccccccccc
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLKKLVT----EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKT 72 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~~~l~----~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~-------~~~~~~~~~~ 72 (354)
.-|.| +.+.|.++-.+.|...+. .....+ ++++||||||||++++.+.+++.... ...++++|..
T Consensus 750 ~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 750 LDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred cccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 34677 677888777666655554 333334 57999999999999999998774211 1223344332
Q ss_pred ccccCCCccccccccccccCcee-eeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHH
Q 018543 73 WKIDAGSRNIDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLR 151 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll 151 (354)
+. .+.. .+..+. ..+ ...+ ..+......+..++..... ......||||||+|.|....++.|+
T Consensus 827 Ls--tp~s----IYqvI~--qqL~g~~P-~~GlsS~evLerLF~~L~k-------~~r~v~IIILDEID~L~kK~QDVLY 890 (1164)
T PTZ00112 827 VV--HPNA----AYQVLY--KQLFNKKP-PNALNSFKILDRLFNQNKK-------DNRNVSILIIDEIDYLITKTQKVLF 890 (1164)
T ss_pred cC--CHHH----HHHHHH--HHHcCCCC-CccccHHHHHHHHHhhhhc-------ccccceEEEeehHhhhCccHHHHHH
Confidence 11 0000 000000 000 0011 1111111122222222111 1123469999999999877788888
Q ss_pred HHHhhc---cCceeEEEEecCC---CcccHHHhhhcc--eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---H
Q 018543 152 RTMEKY---SASCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE---K 220 (354)
Q Consensus 152 ~~le~~---~~~~~~Il~~~~~---~~l~~~l~sR~~--~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~---~ 220 (354)
.+++.+ .....+|+++|+. ..+.+.++||+. .+.|+|++.+++..+|..++......+++++++.+|+ .
T Consensus 891 nLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 891 TLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred HHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 877643 2346677788764 467889999986 4999999999999999999886545689999999998 6
Q ss_pred cCCCHHHHHHHHHHHHhc
Q 018543 221 SNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 221 s~gd~R~ai~~L~~~~~~ 238 (354)
..||+|+|+.+|..++..
T Consensus 971 ~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFEN 988 (1164)
T ss_pred cCCHHHHHHHHHHHHHhh
Confidence 789999999999988753
No 95
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.1e-19 Score=152.42 Aligned_cols=182 Identities=20% Similarity=0.310 Sum_probs=131.0
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
+++-.-.+++|+-|-++.++.++..++- | .+|. +|||||||||||.+|+++|++..+ ..+.+.+
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A---tFIrvvg 218 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA---TFIRVVG 218 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc---eEEEecc
Confidence 4444556899999999999999998852 3 2333 999999999999999999986421 1222222
Q ss_pred ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC--------
Q 018543 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-------- 142 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-------- 142 (354)
..+. -.|.. ...-.+|+++...... .+.||||||+|.+
T Consensus 219 SElV--------------------qKYiG-----EGaRlVRelF~lArek---------aPsIIFiDEIDAIg~kR~d~~ 264 (406)
T COG1222 219 SELV--------------------QKYIG-----EGARLVRELFELAREK---------APSIIFIDEIDAIGAKRFDSG 264 (406)
T ss_pred HHHH--------------------HHHhc-----cchHHHHHHHHHHhhc---------CCeEEEEechhhhhcccccCC
Confidence 1111 00111 1112478887665543 3489999999987
Q ss_pred ---CHHHHHHHHHHHhh-----ccCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543 143 ---SREAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (354)
Q Consensus 143 ---~~~~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~ 211 (354)
+.+.|..|+.+|.+ +..++++|++||.++-+.|+|.+-. ..|+|+.|+.+...++++-+..+.++. ++
T Consensus 265 t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~d 343 (406)
T COG1222 265 TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DD 343 (406)
T ss_pred CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cC
Confidence 35688888888865 4578999999999999999999854 369999999999999999988876653 12
Q ss_pred HHHHHHHHHcCC
Q 018543 212 GFATRLAEKSNR 223 (354)
Q Consensus 212 ~~l~~i~~~s~g 223 (354)
-.++.|+..+.|
T Consensus 344 vd~e~la~~~~g 355 (406)
T COG1222 344 VDLELLARLTEG 355 (406)
T ss_pred cCHHHHHHhcCC
Confidence 236777776655
No 96
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=1.8e-18 Score=172.39 Aligned_cols=202 Identities=18% Similarity=0.227 Sum_probs=146.5
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++.||.++++++|+++.+..+...+..+..++++|+||||||||++++.+|+.+..........+..
T Consensus 172 l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~----------- 240 (731)
T TIGR02639 172 LTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAK----------- 240 (731)
T ss_pred HHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCe-----------
Confidence 567889999999999999999888888888777899999999999999999999874332111000111
Q ss_pred cccccccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------HHHH
Q 018543 83 DLELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQ 147 (354)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~ 147 (354)
.+.++.. .+.......++++++++... .+.|+||||+|.+. .+++
T Consensus 241 -----------~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~---------~~~ILfiDEih~l~~~g~~~~~~~~~~ 300 (731)
T TIGR02639 241 -----------IYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE---------PNAILFIDEIHTIVGAGATSGGSMDAS 300 (731)
T ss_pred -----------EEEecHHHHhhhccccchHHHHHHHHHHHHhcc---------CCeEEEEecHHHHhccCCCCCccHHHH
Confidence 1111111 01111112455555544321 24799999999884 3457
Q ss_pred HHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHH
Q 018543 148 HSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLA 218 (354)
Q Consensus 148 ~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~ 218 (354)
+.|+..++. ....+|.+||..+ ...+++.+||+.|.+++|+.++...+|+..... .++.++++++..++
T Consensus 301 ~~L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~ 378 (731)
T TIGR02639 301 NLLKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAV 378 (731)
T ss_pred HHHHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHH
Confidence 778887774 4577788777532 578899999999999999999999999977654 35789999999999
Q ss_pred HHcCC---C---HHHHHHHHHHHHh
Q 018543 219 EKSNR---S---LRRAILSFETCRV 237 (354)
Q Consensus 219 ~~s~g---d---~R~ai~~L~~~~~ 237 (354)
..+.+ + +++|+.+++.++.
T Consensus 379 ~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 379 ELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred HhhhcccccccCCHHHHHHHHHhhh
Confidence 98754 2 7889999997765
No 97
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.78 E-value=1.2e-17 Score=156.12 Aligned_cols=190 Identities=15% Similarity=0.244 Sum_probs=131.2
Q ss_pred CCCCcc-c--CHHHHHHHHHHHhc-----C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 11 TLDQVI-V--HQDIAQNLKKLVTE-----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 11 ~~~~~~-g--~~~~~~~l~~~l~~-----~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+|++++ | +..+....+.+.+. + ...+++||||+|+|||++++++++++...+...+++....+.
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~------- 181 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT------- 181 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH-------
Confidence 788887 4 34344566666542 2 223499999999999999999999875432221111111000
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHH-HHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhc-
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQE-VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKY- 157 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~- 157 (354)
..-...++. ....+... ....++++|||++.+. ...++.|+.++...
T Consensus 182 ----------------------~~~~~~l~~~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~ 232 (445)
T PRK12422 182 ----------------------EHLVSAIRSGEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH 232 (445)
T ss_pred ----------------------HHHHHHHhcchHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHH
Confidence 000000000 00011111 1244799999999885 34677888877543
Q ss_pred cCceeEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Q 018543 158 SASCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230 (354)
Q Consensus 158 ~~~~~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~ 230 (354)
..+..+|++++.+. .+.+.++||+ .++.+++|+.+++..+|++.+...++.++++++++|+....+|+|++++
T Consensus 233 ~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g 312 (445)
T PRK12422 233 TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLH 312 (445)
T ss_pred HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHH
Confidence 23467888887653 5678999998 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 018543 231 SFETCR 236 (354)
Q Consensus 231 ~L~~~~ 236 (354)
.|+.++
T Consensus 313 ~l~~l~ 318 (445)
T PRK12422 313 ALTLLA 318 (445)
T ss_pred HHHHHH
Confidence 999875
No 98
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.78 E-value=9.5e-18 Score=168.31 Aligned_cols=203 Identities=16% Similarity=0.241 Sum_probs=145.1
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+++.||.++++++|+++.++.+...+..+..++.+|+||||||||++++.+|+.+....... .+
T Consensus 178 ~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~-~l--------------- 241 (852)
T TIGR03345 178 TAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPP-AL--------------- 241 (852)
T ss_pred HHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCc-cc---------------
Confidence 56789999999999999988888888788888899999999999999999999874322110 00
Q ss_pred ccccccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHHH
Q 018543 84 LELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHS 149 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~ 149 (354)
.....+.+... .....-...++.+++++... +.+.|+||||+|.+.. ++.+.
T Consensus 242 ------~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~--------~~~~ILfIDEih~l~~~g~~~~~~d~~n~ 307 (852)
T TIGR03345 242 ------RNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS--------PQPIILFIDEAHTLIGAGGQAGQGDAANL 307 (852)
T ss_pred ------cCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc--------CCCeEEEEeChHHhccCCCccccccHHHH
Confidence 00111111111 11111113466666655432 2347999999999853 23345
Q ss_pred HHHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH
Q 018543 150 LRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEK 220 (354)
Q Consensus 150 Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~ 220 (354)
|+..++. +...+|.+|+..+ ...++|.+||+.|.+++|+.++...+|+..... .++.++++++..++..
T Consensus 308 Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 308 LKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVEL 385 (852)
T ss_pred hhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHH
Confidence 7777765 4577777777542 588999999999999999999999997665543 4688999999999998
Q ss_pred cCCC------HHHHHHHHHHHHhc
Q 018543 221 SNRS------LRRAILSFETCRVQ 238 (354)
Q Consensus 221 s~gd------~R~ai~~L~~~~~~ 238 (354)
+.+- +.+||.+|+.+|..
T Consensus 386 s~ryi~~r~LPDKAIdlldea~a~ 409 (852)
T TIGR03345 386 SHRYIPGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred cccccccccCccHHHHHHHHHHHH
Confidence 8653 56899999977653
No 99
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.77 E-value=4.1e-17 Score=153.18 Aligned_cols=193 Identities=12% Similarity=0.181 Sum_probs=131.1
Q ss_pred CCCCCCcc-c--CHHHHHHHHHHHhc-CC-CCeEEEeCCCCCcHHHHHHHHHHHhcCCC--CcccccccccccccCCCcc
Q 018543 9 PKTLDQVI-V--HQDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 9 P~~~~~~~-g--~~~~~~~l~~~l~~-~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 81 (354)
+.+|+.++ | +..+......+.+. |. .++++||||+|+|||++++++++++.... ...+++....+.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~------- 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA------- 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-------
Confidence 46888887 3 33355556666553 32 23499999999999999999999774321 111111111110
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHH---HHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhh
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQ---EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEK 156 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~ 156 (354)
..-...++ +.+..+... -....+++|||++.+. ...++.|+.++..
T Consensus 184 ----------------------~~~~~~l~~~~~~~~~~~~~-------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~ 234 (450)
T PRK14087 184 ----------------------RKAVDILQKTHKEIEQFKNE-------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNN 234 (450)
T ss_pred ----------------------HHHHHHHHHhhhHHHHHHHH-------hccCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence 00000000 011111111 1234799999999886 5678888888865
Q ss_pred cc-CceeEEEEecCCC----cccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Q 018543 157 YS-ASCRLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGL--QLPSGFATRLAEKSNRSLR 226 (354)
Q Consensus 157 ~~-~~~~~Il~~~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~--~i~~~~l~~i~~~s~gd~R 226 (354)
.. .+..+|++++.+. .+.+.++||+. ++.+++|+.+++..+|++.+...|+ .++++++++|++.++||+|
T Consensus 235 ~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R 314 (450)
T PRK14087 235 FIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVR 314 (450)
T ss_pred HHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHH
Confidence 43 3346777777654 46688999974 7999999999999999999998885 6999999999999999999
Q ss_pred HHHHHHHHHHh
Q 018543 227 RAILSFETCRV 237 (354)
Q Consensus 227 ~ai~~L~~~~~ 237 (354)
.+.+.|..+..
T Consensus 315 ~L~gaL~~l~~ 325 (450)
T PRK14087 315 KIKGSVSRLNF 325 (450)
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 100
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.77 E-value=3.1e-17 Score=151.93 Aligned_cols=218 Identities=18% Similarity=0.234 Sum_probs=129.8
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhc----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC------cccccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA------EKVKVENKTW 73 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~------~~~~~~~~~~ 73 (354)
-..|.| ++++|+++..+.|..++.. +..++++++||||+|||++++.+++.+..... ..+++++...
T Consensus 9 ~~~~~p---~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 9 EPDYVP---DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCC---CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 467888 4789998888777777653 44456999999999999999999987743211 1122222111
Q ss_pred cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH---HHHH
Q 018543 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA---QHSL 150 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~---~~~L 150 (354)
. .+..-...-+..+.. ........+.......+.+.+.+.. .+++.||||||+|.+.... ...|
T Consensus 86 ~--~~~~~~~~i~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlvIDE~d~L~~~~~~~L~~l 152 (365)
T TIGR02928 86 D--TLYQVLVELANQLRG---SGEEVPTTGLSTSEVFRRLYKELNE--------RGDSLIIVLDEIDYLVGDDDDLLYQL 152 (365)
T ss_pred C--CHHHHHHHHHHHHhh---cCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEECchhhhccCCcHHHHhH
Confidence 0 000000000000000 0000000111111112222222211 2345789999999995322 2334
Q ss_pred HHH--Hhhcc-CceeEEEEecCCC---cccHHHhhhcc--eeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH-
Q 018543 151 RRT--MEKYS-ASCRLILCCNSSS---KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAE- 219 (354)
Q Consensus 151 l~~--le~~~-~~~~~Il~~~~~~---~l~~~l~sR~~--~i~~~~~~~~~~~~~L~~~~~~--~~~~i~~~~l~~i~~- 219 (354)
++. ..+.+ .++.+|+++|+++ .+.+.+.||+. .+.|+|++.+++..++..++.. .+..+++++++.++.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 443 22222 4577899998875 57788899984 7999999999999999998863 233477887766544
Q ss_pred --HcCCCHHHHHHHHHHHHh
Q 018543 220 --KSNRSLRRAILSFETCRV 237 (354)
Q Consensus 220 --~s~gd~R~ai~~L~~~~~ 237 (354)
.+.||+|.++++++.++.
T Consensus 233 ~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 233 AAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 557999999999987653
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.77 E-value=1.5e-17 Score=141.76 Aligned_cols=192 Identities=21% Similarity=0.355 Sum_probs=125.9
Q ss_pred CCCCcc-c--CHHHHHHHHHHHhcCC--CCeEEEeCCCCCcHHHHHHHHHHHhcCC--CCcccccccccccccCCCcccc
Q 018543 11 TLDQVI-V--HQDIAQNLKKLVTEQD--CPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 11 ~~~~~~-g--~~~~~~~l~~~l~~~~--~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
||+.++ | ++.+....+...+... .+.++||||+|+|||++++++++++... +...++++...|.
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~--------- 76 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI--------- 76 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH---------
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH---------
Confidence 789986 4 5666776666665422 2349999999999999999999987432 2111222221111
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH--HHHHHHHHHhhc-cCc
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHSLRRTMEKY-SAS 160 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--~~~~Ll~~le~~-~~~ 160 (354)
..+ ..... ...+.++.+.+ ...++++||+++.+... .+..|..+++.. ..+
T Consensus 77 ~~~--------~~~~~-------~~~~~~~~~~~-----------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~ 130 (219)
T PF00308_consen 77 REF--------ADALR-------DGEIEEFKDRL-----------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG 130 (219)
T ss_dssp HHH--------HHHHH-------TTSHHHHHHHH-----------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHH--------HHHHH-------cccchhhhhhh-----------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC
Confidence 000 00000 00011121111 23489999999998644 588899888764 345
Q ss_pred eeEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 161 CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 161 ~~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
..+|++++.+. .+.+.++||+ .++.+.+|+.++...+|++.+...|+.++++++++|++...+|+|.....|+
T Consensus 131 k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 131 KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 67888886553 4678999996 4799999999999999999999999999999999999999999999999988
Q ss_pred HHHh
Q 018543 234 TCRV 237 (354)
Q Consensus 234 ~~~~ 237 (354)
.+.+
T Consensus 211 ~l~~ 214 (219)
T PF00308_consen 211 RLDA 214 (219)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 102
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.77 E-value=5e-16 Score=141.45 Aligned_cols=270 Identities=18% Similarity=0.215 Sum_probs=194.2
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHH
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI 114 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~ 114 (354)
|.++|||+...-+...++.+.+.+..++.... . ...+... +...+.+++
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~f-------n-------------------~~~~d~~-----~~~~~~~~~ 50 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSF-------N-------------------YSRLDGD-----DADQAIQAL 50 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhc-------c-------------------hhhcCCc-----cchHHHHHH
Confidence 56999999998888888888876643321110 0 0111111 111244555
Q ss_pred HHHHhcCCCCCCCCCCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEEEEecC-CC---cccHHHhhhcceeeec
Q 018543 115 KEMAKNRPIDTKGKRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNS-SS---KVTEAIRSRCLNIRIN 187 (354)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~-~~---~l~~~l~sR~~~i~~~ 187 (354)
..+ .+.|+ .+++++|++++++.+ +.+..+.|.++++.+++++.+|+++.. .+ +....+...+.+..|.
T Consensus 51 ~~~-~t~pf----f~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~ 125 (326)
T PRK07452 51 NEA-MTPPF----GSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFS 125 (326)
T ss_pred HHh-cCCCC----CCCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEec
Confidence 443 33343 467899999998654 567888999999998888888886543 22 4566777788888886
Q ss_pred CC---CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--C--CCCCCCC--CCCCCCHHHHHH
Q 018543 188 SP---TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ--Q--YPFKDNQ--AIPAMDWEEFVF 258 (354)
Q Consensus 188 ~~---~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~--~--~~~~~~~--~~~~~~~~~~~~ 258 (354)
++ +.+++..|+...+.+.|+.+++++++.+++..++|++.+.+.++.++.. + ..++.++ .++.. .+..++
T Consensus 126 ~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~-~~~~if 204 (326)
T PRK07452 126 LIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSN-TTQNSL 204 (326)
T ss_pred CCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcc-CcCcHH
Confidence 65 4577999999999999999999999999999999999999999998876 2 2566655 22222 346788
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----------------------------------
Q 018543 259 EIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----------------------------------- 303 (354)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~----------------------------------- 303 (354)
+++++++. ++..++...+.+++..|++|..|+..+.+++..
T Consensus 205 ~l~dai~~----~~~~~A~~~l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~ 280 (326)
T PRK07452 205 QLADALLQ----GNTGKALALLDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRK 280 (326)
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHH
Confidence 99999987 677778788888888899888776544333221
Q ss_pred ---hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 304 ---RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 304 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
+++.+....++..+.+.+..++.|..+...||.++.+++..+
T Consensus 281 ~~~~~s~~~L~~~l~~L~~~D~~iK~g~~~~~~le~~i~~~~~~~ 325 (326)
T PRK07452 281 EVQGLSSQQLLKLLPLLLDLEASLKQGANPINALQDKLIELCQLL 325 (326)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 233334556778888899999999888889999999888653
No 103
>PRK09087 hypothetical protein; Validated
Probab=99.77 E-value=1.6e-17 Score=142.10 Aligned_cols=170 Identities=15% Similarity=0.202 Sum_probs=123.0
Q ss_pred CCCCccc---CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543 11 TLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 11 ~~~~~~g---~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
+|++++. +..+...+.++.. ...+.++|+||+|+||||++++++... +.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~~-~~~~~l~l~G~~GsGKThLl~~~~~~~-----~~---------------------- 70 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWPN-WPSPVVVLAGPVGSGKTHLASIWREKS-----DA---------------------- 70 (226)
T ss_pred ChhceeecCchHHHHHHHHhccc-CCCCeEEEECCCCCCHHHHHHHHHHhc-----CC----------------------
Confidence 7999884 5667777776553 223459999999999999999988642 00
Q ss_pred ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC-ceeEEEE
Q 018543 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-SCRLILC 166 (354)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~-~~~~Il~ 166 (354)
..+..... ..+.+... ...+++|||++.+. ..+.+|+.++..... +..+|++
T Consensus 71 -------~~i~~~~~-------~~~~~~~~------------~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilit 123 (226)
T PRK09087 71 -------LLIHPNEI-------GSDAANAA------------AEGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMT 123 (226)
T ss_pred -------EEecHHHc-------chHHHHhh------------hcCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEE
Confidence 00100000 01111110 11579999999874 335678888855433 4567776
Q ss_pred ecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543 167 CNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235 (354)
Q Consensus 167 ~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~ 235 (354)
++.+. ...+.++||+ .++++++|+.+++..+|++.++..++.++++++++|++.+.||+|.++..++.+
T Consensus 124 s~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 124 SRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred CCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 76544 2478999998 799999999999999999999999999999999999999999999999876654
No 104
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=4.9e-17 Score=152.49 Aligned_cols=193 Identities=18% Similarity=0.249 Sum_probs=128.2
Q ss_pred CCCCcc-c--CHHHHHHHHHHHhc-CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc--ccccccccccccCCCccccc
Q 018543 11 TLDQVI-V--HQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNIDL 84 (354)
Q Consensus 11 ~~~~~~-g--~~~~~~~l~~~l~~-~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 84 (354)
+|++++ | +..+......+..+ +..++++||||+|+|||++++++++++....++ .+++++..|.
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~---------- 172 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL---------- 172 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH----------
Confidence 788887 4 33344555555543 334459999999999999999999987543211 1111111110
Q ss_pred cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhcc-Cce
Q 018543 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYS-ASC 161 (354)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~-~~~ 161 (354)
-++.. .... ....++.+.+. .+.++++|||++.+. ...+..|+.++.... .+.
T Consensus 173 ----------~~~~~-~~~~---~~~~~f~~~~~----------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k 228 (440)
T PRK14088 173 ----------NDLVD-SMKE---GKLNEFREKYR----------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK 228 (440)
T ss_pred ----------HHHHH-HHhc---ccHHHHHHHHH----------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC
Confidence 00000 0000 00111111111 134799999999773 335677888775543 334
Q ss_pred eEEEEecCCC----cccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543 162 RLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (354)
Q Consensus 162 ~~Il~~~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~ 234 (354)
.+|+++++.. .+.+.++||+. ++.+++|+.+.+..+|++.+..+++.++++++++|++.+.||+|.+...|..
T Consensus 229 ~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~ 308 (440)
T PRK14088 229 QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIK 308 (440)
T ss_pred eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHH
Confidence 5666665443 46688999986 8999999999999999999999999999999999999999999998888776
Q ss_pred HHh
Q 018543 235 CRV 237 (354)
Q Consensus 235 ~~~ 237 (354)
+..
T Consensus 309 l~~ 311 (440)
T PRK14088 309 LLV 311 (440)
T ss_pred HHH
Confidence 543
No 105
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.75 E-value=4.8e-17 Score=153.98 Aligned_cols=192 Identities=19% Similarity=0.311 Sum_probs=129.3
Q ss_pred CCCCcc-c--CHHHHHHHHHHHhc-C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc--ccccccccccccCCCcccc
Q 018543 11 TLDQVI-V--HQDIAQNLKKLVTE-Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 11 ~~~~~~-g--~~~~~~~l~~~l~~-~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 83 (354)
+|++++ | +..+....+.+.+. + ..++++||||+|+|||++++++++++....++ .+++.+..+.
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~--------- 190 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT--------- 190 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH---------
Confidence 788865 3 45566666666654 2 22349999999999999999999987543211 1111111100
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--HHHHHHHHHHhhcc-Cc
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYS-AS 160 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~Ll~~le~~~-~~ 160 (354)
. ++.. .... ....++.+.+ ....+++|||++.+.. ..+..|+.+++... .+
T Consensus 191 -------~----~~~~-~~~~---~~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~ 244 (450)
T PRK00149 191 -------N----DFVN-ALRN---NTMEEFKEKY-----------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG 244 (450)
T ss_pred -------H----HHHH-HHHc---CcHHHHHHHH-----------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC
Confidence 0 0000 0000 0011121111 1347999999998743 45677888775532 33
Q ss_pred eeEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 161 CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 161 ~~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
..+|++++.+. .+.+.++||+ .++.|++|+.+++..+|++.+...++.++++++++|++.+.||+|.+...|.
T Consensus 245 ~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 245 KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 45777777654 3668899998 4799999999999999999999999999999999999999999999888777
Q ss_pred HHHh
Q 018543 234 TCRV 237 (354)
Q Consensus 234 ~~~~ 237 (354)
.+..
T Consensus 325 ~l~~ 328 (450)
T PRK00149 325 RLIA 328 (450)
T ss_pred HHHH
Confidence 6543
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.75 E-value=6.1e-16 Score=147.11 Aligned_cols=197 Identities=17% Similarity=0.283 Sum_probs=130.8
Q ss_pred ccCC-CCCCCccc---CHHHHHHHHHHHhc-CCC-CeEEEeCCCCCcHHHHHHHHHHHhcCC--CCcccccccccccccC
Q 018543 6 KYRP-KTLDQVIV---HQDIAQNLKKLVTE-QDC-PHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDA 77 (354)
Q Consensus 6 kyrP-~~~~~~~g---~~~~~~~l~~~l~~-~~~-~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~ 77 (354)
+..| .+|++++. +..+...+..+++. +.. +.++|||++|+|||+|++++++++... +...+++....+.
T Consensus 280 ~L~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~--- 356 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT--- 356 (617)
T ss_pred CCCCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH---
Confidence 3344 37999873 23344455555543 222 239999999999999999999987431 1111111111100
Q ss_pred CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHh
Q 018543 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTME 155 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le 155 (354)
-++.. .... .....+.+.+ .+..+|+|||++.+. ...+..|+.+++
T Consensus 357 -----------------~el~~---al~~-~~~~~f~~~y-----------~~~DLLlIDDIq~l~gke~tqeeLF~l~N 404 (617)
T PRK14086 357 -----------------NEFIN---SIRD-GKGDSFRRRY-----------REMDILLVDDIQFLEDKESTQEEFFHTFN 404 (617)
T ss_pred -----------------HHHHH---HHHh-ccHHHHHHHh-----------hcCCEEEEehhccccCCHHHHHHHHHHHH
Confidence 00000 0000 0011111111 234899999999884 345778888886
Q ss_pred hccC-ceeEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Q 018543 156 KYSA-SCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR 227 (354)
Q Consensus 156 ~~~~-~~~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ 227 (354)
.... +..+|++++... .+.+.|+||+ .++.+.+|+.+....+|++.+...++.++++++++|+....+|+|.
T Consensus 405 ~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 405 TLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHH
Confidence 6533 456777777653 4778899997 4799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 018543 228 AILSFETCRV 237 (354)
Q Consensus 228 ai~~L~~~~~ 237 (354)
+...|..+..
T Consensus 485 LegaL~rL~a 494 (617)
T PRK14086 485 LEGALIRVTA 494 (617)
T ss_pred HHHHHHHHHH
Confidence 9888876643
No 107
>PRK05629 hypothetical protein; Validated
Probab=99.75 E-value=1.5e-15 Score=137.39 Aligned_cols=212 Identities=14% Similarity=0.083 Sum_probs=169.5
Q ss_pred CCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC---cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH
Q 018543 128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK 204 (354)
Q Consensus 128 ~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~ 204 (354)
.+++++|++++++.......+.++.+++++++.+.+|+++.... ++.+.++..+.++.+.++...++..|+.+.+.+
T Consensus 62 F~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~ 141 (318)
T PRK05629 62 FGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKN 141 (318)
T ss_pred cCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHH
Confidence 46779999999877666667788999999888888888776443 345578888889999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHH
Q 018543 205 EGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-QYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLY 281 (354)
Q Consensus 205 ~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (354)
.|+.+++++++.+++.+++|+..+.+.++.++.+ +..++.++ .+.....+..+|++++++.. ++..++...+.
T Consensus 142 ~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~----g~~~~Al~~l~ 217 (318)
T PRK05629 142 HGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACA----GQVSKAVASTR 217 (318)
T ss_pred cCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHc----CCHHHHHHHHH
Confidence 9999999999999999999999999999988765 34566655 34455677889999999998 67778888888
Q ss_pred HHHHcCCChHHHHHHHHHH---HH--------------------------------HhCCHHHHHHHHHHHHHHhhHhhC
Q 018543 282 ELLLNCVPPVVVLKRLLYE---LL--------------------------------KRLDAEIKHEVCHWAAYYEHKMRR 326 (354)
Q Consensus 282 ~l~~~~~~~~~il~~l~~~---~~--------------------------------~~~~~~~~~~~~~~~~~~~~~l~~ 326 (354)
+++..|.+|..|+..+.++ +. ++++.+...+++..+.+.|..++.
T Consensus 218 ~l~~~g~~pi~il~~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~ 297 (318)
T PRK05629 218 RALQLGVSPVALAAALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKG 297 (318)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 8889999998885544322 11 123344456778888899999997
Q ss_pred CC-ChhHhHHHHHHHHHH
Q 018543 327 GN-KAIFHLEAFVAKFMS 343 (354)
Q Consensus 327 ~~-~~~l~l~~~i~~~~~ 343 (354)
|+ ++.+.||.+|+++-.
T Consensus 298 ~~~d~~~~lE~~i~~~~~ 315 (318)
T PRK05629 298 QGGDPEFAIESAVRRVAE 315 (318)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 54 779999999988753
No 108
>PRK07914 hypothetical protein; Reviewed
Probab=99.75 E-value=1.9e-15 Score=136.85 Aligned_cols=269 Identities=13% Similarity=0.119 Sum_probs=197.6
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHhcCC-CCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHH
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV 113 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~ 113 (354)
|.++|||+.-.-.......+.+.+... +.... +...+...+.. ..+
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~--------------------------n~~~~d~~~~~------~~~- 52 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADV--------------------------PVSRMRAGDVS------TYE- 52 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCC--------------------------ceEEeccccCC------HHH-
Confidence 349999999888777777776654331 21100 01122222211 233
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC---cccHHHhhhc-ceeeecCC
Q 018543 114 IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIRSRC-LNIRINSP 189 (354)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~sR~-~~i~~~~~ 189 (354)
+.+.. +.|+ .+++++|+++++..+..+..+.|..+++.+++.+.+|++++... ++.++++... .++.+.++
T Consensus 53 i~~~~-t~pl----F~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~ 127 (320)
T PRK07914 53 LAELL-SPSL----FAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARI 127 (320)
T ss_pred HHHhc-CCCC----CCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCC
Confidence 33444 3343 57789999999877777777889999999888788888765433 3445677664 58899998
Q ss_pred -CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCCC--CCCCCCHHHHHHHHHHHHH
Q 018543 190 -TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-QYPFKDNQ--AIPAMDWEEFVFEIASDIM 265 (354)
Q Consensus 190 -~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~ 265 (354)
+..++..|+.+.+++.|+.+++++++.+++..++|+..+.+.++.++.+ +..++.++ .++....+..+|++++++.
T Consensus 128 ~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~ 207 (320)
T PRK07914 128 TKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAV 207 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764 44566555 3455566778999999999
Q ss_pred hccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------------------------hCCHHHHHH
Q 018543 266 QEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------------------------------RLDAEIKHE 312 (354)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------------------------------~~~~~~~~~ 312 (354)
. ++..++...+.+++..|++|..|+..+.+++.. +++.+....
T Consensus 208 ~----g~~~~A~~~l~~L~~~ge~p~~il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~ 283 (320)
T PRK07914 208 A----GDVAGAAEALRWAMMRGEPHVVLADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVAT 283 (320)
T ss_pred C----CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 8 677788888888999999998886544333211 344445667
Q ss_pred HHHHHHHHhhHhhCC-CChhHhHHHHHHHHHHHH
Q 018543 313 VCHWAAYYEHKMRRG-NKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 313 ~~~~~~~~~~~l~~~-~~~~l~l~~~i~~~~~~~ 345 (354)
++..+.+.+..++.| .++.+.||.++.+++...
T Consensus 284 ~l~~l~~~D~~lK~~~~~~~~~lE~~i~~~~~~~ 317 (320)
T PRK07914 284 AMRVVAALNADVKGAAADADYALESAVRRVAELV 317 (320)
T ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Confidence 888899999999976 566889999999987644
No 109
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.74 E-value=1.4e-15 Score=142.22 Aligned_cols=208 Identities=15% Similarity=0.221 Sum_probs=129.4
Q ss_pred CCcccCHHHHHHHHHHHh----cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCC--CcccccccccccccCCCccccccc
Q 018543 13 DQVIVHQDIAQNLKKLVT----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGSRNIDLEL 86 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~----~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
+.++|.+...+.|...+. .+..++++++||||+|||++++.+++.+.... ...+++++.... .+. . -+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~--~~~-~---~~ 103 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR--TRY-A---IF 103 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC--CHH-H---HH
Confidence 567888877776666653 34555699999999999999999998774332 222333322111 000 0 00
Q ss_pred cccccCceeee-CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----HHHHHHHHHHHhhccC-c
Q 018543 87 TTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLRRTMEKYSA-S 160 (354)
Q Consensus 87 ~~~~~~~~i~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----~~~~~~Ll~~le~~~~-~ 160 (354)
..+. ..+.- .....+. ...+++..+..... ..+.+.||+|||+|.+. .+....|++.++..+. +
T Consensus 104 ~~i~--~~l~~~~~~~~~~----~~~~~~~~~~~~l~----~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~ 173 (394)
T PRK00411 104 SEIA--RQLFGHPPPSSGL----SFDELFDKIAEYLD----ERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGAR 173 (394)
T ss_pred HHHH--HHhcCCCCCCCCC----CHHHHHHHHHHHHH----hcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCe
Confidence 0000 00000 0000111 12222222221110 12345799999999885 3345556666555433 5
Q ss_pred eeEEEEecCCC---cccHHHhhhc--ceeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---CCCHHHHHH
Q 018543 161 CRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS---NRSLRRAIL 230 (354)
Q Consensus 161 ~~~Il~~~~~~---~l~~~l~sR~--~~i~~~~~~~~~~~~~L~~~~~~~--~~~i~~~~l~~i~~~s---~gd~R~ai~ 230 (354)
..+|+++|+.+ .+.+.++||+ ..+.|+|++.+++..+++.++... ...+++++++.+++.+ .||+|.|++
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ 253 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAID 253 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHH
Confidence 67888988764 4667788887 479999999999999999988643 2357899999998877 899999999
Q ss_pred HHHHHH
Q 018543 231 SFETCR 236 (354)
Q Consensus 231 ~L~~~~ 236 (354)
+|..++
T Consensus 254 ll~~a~ 259 (394)
T PRK00411 254 LLRRAG 259 (394)
T ss_pred HHHHHH
Confidence 998654
No 110
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.73 E-value=8.8e-17 Score=150.43 Aligned_cols=192 Identities=19% Similarity=0.300 Sum_probs=127.3
Q ss_pred CCCCcc-cC--HHHHHHHHHHHhc-CC-CCeEEEeCCCCCcHHHHHHHHHHHhcCCC--CcccccccccccccCCCcccc
Q 018543 11 TLDQVI-VH--QDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 11 ~~~~~~-g~--~~~~~~l~~~l~~-~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+|++++ |. ..+...++.+.+. +. ..+++||||+|+|||++++++++++.... ...+++.+..+.
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~--------- 178 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT--------- 178 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH---------
Confidence 688854 53 3345555655553 22 23489999999999999999999875432 111111111110
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--HHHHHHHHHHhhc-cCc
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKY-SAS 160 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~Ll~~le~~-~~~ 160 (354)
. .+.. ..... ...++.+.+ .+..+++|||++.+.. ..+..|+.+++.. ..+
T Consensus 179 -------~----~~~~-~~~~~---~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~ 232 (405)
T TIGR00362 179 -------N----DFVN-ALRNN---KMEEFKEKY-----------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENG 232 (405)
T ss_pred -------H----HHHH-HHHcC---CHHHHHHHH-----------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC
Confidence 0 0000 00000 011121111 1237999999998753 4567788887553 334
Q ss_pred eeEEEEecCCC----cccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 161 CRLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 161 ~~~Il~~~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
..+|++++.+. .+.+.++||+. .+.|++|+.+++..+|+..+...++.++++++++|++...||+|.+...|.
T Consensus 233 ~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 233 KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 56777777543 46678999984 699999999999999999999999999999999999999999999777776
Q ss_pred HHHh
Q 018543 234 TCRV 237 (354)
Q Consensus 234 ~~~~ 237 (354)
.+..
T Consensus 313 ~l~~ 316 (405)
T TIGR00362 313 RLLA 316 (405)
T ss_pred HHHH
Confidence 5543
No 111
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-16 Score=149.28 Aligned_cols=191 Identities=20% Similarity=0.271 Sum_probs=131.6
Q ss_pred CCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543 8 RPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (354)
Q Consensus 8 rP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 74 (354)
...+|+|+-|+++++..++..+.. | ..|. +|||||||||||++|+++|++..++ .+.+.
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n---Flsvk----- 500 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN---FLSVK----- 500 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC---eeecc-----
Confidence 346899999999999999987752 3 3333 9999999999999999999975211 11111
Q ss_pred ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH---------
Q 018543 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------- 145 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--------- 145 (354)
.++.+ +.+-+.....++++++...+..| .|+|+||+|.+..+
T Consensus 501 ----------------gpEL~----sk~vGeSEr~ir~iF~kAR~~aP---------~IiFfDEiDsi~~~R~g~~~~v~ 551 (693)
T KOG0730|consen 501 ----------------GPELF----SKYVGESERAIREVFRKARQVAP---------CIIFFDEIDALAGSRGGSSSGVT 551 (693)
T ss_pred ----------------CHHHH----HHhcCchHHHHHHHHHHHhhcCC---------eEEehhhHHhHhhccCCCccchH
Confidence 11110 01111122357788777655443 79999999988432
Q ss_pred --HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 018543 146 --AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRL 217 (354)
Q Consensus 146 --~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~-~l~~i 217 (354)
..+.|+.-|+-. .+++.+|..||.++.|.+++.+ |+ ..|++++|+.+...++|+..+++ .+++++ .++.|
T Consensus 552 ~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~L 629 (693)
T KOG0730|consen 552 DRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEEL 629 (693)
T ss_pred HHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHH
Confidence 344556655332 3567788889999999999999 76 47999999999999999988764 445555 68888
Q ss_pred HHHcCC-CHHHHHHHHHHHHh
Q 018543 218 AEKSNR-SLRRAILSFETCRV 237 (354)
Q Consensus 218 ~~~s~g-d~R~ai~~L~~~~~ 237 (354)
++.+.| +-+...++.+.++.
T Consensus 630 a~~T~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 630 AQATEGYSGAEIVAVCQEAAL 650 (693)
T ss_pred HHHhccCChHHHHHHHHHHHH
Confidence 887665 34444555555443
No 112
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.72 E-value=1.4e-14 Score=131.56 Aligned_cols=275 Identities=16% Similarity=0.209 Sum_probs=191.2
Q ss_pred HHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 23 ~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
..+...+++|.+++ ++|||..-.-....+..+.+.+..++... .+..++
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~------------------------------~~~~~~ 53 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELK------------------------------TLYFDE 53 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhh------------------------------hhchhh
Confidence 35667778887766 99999998888888887776543222100 000000
Q ss_pred CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCc---ccHHHh
Q 018543 102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK---VTEAIR 178 (354)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~---l~~~l~ 178 (354)
....+++..+... |+ .+++++|++.++..+.....+.|..+++.+++.+.+|++.....+ +...+.
T Consensus 54 ------~~~~~i~~~~~t~-pl----F~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~ 122 (328)
T PRK08487 54 ------YDFEQAKDFLSQS-SL----FGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQ 122 (328)
T ss_pred ------ccHHHHHHHHhcc-cc----cCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhc
Confidence 1245566554443 33 467799999988777666678899999988766666654443332 222333
Q ss_pred hh--cceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--CCCCCCHH
Q 018543 179 SR--CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--AIPAMDWE 254 (354)
Q Consensus 179 sR--~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~--~~~~~~~~ 254 (354)
.. ...+.|.+++..++..|+...+.+.|+.+++++++.++..+++|+..+.+.|+.++.....++.++ .++....+
T Consensus 123 ~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e 202 (328)
T PRK08487 123 KKDEAVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGS 202 (328)
T ss_pred cCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhccccc
Confidence 22 457999999999999999999999999999999999999999999999999999988876777666 44555567
Q ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------------------------
Q 018543 255 EFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------------------------- 303 (354)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~------------------------------- 303 (354)
..+|+++++++..+ .+...+.+++..+.+|..|+..+.+++..
T Consensus 203 ~~vF~l~dai~~g~------~a~~~l~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~ 276 (328)
T PRK08487 203 VSFEDFFEKLLNKK------DIKDDLEKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAEN 276 (328)
T ss_pred ccHHHHHHHHHCCC------cHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHH
Confidence 88999999998743 24456667777888888776544433211
Q ss_pred ------hCCHHHHHHHHHHHHHHhhHhhCCCCh--hHhHHHHHHHHHHH
Q 018543 304 ------RLDAEIKHEVCHWAAYYEHKMRRGNKA--IFHLEAFVAKFMSI 344 (354)
Q Consensus 304 ------~~~~~~~~~~~~~~~~~~~~l~~~~~~--~l~l~~~i~~~~~~ 344 (354)
+++.+....++..+.++|..++.|..+ .+-+|.++..+..+
T Consensus 277 ~~~q~~~~s~~~L~~~l~~L~e~D~~lK~g~~~~~~~~~~~~~~~~~~~ 325 (328)
T PRK08487 277 LAKQAIKIKEAQYKEIFELLLEWELELKTGQKIDKNLFLLSTLIKIQKI 325 (328)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 233334456777777888888877444 66666666665544
No 113
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.72 E-value=1.8e-16 Score=140.00 Aligned_cols=105 Identities=29% Similarity=0.314 Sum_probs=80.9
Q ss_pred ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC------------CCcccHHHhhhcceeeecCCCHHHHHHHH
Q 018543 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS------------SSKVTEAIRSRCLNIRINSPTEEQIVKVL 198 (354)
Q Consensus 131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~L 198 (354)
+.|+||||+|.|+.++...|-+.||..- ...+|++||. ++.++..+.+||.+|.-.|++.+++.++|
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 5699999999999999999999998743 3567778873 34688899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 018543 199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCR 236 (354)
Q Consensus 199 ~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~ 236 (354)
.-+++.|++.+++++++.+.... ..++|-|+++|..+.
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 99999999999999999998854 568999999987654
No 114
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.71 E-value=4.3e-16 Score=149.17 Aligned_cols=189 Identities=20% Similarity=0.316 Sum_probs=123.1
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHh-----------cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
.+...+.+|+|++|+++++..+..++. ....|. +||+||||||||++++++|++...+ .+.+++.
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~---~~~i~~~ 122 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP---FFSISGS 122 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC---eeeccHH
Confidence 344455699999999999887776664 123333 9999999999999999999875221 1111111
Q ss_pred cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------
Q 018543 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------- 144 (354)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------- 144 (354)
.+. ... .+. ....++++++..... .+.||+|||+|.+..
T Consensus 123 ~~~---------------------~~~---~g~-~~~~l~~~f~~a~~~---------~p~Il~iDEid~l~~~r~~~~~ 168 (495)
T TIGR01241 123 DFV---------------------EMF---VGV-GASRVRDLFEQAKKN---------APCIIFIDEIDAVGRQRGAGLG 168 (495)
T ss_pred HHH---------------------HHH---hcc-cHHHHHHHHHHHHhc---------CCCEEEEechhhhhhccccCcC
Confidence 110 000 010 112355565554332 347999999988742
Q ss_pred -------HHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543 145 -------EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (354)
Q Consensus 145 -------~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~ 212 (354)
...+.|+..|+... .++.+|.+||.++.+.+++++ |+ ..+.++.|+.++...+++..+...+.. ++.
T Consensus 169 ~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~ 247 (495)
T TIGR01241 169 GGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDV 247 (495)
T ss_pred CccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cch
Confidence 13345666665432 346788888999999999997 55 369999999999999999887654443 344
Q ss_pred HHHHHHHHcCC----CHHHHHH
Q 018543 213 FATRLAEKSNR----SLRRAIL 230 (354)
Q Consensus 213 ~l~~i~~~s~g----d~R~ai~ 230 (354)
.+..+++.+.| |++.+++
T Consensus 248 ~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 248 DLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred hHHHHHHhCCCCCHHHHHHHHH
Confidence 57788887665 4444444
No 115
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.71 E-value=1.7e-16 Score=147.17 Aligned_cols=185 Identities=18% Similarity=0.268 Sum_probs=121.2
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK 67 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 67 (354)
+++++++.+.+|+|+.|.+..++.++.++.. | ..| +++|+||||||||++|+++|+++..+ .+.
T Consensus 171 ~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~---fi~ 247 (438)
T PTZ00361 171 VMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT---FLR 247 (438)
T ss_pred hcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC---EEE
Confidence 4688999999999999999999888887741 1 222 39999999999999999999976221 111
Q ss_pred cccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----
Q 018543 68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---- 143 (354)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---- 143 (354)
+.+..+ . +.+.......+++++..... ..+.||+|||+|.+.
T Consensus 248 V~~seL------------------------~-~k~~Ge~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~kR~ 293 (438)
T PTZ00361 248 VVGSEL------------------------I-QKYLGDGPKLVRELFRVAEE---------NAPSIVFIDEIDAIGTKRY 293 (438)
T ss_pred Eecchh------------------------h-hhhcchHHHHHHHHHHHHHh---------CCCcEEeHHHHHHHhccCC
Confidence 111000 0 00001111235555544332 234799999998762
Q ss_pred -------HHHHHHHHHHHhh-----ccCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCC
Q 018543 144 -------REAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQ 208 (354)
Q Consensus 144 -------~~~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~ 208 (354)
.+.+..++.++.+ ...++.+|++||+++.+.+++.+ |+. .|.|++|+.++...+++.+..+..+.
T Consensus 294 ~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~ 373 (438)
T PTZ00361 294 DATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA 373 (438)
T ss_pred CCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC
Confidence 2334455555532 23467899999999999999875 653 69999999999999999877655442
Q ss_pred CCHHHHHHHHHHcCC
Q 018543 209 LPSGFATRLAEKSNR 223 (354)
Q Consensus 209 i~~~~l~~i~~~s~g 223 (354)
- +-.++.++..+.|
T Consensus 374 ~-dvdl~~la~~t~g 387 (438)
T PTZ00361 374 E-DVDLEEFIMAKDE 387 (438)
T ss_pred c-CcCHHHHHHhcCC
Confidence 1 1235556655443
No 116
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.71 E-value=2.9e-14 Score=130.69 Aligned_cols=271 Identities=12% Similarity=0.091 Sum_probs=190.5
Q ss_pred CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHH
Q 018543 32 QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ 111 (354)
Q Consensus 32 ~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 111 (354)
+..|.++|||+........++.+.+.+..+.... |. ...+...+.. ....
T Consensus 18 ~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~-------fn-------------------~~~~~~~e~~----~~~~ 67 (343)
T PRK06585 18 PKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDP-------FA-------------------VVRLDGDDLD----ADPA 67 (343)
T ss_pred CCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCC-------cc-------------------eeeccHHHhh----cCHH
Confidence 3555699999999998888888887653322110 00 1111111111 0144
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC---cccHHHh--hhcceeee
Q 018543 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIR--SRCLNIRI 186 (354)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~--sR~~~i~~ 186 (354)
+++..+.+ .|+ .+++++|++.+++ ....+.|..+++.+++.+.+|+.+...+ ++...+. .....+.|
T Consensus 68 ~~~~~~~t-~sl----F~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~ 139 (343)
T PRK06585 68 RLEDEANA-ISL----FGGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPC 139 (343)
T ss_pred HHHHHHhC-CCC----CCCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEec
Confidence 55544443 333 4677999999654 3455678888888887787877665433 2333332 23457889
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---CCCCCCC--CCCCCCHHHHHHHHH
Q 018543 187 NSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ---YPFKDNQ--AIPAMDWEEFVFEIA 261 (354)
Q Consensus 187 ~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~---~~~~~~~--~~~~~~~~~~~~~l~ 261 (354)
.+++..++..|+.+++++.|+.+++++++.+++.++||++.+.+.|+.++... ..++.++ .+.....+..+++++
T Consensus 140 ~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~ 219 (343)
T PRK06585 140 YADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAA 219 (343)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHH
Confidence 99999999999999999999999999999999999999999999999988763 3566655 455566778899999
Q ss_pred HHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------------------------------
Q 018543 262 SDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------------------------------- 303 (354)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------------------------------- 303 (354)
+++.. ++..++...+..++..|++|..|+..+.+++..
T Consensus 220 dai~~----~~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~ 295 (343)
T PRK06585 220 DAALA----GDLAAFERALDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALR 295 (343)
T ss_pred HHHHC----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHH
Confidence 99998 666677777888888899988877644443221
Q ss_pred hCCHHHHHHHHHHHHHHhhHhhCCCCh-hHhHHHHHHHHHHH
Q 018543 304 RLDAEIKHEVCHWAAYYEHKMRRGNKA-IFHLEAFVAKFMSI 344 (354)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~l~~~i~~~~~~ 344 (354)
+++.+...+++..+.+.+..++.|..+ .+-+|.++.+++..
T Consensus 296 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~~le~~i~~~~~~ 337 (343)
T PRK06585 296 RWSLERLLRALERLQAAELDCRRNPALADAIARRVLLSIAVR 337 (343)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 233334556777888899999976654 77789999887653
No 117
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=1.1e-16 Score=160.46 Aligned_cols=193 Identities=15% Similarity=0.200 Sum_probs=122.7
Q ss_pred CcccCHHHHHHHHHHHhc------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543 14 QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~~------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
+++|++++++.+..++.. .+.++++|+||||||||++|+++|+.+..+ ...+...+. . +..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~-~~~i~~~~~--~----------~~~ 387 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK-FVRFSLGGV--R----------DEA 387 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-eEEEeCCCc--c----------cHH
Confidence 478999999988876642 234569999999999999999999977322 111111000 0 000
Q ss_pred ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH----HHHHHHHHhhc------
Q 018543 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKY------ 157 (354)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~----~~~Ll~~le~~------ 157 (354)
..... .-.+. +... ..+.+.+... . ....||+|||+|.+.+.. .++|+.+|+..
T Consensus 388 ~i~g~-~~~~~----g~~~-g~i~~~l~~~---~-------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~ 451 (775)
T TIGR00763 388 EIRGH-RRTYV----GAMP-GRIIQGLKKA---K-------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFS 451 (775)
T ss_pred HHcCC-CCcee----CCCC-chHHHHHHHh---C-------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccc
Confidence 00000 00011 1111 1122222221 1 122599999999997543 47888888631
Q ss_pred ---------cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHH
Q 018543 158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA-----KKE-----GLQLPSGFATRLA 218 (354)
Q Consensus 158 ---------~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~-----~~~-----~~~i~~~~l~~i~ 218 (354)
.+++.||++||..+.+++++++||.+|.|++|+.++...++++.+ .+. ++.++++++..|+
T Consensus 452 d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~ 531 (775)
T TIGR00763 452 DHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLI 531 (775)
T ss_pred cccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHH
Confidence 135778899999999999999999999999999999999887754 222 4578999999999
Q ss_pred HHcC--CCHHHHHHHHHHH
Q 018543 219 EKSN--RSLRRAILSFETC 235 (354)
Q Consensus 219 ~~s~--gd~R~ai~~L~~~ 235 (354)
+... ..+|..-..++..
T Consensus 532 ~~~~~e~g~R~l~r~i~~~ 550 (775)
T TIGR00763 532 KYYTREAGVRNLERQIEKI 550 (775)
T ss_pred HhcChhcCChHHHHHHHHH
Confidence 8543 2455544444433
No 118
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.1e-15 Score=136.24 Aligned_cols=215 Identities=15% Similarity=0.223 Sum_probs=135.5
Q ss_pred cccCCCCCCCcccCHHHHHHHH----HHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc--ccccccccccccCC
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLK----KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAG 78 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~----~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~--~~~~~~~~~~~~~~ 78 (354)
+-|-|. ++.+.+.....+. .++..+.+.++++|||||||||++++.+++++...... .++++|.... ++
T Consensus 12 ~~~iP~---~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~--t~ 86 (366)
T COG1474 12 EDYIPE---ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR--TP 86 (366)
T ss_pred CCCCcc---cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCC--CH
Confidence 345553 3666666555554 44455565569999999999999999999998765433 2455554332 11
Q ss_pred CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh--
Q 018543 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK-- 156 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~-- 156 (354)
. .+-.. -...+. .....|.......+.+.+.+.. ....-||++||+|.|....++.|..++.-
T Consensus 87 ~-----~i~~~-i~~~~~-~~p~~g~~~~~~~~~l~~~~~~--------~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~ 151 (366)
T COG1474 87 Y-----QVLSK-ILNKLG-KVPLTGDSSLEILKRLYDNLSK--------KGKTVIVILDEVDALVDKDGEVLYSLLRAPG 151 (366)
T ss_pred H-----HHHHH-HHHHcC-CCCCCCCchHHHHHHHHHHHHh--------cCCeEEEEEcchhhhccccchHHHHHHhhcc
Confidence 0 00000 000000 1111122221223333333222 24567999999999976655666666643
Q ss_pred -ccCceeEEEEecCCC---cccHHHhhhcc--eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCH
Q 018543 157 -YSASCRLILCCNSSS---KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAE---KSNRSL 225 (354)
Q Consensus 157 -~~~~~~~Il~~~~~~---~l~~~l~sR~~--~i~~~~~~~~~~~~~L~~~~~~~--~~~i~~~~l~~i~~---~s~gd~ 225 (354)
...++.+|+++|+.. .+.+.++|+.. .|.|+|++.+|+..+|..+++.. .-.+++++++.++. ..+||+
T Consensus 152 ~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDA 231 (366)
T COG1474 152 ENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDA 231 (366)
T ss_pred ccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccH
Confidence 333456777777764 67888888864 58899999999999999988642 33577888877764 567899
Q ss_pred HHHHHHHHHHHhcC
Q 018543 226 RRAILSFETCRVQQ 239 (354)
Q Consensus 226 R~ai~~L~~~~~~~ 239 (354)
|.|+.+|..++..+
T Consensus 232 R~aidilr~A~eiA 245 (366)
T COG1474 232 RKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876543
No 119
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=5.5e-16 Score=155.69 Aligned_cols=199 Identities=16% Similarity=0.307 Sum_probs=138.2
Q ss_pred CCcccCHHHHHHHHHHHhc---C----CCC--eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 13 DQVIVHQDIAQNLKKLVTE---Q----DCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~---~----~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
..++||+++++.+...+.. | ..| .++|+||+|+|||.+|+++|+.+++.....+.++...|. .+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~--~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ--EA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh--hh-----
Confidence 4678999999888887742 1 122 389999999999999999999987655444555554443 00
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~----- 158 (354)
... ...+.-.+...|......+.+ .+.. .++.||+|||++.++++.++.|++++++..
T Consensus 639 ---~~~--~~l~g~~~gyvg~~~~g~L~~---~v~~---------~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~ 701 (852)
T TIGR03345 639 ---HTV--SRLKGSPPGYVGYGEGGVLTE---AVRR---------KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGE 701 (852)
T ss_pred ---hhh--ccccCCCCCcccccccchHHH---HHHh---------CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCC
Confidence 000 000111111112111112222 2222 234899999999999999999999998753
Q ss_pred ------CceeEEEEecCCC-----------------------------cccHHHhhhcceeeecCCCHHHHHHHHHHHHH
Q 018543 159 ------ASCRLILCCNSSS-----------------------------KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK 203 (354)
Q Consensus 159 ------~~~~~Il~~~~~~-----------------------------~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~ 203 (354)
.++.+|++||-.. .+.|++.+||.+|.|.|++.+++.+++...+.
T Consensus 702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHH
Confidence 5788898887311 25678899999999999999999999977554
Q ss_pred H-------c-C--CCCCHHHHHHHHHHcCC---CHHHHHHHHHHH
Q 018543 204 K-------E-G--LQLPSGFATRLAEKSNR---SLRRAILSFETC 235 (354)
Q Consensus 204 ~-------~-~--~~i~~~~l~~i~~~s~g---d~R~ai~~L~~~ 235 (354)
. . | +.+++++++.|++.+.+ ++|.+.+.++..
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 2 1 4 46789999999999877 799888888754
No 120
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.5e-15 Score=137.91 Aligned_cols=186 Identities=20% Similarity=0.361 Sum_probs=131.9
Q ss_pred CCCCccc---CHHHHHHHHHHHhc-C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccc
Q 018543 11 TLDQVIV---HQDIAQNLKKLVTE-Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (354)
Q Consensus 11 ~~~~~~g---~~~~~~~l~~~l~~-~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (354)
+|++++. +.-+......+.+. | ..++++||||.|+|||+|+++++++.....+...
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~------------------- 145 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNAR------------------- 145 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCce-------------------
Confidence 6777763 44455555555554 2 2344999999999999999999998755443210
Q ss_pred ccccccCceeeeCCCCCCCcchhHHHHHHH--------HHHhcCCCCCCCCCCceEEEEeCCCcCCH--HHHHHHHHHHh
Q 018543 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIK--------EMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTME 155 (354)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~Ll~~le 155 (354)
++.+..++ ...+++. .+.... ...+++||+++.+.. ..+..|..++.
T Consensus 146 --------v~y~~se~-------f~~~~v~a~~~~~~~~Fk~~y--------~~dlllIDDiq~l~gk~~~qeefFh~FN 202 (408)
T COG0593 146 --------VVYLTSED-------FTNDFVKALRDNEMEKFKEKY--------SLDLLLIDDIQFLAGKERTQEEFFHTFN 202 (408)
T ss_pred --------EEeccHHH-------HHHHHHHHHHhhhHHHHHHhh--------ccCeeeechHhHhcCChhHHHHHHHHHH
Confidence 11111111 0111111 121111 237999999998753 45888888887
Q ss_pred hccCce-eEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Q 018543 156 KYSASC-RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR 227 (354)
Q Consensus 156 ~~~~~~-~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ 227 (354)
...... .+|+++..+. .+.+.++||+ .++.+.||+.+....+|...++..++.++++++.+++.....|+|.
T Consensus 203 ~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvRe 282 (408)
T COG0593 203 ALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRE 282 (408)
T ss_pred HHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHH
Confidence 654443 5666666554 3668999996 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 018543 228 AILSFETCRVQ 238 (354)
Q Consensus 228 ai~~L~~~~~~ 238 (354)
+...|+.+...
T Consensus 283 LegaL~~l~~~ 293 (408)
T COG0593 283 LEGALNRLDAF 293 (408)
T ss_pred HHHHHHHHHHH
Confidence 99888766544
No 121
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.70 E-value=1.6e-15 Score=132.03 Aligned_cols=104 Identities=25% Similarity=0.292 Sum_probs=91.8
Q ss_pred ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC------------CCcccHHHhhhcceeeecCCCHHHHHHHH
Q 018543 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS------------SSKVTEAIRSRCLNIRINSPTEEQIVKVL 198 (354)
Q Consensus 131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~L 198 (354)
+.|+||||+|.|+-++...|.+.||..- ...+|++||. |+.++..+.+|..+|.-.|++.++++.++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 5699999999999999999999998743 2456677774 44799999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH
Q 018543 199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETC 235 (354)
Q Consensus 199 ~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~ 235 (354)
+.++..+++.+++++++.++... ..++|-|+++|.-+
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa 408 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPA 408 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHH
Confidence 99999999999999999999975 46899999998843
No 122
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.70 E-value=1.4e-15 Score=140.23 Aligned_cols=192 Identities=19% Similarity=0.268 Sum_probs=122.2
Q ss_pred cCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543 7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (354)
Q Consensus 7 yrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 73 (354)
..+.+|+|+.|.+..++.++..+.. | ..| .+||+||||||||++++++|+++..+ .+.+.+..+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~---fi~i~~s~l 215 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT---FIRVVGSEF 215 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC---EEEEehHHH
Confidence 3445899999999999888887641 2 122 39999999999999999999975221 111111000
Q ss_pred cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----------
Q 018543 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------- 143 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------- 143 (354)
. ..+-......+++++..... ..+.||+|||+|.+.
T Consensus 216 ~-------------------------~k~~ge~~~~lr~lf~~A~~---------~~P~ILfIDEID~i~~~r~~~~~~~ 261 (398)
T PTZ00454 216 V-------------------------QKYLGEGPRMVRDVFRLARE---------NAPSIIFIDEVDSIATKRFDAQTGA 261 (398)
T ss_pred H-------------------------HHhcchhHHHHHHHHHHHHh---------cCCeEEEEECHhhhccccccccCCc
Confidence 0 00000111235555544332 234799999998762
Q ss_pred -HHHHHHHHHHH---hhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 018543 144 -REAQHSLRRTM---EKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (354)
Q Consensus 144 -~~~~~~Ll~~l---e~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l 214 (354)
...+..+..++ +.. ..++.+|++||+++.+.+++.+ |+. .|+|++|+.++...+++.+..+.++.- +-.+
T Consensus 262 d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~ 340 (398)
T PTZ00454 262 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDL 340 (398)
T ss_pred cHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCH
Confidence 23344444444 322 3467899999999999999886 653 599999999999999998887665542 2346
Q ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Q 018543 215 TRLAEKSNR-SLRRAILSFETCR 236 (354)
Q Consensus 215 ~~i~~~s~g-d~R~ai~~L~~~~ 236 (354)
..++..+.| +.+...++++.++
T Consensus 341 ~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 341 EDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH
Confidence 677776655 3444444444443
No 123
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.69 E-value=4.6e-16 Score=134.44 Aligned_cols=156 Identities=14% Similarity=0.170 Sum_probs=114.9
Q ss_pred ceeEEEEecC-CC-cccHHHhhhcceeeecCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHH
Q 018543 160 SCRLILCCNS-SS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE------GLQLPSGFATRLAEKSNRSLRRAILS 231 (354)
Q Consensus 160 ~~~~Il~~~~-~~-~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~------~~~i~~~~l~~i~~~s~gd~R~ai~~ 231 (354)
...+|.+|+. |. .+.++|+|||+++.|.+++.+++..+|++.+..+ .+.+++++++.|++.++||.|.|+|.
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~ 87 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL 87 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence 3455554443 33 7999999999999999999999999999988742 36799999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHH
Q 018543 232 FETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKH 311 (354)
Q Consensus 232 L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~~~~ 311 (354)
||.++.... .+... .. . .+.++.++.. ....+++..+.+|++++ +|+|+ .|+
T Consensus 88 LE~a~~~~~---~~~~~-~i-t----~~~~~~~~~~-~~~~yDk~gd~HYd~iS--------------Af~KS----iRG 139 (300)
T PRK14700 88 LERMFLIST---RGDEI-YL-N----KELFDQAVGE-TSRDFHREGKEFYEQLS--------------AFHKS----VRG 139 (300)
T ss_pred HHHHHhhcc---ccCCC-cc-C----HHHHHHHHhH-HHhcccCCcchhHHHHH--------------HHHHH----hhc
Confidence 998663211 01110 01 1 1222332221 11233444456776554 68887 889
Q ss_pred HHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543 312 EVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG 347 (354)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~ 347 (354)
+..+++.+|..||..|++|+. ||+|+|.++|+
T Consensus 140 SDpDAAlYyLArml~~GEDp~----~IaRRLii~As 171 (300)
T PRK14700 140 TDPDAAIFWLSVMLDNGVDPL----VIARRMLCIAS 171 (300)
T ss_pred CCccHHHHHHHHHHHcCCCHH----HHHHHHHHHHH
Confidence 999999999999999999985 99999999986
No 124
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.5e-15 Score=140.37 Aligned_cols=184 Identities=19% Similarity=0.283 Sum_probs=128.6
Q ss_pred CCCCcccCHHHHHHHHHHHhc----------CCCCe--EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543 11 TLDQVIVHQDIAQNLKKLVTE----------QDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~----------~~~~~--~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 78 (354)
+|.++-|.+.....|..++-. |-.|. +||+||||||||.+|+++|+++--+- +.+.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf---~~is--------- 255 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF---LSIS--------- 255 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce---Eeec---------
Confidence 599999999888877776632 43333 99999999999999999999872211 1110
Q ss_pred CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-----------HH
Q 018543 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------AQ 147 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----------~~ 147 (354)
.+ ++. +...+.....+|++++......| .|+||||+|.+.+. ..
T Consensus 256 ------------Ap---eiv-SGvSGESEkkiRelF~~A~~~aP---------civFiDeIDAI~pkRe~aqreMErRiV 310 (802)
T KOG0733|consen 256 ------------AP---EIV-SGVSGESEKKIRELFDQAKSNAP---------CIVFIDEIDAITPKREEAQREMERRIV 310 (802)
T ss_pred ------------ch---hhh-cccCcccHHHHHHHHHHHhccCC---------eEEEeecccccccchhhHHHHHHHHHH
Confidence 01 111 11222333568888887666544 79999999999743 23
Q ss_pred HHHHHHHhhcc------CceeEEEEecCCCcccHHHhhh--cc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543 148 HSLRRTMEKYS------ASCRLILCCNSSSKVTEAIRSR--CL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (354)
Q Consensus 148 ~~Ll~~le~~~------~~~~~Il~~~~~~~l~~~l~sR--~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~ 218 (354)
..|+..|.+.. ..+.+|.+||.|+.+.++||+- +. .|.+.-|+..+..++|+.+|+...+.- +-....||
T Consensus 311 aQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA 389 (802)
T KOG0733|consen 311 AQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLA 389 (802)
T ss_pred HHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHH
Confidence 45777776543 3467888999999999999984 43 599999999999999999997544432 23477888
Q ss_pred HHcCCCHHHHHHHH
Q 018543 219 EKSNRSLRRAILSF 232 (354)
Q Consensus 219 ~~s~gd~R~ai~~L 232 (354)
..+.|-+..-+..|
T Consensus 390 ~lTPGfVGADL~AL 403 (802)
T KOG0733|consen 390 KLTPGFVGADLMAL 403 (802)
T ss_pred hcCCCccchhHHHH
Confidence 88888666544443
No 125
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.68 E-value=1.1e-15 Score=154.68 Aligned_cols=204 Identities=17% Similarity=0.281 Sum_probs=144.0
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++.||..++.++|+++.++.+...+..+..++.+|+||||+|||++++.++..+...... ....+
T Consensus 163 l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p-~~l~~------------ 229 (852)
T TIGR03346 163 LTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVP-ESLKN------------ 229 (852)
T ss_pred HHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCc-hhhcC------------
Confidence 56789999999999999998888888877777779999999999999999999976332110 00000
Q ss_pred cccccccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHH
Q 018543 83 DLELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQH 148 (354)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~ 148 (354)
...+.+... .+.......++.+++.+... .++.|+||||+|.+.. ++.+
T Consensus 230 ---------~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~--------~~~~ILfIDEih~l~~~g~~~~~~d~~~ 292 (852)
T TIGR03346 230 ---------KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS--------EGQIILFIDELHTLVGAGKAEGAMDAGN 292 (852)
T ss_pred ---------CeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc--------CCCeEEEeccHHHhhcCCCCcchhHHHH
Confidence 111111111 11111112355555554332 2347999999998852 3456
Q ss_pred HHHHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 018543 149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE 219 (354)
Q Consensus 149 ~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~ 219 (354)
.|...++. ....+|.+|+..+ ...+++.+||+.|.++.|+.++...+|.....+ .++.++++++..++.
T Consensus 293 ~Lk~~l~~--g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ 370 (852)
T TIGR03346 293 MLKPALAR--GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAAT 370 (852)
T ss_pred Hhchhhhc--CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHH
Confidence 66655543 4567777777653 478999999999999999999999999876554 367789999999998
Q ss_pred HcCC---C---HHHHHHHHHHHHhc
Q 018543 220 KSNR---S---LRRAILSFETCRVQ 238 (354)
Q Consensus 220 ~s~g---d---~R~ai~~L~~~~~~ 238 (354)
.+.+ | +.+|+.+|+.+|+.
T Consensus 371 ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 371 LSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred hccccccccCCchHHHHHHHHHHHH
Confidence 8764 3 77899999988754
No 126
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.68 E-value=1.4e-14 Score=130.71 Aligned_cols=211 Identities=15% Similarity=0.163 Sum_probs=159.8
Q ss_pred CCCceEEEEeCCCcCC-HHHHHHHHHHHhhccCceeEEEEecCCCc---ccHHHh--hhcceeeecCCCHHHHHHHHHHH
Q 018543 128 KRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSK---VTEAIR--SRCLNIRINSPTEEQIVKVLEFI 201 (354)
Q Consensus 128 ~~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~~---l~~~l~--sR~~~i~~~~~~~~~~~~~L~~~ 201 (354)
.++.++++|++++.+. ....+.|.+.++++++++.+|++++..+. +...+. ++|.++.|.+++..++..++...
T Consensus 44 f~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 123 (302)
T TIGR01128 44 FSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQAR 123 (302)
T ss_pred ccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHH
Confidence 3567999999999876 46678999999999888888888876542 222333 49999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHH
Q 018543 202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ--QYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVR 277 (354)
Q Consensus 202 ~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~--~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 277 (354)
+.+.|+.+++++++.+++.++||++.+.+.++.++.. +..++.++ .+.....+..+++++++++. ++...+.
T Consensus 124 ~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~----~~~~~a~ 199 (302)
T TIGR01128 124 LKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLE----GKAARAL 199 (302)
T ss_pred HHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHC----CCHHHHH
Confidence 9999999999999999999999999999999988776 23454433 22222344557788888887 5556666
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHH------------------------------------hCCHHHHHHHHHHHHHHh
Q 018543 278 GKLYELLLNCVPPVVVLKRLLYELLK------------------------------------RLDAEIKHEVCHWAAYYE 321 (354)
Q Consensus 278 ~~~~~l~~~~~~~~~il~~l~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~ 321 (354)
..+..++..+.+|..++..+...+.. .++.+....++..+.+.+
T Consensus 200 ~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d 279 (302)
T TIGR01128 200 RILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEAD 279 (302)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 77777778888887776654443322 233344556788888888
Q ss_pred hHhhC--CCChhHhHHHHHHHHH
Q 018543 322 HKMRR--GNKAIFHLEAFVAKFM 342 (354)
Q Consensus 322 ~~l~~--~~~~~l~l~~~i~~~~ 342 (354)
..++. +.++.+.||.++.+++
T Consensus 280 ~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 280 LQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHhCcCCCCHHHHHHHHHHHhC
Confidence 88883 5556888888887763
No 127
>CHL00176 ftsH cell division protein; Validated
Probab=99.68 E-value=4.1e-15 Score=144.36 Aligned_cols=187 Identities=18% Similarity=0.290 Sum_probs=121.7
Q ss_pred CCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 77 (354)
.+|+|+.|.+++++.+...+.. ...| ++||+||||||||++|+++|++...+ .+.+++..+.
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p---~i~is~s~f~--- 253 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP---FFSISGSEFV--- 253 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eeeccHHHHH---
Confidence 5899999999988877776531 1223 49999999999999999999976221 1111111111
Q ss_pred CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-----------HHH
Q 018543 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------REA 146 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~~~ 146 (354)
+. ..+ .....+++++..... ..+.||+|||+|.+. .+.
T Consensus 254 ------------------~~---~~g-~~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~~r~~~~~~~~~e~ 302 (638)
T CHL00176 254 ------------------EM---FVG-VGAARVRDLFKKAKE---------NSPCIVFIDEIDAVGRQRGAGIGGGNDER 302 (638)
T ss_pred ------------------HH---hhh-hhHHHHHHHHHHHhc---------CCCcEEEEecchhhhhcccCCCCCCcHHH
Confidence 00 001 011235555544332 234799999999873 223
Q ss_pred HHH---HHHHHhhc--cCceeEEEEecCCCcccHHHhhh--c-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543 147 QHS---LRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (354)
Q Consensus 147 ~~~---Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~ 218 (354)
+.. |+..|+.. ..++.+|.+||+++.+.+++.++ + ..+.|++|+.++...+|+.++....+ .++..+..++
T Consensus 303 ~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA 381 (638)
T CHL00176 303 EQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIA 381 (638)
T ss_pred HHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHH
Confidence 333 44444432 24567888889989999999874 4 47999999999999999998876433 3456788899
Q ss_pred HHcCC-CHHHHHHHHHH
Q 018543 219 EKSNR-SLRRAILSFET 234 (354)
Q Consensus 219 ~~s~g-d~R~ai~~L~~ 234 (354)
+.+.| +.+..-+++..
T Consensus 382 ~~t~G~sgaDL~~lvne 398 (638)
T CHL00176 382 RRTPGFSGADLANLLNE 398 (638)
T ss_pred hcCCCCCHHHHHHHHHH
Confidence 98877 44444444443
No 128
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.68 E-value=6e-14 Score=128.68 Aligned_cols=224 Identities=17% Similarity=0.187 Sum_probs=159.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHH----HHHHHHHhhccCc--eeEEEEecCCC---cc---cHHH
Q 018543 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQ----HSLRRTMEKYSAS--CRLILCCNSSS---KV---TEAI 177 (354)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~----~~Ll~~le~~~~~--~~~Il~~~~~~---~l---~~~l 177 (354)
+.+++..+. +.|+ .++.++|+|++++.+..... ..+..++ ++++. ..+++.++..+ ++ .+++
T Consensus 61 ~~~l~~~~~-t~~l----F~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~ 134 (340)
T PRK05574 61 WDDVLEACQ-SLPL----FSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKAL 134 (340)
T ss_pred HHHHHHHhh-ccCc----cccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHH
Confidence 445554433 3333 36779999999998865422 3333444 33433 34444444433 23 6788
Q ss_pred hhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCCC--CCCCCCH
Q 018543 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ--YPFKDNQ--AIPAMDW 253 (354)
Q Consensus 178 ~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~--~~~~~~~--~~~~~~~ 253 (354)
.++|.++.|++++..++..++...+.+.|+.+++++++.+++.++||++.+.+.++.++... ..++.++ .+.....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~ 214 (340)
T PRK05574 135 KKKAVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSA 214 (340)
T ss_pred HhCceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhh
Confidence 88999999999999999999999999999999999999999999999999999999887653 2355444 2333344
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-------------------------------
Q 018543 254 EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL------------------------------- 302 (354)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~------------------------------- 302 (354)
+..++++++.++. ++...+...+..++.++.+|..++..+..++.
T Consensus 215 ~~~~f~l~dai~~----~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~ 290 (340)
T PRK05574 215 RFDVFDLVDAILA----GKIKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKL 290 (340)
T ss_pred cCCHHHHHHHHHC----CCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHH
Confidence 5677888888887 45556667777777778888777664443322
Q ss_pred -----HhCCHHHHHHHHHHHHHHhhHhhCCC--ChhHhHHHHHHHHHH
Q 018543 303 -----KRLDAEIKHEVCHWAAYYEHKMRRGN--KAIFHLEAFVAKFMS 343 (354)
Q Consensus 303 -----~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~l~~~i~~~~~ 343 (354)
+.++.+....++..+.+.+..++.|. ++.+.+|.|+.+++.
T Consensus 291 ~~~~~~~~s~~~L~~~l~~L~~~d~~iK~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 291 ALRALQRLSLKQLKQAIQLLAETDYQIKTGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence 13344455678888889999999885 678889999988764
No 129
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.68 E-value=2.5e-15 Score=139.17 Aligned_cols=177 Identities=21% Similarity=0.301 Sum_probs=116.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 75 (354)
..+++++.|.+..++.+...+.. | ..| ++||+||||||||++|+++|+++..+ .+.+.+..+.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~---~i~v~~~~l~- 202 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT---FIRVVGSELV- 202 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC---EEEeehHHHh-
Confidence 34788999999999888887632 1 223 39999999999999999999976221 1111111000
Q ss_pred cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-----------CH
Q 018543 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----------SR 144 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-----------~~ 144 (354)
. .+.......+++++..... ..+.||+|||+|.+ +.
T Consensus 203 -----------------------~-~~~g~~~~~i~~~f~~a~~---------~~p~IlfiDEiD~l~~~r~~~~~~~~~ 249 (389)
T PRK03992 203 -----------------------Q-KFIGEGARLVRELFELARE---------KAPSIIFIDEIDAIAAKRTDSGTSGDR 249 (389)
T ss_pred -----------------------H-hhccchHHHHHHHHHHHHh---------cCCeEEEEechhhhhcccccCCCCccH
Confidence 0 0000111234555543332 23479999999987 24
Q ss_pred HHHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 018543 145 EAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216 (354)
Q Consensus 145 ~~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~ 216 (354)
+.+..+...+.+. ..++.+|++||.++.+.+++.+ |+. .|+|++|+.++..++++.++....+.- +..+..
T Consensus 250 ~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~ 328 (389)
T PRK03992 250 EVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEE 328 (389)
T ss_pred HHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHH
Confidence 4555666666432 2467899999999999999986 664 699999999999999998776444321 234677
Q ss_pred HHHHcCC
Q 018543 217 LAEKSNR 223 (354)
Q Consensus 217 i~~~s~g 223 (354)
++..+.|
T Consensus 329 la~~t~g 335 (389)
T PRK03992 329 LAELTEG 335 (389)
T ss_pred HHHHcCC
Confidence 7776655
No 130
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.67 E-value=2.6e-15 Score=151.48 Aligned_cols=185 Identities=21% Similarity=0.351 Sum_probs=125.2
Q ss_pred CCcccCHHHHHHHHHHHhc--------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 13 DQVIVHQDIAQNLKKLVTE--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~--------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+.++||+++++.+...+.. +++. .++|+||+|+|||++|+++|+.+++.....+.++...|.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~--------- 579 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYM--------- 579 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcc---------
Confidence 4688999999999888753 1222 389999999999999999999998876555555544433
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc------
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------ 157 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~------ 157 (354)
+..... ..+.-.+...+... ...+...+.. .+++||++||+|.++++.++.|+++|++.
T Consensus 580 -~~~~~~--~l~g~~~gyvg~~~---~~~l~~~~~~---------~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~ 644 (821)
T CHL00095 580 -EKHTVS--KLIGSPPGYVGYNE---GGQLTEAVRK---------KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK 644 (821)
T ss_pred -ccccHH--HhcCCCCcccCcCc---cchHHHHHHh---------CCCeEEEECChhhCCHHHHHHHHHHhccCceecCC
Confidence 000000 00111111111111 1122222222 23489999999999999999999999874
Q ss_pred -----cCceeEEEEecCCCc-------------------------------------ccHHHhhhc-ceeeecCCCHHHH
Q 018543 158 -----SASCRLILCCNSSSK-------------------------------------VTEAIRSRC-LNIRINSPTEEQI 194 (354)
Q Consensus 158 -----~~~~~~Il~~~~~~~-------------------------------------l~~~l~sR~-~~i~~~~~~~~~~ 194 (354)
-.++.||++||-... +.|.+.+|+ .++.|.|++.+++
T Consensus 645 g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l 724 (821)
T CHL00095 645 GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDV 724 (821)
T ss_pred CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHH
Confidence 256888888874211 235678898 7899999999999
Q ss_pred HHHHHHHHHH-------cC--CCCCHHHHHHHHHHc
Q 018543 195 VKVLEFIAKK-------EG--LQLPSGFATRLAEKS 221 (354)
Q Consensus 195 ~~~L~~~~~~-------~~--~~i~~~~l~~i~~~s 221 (354)
.+++...+.+ .| +.+++++.+.|++..
T Consensus 725 ~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 725 WEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 9998776543 23 467899999999963
No 131
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.66 E-value=5.7e-16 Score=153.00 Aligned_cols=202 Identities=20% Similarity=0.349 Sum_probs=147.2
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcC------------C--CCe--EEEeCCCCCcHHHHHHHHHHHhcCCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ------------D--CPH--LLFYGPPGSGKKTLIMALLRQVFGPGAE 64 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~------------~--~~~--~ll~Gp~G~GKTtla~~la~~l~~~~~~ 64 (354)
+.|.++|+|++..++.|+......+..|++.. . ..+ ++++||||+|||+.+++.|.++. .
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g-~--- 383 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELG-F--- 383 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcc-c---
Confidence 47999999999999999988877888887642 1 112 58999999999999999998751 1
Q ss_pred ccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC---------CCCCCCceEEE
Q 018543 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID---------TKGKRGFKVLV 135 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~vii 135 (354)
..++.++++.+... .+.+.+..+.....+. ........||+
T Consensus 384 ----------------------------~v~E~Nas~~RSk~--~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil 433 (871)
T KOG1968|consen 384 ----------------------------KVVEKNASDVRSKK--ELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLIL 433 (871)
T ss_pred ----------------------------ceeecCcccccccc--HHHhhhhccccccchhhhhcccccccccccceeEEE
Confidence 12444444443221 1112121211111110 01123445999
Q ss_pred EeCCCcCCH---HHHHHHHHHHhhccCceeEEEEecCCCc-ccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543 136 LNEVDKLSR---EAQHSLRRTMEKYSASCRLILCCNSSSK-VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (354)
Q Consensus 136 iDE~d~l~~---~~~~~Ll~~le~~~~~~~~Il~~~~~~~-l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~ 211 (354)
+||+|.+.. .....+-.+.++ ...++|++||+... -..++.+-|..++|+.|+.+.+...+..++..+++.+++
T Consensus 434 ~devD~~~~~dRg~v~~l~~l~~k--s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~ 511 (871)
T KOG1968|consen 434 MDEVDGMFGEDRGGVSKLSSLCKK--SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISD 511 (871)
T ss_pred EeccccccchhhhhHHHHHHHHHh--ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCc
Confidence 999999976 344555555563 45789999999874 344677778999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 018543 212 GFATRLAEKSNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 212 ~~l~~i~~~s~gd~R~ai~~L~~~~~~ 238 (354)
+.++.++..++||+|..++.|+.++..
T Consensus 512 ~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 512 DVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred HHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 999999999999999999999988544
No 132
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.66 E-value=1.7e-15 Score=142.41 Aligned_cols=180 Identities=16% Similarity=0.249 Sum_probs=116.4
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
.+++.+.+|+++.|.+..++.++..+.. | ..| .+|||||||||||++++++|+++..+.... ...
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~--~~~ 250 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE--TGD 250 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc--cCC
Confidence 4677888999999999999888887641 2 223 399999999999999999999873321100 000
Q ss_pred ccccccCCCccccccccccccCceeeeCCCC----CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--
Q 018543 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSD----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-- 144 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-- 144 (354)
. ..++.+..++ +.......++.+++....... .+.+.||||||+|.+..
T Consensus 251 ~--------------------~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~-----~g~p~IIfIDEiD~L~~~R 305 (512)
T TIGR03689 251 K--------------------SYFLNIKGPELLNKYVGETERQIRLIFQRAREKAS-----DGRPVIVFFDEMDSIFRTR 305 (512)
T ss_pred c--------------------eeEEeccchhhcccccchHHHHHHHHHHHHHHHhh-----cCCCceEEEehhhhhhccc
Confidence 0 0001111110 001111234555544333221 23568999999998732
Q ss_pred ------H----HHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCC
Q 018543 145 ------E----AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQL 209 (354)
Q Consensus 145 ------~----~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i 209 (354)
+ ..+.|+..|+... .++.+|.+||+++.+.+++.+ |+. .|+|++|+.++...+++.++.. .+.+
T Consensus 306 ~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l 384 (512)
T TIGR03689 306 GSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPL 384 (512)
T ss_pred CCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCc
Confidence 1 2345666665432 467788899999999999998 764 5999999999999999988753 4455
Q ss_pred CH
Q 018543 210 PS 211 (354)
Q Consensus 210 ~~ 211 (354)
++
T Consensus 385 ~~ 386 (512)
T TIGR03689 385 DA 386 (512)
T ss_pred hH
Confidence 33
No 133
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.66 E-value=5.2e-15 Score=139.36 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=119.0
Q ss_pred CCCCCcccCHHHHHHHHHHHh--------cC-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 10 KTLDQVIVHQDIAQNLKKLVT--------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~--------~~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.+|+++.|.+.+++.++.... .| ..|. +||+||||||||++|+++|+++..+ .+.+++..+
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~---~~~l~~~~l------ 295 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP---LLRLDVGKL------ 295 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC---EEEEEhHHh------
Confidence 579999999888877765321 13 2333 9999999999999999999976211 111111000
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH------------HHH
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------EAQ 147 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------------~~~ 147 (354)
.....| .....++++++..... .+.||+|||+|.+.. ...
T Consensus 296 ------------------~~~~vG-ese~~l~~~f~~A~~~---------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl 347 (489)
T CHL00195 296 ------------------FGGIVG-ESESRMRQMIRIAEAL---------SPCILWIDEIDKAFSNSESKGDSGTTNRVL 347 (489)
T ss_pred ------------------cccccC-hHHHHHHHHHHHHHhc---------CCcEEEehhhhhhhccccCCCCchHHHHHH
Confidence 000011 1123466666544332 347999999986632 123
Q ss_pred HHHHHHHhhccCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCC
Q 018543 148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRLAEKSNR 223 (354)
Q Consensus 148 ~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~-i~~~~l~~i~~~s~g 223 (354)
..|+..|.+....+.+|.+||+++.+++++.+ |+. .+.++.|+.++...+++..+.+.+.. .++..++.+++.+.|
T Consensus 348 ~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~G 427 (489)
T CHL00195 348 ATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNK 427 (489)
T ss_pred HHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCC
Confidence 45667776665667788899999999999986 674 69999999999999999988775432 335567888887665
No 134
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=6.5e-16 Score=125.42 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce----
Q 018543 108 YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN---- 183 (354)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~---- 183 (354)
..+|++++.....+. ..+ +||+++|.|+.+++|+|++++|+||.++.||++|+++.++++|++|||+.
T Consensus 40 d~iReii~~~~~~~~-------~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~ 111 (206)
T PRK08485 40 EDAKEVIAEAYIAES-------EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK 111 (206)
T ss_pred HHHHHHHHHHhhCCC-------CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheecccc
Confidence 457887776544321 224 46789999999999999999999999999999999999999999999986
Q ss_pred ---------eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543 184 ---------IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235 (354)
Q Consensus 184 ---------i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~ 235 (354)
+.|++++.+++...|++ ..++++...+++++.|++.+.|.+|.++.+.+..
T Consensus 112 ~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~ 171 (206)
T PRK08485 112 QKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEE 171 (206)
T ss_pred ccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHH
Confidence 77899999999999998 6788888889999999999999999998776644
No 135
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.64 E-value=3.5e-15 Score=150.40 Aligned_cols=203 Identities=15% Similarity=0.240 Sum_probs=142.2
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+++-||.++++++|+++.++.+...+.....++++|+||||||||++++.+|..+...... ....
T Consensus 169 ~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp-~~l~-------------- 233 (857)
T PRK10865 169 TERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP-EGLK-------------- 233 (857)
T ss_pred HHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCc-hhhC--------------
Confidence 5678999999999999988888888877777789999999999999999999976432110 0000
Q ss_pred ccccccccCceeeeCCCC------CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHHH
Q 018543 84 LELTTLSSANHVELSPSD------AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHS 149 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~ 149 (354)
....+.+.... +.......++.+++++... ..+.|+||||+|.+.. ++++.
T Consensus 234 -------~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~--------~~~~ILfIDEih~l~~~~~~~~~~d~~~~ 298 (857)
T PRK10865 234 -------GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGNM 298 (857)
T ss_pred -------CCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc--------CCCeEEEEecHHHhccCCCCccchhHHHH
Confidence 01111211111 1111112455555554432 2347999999998853 35777
Q ss_pred HHHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH
Q 018543 150 LRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEK 220 (354)
Q Consensus 150 Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~ 220 (354)
|...++. +...+|.+|+..+ ...+++.+||+.|.+..|+.++...+|+....+ .++.++++++...+..
T Consensus 299 lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~l 376 (857)
T PRK10865 299 LKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATL 376 (857)
T ss_pred hcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHH
Confidence 7777764 4567777777665 478999999999999999999999999876643 3578889998887776
Q ss_pred cCC------CHHHHHHHHHHHHhc
Q 018543 221 SNR------SLRRAILSFETCRVQ 238 (354)
Q Consensus 221 s~g------d~R~ai~~L~~~~~~ 238 (354)
+.+ -..+|+.+++.++..
T Consensus 377 s~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 377 SHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred hhccccCCCCChHHHHHHHHHhcc
Confidence 543 355788888877754
No 136
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.64 E-value=5.6e-15 Score=149.10 Aligned_cols=201 Identities=15% Similarity=0.232 Sum_probs=141.3
Q ss_pred cccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (354)
++-++..++.++|.++.++.+..++.....++++|+||||||||++++.+|..+..........+
T Consensus 171 ~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~--------------- 235 (821)
T CHL00095 171 KEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED--------------- 235 (821)
T ss_pred HHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC---------------
Confidence 33456678999999999999999998777778999999999999999999998743221110000
Q ss_pred cccccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHHHH
Q 018543 85 ELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSL 150 (354)
Q Consensus 85 ~~~~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~L 150 (354)
...+.++.. .+.......++.+++++... ++.|+||||+|.+.. ++.+.|
T Consensus 236 -------~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~---------~~~ILfiDEih~l~~~g~~~g~~~~a~lL 299 (821)
T CHL00095 236 -------KLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQEN---------NNIILVIDEVHTLIGAGAAEGAIDAANIL 299 (821)
T ss_pred -------CeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhc---------CCeEEEEecHHHHhcCCCCCCcccHHHHh
Confidence 111222211 11111122455666555332 336999999987742 345666
Q ss_pred HHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHc
Q 018543 151 RRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKS 221 (354)
Q Consensus 151 l~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s 221 (354)
...+.. ....+|.+|+..+ ...+++.+||+.+.++.|+.++...+++..... .++.++++++..++..+
T Consensus 300 kp~l~r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls 377 (821)
T CHL00095 300 KPALAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS 377 (821)
T ss_pred HHHHhC--CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 666664 4577777777653 467899999999999999999998888765432 46779999999999988
Q ss_pred CC---C---HHHHHHHHHHHHhc
Q 018543 222 NR---S---LRRAILSFETCRVQ 238 (354)
Q Consensus 222 ~g---d---~R~ai~~L~~~~~~ 238 (354)
.| | +++|+.+|+.++..
T Consensus 378 ~~yi~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 378 DQYIADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred hccCccccCchHHHHHHHHHHHH
Confidence 75 3 77899999987754
No 137
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5e-15 Score=134.99 Aligned_cols=176 Identities=17% Similarity=0.248 Sum_probs=119.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHh-----------cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
-.+|+|+.|-+++++.|...++ .|++|. +||+||||+|||.+||++|++... ......|.+|.
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V---PFF~~sGSEFd-- 374 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV---PFFYASGSEFD-- 374 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC---CeEeccccchh--
Confidence 3579999999999998888774 378887 999999999999999999986521 11111222111
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-----------HH
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE 145 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~~ 145 (354)
++ +-......+|+++....... +.||||||+|... ..
T Consensus 375 -------------------Em----~VGvGArRVRdLF~aAk~~A---------PcIIFIDEiDavG~kR~~~~~~y~kq 422 (752)
T KOG0734|consen 375 -------------------EM----FVGVGARRVRDLFAAAKARA---------PCIIFIDEIDAVGGKRNPSDQHYAKQ 422 (752)
T ss_pred -------------------hh----hhcccHHHHHHHHHHHHhcC---------CeEEEEechhhhcccCCccHHHHHHH
Confidence 00 01112245888887655433 4899999999873 12
Q ss_pred HHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 018543 146 AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAE 219 (354)
Q Consensus 146 ~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~-~l~~i~~ 219 (354)
..|.|+--|+.+. ..+++|.+||-++.+.+++.+ |+ .+|..+.|+..-..+||+.++.+ +.++++ ....||+
T Consensus 423 TlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiAR 500 (752)
T KOG0734|consen 423 TLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIAR 500 (752)
T ss_pred HHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhcc
Confidence 3344555554443 456677788899999999987 44 36999999999999999998864 433322 2455566
Q ss_pred HcCC
Q 018543 220 KSNR 223 (354)
Q Consensus 220 ~s~g 223 (354)
-+.|
T Consensus 501 GT~G 504 (752)
T KOG0734|consen 501 GTPG 504 (752)
T ss_pred CCCC
Confidence 4444
No 138
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.63 E-value=7.9e-15 Score=146.81 Aligned_cols=178 Identities=18% Similarity=0.253 Sum_probs=120.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 75 (354)
..+|+++.|.+.+++.|+..+.. | +.|. +|||||||||||++|+++|+++..+ .+.+.+..
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~---fi~v~~~~--- 522 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN---FIAVRGPE--- 522 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC---EEEEehHH---
Confidence 34789999999999988887641 2 2333 9999999999999999999975211 11111100
Q ss_pred cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------
Q 018543 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------- 144 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------- 144 (354)
+. +.+-......++++++..... .+.||||||+|.+.+
T Consensus 523 ---------------------l~-~~~vGese~~i~~~f~~A~~~---------~p~iifiDEid~l~~~r~~~~~~~~~ 571 (733)
T TIGR01243 523 ---------------------IL-SKWVGESEKAIREIFRKARQA---------APAIIFFDEIDAIAPARGARFDTSVT 571 (733)
T ss_pred ---------------------Hh-hcccCcHHHHHHHHHHHHHhc---------CCEEEEEEChhhhhccCCCCCCccHH
Confidence 00 001111123466666654443 348999999988731
Q ss_pred -HHHHHHHHHHhh--ccCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 018543 145 -EAQHSLRRTMEK--YSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRL 217 (354)
Q Consensus 145 -~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~-~~l~~i 217 (354)
...+.|+..|+. ...++.+|.+||.++.+.+++.+ ||. .++|++|+.++...+++.... +..+++ ..++.+
T Consensus 572 ~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~--~~~~~~~~~l~~l 649 (733)
T TIGR01243 572 DRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR--SMPLAEDVDLEEL 649 (733)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc--CCCCCccCCHHHH
Confidence 244567777753 34567888899999999999986 885 699999999999999986654 344433 347888
Q ss_pred HHHcCCCH
Q 018543 218 AEKSNRSL 225 (354)
Q Consensus 218 ~~~s~gd~ 225 (354)
++.+.|--
T Consensus 650 a~~t~g~s 657 (733)
T TIGR01243 650 AEMTEGYT 657 (733)
T ss_pred HHHcCCCC
Confidence 88777643
No 139
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.1e-15 Score=142.41 Aligned_cols=185 Identities=20% Similarity=0.381 Sum_probs=131.7
Q ss_pred CCcccCHHHHHHHHHHHhc--------C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 13 DQVIVHQDIAQNLKKLVTE--------Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~--------~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
..++||++++..+...++. + ....++|.||.|+|||.+|+++|..+++.....+.+|..+|.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~--------- 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM--------- 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHH---------
Confidence 3579999999999988863 1 222499999999999999999999999988888888887775
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~----- 158 (354)
+-.+++. .+.-.|.-.|+..+..+.+.+ . ..++.||++||++..+++..|.|+++|++..
T Consensus 562 -EkHsVSr--LIGaPPGYVGyeeGG~LTEaV---R---------r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 562 -EKHSVSR--LIGAPPGYVGYEEGGQLTEAV---R---------RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred -HHHHHHH--HhCCCCCCceeccccchhHhh---h---------cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC
Confidence 1111111 122222222222222222222 1 1346899999999999999999999998642
Q ss_pred ------CceeEEEEecCCC----------------------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHH
Q 018543 159 ------ASCRLILCCNSSS----------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK 203 (354)
Q Consensus 159 ------~~~~~Il~~~~~~----------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~ 203 (354)
.++.+|+|||--+ .+.|.+..|.. +|.|.+++.+.+.+++...+.
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHH
Confidence 4677888888321 14466677776 899999999999988876443
Q ss_pred -------HcCC--CCCHHHHHHHHHHc
Q 018543 204 -------KEGL--QLPSGFATRLAEKS 221 (354)
Q Consensus 204 -------~~~~--~i~~~~l~~i~~~s 221 (354)
+.++ .+++++.++|++.+
T Consensus 707 ~l~~~L~~~~i~l~~s~~a~~~l~~~g 733 (786)
T COG0542 707 RLAKRLAERGITLELSDEAKDFLAEKG 733 (786)
T ss_pred HHHHHHHhCCceEEECHHHHHHHHHhc
Confidence 2344 57899999999965
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=6.9e-15 Score=145.20 Aligned_cols=204 Identities=15% Similarity=0.237 Sum_probs=134.1
Q ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543 8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 8 rP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
+--.++.++|.+..++.+...+.....++++|+||||+|||++++.++..+...+......++..+. ....
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~---------l~~~ 251 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS---------LDIG 251 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe---------ccHH
Confidence 3446778999988888888888776667799999999999999999998764332111111111111 0000
Q ss_pred ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------HHHHHHHHHHHhhcc
Q 018543 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRRTMEKYS 158 (354)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~Ll~~le~~~ 158 (354)
.+ +....+.......++.+++.+... ++.|+||||+|.+- .+..+.|...++.
T Consensus 252 ~l-------laG~~~~Ge~e~rl~~l~~~l~~~---------~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-- 313 (758)
T PRK11034 252 SL-------LAGTKYRGDFEKRFKALLKQLEQD---------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-- 313 (758)
T ss_pred HH-------hcccchhhhHHHHHHHHHHHHHhc---------CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--
Confidence 00 000111111112345555544332 23699999999771 2234445555554
Q ss_pred CceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Q 018543 159 ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS----- 224 (354)
Q Consensus 159 ~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~gd----- 224 (354)
....+|.+||..+ ...+++.+|++.|.+++|+.++...+|+.+..+ .++.++++++..++..+..-
T Consensus 314 g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~ 393 (758)
T PRK11034 314 GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_pred CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCcc
Confidence 3466676666543 468999999999999999999999999876543 47889999999998876542
Q ss_pred -HHHHHHHHHHHHhc
Q 018543 225 -LRRAILSFETCRVQ 238 (354)
Q Consensus 225 -~R~ai~~L~~~~~~ 238 (354)
+.+|+.+|+.++..
T Consensus 394 lPdKaidlldea~a~ 408 (758)
T PRK11034 394 LPDKAIDVIDEAGAR 408 (758)
T ss_pred ChHHHHHHHHHHHHh
Confidence 44899999988753
No 141
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.63 E-value=7.2e-15 Score=146.14 Aligned_cols=190 Identities=16% Similarity=0.221 Sum_probs=121.1
Q ss_pred CCcccccCCCCCC----------CcccCHHHHHHHHHHHhc------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc
Q 018543 1 MLWVDKYRPKTLD----------QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE 64 (354)
Q Consensus 1 ~~w~ekyrP~~~~----------~~~g~~~~~~~l~~~l~~------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 64 (354)
++| .+|.+.+++ +.+|++.+++.+..++.. .+.+.++|+||||+||||+++.+++.+. ....
T Consensus 301 ~pw-~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~-~~~~ 378 (784)
T PRK10787 301 VPW-NARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG-RKYV 378 (784)
T ss_pred CCC-CCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC-CCEE
Confidence 467 455554432 478999999988876652 2344599999999999999999998652 2211
Q ss_pred ccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH
Q 018543 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR 144 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~ 144 (354)
.+...+. . +...+.... ..+. +...+. ++..+.... ....|++|||+|.+++
T Consensus 379 ~i~~~~~--~----------d~~~i~g~~-~~~~----g~~~G~----~~~~l~~~~-------~~~~villDEidk~~~ 430 (784)
T PRK10787 379 RMALGGV--R----------DEAEIRGHR-RTYI----GSMPGK----LIQKMAKVG-------VKNPLFLLDEIDKMSS 430 (784)
T ss_pred EEEcCCC--C----------CHHHhccch-hccC----CCCCcH----HHHHHHhcC-------CCCCEEEEEChhhccc
Confidence 1111100 0 000000000 0011 111111 122222211 1236999999999987
Q ss_pred HH----HHHHHHHHhhc---------------cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHH-
Q 018543 145 EA----QHSLRRTMEKY---------------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK- 204 (354)
Q Consensus 145 ~~----~~~Ll~~le~~---------------~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~- 204 (354)
.. +++|+.+++.. -+++.||+++|.. .+++++++||.+|.|.+++.+++..+.++.+..
T Consensus 431 ~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k 509 (784)
T PRK10787 431 DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPK 509 (784)
T ss_pred ccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHH
Confidence 65 58999999641 1556777777665 699999999999999999999999998876631
Q ss_pred ---------cCCCCCHHHHHHHHHHc
Q 018543 205 ---------EGLQLPSGFATRLAEKS 221 (354)
Q Consensus 205 ---------~~~~i~~~~l~~i~~~s 221 (354)
..+.+++++++.|++..
T Consensus 510 ~~~~~~l~~~~l~i~~~ai~~ii~~y 535 (784)
T PRK10787 510 QIERNALKKGELTVDDSAIIGIIRYY 535 (784)
T ss_pred HHHHhCCCCCeEEECHHHHHHHHHhC
Confidence 13568899999999743
No 142
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=1e-14 Score=144.00 Aligned_cols=181 Identities=19% Similarity=0.317 Sum_probs=118.9
Q ss_pred CcccCHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543 14 QVIVHQDIAQNLKKLVTE--------QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~~--------~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (354)
.++||+++++.+...+.. ++ ..+++|+||||||||++|+.+|+.+. ...+.+++..+. ...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~---~~~i~id~se~~--~~~----- 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEYM--ERH----- 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC---CCcEEeechhhc--ccc-----
Confidence 478999999988888862 22 23499999999999999999999773 223344443332 000
Q ss_pred cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc------
Q 018543 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ 158 (354)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------ 158 (354)
.+. ..+...+...+......+.+. +.. .++.||++||+|.++++.++.|+++|++..
T Consensus 529 ~~~-----~LiG~~~gyvg~~~~g~L~~~---v~~---------~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g 591 (758)
T PRK11034 529 TVS-----RLIGAPPGYVGFDQGGLLTDA---VIK---------HPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNG 591 (758)
T ss_pred cHH-----HHcCCCCCcccccccchHHHH---HHh---------CCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCC
Confidence 000 001111111111111112222 111 234899999999999999999999998631
Q ss_pred -----CceeEEEEecCC-------------------------CcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHH----
Q 018543 159 -----ASCRLILCCNSS-------------------------SKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK---- 203 (354)
Q Consensus 159 -----~~~~~Il~~~~~-------------------------~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~---- 203 (354)
.++.+|++||.- ..+.|.+..|+. ++.|+|++.+++.+++...+.
T Consensus 592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~ 671 (758)
T PRK11034 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA 671 (758)
T ss_pred ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 356688888832 125588888986 899999999999998876543
Q ss_pred ---HcCC--CCCHHHHHHHHHHc
Q 018543 204 ---KEGL--QLPSGFATRLAEKS 221 (354)
Q Consensus 204 ---~~~~--~i~~~~l~~i~~~s 221 (354)
..|+ .+++++++.|++..
T Consensus 672 ~l~~~~i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 672 QLDQKGVSLEVSQEARDWLAEKG 694 (758)
T ss_pred HHHHCCCCceECHHHHHHHHHhC
Confidence 2344 57799999998753
No 143
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=2.7e-14 Score=144.06 Aligned_cols=198 Identities=18% Similarity=0.313 Sum_probs=128.5
Q ss_pred CCCcccCHHHHHHHHHHHhcC--------CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc
Q 018543 12 LDQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (354)
Q Consensus 12 ~~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
.+.++||+.+++.+...+... ++ .+++|+||+|+|||++|+++++.+++.....+.+++..+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~-------- 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM-------- 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh--------
Confidence 456899999998888887632 11 2499999999999999999999887655444555544332
Q ss_pred cccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc----
Q 018543 83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---- 158 (354)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---- 158 (354)
+-.. ....+...+...+......+.+ .+ .. .++.||+|||++.+++..++.|+++|++..
T Consensus 639 --~~~~--~~~LiG~~pgy~g~~~~g~l~~---~v-~~--------~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~ 702 (857)
T PRK10865 639 --EKHS--VSRLVGAPPGYVGYEEGGYLTE---AV-RR--------RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG 702 (857)
T ss_pred --hhhh--HHHHhCCCCcccccchhHHHHH---HH-Hh--------CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC
Confidence 0000 0000111111111111111111 11 11 234799999999999999999999997641
Q ss_pred -------CceeEEEEecCCC-------------------------cccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHH-
Q 018543 159 -------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK- 204 (354)
Q Consensus 159 -------~~~~~Il~~~~~~-------------------------~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~- 204 (354)
.++.+|++||... .+.|.+.+|+ .++.|.|++.+++..++...+.+
T Consensus 703 ~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 3455888888621 2457889999 78999999999999988776543
Q ss_pred ------cC--CCCCHHHHHHHHHHcCC---CHHHHHHHHH
Q 018543 205 ------EG--LQLPSGFATRLAEKSNR---SLRRAILSFE 233 (354)
Q Consensus 205 ------~~--~~i~~~~l~~i~~~s~g---d~R~ai~~L~ 233 (354)
.+ +.+++++++.|++..-. .+|-.-+.++
T Consensus 783 ~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~ 822 (857)
T PRK10865 783 YKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQ 822 (857)
T ss_pred HHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHH
Confidence 23 45789999999986421 3444444444
No 144
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.62 E-value=6.1e-15 Score=136.02 Aligned_cols=179 Identities=19% Similarity=0.315 Sum_probs=114.9
Q ss_pred cCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543 7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (354)
Q Consensus 7 yrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 73 (354)
....+++++.|.+..++.++..+.. | ..| +++|+||||||||++++++++++..+- +.+.+..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~---~~v~~~~- 191 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVVGSE- 191 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE---EecchHH-
Confidence 3445788999999999888887642 1 123 399999999999999999999762211 0010000
Q ss_pred cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----------
Q 018543 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------- 143 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------- 143 (354)
+.....+ .....+++.++.... ..+.||+|||+|.+.
T Consensus 192 -----------------------l~~~~~g-~~~~~i~~~f~~a~~---------~~p~il~iDEiD~l~~~~~~~~~~~ 238 (364)
T TIGR01242 192 -----------------------LVRKYIG-EGARLVREIFELAKE---------KAPSIIFIDEIDAIAAKRTDSGTSG 238 (364)
T ss_pred -----------------------HHHHhhh-HHHHHHHHHHHHHHh---------cCCcEEEhhhhhhhccccccCCCCc
Confidence 0000000 011123444433222 234799999999872
Q ss_pred -HHHHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 018543 144 -REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (354)
Q Consensus 144 -~~~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l 214 (354)
.+.+..+...+.+. ..++.+|++||.++.+.+++.+ |+ ..+.|++|+.++...+++.+.....+. ++..+
T Consensus 239 ~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~ 317 (364)
T TIGR01242 239 DREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDL 317 (364)
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCH
Confidence 34455566665332 3468899999999999999986 55 369999999999999998877544332 11246
Q ss_pred HHHHHHcCC
Q 018543 215 TRLAEKSNR 223 (354)
Q Consensus 215 ~~i~~~s~g 223 (354)
..+++.+.|
T Consensus 318 ~~la~~t~g 326 (364)
T TIGR01242 318 EAIAKMTEG 326 (364)
T ss_pred HHHHHHcCC
Confidence 777777665
No 145
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.62 E-value=8.3e-15 Score=129.93 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=107.0
Q ss_pred CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHH
Q 018543 33 DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ 111 (354)
Q Consensus 33 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 111 (354)
+.|. ++||||||||||.+++++|+++-.+ .+.+++.+ +.. .........+|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~---~i~vsa~e------------------------L~s-k~vGEsEk~IR 197 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE---PIVMSAGE------------------------LES-ENAGEPGKLIR 197 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC---eEEEEHHH------------------------hhc-CcCCcHHHHHH
Confidence 4444 9999999999999999999987321 12221111 111 11122234678
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-----------H-HHHHHHHHhh--------------ccCceeEEE
Q 018543 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------A-QHSLRRTMEK--------------YSASCRLIL 165 (354)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----------~-~~~Ll~~le~--------------~~~~~~~Il 165 (354)
+.+......... .+.+.||+|||+|.+.+. . ...|+..++. ....+.+|.
T Consensus 198 ~~F~~A~~~a~~----~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIa 273 (413)
T PLN00020 198 QRYREAADIIKK----KGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIV 273 (413)
T ss_pred HHHHHHHHHhhc----cCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEE
Confidence 887766543211 245689999999976321 1 1356666543 235577899
Q ss_pred EecCCCcccHHHhh--hcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q 018543 166 CCNSSSKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS 224 (354)
Q Consensus 166 ~~~~~~~l~~~l~s--R~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd 224 (354)
+||+++.+.+++++ |+..+ +..|+.++..++|+.++++.+ ++...+..|+....|-
T Consensus 274 TTNrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 274 TGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred eCCCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 99999999999999 77654 458999999999999887665 4578888899988763
No 146
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.62 E-value=2.9e-14 Score=144.40 Aligned_cols=200 Identities=18% Similarity=0.293 Sum_probs=134.0
Q ss_pred CCcccCHHHHHHHHHHHhcC--------CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~~--------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
..++||+.+++.+...+... ++. .++|+||+|+|||++|++++..+++.....+.+++..+.-..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~------ 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH------ 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc------
Confidence 46899999999888888642 222 399999999999999999999887765555555554332000
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~----- 158 (354)
.. ...+...+...+.... ..+...+.. .++.||++||++.++++.++.|+++|++..
T Consensus 639 -~~-----~~l~g~~~g~~g~~~~---g~l~~~v~~---------~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 639 -SV-----ARLIGAPPGYVGYEEG---GQLTEAVRR---------KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred -hH-----HHhcCCCCCccCcccc---cHHHHHHHc---------CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCC
Confidence 00 0001111111121111 112222221 234799999999999999999999997752
Q ss_pred ------CceeEEEEecCCCc-------------------------ccHHHhhhc-ceeeecCCCHHHHHHHHHHHHH---
Q 018543 159 ------ASCRLILCCNSSSK-------------------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAK--- 203 (354)
Q Consensus 159 ------~~~~~Il~~~~~~~-------------------------l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~--- 203 (354)
.++.+|++||-... +.|.+..|+ .++.|.|++.+++.+++.....
T Consensus 701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~ 780 (852)
T TIGR03346 701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLR 780 (852)
T ss_pred CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHH
Confidence 45668888886321 335566777 5799999999999998876553
Q ss_pred ----HcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 018543 204 ----KEG--LQLPSGFATRLAEKS---NRSLRRAILSFETCR 236 (354)
Q Consensus 204 ----~~~--~~i~~~~l~~i~~~s---~gd~R~ai~~L~~~~ 236 (354)
..+ +.+++++++.|++.. .+++|..-+.++...
T Consensus 781 ~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 781 KRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 222 568899999999973 477888877777553
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.61 E-value=2.8e-14 Score=142.47 Aligned_cols=182 Identities=20% Similarity=0.263 Sum_probs=120.0
Q ss_pred CCcccCHHHHHHHHHHHhc--------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 13 DQVIVHQDIAQNLKKLVTE--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~--------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
..++||+++++.+...+.. +++. +++|+||+|||||++|+++|+.+.+ ..+.+++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d~se~~--------- 521 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFDMSEYM--------- 521 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEeCchhh---------
Confidence 3578999999988888763 1222 3999999999999999999997732 22334433322
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~----- 158 (354)
+.. ....+..+..+.........+.+.+.. .++.||+|||+|.++++.++.|+++|++..
T Consensus 522 -~~~-----~~~~lig~~~gyvg~~~~~~l~~~~~~---------~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~ 586 (731)
T TIGR02639 522 -EKH-----TVSRLIGAPPGYVGFEQGGLLTEAVRK---------HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNN 586 (731)
T ss_pred -hcc-----cHHHHhcCCCCCcccchhhHHHHHHHh---------CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCC
Confidence 000 000011111111110111222222221 234899999999999999999999998641
Q ss_pred ------CceeEEEEecCCC-------------------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHH--
Q 018543 159 ------ASCRLILCCNSSS-------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK-- 204 (354)
Q Consensus 159 ------~~~~~Il~~~~~~-------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~-- 204 (354)
.++.+|+++|... .+.|.+.+|+. ++.|+|++.+++.+++...+.+
T Consensus 587 g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~ 666 (731)
T TIGR02639 587 GRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELS 666 (731)
T ss_pred CcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 3566888876532 25677888985 8999999999999999876652
Q ss_pred -----cC--CCCCHHHHHHHHHHc
Q 018543 205 -----EG--LQLPSGFATRLAEKS 221 (354)
Q Consensus 205 -----~~--~~i~~~~l~~i~~~s 221 (354)
.| +.+++++++.|++.+
T Consensus 667 ~~l~~~~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 667 KQLNEKNIKLELTDDAKKYLAEKG 690 (731)
T ss_pred HHHHhCCCeEEeCHHHHHHHHHhC
Confidence 22 567899999999864
No 148
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.4e-14 Score=119.21 Aligned_cols=162 Identities=22% Similarity=0.336 Sum_probs=113.2
Q ss_pred CCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
.+..|+-|.+-.++.++..++- | .+|. +|+|||||||||.+++++|+.- ....+.+.|.+|.
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~firvvgsefv-- 226 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV-- 226 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH--
Confidence 4778888877777777777641 3 2333 9999999999999999999853 1222333333332
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-----------CHH
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----------SRE 145 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-----------~~~ 145 (354)
-.+..+ .. ..+|++++...+.. +.||||||+|.+ +.+
T Consensus 227 ------------------qkylge----gp-rmvrdvfrlakena---------psiifideidaiatkrfdaqtgadre 274 (408)
T KOG0727|consen 227 ------------------QKYLGE----GP-RMVRDVFRLAKENA---------PSIIFIDEIDAIATKRFDAQTGADRE 274 (408)
T ss_pred ------------------HHHhcc----Cc-HHHHHHHHHHhccC---------CcEEEeehhhhHhhhhccccccccHH
Confidence 011111 11 23667765544433 479999999876 345
Q ss_pred HHHHHHHHHhh-----ccCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCC
Q 018543 146 AQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQ 208 (354)
Q Consensus 146 ~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~ 208 (354)
.|..|+.++.+ ...++.+|+.||..+.+.|++.+-. ..|+|+.|+..+.+-+...+..+.++.
T Consensus 275 vqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 275 VQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred HHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 67777777754 3568999999999999999998854 369999999999888888888776654
No 149
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.8e-14 Score=132.06 Aligned_cols=174 Identities=22% Similarity=0.333 Sum_probs=121.1
Q ss_pred CCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
.+|+|+-+.+++..+|..++-. | ..|. +|||||||||||.+|+++|++- ..+.+.+-
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa---g~NFisVK------- 577 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA---GANFISVK------- 577 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc---cCceEeec-------
Confidence 5789998999999999887742 2 2344 9999999999999999999974 11111111
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------H
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E 145 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~ 145 (354)
.++.+.. ..| .....+|.++....... +.|||+||+|.|.+ .
T Consensus 578 --------------GPELlNk---YVG-ESErAVR~vFqRAR~sa---------PCVIFFDEiDaL~p~R~~~~s~~s~R 630 (802)
T KOG0733|consen 578 --------------GPELLNK---YVG-ESERAVRQVFQRARASA---------PCVIFFDEIDALVPRRSDEGSSVSSR 630 (802)
T ss_pred --------------CHHHHHH---Hhh-hHHHHHHHHHHHhhcCC---------CeEEEecchhhcCcccCCCCchhHHH
Confidence 1111110 011 11235777776655433 48999999999943 3
Q ss_pred HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 018543 146 AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-ATRLAE 219 (354)
Q Consensus 146 ~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~-l~~i~~ 219 (354)
..|.|+.-|... ..++.+|.+||.|+-+.+++.+-. ..+.+..|+.++...+|+.+.+..+..+++++ ++.|+.
T Consensus 631 vvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 631 VVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred HHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence 567777777543 345777888999999999999854 35888899999999999998886666666554 777776
Q ss_pred H
Q 018543 220 K 220 (354)
Q Consensus 220 ~ 220 (354)
.
T Consensus 711 ~ 711 (802)
T KOG0733|consen 711 N 711 (802)
T ss_pred c
Confidence 4
No 150
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.4e-14 Score=136.21 Aligned_cols=194 Identities=16% Similarity=0.236 Sum_probs=124.1
Q ss_pred CcccCHHHHHHHHHHHhcCC------CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543 14 QVIVHQDIAQNLKKLVTEQD------CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~~~~------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
|-+|-+++++++...+.-++ .+-++|+||||+|||++++.+|+.|.. ....+.+.|. .+..
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-kFfRfSvGG~------------tDvA 478 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR-KFFRFSVGGM------------TDVA 478 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-ceEEEecccc------------ccHH
Confidence 56788899988888875322 223999999999999999999998722 1111111111 0111
Q ss_pred ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH----HHHHHHHHHh--hc----
Q 018543 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTME--KY---- 157 (354)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----~~~~Ll~~le--~~---- 157 (354)
.+...+ -.|...-+| .+-+.++.+.. ...+++|||+|.+... -..+|+.+|+ +.
T Consensus 479 eIkGHR-RTYVGAMPG-----kiIq~LK~v~t----------~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFl 542 (906)
T KOG2004|consen 479 EIKGHR-RTYVGAMPG-----KIIQCLKKVKT----------ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFL 542 (906)
T ss_pred hhcccc-eeeeccCCh-----HHHHHHHhhCC----------CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchh
Confidence 111111 111111111 12233333332 3468999999998532 2457888772 21
Q ss_pred ---------cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHH
Q 018543 158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----------KEGLQLPSGFATRLA 218 (354)
Q Consensus 158 ---------~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~----------~~~~~i~~~~l~~i~ 218 (354)
-+.+.||+++|..+.|++++++|..+|.++.+..++..++..+++- .+.++++++++..++
T Consensus 543 DHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI 622 (906)
T KOG2004|consen 543 DHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI 622 (906)
T ss_pred hhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHH
Confidence 1457899999999999999999999999999999999998887653 234678899988887
Q ss_pred HHcC--CCHHHHHHHHHHHH
Q 018543 219 EKSN--RSLRRAILSFETCR 236 (354)
Q Consensus 219 ~~s~--gd~R~ai~~L~~~~ 236 (354)
+.-. ..+|..-..++..+
T Consensus 623 ~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 623 ERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 7432 23555555554433
No 151
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.60 E-value=1.8e-13 Score=115.38 Aligned_cols=190 Identities=20% Similarity=0.292 Sum_probs=130.6
Q ss_pred cccCCCCCCCcccCHHHHHHHH----HHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLK----KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~----~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
....|..+++++|-+..++.|. ..++.....|+||+|+.|||||++++++..++...+..
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLR---------------- 82 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLR---------------- 82 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCce----------------
Confidence 4456788999999766655444 44444444459999999999999999999877443321
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCc-CCHHHHHHHHHHH----h
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTM----E 155 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~Ll~~l----e 155 (354)
.+++...+.. .+.++++.+... ..+-||++|+... -.......|..+| +
T Consensus 83 -------------lIev~k~~L~-----~l~~l~~~l~~~--------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle 136 (249)
T PF05673_consen 83 -------------LIEVSKEDLG-----DLPELLDLLRDR--------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLE 136 (249)
T ss_pred -------------EEEECHHHhc-----cHHHHHHHHhcC--------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccc
Confidence 2444433322 244555555532 2346899999642 1334456666666 4
Q ss_pred hccCceeEEEEecCCCcccH-----------------------HHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543 156 KYSASCRLILCCNSSSKVTE-----------------------AIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (354)
Q Consensus 156 ~~~~~~~~Il~~~~~~~l~~-----------------------~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~ 211 (354)
..|.++.+..|+|..+-+.+ +|.+|+ ..+.|.+|+.++-.++++..+.+.|+.+++
T Consensus 137 ~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~ 216 (249)
T PF05673_consen 137 ARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDE 216 (249)
T ss_pred cCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 56788888888886542222 344565 479999999999999999999999999984
Q ss_pred -----HHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543 212 -----GFATRLAEKSNRSLRRAILSFETCR 236 (354)
Q Consensus 212 -----~~l~~i~~~s~gd~R~ai~~L~~~~ 236 (354)
+++.......+.+.|.|-...+.+.
T Consensus 217 e~l~~~Al~wa~~rg~RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 217 EELRQEALQWALRRGGRSGRTARQFIDDLA 246 (249)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4556666677778999888776554
No 152
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.59 E-value=3.5e-13 Score=118.47 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=77.4
Q ss_pred eEEEEeCCCcCCHHHHHHHHHHHhhcc----------------CceeEEEEecCCC-----cccHHHhhhcceeeecCCC
Q 018543 132 KVLVLNEVDKLSREAQHSLRRTMEKYS----------------ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPT 190 (354)
Q Consensus 132 ~viiiDE~d~l~~~~~~~Ll~~le~~~----------------~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~ 190 (354)
.+++|||++.++++.++.|+..|++.. ++.++|+++|... .+.+++.+||..+.++.|+
T Consensus 107 ~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~ 186 (262)
T TIGR02640 107 FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPD 186 (262)
T ss_pred CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCC
Confidence 699999999999999999999997521 2566888888653 5688999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----------CCHHHHHHHHHHHHhc
Q 018543 191 EEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN----------RSLRRAILSFETCRVQ 238 (354)
Q Consensus 191 ~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~----------gd~R~ai~~L~~~~~~ 238 (354)
.++..+++.... .++++.++.+++... -.+|.++.+.+.+...
T Consensus 187 ~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~ 239 (262)
T TIGR02640 187 IDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQ 239 (262)
T ss_pred HHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHc
Confidence 999999998643 356777666665321 1266677666665544
No 153
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.7e-14 Score=134.96 Aligned_cols=194 Identities=16% Similarity=0.230 Sum_probs=122.7
Q ss_pred CcccCHHHHHHHHHHHhc------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543 14 QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~~------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
|-+|-++++.++...+.- -+.|-++|+||||+|||++++.+|+.+... .-.+.+.|..-. .++
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk-fvR~sLGGvrDE---------AEI- 392 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK-FVRISLGGVRDE---------AEI- 392 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC-EEEEecCccccH---------HHh-
Confidence 457778888877776631 223449999999999999999999977221 111111111000 011
Q ss_pred ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH----HHHHHHHHHh--hc----
Q 018543 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTME--KY---- 157 (354)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----~~~~Ll~~le--~~---- 157 (354)
.++ --.|..+-+| ..++. ++... ....+++|||+|.|+.+ =..+|+.+|+ +.
T Consensus 393 --RGH-RRTYIGamPG----rIiQ~-mkka~----------~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~ 454 (782)
T COG0466 393 --RGH-RRTYIGAMPG----KIIQG-MKKAG----------VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFS 454 (782)
T ss_pred --ccc-cccccccCCh----HHHHH-HHHhC----------CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchh
Confidence 000 0111111111 12222 22222 23468999999999643 3467888883 21
Q ss_pred ---------cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHH-----HHcC-----CCCCHHHHHHHH
Q 018543 158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA-----KKEG-----LQLPSGFATRLA 218 (354)
Q Consensus 158 ---------~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~-----~~~~-----~~i~~~~l~~i~ 218 (354)
-+++.||.++|..+.++.+|++|+.+|+++.++.++-.++.++++ .+.| +.++++++..|+
T Consensus 455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred hccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence 146889999999999999999999999999999999999888754 2333 468899999998
Q ss_pred HHcC--CCHHHHHHHHHHHH
Q 018543 219 EKSN--RSLRRAILSFETCR 236 (354)
Q Consensus 219 ~~s~--gd~R~ai~~L~~~~ 236 (354)
+.-. -.+|..-..+...|
T Consensus 535 ~~YTREAGVR~LeR~i~ki~ 554 (782)
T COG0466 535 RYYTREAGVRNLEREIAKIC 554 (782)
T ss_pred HHHhHhhhhhHHHHHHHHHH
Confidence 8532 23555555555444
No 154
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.57 E-value=2.5e-13 Score=115.45 Aligned_cols=102 Identities=29% Similarity=0.318 Sum_probs=91.2
Q ss_pred ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC-------------CCcccHHHhhhcceeeecCCCHHHHHHH
Q 018543 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS-------------SSKVTEAIRSRCLNIRINSPTEEQIVKV 197 (354)
Q Consensus 131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~-------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~ 197 (354)
+.|+||||+++|+-+....|.+.+|.+-. ..+||++|. |+.+++.+.+|..+|+-.++++++++.+
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 67999999999999999999999998643 567777774 3468999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHH
Q 018543 198 LEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFE 233 (354)
Q Consensus 198 L~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~ 233 (354)
++.+++.|++.++++++..+++.. ..++|.++.+|-
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~ 412 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLT 412 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcC
Confidence 999999999999999999999964 568999999987
No 155
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.4e-13 Score=121.28 Aligned_cols=175 Identities=22% Similarity=0.307 Sum_probs=116.1
Q ss_pred CCCCCcccCHHHHHHHHHHHh----------cCCCC--eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543 10 KTLDQVIVHQDIAQNLKKLVT----------EQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~----------~~~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 77 (354)
..++|+.|..++++.|+.++- ..+-| .+|++||||+|||.+|+++|.+.. ..|.
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-----------tTFF--- 274 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG-----------TTFF--- 274 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc-----------CeEE---
Confidence 478999999999999998762 23333 299999999999999999998641 1111
Q ss_pred CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------------HH
Q 018543 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------RE 145 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------------~~ 145 (354)
.++. ....+..+......+|-+++......| .+|||||+|.|. ..
T Consensus 275 -------NVSs-------stltSKwRGeSEKlvRlLFemARfyAP---------StIFiDEIDslcs~RG~s~EHEaSRR 331 (491)
T KOG0738|consen 275 -------NVSS-------STLTSKWRGESEKLVRLLFEMARFYAP---------STIFIDEIDSLCSQRGGSSEHEASRR 331 (491)
T ss_pred -------Eech-------hhhhhhhccchHHHHHHHHHHHHHhCC---------ceeehhhHHHHHhcCCCccchhHHHH
Confidence 0000 001122233333467777766555554 689999999883 22
Q ss_pred HHHHHHHHHhhcc-----CceeEEEE-ecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 018543 146 AQHSLRRTMEKYS-----ASCRLILC-CNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRL 217 (354)
Q Consensus 146 ~~~~Ll~~le~~~-----~~~~~Il~-~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i-~~~~l~~i 217 (354)
..+.|+-.|+... ...++|++ ||.|..|.+++++|+. .|.++-|+.+.....++.-+. .+.. ++-.++.|
T Consensus 332 vKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~--~~~~~~~~~~~~l 409 (491)
T KOG0738|consen 332 VKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLR--SVELDDPVNLEDL 409 (491)
T ss_pred HHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc--cccCCCCccHHHH
Confidence 4556777774321 23456664 5667799999999996 699999998888888776543 3333 34456777
Q ss_pred HHHcCC
Q 018543 218 AEKSNR 223 (354)
Q Consensus 218 ~~~s~g 223 (354)
++.+.|
T Consensus 410 ae~~eG 415 (491)
T KOG0738|consen 410 AERSEG 415 (491)
T ss_pred HHHhcC
Confidence 776655
No 156
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.56 E-value=5.1e-13 Score=118.38 Aligned_cols=200 Identities=17% Similarity=0.173 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeee
Q 018543 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (354)
+..+...+...++.+ .+.++++||+|+||||+++.+++.+.+.......+. . +..... --+..+. ..+.+
T Consensus 28 ~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~----~--~~~~~~-~~l~~i~--~~lG~ 97 (269)
T TIGR03015 28 HKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV----N--TRVDAE-DLLRMVA--ADFGL 97 (269)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee----C--CCCCHH-HHHHHHH--HHcCC
Confidence 344556666555543 223899999999999999999987643211000000 0 000000 0000000 00111
Q ss_pred CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---CceeEEEEecCCC---
Q 018543 98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---ASCRLILCCNSSS--- 171 (354)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---~~~~~Il~~~~~~--- 171 (354)
... +.......+.+...+.... ..++..+++|||++.++....+.|..+.+-.. ....++++. .+.
T Consensus 98 ~~~--~~~~~~~~~~l~~~l~~~~-----~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~ 169 (269)
T TIGR03015 98 ETE--GRDKAALLRELEDFLIEQF-----AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVG-QPEFRE 169 (269)
T ss_pred CCC--CCCHHHHHHHHHHHHHHHH-----hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcC-CHHHHH
Confidence 111 1111111222222221111 12445799999999999888777665443211 122344443 332
Q ss_pred ----cccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543 172 ----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG----LQLPSGFATRLAEKSNRSLRRAILSFETC 235 (354)
Q Consensus 172 ----~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~----~~i~~~~l~~i~~~s~gd~R~ai~~L~~~ 235 (354)
.-..++.+|+ ..+++++++.+++..++...+...| ..+++++++.|++.++|++|....+++.+
T Consensus 170 ~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 170 TLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 1234677885 5789999999999999999887655 36899999999999999999976666654
No 157
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.5e-13 Score=132.32 Aligned_cols=183 Identities=20% Similarity=0.280 Sum_probs=127.6
Q ss_pred CCCCCCCcccCHHHHHHHHHHHhc----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543 8 RPKTLDQVIVHQDIAQNLKKLVTE----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (354)
Q Consensus 8 rP~~~~~~~g~~~~~~~l~~~l~~----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 75 (354)
.+.+|+|+.|.++++..|...+.- | ++|. +||+||||||||.+|+++|.+. +...+.+++.+|
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEF-- 380 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEF-- 380 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---CCceeeechHHH--
Confidence 346899999999999988887741 2 5666 9999999999999999999874 122222233222
Q ss_pred cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------
Q 018543 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------- 144 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------- 144 (354)
++.... .....+++++....... +.+|+|||+|....
T Consensus 381 -------------------vE~~~g----~~asrvr~lf~~ar~~a---------P~iifideida~~~~r~G~~~~~~~ 428 (774)
T KOG0731|consen 381 -------------------VEMFVG----VGASRVRDLFPLARKNA---------PSIIFIDEIDAVGRKRGGKGTGGGQ 428 (774)
T ss_pred -------------------HHHhcc----cchHHHHHHHHHhhccC---------CeEEEecccccccccccccccCCCC
Confidence 222111 11235778876655443 37999999987631
Q ss_pred -H---HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhh--c-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 018543 145 -E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (354)
Q Consensus 145 -~---~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~ 215 (354)
+ ..|.|+--|+.. ..++.++..||.++-+.+++++- + ..|+...|+......+++.++.+.....++..+.
T Consensus 429 ~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~ 508 (774)
T KOG0731|consen 429 DEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLS 508 (774)
T ss_pred hHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHH
Confidence 2 234444444432 34567777888999999999884 4 3699999999999999999988766665666677
Q ss_pred HHHHHcCCCHHH
Q 018543 216 RLAEKSNRSLRR 227 (354)
Q Consensus 216 ~i~~~s~gd~R~ 227 (354)
.++....|.-..
T Consensus 509 ~~a~~t~gf~ga 520 (774)
T KOG0731|consen 509 KLASLTPGFSGA 520 (774)
T ss_pred HHHhcCCCCcHH
Confidence 788887775443
No 158
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.53 E-value=7.2e-13 Score=119.09 Aligned_cols=225 Identities=15% Similarity=0.182 Sum_probs=119.0
Q ss_pred cCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccc-cccccccccCCCcccccc
Q 018543 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK-VENKTWKIDAGSRNIDLE 85 (354)
Q Consensus 7 yrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 85 (354)
-.|..|++++||+++++.+.-.+-.....|+||.||||+||||+++++++.+-+....... +.+.... .++.......
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~-~~~~~~~~~~ 80 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE-DCPEWAHVSS 80 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc-CCcccccccC
Confidence 4588999999999999877754432234679999999999999999999965322111000 0000000 0000000000
Q ss_pred cccccc-CceeeeCC--CCCCCcchhHHHHHHHHHHhcCCCCCC---CCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-
Q 018543 86 LTTLSS-ANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTK---GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS- 158 (354)
Q Consensus 86 ~~~~~~-~~~i~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~- 158 (354)
...... ...+.+.. .+........+...+ ......... ......++++||++.+++..|+.|+..|++..
T Consensus 81 ~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l---~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v 157 (334)
T PRK13407 81 TTMIERPTPVVDLPLGVTEDRVVGALDIERAL---TRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN 157 (334)
T ss_pred CcccccCCccccCCCCCCcceeecchhhhhhh---hcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence 000000 00011110 111111111111111 111110001 12334699999999999999999999997642
Q ss_pred ----------CceeEEEEec-CC-C-cccHHHhhhcc-eeeecCCCH-HHHHHHHHHHHHH-------------------
Q 018543 159 ----------ASCRLILCCN-SS-S-KVTEAIRSRCL-NIRINSPTE-EQIVKVLEFIAKK------------------- 204 (354)
Q Consensus 159 ----------~~~~~Il~~~-~~-~-~l~~~l~sR~~-~i~~~~~~~-~~~~~~L~~~~~~------------------- 204 (354)
....|+++++ ++ + .+.+++.+|+. .+.++++.. ++..+++.+....
T Consensus 158 ~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLR 237 (334)
T ss_pred EEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCH
Confidence 1233444443 22 2 58889999985 577777765 6656666543210
Q ss_pred ----------cCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHH
Q 018543 205 ----------EGLQLPSGFATRLAEKS----NRSLRRAILSFETC 235 (354)
Q Consensus 205 ----------~~~~i~~~~l~~i~~~s----~gd~R~ai~~L~~~ 235 (354)
..+.++++.++++++.+ ..+.|..+.++..+
T Consensus 238 ~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA 282 (334)
T PRK13407 238 GRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAA 282 (334)
T ss_pred HHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 13456777776666532 13566666655543
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.52 E-value=7.3e-14 Score=109.82 Aligned_cols=115 Identities=26% Similarity=0.335 Sum_probs=77.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~ 116 (354)
++|+||||+|||++++.+|+.+. ...+.+++.... +.........++.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~~-------------------------~~~~~~~~~~i~~~~~~ 52 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSELI-------------------------SSYAGDSEQKIRDFFKK 52 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHHH-------------------------TSSTTHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---cccccccccccc-------------------------ccccccccccccccccc
Confidence 68999999999999999999761 111111111100 00111122345555555
Q ss_pred HHhcCCCCCCCCCCceEEEEeCCCcCCHHH-----------HHHHHHHHhhccC---ceeEEEEecCCCcccHHHh-hhc
Q 018543 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREA-----------QHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIR-SRC 181 (354)
Q Consensus 117 ~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-----------~~~Ll~~le~~~~---~~~~Il~~~~~~~l~~~l~-sR~ 181 (354)
..... .+.|++|||+|.+.... .+.|+..++.... ++.+|++||+.+.+.+++. +||
T Consensus 53 ~~~~~--------~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf 124 (132)
T PF00004_consen 53 AKKSA--------KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRF 124 (132)
T ss_dssp HHHTS--------TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTS
T ss_pred ccccc--------cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCC
Confidence 43322 24899999999997665 7788888877654 4889999999999999999 998
Q ss_pred c-eeeec
Q 018543 182 L-NIRIN 187 (354)
Q Consensus 182 ~-~i~~~ 187 (354)
. .+.|+
T Consensus 125 ~~~i~~~ 131 (132)
T PF00004_consen 125 DRRIEFP 131 (132)
T ss_dssp EEEEEE-
T ss_pred cEEEEcC
Confidence 6 46554
No 160
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-13 Score=115.30 Aligned_cols=168 Identities=20% Similarity=0.350 Sum_probs=114.1
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhc-----------C--CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 69 (354)
-+||....+.+-+-|.+..++.++..++- | .+..+|||||||+|||.+|+++|..-.| ..+.+.
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c---~firvs 213 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---TFIRVS 213 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce---EEEEec
Confidence 45666555555555567777778777642 2 2223999999999999999999985321 111111
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-------
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL------- 142 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l------- 142 (354)
+.+.. -.+. | .....+|+++-...+..| .+||+||+|.+
T Consensus 214 gselv--------------------qk~i----g-egsrmvrelfvmarehap---------siifmdeidsigs~r~e~ 259 (404)
T KOG0728|consen 214 GSELV--------------------QKYI----G-EGSRMVRELFVMAREHAP---------SIIFMDEIDSIGSSRVES 259 (404)
T ss_pred hHHHH--------------------HHHh----h-hhHHHHHHHHHHHHhcCC---------ceEeeecccccccccccC
Confidence 11100 0000 1 111246777766555443 79999999987
Q ss_pred ----CHHHHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCC
Q 018543 143 ----SREAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGL 207 (354)
Q Consensus 143 ----~~~~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~ 207 (354)
+.+.|..++.++.+. ..+..+|++||..+-+.+++.+-.. .|+||||+.+...++|+-+.++.++
T Consensus 260 ~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl 336 (404)
T KOG0728|consen 260 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL 336 (404)
T ss_pred CCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch
Confidence 356788888877643 4678999999999999999988553 5999999999999999987776544
No 161
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.4e-13 Score=118.53 Aligned_cols=183 Identities=25% Similarity=0.326 Sum_probs=115.6
Q ss_pred CCCCCcccCHHHHHHHHHHHh----------cC---CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVT----------EQ---DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~----------~~---~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 75 (354)
.+|+|+-|-+.+++.++..+- .| +.+ .+|++||||||||.+|+++|++..+.- +++...
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f---Inv~~s---- 161 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF---INVSVS---- 161 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCc---ceeecc----
Confidence 478999999999999988762 12 222 399999999999999999999763221 111111
Q ss_pred cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-------HHHHH
Q 018543 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------REAQH 148 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------~~~~~ 148 (354)
.+.+ .-+| .-+.+++.+-..+ ..=.+.+|+|||+|.+. .++..
T Consensus 162 ------------~lt~--------KWfg-----E~eKlv~AvFslA-----sKl~P~iIFIDEvds~L~~R~s~dHEa~a 211 (386)
T KOG0737|consen 162 ------------NLTS--------KWFG-----EAQKLVKAVFSLA-----SKLQPSIIFIDEVDSFLGQRRSTDHEATA 211 (386)
T ss_pred ------------ccch--------hhHH-----HHHHHHHHHHhhh-----hhcCcceeehhhHHHHHhhcccchHHHHH
Confidence 0000 0001 1112222221111 12356899999998764 22211
Q ss_pred HHHH-------HHh-hccCceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 018543 149 SLRR-------TME-KYSASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (354)
Q Consensus 149 ~Ll~-------~le-~~~~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~ 219 (354)
.+.. -+. +....+.+..+||.|..+.+++.+|. ..++++-|+.++..+||+-++..+.+. ++-.+..++.
T Consensus 212 ~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~ 290 (386)
T KOG0737|consen 212 MMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQ 290 (386)
T ss_pred HHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHH
Confidence 1111 111 11223445557888999999999995 789999999999999999999988876 3445788888
Q ss_pred HcCCCHHHHHH
Q 018543 220 KSNRSLRRAIL 230 (354)
Q Consensus 220 ~s~gd~R~ai~ 230 (354)
.+.|--..-+.
T Consensus 291 ~t~GySGSDLk 301 (386)
T KOG0737|consen 291 MTEGYSGSDLK 301 (386)
T ss_pred hcCCCcHHHHH
Confidence 88775444333
No 162
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.49 E-value=9.7e-13 Score=131.88 Aligned_cols=180 Identities=19% Similarity=0.281 Sum_probs=119.1
Q ss_pred CCCCCCcccCHHHHHHHHHHHhc-----------C-CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 75 (354)
..+|+|+.|.+..++.++.++.. | .. .+++|+||||||||++++++|+++..+ .+.+++..+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~---~i~i~~~~i~- 249 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY---FISINGPEIM- 249 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe---EEEEecHHHh-
Confidence 35799999999999888887742 1 12 239999999999999999999976211 1111111000
Q ss_pred cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-----------H
Q 018543 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------R 144 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~ 144 (354)
+.........++.+++..... .+.+|+|||+|.+. .
T Consensus 250 ------------------------~~~~g~~~~~l~~lf~~a~~~---------~p~il~iDEid~l~~~r~~~~~~~~~ 296 (733)
T TIGR01243 250 ------------------------SKYYGESEERLREIFKEAEEN---------APSIIFIDEIDAIAPKREEVTGEVEK 296 (733)
T ss_pred ------------------------cccccHHHHHHHHHHHHHHhc---------CCcEEEeehhhhhcccccCCcchHHH
Confidence 001111112355555544332 34799999998773 2
Q ss_pred HHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 018543 145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLA 218 (354)
Q Consensus 145 ~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~-~~~l~~i~ 218 (354)
..++.|+..|+.... .+.+|.++|.++.+.+++++ |+ ..+.|+.|+.++...+|+.... +..+. +..++.++
T Consensus 297 ~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la 374 (733)
T TIGR01243 297 RVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLA 374 (733)
T ss_pred HHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHH
Confidence 356778888865433 35566688888899999987 55 4699999999999999986554 44443 34578888
Q ss_pred HHcCCCHHH
Q 018543 219 EKSNRSLRR 227 (354)
Q Consensus 219 ~~s~gd~R~ 227 (354)
+.+.|-...
T Consensus 375 ~~t~G~~ga 383 (733)
T TIGR01243 375 EVTHGFVGA 383 (733)
T ss_pred HhCCCCCHH
Confidence 888775444
No 163
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.9e-13 Score=110.76 Aligned_cols=175 Identities=18% Similarity=0.305 Sum_probs=114.8
Q ss_pred CCCCCcccCHHHHHHHHHHHh-----------cC-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
.+.+|+-|.+..++.|..++- -| ++|. +|+|||||+|||.+||+.|..-...
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--------------- 232 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--------------- 232 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch---------------
Confidence 368888888888877776652 13 3333 9999999999999999998753110
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-----------CHH
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----------SRE 145 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-----------~~~ 145 (354)
+-.+..++.+.+... .....+|+.+.-.. ...+.||||||+|.+ +.+
T Consensus 233 ---------FLKLAgPQLVQMfIG----dGAkLVRDAFaLAK---------EkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 233 ---------FLKLAGPQLVQMFIG----DGAKLVRDAFALAK---------EKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred ---------HHHhcchHHHhhhhc----chHHHHHHHHHHhh---------ccCCeEEEEechhhhccccccccccccHH
Confidence 000111111111111 11123455443222 234589999999977 356
Q ss_pred HHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543 146 AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (354)
Q Consensus 146 ~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i 217 (354)
.|..++.++.+. ...+.+|..||..+-+.|++.+.. ..|+||.|+.+...++++-+.++.++. ++-..+.+
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeEL 369 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEEL 369 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHH
Confidence 778888877653 346789999999999999987654 369999999999999999888776664 12235666
Q ss_pred HHHcC
Q 018543 218 AEKSN 222 (354)
Q Consensus 218 ~~~s~ 222 (354)
++...
T Consensus 370 aRsTd 374 (424)
T KOG0652|consen 370 ARSTD 374 (424)
T ss_pred hhccc
Confidence 66543
No 164
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.6e-13 Score=114.80 Aligned_cols=176 Identities=22% Similarity=0.268 Sum_probs=114.4
Q ss_pred CCCCcccCHHHHHHHHHHHh----------cCCCCe--EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543 11 TLDQVIVHQDIAQNLKKLVT----------EQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~----------~~~~~~--~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 78 (354)
.++|+.|.+.+++.|+..+- .++.|- +|||||||+|||.+|+++|.+.. .. ...+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-ST--FFSv---------- 197 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-ST--FFSV---------- 197 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-Cc--eEEe----------
Confidence 68999999999999998662 344443 99999999999999999998652 11 0000
Q ss_pred CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----H-------HH
Q 018543 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----E-------AQ 147 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----~-------~~ 147 (354)
++.+.+. .-.|- ....+++++....+. ++.||||||+|.+.. + ..
T Consensus 198 -----------SSSDLvS---KWmGE-SEkLVknLFemARe~---------kPSIIFiDEiDslcg~r~enEseasRRIK 253 (439)
T KOG0739|consen 198 -----------SSSDLVS---KWMGE-SEKLVKNLFEMAREN---------KPSIIFIDEIDSLCGSRSENESEASRRIK 253 (439)
T ss_pred -----------ehHHHHH---HHhcc-HHHHHHHHHHHHHhc---------CCcEEEeehhhhhccCCCCCchHHHHHHH
Confidence 0000000 00111 112456666554443 457999999998831 1 12
Q ss_pred HHHHHHHhh---ccCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 018543 148 HSLRRTMEK---YSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR 223 (354)
Q Consensus 148 ~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~g 223 (354)
..|+-.|.. -...+.++..||-+..+..+||+|+. .|++|.|.........+-++...-..+++..+..+++.+.|
T Consensus 254 TEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 254 TEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred HHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCC
Confidence 234444432 12344455567777899999999995 69998888777777766555444456788999999997765
No 165
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.49 E-value=3e-12 Score=115.38 Aligned_cols=219 Identities=14% Similarity=0.155 Sum_probs=119.3
Q ss_pred CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc-----CCCccccccc
Q 018543 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID-----AGSRNIDLEL 86 (354)
Q Consensus 12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 86 (354)
|..++||++++..+...+-.....|++|.|+||+||||+++++++.+ ....+.+..... ..+. |..|+.-.+.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~ 80 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL-PEIKAVAGCPFN-SSPSDPEMMCEEVRIRVDS 80 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh-cccccccCCCCC-CCCCCccccChHHhhhhhc
Confidence 78899999999877655545556789999999999999999999854 221111110000 0000 1111110000
Q ss_pred -ccc----ccCceeeeCC--CCCCCcchhHHHHHHHHHHhcCCCC---CCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543 87 -TTL----SSANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPID---TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (354)
Q Consensus 87 -~~~----~~~~~i~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~ 156 (354)
.+. ......++.. .+........+...+ ....... .-...+..++++||++.+++..|+.|+..|++
T Consensus 81 ~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l---~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~ 157 (337)
T TIGR02030 81 QEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERAL---TEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAAS 157 (337)
T ss_pred ccccccccCCCCcCCCCCCCcccceecchhHhhHh---hcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHh
Confidence 000 0000112111 111111111122111 1111100 00124457999999999999999999999976
Q ss_pred cc-----------CceeEEEEecC-C-C-cccHHHhhhcc-eeeecCCCH-HHHHHHHHHHHH-----------------
Q 018543 157 YS-----------ASCRLILCCNS-S-S-KVTEAIRSRCL-NIRINSPTE-EQIVKVLEFIAK----------------- 203 (354)
Q Consensus 157 ~~-----------~~~~~Il~~~~-~-~-~l~~~l~sR~~-~i~~~~~~~-~~~~~~L~~~~~----------------- 203 (354)
.. ...+|+++++. + + .+.+++.+|+. .+.+.++.. ++..+++++...
T Consensus 158 g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~ 237 (337)
T TIGR02030 158 GWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQE 237 (337)
T ss_pred CCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhh
Confidence 31 12334444443 3 2 68899999986 477777765 665666655211
Q ss_pred ------------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH
Q 018543 204 ------------KEGLQLPSGFATRLAEKS---NR-SLRRAILSFETC 235 (354)
Q Consensus 204 ------------~~~~~i~~~~l~~i~~~s---~g-d~R~ai~~L~~~ 235 (354)
-..+.++++.++++++.+ +. +.|..+.++..+
T Consensus 238 ~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raA 285 (337)
T TIGR02030 238 ALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAA 285 (337)
T ss_pred cCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 024567777777776632 32 467777776644
No 166
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.2e-13 Score=128.19 Aligned_cols=181 Identities=20% Similarity=0.290 Sum_probs=117.7
Q ss_pred ccCCCCCCCcccCHHHHHHHHHHHhc----------CCC-Ce-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543 6 KYRPKTLDQVIVHQDIAQNLKKLVTE----------QDC-PH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (354)
Q Consensus 6 kyrP~~~~~~~g~~~~~~~l~~~l~~----------~~~-~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 73 (354)
|..-.+++|+-|-++++..+...++- |-. .. +|||||||||||.+|+++|.++-
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------------- 730 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------------- 730 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------------
Confidence 34445899999999999999988752 211 22 99999999999999999998751
Q ss_pred cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH--------
Q 018543 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-------- 145 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-------- 145 (354)
+++-.+..++.+.+.- | .....+|++++...+. .+.|||+||+|.+.++
T Consensus 731 ----------L~FlSVKGPELLNMYV---G-qSE~NVR~VFerAR~A---------~PCVIFFDELDSlAP~RG~sGDSG 787 (953)
T KOG0736|consen 731 ----------LNFLSVKGPELLNMYV---G-QSEENVREVFERARSA---------APCVIFFDELDSLAPNRGRSGDSG 787 (953)
T ss_pred ----------eeEEeecCHHHHHHHh---c-chHHHHHHHHHHhhcc---------CCeEEEeccccccCccCCCCCCcc
Confidence 1222333333332211 1 1223588888765554 3489999999999543
Q ss_pred -----HHHHHHHHHhhcc----CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHH-HHHHHHHHHHHcCCCCCHH
Q 018543 146 -----AQHSLRRTMEKYS----ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQ-IVKVLEFIAKKEGLQLPSG 212 (354)
Q Consensus 146 -----~~~~Ll~~le~~~----~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~-~~~~L~~~~~~~~~~i~~~ 212 (354)
....|+.-|+..+ ..+-+|.+||.|+-+.|++.+ |+. .+++.+..+++ ..++|+..-++ +.++++
T Consensus 788 GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLded 865 (953)
T KOG0736|consen 788 GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDED 865 (953)
T ss_pred ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCC
Confidence 4456666665443 345566688899999999998 454 46777765544 44555554444 334443
Q ss_pred -HHHHHHHHcCCCH
Q 018543 213 -FATRLAEKSNRSL 225 (354)
Q Consensus 213 -~l~~i~~~s~gd~ 225 (354)
.+..||+.+.-++
T Consensus 866 VdL~eiAk~cp~~~ 879 (953)
T KOG0736|consen 866 VDLVEIAKKCPPNM 879 (953)
T ss_pred cCHHHHHhhCCcCC
Confidence 3777888765443
No 167
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.48 E-value=7e-11 Score=107.57 Aligned_cols=211 Identities=16% Similarity=0.198 Sum_probs=158.8
Q ss_pred CCceEEEEeCCCcCC-HHHHHHHHHHHhhcc-CceeEEEEecCCC---cccHHHhhh--cceeeecCCCHHHHHHHHHHH
Q 018543 129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYS-ASCRLILCCNSSS---KVTEAIRSR--CLNIRINSPTEEQIVKVLEFI 201 (354)
Q Consensus 129 ~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~-~~~~~Il~~~~~~---~l~~~l~sR--~~~i~~~~~~~~~~~~~L~~~ 201 (354)
++.++++|..++... .+....+......+| ....+++.++..+ +..+.+.+- +.++.+.+++..++.+|+...
T Consensus 73 ~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 152 (334)
T COG1466 73 GEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKR 152 (334)
T ss_pred cCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHH
Confidence 455899999987764 555666666666666 5555555555544 233333332 668999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHH
Q 018543 202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY--PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVR 277 (354)
Q Consensus 202 ~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~--~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 277 (354)
+.+.|+.+++++++.++...+||++.+.+.++.++.... .++.++ .......+..++++++.+.. ++..++.
T Consensus 153 ~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~----g~~~~a~ 228 (334)
T COG1466 153 AKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLK----GDVKKAL 228 (334)
T ss_pred HHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHC----CCHHHHH
Confidence 999999999999999999999999999999998887643 355444 23333445567899999988 6777888
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHH------------------------------------hCCHHHHHHHHHHHHHHh
Q 018543 278 GKLYELLLNCVPPVVVLKRLLYELLK------------------------------------RLDAEIKHEVCHWAAYYE 321 (354)
Q Consensus 278 ~~~~~l~~~~~~~~~il~~l~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~ 321 (354)
..+++++.+|++|..|+..+.+++.. +++.+...+.+..+.+.+
T Consensus 229 ~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~l~~l~~~d 308 (334)
T COG1466 229 RLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKALRLLAQLD 308 (334)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 99999999999999988765555431 245555566778888999
Q ss_pred hHhhCCCC-hhHhHHHHHHHHHH
Q 018543 322 HKMRRGNK-AIFHLEAFVAKFMS 343 (354)
Q Consensus 322 ~~l~~~~~-~~l~l~~~i~~~~~ 343 (354)
..++.|.. +.+.++.++.+++.
T Consensus 309 ~~~K~~~~d~~~~l~~~l~~~~~ 331 (334)
T COG1466 309 YQIKTGYGDPVWALELFLLRLLE 331 (334)
T ss_pred HHHhcCCccchHHHHHHHHHHhh
Confidence 99998885 57778888877765
No 168
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.47 E-value=3.1e-12 Score=123.93 Aligned_cols=201 Identities=17% Similarity=0.171 Sum_probs=130.3
Q ss_pred ccCCCCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 6 KYRPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 6 kyrP~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+++..++++++|+....+.+...++. ....+++|+|++||||+++|+++...........+.++|..+.
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~--------- 259 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS--------- 259 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC---------
Confidence 45667899999998777766665543 2333499999999999999999987543223233333332111
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHH-HHHHH----HHhc--CCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQ-EVIKE----MAKN--RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~-~~~~~----~~~~--~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~ 156 (354)
+ ..+. +++.. +... .........+..+++|||++.|+...|..|++.+++
T Consensus 260 ----------------------~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~ 316 (534)
T TIGR01817 260 ----------------------E-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQE 316 (534)
T ss_pred ----------------------H-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhc
Confidence 0 0000 00000 0000 000000123446899999999999999999999976
Q ss_pred cc-----------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCC--HHHHHHHHHHHHHH----cC--CC
Q 018543 157 YS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIAKK----EG--LQ 208 (354)
Q Consensus 157 ~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~~L~~~~~~----~~--~~ 208 (354)
.. .++++|++|+... .+.+.+..|+. .|.+||+. .+++..++.+.+.+ .+ +.
T Consensus 317 ~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~ 396 (534)
T TIGR01817 317 GEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT 396 (534)
T ss_pred CcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCC
Confidence 32 1367888776542 45667777764 57788886 56666655554432 22 57
Q ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543 209 LPSGFATRLAEKS-NRSLRRAILSFETCRVQ 238 (354)
Q Consensus 209 i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~ 238 (354)
+++++++.+..+. .||+|+..+.++.++..
T Consensus 397 ~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 397 ITPSAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 8999999999974 99999999999987754
No 169
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.47 E-value=1.2e-12 Score=128.54 Aligned_cols=196 Identities=17% Similarity=0.254 Sum_probs=126.7
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
.+.....+|+++.|.+..+..+...+.. +..|. ++|+||||+|||++++++++++..+ .+.+++.
T Consensus 143 ~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~---f~~is~~ 219 (644)
T PRK10733 143 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGS 219 (644)
T ss_pred CchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC---EEEEehH
Confidence 3334456788999988887777665531 23343 9999999999999999999876221 1111111
Q ss_pred cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------
Q 018543 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------- 144 (354)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------- 144 (354)
.+. +.. .+ .....+++.+..... ..+.||||||+|.+..
T Consensus 220 ~~~---------------------~~~---~g-~~~~~~~~~f~~a~~---------~~P~IifIDEiD~l~~~r~~~~~ 265 (644)
T PRK10733 220 DFV---------------------EMF---VG-VGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAGLG 265 (644)
T ss_pred HhH---------------------Hhh---hc-ccHHHHHHHHHHHHh---------cCCcEEEehhHhhhhhccCCCCC
Confidence 110 000 01 111235555544332 2347999999998732
Q ss_pred -------HHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543 145 -------EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (354)
Q Consensus 145 -------~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~ 212 (354)
...+.|+..|+... ..+.+|.+||.++.+.+++.+ |+ ..+.|+.|+.++...+++.++.+..+.- +.
T Consensus 266 g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~ 344 (644)
T PRK10733 266 GGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DI 344 (644)
T ss_pred CCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cC
Confidence 13345555565443 356778889999999999986 77 4799999999999999998886544321 22
Q ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHh
Q 018543 213 FATRLAEKSNR----SLRRAILSFETCRV 237 (354)
Q Consensus 213 ~l~~i~~~s~g----d~R~ai~~L~~~~~ 237 (354)
.+..+++.+.| |+...++.....+.
T Consensus 345 d~~~la~~t~G~sgadl~~l~~eAa~~a~ 373 (644)
T PRK10733 345 DAAIIARGTPGFSGADLANLVNEAALFAA 373 (644)
T ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Confidence 35668888777 77777776554443
No 170
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.47 E-value=1.5e-12 Score=104.04 Aligned_cols=138 Identities=30% Similarity=0.424 Sum_probs=89.2
Q ss_pred ccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (354)
Q Consensus 16 ~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (354)
+|++.....+...+......+++++||||+|||++++.+++.+.......+.++
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-------------------------- 54 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-------------------------- 54 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe--------------------------
Confidence 367778888888887655567999999999999999999997742221111111
Q ss_pred eeCCCCCCCcchhHHHHHHH----HHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc------cCceeEEE
Q 018543 96 ELSPSDAGFQDRYVVQEVIK----EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------SASCRLIL 165 (354)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~------~~~~~~Il 165 (354)
........ ....... ....... ...+..++++||++.+.......++..++.. ...+.+|+
T Consensus 55 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~ 125 (151)
T cd00009 55 ---ASDLLEGL--VVAELFGHFLVRLLFELA----EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIG 125 (151)
T ss_pred ---hhhhhhhh--HHHHHhhhhhHhHHHHhh----ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEE
Confidence 11100000 0000000 0000000 1235689999999999888888888888775 35678888
Q ss_pred EecCCC--cccHHHhhhc-ceeeecC
Q 018543 166 CCNSSS--KVTEAIRSRC-LNIRINS 188 (354)
Q Consensus 166 ~~~~~~--~l~~~l~sR~-~~i~~~~ 188 (354)
+++... .+.+.+.+|| ..+.+++
T Consensus 126 ~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 126 ATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred ecCccccCCcChhHHhhhccEeecCC
Confidence 888877 7889999999 6676653
No 171
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.46 E-value=3.3e-12 Score=118.22 Aligned_cols=179 Identities=22% Similarity=0.286 Sum_probs=105.1
Q ss_pred CCC-cccCHHHHHHHHHHHhc-------C---------CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543 12 LDQ-VIVHQDIAQNLKKLVTE-------Q---------DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (354)
Q Consensus 12 ~~~-~~g~~~~~~~l~~~l~~-------~---------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 74 (354)
+++ ++||+++++.+...+.. + ...++||+||||||||++|+.+|+.+..+- +.+++..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf---~~id~~~-- 143 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF---AIADATT-- 143 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc---eecchhh--
Confidence 443 79999999888665521 1 124599999999999999999998762211 1111110
Q ss_pred ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----------
Q 018543 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------- 144 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---------- 144 (354)
+....+... .+...+..+........ ....+.||+|||+|.++.
T Consensus 144 ----------------------l~~~gyvG~---d~e~~l~~l~~~~~~~~-~~a~~gIi~iDEIdkl~~~~~~~~~~~d 197 (412)
T PRK05342 144 ----------------------LTEAGYVGE---DVENILLKLLQAADYDV-EKAQRGIVYIDEIDKIARKSENPSITRD 197 (412)
T ss_pred ----------------------cccCCcccc---hHHHHHHHHHHhccccH-HHcCCcEEEEechhhhccccCCCCcCCC
Confidence 111111111 12222222211111100 123558999999999975
Q ss_pred ----HHHHHHHHHHhhcc-----C--------ceeEEEEecC--------C-----------------------------
Q 018543 145 ----EAQHSLRRTMEKYS-----A--------SCRLILCCNS--------S----------------------------- 170 (354)
Q Consensus 145 ----~~~~~Ll~~le~~~-----~--------~~~~Il~~~~--------~----------------------------- 170 (354)
..|++|+++||... . ...+|.++|- .
T Consensus 198 ~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~ 277 (412)
T PRK05342 198 VSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRT 277 (412)
T ss_pred cccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccch
Confidence 38999999997421 0 1112222221 0
Q ss_pred -C--------------cccHHHhhhcc-eeeecCCCHHHHHHHHHH----HH-------HHcCC--CCCHHHHHHHHHHc
Q 018543 171 -S--------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEF----IA-------KKEGL--QLPSGFATRLAEKS 221 (354)
Q Consensus 171 -~--------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~----~~-------~~~~~--~i~~~~l~~i~~~s 221 (354)
. .+.|.+..|+. ++.|.+++.+++.+++.. .. ...++ .++++++++|++.+
T Consensus 278 ~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 278 EGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred hHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 0 13566666774 689999999999999972 22 23344 57899999999964
No 172
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.3e-12 Score=115.50 Aligned_cols=151 Identities=15% Similarity=0.274 Sum_probs=100.1
Q ss_pred CCCCCCCcccCHHHHHHHHH----HHhc-------CCCC--eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543 8 RPKTLDQVIVHQDIAQNLKK----LVTE-------QDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (354)
Q Consensus 8 rP~~~~~~~g~~~~~~~l~~----~l~~-------~~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 74 (354)
+|.+|+.++-.+++++.+.. +++. |+.= .+|||||||||||+++-|+|+.| ..+
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-~yd------------ 262 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-NYD------------ 262 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-CCc------------
Confidence 57899999887776655554 4432 2211 29999999999999999999976 111
Q ss_pred ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---HH------
Q 018543 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---RE------ 145 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---~~------ 145 (354)
.-.+..+...... .++.++- .+ .+..||+|+++|.-- ..
T Consensus 263 -------------------IydLeLt~v~~n~--dLr~LL~---~t--------~~kSIivIEDIDcs~~l~~~~~~~~~ 310 (457)
T KOG0743|consen 263 -------------------IYDLELTEVKLDS--DLRHLLL---AT--------PNKSILLIEDIDCSFDLRERRKKKKE 310 (457)
T ss_pred -------------------eEEeeeccccCcH--HHHHHHH---hC--------CCCcEEEEeecccccccccccccccc
Confidence 0111111222221 2444432 21 244799999998641 10
Q ss_pred ---------HHHHHHHHHhhcc----CceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHH
Q 018543 146 ---------AQHSLRRTMEKYS----ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAK 203 (354)
Q Consensus 146 ---------~~~~Ll~~le~~~----~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~ 203 (354)
....||..+.-.- ...++||+||+.+++.|+|.++. .+|++..-+.+..+....+.+.
T Consensus 311 ~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 311 NFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 2235777776542 34579999999999999999954 3699999999999888887764
No 173
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.1e-12 Score=124.16 Aligned_cols=177 Identities=21% Similarity=0.302 Sum_probs=120.6
Q ss_pred CCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
.+++++.|.+.++..++..+.. + +.+ .+||+||||||||.+|+++|.+... ..+.+.+.
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~---~fi~v~~~----- 310 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS---RFISVKGS----- 310 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC---eEEEeeCH-----
Confidence 4788888888888777776631 2 233 3999999999999999999985411 11111110
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-----------HH
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE 145 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~~ 145 (354)
++.....+ .....+++++...... .+.||||||+|.+- ..
T Consensus 311 -------------------~l~sk~vG-esek~ir~~F~~A~~~---------~p~iiFiDEiDs~~~~r~~~~~~~~~r 361 (494)
T COG0464 311 -------------------ELLSKWVG-ESEKNIRELFEKARKL---------APSIIFIDEIDSLASGRGPSEDGSGRR 361 (494)
T ss_pred -------------------HHhccccc-hHHHHHHHHHHHHHcC---------CCcEEEEEchhhhhccCCCCCchHHHH
Confidence 11111111 1123466666554433 34799999999872 24
Q ss_pred HHHHHHHHHh--hccCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 018543 146 AQHSLRRTME--KYSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRLAE 219 (354)
Q Consensus 146 ~~~~Ll~~le--~~~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~-i~~~~l~~i~~ 219 (354)
..+.|+..|. +...++.+|.+||.++.+.+++.+ |+. .+.|++|+.++..++++......+.. .++-.++.+++
T Consensus 362 ~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~ 441 (494)
T COG0464 362 VVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE 441 (494)
T ss_pred HHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH
Confidence 6677787774 334567788899999999999999 875 69999999999999999988765554 23456777777
Q ss_pred HcCC
Q 018543 220 KSNR 223 (354)
Q Consensus 220 ~s~g 223 (354)
.+.|
T Consensus 442 ~t~~ 445 (494)
T COG0464 442 ITEG 445 (494)
T ss_pred HhcC
Confidence 6655
No 174
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.3e-13 Score=113.34 Aligned_cols=179 Identities=18% Similarity=0.289 Sum_probs=120.8
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVK 67 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 67 (354)
||-+|.-...+..|+-|-++.+..++..++. | .+|. +|+|||||+|||.+|+++|+.- +.-
T Consensus 165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dac--- 238 (435)
T KOG0729|consen 165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DAC--- 238 (435)
T ss_pred EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---Cce---
Confidence 4556666667899999999988888887752 3 2333 9999999999999999999742 111
Q ss_pred cccccccccCCCccccccccccccCceeeeCCCCC----CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-
Q 018543 68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA----GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL- 142 (354)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l- 142 (354)
++....++. -......+|+++..... .+..+||+||+|.+
T Consensus 239 --------------------------firvigselvqkyvgegarmvrelf~mart---------kkaciiffdeidaig 283 (435)
T KOG0729|consen 239 --------------------------FIRVIGSELVQKYVGEGARMVRELFEMART---------KKACIIFFDEIDAIG 283 (435)
T ss_pred --------------------------EEeehhHHHHHHHhhhhHHHHHHHHHHhcc---------cceEEEEeecccccc
Confidence 111111110 01111246676654332 23479999999876
Q ss_pred ----------CHHHHHHHHHHHhh-----ccCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHH
Q 018543 143 ----------SREAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKK 204 (354)
Q Consensus 143 ----------~~~~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~ 204 (354)
+.+.|..++.++.+ +..+..+.+.||.++.+.|++.+-. ..++|..|+-+....+++-+++.
T Consensus 284 garfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks 363 (435)
T KOG0729|consen 284 GARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS 363 (435)
T ss_pred CccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc
Confidence 34577788888754 4578899999999999999998754 35999999988888888765544
Q ss_pred cCCCCCHHH-HHHHHHHcC
Q 018543 205 EGLQLPSGF-ATRLAEKSN 222 (354)
Q Consensus 205 ~~~~i~~~~-l~~i~~~s~ 222 (354)
..+ +.+. .+.|++.|.
T Consensus 364 msv--erdir~ellarlcp 380 (435)
T KOG0729|consen 364 MSV--ERDIRFELLARLCP 380 (435)
T ss_pred ccc--ccchhHHHHHhhCC
Confidence 333 2222 444555543
No 175
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.1e-12 Score=114.68 Aligned_cols=157 Identities=24% Similarity=0.408 Sum_probs=105.7
Q ss_pred CCCcccCHHHHHHHHHHHhc--------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 12 LDQVIVHQDIAQNLKKLVTE--------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 12 ~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
|+++|-++.+.+.+...... ..+.+++||||||+|||.+|+-+|+.- |
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-----------G------------- 409 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-----------G------------- 409 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-----------C-------------
Confidence 89999999888888776532 334459999999999999999999852 1
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---------CHHHHHHHHHHH
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHSLRRTM 154 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~~~~~Ll~~l 154 (354)
+++..++.+++- ..|......+-++++..... .+.-++||||+|.+ +.....+|-.+|
T Consensus 410 lDYA~mTGGDVA-----PlG~qaVTkiH~lFDWakkS--------~rGLllFIDEADAFLceRnktymSEaqRsaLNAlL 476 (630)
T KOG0742|consen 410 LDYAIMTGGDVA-----PLGAQAVTKIHKLFDWAKKS--------RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL 476 (630)
T ss_pred CceehhcCCCcc-----ccchHHHHHHHHHHHHHhhc--------ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHH
Confidence 111112221110 01111112344555443322 23478999999875 233333333333
Q ss_pred ---hhccCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHc
Q 018543 155 ---EKYSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKE 205 (354)
Q Consensus 155 ---e~~~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~ 205 (354)
-+.+....+++.+|.|..+..++-+|+. +++|+.|..++..++|..++++.
T Consensus 477 fRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 477 FRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred HHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 3456678899999999999999999994 89999999999999998877653
No 176
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=7.2e-13 Score=112.64 Aligned_cols=161 Identities=20% Similarity=0.322 Sum_probs=111.8
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 69 (354)
-+||-.-.++.|+-|.+..++.++..++- | ++|. +++||+||+|||.+|+++|+.--. ..+.+-
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA---TFlRvv 251 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA---TFLRVV 251 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch---hhhhhh
Confidence 35666667899999999999999988852 3 2333 999999999999999999984311 111111
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------ 143 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------ 143 (354)
+.+.. -.+. | .....+|++++...... +.|+||||+|.+.
T Consensus 252 GseLi--------------------Qkyl----G-dGpklvRqlF~vA~e~a---------pSIvFiDEIdAiGtKRyds 297 (440)
T KOG0726|consen 252 GSELI--------------------QKYL----G-DGPKLVRELFRVAEEHA---------PSIVFIDEIDAIGTKRYDS 297 (440)
T ss_pred hHHHH--------------------HHHh----c-cchHHHHHHHHHHHhcC---------CceEEeehhhhhccccccC
Confidence 11000 0011 1 11135777776554443 3799999999873
Q ss_pred -----HHHHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHH
Q 018543 144 -----REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEF 200 (354)
Q Consensus 144 -----~~~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~ 200 (354)
.+.|..++.++.+. ...+.+|++||..+.+.|++.+-. ..|.|+.|+....++++.-
T Consensus 298 ~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 298 NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred CCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 35677788877653 356899999999999999998754 3599999998888777653
No 177
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.42 E-value=3e-12 Score=110.73 Aligned_cols=203 Identities=18% Similarity=0.275 Sum_probs=110.6
Q ss_pred cccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc--------c-
Q 018543 15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL--------E- 85 (354)
Q Consensus 15 ~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 85 (354)
++|.+...+.|..++.++...+++++||.|+|||++++.+.+.+...+...+++...... ........ .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEES--NESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBS--HHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccch--hhhHHHHHHHHHHHHHHH
Confidence 578888899999999988777899999999999999999998763322222222211000 00000000 0
Q ss_pred ---cc-ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------HHHHHHHHHHHh
Q 018543 86 ---LT-TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------REAQHSLRRTME 155 (354)
Q Consensus 86 ---~~-~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------~~~~~~Ll~~le 155 (354)
.. .........+.. .........+..+++.+.... ..-+|+|||++.+. +.....|...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~--------~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 79 SEALGISIPSITLEKISK-DLSEDSFSALERLLEKLKKKG--------KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp HHHHHHHCCTSTTEEEEC-TS-GG-G--HHHHHHHHHHCH--------CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred HHHHhhhcccccchhhhh-cchhhHHHHHHHHHHHHHhcC--------CcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 00 000000000000 011111123555555554422 23799999998887 455667777776
Q ss_pred h--ccCceeEEEEecCCC------cccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Q 018543 156 K--YSASCRLILCCNSSS------KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL--PSGFATRLAEKSNRSL 225 (354)
Q Consensus 156 ~--~~~~~~~Il~~~~~~------~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i--~~~~l~~i~~~s~gd~ 225 (354)
. ...+..+|++++..+ .-..++..|+..+.+++++.++..+++.....+. ..+ +++.++.+...++|.+
T Consensus 150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 6 234566666665532 1223466788889999999999999999877655 544 8999999999999998
Q ss_pred HHHH
Q 018543 226 RRAI 229 (354)
Q Consensus 226 R~ai 229 (354)
+...
T Consensus 229 ~~l~ 232 (234)
T PF01637_consen 229 RYLQ 232 (234)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 178
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.9e-12 Score=116.56 Aligned_cols=178 Identities=23% Similarity=0.262 Sum_probs=123.0
Q ss_pred cccCCCCCCCcccCHHHHHHHHHHHhc------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 72 (354)
+.-++..++|+.|.+.+++.+...+-- .....+|+.||||+|||.+++++|.+....
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at----------- 213 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT----------- 213 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcce-----------
Confidence 345677899999999988888776531 112239999999999999999999875221
Q ss_pred ccccCCCccccccccccccCceeeeCCCCCC----CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----
Q 018543 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---- 144 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---- 144 (354)
| ..+.++... ......++.+++- +.. .++.|+||||+|.+-.
T Consensus 214 f---------------------f~iSassLtsK~~Ge~eK~vralf~v-Ar~--------~qPsvifidEidslls~Rs~ 263 (428)
T KOG0740|consen 214 F---------------------FNISASSLTSKYVGESEKLVRALFKV-ARS--------LQPSVIFIDEIDSLLSKRSD 263 (428)
T ss_pred E---------------------eeccHHHhhhhccChHHHHHHHHHHH-HHh--------cCCeEEEechhHHHHhhcCC
Confidence 1 111121111 1112345555543 322 3558999999998721
Q ss_pred -------HHH-HHHHHHH---hhccCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543 145 -------EAQ-HSLRRTM---EKYSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (354)
Q Consensus 145 -------~~~-~~Ll~~l---e~~~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~ 212 (354)
... +.|+... -.+..++.+|.+||.+..+.++++.|++ ++.++.|+.+....++++.+.+.+..+.+.
T Consensus 264 ~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~ 343 (428)
T KOG0740|consen 264 NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDL 343 (428)
T ss_pred cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHH
Confidence 111 2233332 1223467788889999999999999986 688999999999999999998887788889
Q ss_pred HHHHHHHHcCC
Q 018543 213 FATRLAEKSNR 223 (354)
Q Consensus 213 ~l~~i~~~s~g 223 (354)
.+..+++.+.|
T Consensus 344 d~~~l~~~Teg 354 (428)
T KOG0740|consen 344 DISLLAKVTEG 354 (428)
T ss_pred HHHHHHHHhcC
Confidence 99999997665
No 179
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.41 E-value=1.6e-11 Score=110.59 Aligned_cols=222 Identities=16% Similarity=0.192 Sum_probs=125.3
Q ss_pred ccCCC-CCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543 6 KYRPK-TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (354)
Q Consensus 6 kyrP~-~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (354)
+-+|. .|++++||++++..|...+-+..+..++|.||+|+||||+++.+++.+.+...-. -+ .|. +.+.+..+.
T Consensus 9 ~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~--~~--pf~-~~p~~p~~~ 83 (350)
T CHL00081 9 KERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVK--DD--PFN-SHPSDPELM 83 (350)
T ss_pred ccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccC--CC--CCC-CCCCChhhh
Confidence 34554 7999999999999998887777777799999999999999999988664322110 00 111 011100000
Q ss_pred --cccccc-----------cCceeeeCC--CCCCCcchhHHHHHHHHHHhcCCCCCC---CCCCceEEEEeCCCcCCHHH
Q 018543 85 --ELTTLS-----------SANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTK---GKRGFKVLVLNEVDKLSREA 146 (354)
Q Consensus 85 --~~~~~~-----------~~~~i~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~viiiDE~d~l~~~~ 146 (354)
.+.... ....+.+.. .+........+... +......... ...+..++++||++.+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~a---l~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~ 160 (350)
T CHL00081 84 SDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKA---LTEGVKAFEPGLLAKANRGILYVDEVNLLDDHL 160 (350)
T ss_pred chhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHH---hhcCcccccCCeeeecCCCEEEecChHhCCHHH
Confidence 000000 000011110 11111111111111 1111110000 13455799999999999999
Q ss_pred HHHHHHHHhhcc-----------CceeEEEEecCC-C--cccHHHhhhcc-eeeecCCC-HHHHHHHHHHHHH-------
Q 018543 147 QHSLRRTMEKYS-----------ASCRLILCCNSS-S--KVTEAIRSRCL-NIRINSPT-EEQIVKVLEFIAK------- 203 (354)
Q Consensus 147 ~~~Ll~~le~~~-----------~~~~~Il~~~~~-~--~l~~~l~sR~~-~i~~~~~~-~~~~~~~L~~~~~------- 203 (354)
|..|+..|++.. ...+|+++++.. . .+.+++.+|+. .+.+..|+ .++..+++++...
T Consensus 161 Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~ 240 (350)
T CHL00081 161 VDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQE 240 (350)
T ss_pred HHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhh
Confidence 999999997621 123455554432 2 68999999985 57787776 4666666654321
Q ss_pred ----------------------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH
Q 018543 204 ----------------------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETC 235 (354)
Q Consensus 204 ----------------------~~~~~i~~~~l~~i~~~s---~-gd~R~ai~~L~~~ 235 (354)
-..+.++++.++++++.+ + -+.|..+.++..+
T Consensus 241 ~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raA 298 (350)
T CHL00081 241 FREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAA 298 (350)
T ss_pred hhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHH
Confidence 024567777777776643 2 2577777766643
No 180
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.41 E-value=1.5e-11 Score=105.18 Aligned_cols=105 Identities=26% Similarity=0.282 Sum_probs=88.9
Q ss_pred ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC------------CCcccHHHhhhcceeeecCCCHHHHHHHH
Q 018543 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS------------SSKVTEAIRSRCLNIRINSPTEEQIVKVL 198 (354)
Q Consensus 131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~L 198 (354)
+.|+||||+|+|+-+....|.+.+|+-- ...+|+.||. ++.++-.+.+|..+|.-.|++.+++.++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDM-APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhcc-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 6799999999999999999999998732 1334445542 34688999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 018543 199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCR 236 (354)
Q Consensus 199 ~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~ 236 (354)
+.+|++|++.+++++++.+.... ..++|-|++++-...
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~ 406 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAAS 406 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999998864 458999999987543
No 181
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.40 E-value=1.5e-11 Score=111.39 Aligned_cols=110 Identities=20% Similarity=0.187 Sum_probs=84.6
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhc--ceeeecCC
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSP 189 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~ 189 (354)
+..+++|||++.|+...|..|++++++.. .++++|++++... .+.+.+..|+ ..|.+||+
T Consensus 93 ~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpL 172 (329)
T TIGR02974 93 DGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPL 172 (329)
T ss_pred CCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCch
Confidence 44789999999999999999999997632 3467888877542 4667888887 46888888
Q ss_pred C--HHHHHHHHHHHH----HHcC----CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Q 018543 190 T--EEQIVKVLEFIA----KKEG----LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 190 ~--~~~~~~~L~~~~----~~~~----~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~~ 239 (354)
. .+++..++.+.+ .+.| ..+++++++.+..+. .||+|+..+.++.++...
T Consensus 173 ReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 173 RERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 7 466666555543 3333 358999999999976 999999999999887653
No 182
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.7e-12 Score=119.45 Aligned_cols=184 Identities=22% Similarity=0.315 Sum_probs=119.9
Q ss_pred CCCCCcccCHHHHHHHHHHHh-----------cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543 10 KTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 77 (354)
.+|.|+.|.++++..+...+. .+++|. ++++||||+|||.+|+++|.+.--| ...
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP---Ff~---------- 213 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP---FFS---------- 213 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC---cee----------
Confidence 589999999999988887764 246666 9999999999999999999865211 111
Q ss_pred CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------------
Q 018543 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------- 144 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------------- 144 (354)
.+..+++++.. ......+|+++.+.....| .|++|||+|....
T Consensus 214 -----------iSGS~FVemfV----GvGAsRVRdLF~qAkk~aP---------~IIFIDEiDAvGr~Rg~g~Gggnder 269 (596)
T COG0465 214 -----------ISGSDFVEMFV----GVGASRVRDLFEQAKKNAP---------CIIFIDEIDAVGRQRGAGLGGGNDER 269 (596)
T ss_pred -----------ccchhhhhhhc----CCCcHHHHHHHHHhhccCC---------CeEEEehhhhcccccCCCCCCCchHH
Confidence 12222233221 1122458888877555433 7999999998742
Q ss_pred -HHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543 145 -EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (354)
Q Consensus 145 -~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~ 218 (354)
...|.|+-.|+-... .+.++..||.++-+++++.+ |+ ..|..+.|+......+|+-++....+.- +-.+..++
T Consensus 270 EQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~-~Vdl~~iA 348 (596)
T COG0465 270 EQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE-DVDLKKIA 348 (596)
T ss_pred HHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC-cCCHHHHh
Confidence 244566666665543 34444456667777788876 33 4688999999999999997766544431 12244477
Q ss_pred HHcCC----CHHHHHHH
Q 018543 219 EKSNR----SLRRAILS 231 (354)
Q Consensus 219 ~~s~g----d~R~ai~~ 231 (354)
+.+.| |+-..+|.
T Consensus 349 r~tpGfsGAdL~nl~NE 365 (596)
T COG0465 349 RGTPGFSGADLANLLNE 365 (596)
T ss_pred hhCCCcccchHhhhHHH
Confidence 76554 44444444
No 183
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.37 E-value=2.3e-11 Score=111.99 Aligned_cols=189 Identities=21% Similarity=0.215 Sum_probs=110.0
Q ss_pred cccCHHHHHHHHHHHh-------c---CC--------CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 15 VIVHQDIAQNLKKLVT-------E---QD--------CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 15 ~~g~~~~~~~l~~~l~-------~---~~--------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
++||+++++.+...+. . .. ..++||+||||+|||++|+++|+.+..+- ..+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf---~~~-------- 147 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF---AIA-------- 147 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe---EEe--------
Confidence 4899999988876651 1 11 23699999999999999999998652110 000
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH------------
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------ 144 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------------ 144 (354)
+.. .+.+..+-.. .....+.......+..+ ....+.+|+|||+|.+++
T Consensus 148 --------da~--------~L~~~gyvG~---d~e~~L~~~~~~~~~~l-~~a~~gIV~lDEIdkl~~~~~~~s~~~dvs 207 (413)
T TIGR00382 148 --------DAT--------TLTEAGYVGE---DVENILLKLLQAADYDV-EKAQKGIIYIDEIDKISRKSENPSITRDVS 207 (413)
T ss_pred --------chh--------hccccccccc---cHHHHHHHHHHhCcccH-HhcccceEEecccchhchhhcccccccccc
Confidence 100 0111111111 12222222222111111 112446999999999876
Q ss_pred --HHHHHHHHHHhhcc-------------CceeEEEEecCC---------------------------C-----------
Q 018543 145 --EAQHSLRRTMEKYS-------------ASCRLILCCNSS---------------------------S----------- 171 (354)
Q Consensus 145 --~~~~~Ll~~le~~~-------------~~~~~Il~~~~~---------------------------~----------- 171 (354)
+.|+.|+++||... .++.+|.|+|-. .
T Consensus 208 g~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~ 287 (413)
T TIGR00382 208 GEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADL 287 (413)
T ss_pred chhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHH
Confidence 68999999996321 123344444430 0
Q ss_pred ------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHH----HH-------HcCC--CCCHHHHHHHHHHcC---
Q 018543 172 ------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFI----AK-------KEGL--QLPSGFATRLAEKSN--- 222 (354)
Q Consensus 172 ------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~----~~-------~~~~--~i~~~~l~~i~~~s~--- 222 (354)
.+.|.+..|+. ++.|.|++.+++.+++..- .+ ..|+ .+++++++.|++.+-
T Consensus 288 ~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~ 367 (413)
T TIGR00382 288 LRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERK 367 (413)
T ss_pred HHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCC
Confidence 14466667774 6889999999999998752 22 1243 578999999999642
Q ss_pred CCHHHHHHHHHH
Q 018543 223 RSLRRAILSFET 234 (354)
Q Consensus 223 gd~R~ai~~L~~ 234 (354)
-.+|..-..++.
T Consensus 368 ~GAR~Lr~iie~ 379 (413)
T TIGR00382 368 TGARGLRSIVEG 379 (413)
T ss_pred CCchHHHHHHHH
Confidence 224444444443
No 184
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.37 E-value=2.4e-10 Score=106.10 Aligned_cols=153 Identities=13% Similarity=0.179 Sum_probs=91.7
Q ss_pred CcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc
Q 018543 14 QVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN 93 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
.++|++++++.+...+..+. |++|.||||+|||++|++++....... ......+. |
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~-f-------------------- 76 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTR-F-------------------- 76 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC-cceeeeee-e--------------------
Confidence 46889999998888877664 599999999999999999998652211 00000000 0
Q ss_pred eeeeCCCC-CCCcchhHHHHHH--HHHHh-cCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---------Cc
Q 018543 94 HVELSPSD-AGFQDRYVVQEVI--KEMAK-NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------AS 160 (354)
Q Consensus 94 ~i~~~~~~-~~~~~~~~i~~~~--~~~~~-~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---------~~ 160 (354)
..+.+ .|. ..+.... ..+.. ... .-....++|+||+..+++..|++|+..|++.. -.
T Consensus 77 ---ttp~DLfG~---l~i~~~~~~g~f~r~~~G----~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp 146 (498)
T PRK13531 77 ---STPEEVFGP---LSIQALKDEGRYQRLTSG----YLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIP 146 (498)
T ss_pred ---cCcHHhcCc---HHHhhhhhcCchhhhcCC----ccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCC
Confidence 00111 010 0011110 00100 000 01123599999999999999999999996532 12
Q ss_pred eeEEEEecCC-C---cccHHHhhhcc-eeeecCCC-HHHHHHHHHH
Q 018543 161 CRLILCCNSS-S---KVTEAIRSRCL-NIRINSPT-EEQIVKVLEF 200 (354)
Q Consensus 161 ~~~Il~~~~~-~---~l~~~l~sR~~-~i~~~~~~-~~~~~~~L~~ 200 (354)
.+++++++++ . ...+++.+|+. .+.+++|+ .++..++|..
T Consensus 147 ~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 147 MRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred CcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 4465555542 2 24458999985 48888887 4555777754
No 185
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.36 E-value=1.9e-11 Score=126.84 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-----HHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhh
Q 018543 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS 179 (354)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~s 179 (354)
++.+++.+.... |.||+|||+|.+... ..+.|+..|... ..++.+|.+||.|+.++|++.+
T Consensus 1721 Ir~lFelARk~S---------PCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLR 1791 (2281)
T CHL00206 1721 ITLQFELAKAMS---------PCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIA 1791 (2281)
T ss_pred HHHHHHHHHHCC---------CeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcC
Confidence 566665544433 489999999999743 245666777532 3456778888999999999998
Q ss_pred --hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHcCCC-HHHHHHHHH
Q 018543 180 --RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG--FATRLAEKSNRS-LRRAILSFE 233 (354)
Q Consensus 180 --R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~--~l~~i~~~s~gd-~R~ai~~L~ 233 (354)
|+. .|.++.|+..+..+++.......|+.++++ .++.+|+.+.|- .++.-+++.
T Consensus 1792 PGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1792 PNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 663 688988888787777765444456665543 378888887763 333334433
No 186
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=5.6e-12 Score=113.98 Aligned_cols=205 Identities=18% Similarity=0.187 Sum_probs=127.2
Q ss_pred CCcccCHHHHHHHHHHHh----cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc--ccccccccccccCCCccccccc
Q 018543 13 DQVIVHQDIAQNLKKLVT----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNIDLEL 86 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~----~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
..+.|.+.-...++.|+. .+....+.+.|-||+|||.+...+...+-+.... .++++|.... .+.. -+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~--~~~a----iF 223 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT--EASA----IF 223 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc--chHH----HH
Confidence 456676666666666654 3455569999999999999998776655433322 1233322111 0000 00
Q ss_pred cccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc---cCceeE
Q 018543 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---SASCRL 163 (354)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~---~~~~~~ 163 (354)
..+ +-.+. ++..... .-++....+..... .....-++++||.|.|....+..|+.++|-+ ..+..+
T Consensus 224 ~kI----~~~~~-q~~~s~~--~~~~~~~~~~~h~~----q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iL 292 (529)
T KOG2227|consen 224 KKI----FSSLL-QDLVSPG--TGMQHLEKFEKHTK----QSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIIL 292 (529)
T ss_pred HHH----HHHHH-HHhcCCc--hhHHHHHHHHHHHh----cccceEEEEechhhHHhhcccceeeeehhcccCCcceeee
Confidence 000 00000 0000000 01222222222111 1224568999999999888888888887653 456778
Q ss_pred EEEecCCC---cccHHHhhhc----ceeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH---cCCCHHHHHHHH
Q 018543 164 ILCCNSSS---KVTEAIRSRC----LNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEK---SNRSLRRAILSF 232 (354)
Q Consensus 164 Il~~~~~~---~l~~~l~sR~----~~i~~~~~~~~~~~~~L~~~~~~~~~~i-~~~~l~~i~~~---s~gd~R~ai~~L 232 (354)
|.++|..+ ++++.|..|+ ..+.|+|++.+++.+||+..+..+.... -+.+++.+|+. ..||+|+|+..+
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence 88889875 7889999976 4799999999999999999888765543 34577777774 579999999988
Q ss_pred HH
Q 018543 233 ET 234 (354)
Q Consensus 233 ~~ 234 (354)
+.
T Consensus 373 R~ 374 (529)
T KOG2227|consen 373 RR 374 (529)
T ss_pred HH
Confidence 73
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.1e-11 Score=118.62 Aligned_cols=203 Identities=16% Similarity=0.297 Sum_probs=141.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
--.++-++|.++.++.+.+.+.....++-+|.|+||+|||.++..+|..+...+....-.+.+.+. .++..
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s---------LD~g~ 236 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS---------LDLGS 236 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE---------ecHHH
Confidence 345777999998888888888776666688999999999999999999886544322111111111 01000
Q ss_pred cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------HHHHHHHHHHHhhccC
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRRTMEKYSA 159 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~Ll~~le~~~~ 159 (354)
+ .....+.......++.+++++.... .-|+||||+|.+- -++.|.|...|.. .
T Consensus 237 L-------vAGakyRGeFEeRlk~vl~ev~~~~---------~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--G 298 (786)
T COG0542 237 L-------VAGAKYRGEFEERLKAVLKEVEKSK---------NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--G 298 (786)
T ss_pred H-------hccccccCcHHHHHHHHHHHHhcCC---------CeEEEEechhhhcCCCcccccccchhhhhHHHHhc--C
Confidence 0 1112223333345666666665432 4799999998772 3366777777764 4
Q ss_pred ceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Q 018543 160 SCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS------ 224 (354)
Q Consensus 160 ~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~gd------ 224 (354)
..++|.+|+..+ .-.+++.+|++.|....|+.++...+|+....+ .++.++++++.+.+..|...
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~L 378 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFL 378 (786)
T ss_pred CeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCC
Confidence 477788777554 456899999999999999999999999876654 47899999999999987543
Q ss_pred HHHHHHHHHHHHhc
Q 018543 225 LRRAILSFETCRVQ 238 (354)
Q Consensus 225 ~R~ai~~L~~~~~~ 238 (354)
+.+||.+++.+++.
T Consensus 379 PDKAIDLiDeA~a~ 392 (786)
T COG0542 379 PDKAIDLLDEAGAR 392 (786)
T ss_pred CchHHHHHHHHHHH
Confidence 34799999987754
No 188
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.34 E-value=4.2e-11 Score=117.68 Aligned_cols=219 Identities=12% Similarity=0.083 Sum_probs=120.0
Q ss_pred CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc-ccccccc-cccccCCCcccccccccc
Q 018543 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-KVKVENK-TWKIDAGSRNIDLELTTL 89 (354)
Q Consensus 12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 89 (354)
|.+++||++++..+...+-.....++||.||+|+|||+++++++..+-..... ...+.|. ... |+.|..|..+...
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~--~~~~~~~~~~~~~ 80 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP--EEWCEECRRKYRP 80 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc--cccChhhhhcccc
Confidence 77999999999988877777777779999999999999999999855100000 0000000 000 1111111111111
Q ss_pred cc---CceeeeCCC--CCCCcchhHHHHHHHHHHhcCCCCCC---CCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543 90 SS---ANHVELSPS--DAGFQDRYVVQEVIKEMAKNRPIDTK---GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (354)
Q Consensus 90 ~~---~~~i~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~--- 158 (354)
.. ..++.+... .........+...+ ......... ......+++|||++.|++..|+.|+..|++..
T Consensus 81 ~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l---~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v 157 (633)
T TIGR02442 81 SEQRPVPFVNLPLGATEDRVVGSLDIERAL---REGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRV 157 (633)
T ss_pred cccCCCCeeeCCCCCcHHHcCCcccHHHHh---hcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEE
Confidence 11 112222111 00000101111111 110000000 12345799999999999999999999998641
Q ss_pred ----------CceeEEEEecCCC-cccHHHhhhcc-eeeecCCC-HHHHHHHHHHHHH----------------------
Q 018543 159 ----------ASCRLILCCNSSS-KVTEAIRSRCL-NIRINSPT-EEQIVKVLEFIAK---------------------- 203 (354)
Q Consensus 159 ----------~~~~~Il~~~~~~-~l~~~l~sR~~-~i~~~~~~-~~~~~~~L~~~~~---------------------- 203 (354)
.++.+|.++|..+ .+.+++.+|+. .+.++++. .++..+++.+...
T Consensus 158 ~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (633)
T TIGR02442 158 EREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNR 237 (633)
T ss_pred EECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHH
Confidence 2344555544322 57899999985 46666554 3443344332110
Q ss_pred -------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH
Q 018543 204 -------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETC 235 (354)
Q Consensus 204 -------~~~~~i~~~~l~~i~~~s---~-gd~R~ai~~L~~~ 235 (354)
...+.++++.++.+++.+ + ..+|..+.++..+
T Consensus 238 i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~A 280 (633)
T TIGR02442 238 IARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAA 280 (633)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 124678888888887754 2 2477777776644
No 189
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.33 E-value=4e-11 Score=109.13 Aligned_cols=108 Identities=20% Similarity=0.329 Sum_probs=78.2
Q ss_pred CceEEEEeCCCcCC------------HHHHHHHHHHHhhcc--------CceeEEEEec------CCCcccHHHhhhcc-
Q 018543 130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYS--------ASCRLILCCN------SSSKVTEAIRSRCL- 182 (354)
Q Consensus 130 ~~~viiiDE~d~l~------------~~~~~~Ll~~le~~~--------~~~~~Il~~~------~~~~l~~~l~sR~~- 182 (354)
+..||+|||+|.+. ...|++||+++|... .+..+.|+|. .++.++|.+.-|+-
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 56799999999884 347999999998632 2223444433 35579999999985
Q ss_pred eeeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh
Q 018543 183 NIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCRV 237 (354)
Q Consensus 183 ~i~~~~~~~~~~~~~L~~----~-------~~~~~~--~i~~~~l~~i~~~s--------~gd~R~ai~~L~~~~~ 237 (354)
++.+.+++.+++.++|.. . ...+|+ .+++++++.||+.+ +-.+|..-..++.+..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 689999999999999933 2 223565 57799999999864 3457777777776543
No 190
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.32 E-value=6.9e-12 Score=103.70 Aligned_cols=46 Identities=26% Similarity=0.513 Sum_probs=37.5
Q ss_pred CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
|+|++||+.+++.+.-+...+ .|+|++||||+|||++|+.+.. ++.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~-lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPS-LLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHH-CS-
T ss_pred hhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHH-hCC
Confidence 789999999999998877653 4699999999999999999997 443
No 191
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.32 E-value=2.4e-11 Score=107.76 Aligned_cols=185 Identities=16% Similarity=0.196 Sum_probs=108.3
Q ss_pred cCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccc
Q 018543 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (354)
Q Consensus 7 yrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
|.|..=.+.+-+++....+..++..++ |++|.||||||||++++.+|..+..+- +.+.+.... ..
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l~~~~---~rV~~~~~l----------~~ 103 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARLNWPC---VRVNLDSHV----------SR 103 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHHCCCe---EEEEecCCC----------Ch
Confidence 445444556667777777777776554 599999999999999999999873221 111110000 00
Q ss_pred cccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh----------
Q 018543 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK---------- 156 (354)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~---------- 156 (354)
..+.....+.+ .+ +.. ..+ + ...++.. ......++++||+|..+++.++.|..+||.
T Consensus 104 ~DliG~~~~~l--~~-g~~----~~~----f-~~GpL~~-A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~ 170 (327)
T TIGR01650 104 IDLVGKDAIVL--KD-GKQ----ITE----F-RDGILPW-ALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQN 170 (327)
T ss_pred hhcCCCceeec--cC-Ccc----eeE----E-ecCcchh-HHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCc
Confidence 00000000000 00 000 000 0 0000000 012336799999999999999999999973
Q ss_pred ----ccCceeEEEEecCCC------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 018543 157 ----YSASCRLILCCNSSS------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQ--LPSGFATRL 217 (354)
Q Consensus 157 ----~~~~~~~Il~~~~~~------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~--i~~~~l~~i 217 (354)
+.+..++|.++|... .+.++..+|+. ++.+..|+.++-.++|..... ++. .+++.++.+
T Consensus 171 ~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~--~~~~~~~~~i~~~m 248 (327)
T TIGR01650 171 RVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK--GFDDTEGKDIINAM 248 (327)
T ss_pred eEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc--CCCccchHHHHHHH
Confidence 123456677777532 47899999996 468999999999999986542 221 124455555
Q ss_pred HHHc
Q 018543 218 AEKS 221 (354)
Q Consensus 218 ~~~s 221 (354)
++..
T Consensus 249 V~la 252 (327)
T TIGR01650 249 VRVA 252 (327)
T ss_pred HHHH
Confidence 5543
No 192
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.32 E-value=6e-11 Score=107.96 Aligned_cols=109 Identities=18% Similarity=0.306 Sum_probs=78.3
Q ss_pred CCceEEEEeCCCcCC------------HHHHHHHHHHHhhcc--------CceeEEEEec------CCCcccHHHhhhcc
Q 018543 129 RGFKVLVLNEVDKLS------------REAQHSLRRTMEKYS--------ASCRLILCCN------SSSKVTEAIRSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~d~l~------------~~~~~~Ll~~le~~~--------~~~~~Il~~~------~~~~l~~~l~sR~~ 182 (354)
.+..||+|||+|.+. ...|++||+++|... .+..+.|+|. .++.++|.+.-|+-
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 356899999999884 237999999998632 1222333332 35679999999985
Q ss_pred -eeeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh
Q 018543 183 -NIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCRV 237 (354)
Q Consensus 183 -~i~~~~~~~~~~~~~L~~----~-------~~~~~~--~i~~~~l~~i~~~s--------~gd~R~ai~~L~~~~~ 237 (354)
++.+.+++.+++.++|.. . ...+|+ .++++++..||+.+ +-.+|..-..++....
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~ 402 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLE 402 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 689999999999999932 1 233565 56799999999865 4457777777776543
No 193
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.31 E-value=8.6e-11 Score=108.20 Aligned_cols=166 Identities=19% Similarity=0.283 Sum_probs=100.0
Q ss_pred CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc
Q 018543 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS 91 (354)
Q Consensus 12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
++++++.++..+.+...+..+ ++++|+||||+|||++|+.+|..+.+... ...++...+. ++ + +-
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~-~~~v~~VtFH---ps------y---SY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKA-PQRVNMVQFH---QS------Y---SY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcc-cceeeEEeec---cc------c---cH
Confidence 567777788888787777654 45999999999999999999987643211 1011100000 00 0 00
Q ss_pred Ccee-eeCCCCCCCcc-hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-HHHHHHHHHhh------------
Q 018543 92 ANHV-ELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-AQHSLRRTMEK------------ 156 (354)
Q Consensus 92 ~~~i-~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-~~~~Ll~~le~------------ 156 (354)
.+.+ .+.+...+... ...+.++++.....+ .++.++||||+++.+.+ ....++..||.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p-------~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~ 311 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQP-------EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLT 311 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcc-------cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeee
Confidence 0111 12222222111 012334444333221 24589999999998855 35666666652
Q ss_pred ----------ccCceeEEEEecCCC----cccHHHhhhcceeeecC-CCHHHHHHHHH
Q 018543 157 ----------YSASCRLILCCNSSS----KVTEAIRSRCLNIRINS-PTEEQIVKVLE 199 (354)
Q Consensus 157 ----------~~~~~~~Il~~~~~~----~l~~~l~sR~~~i~~~~-~~~~~~~~~L~ 199 (354)
.|.+..+|.+.|..+ .+..++++|+..+++.| ++...+.+++.
T Consensus 312 y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 312 YSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred ccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence 135677888888876 58899999999999987 45556666654
No 194
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7e-11 Score=102.11 Aligned_cols=140 Identities=17% Similarity=0.323 Sum_probs=89.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC-C---CcchhHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-G---FQDRYVVQE 112 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~---~~~~~~i~~ 112 (354)
+|++||||||||++.+++|..+--. ..++. .....++++.... . ...+..+..
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR------~~~~y-----------------~~~~liEinshsLFSKWFsESgKlV~k 236 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIR------TNDRY-----------------YKGQLIEINSHSLFSKWFSESGKLVAK 236 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheee------ecCcc-----------------ccceEEEEehhHHHHHHHhhhhhHHHH
Confidence 8999999999999999999987211 11110 0122344443211 0 001123455
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHhhccC--ceeEEEEecCCCcccH
Q 018543 113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------------EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTE 175 (354)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---------------~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~ 175 (354)
+++.+.+.... .+..-.++|||++.+.. .+.|+|+..|+.... ++.+..++|-.+.+..
T Consensus 237 mF~kI~ELv~d----~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~ 312 (423)
T KOG0744|consen 237 MFQKIQELVED----RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDV 312 (423)
T ss_pred HHHHHHHHHhC----CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHH
Confidence 55555444332 34456889999998732 257889888876543 3333334444568999
Q ss_pred HHhhhcc-eeeecCCCHHHHHHHHHHHHH
Q 018543 176 AIRSRCL-NIRINSPTEEQIVKVLEFIAK 203 (354)
Q Consensus 176 ~l~sR~~-~i~~~~~~~~~~~~~L~~~~~ 203 (354)
++.+|.. +..+.+|+...+.++++.-..
T Consensus 313 AfVDRADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 313 AFVDRADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HhhhHhhheeecCCccHHHHHHHHHHHHH
Confidence 9999997 477799999999999987654
No 195
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.30 E-value=1.6e-10 Score=114.51 Aligned_cols=198 Identities=16% Similarity=0.155 Sum_probs=122.5
Q ss_pred CCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
.+|++++|.....+.+...++. ....+++|+|++||||+++|+++.+.........+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~------------- 388 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP------------- 388 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC-------------
Confidence 3799999987666555544432 2223499999999999999999977542222223333332111
Q ss_pred ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCC---CCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc------
Q 018543 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP---IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ 158 (354)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------ 158 (354)
....-.+++........ ...-...+...++|||++.|+...|..|++++++..
T Consensus 389 ------------------~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~ 450 (638)
T PRK11388 389 ------------------DEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDS 450 (638)
T ss_pred ------------------hHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCC
Confidence 00000111110000000 000011334689999999999999999999997632
Q ss_pred -----CceeEEEEecCCC-------cccHHHhhhc--ceeeecCCCH--HHHHHHHHHHHHH----c--CCCCCHHHHHH
Q 018543 159 -----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAKK----E--GLQLPSGFATR 216 (354)
Q Consensus 159 -----~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~~~--~~~~~~L~~~~~~----~--~~~i~~~~l~~ 216 (354)
.++++|++|+... .+.+.+..|. ..|.+||+.. +++...+...+.+ . .+.+++++++.
T Consensus 451 ~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 451 RRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred CceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 1456777776542 3445555554 3577888764 3555555554432 2 24689999999
Q ss_pred HHHHc-CCCHHHHHHHHHHHHhc
Q 018543 217 LAEKS-NRSLRRAILSFETCRVQ 238 (354)
Q Consensus 217 i~~~s-~gd~R~ai~~L~~~~~~ 238 (354)
+.++. .||+|+..+.++.++..
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHh
Confidence 99987 99999999999987754
No 196
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.29 E-value=4.7e-10 Score=93.27 Aligned_cols=191 Identities=18% Similarity=0.252 Sum_probs=127.7
Q ss_pred cccCCCCCCCcccCHHHHHHHH----HHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLK----KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~----~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
..+.|..+.+++|-+..++.|- +.++.-...|+||+|..|+|||++++++.+++...+..
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr---------------- 115 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR---------------- 115 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe----------------
Confidence 4566678889999766655443 34433334459999999999999999999887544432
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-CHHHHHHHHHHH----h
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-SREAQHSLRRTM----E 155 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-~~~~~~~Ll~~l----e 155 (354)
.+++..++.. .+-.+++.+... ..+-|||+|+...= ..++..+|...| |
T Consensus 116 -------------LVEV~k~dl~-----~Lp~l~~~Lr~~--------~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve 169 (287)
T COG2607 116 -------------LVEVDKEDLA-----TLPDLVELLRAR--------PEKFILFCDDLSFEEGDDAYKALKSALEGGVE 169 (287)
T ss_pred -------------EEEEcHHHHh-----hHHHHHHHHhcC--------CceEEEEecCCCCCCCchHHHHHHHHhcCCcc
Confidence 2444433322 233444443332 34568888986432 344566677777 4
Q ss_pred hccCceeEEEEecCCCcccHH----------------------Hhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543 156 KYSASCRLILCCNSSSKVTEA----------------------IRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (354)
Q Consensus 156 ~~~~~~~~Il~~~~~~~l~~~----------------------l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~ 212 (354)
..|.++.|..++|..+-+.+. +-+|+ ..+.|.|++.++-.+++...++..++.++++
T Consensus 170 ~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e 249 (287)
T COG2607 170 GRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDE 249 (287)
T ss_pred cCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 567788777777766533322 23454 4689999999999999999999999999765
Q ss_pred H-----HHHHHHHcCCCHHHHHHHHHHHHh
Q 018543 213 F-----ATRLAEKSNRSLRRAILSFETCRV 237 (354)
Q Consensus 213 ~-----l~~i~~~s~gd~R~ai~~L~~~~~ 237 (354)
. ++....+.+.+-|.|....+.++-
T Consensus 250 ~l~~eAl~WAt~rg~RSGR~A~QF~~~~~g 279 (287)
T COG2607 250 ELHAEALQWATTRGGRSGRVAWQFIRDLAG 279 (287)
T ss_pred HHHHHHHHHHHhcCCCccHhHHHHHHHHHh
Confidence 4 444445667788888888776653
No 197
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.29 E-value=1.9e-10 Score=110.75 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=122.3
Q ss_pred CCCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
..+|++++|.....+.+...++. ....+++|+|++||||+++|+++-..-.......+.++|..+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~------------ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP------------ 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC------------
Confidence 45899999987655555444432 2223499999999999999999755322122222333332111
Q ss_pred cccccCceee--eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc------
Q 018543 87 TTLSSANHVE--LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ 158 (354)
Q Consensus 87 ~~~~~~~~i~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------ 158 (354)
. ..++ +.....+..... . ..... .-...+...++|||++.|+...|..|++.+++..
T Consensus 268 ----~-~~~e~elFG~~~~~~~~~-~-------~~~~g--~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 268 ----D-DVVESELFGHAPGAYPNA-L-------EGKKG--FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred ----H-HHHHHHhcCCCCCCcCCc-c-------cCCCC--hhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCC
Confidence 0 0000 000000000000 0 00000 0001234689999999999999999999997631
Q ss_pred -----CceeEEEEecCCC-------cccHHHhhhc--ceeeecCCCH--HHHHHH----HHHHHHHcCC---CCCHHHHH
Q 018543 159 -----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKV----LEFIAKKEGL---QLPSGFAT 215 (354)
Q Consensus 159 -----~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~~~--~~~~~~----L~~~~~~~~~---~i~~~~l~ 215 (354)
.++++|++|+... .+.+.+..|. ..|++||+.+ +++... +.+.+.+.|. .+++++++
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~ 412 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNT 412 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 2457777776542 3556788885 4688888864 345443 3444444443 68999999
Q ss_pred HHHHH-cCCCHHHHHHHHHHHHhc
Q 018543 216 RLAEK-SNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 216 ~i~~~-s~gd~R~ai~~L~~~~~~ 238 (354)
.+..+ ..||+|+..+.++.++..
T Consensus 413 ~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 413 VLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHh
Confidence 99997 899999999999987754
No 198
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.29 E-value=3.6e-10 Score=102.44 Aligned_cols=196 Identities=15% Similarity=0.137 Sum_probs=121.6
Q ss_pred CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
.+++++|.....+.+.+.++. ....+++|+|++||||+++|+++-..-...+...+.++|....
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~-------------- 69 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-------------- 69 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC--------------
Confidence 567899987666655555543 2223499999999999999999875321122222333332111
Q ss_pred cccCceeeeCCCCCCCcchhHHH-HHHHHHH----h--cCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQ-EVIKEMA----K--NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~-~~~~~~~----~--~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~--- 158 (354)
+ ..+. +++.... . ......-...+...++|||++.|+...|..|++.+++..
T Consensus 70 -----------------~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~ 131 (326)
T PRK11608 70 -----------------E-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELER 131 (326)
T ss_pred -----------------H-HHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEe
Confidence 0 0000 0000000 0 000000012334689999999999999999999997532
Q ss_pred --------CceeEEEEecCC-------CcccHHHhhhcc--eeeecCCCH--HHHHHHHHHH----HHHcC----CCCCH
Q 018543 159 --------ASCRLILCCNSS-------SKVTEAIRSRCL--NIRINSPTE--EQIVKVLEFI----AKKEG----LQLPS 211 (354)
Q Consensus 159 --------~~~~~Il~~~~~-------~~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~~----~~~~~----~~i~~ 211 (354)
.++++|++++.. ..+.+.+..|+. .|.+||+.. +++..++.+. +.+.+ ..+++
T Consensus 132 ~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~ 211 (326)
T PRK11608 132 VGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTE 211 (326)
T ss_pred CCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 246777777654 246677888863 688888853 4555555443 33333 25789
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHhc
Q 018543 212 GFATRLAEK-SNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 212 ~~l~~i~~~-s~gd~R~ai~~L~~~~~~ 238 (354)
++++.+..+ ..||+|+..+.++.++..
T Consensus 212 ~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 212 RARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 999999885 589999999999987754
No 199
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.9e-10 Score=108.74 Aligned_cols=191 Identities=14% Similarity=0.208 Sum_probs=122.8
Q ss_pred CCCCCcccCHHHHHHHHHHHhc----------C--CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE----------Q--DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~----------~--~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
..++|+-|-.++++.+...+.. - +.+. +|||||||||||.+|-++|....
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~----------------- 726 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN----------------- 726 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-----------------
Confidence 3688999988998888887753 1 2222 99999999999999999987430
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-----------HH
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE 145 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~~ 145 (354)
+.+-.+.+++.+. .-.| .....+|+++..... .++.|+|+||+|.+. ..
T Consensus 727 -------~~fisvKGPElL~---KyIG-aSEq~vR~lF~rA~~---------a~PCiLFFDEfdSiAPkRGhDsTGVTDR 786 (952)
T KOG0735|consen 727 -------LRFISVKGPELLS---KYIG-ASEQNVRDLFERAQS---------AKPCILFFDEFDSIAPKRGHDSTGVTDR 786 (952)
T ss_pred -------eeEEEecCHHHHH---HHhc-ccHHHHHHHHHHhhc---------cCCeEEEeccccccCcccCCCCCCchHH
Confidence 0111111111110 0011 112357777765444 345899999999884 34
Q ss_pred HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 018543 146 AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK 220 (354)
Q Consensus 146 ~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~ 220 (354)
..|.|+.-|+.- -.++.++.+|+.++-+.|++.+-.. .+..+.|+..+..++|+......... ++-.++.++..
T Consensus 787 VVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~ 865 (952)
T KOG0735|consen 787 VVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQK 865 (952)
T ss_pred HHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhh
Confidence 678888888432 3445566667778888899887542 57888999999999998776543322 23457778876
Q ss_pred cCC----CHHHHHHHHHHHHhc
Q 018543 221 SNR----SLRRAILSFETCRVQ 238 (354)
Q Consensus 221 s~g----d~R~ai~~L~~~~~~ 238 (354)
+.| |+...+-..+.++.+
T Consensus 866 T~g~tgADlq~ll~~A~l~avh 887 (952)
T KOG0735|consen 866 TDGFTGADLQSLLYNAQLAAVH 887 (952)
T ss_pred cCCCchhhHHHHHHHHHHHHHH
Confidence 655 555555444544433
No 200
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.29 E-value=9.6e-10 Score=104.22 Aligned_cols=185 Identities=16% Similarity=0.182 Sum_probs=113.8
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhc-------CCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVF-------GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY 108 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (354)
-++++|-||+|||.+++.+.+.|. .+....+.+++..+. .+.... ..+.-..+........
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~--~~~~~Y----------~~I~~~lsg~~~~~~~ 491 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA--SPREIY----------EKIWEALSGERVTWDA 491 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec--CHHHHH----------HHHHHhcccCcccHHH
Confidence 499999999999999999999876 222223333332221 000000 0000000000000001
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---CceeEEEEecCCC---c-ccHHHhhhc
Q 018543 109 VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---ASCRLILCCNSSS---K-VTEAIRSRC 181 (354)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---~~~~~Il~~~~~~---~-l~~~l~sR~ 181 (354)
.+..+-..+.. -.......||+|||.|.|-...|+.|..+++-+. ....+|.++|+.+ + +...+.||.
T Consensus 492 al~~L~~~f~~-----~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRl 566 (767)
T KOG1514|consen 492 ALEALNFRFTV-----PKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRL 566 (767)
T ss_pred HHHHHHHhhcc-----CCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhc
Confidence 11111111221 1134567899999999998888898888887653 3455666667654 2 444667775
Q ss_pred --ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHhc
Q 018543 182 --LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE---KSNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 182 --~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~---~s~gd~R~ai~~L~~~~~~ 238 (354)
..+.|.|++.+++..++..++... ..++.++++.+++ ...||.|+|+..+..++--
T Consensus 567 g~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Ei 627 (767)
T KOG1514|consen 567 GLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEI 627 (767)
T ss_pred cceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 579999999999999998876533 2456777777765 4579999999999977643
No 201
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.6e-11 Score=103.33 Aligned_cols=177 Identities=18% Similarity=0.250 Sum_probs=110.0
Q ss_pred CCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
.+|+.+-|-......|+..+.- | .+|. ++||||||+|||.++++++..+-+. .+.+..
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n---fl~v~s------ 199 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVN---FLKVVS------ 199 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCc---eEEeeH------
Confidence 3788888888878888776631 2 3343 9999999999999999999876221 111100
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-----------CHH
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----------SRE 145 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-----------~~~ 145 (354)
...+ +.+-......+|+......... +.|+++||+|.. +.+
T Consensus 200 ---------------s~lv----~kyiGEsaRlIRemf~yA~~~~---------pciifmdeiDAigGRr~se~Ts~dre 251 (388)
T KOG0651|consen 200 ---------------SALV----DKYIGESARLIRDMFRYAREVI---------PCIIFMDEIDAIGGRRFSEGTSSDRE 251 (388)
T ss_pred ---------------hhhh----hhhcccHHHHHHHHHHHHhhhC---------ceEEeehhhhhhccEEeccccchhHH
Confidence 0000 0111112234677666655433 389999999875 234
Q ss_pred HHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhhhc--c-eeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHH
Q 018543 146 AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC--L-NIRINSPTEEQIVKVLEFIAKKEG--LQLPSGFAT 215 (354)
Q Consensus 146 ~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~sR~--~-~i~~~~~~~~~~~~~L~~~~~~~~--~~i~~~~l~ 215 (354)
.|..|..++.+. -..+++|+++|+++.+.|++.+-. . .+..|.|.......+++-+.+.-. -.++.+++-
T Consensus 252 iqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaiv 331 (388)
T KOG0651|consen 252 IQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAIL 331 (388)
T ss_pred HHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHH
Confidence 566676666442 356899999999999999998743 2 456665655555555443332211 146666666
Q ss_pred HHHHHcCC
Q 018543 216 RLAEKSNR 223 (354)
Q Consensus 216 ~i~~~s~g 223 (354)
.+++..+|
T Consensus 332 K~~d~f~g 339 (388)
T KOG0651|consen 332 KLVDGFNG 339 (388)
T ss_pred HHHhccCh
Confidence 66666655
No 202
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=6.7e-12 Score=102.82 Aligned_cols=159 Identities=16% Similarity=0.274 Sum_probs=100.7
Q ss_pred CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc
Q 018543 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS 91 (354)
Q Consensus 12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
+..-+|..++.+.+.-.++.|.. +.++||+|+||||+.|++.. |-.++.+.+.+++....... ++..+
T Consensus 8 l~K~fg~~~VLkgi~l~v~~Gev--v~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~g~~~~~~~-------~~~~~-- 75 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKGEV--VVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKK-------DILKL-- 75 (240)
T ss_pred eeEEeCCeEEecCcceeEcCCCE--EEEECCCCCCHHHHHHHHHC-CcCCCCceEEECCEeccchh-------hHHHH--
Confidence 33445666667777777777766 99999999999999999986 77888898888885332000 00000
Q ss_pred CceeeeCCCCCCCcc-------------------hh----HHHHHHHHH-----HhcCCCCCCCC------------CCc
Q 018543 92 ANHVELSPSDAGFQD-------------------RY----VVQEVIKEM-----AKNRPIDTKGK------------RGF 131 (354)
Q Consensus 92 ~~~i~~~~~~~~~~~-------------------~~----~i~~~~~~~-----~~~~~~~~~~~------------~~~ 131 (354)
...+.+..+.+...+ +. ...++++.+ +...|..+|+. -++
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 000111111111111 11 112222211 22333334432 368
Q ss_pred eEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543 132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 132 ~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
+++++||+ ..|+|+.....+.+|.+....+...++.+|.-.+...+.+|..
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrvi 207 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI 207 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEE
Confidence 99999998 7899999999999998887777777777788888888888863
No 203
>PHA02244 ATPase-like protein
Probab=99.27 E-value=3e-10 Score=101.94 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
..+..+++.+. +++|+||+|||||++|++++..+..+ .+.+++. . + ......+.....
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg~p---fv~In~l--~----------d-----~~~L~G~i~~~g 167 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALDLD---FYFMNAI--M----------D-----EFELKGFIDANG 167 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhCCC---EEEEecC--h----------H-----HHhhcccccccc
Confidence 45556666554 39999999999999999999875221 1111100 0 0 000000000000
Q ss_pred CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh-----------ccCceeEEEEecCC-
Q 018543 103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK-----------YSASCRLILCCNSS- 170 (354)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~-----------~~~~~~~Il~~~~~- 170 (354)
...+ ..++..+ .+..+++|||++.++++.+..|...+++ .+.++++|+++|..
T Consensus 168 ~~~d----gpLl~A~-----------~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~ 232 (383)
T PHA02244 168 KFHE----TPFYEAF-----------KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLG 232 (383)
T ss_pred cccc----hHHHHHh-----------hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCc
Confidence 0000 0111111 2337999999999999999999999963 23578899998873
Q ss_pred ----------CcccHHHhhhcceeeecCCCH
Q 018543 171 ----------SKVTEAIRSRCLNIRINSPTE 191 (354)
Q Consensus 171 ----------~~l~~~l~sR~~~i~~~~~~~ 191 (354)
..+.+++++|+..++|..|+.
T Consensus 233 ~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 233 KGADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred cCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 368899999999999988874
No 204
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.26 E-value=2.6e-10 Score=108.93 Aligned_cols=203 Identities=16% Similarity=0.140 Sum_probs=123.3
Q ss_pred CCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
.+|++++|+....+.+...++. ....+++|+|++||||+++|+.+-..-...+...+.++|..+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~------------- 275 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA------------- 275 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC-------------
Confidence 4689999998877777776653 3334599999999999999999976432222222333332111
Q ss_pred ccccCcee--eeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-------
Q 018543 88 TLSSANHV--ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------- 158 (354)
Q Consensus 88 ~~~~~~~i--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------- 158 (354)
. ..+ ++.....+.... ........+........++|||++.|+...|..|++.+++..
T Consensus 276 ---e-~lleseLFG~~~gaftg---------a~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 276 ---E-SLLEAELFGYEEGAFTG---------ARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred ---h-hHHHHHhcCCccccccc---------ccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCC
Confidence 0 000 000000000000 000000000011334689999999999999999999997632
Q ss_pred ----CceeEEEEecCCC-------cccHHHhhhc--ceeeecCCCH--HHHHHHHHHHH----HHcCCCCCHHHHHH---
Q 018543 159 ----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIA----KKEGLQLPSGFATR--- 216 (354)
Q Consensus 159 ----~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~~~--~~~~~~L~~~~----~~~~~~i~~~~l~~--- 216 (354)
.++++|++|+... .+.+.+-.|. ..|++||+.+ +++..+..+.+ ...++.++++++..
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG 422 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence 2347888777653 3444555564 4688888854 45555544443 34466788998877
Q ss_pred ----HHH-HcCCCHHHHHHHHHHHHhc
Q 018543 217 ----LAE-KSNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 217 ----i~~-~s~gd~R~ai~~L~~~~~~ 238 (354)
+.. ...||+|+..+.++.++..
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 655 4589999999999988764
No 205
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.25 E-value=5.4e-10 Score=107.51 Aligned_cols=202 Identities=16% Similarity=0.148 Sum_probs=124.6
Q ss_pred CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
.+.+++|+....+.+...++. ....+++|+|++||||+++|+++...-...+...+.++|..+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~-------------- 250 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP-------------- 250 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC--------------
Confidence 568899998777766666654 2223499999999999999999987432222222333332111
Q ss_pred cccCceee--eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc--------
Q 018543 89 LSSANHVE--LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------- 158 (354)
Q Consensus 89 ~~~~~~i~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------- 158 (354)
. ..++ +.....+.... +...........+...++|||++.|+.+.|..|++.+++..
T Consensus 251 --~-~~~e~~lfG~~~g~~~g----------a~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 251 --E-SLAESELFGHVKGAFTG----------AISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred --h-HHHHHHhcCccccccCC----------CcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCc
Confidence 0 0000 00000000000 00000000012234679999999999999999999997532
Q ss_pred ---CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCCH--HHHHHHHHHH----HHHcC---CCCCHHHHHHH
Q 018543 159 ---ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFI----AKKEG---LQLPSGFATRL 217 (354)
Q Consensus 159 ---~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~~----~~~~~---~~i~~~~l~~i 217 (354)
.++++|++|+... .+.+.+..|.. .|++||+.. +++..+..+. +.+.| +.+++++++.+
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2568888887653 46666777754 577888753 4555444433 33333 56899999999
Q ss_pred HHH-cCCCHHHHHHHHHHHHhcC
Q 018543 218 AEK-SNRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 218 ~~~-s~gd~R~ai~~L~~~~~~~ 239 (354)
.++ ..||+|+..+.++.++...
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhc
Confidence 886 5899999999999887653
No 206
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.24 E-value=5.6e-10 Score=106.62 Aligned_cols=205 Identities=15% Similarity=0.178 Sum_probs=120.5
Q ss_pred CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
+|++++|+....+.+...++. ....+++|+|++||||+++|+++-..+....... + .
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~-------------S--------~ 275 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDAR-------------Q--------G 275 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhccccccc-------------C--------c
Confidence 688999998887777777653 3334599999999999999999977521100000 0 0
Q ss_pred cccCceeeeCCCCCCCcchhHHHHHHHH----HHhc---CCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQEVIKE----MAKN---RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~----~~~~---~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~--- 158 (354)
.....++.+++.... +...-.+++.. +... ....+-.......++|||++.|+...|..|++.+++..
T Consensus 276 r~~~pfv~inCaal~--e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 276 KKSHPFVAVNCGAIA--ESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred cCCCCeEEeecccCC--hhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 000111222222111 00000011000 0000 00000012334689999999999999999999997632
Q ss_pred --------CceeEEEEecCCC-------cccHHHhhhc--ceeeecCCCH--HHHHHHHHHHHH----HcCCCCCHHHHH
Q 018543 159 --------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----KEGLQLPSGFAT 215 (354)
Q Consensus 159 --------~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~~~--~~~~~~L~~~~~----~~~~~i~~~~l~ 215 (354)
.++++|++|+... .+.+.+-.|. ..|++||+.+ +++..+....+. +.+..++++++.
T Consensus 354 ~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 433 (538)
T PRK15424 354 VGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQ 433 (538)
T ss_pred cCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 2357888777653 2444566665 4677788754 566555555444 356678887763
Q ss_pred -------HHHH-HcCCCHHHHHHHHHHHHhc
Q 018543 216 -------RLAE-KSNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 216 -------~i~~-~s~gd~R~ai~~L~~~~~~ 238 (354)
.+.. ...||+|+..|.++.++..
T Consensus 434 ~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 434 GLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 3333 2689999999999988764
No 207
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.8e-10 Score=112.22 Aligned_cols=190 Identities=20% Similarity=0.260 Sum_probs=127.7
Q ss_pred CCCCCcccCHHHHHHHHHHHhc------------CCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE------------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~------------~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
.+|+++-|-+.++..|+.++-. -..|. +||+||||+|||..|+++|..+-. +...+.+..+
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~-~~~kisffmr----- 335 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSR-GNRKISFFMR----- 335 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcc-cccccchhhh-----
Confidence 4689999999999999987742 12344 999999999999999999986421 1111111100
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------H
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E 145 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~ 145 (354)
.+.+.+.. ..| ......+.++.+... ..+.||++||+|+|.+ .
T Consensus 336 -------------kgaD~lsk---wvg-EaERqlrllFeeA~k---------~qPSIIffdeIdGlapvrSskqEqih~S 389 (1080)
T KOG0732|consen 336 -------------KGADCLSK---WVG-EAERQLRLLFEEAQK---------TQPSIIFFDEIDGLAPVRSSKQEQIHAS 389 (1080)
T ss_pred -------------cCchhhcc---ccC-cHHHHHHHHHHHHhc---------cCceEEeccccccccccccchHHHhhhh
Confidence 00000000 001 111234555544433 3457999999998843 2
Q ss_pred HHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 018543 146 AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK 220 (354)
Q Consensus 146 ~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~ 220 (354)
....|+.+|...+. .+.+|.+||.++.+.+++|++.. .++|+-|+.+...+++.-+-.+..-.++...+..+++.
T Consensus 390 IvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~ 469 (1080)
T KOG0732|consen 390 IVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEE 469 (1080)
T ss_pred HHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Confidence 34467777765543 45566678899999999998763 69999999999999998766665667889999999999
Q ss_pred cCCCHHHHHHH
Q 018543 221 SNRSLRRAILS 231 (354)
Q Consensus 221 s~gd~R~ai~~ 231 (354)
+.|-.+.-+..
T Consensus 470 t~gy~gaDlka 480 (1080)
T KOG0732|consen 470 TSGYGGADLKA 480 (1080)
T ss_pred ccccchHHHHH
Confidence 88876655443
No 208
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.22 E-value=3.6e-10 Score=102.74 Aligned_cols=199 Identities=19% Similarity=0.192 Sum_probs=122.3
Q ss_pred CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcC-CCCcccccccccccccCCCcccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
.+++++|.....+.+...++. ....++|++|++|+||+.+|+.+...-.. .+...+.++|..+.
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~------------- 142 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS------------- 142 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC-------------
Confidence 578899976655555555543 11124999999999999999999742212 12333444443332
Q ss_pred ccccCceeeeCCCCCCCcchhHHHHHHHH-----HH-hcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh-----
Q 018543 88 TLSSANHVELSPSDAGFQDRYVVQEVIKE-----MA-KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK----- 156 (354)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~-----~~-~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~----- 156 (354)
... ..-+++.. .. .......-...+...+++||++.|++..|..|+++|++
T Consensus 143 ----------------en~--~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~r 204 (403)
T COG1221 143 ----------------ENL--QEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRR 204 (403)
T ss_pred ----------------cCH--HHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEe
Confidence 110 00001100 00 00000001123457899999999999999999999987
Q ss_pred ------ccCceeEEEEecCCC--cccH--HHhhhcc--eeeecCCCH--HHHHHHH----HHHHHHcCCCC---CHHHHH
Q 018543 157 ------YSASCRLILCCNSSS--KVTE--AIRSRCL--NIRINSPTE--EQIVKVL----EFIAKKEGLQL---PSGFAT 215 (354)
Q Consensus 157 ------~~~~~~~Il~~~~~~--~l~~--~l~sR~~--~i~~~~~~~--~~~~~~L----~~~~~~~~~~i---~~~~l~ 215 (354)
.+.++++|++|+..- .+.. ++..|+. .|++||+.. +|+...+ ...+.+.+..+ +++++.
T Consensus 205 vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 205 VGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred cCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 345677888777653 5666 7777664 577777753 3333333 34445555543 356777
Q ss_pred HHHHH-cCCCHHHHHHHHHHHHhcCC
Q 018543 216 RLAEK-SNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 216 ~i~~~-s~gd~R~ai~~L~~~~~~~~ 240 (354)
.+..+ ..||+|...|.++.+++...
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 77664 68999999999998887754
No 209
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.22 E-value=1.6e-11 Score=100.41 Aligned_cols=105 Identities=25% Similarity=0.403 Sum_probs=66.4
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHhc-CCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHH
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV 113 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~ 113 (354)
.+++|.||+|+|||.+++++|+.+. +.....+.++...+. ..+ +. . ..+...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~----------------~~~-------~~--~--~~~~~l 56 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS----------------EGD-------DV--E--SSVSKL 56 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC----------------SHH-------HC--S--CHCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc----------------ccc-------hH--H--hhhhhh
Confidence 3599999999999999999999887 555555555554443 000 00 0 001111
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHhhc-----------cCceeEEEEecCCC
Q 018543 114 IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------EAQHSLRRTMEKY-----------SASCRLILCCNSSS 171 (354)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~~~~~Ll~~le~~-----------~~~~~~Il~~~~~~ 171 (354)
+. ..+.. ....+..||++||+|..++ ..|+.|+++||+. ..++.||+++|-..
T Consensus 57 ~~----~~~~~-v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 57 LG----SPPGY-VGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HH----HTTCH-HHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hh----cccce-eeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 11 01000 0011224999999999999 9999999999863 14577888777654
No 210
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.21 E-value=3.2e-10 Score=103.29 Aligned_cols=152 Identities=24% Similarity=0.347 Sum_probs=90.5
Q ss_pred cccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCce
Q 018543 15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94 (354)
Q Consensus 15 ~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
++|+++++..+..++..|. |++|.||||+|||++++.+|+.+..+ ...+.+.
T Consensus 26 ~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~~~---~~~i~~t----------------------- 77 (329)
T COG0714 26 VVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALGLP---FVRIQCT----------------------- 77 (329)
T ss_pred eeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhCCC---eEEEecC-----------------------
Confidence 6788888877776776664 49999999999999999999976311 1111111
Q ss_pred eeeCCCCCCCcchhHHHHHHHHHH----hcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc------C-----
Q 018543 95 VELSPSDAGFQDRYVVQEVIKEMA----KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------A----- 159 (354)
Q Consensus 95 i~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------~----- 159 (354)
-.+.+++.-+.. .+........ ...++ ..... .++++||+++.++..+++|+..|++.. .
T Consensus 78 ~~l~p~d~~G~~--~~~~~~~~~~~~~~~~gpl--~~~~~-~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~ 152 (329)
T COG0714 78 PDLLPSDLLGTY--AYAALLLEPGEFRFVPGPL--FAAVR-VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLP 152 (329)
T ss_pred CCCCHHHhcCch--hHhhhhccCCeEEEecCCc--ccccc-eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCC
Confidence 011122211110 1111100000 00111 00111 599999999999999999999998721 1
Q ss_pred ceeEEEEe-c-----CCCcccHHHhhhc-ceeeecCCCHHHHHHHHH
Q 018543 160 SCRLILCC-N-----SSSKVTEAIRSRC-LNIRINSPTEEQIVKVLE 199 (354)
Q Consensus 160 ~~~~Il~~-~-----~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~ 199 (354)
...+++.| | ....+++++.+|| ..+.++.|..++...++.
T Consensus 153 ~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 153 PPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred CCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHH
Confidence 12234444 5 2346899999999 778888885554444443
No 211
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.21 E-value=6.1e-11 Score=96.00 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=111.1
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (354)
+++.+.-.++.|+. .-+.||+|+||||+.|.+|. ++-|+.+.+.+++.+.. ..|. .-..++.+...
T Consensus 17 AvrdVSF~ae~Gei--~GlLG~NGAGKTT~LRmiat-lL~P~~G~v~idg~d~~-~~p~----------~vrr~IGVl~~ 82 (245)
T COG4555 17 AVRDVSFEAEEGEI--TGLLGENGAGKTTLLRMIAT-LLIPDSGKVTIDGVDTV-RDPS----------FVRRKIGVLFG 82 (245)
T ss_pred hhhheeEEeccceE--EEEEcCCCCCchhHHHHHHH-hccCCCceEEEeecccc-cChH----------HHhhhcceecC
Confidence 34445555566765 78999999999999999998 77888888888875433 0110 11234666667
Q ss_pred CCCCcchhHHHHHHHHHHhcCCCC---------------------------CC------------CCCCceEEEEeCC-C
Q 018543 101 DAGFQDRYVVQEVIKEMAKNRPID---------------------------TK------------GKRGFKVLVLNEV-D 140 (354)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~~~~~~~---------------------------~~------------~~~~~~viiiDE~-d 140 (354)
+.+.+.+.+.++.++.++...... ++ ...+++++++||+ .
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s 162 (245)
T COG4555 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTS 162 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 778888888999998887665541 01 0157899999997 8
Q ss_pred cCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeee
Q 018543 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRI 186 (354)
Q Consensus 141 ~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~ 186 (354)
.++-.....+.+.+.......+.|+.++|.-.-.+++++|+.+++=
T Consensus 163 GLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~ 208 (245)
T COG4555 163 GLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHK 208 (245)
T ss_pred CccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEec
Confidence 8988888889998877766567777777777777889999876553
No 212
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.19 E-value=1.1e-09 Score=109.32 Aligned_cols=202 Identities=20% Similarity=0.223 Sum_probs=122.2
Q ss_pred CCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
.+|++++|+....+.+...++. ....+++|+|++|||||++|+++...-...+...+.++|....
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~------------- 439 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP------------- 439 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC-------------
Confidence 4688999987777666554442 2223499999999999999999977432223233333332111
Q ss_pred ccccCceee--eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-------
Q 018543 88 TLSSANHVE--LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------- 158 (354)
Q Consensus 88 ~~~~~~~i~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------- 158 (354)
. ..++ +.....+..... .......+. .....+++|||++.|+.+.|..|++.+++..
T Consensus 440 ---~-~~~~~~lfg~~~~~~~g~-~~~~~g~le---------~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 440 ---A-GLLESDLFGHERGAFTGA-SAQRIGRFE---------LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred ---h-hHhhhhhcCccccccccc-ccchhhHHH---------hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCC
Confidence 0 0000 000000000000 000011111 1223689999999999999999999997632
Q ss_pred ----CceeEEEEecCCC-------cccHHHhhhc--ceeeecCCCH--HHHHHHHHH----HHHHcCC---CCCHHHHHH
Q 018543 159 ----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEF----IAKKEGL---QLPSGFATR 216 (354)
Q Consensus 159 ----~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~~~--~~~~~~L~~----~~~~~~~---~i~~~~l~~ 216 (354)
.++++|++++..- .+.+.+..|. ..|.+||+.. +++...+.. .+.+.|. .+++++++.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~ 585 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRT 585 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 3467888877643 3444566664 3577888753 455444443 3333343 478999999
Q ss_pred HHHH-cCCCHHHHHHHHHHHHhc
Q 018543 217 LAEK-SNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 217 i~~~-s~gd~R~ai~~L~~~~~~ 238 (354)
+..+ ..||+|+..+.++.++..
T Consensus 586 L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 586 LSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHh
Confidence 9885 589999999999988764
No 213
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-09 Score=103.20 Aligned_cols=177 Identities=19% Similarity=0.253 Sum_probs=119.3
Q ss_pred CCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 13 DQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++.|.......++..+.. | +.|. +|+|||||+|||.+++++|++..+ ..+.+++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a---~~~~i~~--------- 251 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA---FLFLING--------- 251 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc---eeEeccc---------
Confidence 4556665555556655531 2 2233 999999999999999999997521 0111111
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----------HHHHH
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------EAQHS 149 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------~~~~~ 149 (354)
+..+.-. .......+|..+....... .+.+++|||+|.+.+ .....
T Consensus 252 ------------peli~k~----~gEte~~LR~~f~~a~k~~--------~psii~IdEld~l~p~r~~~~~~e~Rv~sq 307 (693)
T KOG0730|consen 252 ------------PELISKF----PGETESNLRKAFAEALKFQ--------VPSIIFIDELDALCPKREGADDVESRVVSQ 307 (693)
T ss_pred ------------HHHHHhc----ccchHHHHHHHHHHHhccC--------CCeeEeHHhHhhhCCcccccchHHHHHHHH
Confidence 1011111 1111234566665544332 158999999998864 34557
Q ss_pred HHHHHhhcc--CceeEEEEecCCCcccHHHhh-hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q 018543 150 LRRTMEKYS--ASCRLILCCNSSSKVTEAIRS-RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL 225 (354)
Q Consensus 150 Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s-R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~ 225 (354)
|+.+|+... .+..++.++|.+..+.+++++ |+. .+.+.-|+..+..++|+...++.+.. ++..+..++..+.|-.
T Consensus 308 lltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 308 LLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYV 386 (693)
T ss_pred HHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchh
Confidence 888887654 567777788999999999997 764 58899999999999999998887776 6778888888877755
Q ss_pred H
Q 018543 226 R 226 (354)
Q Consensus 226 R 226 (354)
.
T Consensus 387 G 387 (693)
T KOG0730|consen 387 G 387 (693)
T ss_pred H
Confidence 3
No 214
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.18 E-value=1.5e-09 Score=100.63 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=126.0
Q ss_pred CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
...+++|+....+.+.+.+.+ ....+++|+|++||||..+|+++-+.--..+...+.++|..+.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip-------------- 204 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP-------------- 204 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC--------------
Confidence 577899998888888877764 3333499999999999999999976322222222333322111
Q ss_pred cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCC-C--------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP-I--------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS- 158 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~-~--------~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~- 158 (354)
....=.++ |..... + ..-...+...+|+||+..|+.+.|..|++.+++..
T Consensus 205 -----------------~~l~ESEL---FGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~ 264 (464)
T COG2204 205 -----------------ENLLESEL---FGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREF 264 (464)
T ss_pred -----------------HHHHHHHh---hcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCee
Confidence 00000011 111110 0 00012345789999999999999999999997632
Q ss_pred ----------CceeEEEEecCCC-------cccHHHhhhcce--eeecCCC--HHHHH----HHHHHHHHHcCC---CCC
Q 018543 159 ----------ASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPT--EEQIV----KVLEFIAKKEGL---QLP 210 (354)
Q Consensus 159 ----------~~~~~Il~~~~~~-------~l~~~l~sR~~~--i~~~~~~--~~~~~----~~L~~~~~~~~~---~i~ 210 (354)
-++++|.+||..- ++-+.|--|..+ +++||+. .+++- .+|++.+.+.|. .++
T Consensus 265 ~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s 344 (464)
T COG2204 265 ERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFS 344 (464)
T ss_pred EecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 2466888777653 577788888765 5556653 23433 344445555544 688
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Q 018543 211 SGFATRLAEK-SNRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 211 ~~~l~~i~~~-s~gd~R~ai~~L~~~~~~~ 239 (354)
++++..+..+ ..||+|+..|.++.++...
T Consensus 345 ~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 345 PEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 9999998885 5899999999999887654
No 215
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.17 E-value=3.1e-11 Score=95.85 Aligned_cols=52 Identities=25% Similarity=0.350 Sum_probs=41.0
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhcc-------------C------ceeEEEEecCCC----cccHHHhhhc
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------A------SCRLILCCNSSS----KVTEAIRSRC 181 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------------~------~~~~Il~~~~~~----~l~~~l~sR~ 181 (354)
+..+++|||++..+++.++.|+.++++.. . +..+|+++|... .+.++++|||
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 56899999999999999999999996521 1 278888999887 8999999997
No 216
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.17 E-value=2.4e-11 Score=108.28 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeC
Q 018543 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (354)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (354)
..+++.+.-.++.|.+ +.|.||+|+||||+.+++++ +..+..+.+.+++....-+ .......+.+.
T Consensus 18 ~~~l~~vs~~i~~Gei--~gllG~NGAGKTTllk~l~g-l~~p~~G~i~i~G~~~~~~-----------~~~~~~~igy~ 83 (293)
T COG1131 18 KTALDGVSFEVEPGEI--FGLLGPNGAGKTTLLKILAG-LLKPTSGEILVLGYDVVKE-----------PAKVRRRIGYV 83 (293)
T ss_pred CEEEeceeEEEcCCeE--EEEECCCCCCHHHHHHHHhC-CcCCCceEEEEcCEeCccC-----------HHHHHhheEEE
Confidence 4445555555666665 89999999999999999998 6678888888887654310 00112235566
Q ss_pred CCCCCCcchhHHHHHHHHHHhcCCC---------------------------CCCC------------CCCceEEEEeCC
Q 018543 99 PSDAGFQDRYVVQEVIKEMAKNRPI---------------------------DTKG------------KRGFKVLVLNEV 139 (354)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~~~---------------------------~~~~------------~~~~~viiiDE~ 139 (354)
+++...++..++++.++.++..... .+|. .++++++|+||+
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 6665555555566666555443321 0110 157899999998
Q ss_pred -CcCCHHHHHHHHHHHhhccCce-eEEEEecCCCcccHHHhhhcc
Q 018543 140 -DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 140 -d~l~~~~~~~Ll~~le~~~~~~-~~Il~~~~~~~l~~~l~sR~~ 182 (354)
..|++.....+++.+.+..... ..|++++|...-...+.+|..
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~ 208 (293)
T COG1131 164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI 208 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence 8899999999999998776544 567777776666666677754
No 217
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.16 E-value=2.9e-10 Score=107.86 Aligned_cols=170 Identities=18% Similarity=0.251 Sum_probs=98.5
Q ss_pred CCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
.|+|+.||..+++.+...+..+ .|++|.||||+|||++++.++. ++.+..+...+++.... .-.... ..-....
T Consensus 190 d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~-llp~~~~~~~le~~~i~--s~~g~~-~~~~~~~ 263 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQG-ILPPLTNEEAIETARIW--SLVGKL-IDRKQIK 263 (499)
T ss_pred CHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhc-ccCCCCCcEEEeccccc--cchhhh-ccccccc
Confidence 6889999999998888777655 3599999999999999999987 44444333333322111 000000 0000000
Q ss_pred cCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc-------------
Q 018543 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------------- 157 (354)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~------------- 157 (354)
...+..... ... ...++.--....+-.+ ......+++|||++.+++..++.|+..||+.
T Consensus 264 ~~Pf~~p~~--s~s-----~~~~~ggg~~~~pG~i-~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~ 335 (499)
T TIGR00368 264 QRPFRSPHH--SAS-----KPALVGGGPIPLPGEI-SLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFY 335 (499)
T ss_pred cCCcccccc--ccc-----hhhhhCCccccchhhh-hccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceec
Confidence 000000000 000 0000000000000000 1234479999999999999999999999764
Q ss_pred cCceeEEEEecCCC-----------------------cccHHHhhhcc-eeeecCCCHHHH
Q 018543 158 SASCRLILCCNSSS-----------------------KVTEAIRSRCL-NIRINSPTEEQI 194 (354)
Q Consensus 158 ~~~~~~Il~~~~~~-----------------------~l~~~l~sR~~-~i~~~~~~~~~~ 194 (354)
+.++.+|.++|... ++..++.+|+. .+.+++++.+++
T Consensus 336 pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 336 PARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred cCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 24577888777421 58889999996 578888887654
No 218
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.15 E-value=2.3e-11 Score=101.26 Aligned_cols=152 Identities=16% Similarity=0.251 Sum_probs=113.9
Q ss_pred ccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (354)
Q Consensus 16 ~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (354)
.|...++..+.-.+..|++ +-|.||+|.||||+.|.+.+ +..++.+.+.+++.....+ ..+-+
T Consensus 12 Fg~k~av~~isf~v~~G~i--~GllG~NGAGKTTtfRmILg-lle~~~G~I~~~g~~~~~~--------------~~~rI 74 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEI--FGLLGPNGAGKTTTFRMILG-LLEPTEGEITWNGGPLSQE--------------IKNRI 74 (300)
T ss_pred cCceeeecceeeeecCCeE--EEeecCCCCCccchHHHHhc-cCCccCceEEEcCcchhhh--------------hhhhc
Confidence 3445566666666677776 88999999999999999998 7788888888888765411 12347
Q ss_pred eeCCCCCCCcchhHHHHHHHHHHhcCCCC---------------------------CC------------CCCCceEEEE
Q 018543 96 ELSPSDAGFQDRYVVQEVIKEMAKNRPID---------------------------TK------------GKRGFKVLVL 136 (354)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------------------------~~------------~~~~~~viii 136 (354)
.|.|++.|.+.+..+.+.+..++...... ++ .-+++.++|+
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 89999999999889999999988877651 01 0157899999
Q ss_pred eCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 137 DE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
||+ ..|++-....|.+.+-+....+..|+.++|.-.-.+.+++|...+
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL 203 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML 203 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhee
Confidence 996 899998888898888666665666666666655556777765433
No 219
>PRK12377 putative replication protein; Provisional
Probab=99.14 E-value=9e-10 Score=95.17 Aligned_cols=152 Identities=17% Similarity=0.257 Sum_probs=84.5
Q ss_pred cccCCCCCCCccc----CHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543 5 DKYRPKTLDQVIV----HQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (354)
Q Consensus 5 ekyrP~~~~~~~g----~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 78 (354)
..++..+|+.+.. +..+.......++. ....+++|+||||+|||+++.++++.+...+...+.+....+
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l----- 140 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV----- 140 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH-----
Confidence 4566678888863 33344444444432 223459999999999999999999988543221111100000
Q ss_pred CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC--CcCCHHHHHHHHHHHhh
Q 018543 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~--d~l~~~~~~~Ll~~le~ 156 (354)
+........ ......+.++. -.+..+|||||+ ...++..+..|..+++.
T Consensus 141 ----------------~~~l~~~~~--~~~~~~~~l~~-----------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~ 191 (248)
T PRK12377 141 ----------------MSRLHESYD--NGQSGEKFLQE-----------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDR 191 (248)
T ss_pred ----------------HHHHHHHHh--ccchHHHHHHH-----------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 000000000 00001111111 134589999998 56678888899999976
Q ss_pred cc-CceeEEEEecCCC-----cccHHHhhhc-----ceeeecCCC
Q 018543 157 YS-ASCRLILCCNSSS-----KVTEAIRSRC-----LNIRINSPT 190 (354)
Q Consensus 157 ~~-~~~~~Il~~~~~~-----~l~~~l~sR~-----~~i~~~~~~ 190 (354)
.- ...++|++||-.. .+.+.+.||. ..|.|.-.+
T Consensus 192 R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 192 RTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred HHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 43 3577888888654 2344455553 236665443
No 220
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.14 E-value=3.1e-09 Score=95.49 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=63.9
Q ss_pred CCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcceeeecCC
Q 018543 128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCLNIRINSP 189 (354)
Q Consensus 128 ~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~~i~~~~~ 189 (354)
.++..++-++|+...+.+.++.|+..+++.. -...+|.++|..+ +..+++++||..+.++.+
T Consensus 234 ~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~ 313 (361)
T smart00763 234 RANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYC 313 (361)
T ss_pred cccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCc
Confidence 4567899999999999999999999997631 1133455555542 678999999999998766
Q ss_pred C-HHHHHHHHHHHHHHc---CCCCCHHHHHHHHH
Q 018543 190 T-EEQIVKVLEFIAKKE---GLQLPSGFATRLAE 219 (354)
Q Consensus 190 ~-~~~~~~~L~~~~~~~---~~~i~~~~l~~i~~ 219 (354)
. .++-.++.++.+... +..+.+.+++.++.
T Consensus 314 l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~ 347 (361)
T smart00763 314 LRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAAL 347 (361)
T ss_pred CCHHHHHHHHHHHhccCcCcccccCchHHHHHHH
Confidence 4 455555666555433 44566666655554
No 221
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=99.13 E-value=9.7e-10 Score=79.93 Aligned_cols=84 Identities=31% Similarity=0.407 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhHhhCCCChhH
Q 018543 254 EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAYYEHKMRRGNKAIF 332 (354)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 332 (354)
.+.+.++++.+.+ +++.+++..+++++..|+++.+|+..++..+.+ .+++..+.+++..++++++||..|+++.+
T Consensus 5 ~~~i~~i~~~~~~----~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e~l 80 (89)
T PF08542_consen 5 PEVIEEILESCLN----GDFKEARKKLYELLVEGYSASDILKQLHEVLVESDIPDSQKAEILKILAEIEYRLSDGASEIL 80 (89)
T ss_dssp HHHHHHHHHHHHH----TCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhHHHHCCCCHHH
Confidence 4566777777776 689999999999999999999999999999988 66788999999999999999999999999
Q ss_pred hHHHHHHHH
Q 018543 333 HLEAFVAKF 341 (354)
Q Consensus 333 ~l~~~i~~~ 341 (354)
||++|++++
T Consensus 81 Ql~alva~~ 89 (89)
T PF08542_consen 81 QLEALVAAF 89 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999999985
No 222
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.3e-09 Score=99.23 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=104.1
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee-eCCCCCCCcchhHHHHH
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGFQDRYVVQEV 113 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~i~~~ 113 (354)
++++|+||+|+|||.+++++++++..+..- |++ ..++......-..++..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~-----------------------------hv~~v~Cs~l~~~~~e~iQk~ 482 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIA-----------------------------HVEIVSCSTLDGSSLEKIQKF 482 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccce-----------------------------EEEEEechhccchhHHHHHHH
Confidence 459999999999999999999987422211 111 12222222221233333
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----H-----H----HHHHHHHHhhc---cCceeEEEEecCCCcccHH
Q 018543 114 IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----E-----A----QHSLRRTMEKY---SASCRLILCCNSSSKVTEA 176 (354)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----~-----~----~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~ 176 (354)
+...-...- ...+.||++|++|.+-. + . ...|.+.+..+ .....+|.+.+....+.+.
T Consensus 483 l~~vfse~~-----~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 483 LNNVFSEAL-----WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHH-----hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 333221110 23458999999988732 1 1 11222333333 2334566666666788888
Q ss_pred Hhhh--cc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Q 018543 177 IRSR--CL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS-LRRAILSFETC 235 (354)
Q Consensus 177 l~sR--~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd-~R~ai~~L~~~ 235 (354)
+.|- ++ ++++++|...+..++|..++.+.......+.++.++..++|- ++...-..+.+
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRa 620 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERA 620 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHH
Confidence 8774 33 689999999999999999998877666778888899999884 44444444433
No 223
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.11 E-value=2.7e-09 Score=103.73 Aligned_cols=53 Identities=26% Similarity=0.447 Sum_probs=47.1
Q ss_pred cCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 7 yrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
-+|..+++++||++++..|..++..++ +++|+||||+||||++++++..+.+.
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcChH
Confidence 468899999999999999999998774 69999999999999999999876543
No 224
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.11 E-value=3.3e-10 Score=91.01 Aligned_cols=160 Identities=19% Similarity=0.272 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (354)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (354)
.+.+.+.-.+..|.+ .+++||+|+||||+.+.+..+ ..+..+.+.+++.+.. .-.. .++..+ ...+.+..
T Consensus 16 ~aL~~vs~~i~~Gef--~fl~GpSGAGKSTllkLi~~~-e~pt~G~i~~~~~dl~--~l~~---~~iP~L--RR~IGvVF 85 (223)
T COG2884 16 EALRDVSFHIPKGEF--VFLTGPSGAGKSTLLKLIYGE-ERPTRGKILVNGHDLS--RLKG---REIPFL--RRQIGVVF 85 (223)
T ss_pred hhhhCceEeecCceE--EEEECCCCCCHHHHHHHHHhh-hcCCCceEEECCeecc--cccc---cccchh--hheeeeEe
Confidence 344555555566666 899999999999999999884 4777788877776543 1000 011110 11222222
Q ss_pred CCCCCc-------------------c---hhHHHHHHHHH-----HhcCCCCCCCC------------CCceEEEEeCC-
Q 018543 100 SDAGFQ-------------------D---RYVVQEVIKEM-----AKNRPIDTKGK------------RGFKVLVLNEV- 139 (354)
Q Consensus 100 ~~~~~~-------------------~---~~~i~~~~~~~-----~~~~~~~~~~~------------~~~~viiiDE~- 139 (354)
++...- . +..+.+.++.+ +...|..+|+. .++.+++-||+
T Consensus 86 QD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPT 165 (223)
T COG2884 86 QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT 165 (223)
T ss_pred eeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCC
Confidence 222211 1 11233333332 11222233321 57899999998
Q ss_pred CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCC
Q 018543 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP 189 (354)
Q Consensus 140 d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~ 189 (354)
..++++....+++++++....+..|++++|...+..+.+.|+..++-..+
T Consensus 166 GNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl 215 (223)
T COG2884 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215 (223)
T ss_pred CCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEE
Confidence 78999999999999999888888888899999999999999877665443
No 225
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.10 E-value=1.8e-09 Score=105.28 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=72.5
Q ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHhhcc---------------------CceeEEEEecCC--CcccHHHhhhcc---
Q 018543 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------------------ASCRLILCCNSS--SKVTEAIRSRCL--- 182 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---------------------~~~~~Il~~~~~--~~l~~~l~sR~~--- 182 (354)
.+..+++|||++.|++..|..|++.|++.. -++++|+++|.. ..+.+++++|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 345799999999999999999999996421 245577777654 478999999987
Q ss_pred e-eeec---CCCHHHH---HHHHHHHHHHcC-C-CCCHHHHHHHHHHcC----------CCHHHHHHHHHHH
Q 018543 183 N-IRIN---SPTEEQI---VKVLEFIAKKEG-L-QLPSGFATRLAEKSN----------RSLRRAILSFETC 235 (354)
Q Consensus 183 ~-i~~~---~~~~~~~---~~~L~~~~~~~~-~-~i~~~~l~~i~~~s~----------gd~R~ai~~L~~~ 235 (354)
+ +.|+ +.+.+.. ..++.+.+++.| . .+++++++.+++.+. .+.|..-+++..+
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 2 4443 2344444 444444555553 2 588999999886321 3467777776654
No 226
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7.9e-10 Score=109.25 Aligned_cols=132 Identities=21% Similarity=0.390 Sum_probs=94.7
Q ss_pred CcccCHHHHHHHHHHHhc-----CC--CCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccc
Q 018543 14 QVIVHQDIAQNLKKLVTE-----QD--CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~~-----~~--~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (354)
.++||++++..+..++.. ++ ... ++|.||.|+|||-+|+++|..+++.....+.+|...|. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~----------e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQ----------E 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhh----------h
Confidence 578999999999988864 22 222 99999999999999999999999988888888877655 1
Q ss_pred ccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-------
Q 018543 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------- 158 (354)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------- 158 (354)
+.....+..++........+...+.. .++.||++||+|..++..++.|++.+++..
T Consensus 633 --------vskligsp~gyvG~e~gg~Lteavrr---------rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr 695 (898)
T KOG1051|consen 633 --------VSKLIGSPPGYVGKEEGGQLTEAVKR---------RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGR 695 (898)
T ss_pred --------hhhccCCCcccccchhHHHHHHHHhc---------CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCc
Confidence 11111222222222223333333322 345899999999999999999999998743
Q ss_pred ----CceeEEEEecCCCc
Q 018543 159 ----ASCRLILCCNSSSK 172 (354)
Q Consensus 159 ----~~~~~Il~~~~~~~ 172 (354)
.+++||+++|....
T Consensus 696 ~Vd~kN~I~IMTsn~~~~ 713 (898)
T KOG1051|consen 696 EVDFKNAIFIMTSNVGSS 713 (898)
T ss_pred EeeccceEEEEecccchH
Confidence 56888988887543
No 227
>PRK08116 hypothetical protein; Validated
Probab=99.09 E-value=5.4e-10 Score=98.23 Aligned_cols=155 Identities=17% Similarity=0.296 Sum_probs=87.2
Q ss_pred cccCCCCCCCcccC---HHHHHHHHHHHhc----CCC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 5 DKYRPKTLDQVIVH---QDIAQNLKKLVTE----QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 5 ekyrP~~~~~~~g~---~~~~~~l~~~l~~----~~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
++|+-.+|+.+... ..+....+..++. ... ..++|+||+|+|||+++.++++++...+...+.++...+.
T Consensus 77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll-- 154 (268)
T PRK08116 77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL-- 154 (268)
T ss_pred HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH--
Confidence 35566678877533 2233344433331 221 2399999999999999999999885432111111100000
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC--CcCCHHHHHHHHHHH
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTM 154 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~--d~l~~~~~~~Ll~~l 154 (354)
. .+.. ...........++++.+ .+..++||||+ +..+...+..|..++
T Consensus 155 ----------~--------~i~~-~~~~~~~~~~~~~~~~l-----------~~~dlLviDDlg~e~~t~~~~~~l~~ii 204 (268)
T PRK08116 155 ----------N--------RIKS-TYKSSGKEDENEIIRSL-----------VNADLLILDDLGAERDTEWAREKVYNII 204 (268)
T ss_pred ----------H--------HHHH-HHhccccccHHHHHHHh-----------cCCCEEEEecccCCCCCHHHHHHHHHHH
Confidence 0 0000 00000000111222211 23479999998 556777888899988
Q ss_pred hh-ccCceeEEEEecCCCc-----ccHHHhhh----cceeeecCCCH
Q 018543 155 EK-YSASCRLILCCNSSSK-----VTEAIRSR----CLNIRINSPTE 191 (354)
Q Consensus 155 e~-~~~~~~~Il~~~~~~~-----l~~~l~sR----~~~i~~~~~~~ 191 (354)
+. +....++|++||.+.. +.+.+.|| |..+.|..++.
T Consensus 205 n~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 205 DSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 75 3445678888887642 44567788 66788877664
No 228
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.09 E-value=9.3e-09 Score=97.89 Aligned_cols=196 Identities=15% Similarity=0.153 Sum_probs=119.0
Q ss_pred CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
.+.+++|.....+.+...+.. ....+++++|++|+||+++|+.+...-.......+.++|..+.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~-------------- 202 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP-------------- 202 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC--------------
Confidence 456688876666555555542 2223489999999999999999976432122122222222110
Q ss_pred cccCceeeeCCCCCCCcchhHHHH-HHHHH----Hh--cCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQE-VIKEM----AK--NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~-~~~~~----~~--~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~--- 158 (354)
+ ..+.. ++... .. ......-...+...++|||++.|+...|..|++++++..
T Consensus 203 -----------------~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~ 264 (445)
T TIGR02915 203 -----------------E-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIER 264 (445)
T ss_pred -----------------h-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEe
Confidence 0 00000 00000 00 000000012344689999999999999999999997532
Q ss_pred --------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCCH--HHHHHHHHH----HHHHcC---CCCCHH
Q 018543 159 --------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEF----IAKKEG---LQLPSG 212 (354)
Q Consensus 159 --------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~----~~~~~~---~~i~~~ 212 (354)
.++++|++++... .+.+.+..|+. .|++||+.. +++..+... ...+.+ ..++++
T Consensus 265 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (445)
T TIGR02915 265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD 344 (445)
T ss_pred CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 2467888877652 45566777764 577777743 344433333 333333 468999
Q ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543 213 FATRLAEKS-NRSLRRAILSFETCRVQ 238 (354)
Q Consensus 213 ~l~~i~~~s-~gd~R~ai~~L~~~~~~ 238 (354)
+++.+..+. .||+|...+.++.++..
T Consensus 345 a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 345 ALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 999998875 89999999999988764
No 229
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.07 E-value=3.1e-09 Score=86.62 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=73.2
Q ss_pred cccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC
Q 018543 15 VIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92 (354)
Q Consensus 15 ~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
++|.....+.+.+.++. ....+++|+|++||||+.+|+++-+.-.......+.++|..+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~------------------ 62 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP------------------ 62 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-------------------
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh------------------
Confidence 46665555555554443 2224599999999999999999976322222223333332211
Q ss_pred ceeeeCCCCCCCcchhHHHHHHHHHHhcCCC-CCC--------CCCCceEEEEeCCCcCCHHHHHHHHHHHhhc------
Q 018543 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPI-DTK--------GKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------ 157 (354)
Q Consensus 93 ~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~--------~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~------ 157 (354)
+...-.++ |...... ... ...+...++|||++.|++..|..|+++|++.
T Consensus 63 -------------~~~~e~~L---FG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g 126 (168)
T PF00158_consen 63 -------------EELLESEL---FGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLG 126 (168)
T ss_dssp -------------HHHHHHHH---HEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCT
T ss_pred -------------cchhhhhh---hccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcccc
Confidence 00000011 1111000 000 0124478999999999999999999999853
Q ss_pred -----cCceeEEEEecCCC-------cccHHHhhhccee
Q 018543 158 -----SASCRLILCCNSSS-------KVTEAIRSRCLNI 184 (354)
Q Consensus 158 -----~~~~~~Il~~~~~~-------~l~~~l~sR~~~i 184 (354)
+.++++|++|+.+- .+.+.+--|..++
T Consensus 127 ~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~~ 165 (168)
T PF00158_consen 127 SDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRLNVF 165 (168)
T ss_dssp SSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTTE
T ss_pred ccccccccceEEeecCcCHHHHHHcCCChHHHHHHhceE
Confidence 23678888888652 4555565555444
No 230
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.05 E-value=6e-09 Score=100.11 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=57.2
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhcc-------------CceeEEEEecCCC-------------cccHHHhhhcce
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS-------------KVTEAIRSRCLN 183 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~-------------~l~~~l~sR~~~ 183 (354)
+..+++|||++.+++..|.+|+..||+.. ..+.+|.++|... .+.+++.||+..
T Consensus 300 ~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdL 379 (509)
T smart00350 300 DNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDL 379 (509)
T ss_pred CCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceee
Confidence 45799999999999999999999997632 3466777777432 589999999943
Q ss_pred --eeecCCCHHHHHHHHHHHHH
Q 018543 184 --IRINSPTEEQIVKVLEFIAK 203 (354)
Q Consensus 184 --i~~~~~~~~~~~~~L~~~~~ 203 (354)
+-..+++.+.-..+++++..
T Consensus 380 i~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 380 LFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEecCCCChHHHHHHHHHHHH
Confidence 44577888877788877654
No 231
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.05 E-value=4.6e-10 Score=85.19 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=33.9
Q ss_pred eEEEEeCCCcCCHHHHHHHHHHHhhcc----------CceeEEEEecCC-C-----cccHHHhhhcc
Q 018543 132 KVLVLNEVDKLSREAQHSLRRTMEKYS----------ASCRLILCCNSS-S-----KVTEAIRSRCL 182 (354)
Q Consensus 132 ~viiiDE~d~l~~~~~~~Ll~~le~~~----------~~~~~Il~~~~~-~-----~l~~~l~sR~~ 182 (354)
.|+++||+.+.++..|.+|++.|++.. +...+|+.|.++ + .++++..+|+.
T Consensus 64 ~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 64 NILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 599999999999999999999998742 122344544444 3 68889999874
No 232
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.04 E-value=1.2e-09 Score=94.23 Aligned_cols=154 Identities=16% Similarity=0.233 Sum_probs=85.5
Q ss_pred ccccCCCCCCCccc----CHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543 4 VDKYRPKTLDQVIV----HQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (354)
Q Consensus 4 ~ekyrP~~~~~~~g----~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 77 (354)
.+.|++.+|+++.. +..++..+..+++. +...+++|+||||+|||+++.++++++...+.....+...++.
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~--- 139 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM--- 139 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH---
Confidence 35678889999863 33456666666653 2223599999999999999999999875432211111100000
Q ss_pred CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC--CHHHHHHHHHHHh
Q 018543 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTME 155 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--~~~~~~~Ll~~le 155 (354)
........ .......++++.+ .+..++||||++.. +......|..+++
T Consensus 140 ------------------~~l~~~~~-~~~~~~~~~l~~l-----------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~ 189 (244)
T PRK07952 140 ------------------SAMKDTFS-NSETSEEQLLNDL-----------SNVDLLVIDEIGVQTESRYEKVIINQIVD 189 (244)
T ss_pred ------------------HHHHHHHh-hccccHHHHHHHh-----------ccCCEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 00000000 0000111222221 24579999998665 3334556777776
Q ss_pred h-ccCceeEEEEecCCC-----cccHHHhhhc-----ceeeecCCC
Q 018543 156 K-YSASCRLILCCNSSS-----KVTEAIRSRC-----LNIRINSPT 190 (354)
Q Consensus 156 ~-~~~~~~~Il~~~~~~-----~l~~~l~sR~-----~~i~~~~~~ 190 (354)
. +.....+|++||-.. .+.+.+.||+ ..+.|.-.+
T Consensus 190 ~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 190 RRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred HHHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence 5 344677888888764 2344555654 256665433
No 233
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=7.3e-10 Score=91.33 Aligned_cols=131 Identities=21% Similarity=0.328 Sum_probs=76.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH-
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK- 115 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~- 115 (354)
+.+.||+|+||||+++.+++ +..+..+.+.+++.... ... ......+.+.+++........+.+.+.
T Consensus 29 ~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~--~~~---------~~~~~~i~~~~q~~~~~~~~tv~~~~~L 96 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILG-LLKPDSGEIKVLGKDIK--KEP---------EEVKRRIGYLPEEPSLYENLTVRENLKL 96 (173)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcc--cch---------HhhhccEEEEecCCccccCCcHHHHhhc
Confidence 99999999999999999998 55667777777765432 000 000112334443333222222322221
Q ss_pred ------HHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCc-eeEEEEecCCCcccHHHhhhccee
Q 018543 116 ------EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 116 ------~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.++-... ...+++++++||+ ..|+......+.+.+++.... ..+|+++++. .....+.+|+.++
T Consensus 97 S~G~~qrv~lara----l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l 168 (173)
T cd03230 97 SGGMKQRLALAQA----LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAIL 168 (173)
T ss_pred CHHHHHHHHHHHH----HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEE
Confidence 0000000 1246799999998 789999999999999876433 4555555554 3444555555443
No 234
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.03 E-value=1.8e-09 Score=88.87 Aligned_cols=110 Identities=21% Similarity=0.334 Sum_probs=85.6
Q ss_pred CCCceEEEEeCC----CcCCHHHHHHHHHHHhhccCceeEEEEec-CCC---cccHHHhhhcceeeecCCCHHHHHHHHH
Q 018543 128 KRGFKVLVLNEV----DKLSREAQHSLRRTMEKYSASCRLILCCN-SSS---KVTEAIRSRCLNIRINSPTEEQIVKVLE 199 (354)
Q Consensus 128 ~~~~~viiiDE~----d~l~~~~~~~Ll~~le~~~~~~~~Il~~~-~~~---~l~~~l~sR~~~i~~~~~~~~~~~~~L~ 199 (354)
.++.++|++.++ +.......+.|..+++.+++++.+|+.++ ..+ ++...+.+.+.++.+.+|+..++..|++
T Consensus 55 F~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~ 134 (172)
T PF06144_consen 55 FGDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIK 134 (172)
T ss_dssp SSSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHH
T ss_pred cCCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHH
Confidence 467899999998 55667788899999999999999998888 443 4677888889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 018543 200 FIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (354)
Q Consensus 200 ~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~ 237 (354)
..+.+.|+.+++++++.+++..++|++.+.+.++.+++
T Consensus 135 ~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 135 ERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998763
No 235
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.02 E-value=3.8e-09 Score=83.61 Aligned_cols=58 Identities=26% Similarity=0.380 Sum_probs=41.8
Q ss_pred eEEEEeCCCcCCHHHHHHHHHHHhhc-cCceeEEEEecCCC-------cccHHHhhhc--ceeeecCC
Q 018543 132 KVLVLNEVDKLSREAQHSLRRTMEKY-SASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSP 189 (354)
Q Consensus 132 ~viiiDE~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~ 189 (354)
..++|+|+|.|+++.|..|...++.. ..++++|++++.+- .+.+.+..|. ..|.+||+
T Consensus 71 gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 71 GTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp SEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE---
T ss_pred CEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCCC
Confidence 67999999999999999999999764 56789999887654 3556666665 35666653
No 236
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.9e-10 Score=102.27 Aligned_cols=156 Identities=17% Similarity=0.278 Sum_probs=100.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~ 116 (354)
+|||||||||||.+||.+.+.|.+.++.-+ +| ++.+. .+-......+|.++.+
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNArePKIV--NG---------------------PeIL~----KYVGeSE~NvR~LFaD 311 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREPKIV--NG---------------------PEILN----KYVGESEENVRKLFAD 311 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCCccc--Cc---------------------HHHHH----HhhcccHHHHHHHHHh
Confidence 999999999999999999998866543311 11 11111 0111122357777766
Q ss_pred HHhcCCCCCCCCCCceEEEEeCCCcCC-------------HHHHHHHHHHHhh--ccCceeEEEEecCCCcccHHHhhhc
Q 018543 117 MAKNRPIDTKGKRGFKVLVLNEVDKLS-------------REAQHSLRRTMEK--YSASCRLILCCNSSSKVTEAIRSRC 181 (354)
Q Consensus 117 ~~~~~~~~~~~~~~~~viiiDE~d~l~-------------~~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~sR~ 181 (354)
..+.... ....++-.|||+||+|.+. ....|.|+.-|+. .-.+..+|..||..+-+.+++.+-.
T Consensus 312 AEeE~r~-~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPG 390 (744)
T KOG0741|consen 312 AEEEQRR-LGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPG 390 (744)
T ss_pred HHHHHHh-hCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCC
Confidence 5443211 1134566899999999873 3467888888742 3457889999999999999998854
Q ss_pred --c-eeeecCCCHHHHHHHHHHH---HHHcCCCCCH-HHHHHHHHHc
Q 018543 182 --L-NIRINSPTEEQIVKVLEFI---AKKEGLQLPS-GFATRLAEKS 221 (354)
Q Consensus 182 --~-~i~~~~~~~~~~~~~L~~~---~~~~~~~i~~-~~l~~i~~~s 221 (354)
. .+++.-|++.....+++-+ .++.+. +++ -.++.|+.++
T Consensus 391 RlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~-l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 391 RLEVQMEISLPDEKGRLQILKIHTKRMRENNK-LSADVDLKELAALT 436 (744)
T ss_pred ceEEEEEEeCCCccCceEEEEhhhhhhhhcCC-CCCCcCHHHHHHHh
Confidence 2 4778888888777776533 333232 332 2366676654
No 237
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.02 E-value=2.8e-10 Score=97.62 Aligned_cols=147 Identities=20% Similarity=0.288 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccC-----
Q 018543 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSA----- 92 (354)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 92 (354)
..+.+.+.-.+.+|.+ ..+.||+||||||+.+++++ ++.+..+.+.++++... .-+.+. -..+..+.+.
T Consensus 15 ~~il~~ls~~i~~G~i--~~iiGpNG~GKSTLLk~l~g-~l~p~~G~V~l~g~~i~--~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 15 KPILDDLSFSIPKGEI--TGILGPNGSGKSTLLKCLAG-LLKPKSGEVLLDGKDIA--SLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred eeEEecceEEecCCcE--EEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCCchh--hcCHHHHhhhEEEeccCCCCCC
Confidence 3344455555555655 88999999999999999998 67888899999887554 111000 0011111110
Q ss_pred --ceeeeC-----C--C---CCCCcchhHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543 93 --NHVELS-----P--S---DAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (354)
Q Consensus 93 --~~i~~~-----~--~---~~~~~~~~~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (354)
.+.++. | . ..+..+...+.+.++.+ +...-..+|+ ..+++++++||+ ..|
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L 169 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169 (258)
T ss_pred CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence 001110 0 0 00111111233333332 1111112222 257899999998 789
Q ss_pred CHHHHHHHHHHHhhcc-C-ceeEEEEecCC
Q 018543 143 SREAQHSLRRTMEKYS-A-SCRLILCCNSS 170 (354)
Q Consensus 143 ~~~~~~~Ll~~le~~~-~-~~~~Il~~~~~ 170 (354)
+...|-.+++.+.+.. . +..+|++.+++
T Consensus 170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 9999999999987654 2 34456655554
No 238
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.02 E-value=9.9e-10 Score=98.81 Aligned_cols=150 Identities=22% Similarity=0.328 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (354)
+.+.+.-.+..|.. +.|.||+|+||||+++++++ +..++.+.+.+++.... .... .....+.+.++
T Consensus 22 ~l~~vsl~i~~Gei--~gllGpNGaGKSTLl~~l~G-l~~p~~G~v~i~G~~~~--~~~~---------~~~~~ig~v~q 87 (306)
T PRK13537 22 VVDGLSFHVQRGEC--FGLLGPNGAGKTTTLRMLLG-LTHPDAGSISLCGEPVP--SRAR---------HARQRVGVVPQ 87 (306)
T ss_pred EEecceEEEeCCcE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEecc--cchH---------HHHhcEEEEec
Confidence 33444444555554 89999999999999999998 66788888888775432 0000 00112333333
Q ss_pred CCCCcchhHHHHHHHHHHhc------------------CCC---------CCCC------------CCCceEEEEeCC-C
Q 018543 101 DAGFQDRYVVQEVIKEMAKN------------------RPI---------DTKG------------KRGFKVLVLNEV-D 140 (354)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~~~------------------~~~---------~~~~------------~~~~~viiiDE~-d 140 (354)
+.......++.+.+..++.. ..+ .+|+ ..+++++++||+ .
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 33322222222222211110 000 1111 157899999998 8
Q ss_pred cCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 141 ~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.|++..+..+++.+.+.......|++++|.....+.+.+|+.++
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il 211 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVI 211 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 89999999999999776443444555555555556777776544
No 239
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.01 E-value=2.2e-09 Score=90.18 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc--CCCCcccccccccccccCCCccccccccccccCceeeeC
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (354)
+.+.+.-.+..|.. +.|.||+|+||||+++.+++ +. .+..+.+.+++.... .. .....+.+.
T Consensus 24 ~l~~~~~~i~~Ge~--~~l~G~nGsGKStLl~~i~G-l~~~~~~~G~i~~~g~~~~--~~-----------~~~~~i~~~ 87 (194)
T cd03213 24 LLKNVSGKAKPGEL--TAIMGPSGAGKSTLLNALAG-RRTGLGVSGEVLINGRPLD--KR-----------SFRKIIGYV 87 (194)
T ss_pred ceecceEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCCceEEEECCEeCc--hH-----------hhhheEEEc
Confidence 33444444444543 99999999999999999998 55 677777777765432 00 001123444
Q ss_pred CCCCCCcchhHHHHHHHHHHhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEE
Q 018543 99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLI 164 (354)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~I 164 (354)
+++........+.+.+........ +++ ..+++++++||+ ..|+...+..+.+.+.+... +..+|
T Consensus 88 ~q~~~~~~~~t~~~~i~~~~~~~~--LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tii 165 (194)
T cd03213 88 PQDDILHPTLTVRETLMFAAKLRG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165 (194)
T ss_pred cCcccCCCCCcHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 444333332334443332111111 111 246799999997 78999999999999977543 45667
Q ss_pred EEecCCCcccHHHhhhccee
Q 018543 165 LCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 165 l~~~~~~~l~~~l~sR~~~i 184 (354)
+++++.+.....+.+|+.++
T Consensus 166 i~sh~~~~~~~~~~d~v~~l 185 (194)
T cd03213 166 CSIHQPSSEIFELFDKLLLL 185 (194)
T ss_pred EEecCchHHHHHhcCEEEEE
Confidence 77776654445556665443
No 240
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.01 E-value=8.4e-10 Score=92.40 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (354)
+++.+.-.+..|.. +-|.||+||||||++++++. +..++.+.+.+++.......+... ....+.+..+
T Consensus 22 ~l~~VS~~i~~Ge~--lgivGeSGsGKSTL~r~l~G-l~~p~~G~I~~~G~~~~~~~~~~~---------~~~~VQmVFQ 89 (252)
T COG1124 22 ALNNVSLEIERGET--LGIVGESGSGKSTLARLLAG-LEKPSSGSILLDGKPLAPKKRAKA---------FYRPVQMVFQ 89 (252)
T ss_pred hhcceeEEecCCCE--EEEEcCCCCCHHHHHHHHhc-ccCCCCceEEECCcccCccccchh---------hccceeEEec
Confidence 44444445555655 89999999999999999998 778899999998865441111110 0111222222
Q ss_pred CC--CCcchhHHHHHHHHHH--------------------------hcCCCCCCC------------CCCceEEEEeCC-
Q 018543 101 DA--GFQDRYVVQEVIKEMA--------------------------KNRPIDTKG------------KRGFKVLVLNEV- 139 (354)
Q Consensus 101 ~~--~~~~~~~i~~~~~~~~--------------------------~~~~~~~~~------------~~~~~viiiDE~- 139 (354)
++ ..++..++++.+.+-. ...|..+++ ..+++++|+||+
T Consensus 90 Dp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt 169 (252)
T COG1124 90 DPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169 (252)
T ss_pred CCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence 22 1122222333222211 112222332 147899999997
Q ss_pred CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcceee
Q 018543 140 DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 140 d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
..|+...|..+++++.+.. .+..+++++++. .+...+++||.++.
T Consensus 170 SaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~ 216 (252)
T COG1124 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMD 216 (252)
T ss_pred hhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeee
Confidence 7889999998888885543 234667766654 56678888886544
No 241
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.01 E-value=3e-10 Score=95.36 Aligned_cols=57 Identities=19% Similarity=0.409 Sum_probs=47.2
Q ss_pred cccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543 15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (354)
Q Consensus 15 ~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 74 (354)
-+++..+++.+.-.++.|.+ +.|.||+||||||+.+++-+ +..++.+.+.+++.+..
T Consensus 10 ~y~~~~av~~v~l~I~~gef--~vliGpSGsGKTTtLkMINr-Liept~G~I~i~g~~i~ 66 (309)
T COG1125 10 RYGNKKAVDDVNLTIEEGEF--LVLIGPSGSGKTTTLKMINR-LIEPTSGEILIDGEDIS 66 (309)
T ss_pred hcCCceeeeeeeEEecCCeE--EEEECCCCCcHHHHHHHHhc-ccCCCCceEEECCeecc
Confidence 34566667777777777776 89999999999999999977 88999999999988665
No 242
>PRK08181 transposase; Validated
Probab=98.99 E-value=1.4e-09 Score=95.09 Aligned_cols=130 Identities=17% Similarity=0.279 Sum_probs=72.8
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCC
Q 018543 24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103 (354)
Q Consensus 24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 103 (354)
.+..|++.+ .+++|+||+|+|||+++.++++++...+...+.+....+. . .+......
T Consensus 98 ~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~------------~--------~l~~a~~~ 155 (269)
T PRK08181 98 AGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV------------Q--------KLQVARRE 155 (269)
T ss_pred HHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHH------------H--------HHHHHHhC
Confidence 334566644 4599999999999999999999774332111110000000 0 00000000
Q ss_pred CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC--CHHHHHHHHHHHhhccCceeEEEEecCCC----------
Q 018543 104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSSS---------- 171 (354)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---------- 171 (354)
....+.++.+ .+..++||||++.. +...+..|+.+++....+..+|++||.+.
T Consensus 156 ----~~~~~~l~~l-----------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D~ 220 (269)
T PRK08181 156 ----LQLESAIAKL-----------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDP 220 (269)
T ss_pred ----CcHHHHHHHH-----------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCCc
Confidence 0011112111 24579999999765 45566789999976544567888888764
Q ss_pred cccHHHhhh----cceeeecCCC
Q 018543 172 KVTEAIRSR----CLNIRINSPT 190 (354)
Q Consensus 172 ~l~~~l~sR----~~~i~~~~~~ 190 (354)
.+..++.|| |.++.|...+
T Consensus 221 ~~a~aildRL~h~~~~i~~~g~s 243 (269)
T PRK08181 221 AMTLAAVDRLVHHATIFEMNVES 243 (269)
T ss_pred cchhhHHHhhhcCceEEecCCcc
Confidence 122344555 4567776644
No 243
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.98 E-value=1.7e-09 Score=98.53 Aligned_cols=136 Identities=21% Similarity=0.297 Sum_probs=80.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH-
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK- 115 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~- 115 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++.... ..... ....+.+.+++.......++.+.+.
T Consensus 70 ~gLlGpNGaGKSTLl~~L~G-l~~p~~G~i~i~G~~~~--~~~~~---------~~~~ig~v~q~~~~~~~~tv~e~l~~ 137 (340)
T PRK13536 70 FGLLGPNGAGKSTIARMILG-MTSPDAGKITVLGVPVP--ARARL---------ARARIGVVPQFDNLDLEFTVRENLLV 137 (340)
T ss_pred EEEECCCCCCHHHHHHHHHc-CCCCCceEEEECCEECC--cchHH---------HhccEEEEeCCccCCCCCcHHHHHHH
Confidence 89999999999999999998 66788888888776432 00000 0011222222222211111111111
Q ss_pred -----------------HHHhcCCC---------CCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 116 -----------------EMAKNRPI---------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 116 -----------------~~~~~~~~---------~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
.+.....+ .+|+ ..+++++|+||+ ..|++..+..+++.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~ 217 (340)
T PRK13536 138 FGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS 217 (340)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 11111111 1111 157899999998 88999999999999977
Q ss_pred ccCceeEEEEecCCCcccHHHhhhccee
Q 018543 157 YSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 157 ~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.......|++++|.....+.+.+|+.++
T Consensus 218 l~~~g~tilisSH~l~e~~~~~d~i~il 245 (340)
T PRK13536 218 LLARGKTILLTTHFMEEAERLCDRLCVL 245 (340)
T ss_pred HHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 6443445555555555667777887544
No 244
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.98 E-value=2.6e-08 Score=78.00 Aligned_cols=153 Identities=15% Similarity=0.221 Sum_probs=82.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC-----cc--hhH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF-----QD--RYV 109 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~--~~~ 109 (354)
++++||||+||||++..++..+...+.....+-+.++. ....+.++.+..+.++..-.+...+.+. +. ...
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR--~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR--EGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee--cCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 89999999999999999999886554332223333333 4445555666555544332222111111 11 011
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEEEEecCC--CcccHHHhhhccee
Q 018543 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSS--SKVTEAIRSRCLNI 184 (354)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~--~~l~~~l~sR~~~i 184 (354)
..++.-...+.. ....+++||||+..| ++....++-.+|.. ..++|.+-+.. +.+...++++..++
T Consensus 86 le~i~~~al~rA------~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~P~v~~ik~~~~v~ 156 (179)
T COG1618 86 LEEIAIPALRRA------LEEADVIIIDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRHPLVQRIKKLGGVY 156 (179)
T ss_pred HHHHhHHHHHHH------hhcCCEEEEecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCChHHHHhhhcCCEE
Confidence 221211111110 122489999999766 44455555555543 23356655544 45777888887766
Q ss_pred eecCCCHHHHHHHHHHHH
Q 018543 185 RINSPTEEQIVKVLEFIA 202 (354)
Q Consensus 185 ~~~~~~~~~~~~~L~~~~ 202 (354)
-| ++++..-.++.+++
T Consensus 157 v~--lt~~NR~~i~~~Il 172 (179)
T COG1618 157 VF--LTPENRNRILNEIL 172 (179)
T ss_pred EE--EccchhhHHHHHHH
Confidence 65 44444445555544
No 245
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.98 E-value=3.5e-08 Score=94.55 Aligned_cols=197 Identities=16% Similarity=0.182 Sum_probs=119.5
Q ss_pred CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
.+.+++|.....+.+...+.. ....+++++|++|+||+++|+++...........+.++|..+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~-------------- 201 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP-------------- 201 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC--------------
Confidence 456788876665555544432 2223499999999999999999877432222222233322111
Q ss_pred cccCceeeeCCCCCCCcchhHHHHHHHHHHhc----CC--CCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc----
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKN----RP--IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---- 158 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~----~~--~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---- 158 (354)
....-.+++...... .. ...........++|||++.|+...|..|++.+++..
T Consensus 202 -----------------~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~ 264 (469)
T PRK10923 202 -----------------KDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRV 264 (469)
T ss_pred -----------------HHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeC
Confidence 000000000000000 00 000011233578999999999999999999997632
Q ss_pred -------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCCH--HHHHHHHHHHHH----HcCC---CCCHHH
Q 018543 159 -------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAK----KEGL---QLPSGF 213 (354)
Q Consensus 159 -------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~~~~----~~~~---~i~~~~ 213 (354)
.++++|++++... .+.+.+..|+. .|.+||+.. +++..++.+.+. +.+. .+++++
T Consensus 265 ~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 344 (469)
T PRK10923 265 GGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPET 344 (469)
T ss_pred CCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 2357888876542 46678888864 577777743 455555544433 3332 478999
Q ss_pred HHHHHHH-cCCCHHHHHHHHHHHHhc
Q 018543 214 ATRLAEK-SNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 214 l~~i~~~-s~gd~R~ai~~L~~~~~~ 238 (354)
+..+..+ ..||+|+..+.++.++..
T Consensus 345 ~~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 345 EAALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 9999885 589999999999988764
No 246
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.98 E-value=4.6e-10 Score=100.96 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=81.0
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 107 (354)
.+..|.. +.|.||+|+||||+++++++ +..++.+.+.+++.... .... .. ...+.+.+++......
T Consensus 15 ~i~~Ge~--~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~----~~-----~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 15 KVREGEV--FGFLGPNGAGKTTTIRMLTT-LLRPTSGTARVAGYDVV--REPR----KV-----RRSIGIVPQYASVDED 80 (302)
T ss_pred EEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcc--cCHH----HH-----HhhcEEecCCCCCCCC
Confidence 3444544 89999999999999999998 66778888888775432 1000 00 0112222222221111
Q ss_pred hH----------------------HHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543 108 YV----------------------VQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (354)
Q Consensus 108 ~~----------------------i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (354)
.+ +.++++.+.- .....+|+ ..+++++++||+ ..|++...
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 11 2222222110 00001121 157899999998 88999999
Q ss_pred HHHHHHHhhccCc-eeEEEEecCCCcccHHHhhhccee
Q 018543 148 HSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 148 ~~Ll~~le~~~~~-~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
..+.+.+.+.... ..+|+++++ ......+.+|+.++
T Consensus 161 ~~l~~~l~~~~~~g~tvi~~sH~-~~~~~~~~d~v~~l 197 (302)
T TIGR01188 161 RAIWDYIRALKEEGVTILLTTHY-MEEADKLCDRIAII 197 (302)
T ss_pred HHHHHHHHHHHhCCCEEEEECCC-HHHHHHhCCEEEEE
Confidence 9999999776433 445554444 44555666776443
No 247
>PRK06526 transposase; Provisional
Probab=98.97 E-value=1.2e-09 Score=95.09 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=41.4
Q ss_pred CceEEEEeCCCcC--CHHHHHHHHHHHhhccCceeEEEEecCCCc----------ccHHHhhh----cceeeecCCCH
Q 018543 130 GFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSSSK----------VTEAIRSR----CLNIRINSPTE 191 (354)
Q Consensus 130 ~~~viiiDE~d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~----------l~~~l~sR----~~~i~~~~~~~ 191 (354)
++.++||||++.+ ++..++.|+.++.....+..+|++||.+.. +..++.+| |.++.|...+.
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~ 236 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSY 236 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCc
Confidence 4589999999876 467778888888654344568888887642 22234454 45677766554
No 248
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.97 E-value=2.8e-08 Score=89.82 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=104.5
Q ss_pred CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc--ccCCCcccccccccc
Q 018543 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK--IDAGSRNIDLELTTL 89 (354)
Q Consensus 12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 89 (354)
|.-++||+..+..|-...-.-.+..+|+.|+.|+||||++|+++. |+.+... +. +..|. ++.|. ..|..|...
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~-LLp~~~~-V~--gc~f~cdP~~P~-~~c~~c~~k 90 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALAD-LLPEIEV-VI--GCPFNCDPDDPE-EMCDECRAK 90 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHH-hCCccce-ec--CCCCCCCCCChh-hhhHHHHhh
Confidence 566789998887665443333444599999999999999999998 4443321 11 21121 11120 011111111
Q ss_pred --------ccCceeeeCCCCCCC-----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543 90 --------SSANHVELSPSDAGF-----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (354)
Q Consensus 90 --------~~~~~i~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~ 156 (354)
.....+.+.....+. .....+...++.-.......+-..++..|+.+||+..|+...++.|+..+++
T Consensus 91 ~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aae 170 (423)
T COG1239 91 GDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAE 170 (423)
T ss_pred ccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHh
Confidence 000111111111111 1111233333320010011111356778999999999999999999999976
Q ss_pred c-------------cCceeEEEEecCCC-cccHHHhhhc-ceeeecCC-CHHHHHHHHHHHHHH
Q 018543 157 Y-------------SASCRLILCCNSSS-KVTEAIRSRC-LNIRINSP-TEEQIVKVLEFIAKK 204 (354)
Q Consensus 157 ~-------------~~~~~~Il~~~~~~-~l~~~l~sR~-~~i~~~~~-~~~~~~~~L~~~~~~ 204 (354)
. +.++.+|.+.|-.. .+.+.|++|+ ..+...++ +.++...++.+...-
T Consensus 171 G~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 171 GVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred CCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 2 23344444455443 7999999996 45776554 566777777776654
No 249
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.97 E-value=4.6e-09 Score=99.35 Aligned_cols=167 Identities=19% Similarity=0.241 Sum_probs=98.1
Q ss_pred CCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (354)
..|.+++|+..+++.+.-.+..| .+++|.||||+|||++++.++. +..+..+...+++..+. ++...
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~g-llpp~~g~e~le~~~i~----------s~~g~ 254 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRING-LLPDLSNEEALESAAIL----------SLVNA 254 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhc-cCCCCCCcEEEecchhh----------hhhcc
Confidence 36778899998888877665544 4599999999999999999987 44444444333332221 00000
Q ss_pred -ccCceeeeCCCCCCCc-chhHHHHHHHHHHhcCCC--CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc--------
Q 018543 90 -SSANHVELSPSDAGFQ-DRYVVQEVIKEMAKNRPI--DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-------- 157 (354)
Q Consensus 90 -~~~~~i~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~-------- 157 (354)
.....+...| +... ...+...++ ...... ..-......++++||++.+++..++.|++.||+.
T Consensus 255 ~~~~~~~~~rP--fr~ph~~~s~~~l~---GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g 329 (506)
T PRK09862 255 ESVQKQWRQRP--FRSPHHSASLTAMV---GGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTR 329 (506)
T ss_pred ccccCCcCCCC--ccCCCccchHHHHh---CCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCC
Confidence 0000000000 0000 000011111 000000 0001234579999999999999999999999763
Q ss_pred -----cCceeEEEEecCCC---------------------cccHHHhhhcce-eeecCCCHHHH
Q 018543 158 -----SASCRLILCCNSSS---------------------KVTEAIRSRCLN-IRINSPTEEQI 194 (354)
Q Consensus 158 -----~~~~~~Il~~~~~~---------------------~l~~~l~sR~~~-i~~~~~~~~~~ 194 (354)
+.++.+|.++|... ++..++.+|+.. +.+++++.+++
T Consensus 330 ~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l 393 (506)
T PRK09862 330 AKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGIL 393 (506)
T ss_pred cceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHH
Confidence 34566777777542 477799999974 88888887643
No 250
>PF13173 AAA_14: AAA domain
Probab=98.97 E-value=3.9e-09 Score=82.40 Aligned_cols=120 Identities=20% Similarity=0.351 Sum_probs=74.5
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 115 (354)
.++++||.|+||||+++.+++.+. +.... +.++..+..... ....++.+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~-----------------------------~yi~~~~~~~~~-~~~~~~~~ 52 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENI-----------------------------LYINFDDPRDRR-LADPDLLE 52 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccc-----------------------------eeeccCCHHHHH-HhhhhhHH
Confidence 389999999999999999998774 11111 222222211110 00000122
Q ss_pred HHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCc----ccHHHhhhcceeeecCCCH
Q 018543 116 EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK----VTEAIRSRCLNIRINSPTE 191 (354)
Q Consensus 116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~----l~~~l~sR~~~i~~~~~~~ 191 (354)
.+.+.. ..+..+|||||++.++ +....+....+.. .+..+|++++.... ..+.+..|+..+++.|++-
T Consensus 53 ~~~~~~------~~~~~~i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf 124 (128)
T PF13173_consen 53 YFLELI------KPGKKYIFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSF 124 (128)
T ss_pred HHHHhh------ccCCcEEEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCH
Confidence 222221 1245899999999885 5666666666654 56788888776653 4566777888999999997
Q ss_pred HHH
Q 018543 192 EQI 194 (354)
Q Consensus 192 ~~~ 194 (354)
.|.
T Consensus 125 ~E~ 127 (128)
T PF13173_consen 125 REF 127 (128)
T ss_pred HHh
Confidence 764
No 251
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.96 E-value=2.2e-09 Score=88.95 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=77.0
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY 108 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (354)
+..|.. +.+.||+|+||||+++.+++ +..+..+.+.+++.... .. .......+.+.+++..... .
T Consensus 25 i~~Ge~--~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~--~~---------~~~~~~~i~~~~q~~~~~~-~ 89 (178)
T cd03247 25 LKQGEK--IALLGRSGSGKSTLLQLLTG-DLKPQQGEITLDGVPVS--DL---------EKALSSLISVLNQRPYLFD-T 89 (178)
T ss_pred EcCCCE--EEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCEEHH--HH---------HHHHHhhEEEEccCCeeec-c
Confidence 344443 99999999999999999998 55677777777665322 00 0000011222222221111 1
Q ss_pred HHHHHH---------HHHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHh
Q 018543 109 VVQEVI---------KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178 (354)
Q Consensus 109 ~i~~~~---------~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 178 (354)
.+.+.+ +.+.-... ...+++++++||+ ..|+......+.+.+.+...+..+|+++++.+.+ + ..
T Consensus 90 tv~~~i~~~LS~G~~qrv~lara----l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~-~~ 163 (178)
T cd03247 90 TLRNNLGRRFSGGERQRLALARI----LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI-E-HM 163 (178)
T ss_pred cHHHhhcccCCHHHHHHHHHHHH----HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-H-hC
Confidence 122111 00000000 1246799999998 7899999999999997765556677777776543 3 34
Q ss_pred hhcce
Q 018543 179 SRCLN 183 (354)
Q Consensus 179 sR~~~ 183 (354)
+|+..
T Consensus 164 d~~~~ 168 (178)
T cd03247 164 DKILF 168 (178)
T ss_pred CEEEE
Confidence 55433
No 252
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.96 E-value=2.2e-09 Score=89.28 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=77.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC---CCcchhHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA---GFQDRYVVQE 112 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~i~~ 112 (354)
.+.|.||+|+||||+++++++ +..+..+.+.+++.... ..... ......+.+.+++. ......++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~--~~~~~-------~~~~~~i~~~~q~~~~~~~~~~~t~~e 97 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFG-LRPPASGEITLDGKPVT--RRSPR-------DAIRAGIAYVPEDRKREGLVLDLSVAE 97 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECC--ccCHH-------HHHhCCeEEecCCcccCcccCCCcHHH
Confidence 399999999999999999998 55677777777765433 00000 00011233433331 1222223444
Q ss_pred HHHHHHhcCC-------CCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 113 VIKEMAKNRP-------IDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 113 ~~~~~~~~~~-------~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+........ +...-..+++++++||+ ..|++.....+.+.+.+... ...+|+++++. ...+.+.+|+.+
T Consensus 98 ~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~ 176 (182)
T cd03215 98 NIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILV 176 (182)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 3322110000 00001246799999997 78999999999998876543 34556655554 333444455433
No 253
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=1.5e-09 Score=89.98 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=73.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH-
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK- 115 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~- 115 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++.... .... ........+.+.+++........+.+.+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~--~~~~------~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 29 VALLGPSGSGKSTLLRCIAG-LEEPDSGSILIDGEDLT--DLED------ELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcc--ccch------hHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 89999999999999999998 55667777777765432 0000 00000112333333322221112222211
Q ss_pred --------HHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhc
Q 018543 116 --------EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRC 181 (354)
Q Consensus 116 --------~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~ 181 (354)
.+.-... ...+++++++||+ ..|+...+..+.+.+.+... +..+|+++++.+ ..+.+.+++
T Consensus 100 ~lS~G~~qr~~la~a----l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i 171 (178)
T cd03229 100 GLSGGQQQRVALARA----LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRV 171 (178)
T ss_pred cCCHHHHHHHHHHHH----HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 0000000 1246699999997 78999999999999977544 355666666543 333344443
No 254
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.96 E-value=7.1e-10 Score=98.95 Aligned_cols=149 Identities=17% Similarity=0.308 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (354)
+++.+.-.++.|.+ +.|.||+||||||+.+++|. |..++.+.+.+++..+.--.|..+ .+.+..+
T Consensus 18 ~l~~i~l~i~~Gef--~vllGPSGcGKSTlLr~IAG-Le~~~~G~I~i~g~~vt~l~P~~R------------~iamVFQ 82 (338)
T COG3839 18 VLKDVNLDIEDGEF--VVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDVTDLPPEKR------------GIAMVFQ 82 (338)
T ss_pred eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhHC------------CEEEEeC
Confidence 44445555666766 99999999999999999998 889999999999987762223322 2333333
Q ss_pred CCCCcchhHHH------------------HHHHHHHhc---------CCCCCCCC------------CCceEEEEeCC-C
Q 018543 101 DAGFQDRYVVQ------------------EVIKEMAKN---------RPIDTKGK------------RGFKVLVLNEV-D 140 (354)
Q Consensus 101 ~~~~~~~~~i~------------------~~~~~~~~~---------~~~~~~~~------------~~~~viiiDE~-d 140 (354)
++..++.+++. +-+++++.. .|..+|+. .+++++++||+ .
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred CccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 33333332222 222222222 22223321 47899999998 6
Q ss_pred cCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcceee
Q 018543 141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 141 ~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
.|+......++..+.+... ...+|.+|++.. -.-++-+|..+..
T Consensus 163 nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~ 208 (338)
T COG3839 163 NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN 208 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe
Confidence 6887776666666644322 245666666543 2335556654433
No 255
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=2.7e-09 Score=90.87 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=37.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++. .....+.+|+.++
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l 201 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLL 201 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEE
Confidence 47899999998 78999999999999977543 34455555544 3444455555433
No 256
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=2.7e-09 Score=87.76 Aligned_cols=125 Identities=22% Similarity=0.368 Sum_probs=73.4
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY 108 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (354)
+..|.. +.+.||+|+||||+++++++ +..+..+.+.+++.... . .........+.+.+++..... .
T Consensus 25 i~~G~~--~~l~G~nGsGKstLl~~i~G-~~~~~~G~i~~~g~~~~--~--------~~~~~~~~~i~~~~~~~~~~~-~ 90 (171)
T cd03228 25 IKPGEK--VAIVGPSGSGKSTLLKLLLR-LYDPTSGEILIDGVDLR--D--------LDLESLRKNIAYVPQDPFLFS-G 90 (171)
T ss_pred EcCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCCCEEEECCEEhh--h--------cCHHHHHhhEEEEcCCchhcc-c
Confidence 344443 99999999999999999998 55667777776665332 0 000000112233333322211 1
Q ss_pred HHHHHH------HH--HHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543 109 VVQEVI------KE--MAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (354)
Q Consensus 109 ~i~~~~------~~--~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 173 (354)
.+.+.+ +. ++.. ...+++++++||+ ..|++.....+.+.+.+......+|+++++.+.+
T Consensus 91 t~~e~lLS~G~~~rl~la~a------l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 91 TIRENILSGGQRQRIAIARA------LLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred hHHHHhhCHHHHHHHHHHHH------HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 122111 00 1111 1246689999997 7899999999999997765555666666665543
No 257
>PRK15115 response regulator GlrR; Provisional
Probab=98.95 E-value=6.6e-08 Score=92.04 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=76.7
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCC
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSP 189 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~ 189 (354)
....++|||++.|+...|..|++.+++.. .++++|++++... .+.+.+..|.. .|.+||+
T Consensus 228 ~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpL 307 (444)
T PRK15115 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPAL 307 (444)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCCh
Confidence 34689999999999999999999997632 1457777776531 23344555543 5666766
Q ss_pred CH--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543 190 TE--EQIVKVLEFIA----KKEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ 238 (354)
Q Consensus 190 ~~--~~~~~~L~~~~----~~~~---~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~ 238 (354)
.. +++..++...+ .+.+ ..+++++++.+..+. .||+|+..+.++.++..
T Consensus 308 r~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 308 AERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 43 35544444433 3233 248999999999987 99999999999987754
No 258
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.95 E-value=5.4e-08 Score=93.16 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=82.7
Q ss_pred ceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCC
Q 018543 131 FKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT 190 (354)
Q Consensus 131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~ 190 (354)
...++|||++.|+.+.|..|++++++.. .++++|++++... .+.+.+..|.. .|++||+.
T Consensus 229 ~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr 308 (463)
T TIGR01818 229 GGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLR 308 (463)
T ss_pred CCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcc
Confidence 4679999999999999999999997632 2457777776542 45567778764 68888887
Q ss_pred --HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Q 018543 191 --EEQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 191 --~~~~~~~L~~~~~----~~~---~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~~ 239 (354)
.+++..++...+. ..+ ..+++++++.|.++. .||+|...+.++.++...
T Consensus 309 ~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 309 ERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred cchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 6677766655443 333 468899999999864 899999999999887653
No 259
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.94 E-value=5.5e-08 Score=90.48 Aligned_cols=204 Identities=18% Similarity=0.158 Sum_probs=121.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
+-+|++++|.......+...++. .....+|+.|.+||||.-+|+++-+.--..+...+.++|..+. .
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP-------e---- 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP-------E---- 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC-------H----
Confidence 45899999987766655555543 2233499999999999999999976322222223333332111 0
Q ss_pred cccccCceeeeCCCCCCCcchhHHHHHHHHHHhcC-CCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc--------
Q 018543 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR-PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-------- 157 (354)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~-------- 157 (354)
..+.+ ....+.. |...+ +... ...+...++..-+|+||+..|+...|..|++.|++.
T Consensus 310 ~LlES-ELFGye~---GAFTG----------A~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLES-ELFGYEK---GAFTG----------ASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHH-HHhCcCC---ccccc----------cccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCC
Confidence 00000 0000100 00000 0000 000001234467999999999999999999999763
Q ss_pred ---cCceeEEEEecCCC-------cccHHHhhhcce--eeecCCC--HHHHHHHHHHHHH----HcC--C-CCCHHHHHH
Q 018543 158 ---SASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPT--EEQIVKVLEFIAK----KEG--L-QLPSGFATR 216 (354)
Q Consensus 158 ---~~~~~~Il~~~~~~-------~l~~~l~sR~~~--i~~~~~~--~~~~~~~L~~~~~----~~~--~-~i~~~~l~~ 216 (354)
+..+++|-+||... ++-+.+--|..+ |.+||+- ++++.......+. +.+ + .++++++..
T Consensus 376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~ 455 (560)
T COG3829 376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALAL 455 (560)
T ss_pred CceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 24577888888653 355555566654 5566653 3444444433333 333 3 378999999
Q ss_pred HHHH-cCCCHHHHHHHHHHHHh
Q 018543 217 LAEK-SNRSLRRAILSFETCRV 237 (354)
Q Consensus 217 i~~~-s~gd~R~ai~~L~~~~~ 237 (354)
+.++ ..||+|..-|.++.+..
T Consensus 456 L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 456 LLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHhCCCCchHHHHHHHHHHHHh
Confidence 8885 69999999999998874
No 260
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=4e-09 Score=89.18 Aligned_cols=142 Identities=14% Similarity=0.170 Sum_probs=83.8
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC---CCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG---PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF 104 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 104 (354)
.+..|.. +.+.||+|+||||+++.+++. .. +..+.+.+++.... . .. ......+.+.+++...
T Consensus 29 ~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~-~~~~~~~~G~i~i~g~~~~--~--------~~-~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 29 VVKPGEM--VLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK--E--------FA-EKYPGEIIYVSEEDVH 94 (202)
T ss_pred EECCCcE--EEEECCCCCCHHHHHHHhccc-CCCCCCcceEEEECCEECc--c--------ch-hhhcceEEEEeccccc
Confidence 3444443 999999999999999999984 44 56677777665332 0 00 0011123444443333
Q ss_pred cchhHHHHHHHHHHh----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEE
Q 018543 105 QDRYVVQEVIKEMAK----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL 165 (354)
Q Consensus 105 ~~~~~i~~~~~~~~~----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il 165 (354)
....++.+.+..... .....+++ ..+++++++||+ ..|++..+..+.+.+++... ...+|+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii 174 (202)
T cd03233 95 FPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFV 174 (202)
T ss_pred CCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 332345554433221 11111221 147799999997 88999999999999987543 345666
Q ss_pred EecCCCcccHHHhhhcce
Q 018543 166 CCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 166 ~~~~~~~l~~~l~sR~~~ 183 (354)
++++.......+.+|+.+
T Consensus 175 ~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 175 SLYQASDEIYDLFDKVLV 192 (202)
T ss_pred EEcCCHHHHHHhCCeEEE
Confidence 666654444555555543
No 261
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.94 E-value=6.7e-09 Score=85.36 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=69.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~ 116 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++.. +.+.++......... +.+.
T Consensus 28 ~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~----------------------i~~~~q~~~LSgGq~--qrv~- 81 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAG-QLIPNGDNDEWDGIT----------------------PVYKPQYIDLSGGEL--QRVA- 81 (177)
T ss_pred EEEECCCCChHHHHHHHHHc-CCCCCCcEEEECCEE----------------------EEEEcccCCCCHHHH--HHHH-
Confidence 89999999999999999998 556776766665432 122222211221111 1111
Q ss_pred HHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-c-eeEEEEecCCCcccHHHhhhccee
Q 018543 117 MAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-S-CRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 117 ~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~-~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
++... ..+++++++||+ ..|++.....+.+.+.+... . ..+|+++++. .....+.+|+.++
T Consensus 82 laral------~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l 145 (177)
T cd03222 82 IAAAL------LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVF 145 (177)
T ss_pred HHHHH------hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEE
Confidence 11111 235689999998 78999999988888876532 2 4555555554 3334555555433
No 262
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.93 E-value=4.6e-08 Score=95.32 Aligned_cols=107 Identities=10% Similarity=0.143 Sum_probs=71.8
Q ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHhhcc-------------CceeEEEEecCCC---cccHHHhhhcce-eeec-CCC
Q 018543 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS---KVTEAIRSRCLN-IRIN-SPT 190 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~---~l~~~l~sR~~~-i~~~-~~~ 190 (354)
.+..+++|||++.+++..|+.|+..|++.. ..+.+|.++|..+ .+.+++.+|+.. +.+. +++
T Consensus 83 A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 83 APRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred CCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC
Confidence 344699999999999999999999997642 3456666666544 688999999854 4443 334
Q ss_pred HHHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH
Q 018543 191 EEQIVKVLEFIAK-----------------------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETC 235 (354)
Q Consensus 191 ~~~~~~~L~~~~~-----------------------~~~~~i~~~~l~~i~~~s---~-gd~R~ai~~L~~~ 235 (354)
.++..+++.+... ...+.++++.+++|++.+ + ..+|..+.++..+
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~A 234 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAA 234 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 4444555544220 125678888888877743 2 2478777776643
No 263
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.92 E-value=7.6e-09 Score=92.53 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=57.9
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcC---
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEG--- 206 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~--- 206 (354)
++-++|+|+++.. ...+.+...+.....++++|+||.+. .+..........+++++++.++..+.+.+.+....
T Consensus 101 ~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 177 (287)
T PF00931_consen 101 KRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESES 177 (287)
T ss_dssp TSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCG-GGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS---
T ss_pred ccceeeeeeeccc--cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 3689999998743 34444555554444568888887764 34444443467899999999999999998875443
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Q 018543 207 LQLPSGFATRLAEKSNRSLRRAILS 231 (354)
Q Consensus 207 ~~i~~~~l~~i~~~s~gd~R~ai~~ 231 (354)
..-.++.+..|++.++|.+ -|+..
T Consensus 178 ~~~~~~~~~~i~~~c~glP-Lal~~ 201 (287)
T PF00931_consen 178 PEDLEDLAKEIVEKCGGLP-LALKL 201 (287)
T ss_dssp -TTSCTHHHHHHHHTTT-H-HHHHH
T ss_pred ccccccccccccccccccc-ccccc
Confidence 1112456789999998865 44443
No 264
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.92 E-value=1e-07 Score=83.41 Aligned_cols=109 Identities=15% Similarity=0.227 Sum_probs=71.0
Q ss_pred CceEEEEeCCCcC---CHHHHHHHHHHHhhcc--CceeEEEEecCCC----cccHHHhhhcceeeecCCCH-HHHHHHHH
Q 018543 130 GFKVLVLNEVDKL---SREAQHSLRRTMEKYS--ASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTE-EQIVKVLE 199 (354)
Q Consensus 130 ~~~viiiDE~d~l---~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~----~l~~~l~sR~~~i~~~~~~~-~~~~~~L~ 199 (354)
+.+++||||+|.+ +...|..++..+.... -...+|++.+..- .-.+.+.||+..+.+++-.. ++....|.
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~ 224 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLA 224 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHH
Confidence 4589999999875 3344555555554332 2355666654332 45688999999999887653 34455554
Q ss_pred HHHHHcCC----CC-CHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 018543 200 FIAKKEGL----QL-PSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 200 ~~~~~~~~----~i-~~~~l~~i~~~s~gd~R~ai~~L~~~~~~ 238 (354)
..-..--+ .+ +++....|...|+|.+.....+|..++..
T Consensus 225 s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~ 268 (302)
T PF05621_consen 225 SFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIA 268 (302)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 43322111 22 46777899999999999999998877654
No 265
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=1.9e-08 Score=79.42 Aligned_cols=27 Identities=52% Similarity=0.776 Sum_probs=23.6
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
.+++|+||||+||||+++.++..+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 459999999999999999999977544
No 266
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.92 E-value=3.8e-09 Score=94.98 Aligned_cols=141 Identities=19% Similarity=0.243 Sum_probs=83.0
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY 108 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (354)
+..|.. +.|.||+|+||||+++++++ +..++.+.+.+++.... ..... ....+.+.+++.......
T Consensus 25 i~~Gei--~~l~G~NGaGKTTLl~~l~G-l~~~~~G~i~i~g~~~~--~~~~~---------~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 25 AQKGRI--VGFLGPNGAGKSTTMKIITG-YLPPDSGSVQVCGEDVL--QNPKE---------VQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred EeCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcc--cChHH---------HHhceEEecCCCCCCCCC
Confidence 334443 99999999999999999998 66788888888776443 10000 011223333322222111
Q ss_pred HHHHHHHH------------------HHhcCCC---------CCCC------------CCCceEEEEeCC-CcCCHHHHH
Q 018543 109 VVQEVIKE------------------MAKNRPI---------DTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (354)
Q Consensus 109 ~i~~~~~~------------------~~~~~~~---------~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (354)
.+.+.+.. +.....+ .+++ ..+++++++||+ ..|++....
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~ 170 (301)
T TIGR03522 91 YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLV 170 (301)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 12222211 1111000 1111 157899999998 889999999
Q ss_pred HHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 149 ~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++.+.+..... .|++++|.....+.+.+|+.++
T Consensus 171 ~l~~~l~~~~~~~-tiii~sH~l~~~~~~~d~i~~l 205 (301)
T TIGR03522 171 EIRNVIKNIGKDK-TIILSTHIMQEVEAICDRVIII 205 (301)
T ss_pred HHHHHHHHhcCCC-EEEEEcCCHHHHHHhCCEEEEE
Confidence 9999998775554 4555555555556777777544
No 267
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.92 E-value=1.3e-08 Score=93.28 Aligned_cols=204 Identities=19% Similarity=0.175 Sum_probs=122.9
Q ss_pred CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
.+.++||+..+...+...++- .....+||.|..||||.-+|++|-..--..+...++++|..+. + +.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP----------e-sL 289 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP----------E-SL 289 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc----------h-HH
Confidence 467899998877766665542 2323499999999999999999976432233333444433211 0 00
Q ss_pred cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc-----------
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----------- 157 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~----------- 157 (354)
..+ ++-...-|.. ...+.+... .....+..-+|+||+.-|+...|..|++.+.+.
T Consensus 290 lES----ELFGHeKGAF--------TGA~~~r~G--rFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 290 LES----ELFGHEKGAF--------TGAINTRRG--RFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHH----HHhccccccc--------ccchhccCc--ceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCcee
Confidence 000 0000000000 000000000 001234467999999999999999999999653
Q ss_pred cCceeEEEEecCCC-------cccHHHhhhcce--eeecCCCH--HH---HH-HHHHHHHHHcCC---CCCHHHHHHHHH
Q 018543 158 SASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPTE--EQ---IV-KVLEFIAKKEGL---QLPSGFATRLAE 219 (354)
Q Consensus 158 ~~~~~~Il~~~~~~-------~l~~~l~sR~~~--i~~~~~~~--~~---~~-~~L~~~~~~~~~---~i~~~~l~~i~~ 219 (354)
.-.+++|.+||..- ++-+.+--|..+ +.+||+-+ ++ +. .++++...+.|. .+++++++.+.+
T Consensus 356 kVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 356 KVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 12477888888653 455666667655 45555532 22 22 334444444454 688999999998
Q ss_pred H-cCCCHHHHHHHHHHHHhcC
Q 018543 220 K-SNRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 220 ~-s~gd~R~ai~~L~~~~~~~ 239 (354)
. ..||+|...|.++.++...
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 5 5899999999999887743
No 268
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=2.4e-09 Score=91.46 Aligned_cols=153 Identities=18% Similarity=0.325 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee---
Q 018543 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE--- 96 (354)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--- 96 (354)
.+++.+.-.+..|.+ +.+.||+|+||||+++++.+ +..+..+.+.+.+.......+.. .+.++.+...+.
T Consensus 18 ~vl~~i~l~v~~G~~--~~iiGPNGaGKSTLlK~iLG-ll~p~~G~i~~~g~~~~~~~~~~----~IgYVPQ~~~~d~~f 90 (254)
T COG1121 18 PVLEDISLSVEKGEI--TALIGPNGAGKSTLLKAILG-LLKPSSGEIKIFGKPVRKRRKRL----RIGYVPQKSSVDRSF 90 (254)
T ss_pred eeeeccEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCcCCcceEEEccccccccccCC----eEEEcCcccccCCCC
Confidence 355555555666765 88999999999999999998 77888888887765433111000 111221111111
Q ss_pred ------eCCCC----CCC------cchhHHHHHHHHHHhc----CCC-CCCC------------CCCceEEEEeCC-CcC
Q 018543 97 ------LSPSD----AGF------QDRYVVQEVIKEMAKN----RPI-DTKG------------KRGFKVLVLNEV-DKL 142 (354)
Q Consensus 97 ------~~~~~----~~~------~~~~~i~~~~~~~~~~----~~~-~~~~------------~~~~~viiiDE~-d~l 142 (354)
+.... .+. .++..+.+.++.+.-. .++ .+|+ ..+++++++||+ ..+
T Consensus 91 P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gv 170 (254)
T COG1121 91 PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGV 170 (254)
T ss_pred CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccC
Confidence 00000 000 0112334444332111 111 1222 257899999997 889
Q ss_pred CHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhh
Q 018543 143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSR 180 (354)
Q Consensus 143 ~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR 180 (354)
+...+..+.++|.+... ++.+++++++.+.+ ....+|
T Consensus 171 D~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v-~~~~D~ 208 (254)
T COG1121 171 DVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV-MAYFDR 208 (254)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh-HhhCCE
Confidence 99999999999977654 44455555555443 444444
No 269
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.91 E-value=1.8e-09 Score=87.88 Aligned_cols=153 Identities=18% Similarity=0.327 Sum_probs=74.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC-C-CC-cchhHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD-A-GF-QDRYVVQE 112 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~-~~~~~i~~ 112 (354)
|++|+|+||+||||+++.++..+...+...-.+.+.... ....+.++.+..+.++....+...+ . +. ..++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr--~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v-- 76 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVR--ENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFV-- 76 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEE--TTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE--
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeeccc--CCCceEEEEEEECcCCCccccccccccccccCCCEEE--
Confidence 589999999999999999998774322111111111111 2223333444444333222221111 0 00 000111
Q ss_pred HHHHHHhcCCCCCC-CCCCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEEEEecCC--CcccHHHhhh--ccee
Q 018543 113 VIKEMAKNRPIDTK-GKRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSS--SKVTEAIRSR--CLNI 184 (354)
Q Consensus 113 ~~~~~~~~~~~~~~-~~~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~--~~l~~~l~sR--~~~i 184 (354)
..+.+....--.+. .....+++||||+..| .+..++++.++|+. +.++|.+.... ..+.+.+++| +.++
T Consensus 77 ~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s---~~~vi~vv~~~~~~~~l~~i~~~~~~~i~ 153 (168)
T PF03266_consen 77 DLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDS---NKPVIGVVHKRSDNPFLEEIKRRPDVKIF 153 (168)
T ss_dssp -HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCT---TSEEEEE--SS--SCCHHHHHTTTTSEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcC---CCcEEEEEecCCCcHHHHHHHhCCCcEEE
Confidence 11222222110011 0135589999998666 57788889999882 34466655544 4689999998 7788
Q ss_pred eecCCCHHHHH
Q 018543 185 RINSPTEEQIV 195 (354)
Q Consensus 185 ~~~~~~~~~~~ 195 (354)
.+.+-+.+.+.
T Consensus 154 ~vt~~NRd~l~ 164 (168)
T PF03266_consen 154 EVTEENRDALP 164 (168)
T ss_dssp E--TTTCCCHH
T ss_pred EeChhHHhhHh
Confidence 88776655443
No 270
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.91 E-value=5.7e-08 Score=83.67 Aligned_cols=176 Identities=17% Similarity=0.223 Sum_probs=102.2
Q ss_pred cccCHHHHHHHHHHHh----cCCC--Ce-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543 15 VIVHQDIAQNLKKLVT----EQDC--PH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 15 ~~g~~~~~~~l~~~l~----~~~~--~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
+.||.-+++.+-..++ +..+ |- +=|+|++||||...++.+|+.++..+...-.+.-..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fv--------------- 148 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFV--------------- 148 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhh---------------
Confidence 5677555554444443 3322 22 669999999999999999998865443211110000
Q ss_pred ccccCceeeeCCCCCCCcc--hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-------
Q 018543 88 TLSSANHVELSPSDAGFQD--RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------- 158 (354)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------- 158 (354)
-..........+ +..++..+....+ ..+..++|+||+|.|++...+.|...++-++
T Consensus 149 -------at~hFP~~~~ie~Yk~eL~~~v~~~v~--------~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~f 213 (344)
T KOG2170|consen 149 -------ATLHFPHASKIEDYKEELKNRVRGTVQ--------ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDF 213 (344)
T ss_pred -------hhccCCChHHHHHHHHHHHHHHHHHHH--------hcCCceEEechhhhcCHhHHHHHhhhhccccccccccc
Confidence 000000111000 0112222222121 1345799999999999999999999987543
Q ss_pred CceeEEEEecCCCcccHH-----------------------Hh-------------hhc-------ceeeecCCCHHHHH
Q 018543 159 ASCRLILCCNSSSKVTEA-----------------------IR-------------SRC-------LNIRINSPTEEQIV 195 (354)
Q Consensus 159 ~~~~~Il~~~~~~~l~~~-----------------------l~-------------sR~-------~~i~~~~~~~~~~~ 195 (354)
.+.+||+.+|.-...+.. +. ||. ..|.|-|++...+.
T Consensus 214 rkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~ 293 (344)
T KOG2170|consen 214 RKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVR 293 (344)
T ss_pred cceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHH
Confidence 457899999865432221 10 111 24667777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 018543 196 KVLEFIAKKEGLQLPSGFATRLAEK 220 (354)
Q Consensus 196 ~~L~~~~~~~~~~i~~~~l~~i~~~ 220 (354)
.-++..+.++|...+.+.++.+++.
T Consensus 294 ~C~r~el~~rg~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 294 SCIRAELRKRGLAPDQDFVERVANS 318 (344)
T ss_pred HHHHHHHHhcccccchHHHHHHHHh
Confidence 7777777777776666666666554
No 271
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.90 E-value=3.5e-09 Score=90.74 Aligned_cols=54 Identities=11% Similarity=0.271 Sum_probs=39.6
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+.+ . +.+|+.++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~-~~d~v~~l 213 (218)
T cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-E-YADRIIEL 213 (218)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH-h-hhcEEEEe
Confidence 57899999998 78999999999999977643 46677777776543 3 55554443
No 272
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.90 E-value=4.8e-09 Score=89.22 Aligned_cols=134 Identities=17% Similarity=0.291 Sum_probs=75.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc----------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD---------- 106 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------- 106 (354)
+.+.||+|+||||+++.+++ +..+..+.+.+++.... ... . ....+.+.+++.....
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~--~~~-~---------~~~~i~~~~q~~~~~~~~tv~e~l~~ 95 (208)
T cd03268 29 YGFLGPNGAGKTTTMKIILG-LIKPDSGEITFDGKSYQ--KNI-E---------ALRRIGALIEAPGFYPNLTARENLRL 95 (208)
T ss_pred EEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCCccc--chH-H---------HHhhEEEecCCCccCccCcHHHHHHH
Confidence 99999999999999999998 55677777777765432 000 0 0001122222211111
Q ss_pred --------hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-
Q 018543 107 --------RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA- 159 (354)
Q Consensus 107 --------~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~- 159 (354)
...+.+.++.+. ...+..+|+ ..+++++++||+ ..|+......+.+.+.+...
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 175 (208)
T cd03268 96 LARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175 (208)
T ss_pred HHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHC
Confidence 111222222210 000111121 247899999998 78999999999999876543
Q ss_pred ceeEEEEecCCCcccHHHhhhccee
Q 018543 160 SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 160 ~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+..+|+++++. .....+.+|+..+
T Consensus 176 ~~tii~~tH~~-~~~~~~~d~v~~l 199 (208)
T cd03268 176 GITVLISSHLL-SEIQKVADRIGII 199 (208)
T ss_pred CCEEEEEcCCH-HHHHHhcCEEEEE
Confidence 34455555544 3445555555443
No 273
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.90 E-value=7e-09 Score=84.55 Aligned_cols=130 Identities=18% Similarity=0.265 Sum_probs=74.1
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY 108 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (354)
+..|.. +.|.||+|+||||+.+.+++ +..+..+.+.+++.... ..... .. ....+.+.++ .....
T Consensus 23 i~~Ge~--~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~--~~~~~-----~~--~~~~i~~~~q---LS~G~ 87 (163)
T cd03216 23 VRRGEV--HALLGENGAGKSTLMKILSG-LYKPDSGEILVDGKEVS--FASPR-----DA--RRAGIAMVYQ---LSVGE 87 (163)
T ss_pred EeCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEECC--cCCHH-----HH--HhcCeEEEEe---cCHHH
Confidence 344443 99999999999999999998 55677777777665332 00000 00 0111222222 11111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 109 VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
. +. +. ++... ..+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ..+.+.+|+..
T Consensus 88 ~-qr-l~-laral------~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~ 154 (163)
T cd03216 88 R-QM-VE-IARAL------ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTV 154 (163)
T ss_pred H-HH-HH-HHHHH------hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 1 11 11 11111 235689999998 78999999999999976643 445566655543 33444555433
No 274
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.90 E-value=1.3e-07 Score=90.47 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=77.6
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCC
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSP 189 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~ 189 (354)
...+++|||++.|+...|..|++.+++.. .++++|++++... .+.+.+..|+. .|.+||+
T Consensus 237 ~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppL 316 (457)
T PRK11361 237 NEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPL 316 (457)
T ss_pred CCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCCh
Confidence 34689999999999999999999997531 2367888877542 35556666654 4666676
Q ss_pred C--HHHHHHHHHH----HHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543 190 T--EEQIVKVLEF----IAKKEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ 238 (354)
Q Consensus 190 ~--~~~~~~~L~~----~~~~~~---~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~ 238 (354)
. .+++..+... ...+.+ ..+++++++.+..+. .||+|+..+.++.++..
T Consensus 317 reR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 317 RDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred hhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 5 3444443333 333223 368899999998865 89999999999987754
No 275
>PRK04132 replication factor C small subunit; Provisional
Probab=98.90 E-value=6.8e-10 Score=110.32 Aligned_cols=49 Identities=47% Similarity=0.899 Sum_probs=46.9
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHH
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTL 50 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtl 50 (354)
+|++||||++|+|++||+++++.|+.+++.+++||++|+||||+||+..
T Consensus 8 ~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 8 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred cHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 7999999999999999999999999999999999999999999999643
No 276
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.90 E-value=4.5e-09 Score=89.93 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=38.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|+......+.+.+.+.. .+..+|++|++.+ ....+.+|+.+
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~ 210 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLT 210 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 57899999998 7899999999999887653 3455666666654 33445555433
No 277
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.89 E-value=5.8e-09 Score=89.53 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
.+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... .... .. ...+.+.+++
T Consensus 18 l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~--~~~~----~~-----~~~i~~v~q~ 83 (220)
T cd03263 18 VDDLSLNVYKGEI--FGLLGHNGAGKTTTLKMLTG-ELRPTSGTAYINGYSIR--TDRK----AA-----RQSLGYCPQF 83 (220)
T ss_pred ecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecc--cchH----HH-----hhhEEEecCc
Confidence 3334334445544 99999999999999999998 56777787777765432 0000 00 0011121111
Q ss_pred CCCcch----------------------hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-Cc
Q 018543 102 AGFQDR----------------------YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DK 141 (354)
Q Consensus 102 ~~~~~~----------------------~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~ 141 (354)
...... ..+.++++.+.- .....+++ ..+++++++||+ ..
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~ 163 (220)
T cd03263 84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163 (220)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 111100 011222221110 00111111 257899999997 78
Q ss_pred CCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543 142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 142 l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
|++.....+.+.+.+......+|+++++++ ....+.+|+.+
T Consensus 164 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 204 (220)
T cd03263 164 LDPASRRAIWDLILEVRKGRSIILTTHSMD-EAEALCDRIAI 204 (220)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhcCEEEE
Confidence 999999999999987655555666666554 33445566543
No 278
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.89 E-value=1.2e-08 Score=84.04 Aligned_cols=129 Identities=23% Similarity=0.351 Sum_probs=74.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHH--
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI-- 114 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~-- 114 (354)
+.|.||+|+||||+++.+++ +..+..+.+.+++.... ... .......+.+.+++...... ++.+.+
T Consensus 31 ~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~--~~~--------~~~~~~~i~~~~q~~~~~~~-tv~~~lLS 98 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILG-LLRPTSGRVRLDGADIS--QWD--------PNELGDHVGYLPQDDELFSG-SIAENILS 98 (173)
T ss_pred EEEECCCCCCHHHHHHHHHh-ccCCCCCeEEECCEEcc--cCC--------HHHHHhheEEECCCCccccC-cHHHHCcC
Confidence 89999999999999999998 55677777777765432 000 00001123333333322211 222211
Q ss_pred ----HHHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 115 ----KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 115 ----~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+.++-... ...+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+.+ . ..+|+.+
T Consensus 99 ~G~~qrv~la~a----l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~-~~d~v~~ 167 (173)
T cd03246 99 GGQRQRLGLARA----LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-A-SADRILV 167 (173)
T ss_pred HHHHHHHHHHHH----HhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-H-hCCEEEE
Confidence 00000000 1246689999998 78999999999999876543 45677777766432 2 3444433
No 279
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.9e-08 Score=84.82 Aligned_cols=198 Identities=21% Similarity=0.204 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeee
Q 018543 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (354)
+.+++..+...+..|+. -+.++|+-|+|||.+.|++...+.....-.+.++...+. -..+...-..++
T Consensus 36 h~e~l~~l~~~i~d~qg-~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s-----------~~~~~~ai~~~l 103 (269)
T COG3267 36 HNEALLMLHAAIADGQG-ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLS-----------DATLLEAIVADL 103 (269)
T ss_pred hhHHHHHHHHHHhcCCc-eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchh-----------HHHHHHHHHHHh
Confidence 46667777777776652 288999999999999997766443222111122211111 000000000000
Q ss_pred CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHh---hccCceeEEEEecCCC---
Q 018543 98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME---KYSASCRLILCCNSSS--- 171 (354)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le---~~~~~~~~Il~~~~~~--- 171 (354)
.. +....-...++..-..+..... ..+.+-++++||++.+..++..+|+...+ +.+..-.++++....-
T Consensus 104 ~~-~p~~~~~~~~e~~~~~L~al~~----~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~ 178 (269)
T COG3267 104 ES-QPKVNVNAVLEQIDRELAALVK----KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPR 178 (269)
T ss_pred cc-CccchhHHHHHHHHHHHHHHHH----hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchh
Confidence 00 1111111111111111111111 12334799999999999998888877764 3333344555543221
Q ss_pred ---cccHHHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 172 ---KVTEAIRSRCLN-IRINSPTEEQIVKVLEFIAKKEGLQ---LPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 172 ---~l~~~l~sR~~~-i~~~~~~~~~~~~~L~~~~~~~~~~---i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
.....+..||.+ |..+|++.++...+|++.++..+.. ++++++..+...+.| .-+++|.+-
T Consensus 179 lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~ 246 (269)
T COG3267 179 LRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLA 246 (269)
T ss_pred hchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHH
Confidence 133456778988 9999999999999999998876543 568999999999999 556666543
No 280
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=6.5e-09 Score=87.18 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=76.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc-CCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 115 (354)
+.|.||+|+||||+++.++.... .+..+.+.+++.... ......+.+.+++.......++.+.+.
T Consensus 36 ~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~--------------~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (192)
T cd03232 36 TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD--------------KNFQRSTGYVEQQDVHSPNLTVREALR 101 (192)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--------------HHhhhceEEecccCccccCCcHHHHHH
Confidence 89999999999999999997432 356666666654321 000112333333333333233444443
Q ss_pred HHHhcCCCCCC------------CCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhc
Q 018543 116 EMAKNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC 181 (354)
Q Consensus 116 ~~~~~~~~~~~------------~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~ 181 (354)
...... .++ ...+++++++||+ ..++......+.+.+.+... +..+|+++++.+.....+.+|+
T Consensus 102 ~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i 179 (192)
T cd03232 102 FSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRL 179 (192)
T ss_pred HHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEE
Confidence 211111 111 1246799999997 78999999999999876543 4567777777553233344544
No 281
>PRK06921 hypothetical protein; Provisional
Probab=98.88 E-value=1.3e-08 Score=89.38 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=23.7
Q ss_pred CCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 34 CPHLLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 34 ~~~~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
..+++|+||+|+|||+++.++++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 345999999999999999999998743
No 282
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.88 E-value=6.8e-09 Score=89.87 Aligned_cols=149 Identities=15% Similarity=0.251 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++............ ...+.+.+++.
T Consensus 17 ~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~---------~~~i~~~~q~~ 84 (232)
T cd03218 17 NGVSLSVKQGEI--VGLLGPNGAGKTTTFYMIVG-LVKPDSGKILLDGQDITKLPMHKRA---------RLGIGYLPQEA 84 (232)
T ss_pred ccceeEecCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccCCHhHHH---------hccEEEecCCc
Confidence 333334445544 99999999999999999998 5567778777776543200000000 00111111111
Q ss_pred CCcch----------------------hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543 103 GFQDR----------------------YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKL 142 (354)
Q Consensus 103 ~~~~~----------------------~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l 142 (354)
..... ..+.++++.+.- ..+..+++ ..+++++++||+ ..|
T Consensus 85 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 164 (232)
T cd03218 85 SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGV 164 (232)
T ss_pred cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccC
Confidence 11000 012222222110 00111121 157899999997 889
Q ss_pred CHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 143 ~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+......+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 165 D~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 206 (232)
T cd03218 165 DPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYII 206 (232)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999998876543 455666666654 345555665433
No 283
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.88 E-value=1.6e-09 Score=97.33 Aligned_cols=154 Identities=14% Similarity=0.259 Sum_probs=90.8
Q ss_pred ccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (354)
Q Consensus 16 ~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (354)
+|...+++.+.-.++.|.+ +-|.||+||||||+.|++|+ +..++.+.+.+++..+.-..|.++ .+
T Consensus 15 yg~~~av~~isl~i~~Gef--~~lLGPSGcGKTTlLR~IAG-fe~p~~G~I~l~G~~i~~lpp~kR------------~i 79 (352)
T COG3842 15 FGDFTAVDDISLDIKKGEF--VTLLGPSGCGKTTLLRMIAG-FEQPSSGEILLDGEDITDVPPEKR------------PI 79 (352)
T ss_pred cCCeeEEecceeeecCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhhc------------cc
Confidence 3444445556666666765 88999999999999999998 888999999999987762222222 22
Q ss_pred eeCCCCCCCcchhH-----------------------HHHHHHHH-----HhcCCCCCCC------------CCCceEEE
Q 018543 96 ELSPSDAGFQDRYV-----------------------VQEVIKEM-----AKNRPIDTKG------------KRGFKVLV 135 (354)
Q Consensus 96 ~~~~~~~~~~~~~~-----------------------i~~~~~~~-----~~~~~~~~~~------------~~~~~vii 135 (354)
.+..+++...+..+ +.+.++.+ +...+..+|+ ..++++++
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 23333322222222 22222211 1112222222 14789999
Q ss_pred EeCC-CcCCHHHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhhcceee
Q 018543 136 LNEV-DKLSREAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 136 iDE~-d~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
+||+ ..|+......+...+.+. ..+..+|++|++.+.- -++.+|+.+..
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA-l~msDrI~Vm~ 211 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA-LAMSDRIAVMN 211 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH-hhhccceEEcc
Confidence 9997 778766555554444332 1357788888886532 24556654433
No 284
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=8.3e-09 Score=87.94 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=39.7
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++..+..+.+.+++......+|+++++.+ ....+.+|+.++
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~-~~~~~~d~i~~l 202 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVE-DVESLCNQVAVL 202 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 57899999998 78999999999999987655555566555543 344555665443
No 285
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.88 E-value=4.6e-09 Score=88.66 Aligned_cols=144 Identities=10% Similarity=0.072 Sum_probs=83.0
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh-cCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
.+.-.+..|. .+.|.||+|+||||+++.+++.. ..+..+.+.+++.......+. .. ....+.+.+++.
T Consensus 18 ~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~--------~~-~~~~i~~v~q~~ 86 (200)
T cd03217 18 GVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE--------ER-ARLGIFLAFQYP 86 (200)
T ss_pred ccceEECCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH--------HH-hhCcEEEeecCh
Confidence 3333344444 39999999999999999999854 356777777777543300000 00 011133333333
Q ss_pred CCcchhHHHHHHHHHHhcCCCCCC------------CCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEec
Q 018543 103 GFQDRYVVQEVIKEMAKNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCN 168 (354)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~------------~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~ 168 (354)
.......+.+.++... ..++ ...+++++++||+ ..|+......+.+.+.+... ...+|++++
T Consensus 87 ~~~~~~~~~~~l~~~~----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh 162 (200)
T cd03217 87 PEIPGVKNADFLRYVN----EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162 (200)
T ss_pred hhccCccHHHHHhhcc----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 2222223444332211 0111 1246799999998 78999999999888876543 455666666
Q ss_pred CCCcccHH-Hhhhcce
Q 018543 169 SSSKVTEA-IRSRCLN 183 (354)
Q Consensus 169 ~~~~l~~~-l~sR~~~ 183 (354)
+.+ .... +.+|+.+
T Consensus 163 ~~~-~~~~~~~d~i~~ 177 (200)
T cd03217 163 YQR-LLDYIKPDRVHV 177 (200)
T ss_pred CHH-HHHHhhCCEEEE
Confidence 654 4444 4666543
No 286
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.88 E-value=6e-09 Score=93.81 Aligned_cols=148 Identities=18% Similarity=0.299 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
.+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... ..... ....+.+.+++
T Consensus 20 l~~vsl~i~~Ge~--~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~---------~~~~i~~v~q~ 85 (303)
T TIGR01288 20 VNDLSFTIARGEC--FGLLGPNGAGKSTIARMLLG-MISPDRGKITVLGEPVP--SRARL---------ARVAIGVVPQF 85 (303)
T ss_pred EcceeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECc--ccHHH---------HhhcEEEEecc
Confidence 3444444555544 99999999999999999998 56777787777765432 00000 00112222221
Q ss_pred CCCcchhH----------------------HHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-Cc
Q 018543 102 AGFQDRYV----------------------VQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DK 141 (354)
Q Consensus 102 ~~~~~~~~----------------------i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~ 141 (354)
.......+ +.++++.+. ......+|+ ..+++++++||+ ..
T Consensus 86 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 165 (303)
T TIGR01288 86 DNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTG 165 (303)
T ss_pred ccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 11111011 111221110 000001111 157899999998 88
Q ss_pred CCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 142 LSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 142 l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
|++.....+.+.+.+... +..+|+++++. .....+.+|+.++
T Consensus 166 LD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l 208 (303)
T TIGR01288 166 LDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVL 208 (303)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEE
Confidence 999999999999977643 34455555544 4555666776443
No 287
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.88 E-value=6.9e-09 Score=88.65 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=38.0
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~ 209 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVII 209 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 47899999998 78999999999999977533 455666666543 33444455443
No 288
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.87 E-value=2.2e-08 Score=90.22 Aligned_cols=136 Identities=20% Similarity=0.301 Sum_probs=75.6
Q ss_pred HHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee-e
Q 018543 21 IAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-L 97 (354)
Q Consensus 21 ~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 97 (354)
+....+.+++. ....+++|+||+|+|||+++.++|+++...+...+.+....+. . +
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~---------------------~~l 226 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELI---------------------EIL 226 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHH---------------------HHH
Confidence 34444445552 1224599999999999999999999886443221111110000 0 0
Q ss_pred CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC--cCCHHHHHHHHHHHhhc-cCceeEEEEecCCC---
Q 018543 98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVD--KLSREAQHSLRRTMEKY-SASCRLILCCNSSS--- 171 (354)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d--~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~--- 171 (354)
........ ......+ .. -.+..++||||+. ..++..+..|+.+++.. ..+..+|++||...
T Consensus 227 ~~~~~~~~--~~~~~~~---~~--------l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 227 REIRFNND--KELEEVY---DL--------LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred HHHHhccc--hhHHHHH---HH--------hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 00000000 0000001 11 1244899999984 45677788899999664 33567888888754
Q ss_pred --cccHHHhhhc----ceeeecCCC
Q 018543 172 --KVTEAIRSRC----LNIRINSPT 190 (354)
Q Consensus 172 --~l~~~l~sR~----~~i~~~~~~ 190 (354)
.+.+.+.||. .++.|...+
T Consensus 294 ~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 294 LKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred HHHHhHHHHHHHHcCCEEEEecCcC
Confidence 2345677774 457775544
No 289
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1e-07 Score=82.72 Aligned_cols=90 Identities=27% Similarity=0.460 Sum_probs=57.5
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 115 (354)
++|+.||.|+|||.+|+.+|+.+.-|- .. .+..+ +. +.|+.. ..+..++.
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPF-----------ai--------ADATt--------LT--EAGYVG-EDVENill 148 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPF-----------AI--------ADATT--------LT--EAGYVG-EDVENILL 148 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCe-----------ee--------ccccc--------hh--hccccc-hhHHHHHH
Confidence 599999999999999999999773321 00 00001 11 122221 33555665
Q ss_pred HHHhcCCCCCCCCCCceEEEEeCCCcCC--------------HHHHHHHHHHHhh
Q 018543 116 EMAKNRPIDTKGKRGFKVLVLNEVDKLS--------------REAQHSLRRTMEK 156 (354)
Q Consensus 116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~--------------~~~~~~Ll~~le~ 156 (354)
.+.+....+. ...++.||+|||+|.+. ...|++|++++|.
T Consensus 149 kLlqaadydV-~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 149 KLLQAADYDV-ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred HHHHHcccCH-HHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 5555444322 23466899999999883 3479999999985
No 290
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.87 E-value=6.7e-09 Score=89.01 Aligned_cols=146 Identities=19% Similarity=0.240 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
+.+.-.+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++.... .... .+ ...+.+.+++.
T Consensus 22 ~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~--~~~~----~~-----~~~i~~~~q~~ 87 (218)
T cd03266 22 DGVSFTVKPGEV--TGLLGPNGAGKTTTLRMLAG-LLEPDAGFATVDGFDVV--KEPA----EA-----RRRLGFVSDST 87 (218)
T ss_pred cceEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CcCCCCceEEECCEEcc--cCHH----HH-----HhhEEEecCCc
Confidence 333333444443 99999999999999999998 56677777777765432 0000 00 01122222221
Q ss_pred CCcchh----------------------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543 103 GFQDRY----------------------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKL 142 (354)
Q Consensus 103 ~~~~~~----------------------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l 142 (354)
...... .+.+.++.+.- .....+++ ..+++++++||+ ..|
T Consensus 88 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 167 (218)
T cd03266 88 GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL 167 (218)
T ss_pred ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCC
Confidence 111100 11222222100 00001111 157899999998 789
Q ss_pred CHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 143 ~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
++.....+.+.+.+... +..+|+++++.+ ....+.+|+..
T Consensus 168 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~ 208 (218)
T cd03266 168 DVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVV 208 (218)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 99999999999977643 456666666654 33445555433
No 291
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.87 E-value=5.7e-09 Score=88.95 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~ 206 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIV 206 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 57899999998 88999999999999976543 455666666643 33444455433
No 292
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.86 E-value=3.1e-09 Score=87.59 Aligned_cols=101 Identities=24% Similarity=0.363 Sum_probs=55.3
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHH
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI 114 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~ 114 (354)
.+++|+||+|+|||++|.++++++...+.....+....+. . .+.... .. ....+.+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~------------~--------~l~~~~-~~---~~~~~~~ 103 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL------------D--------ELKQSR-SD---GSYEELL 103 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH------------H--------HHHCCH-CC---TTHCHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee------------c--------cccccc-cc---cchhhhc
Confidence 4599999999999999999999875433211111110000 0 000000 00 0122233
Q ss_pred HHHHhcCCCCCCCCCCceEEEEeCCCc--CCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543 115 KEMAKNRPIDTKGKRGFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCCNSS 170 (354)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~viiiDE~d~--l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 170 (354)
+.+. +..++||||+.. .+....+.|.++++..-.+..+|++||..
T Consensus 104 ~~l~-----------~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 104 KRLK-----------RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp HHHH-----------TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred Cccc-----------cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 3332 237899999854 45667778888886543345788888865
No 293
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=3.5e-09 Score=93.68 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=39.0
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l 234 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIM 234 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 57899999997 88999999999998876532 355666666544 345555665433
No 294
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=1.1e-08 Score=87.74 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=79.2
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF 104 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 104 (354)
+.-.+..|.. +.|.||+|+||||+++++++ +..++.+.+.+++.... .... .+ ...+.+.+++...
T Consensus 19 vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~--~~~~----~~-----~~~i~~~~q~~~~ 84 (220)
T cd03265 19 VSFRVRRGEI--FGLLGPNGAGKTTTIKMLTT-LLKPTSGRATVAGHDVV--REPR----EV-----RRRIGIVFQDLSV 84 (220)
T ss_pred eeEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecC--cChH----HH-----hhcEEEecCCccc
Confidence 3333444443 89999999999999999998 55677777777665332 0000 00 0011111111111
Q ss_pred cc----------------------hhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCH
Q 018543 105 QD----------------------RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (354)
Q Consensus 105 ~~----------------------~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (354)
.. ...+.++++.+.- ..+..+|+ ..+++++++||+ ..|++
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~ 164 (220)
T cd03265 85 DDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDP 164 (220)
T ss_pred cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCH
Confidence 10 0112222222210 11111221 157899999997 88999
Q ss_pred HHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 145 ~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.....+.+.+.+... +..+|+++++.+ ....+.+|+.+
T Consensus 165 ~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~ 204 (220)
T cd03265 165 QTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAI 204 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999998876533 345666666544 34455566533
No 295
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.86 E-value=3.9e-09 Score=89.10 Aligned_cols=144 Identities=22% Similarity=0.314 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc--------ccccccc
Q 018543 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID--------LELTTLS 90 (354)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 90 (354)
..+.+.+.-.+..|.+ +-+.||+||||||+.+.+|+ +..+..+.+.+++.... .|..... +.|.++.
T Consensus 16 ~~vl~~i~L~v~~GEf--vsilGpSGcGKSTLLriiAG-L~~p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEF--VAILGPSGCGKSTLLRLIAG-LEKPTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 3444555555666766 88999999999999999998 77888888888887553 3322211 1111111
Q ss_pred cCceeeeCCCCCCCcc---hhHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCH----H
Q 018543 91 SANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR----E 145 (354)
Q Consensus 91 ~~~~i~~~~~~~~~~~---~~~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~----~ 145 (354)
. ++.+.....+... ...+.+.++.+ ....|..+|+ ..+++++++||+ ..|+. .
T Consensus 91 ~--NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~ 168 (248)
T COG1116 91 D--NVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREE 168 (248)
T ss_pred h--hheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHH
Confidence 1 1122111111111 11344444332 2223333332 157899999996 55553 3
Q ss_pred HHHHHHHHHhhccCceeEEEEecCCC
Q 018543 146 AQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 146 ~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.|+.|+++.++. +..++++|++.+
T Consensus 169 lq~~l~~lw~~~--~~TvllVTHdi~ 192 (248)
T COG1116 169 LQDELLRLWEET--RKTVLLVTHDVD 192 (248)
T ss_pred HHHHHHHHHHhh--CCEEEEEeCCHH
Confidence 466677776663 367888888865
No 296
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.86 E-value=4.8e-09 Score=96.28 Aligned_cols=138 Identities=20% Similarity=0.309 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (354)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (354)
.+++.+.-.+..|.. +-+.||+|+||||++|.+.. .-.+..+.+.+|+.+.. .|+.-.-+.|+.|.|
T Consensus 350 pil~~isF~l~~G~~--lgIIGPSgSGKSTLaR~lvG-~w~p~~G~VRLDga~l~----------qWd~e~lG~hiGYLP 416 (580)
T COG4618 350 PILKGISFALQAGEA--LGIIGPSGSGKSTLARLLVG-IWPPTSGSVRLDGADLR----------QWDREQLGRHIGYLP 416 (580)
T ss_pred cceecceeEecCCce--EEEECCCCccHHHHHHHHHc-ccccCCCcEEecchhhh----------cCCHHHhccccCcCc
Confidence 344555555555654 88999999999999999987 66788888999987766 555556678899999
Q ss_pred CCCCCcchhHHHHHHHHHHhcCCC--------------------------------CCCC------------CCCceEEE
Q 018543 100 SDAGFQDRYVVQEVIKEMAKNRPI--------------------------------DTKG------------KRGFKVLV 135 (354)
Q Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~~~--------------------------------~~~~------------~~~~~vii 135 (354)
++....+.. +.+.+..+...... .+++ -+++++||
T Consensus 417 QdVeLF~GT-IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 417 QDVELFDGT-IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred ccceecCCc-HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence 887765532 33333333211110 1111 16889999
Q ss_pred EeCC-CcCCHHHHHHHHHHHhhc-cCceeEEEEecCCC
Q 018543 136 LNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSSS 171 (354)
Q Consensus 136 iDE~-d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~ 171 (354)
+||+ .+|+.+...+|...+... ...+.+|++++.++
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs 533 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 9999 578888888888888543 45677888888765
No 297
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=5.9e-09 Score=90.32 Aligned_cols=150 Identities=19% Similarity=0.260 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.......+.. . ......+.+.+++.
T Consensus 22 ~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~-----~--~~~~~~i~~~~q~~ 91 (233)
T cd03258 22 KDVSLSVPKGEI--FGIIGRSGAGKSTLIRCING-LERPTSGSVLVDGTDLTLLSGKE-----L--RKARRRIGMIFQHF 91 (233)
T ss_pred ecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcccCCHHH-----H--HHHHhheEEEccCc
Confidence 333333444544 99999999999999999998 56777788877776433100000 0 00000112222221
Q ss_pred CCcchh----------------------HHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543 103 GFQDRY----------------------VVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (354)
Q Consensus 103 ~~~~~~----------------------~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (354)
...... .+.+.++.+. ...+..+++ ..+++++++||+ ..|
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~L 171 (233)
T cd03258 92 NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171 (233)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcC
Confidence 111100 1112222111 001111121 157899999998 789
Q ss_pred CHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 143 ~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
++.....+.+.+.+... +..+|+++++.+ ....+.+|+.+
T Consensus 172 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~ 213 (233)
T cd03258 172 DPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAV 213 (233)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999976532 455666666543 34555566543
No 298
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.85 E-value=1.8e-08 Score=86.08 Aligned_cols=142 Identities=16% Similarity=0.212 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
+.+.-.+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++..... ... ...+.+.++..
T Consensus 28 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~i~~--~~~-----------~~~i~~~~q~~ 91 (214)
T PRK13543 28 GPLDFHVDAGEA--LLVQGDNGAGKTTLLRVLAG-LLHVESGQIQIDGKTATR--GDR-----------SRFMAYLGHLP 91 (214)
T ss_pred ecceEEECCCCE--EEEEcCCCCCHHHHHHHHhC-CCCCCCeeEEECCEEccc--hhh-----------hhceEEeecCc
Confidence 333334444443 99999999999999999998 567777877777654320 000 00111111111
Q ss_pred CCc-------------------chhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHH
Q 018543 103 GFQ-------------------DRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSRE 145 (354)
Q Consensus 103 ~~~-------------------~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~ 145 (354)
... ....+++.++.+.- .....+++ ..+++++++||+ ..|+..
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (214)
T PRK13543 92 GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171 (214)
T ss_pred ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 100 00112222222210 00001111 147899999997 889999
Q ss_pred HHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhc
Q 018543 146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC 181 (354)
Q Consensus 146 ~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~ 181 (354)
....+.+.+.+... +..+|+++++. ...+.+.+|.
T Consensus 172 ~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i 207 (214)
T PRK13543 172 GITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRM 207 (214)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceE
Confidence 99999998865433 34555555554 3334444554
No 299
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=1.4e-08 Score=87.16 Aligned_cols=150 Identities=18% Similarity=0.256 Sum_probs=78.5
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------e
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------H 94 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 94 (354)
+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... .... .+..+.+.. .
T Consensus 23 vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~--~~~~----~i~~v~q~~~~~~~~tv~e~ 93 (220)
T cd03293 23 ISLSVEEGEF--VALVGPSGCGKSTLLRIIAG-LERPTSGEVLVDGEPVT--GPGP----DRGYVFQQDALLPWLTVLDN 93 (220)
T ss_pred eeEEEeCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECc--cccC----cEEEEecccccccCCCHHHH
Confidence 3333444544 99999999999999999998 55677777777665432 0000 011110000 0
Q ss_pred eeeCCCCCCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHH
Q 018543 95 VELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (354)
Q Consensus 95 i~~~~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~ 153 (354)
+.+.....+... ...+.+.++.+. ...+..+|+ ..+++++++||+ ..|++.....+.+.
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~ 173 (220)
T cd03293 94 VALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEE 173 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence 000000000000 001222222211 111111221 147899999998 78999999999998
Q ss_pred Hhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543 154 MEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 154 le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+.+.. .+..+|+++++.+ ....+.+|+.++
T Consensus 174 l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 205 (220)
T cd03293 174 LLDIWRETGKTVLLVTHDID-EAVFLADRVVVL 205 (220)
T ss_pred HHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 87652 2456666666654 234444554433
No 300
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.84 E-value=9e-09 Score=87.89 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++..+..+.+.+.+... +..+|+++++.+ ..+.+.+|+.++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l 208 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFM 208 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 57899999997 78999999999999976543 345666665543 334455554433
No 301
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.84 E-value=1.1e-08 Score=88.42 Aligned_cols=147 Identities=15% Similarity=0.229 Sum_probs=81.0
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF 104 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 104 (354)
+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.......+.... ...+.+.+++...
T Consensus 19 vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~---------~~~i~~~~q~~~~ 86 (230)
T TIGR03410 19 VSLEVPKGEV--TCVLGRNGVGKTTLLKTLMG-LLPVKSGSIRLDGEDITKLPPHERA---------RAGIAYVPQGREI 86 (230)
T ss_pred eeeEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCCHHHHH---------HhCeEEeccCCcc
Confidence 3333444544 99999999999999999998 5677778777776543200000000 0011111111111
Q ss_pred cc-------------------hhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543 105 QD-------------------RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (354)
Q Consensus 105 ~~-------------------~~~i~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (354)
.. .....+.++.+. ......+++ ..+++++++||+ ..|++..
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~ 166 (230)
T TIGR03410 87 FPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSI 166 (230)
T ss_pred cCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 00 011122222221 111111221 147899999998 8899999
Q ss_pred HHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 147 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
...+.+.+.+... +..+|+++++.+ ..+.+.+|+.++
T Consensus 167 ~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l 205 (230)
T TIGR03410 167 IKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVM 205 (230)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999977543 455666666654 445556665443
No 302
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=9.4e-09 Score=87.76 Aligned_cols=146 Identities=18% Similarity=0.303 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..... .+..+ ..+.+.+++.
T Consensus 17 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~-~~~~~-----------~~i~~v~q~~ 81 (213)
T cd03259 17 DDLSLTVEPGEF--LALLGPSGCGKTTLLRLIAG-LERPDSGEILIDGRDVTG-VPPER-----------RNIGMVFQDY 81 (213)
T ss_pred cceeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcCc-Cchhh-----------ccEEEEcCch
Confidence 333334444544 99999999999999999998 557777877777654320 00000 0111111111
Q ss_pred CCcc----------------------hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543 103 GFQD----------------------RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (354)
Q Consensus 103 ~~~~----------------------~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (354)
.... ...+.++++.+. ...+..+|+ ..+++++++||+ ..|
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L 161 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 1000 001222222211 011111221 257899999998 789
Q ss_pred CHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 143 ~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
++.....+.+.+.+... +..+|+++++.+ ....+.+|+..+
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l 204 (213)
T cd03259 162 DAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVM 204 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 99999999999976532 445666666543 334555655443
No 303
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.83 E-value=1.4e-08 Score=86.67 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=37.6
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+++++++||+ ..|++..+..+.+.+.+... +..+|+++++.+ ....+.+|+.
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~ 202 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIA 202 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEE
Confidence 47899999997 88999999999998876532 456677666653 3344445543
No 304
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.83 E-value=1.3e-08 Score=94.32 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=82.5
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc-ccccccccccCc----------
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELTTLSSAN---------- 93 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------- 93 (354)
+.-.++.|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... ....+ ....+..+.+..
T Consensus 22 vs~~i~~Gei--v~liGpNGaGKSTLLk~LaG-ll~p~sG~I~l~G~~i~--~~~~~~~~~~ig~v~q~~~l~~~~tv~e 96 (402)
T PRK09536 22 VDLSVREGSL--VGLVGPNGAGKTTLLRAING-TLTPTAGTVLVAGDDVE--ALSARAASRRVASVPQDTSLSFEFDVRQ 96 (402)
T ss_pred eEEEECCCCE--EEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEEcC--cCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence 3333444544 89999999999999999998 66788888888776443 10000 000011111100
Q ss_pred eeeeCCC----CCC---CcchhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHH
Q 018543 94 HVELSPS----DAG---FQDRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (354)
Q Consensus 94 ~i~~~~~----~~~---~~~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (354)
.+.+... ..+ ..+...+++.++.+.- .....+|+ ..+++++++||+ ..|+...+.
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~ 176 (402)
T PRK09536 97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV 176 (402)
T ss_pred HHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 0000000 000 0011123333332211 11111221 157899999997 889999999
Q ss_pred HHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543 149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 149 ~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++.|.+.......|++++|.......+.+|+.+
T Consensus 177 ~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~ 211 (402)
T PRK09536 177 RTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVL 211 (402)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99998877643333444455555555666777643
No 305
>PHA00729 NTP-binding motif containing protein
Probab=98.83 E-value=3.4e-08 Score=83.33 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=26.1
Q ss_pred cccHHHhhhcceeeecCCCHHHHHHHHHH
Q 018543 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEF 200 (354)
Q Consensus 172 ~l~~~l~sR~~~i~~~~~~~~~~~~~L~~ 200 (354)
.+.++++|||..+.|.+++++++...|+.
T Consensus 110 ~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 110 KIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred HHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 57788999999999999999999998875
No 306
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=1e-08 Score=88.92 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l 210 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVL 210 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEE
Confidence 47899999998 78999999999999876533 455666666654 334555665443
No 307
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.83 E-value=2.1e-08 Score=87.02 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=40.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+.. .+..+|+++++.+.+ +. .+|+.++
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~-~~-~d~i~~l 205 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI-EA-DDRLVVL 205 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH-hh-CCEEEEE
Confidence 57899999997 7899999999999987654 245677777777655 33 5665443
No 308
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.82 E-value=1.4e-08 Score=87.36 Aligned_cols=152 Identities=14% Similarity=0.224 Sum_probs=78.5
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------eeee
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------HVEL 97 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~ 97 (354)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.......+.......+..+.+.. .+.+
T Consensus 22 ~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 98 (222)
T cd03224 22 TVPEGEI--VALLGRNGAGKTTLLKTIMG-LLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLL 98 (222)
T ss_pred EEcCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHH
Confidence 3344443 99999999999999999998 556777777777654320000000000011111100 0000
Q ss_pred CCCCCC-CcchhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc
Q 018543 98 SPSDAG-FQDRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY 157 (354)
Q Consensus 98 ~~~~~~-~~~~~~i~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~ 157 (354)
.....+ ......+.++++.+. ...+..+++ ..+++++++||+ ..|++.....+.+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (222)
T cd03224 99 GAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178 (222)
T ss_pred HhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 000000 000112223333321 111111221 247899999997 789999999999999765
Q ss_pred cC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 158 SA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 158 ~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.. +..+|+++++. .....+.+|+..
T Consensus 179 ~~~~~tiii~sH~~-~~~~~~~d~i~~ 204 (222)
T cd03224 179 RDEGVTILLVEQNA-RFALEIADRAYV 204 (222)
T ss_pred HHCCCEEEEEeCCH-HHHHHhccEEEE
Confidence 43 44555555554 334455555533
No 309
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.82 E-value=9.9e-09 Score=87.70 Aligned_cols=54 Identities=13% Similarity=0.324 Sum_probs=37.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++..+..+.+.+.+.. ....+|+++++.+ ....+.+|+.+
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~ 208 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIA 208 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 47899999998 7899999999999997753 3455666666543 33334444433
No 310
>PRK10908 cell division protein FtsE; Provisional
Probab=98.82 E-value=1.1e-08 Score=87.87 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=37.7
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+...+..+.+.+.+... +..+|+++++.+ ..+.+.+|+.++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 210 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTL 210 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 47899999997 88999999999998876533 455666666543 334444554333
No 311
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.81 E-value=1.5e-08 Score=86.02 Aligned_cols=150 Identities=16% Similarity=0.236 Sum_probs=80.1
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC-----------c
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA-----------N 93 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 93 (354)
+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... ....+. .+..+.+. +
T Consensus 19 v~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~~--~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 19 LSLDLYAGEI--IALTGKNGAGKTTLAKILAG-LIKESSGSILLNGKPIK--AKERRK--SIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred eeEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEhh--hHHhhc--ceEEEecChhhhhhhccHHH
Confidence 3333444544 99999999999999999998 56777787777765432 000000 01111000 0
Q ss_pred eeeeCCCCCCCcchhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHh
Q 018543 94 HVELSPSDAGFQDRYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (354)
Q Consensus 94 ~i~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le 155 (354)
.+.+.....+ .....+.+.++.+.-. .+..+|+ ..+++++++||+ ..|++.....+.+.+.
T Consensus 92 ~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 170 (205)
T cd03226 92 ELLLGLKELD-AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170 (205)
T ss_pred HHhhhhhhcC-ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0000000000 0111233333332111 1111221 147899999998 8899999999999997
Q ss_pred hcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543 156 KYS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 156 ~~~-~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+.. .+..+|+++++.+ ....+.+|+.+
T Consensus 171 ~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 198 (205)
T cd03226 171 ELAAQGKAVIVITHDYE-FLAKVCDRVLL 198 (205)
T ss_pred HHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 763 3455666666544 33445555433
No 312
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.79 E-value=1.5e-08 Score=87.96 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=38.8
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+.. .+..+|++|++.+ ....+.+|+.+
T Consensus 160 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~ 215 (236)
T cd03219 160 TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTV 215 (236)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 47899999998 7899999999999997754 3455666666654 44455566543
No 313
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.6e-08 Score=92.67 Aligned_cols=48 Identities=27% Similarity=0.469 Sum_probs=40.8
Q ss_pred CCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
.|.|++||+.+++.+.-....|. |++++||||||||.+|..+.. ++.+
T Consensus 177 D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~-lLPp 224 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPG-LLPP 224 (490)
T ss_pred chhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcc-cCCC
Confidence 78999999999999987776553 499999999999999999887 4443
No 314
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.79 E-value=6.2e-09 Score=102.60 Aligned_cols=140 Identities=19% Similarity=0.295 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (354)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (354)
.+.+.+.-.++.|+. +.+.|++|+||||++|.+.+ ++.+..|.+.+|+.+.. .++...-.+.+.+.+
T Consensus 487 ~vL~~isL~I~~Ge~--vaIvG~SGsGKSTL~KLL~g-ly~p~~G~I~~dg~dl~----------~i~~~~lR~~ig~V~ 553 (709)
T COG2274 487 PVLEDLSLEIPPGEK--VAIVGRSGSGKSTLLKLLLG-LYKPQQGRILLDGVDLN----------DIDLASLRRQVGYVL 553 (709)
T ss_pred chhhceeEEeCCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEeHH----------hcCHHHHHhheeEEc
Confidence 355555555666655 99999999999999999998 88999999999987655 111111112233333
Q ss_pred CCCCCcch------------hHHHHHHHHH--------HhcCCC-----------CCCC------------CCCceEEEE
Q 018543 100 SDAGFQDR------------YVVQEVIKEM--------AKNRPI-----------DTKG------------KRGFKVLVL 136 (354)
Q Consensus 100 ~~~~~~~~------------~~i~~~~~~~--------~~~~~~-----------~~~~------------~~~~~viii 136 (354)
++.-...+ ...++++..+ -...|. ++|+ ..+++|+++
T Consensus 554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 33221110 0011111111 000111 1221 158899999
Q ss_pred eCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 137 DE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
||+ ..|+++....+.+.|.+...+..+|++|++++.
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~t 670 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST 670 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchH
Confidence 998 789999999999999888878889999998754
No 315
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.79 E-value=3.6e-08 Score=84.79 Aligned_cols=130 Identities=16% Similarity=0.267 Sum_probs=74.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc----------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD---------- 106 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------- 106 (354)
+.|.||+|+||||+++.+++ +..+..+.+.+++.... ... . ..+.+.+++.....
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~~~~~--~~~-~-----------~~~~~~~q~~~~~~~~t~~~~~~~ 93 (223)
T TIGR03740 29 YGLLGPNGAGKSTLLKMITG-ILRPTSGEIIFDGHPWT--RKD-L-----------HKIGSLIESPPLYENLTARENLKV 93 (223)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecc--ccc-c-----------ccEEEEcCCCCccccCCHHHHHHH
Confidence 89999999999999999998 55677777777664322 000 0 01111111111100
Q ss_pred --------hhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-
Q 018543 107 --------RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA- 159 (354)
Q Consensus 107 --------~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~- 159 (354)
...+.++++.+.- ..+..+++ ..+++++++||+ ..|+......+.+.+.+...
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~ 173 (223)
T TIGR03740 94 HTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173 (223)
T ss_pred HHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC
Confidence 0112222222110 00111121 147899999997 88999999999999977543
Q ss_pred ceeEEEEecCCCcccHHHhhhcc
Q 018543 160 SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 160 ~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
+..+|+++++.+ ..+.+.+|+.
T Consensus 174 ~~tiii~sH~~~-~~~~~~d~i~ 195 (223)
T TIGR03740 174 GITVILSSHILS-EVQQLADHIG 195 (223)
T ss_pred CCEEEEEcCCHH-HHHHhcCEEE
Confidence 345555555543 4455566653
No 316
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.78 E-value=6.1e-08 Score=96.32 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=53.2
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhcc-------------CceeEEEEecCCC-------------cccHHHhhhcce
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS-------------KVTEAIRSRCLN 183 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~-------------~l~~~l~sR~~~ 183 (354)
...+++|||++.|++..|.+|+..||+.. ..+.+|.++|... .+++++.||+..
T Consensus 557 dgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDL 636 (915)
T PTZ00111 557 NGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDL 636 (915)
T ss_pred CCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcE
Confidence 44699999999999999999999998642 4567777777532 588999999954
Q ss_pred --eeecCCCHHHHHHHHHHHH
Q 018543 184 --IRINSPTEEQIVKVLEFIA 202 (354)
Q Consensus 184 --i~~~~~~~~~~~~~L~~~~ 202 (354)
+-+..++.+.=..+..+++
T Consensus 637 If~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 637 IYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred EEEecCCCChHHHHHHHHHHH
Confidence 4456666555444444443
No 317
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.78 E-value=2.9e-08 Score=83.63 Aligned_cols=137 Identities=17% Similarity=0.263 Sum_probs=80.9
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF 104 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 104 (354)
+.-.++.|.+ +.+.||+|+||||+...++. +..++.+.+.+++.+.. ..+.. +. ..-...++.+..+.+..
T Consensus 24 v~l~i~~Ge~--vaI~GpSGSGKSTLLniig~-ld~pt~G~v~i~g~d~~--~l~~~---~~-~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 24 VNLEIEAGEF--VAIVGPSGSGKSTLLNLLGG-LDKPTSGEVLINGKDLT--KLSEK---EL-AKLRRKKIGFVFQNFNL 94 (226)
T ss_pred ceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEcC--cCCHH---HH-HHHHHHhEEEECccCCC
Confidence 3334555665 89999999999999999987 77788888888875443 11100 00 00112234444444333
Q ss_pred cchhHHHHHH----------------------HHHH-----h-cCCCCCCC------------CCCceEEEEeCC-CcCC
Q 018543 105 QDRYVVQEVI----------------------KEMA-----K-NRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (354)
Q Consensus 105 ~~~~~i~~~~----------------------~~~~-----~-~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (354)
.+..++.+.+ +.+. . ..|..+|+ ..++++|+-||+ ..|+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD 174 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCC
Confidence 3222222222 1110 0 11222332 157899999998 7899
Q ss_pred HHHHHHHHHHHhhcc--CceeEEEEecCC
Q 018543 144 REAQHSLRRTMEKYS--ASCRLILCCNSS 170 (354)
Q Consensus 144 ~~~~~~Ll~~le~~~--~~~~~Il~~~~~ 170 (354)
....+.++..+.+.. .+..+|++|+++
T Consensus 175 ~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 175 SKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 888888888886653 245677777764
No 318
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=1.9e-08 Score=92.01 Aligned_cols=146 Identities=20% Similarity=0.272 Sum_probs=80.6
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 107 (354)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... ..... +... ....+.+.+++......
T Consensus 27 ~i~~Gei--~~iiG~nGsGKSTLlk~L~G-l~~p~~G~I~~~g~~i~--~~~~~---~~~~--~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 27 HIPAGEI--FGVIGASGAGKSTLIRCINL-LERPTSGRVLVDGQDLT--ALSEK---ELRK--ARRQIGMIFQHFNLLSS 96 (343)
T ss_pred EEcCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECC--cCCHH---HHHH--HhcCEEEEeCCCccCCC
Confidence 3444544 89999999999999999998 66777788877775432 10000 0000 00112222221111110
Q ss_pred ----------------------hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543 108 ----------------------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (354)
Q Consensus 108 ----------------------~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (354)
..+.+.++.+. ...+..+|+ ..+++++++||+ ..|++...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 01222222211 011111221 157899999998 78999999
Q ss_pred HHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 148 ~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
..+++.+.+... +..+|++|++.+ ....+.+|+.++
T Consensus 177 ~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l 214 (343)
T PRK11153 177 RSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVI 214 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999876532 455666666654 445566665443
No 319
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.78 E-value=5.6e-08 Score=79.46 Aligned_cols=121 Identities=20% Similarity=0.267 Sum_probs=71.6
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY 108 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (354)
+..|.. +.+.||+|+||||+++.+++ +..+..+.+.+++. ..+.+.+++..... .
T Consensus 24 i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~~---------------------~~i~~~~q~~~~~~-~ 78 (166)
T cd03223 24 IKPGDR--LLITGPSGTGKSSLFRALAG-LWPWGSGRIGMPEG---------------------EDLLFLPQRPYLPL-G 78 (166)
T ss_pred ECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCC---------------------ceEEEECCCCcccc-c
Confidence 344444 99999999999999999998 45666666555431 01222222211111 1
Q ss_pred HHHHHHHHHHhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543 109 VVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (354)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 175 (354)
++.+.+... ....+++ ..+++++++||+ ..|+...+..+.+.+.+. ...+|+++++.+ +.
T Consensus 79 tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~-~~- 151 (166)
T cd03223 79 TLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS-LW- 151 (166)
T ss_pred cHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh-HH-
Confidence 222222110 0111110 246799999998 789999999999999875 356777777754 32
Q ss_pred HHhhhc
Q 018543 176 AIRSRC 181 (354)
Q Consensus 176 ~l~sR~ 181 (354)
.+.+|+
T Consensus 152 ~~~d~i 157 (166)
T cd03223 152 KFHDRV 157 (166)
T ss_pred hhCCEE
Confidence 354544
No 320
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=3.3e-08 Score=80.10 Aligned_cols=113 Identities=18% Similarity=0.285 Sum_probs=64.8
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 115 (354)
.+.|.||+|+||||+++++++. ..+..+.+.+++.... ..........+.+.++ ......-+-.
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~-~~~~~G~i~~~~~~~~----------~~~~~~~~~~i~~~~q---lS~G~~~r~~-- 90 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGL-LKPTSGEILIDGKDIA----------KLPLEELRRRIGYVPQ---LSGGQRQRVA-- 90 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCEEcc----------cCCHHHHHhceEEEee---CCHHHHHHHH--
Confidence 3999999999999999999984 4556666666654322 0000000112233222 1111111111
Q ss_pred HHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCc-eeEEEEecCCC
Q 018543 116 EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSS 171 (354)
Q Consensus 116 ~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~ 171 (354)
++... ..+++++++||+ ..++......+.+.+.+.... ..+++++++.+
T Consensus 91 -l~~~l------~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 91 -LARAL------LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred -HHHHH------hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 11111 124589999998 689999999999988765433 45555555543
No 321
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=3.5e-08 Score=86.52 Aligned_cols=150 Identities=14% Similarity=0.226 Sum_probs=80.4
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ce
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NH 94 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 94 (354)
+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... ..... +..+.+. +.
T Consensus 20 vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~----~~~v~q~~~~~~~~tv~e~ 90 (255)
T PRK11248 20 INLTLESGEL--LVVLGPSGCGKTTLLNLIAG-FVPYQHGSITLDGKPVE--GPGAE----RGVVFQNEGLLPWRNVQDN 90 (255)
T ss_pred eeEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECC--CCCCc----EEEEeCCCccCCCCcHHHH
Confidence 3333444544 99999999999999999998 56777787777765432 11100 0000000 00
Q ss_pred eeeCCCCCCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHH
Q 018543 95 VELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (354)
Q Consensus 95 i~~~~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~ 153 (354)
+.+.....+... ...+.+.++.+. ...+..+|+ ..+++++++||+ ..|++.....+.+.
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 170 (255)
T PRK11248 91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170 (255)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 000000000000 011233333221 111111221 147899999998 78999999999999
Q ss_pred Hhhc-c-CceeEEEEecCCCcccHHHhhhccee
Q 018543 154 MEKY-S-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 154 le~~-~-~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
|.+. . .+..+|++|++.+ ....+.+|..++
T Consensus 171 L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l 202 (255)
T PRK11248 171 LLKLWQETGKQVLLITHDIE-EAVFMATELVLL 202 (255)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 8765 2 2456666666654 334455554333
No 322
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.78 E-value=5.2e-08 Score=84.87 Aligned_cols=55 Identities=9% Similarity=0.193 Sum_probs=38.6
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.. ....+.+|+.++
T Consensus 132 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l 189 (246)
T cd03237 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVF 189 (246)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 57899999998 78999999988888876532 455666666543 445566665443
No 323
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.78 E-value=2e-08 Score=91.88 Aligned_cols=145 Identities=17% Similarity=0.275 Sum_probs=81.6
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 107 (354)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+. ..... ..... ....+.+.++.......
T Consensus 15 ~i~~Gei--~~l~G~sGsGKSTLLr~L~G-l~~p~~G~I~i~G~~i~--~~~~~---~~~~~-rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 15 AIAKGEI--FVIMGLSGSGKSTTVRMLNR-LIEPTAGQIFIDGENIM--KQSPV---ELREV-RRKKIGMVFQQFALFPH 85 (363)
T ss_pred EEcCCCE--EEEECCCCChHHHHHHHHhC-CCCCCceEEEECCEECC--cCCHH---HHHHH-HhCcEEEEECCCcCCCC
Confidence 3444554 99999999999999999998 66788888888886554 11100 00000 01122222222222211
Q ss_pred hH----------------------HHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543 108 YV----------------------VQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (354)
Q Consensus 108 ~~----------------------i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (354)
.+ +.++++.+ ....+..+|+ ..+++++++||+ ..|++...
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11 12222211 1111111221 157899999997 78999998
Q ss_pred HHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcc
Q 018543 148 HSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 148 ~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
..+.+.+.+.. .+..+|++|++.+.. ..+.+|+.
T Consensus 166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea-~~~~drI~ 201 (363)
T TIGR01186 166 DSMQDELKKLQATLQKTIVFITHDLDEA-IRIGDRIV 201 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence 88888886543 245677777665433 44556654
No 324
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.77 E-value=6.9e-09 Score=86.07 Aligned_cols=135 Identities=15% Similarity=0.235 Sum_probs=72.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccc----c---CceeeeCCCCCCCcchhH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS----S---ANHVELSPSDAGFQDRYV 109 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~i~~~~~~~~~~~~~~ 109 (354)
+.|.||+|+||||+++.+++ +..++.+.+.+++.......+.... ..+..+. . ...+.-.+... ....
T Consensus 28 ~~l~G~nGsGKStLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~~~~-~~i~~~~q~l~~~gl~~~~~~~~~~L--S~G~- 102 (180)
T cd03214 28 VGILGPNGAGKSTLLKTLAG-LLKPSSGEILLDGKDLASLSPKELA-RKIAYVPQALELLGLAHLADRPFNEL--SGGE- 102 (180)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCcCCHHHHH-HHHhHHHHHHHHcCCHhHhcCCcccC--CHHH-
Confidence 99999999999999999998 5566777777766533200000000 0000000 0 00000000000 0000
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcceee
Q 018543 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
.+. +. ++... ..+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.++.
T Consensus 103 ~qr-l~-laral------~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~ 172 (180)
T cd03214 103 RQR-VL-LARAL------AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLK 172 (180)
T ss_pred HHH-HH-HHHHH------hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 000 00 11100 246689999998 78999999999999977644 455666666554 3345556654443
No 325
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.77 E-value=2.4e-08 Score=87.79 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=38.2
Q ss_pred CceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+++++++||+ ..|++.....+.+.+.+.. .+..+|+++++. .....+.+|+..+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l 214 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLL 214 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEE
Confidence 6899999997 7899999999999887654 234556665554 3445566665443
No 326
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=2.2e-08 Score=85.39 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=77.0
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeCCC-CCCC
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSPS-DAGF 104 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~-~~~~ 104 (354)
.+.|.||+|+||||+++++++ +..+..+.+.+++.......+. +. .+..+.+. +.+.+... ....
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~g-l~~~~~G~i~~~g~~~~~~~~~-~~--~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 101 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAG-FETPQSGRVLINGVDVTAAPPA-DR--PVSMLFQENNLFAHLTVEQNVGLGLSPGLKL 101 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCcCCHh-Hc--cEEEEecccccCCCCcHHHHHhcccccccCc
Confidence 399999999999999999998 5567778777776543200000 00 01111100 01111000 0000
Q ss_pred --cchhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--cee
Q 018543 105 --QDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCR 162 (354)
Q Consensus 105 --~~~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~ 162 (354)
.....+.+.++.+. ...+..+++ ..+++++++||+ ..|+...+..+.+.+.+... ...
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 181 (211)
T cd03298 102 TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT 181 (211)
T ss_pred cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 00112333333321 111112221 157899999998 78999999999999976532 345
Q ss_pred EEEEecCCCcccHHHhhhccee
Q 018543 163 LILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 163 ~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+|+++++.+ ..+.+.+|+.++
T Consensus 182 ii~~sH~~~-~~~~~~d~i~~l 202 (211)
T cd03298 182 VLMVTHQPE-DAKRLAQRVVFL 202 (211)
T ss_pred EEEEecCHH-HHHhhhCEEEEE
Confidence 566555543 334455665444
No 327
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.77 E-value=5.9e-07 Score=85.45 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=76.8
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCC
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSP 189 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~ 189 (354)
+..+++|||++.|+...|..|++.+++.. .++++|++|+... .+.+.+..|+. .+.+||+
T Consensus 233 ~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppL 312 (441)
T PRK10365 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSL 312 (441)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCCh
Confidence 45689999999999999999999997632 2356777776542 34455555654 4666666
Q ss_pred CH--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543 190 TE--EQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ 238 (354)
Q Consensus 190 ~~--~~~~~~L~~~~~----~~~---~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~ 238 (354)
.. +++.......+. +.+ ..+++++++.+..+. .||+|++.+.++.++..
T Consensus 313 reR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 313 RQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred hhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 42 344444444333 223 358999999999977 99999999999987654
No 328
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.76 E-value=2.3e-08 Score=91.54 Aligned_cols=132 Identities=15% Similarity=0.226 Sum_probs=79.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH-------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV------- 109 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------- 109 (354)
+.|.||+|+||||+.+++++ +..++.+.+.+++..+....+. ...+.+.+++.......+
T Consensus 33 ~~l~GpsGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~~~~~~------------~r~ig~v~Q~~~lfp~~tv~eNi~~ 99 (353)
T TIGR03265 33 VCLLGPSGCGKTTLLRIIAG-LERQTAGTIYQGGRDITRLPPQ------------KRDYGIVFQSYALFPNLTVADNIAY 99 (353)
T ss_pred EEEECCCCCCHHHHHHHHHC-CCCCCceEEEECCEECCCCCHH------------HCCEEEEeCCcccCCCCcHHHHHHH
Confidence 89999999999999999998 6778888888888755310000 111233333322222111
Q ss_pred ---------------HHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 110 ---------------VQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 110 ---------------i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
+.++++.+. ...+..+++ ..+++++++||+ ..|+......++..+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 100 GLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQ 179 (353)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 222222211 111111221 147899999997 78999998888888866
Q ss_pred ccC--ceeEEEEecCCCcccHHHhhhcc
Q 018543 157 YSA--SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 157 ~~~--~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
... +..+|++|++.+ ....+.+|+.
T Consensus 180 l~~~~~~tvi~vTHd~~-ea~~l~d~i~ 206 (353)
T TIGR03265 180 LQRRLGVTTIMVTHDQE-EALSMADRIV 206 (353)
T ss_pred HHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 432 456777766654 3345566654
No 329
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=2.2e-08 Score=87.29 Aligned_cols=55 Identities=9% Similarity=0.173 Sum_probs=39.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l 209 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIM 209 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 57899999998 78999999999998877532 455666666654 334555665433
No 330
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.76 E-value=2.6e-08 Score=90.61 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=83.9
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
+.+.-.+..|.. +.|.||+|+||||++++++. +..++.+.+.+++.... ..... +... ....+.+.+++.
T Consensus 22 ~~vsl~i~~Gei--~gIiG~sGaGKSTLlr~I~g-l~~p~~G~I~i~G~~i~--~~~~~---~l~~--~r~~Ig~v~Q~~ 91 (343)
T TIGR02314 22 NNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNL-LERPTSGSVIVDGQDLT--TLSNS---ELTK--ARRQIGMIFQHF 91 (343)
T ss_pred eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECC--cCCHH---HHHH--HhcCEEEEECCc
Confidence 334434455544 89999999999999999998 67888888888876543 10000 0000 001122222221
Q ss_pred CCcch----------------------hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543 103 GFQDR----------------------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (354)
Q Consensus 103 ~~~~~----------------------~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (354)
..... ..+.++++.+. ...+..+|+ ..+++++++||+ ..|
T Consensus 92 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~L 171 (343)
T TIGR02314 92 NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSAL 171 (343)
T ss_pred cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 11110 01222222211 011111221 147899999998 789
Q ss_pred CHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 143 ~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
++.....+++.+.+... +..+|++|++. .....+.+|+.+
T Consensus 172 D~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~v 213 (343)
T TIGR02314 172 DPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAV 213 (343)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 99999999998877543 45566666554 444566666643
No 331
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=2.2e-08 Score=91.84 Aligned_cols=140 Identities=13% Similarity=0.234 Sum_probs=82.1
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 107 (354)
.+..|.. +.|.||+|+||||+.+++++ +..++.+.+.+++..+....+.. ..+.+.+++......
T Consensus 26 ~i~~Ge~--~~llG~sGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~~~~~~~------------r~ig~v~Q~~~lfp~ 90 (356)
T PRK11650 26 DVADGEF--IVLVGPSGCGKSTLLRMVAG-LERITSGEIWIGGRVVNELEPAD------------RDIAMVFQNYALYPH 90 (356)
T ss_pred EEcCCCE--EEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHH------------CCEEEEeCCccccCC
Confidence 3444543 88999999999999999998 67888888888887553100000 112222222211111
Q ss_pred h----------------------HHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543 108 Y----------------------VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (354)
Q Consensus 108 ~----------------------~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (354)
. .+.+.++.+ ....+..+|+ ..+++++++||+ ..|+....
T Consensus 91 ~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r 170 (356)
T PRK11650 91 MSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR 170 (356)
T ss_pred CCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 122222221 1111112221 257899999997 78999999
Q ss_pred HHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 148 ~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
..+++.+.+... +..+|++|++... ...+.+|+.+
T Consensus 171 ~~l~~~l~~l~~~~g~tii~vTHd~~e-a~~l~D~i~v 207 (356)
T PRK11650 171 VQMRLEIQRLHRRLKTTSLYVTHDQVE-AMTLADRVVV 207 (356)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 988888866432 4567777776543 3455566543
No 332
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=2.6e-08 Score=86.36 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=40.8
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+......+|+++++.+.+ +. .+|+.++
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~v~~l 209 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTI-EN-ADRIVVL 209 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-hh-CCEEEEe
Confidence 47899999997 8899999999999998765556677777776554 33 5665444
No 333
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=2.6e-08 Score=86.66 Aligned_cols=152 Identities=17% Similarity=0.242 Sum_probs=79.7
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ce
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NH 94 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 94 (354)
+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++........ .+. .+..+.+. ++
T Consensus 21 vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~-~~~--~i~~v~q~~~~~~~~tv~e~ 94 (239)
T cd03296 21 VSLDIPSGEL--VALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPV-QER--NVGFVFQHYALFRHMTVFDN 94 (239)
T ss_pred eeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCCc-ccc--ceEEEecCCcccCCCCHHHH
Confidence 3333444544 99999999999999999998 566777877777654320000 000 01111110 00
Q ss_pred eeeCCCCCCC----cc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHH
Q 018543 95 VELSPSDAGF----QD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (354)
Q Consensus 95 i~~~~~~~~~----~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (354)
+.+.....+. .. ...+.+.++.+. ...+..+++ ..+++++++||+ ..|++.....
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (239)
T cd03296 95 VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 174 (239)
T ss_pred HhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 0000000000 00 001222222221 111111221 147899999997 7899999999
Q ss_pred HHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 150 Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+.+.+.+... +..+|+++++.+. ...+.+|+.+
T Consensus 175 l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~ 209 (239)
T cd03296 175 LRRWLRRLHDELHVTTVFVTHDQEE-ALEVADRVVV 209 (239)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 9999977532 4556676666542 3344455433
No 334
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.75 E-value=2.7e-08 Score=91.82 Aligned_cols=140 Identities=15% Similarity=0.217 Sum_probs=80.2
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 107 (354)
.+..|.. +.|.||+|+||||+++++++ +..++.+.+.+++..+....+. + ..+.+.+++......
T Consensus 25 ~i~~Ge~--~~l~G~nGsGKSTLL~~iaG-l~~p~~G~I~~~g~~i~~~~~~-~-----------~~i~~v~Q~~~l~~~ 89 (369)
T PRK11000 25 DIHEGEF--VVFVGPSGCGKSTLLRMIAG-LEDITSGDLFIGEKRMNDVPPA-E-----------RGVGMVFQSYALYPH 89 (369)
T ss_pred EEcCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHh-H-----------CCEEEEeCCcccCCC
Confidence 3444543 99999999999999999998 6677888888877654300000 0 112222222111110
Q ss_pred ----------------------hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543 108 ----------------------YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (354)
Q Consensus 108 ----------------------~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (354)
..+.+.++.+.- ..+..+|+ ..+++++++||+ ..|+....
T Consensus 90 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~ 169 (369)
T PRK11000 90 LSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169 (369)
T ss_pred CCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 012222222110 01111221 157899999997 78999999
Q ss_pred HHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 148 ~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
..+++.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus 170 ~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~v 206 (369)
T PRK11000 170 VQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVV 206 (369)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 988888876532 456777776654 33455566543
No 335
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.75 E-value=2.8e-08 Score=86.65 Aligned_cols=54 Identities=7% Similarity=0.190 Sum_probs=38.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.+
T Consensus 162 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~ 218 (243)
T TIGR02315 162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVG 218 (243)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEE
Confidence 57899999998 78999999999999977532 455666666654 33455565543
No 336
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.75 E-value=1e-07 Score=80.17 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=70.5
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc---------
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD--------- 106 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------- 106 (354)
.+.|.||+|+||||+++++++ +..+..+.+.+++.... .... ..+.+.++......
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~--~~~~------------~~~~~~~~~~~~~~~~tv~~~l~ 92 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAG-IMQPSSGNIYYKNCNIN--NIAK------------PYCTYIGHNLGLKLEMTVFENLK 92 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCcccC--hhhh------------hhEEeccCCcCCCccCCHHHHHH
Confidence 389999999999999999998 56777777777765432 0000 00111111111000
Q ss_pred --------hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc-cC
Q 018543 107 --------RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SA 159 (354)
Q Consensus 107 --------~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~-~~ 159 (354)
...+.+.++.+. ......+++ ..+++++++||+ ..+++.....+.+.+.+. ..
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~ 172 (195)
T PRK13541 93 FWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANS 172 (195)
T ss_pred HHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 011222222211 001111111 147899999998 789999999998888643 23
Q ss_pred ceeEEEEecCCCcc
Q 018543 160 SCRLILCCNSSSKV 173 (354)
Q Consensus 160 ~~~~Il~~~~~~~l 173 (354)
+..+|+++++.+.+
T Consensus 173 ~~tiii~sh~~~~i 186 (195)
T PRK13541 173 GGIVLLSSHLESSI 186 (195)
T ss_pred CCEEEEEeCCcccc
Confidence 46677777776543
No 337
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.75 E-value=1.4e-08 Score=88.15 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=38.5
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+..
T Consensus 170 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 226 (236)
T cd03267 170 HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLV 226 (236)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 47899999997 88999999999999977532 355666666543 44455555443
No 338
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.74 E-value=5.6e-08 Score=82.57 Aligned_cols=149 Identities=13% Similarity=0.168 Sum_probs=79.3
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeC
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELS 98 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~ 98 (354)
+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++.... .+..+. .+..+... +.+.+.
T Consensus 25 i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~--~~~~~~--~~~~~~~~~~~~~~~tv~~~l~~~ 97 (207)
T PRK13539 25 LAAGEA--LVLTGPNGSGKTTLLRLIAG-LLPPAAGTIKLDGGDID--DPDVAE--ACHYLGHRNAMKPALTVAENLEFW 97 (207)
T ss_pred EcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEeCc--chhhHh--hcEEecCCCcCCCCCcHHHHHHHH
Confidence 344443 89999999999999999998 55667777777664321 000000 00001000 000000
Q ss_pred CCCCCCcchhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc-cC
Q 018543 99 PSDAGFQDRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SA 159 (354)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~-~~ 159 (354)
....+ .....+.+.++.+.- .....+++ ..+++++++||+ ..++......+++.+.+. ..
T Consensus 98 ~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 98 AAFLG-GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred HHhcC-CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 00000 000112333332211 11111121 147899999997 789999999999998764 33
Q ss_pred ceeEEEEecCCCcccHHHhhhcceeeecCCC
Q 018543 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPT 190 (354)
Q Consensus 160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~ 190 (354)
...+|+++++.+.+.. ..++.+.+|+
T Consensus 177 ~~tiii~sH~~~~~~~-----~~~~~~~~~~ 202 (207)
T PRK13539 177 GGIVIAATHIPLGLPG-----ARELDLGPFA 202 (207)
T ss_pred CCEEEEEeCCchhhcc-----CcEEeecCcc
Confidence 4567777777665543 3345555554
No 339
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=3.1e-08 Score=85.54 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=39.8
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+...+..+|+++++.+.+ + ..+|+.++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~-~~d~i~~l 210 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-K-NADKILVL 210 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-h-hCCEEEEE
Confidence 57899999998 7899999999999997765556677777766543 3 24555433
No 340
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=2.7e-08 Score=88.18 Aligned_cols=148 Identities=21% Similarity=0.313 Sum_probs=82.3
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
.+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+. ....+ .. ...+.+.+++
T Consensus 21 l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~---~~-----~~~i~~v~q~ 87 (274)
T PRK13647 21 LKGLSLSIPEGSK--TALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVN--AENEK---WV-----RSKVGLVFQD 87 (274)
T ss_pred eeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCceEEEECCEECC--CCCHH---HH-----HhhEEEEecC
Confidence 3334444455544 99999999999999999998 66777888888776442 10000 00 0011111111
Q ss_pred C--------------------CCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-C
Q 018543 102 A--------------------GFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-D 140 (354)
Q Consensus 102 ~--------------------~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d 140 (354)
. +... ...+.+.++.+. ...+..+++ ..+++++++||+ .
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 88 PDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred hhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 1 0000 001222222211 011111221 157899999998 7
Q ss_pred cCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 141 ~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.|++..+..+++.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~ 210 (274)
T PRK13647 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIV 210 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 8999999999999976543 455666666544 34456666543
No 341
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=3.3e-08 Score=90.44 Aligned_cols=143 Identities=14% Similarity=0.211 Sum_probs=82.3
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF 104 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 104 (354)
+.-.++.|.. +.|.||+|+||||+++++++ +..++.+.+.+++..+....+. ...+.+.++++..
T Consensus 25 isl~i~~Ge~--~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~~~~~------------~r~ig~vfQ~~~l 89 (351)
T PRK11432 25 LNLTIKQGTM--VTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRSIQ------------QRDICMVFQSYAL 89 (351)
T ss_pred eEEEEcCCCE--EEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHH------------HCCEEEEeCCccc
Confidence 3333444544 99999999999999999998 6778888888888655310010 0112222222221
Q ss_pred cchh----------------------HHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCH
Q 018543 105 QDRY----------------------VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (354)
Q Consensus 105 ~~~~----------------------~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (354)
.... .+.+.++.+ ....+..+|+ ..+++++++||+ ..|+.
T Consensus 90 fp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~ 169 (351)
T PRK11432 90 FPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169 (351)
T ss_pred CCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 1111 112222211 1111112221 147899999997 78999
Q ss_pred HHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 145 ~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.....++..+.+... +..+|++|++.+. ...+.+|+.+
T Consensus 170 ~~r~~l~~~l~~l~~~~g~tii~vTHd~~e-~~~laD~i~v 209 (351)
T PRK11432 170 NLRRSMREKIRELQQQFNITSLYVTHDQSE-AFAVSDTVIV 209 (351)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEE
Confidence 988888888865432 4566666666543 3455666543
No 342
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.74 E-value=3.9e-08 Score=84.91 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=38.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ..+.+.+|+.++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 219 (228)
T cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVM 219 (228)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 47899999997 78999999999999976543 455666666654 334455555433
No 343
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=3.3e-08 Score=85.88 Aligned_cols=158 Identities=13% Similarity=0.136 Sum_probs=80.9
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc---------
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN--------- 93 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 93 (354)
+.+.-.++.|.. +.|.||+|+||||+++++++ +..+..+.+.+++...............+..+.+..
T Consensus 22 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (237)
T PRK11614 22 HEVSLHINQGEI--VTLIGANGAGKTTLLGTLCG-DPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98 (237)
T ss_pred eeeEEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence 333334445544 99999999999999999998 556777777777654320000000000011111100
Q ss_pred -eeeeCCCCCCCcc-hhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 94 -HVELSPSDAGFQD-RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 94 -~i~~~~~~~~~~~-~~~i~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
.+.+......... ...+.+.++.+. ...+..+++ ..+++++++||+ ..|+......+.+
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~ 178 (237)
T PRK11614 99 ENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFD 178 (237)
T ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence 0000000000000 011222222221 111111221 147899999997 8899999999999
Q ss_pred HHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 153 TMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 153 ~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 179 ~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 210 (237)
T PRK11614 179 TIEQLREQGMTIFLVEQNAN-QALKLADRGYVL 210 (237)
T ss_pred HHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEE
Confidence 8876533 455566655543 334556665443
No 344
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.73 E-value=2.7e-08 Score=84.43 Aligned_cols=43 Identities=7% Similarity=0.180 Sum_probs=34.0
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCC
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 171 (354)
.+++++++||+ ..|++..+..+.+.+.+... +..+|+++++..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 57899999998 78999999999999976533 456677777654
No 345
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.73 E-value=2.7e-08 Score=96.85 Aligned_cols=134 Identities=16% Similarity=0.250 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
.+.+.-.++.|+. +.+.||+|+||||+++.+++ ++.++.+.+.+++.+.. ++ ...-...+.+.+++
T Consensus 351 L~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~i~g~~i~----------~~-~~~lr~~i~~V~Q~ 416 (529)
T TIGR02868 351 LDGVSLDLPPGER--VAILGPSGSGKSTLLMLLTG-LLDPLQGEVTLDGVSVS----------SL-QDELRRRISVFAQD 416 (529)
T ss_pred eecceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhh----------hH-HHHHHhheEEEccC
Confidence 3334434444544 99999999999999999997 77888888888876543 11 10001122222222
Q ss_pred CCCc---------------chhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeC
Q 018543 102 AGFQ---------------DRYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNE 138 (354)
Q Consensus 102 ~~~~---------------~~~~i~~~~~~~-----~~~~~-----------~~~~~------------~~~~~viiiDE 138 (354)
.... ....+.+.++.. -...| ..+++ -.+++++++||
T Consensus 417 ~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE 496 (529)
T TIGR02868 417 AHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE 496 (529)
T ss_pred cccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1111 111222222221 00001 11221 15789999999
Q ss_pred C-CcCCHHHHHHHHHHHhhccCceeEEEEecC
Q 018543 139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (354)
Q Consensus 139 ~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 169 (354)
+ ..++++....+.+.+.+..++..+|++|++
T Consensus 497 ~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 497 PTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 8 779999999999999876666777777775
No 346
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.73 E-value=2.1e-06 Score=89.18 Aligned_cols=209 Identities=15% Similarity=0.192 Sum_probs=115.9
Q ss_pred CCcccccC-CCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 1 MLWVDKYR-PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 1 ~~w~ekyr-P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
|+-.-|+. |..-.+++-.+.+.+.|... ...+-++++||+|+||||++..++... . ...-+.++..+- .+.
T Consensus 1 ~~~~~k~~~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~-~-~~~w~~l~~~d~---~~~ 72 (903)
T PRK04841 1 MLIPSKLSRPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK-N-NLGWYSLDESDN---QPE 72 (903)
T ss_pred CCcccccCCCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC-C-CeEEEecCcccC---CHH
Confidence 44455665 55567788788777766532 233449999999999999998877532 1 110011111100 000
Q ss_pred ccccccccccccC--c----eeeeCCCCCCCcc-hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH-HHHHH
Q 018543 80 RNIDLELTTLSSA--N----HVELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QHSLR 151 (354)
Q Consensus 80 ~~~~~~~~~~~~~--~----~i~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-~~~Ll 151 (354)
.-...-+..+... . ...... ..+... ...+..++..+.. ...+-+|||||+|.++... ...+.
T Consensus 73 ~f~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~--------~~~~~~lvlDD~h~~~~~~~~~~l~ 143 (903)
T PRK04841 73 RFASYLIAALQQATNGHCSKSEALAQ-KRQYASLSSLFAQLFIELAD--------WHQPLYLVIDDYHLITNPEIHEAMR 143 (903)
T ss_pred HHHHHHHHHHHHhcCcccchhhhhhc-cCCcCCHHHHHHHHHHHHhc--------CCCCEEEEEeCcCcCCChHHHHHHH
Confidence 0000000000000 0 000000 000000 0122233332222 1345799999999987544 44666
Q ss_pred HHHhhccCceeEEEEecCCCcc-cHHHhhhc--ceeeec--CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 018543 152 RTMEKYSASCRLILCCNSSSKV-TEAIRSRC--LNIRIN--SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226 (354)
Q Consensus 152 ~~le~~~~~~~~Il~~~~~~~l-~~~l~sR~--~~i~~~--~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R 226 (354)
.+++..+++..+|+++.....+ ...++-+- ..+... +++.++....+... .|..++++.+..+.+.++|.+-
T Consensus 144 ~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 144 FFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWAT 220 (903)
T ss_pred HHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHH
Confidence 6667777888888887764433 23333333 344444 88999999999753 3778899999999999999985
Q ss_pred HHH
Q 018543 227 RAI 229 (354)
Q Consensus 227 ~ai 229 (354)
-..
T Consensus 221 ~l~ 223 (903)
T PRK04841 221 ALQ 223 (903)
T ss_pred HHH
Confidence 543
No 347
>PRK09183 transposase/IS protein; Provisional
Probab=98.73 E-value=3.1e-08 Score=86.79 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=40.1
Q ss_pred CceEEEEeCCCc--CCHHHHHHHHHHHhhccCceeEEEEecCCCc-----------ccHHHhhh----cceeeecCCC
Q 018543 130 GFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCCNSSSK-----------VTEAIRSR----CLNIRINSPT 190 (354)
Q Consensus 130 ~~~viiiDE~d~--l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~-----------l~~~l~sR----~~~i~~~~~~ 190 (354)
...++||||++. ++...++.|+.++.....+..+|+++|.+.. +..++.+| |.+|.|...+
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~s 241 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGES 241 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCCC
Confidence 347999999976 4566777899988654344568888887641 12355565 4567776544
No 348
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.73 E-value=3.2e-08 Score=90.79 Aligned_cols=140 Identities=14% Similarity=0.246 Sum_probs=81.2
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC--cccccccccccccCCCccccccccccccCceeeeCCCCCCCcc
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD 106 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 106 (354)
+..|.. +.|.||+|+||||+.++++. +..++. +.+.+++..+.- .+.. ...+.+..++.....
T Consensus 28 i~~Ge~--~~llGpsGsGKSTLLr~iaG-l~~p~~~~G~i~~~g~~~~~-~~~~-----------~r~ig~vfQ~~~l~p 92 (362)
T TIGR03258 28 IEAGEL--LALIGKSGCGKTTLLRAIAG-FVKAAGLTGRIAIADRDLTH-APPH-----------KRGLALLFQNYALFP 92 (362)
T ss_pred ECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCCCEEEEECCEECCC-CCHH-----------HCCEEEEECCcccCC
Confidence 444443 89999999999999999998 667777 888887765430 0000 011222222222111
Q ss_pred hh----------------------HHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543 107 RY----------------------VVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (354)
Q Consensus 107 ~~----------------------~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (354)
.. .+.+.++.+. ...+..+|+ ..+++++++||+ ..|+...
T Consensus 93 ~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~ 172 (362)
T TIGR03258 93 HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANI 172 (362)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 11 1222222211 111111221 157899999997 8899999
Q ss_pred HHHHHHHHhhccC---ceeEEEEecCCCcccHHHhhhccee
Q 018543 147 QHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 147 ~~~Ll~~le~~~~---~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
...|++.|.+... +..+|++|++.+. ...+.+|..++
T Consensus 173 r~~l~~~l~~l~~~~~g~til~vTHd~~e-a~~l~dri~vl 212 (362)
T TIGR03258 173 RANMREEIAALHEELPELTILCVTHDQDD-ALTLADKAGIM 212 (362)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 9999988866543 3556666666543 35566776443
No 349
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.73 E-value=3.9e-08 Score=86.42 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=39.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 210 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVL 210 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 47899999998 78999999999998877643 345666666554 445556665433
No 350
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=4.8e-08 Score=85.04 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=82.4
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC---------c
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA---------N 93 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 93 (354)
+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.......+.... ..+..+.+. +
T Consensus 20 ~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~-~~i~~~~q~~~~~~~tv~e 95 (241)
T PRK14250 20 KDISVKFEGGAI--YTIVGPSGAGKSTLIKLINR-LIDPTEGSILIDGVDIKTIDVIDLR-RKIGMVFQQPHLFEGTVKD 95 (241)
T ss_pred eeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEhhhcChHHhh-hcEEEEecCchhchhhHHH
Confidence 333334444543 99999999999999999998 5677788887777543200000000 001111010 0
Q ss_pred eeeeCCCCCCCcchhHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHH
Q 018543 94 HVELSPSDAGFQDRYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM 154 (354)
Q Consensus 94 ~i~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~l 154 (354)
.+.+... ........+.++++.+.- ..+..+++ ..+++++++||+ ..|+......+.+.+
T Consensus 96 ~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (241)
T PRK14250 96 NIEYGPM-LKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174 (241)
T ss_pred HHhcchh-hcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0000000 000001122333332211 11111221 157899999997 789999999888888
Q ss_pred hhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 155 EKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 155 e~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+... +..+|++|++.+ ....+.+|+.++
T Consensus 175 ~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l 205 (241)
T PRK14250 175 VKLKNKMNLTVIWITHNME-QAKRIGDYTAFL 205 (241)
T ss_pred HHHHHhCCCEEEEEeccHH-HHHHhCCEEEEE
Confidence 76532 455666666654 345566766444
No 351
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.73 E-value=4.8e-08 Score=83.35 Aligned_cols=144 Identities=17% Similarity=0.263 Sum_probs=76.9
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeCCCC-CCC
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSPSD-AGF 104 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~-~~~ 104 (354)
.+.|.||+|+||||+++++++ +..+..+.+.+++.... ...... ..+..+.+. +.+.+.... ...
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~--~~~~~~-~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~ 101 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAG-FIEPASGSIKVNDQSHT--GLAPYQ-RPVSMLFQENNLFAHLTVRQNIGLGLHPGLKL 101 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEcc--cCChhc-cceEEEeccCccCCCCcHHHHHHhHhhccCCc
Confidence 399999999999999999998 56777787777775432 100000 001111000 000000000 000
Q ss_pred --cchhHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--cee
Q 018543 105 --QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCR 162 (354)
Q Consensus 105 --~~~~~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~ 162 (354)
.....+.+.++.+ ....+..+++ ..+++++++||+ ..|+...+..+.+.+.+... +..
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 181 (213)
T TIGR01277 102 NAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRT 181 (213)
T ss_pred cHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 0001122223221 1111111221 247899999998 78999999999999977542 456
Q ss_pred EEEEecCCCcccHHHhhhccee
Q 018543 163 LILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 163 ~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+|+++++.+ ....+.+|+..+
T Consensus 182 ii~vsh~~~-~~~~~~d~v~~l 202 (213)
T TIGR01277 182 LLMVTHHLS-DARAIASQIAVV 202 (213)
T ss_pred EEEEeCCHH-HHHhhcCeEEEE
Confidence 666666654 334455555443
No 352
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.73 E-value=4.2e-08 Score=84.49 Aligned_cols=156 Identities=14% Similarity=0.249 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC---------c
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA---------N 93 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 93 (354)
+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.......+.... ..+..+.+. +
T Consensus 24 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~-~~i~~~~q~~~l~~~tv~e 99 (225)
T PRK10247 24 NNISFSLRAGEF--KLITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDISTLKPEIYR-QQVSYCAQTPTLFGDTVYD 99 (225)
T ss_pred eccEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEcCcCCHHHHH-hccEEEecccccccccHHH
Confidence 333333444443 99999999999999999998 5677778777776533200000000 000001000 0
Q ss_pred eeeeCCCCCCC-cchhHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHH
Q 018543 94 HVELSPSDAGF-QDRYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (354)
Q Consensus 94 ~i~~~~~~~~~-~~~~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~ 153 (354)
.+.+...-.+. .....+.+.++.+.- ..+..+++ ..+++++++||+ ..|++.....+.+.
T Consensus 100 nl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (225)
T PRK10247 100 NLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEI 179 (225)
T ss_pred HHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 00000000000 001112233332211 11111121 157899999997 88999999999998
Q ss_pred Hhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543 154 MEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 154 le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+.+.. .+..+|+++++.+.+ + ..+|+..+
T Consensus 180 l~~~~~~~~~tvii~sh~~~~~-~-~~d~i~~l 210 (225)
T PRK10247 180 IHRYVREQNIAVLWVTHDKDEI-N-HADKVITL 210 (225)
T ss_pred HHHHHHhcCCEEEEEECChHHH-H-hCCEEEEE
Confidence 87753 245677777776544 3 35555444
No 353
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.73 E-value=4.1e-08 Score=84.68 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=38.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+......+|+++++.+ ....+.+|+.+
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 212 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ-QAARVADRTAF 212 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHH-HHHHhCCEEEE
Confidence 47899999998 78999999999999977654555666665544 44455566533
No 354
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=4.2e-08 Score=85.40 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=36.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~ 208 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAY 208 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEE
Confidence 57899999998 78999999888888876543 445666665543 3444555553
No 355
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=3.9e-08 Score=87.15 Aligned_cols=54 Identities=9% Similarity=0.223 Sum_probs=39.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+.+ . +.+|+.++
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~-~-~~d~v~~l 215 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-I-LADKVIVF 215 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH-h-hCCEEEEE
Confidence 47899999997 88999999999999977543 35677777777654 3 45665433
No 356
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.73 E-value=3.3e-08 Score=86.01 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=39.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..++......+.+.+.+... +..+|++|++.+ ..+.+.+|+.++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 209 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFI 209 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 47899999998 78999999999999876543 455666666654 345556665433
No 357
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.72 E-value=5.4e-08 Score=84.07 Aligned_cols=144 Identities=19% Similarity=0.276 Sum_probs=76.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc------cccCceeeeCCCC--CCCcc--
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANHVELSPSD--AGFQD-- 106 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~--~~~~~-- 106 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++.... .......+-... .+-.+.+.+.... .+...
T Consensus 14 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 90 (230)
T TIGR01184 14 ISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQIT--EPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSE 90 (230)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECC--CCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 89999999999999999998 55677787877765432 110000000000 0000001010000 00000
Q ss_pred -hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEE
Q 018543 107 -RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL 165 (354)
Q Consensus 107 -~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il 165 (354)
...+.+.++.+. ...+..+|+ ..+++++++||+ ..|++.....+.+.+.+... +..+|+
T Consensus 91 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~ 170 (230)
T TIGR01184 91 RRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170 (230)
T ss_pred HHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 011223332211 111111221 147899999998 78999999999998876432 455666
Q ss_pred EecCCCcccHHHhhhccee
Q 018543 166 CCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 166 ~~~~~~~l~~~l~sR~~~i 184 (354)
++++.+ ....+.+|+.++
T Consensus 171 ~sH~~~-~~~~~~d~v~~l 188 (230)
T TIGR01184 171 VTHDVD-EALLLSDRVVML 188 (230)
T ss_pred EeCCHH-HHHHhcCEEEEE
Confidence 666654 334455555444
No 358
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=3.9e-08 Score=85.15 Aligned_cols=45 Identities=7% Similarity=0.165 Sum_probs=35.5
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKV 173 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l 173 (354)
.+++++++||+ ..|++.....+.+.+.+.. .+..+|+++++.+.+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA 209 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 47899999997 7899999999999997753 346677777776543
No 359
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=3e-08 Score=85.81 Aligned_cols=155 Identities=18% Similarity=0.299 Sum_probs=86.0
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC----CccccccccccccCceee----
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLELTTLSSANHVE---- 96 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~---- 96 (354)
+.--+++|+. +-|.||+|+||||+.|++|+ |..++.+.+.++++.+..... .-+.++-+..-.-..|+.
T Consensus 21 i~l~i~~Ge~--vaLlGpSGaGKsTlLRiIAG-Le~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~N 97 (345)
T COG1118 21 ISLDIKSGEL--VALLGPSGAGKSTLLRIIAG-LETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADN 97 (345)
T ss_pred ceeeecCCcE--EEEECCCCCcHHHHHHHHhC-cCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhh
Confidence 3444556665 88999999999999999998 888999999998884430000 001111100000001111
Q ss_pred --eCC--C--CC-CCcchhHHHHHHHHH-----HhcCCCCCCCC------------CCceEEEEeCC-CcCCHHHHHHHH
Q 018543 97 --LSP--S--DA-GFQDRYVVQEVIKEM-----AKNRPIDTKGK------------RGFKVLVLNEV-DKLSREAQHSLR 151 (354)
Q Consensus 97 --~~~--~--~~-~~~~~~~i~~~~~~~-----~~~~~~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll 151 (354)
+-. . .. ....+..+.++++.+ +...|..+++. .+++|+++||+ ..|+......|.
T Consensus 98 IAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr 177 (345)
T COG1118 98 IAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 177 (345)
T ss_pred hhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHH
Confidence 000 0 00 001112344444332 33334334432 47899999997 778887777777
Q ss_pred HHHhhcc--CceeEEEEecCCCcccHHHhhhcce
Q 018543 152 RTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 152 ~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+.|.+.. -++..+++|++.... -.+.+|+.+
T Consensus 178 ~wLr~~~~~~~~ttvfVTHD~eea-~~ladrvvv 210 (345)
T COG1118 178 RWLRKLHDRLGVTTVFVTHDQEEA-LELADRVVV 210 (345)
T ss_pred HHHHHHHHhhCceEEEEeCCHHHH-HhhcceEEE
Confidence 7775532 247788888876533 245556543
No 360
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=3.8e-08 Score=86.47 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=39.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+ ..+.+.+|+.++
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l 211 (255)
T PRK11231 155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVL 211 (255)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 47899999997 88999999999999976543 455666666544 445555665443
No 361
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.72 E-value=9.6e-08 Score=76.07 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=68.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~ 116 (354)
+.+.||+|+||||+++++++ +..+..+.+.+++. ..+.+.++ ..... .+.+.
T Consensus 29 ~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~~~---------------------~~i~~~~~---lS~G~-~~rv~-- 80 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAG-ELEPDEGIVTWGST---------------------VKIGYFEQ---LSGGE-KMRLA-- 80 (144)
T ss_pred EEEECCCCCCHHHHHHHHcC-CCCCCceEEEECCe---------------------EEEEEEcc---CCHHH-HHHHH--
Confidence 89999999999999999998 45566665555432 11223222 11111 11111
Q ss_pred HHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 117 MAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 117 ~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
++... ..+++++++||+ ..++......+.+.+.+. ...+++++++.+ ..+.+.+|+.++
T Consensus 81 laral------~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~-~~~~~~d~v~~l 140 (144)
T cd03221 81 LAKLL------LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRY-FLDQVATKIIEL 140 (144)
T ss_pred HHHHH------hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 11111 235689999997 789999999999999775 245555555543 334555555443
No 362
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.72 E-value=4.1e-08 Score=83.20 Aligned_cols=141 Identities=15% Similarity=0.198 Sum_probs=74.4
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------eeee
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------HVEL 97 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~ 97 (354)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... .........+..+.... .+.+
T Consensus 23 ~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~p~~G~v~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~ 97 (204)
T PRK13538 23 TLNAGEL--VQIEGPNGAGKTSLLRILAG-LARPDAGEVLWQGEPIR--RQRDEYHQDLLYLGHQPGIKTELTALENLRF 97 (204)
T ss_pred EECCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEcc--cchHHhhhheEEeCCccccCcCCcHHHHHHH
Confidence 3444443 99999999999999999998 55677787777765432 00000000000000000 0000
Q ss_pred CCCCCCCcchhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-
Q 018543 98 SPSDAGFQDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS- 158 (354)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~- 158 (354)
.....+......+.+.++.+. ......+++ ..+++++++||+ ..|+......+.+.+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 177 (204)
T PRK13538 98 YQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177 (204)
T ss_pred HHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 000000001111222222211 111111121 257899999998 7899999999999987653
Q ss_pred CceeEEEEecCCCcc
Q 018543 159 ASCRLILCCNSSSKV 173 (354)
Q Consensus 159 ~~~~~Il~~~~~~~l 173 (354)
.+..+|+++++.+.+
T Consensus 178 ~~~tiii~sh~~~~i 192 (204)
T PRK13538 178 QGGMVILTTHQDLPV 192 (204)
T ss_pred CCCEEEEEecChhhh
Confidence 345677777765543
No 363
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=2.7e-08 Score=88.46 Aligned_cols=150 Identities=17% Similarity=0.258 Sum_probs=82.2
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccC-----------cee
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSA-----------NHV 95 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~i 95 (354)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... ...... ...+..+.+. +.+
T Consensus 29 ~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~--~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni 103 (279)
T PRK13650 29 HVKQGEW--LSIIGHNGSGKSTTVRLIDG-LLEAESGQIIIDGDLLT--EENVWDIRHKIGMVFQNPDNQFVGATVEDDV 103 (279)
T ss_pred EEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECC--cCcHHHHHhhceEEEcChHHhcccccHHHHH
Confidence 3444544 99999999999999999998 56778888888776542 100000 0000000000 001
Q ss_pred eeCCCCCCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHH
Q 018543 96 ELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM 154 (354)
Q Consensus 96 ~~~~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~l 154 (354)
.+.....+... ...+.+.++.+. ...+..+++ ..+++++++||+ ..|++.....+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 183 (279)
T PRK13650 104 AFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183 (279)
T ss_pred HhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 11000001111 011222222211 111112221 157899999997 889999999999988
Q ss_pred hhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 155 EKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 155 e~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+... +..+|++|++.+.+ . ..+|+.++
T Consensus 184 ~~l~~~~g~tilivtH~~~~~-~-~~dri~~l 213 (279)
T PRK13650 184 KGIRDDYQMTVISITHDLDEV-A-LSDRVLVM 213 (279)
T ss_pred HHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence 76543 46677777776654 3 46676444
No 364
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.72 E-value=8e-08 Score=81.15 Aligned_cols=130 Identities=13% Similarity=0.154 Sum_probs=74.0
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc--
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ-- 105 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 105 (354)
.+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++.... .... .. ...+.+.+++....
T Consensus 23 ~i~~Ge~--~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~--~~~~----~~-----~~~i~~~~q~~~~~~~ 88 (200)
T PRK13540 23 HLPAGGL--LHLKGSNGAGKTTLLKLIAG-LLNPEKGEILFERQSIK--KDLC----TY-----QKQLCFVGHRSGINPY 88 (200)
T ss_pred EECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeeEEECCCccc--cCHH----HH-----HhheEEeccccccCcC
Confidence 3344443 99999999999999999998 66777777777765432 0000 00 00111111111100
Q ss_pred ---------------chhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 106 ---------------DRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 106 ---------------~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
....+.+.++.+.- .....+++ ..+++++++||+ ..|+......+.+
T Consensus 89 ~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~ 168 (200)
T PRK13540 89 LTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT 168 (200)
T ss_pred CCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 00112333332210 01111221 257899999997 8899999999999
Q ss_pred HHhhcc-CceeEEEEecCCC
Q 018543 153 TMEKYS-ASCRLILCCNSSS 171 (354)
Q Consensus 153 ~le~~~-~~~~~Il~~~~~~ 171 (354)
.+.+.. ....+|+++++..
T Consensus 169 ~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 169 KIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHcCCEEEEEeCCch
Confidence 997653 3456777777654
No 365
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.72 E-value=1.1e-07 Score=80.07 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=35.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhc-cCceeEEEEecCCCcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSSSKV 173 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~~l 173 (354)
.+++++++||+ ..|+......+.+.+.+. ..+..+|++++++..+
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 144 SRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL 190 (198)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 57899999998 789999999999999764 2345677777776543
No 366
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=4.4e-08 Score=87.06 Aligned_cols=152 Identities=15% Similarity=0.258 Sum_probs=79.8
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc-----------eee
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN-----------HVE 96 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~i~ 96 (354)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++........ ......+..+.+.. .+.
T Consensus 26 ~i~~Ge~--~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~~~~~~~tv~~~l~ 101 (277)
T PRK13652 26 IAPRNSR--IAVIGPNGAGKSTLFRHFNG-ILKPTSGSVLIRGEPITKENI-REVRKFVGLVFQNPDDQIFSPTVEQDIA 101 (277)
T ss_pred EEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCH-HHHHhheEEEecCcccccccccHHHHHH
Confidence 3444443 89999999999999999998 667788888877764320000 00000000000000 000
Q ss_pred eCCCCCCCcch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHh
Q 018543 97 LSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (354)
Q Consensus 97 ~~~~~~~~~~~---~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le 155 (354)
+.....+.... ..+.+.++.+. ...+..+|+ ..+++++++||+ ..|++.....+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~ 181 (277)
T PRK13652 102 FGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181 (277)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 00000000000 01222222211 111111221 157899999998 7899999999999987
Q ss_pred hccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 156 KYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 156 ~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+... +..+|++|++.+ ....+.+|+.++
T Consensus 182 ~l~~~~g~tvli~tH~~~-~~~~~~drv~~l 211 (277)
T PRK13652 182 DLPETYGMTVIFSTHQLD-LVPEMADYIYVM 211 (277)
T ss_pred HHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 6543 355666665554 444566776443
No 367
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.72 E-value=4.1e-08 Score=90.43 Aligned_cols=139 Identities=17% Similarity=0.319 Sum_probs=81.1
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 107 (354)
.+..|.. +.|.||+|+||||+.+++++ +..++.+.+.+++..+.- .+..+ ..+.+.+++......
T Consensus 36 ~i~~Ge~--~~LlGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~-~~~~~-----------r~ig~vfQ~~~lfp~ 100 (375)
T PRK09452 36 TINNGEF--LTLLGPSGCGKTTVLRLIAG-FETPDSGRIMLDGQDITH-VPAEN-----------RHVNTVFQSYALFPH 100 (375)
T ss_pred EEeCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCC-CCHHH-----------CCEEEEecCcccCCC
Confidence 3444543 89999999999999999998 667888888888876531 01000 112222222211111
Q ss_pred h----------------------HHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543 108 Y----------------------VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (354)
Q Consensus 108 ~----------------------~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (354)
. .+.+.++.+ ....+..+++ ..+++++++||+ ..|+....
T Consensus 101 ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r 180 (375)
T PRK09452 101 MTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180 (375)
T ss_pred CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 1 122222211 1111111221 147899999997 78999999
Q ss_pred HHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcc
Q 018543 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 148 ~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
..|++.|.+... +..+|++|++... ...+.+|+.
T Consensus 181 ~~l~~~L~~l~~~~g~tiI~vTHd~~e-a~~laDri~ 216 (375)
T PRK09452 181 KQMQNELKALQRKLGITFVFVTHDQEE-ALTMSDRIV 216 (375)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEE
Confidence 888888876532 4667777766543 344556654
No 368
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=6.8e-08 Score=84.60 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=39.8
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+ ....+.+|+.++
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 218 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQ-QAARISDYVAFL 218 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 47899999997 78999999999999977654555666666554 344555665444
No 369
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.71 E-value=9.4e-08 Score=81.19 Aligned_cols=146 Identities=15% Similarity=0.257 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
.+.+.-.+..|.. +.+.||+|+||||+++++++ +..+..+.+.+++.... ..... . ....+.+.+++
T Consensus 24 l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~--~~~~~---~-----~~~~i~~v~q~ 90 (207)
T cd03369 24 LKNVSFKVKAGEK--IGIVGRTGAGKSTLILALFR-FLEAEEGKIEIDGIDIS--TIPLE---D-----LRSSLTIIPQD 90 (207)
T ss_pred ccCceEEECCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEhH--HCCHH---H-----HHhhEEEEecC
Confidence 3333333444443 99999999999999999998 55677777777665332 00000 0 00011111111
Q ss_pred CCC--------------cchhHHHHHHHHHHhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHH
Q 018543 102 AGF--------------QDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM 154 (354)
Q Consensus 102 ~~~--------------~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~l 154 (354)
... .....+.+.++ . ......+++ ..+++++++||+ ..|++.....+.+.+
T Consensus 91 ~~~~~~tv~~~l~~~~~~~~~~~~~~l~-~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 168 (207)
T cd03369 91 PTLFSGTIRSNLDPFDEYSDEEIYGALR-V-SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTI 168 (207)
T ss_pred CcccCccHHHHhcccCCCCHHHHHHHhh-c-cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 100 01111222222 1 111111221 147899999997 789999999999999
Q ss_pred hhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 155 e~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+...+..+|++|++.+.+ .. .+|+.++
T Consensus 169 ~~~~~~~tiii~th~~~~~-~~-~d~v~~l 196 (207)
T cd03369 169 REEFTNSTILTIAHRLRTI-ID-YDKILVM 196 (207)
T ss_pred HHhcCCCEEEEEeCCHHHH-hh-CCEEEEE
Confidence 8765556677777776544 22 4555433
No 370
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=3e-08 Score=88.16 Aligned_cols=157 Identities=15% Similarity=0.219 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccC-------
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSA------- 92 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------- 92 (354)
+.+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+. ...... ...+..+.+.
T Consensus 22 ~l~~vsl~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-~~~p~~G~i~~~g~~i~--~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 22 ALKDVSFSVYEGEW--VAIVGHNGSGKSTLAKLLNG-LLLPEAGTITVGGMVLS--EETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECC--cCcHHHHhhheEEEEeCHHHhccc
Confidence 33444444555554 89999999999999999998 56778888888876543 110000 0000000000
Q ss_pred ----ceeeeCCCCCCCcch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543 93 ----NHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (354)
Q Consensus 93 ----~~i~~~~~~~~~~~~---~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (354)
+.+.+.....+.... ..+.+.++.+. ...+..+|+ ..+++++++||+ ..|++..+
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~ 176 (279)
T PRK13635 97 ATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR 176 (279)
T ss_pred ccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 000000000000000 01222222211 111111221 157899999997 78999999
Q ss_pred HHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 148 ~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
..+.+.+.+... +..+|+++++.+.+ +. .+|+.++
T Consensus 177 ~~l~~~l~~l~~~~~~tilivsH~~~~~-~~-~d~i~~l 213 (279)
T PRK13635 177 REVLETVRQLKEQKGITVLSITHDLDEA-AQ-ADRVIVM 213 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHH-Hc-CCEEEEE
Confidence 999999976543 46677777776644 33 5665443
No 371
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.8e-07 Score=82.30 Aligned_cols=173 Identities=23% Similarity=0.320 Sum_probs=104.5
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 115 (354)
++|+.||.|+|||.+++.+|+-+.-|-. + .+|.++++. |+.. ..+..++.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfa----I---------------cDcTtLTQA----------GYVG-eDVEsvi~ 277 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFA----I---------------CDCTTLTQA----------GYVG-EDVESVIQ 277 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeE----E---------------ecccchhhc----------cccc-ccHHHHHH
Confidence 5999999999999999999996632210 0 133333322 1111 12334444
Q ss_pred HHHhcCCCCCCCCCCceEEEEeCCCcCC--------------HHHHHHHHHHHhhcc-------------------Ccee
Q 018543 116 EMAKNRPIDTKGKRGFKVLVLNEVDKLS--------------REAQHSLRRTMEKYS-------------------ASCR 162 (354)
Q Consensus 116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~--------------~~~~~~Ll~~le~~~-------------------~~~~ 162 (354)
.+......+. ...+..||+|||+|.+. +..|++|++++|-.. .+.-
T Consensus 278 KLl~~A~~nV-ekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtn 356 (564)
T KOG0745|consen 278 KLLQEAEYNV-EKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTN 356 (564)
T ss_pred HHHHHccCCH-HHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccc
Confidence 4333332211 13456899999999985 357999999997421 1122
Q ss_pred EEEEecCCC----------------------------------------------------------cccHHHhhhcc-e
Q 018543 163 LILCCNSSS----------------------------------------------------------KVTEAIRSRCL-N 183 (354)
Q Consensus 163 ~Il~~~~~~----------------------------------------------------------~l~~~l~sR~~-~ 183 (354)
+.|+|.-.- .++|.+.-|+- +
T Consensus 357 ILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVl 436 (564)
T KOG0745|consen 357 ILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVL 436 (564)
T ss_pred eEEEecccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceE
Confidence 444433100 12344444543 5
Q ss_pred eeecCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcC
Q 018543 184 IRINSPTEEQIVKVLEFI-----------AKKEG--LQLPSGFATRLAEKS---NRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 184 i~~~~~~~~~~~~~L~~~-----------~~~~~--~~i~~~~l~~i~~~s---~gd~R~ai~~L~~~~~~~ 239 (354)
+.|.+++.+++..+|..= ....+ +.+++++++.|++.+ +..+|-...+||.+.+..
T Consensus 437 Vplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Llea 508 (564)
T KOG0745|consen 437 VPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEA 508 (564)
T ss_pred eeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhh
Confidence 789999999999988531 11123 357899999999864 345777778888776653
No 372
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=4e-08 Score=85.58 Aligned_cols=54 Identities=9% Similarity=0.188 Sum_probs=38.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+.. .+..+|+++++.+. ...+.+|+.+
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~ 217 (241)
T cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVG 217 (241)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 47899999998 7899999999999887653 24566666666543 3455566543
No 373
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=3.7e-08 Score=85.82 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=37.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~ 212 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVV 212 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 47899999998 78999999999999977543 345556555554 3345556653
No 374
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.71 E-value=1.6e-08 Score=79.13 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=29.5
Q ss_pred eEEEEeCCCcC-CHHHHHHHHHHHhhccCceeEEEEecC
Q 018543 132 KVLVLNEVDKL-SREAQHSLRRTMEKYSASCRLILCCNS 169 (354)
Q Consensus 132 ~viiiDE~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~ 169 (354)
.+|||||+|.+ +.+..+.|...++ ..++.+|++.+.
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 69999999999 8888888877777 456788888765
No 375
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.70 E-value=1.2e-08 Score=87.75 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=73.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---hHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---YVVQEV 113 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~i~~~ 113 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++.... .......+. ...+-.+.+.+.....+.... ..+.++
T Consensus 51 ~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~--~~~~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (224)
T cd03220 51 IGLIGRNGAGKSTLLRLLAG-IYPPDSGTVTVRGRVSS--LLGLGGGFN-PELTGRENIYLNGRLLGLSRKEIDEKIDEI 126 (224)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEch--hhcccccCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999998 55677777777665321 000000000 000000011100000000000 012222
Q ss_pred HHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCc-eeEEEEecCCCccc
Q 018543 114 IKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVT 174 (354)
Q Consensus 114 ~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~~l~ 174 (354)
++.+. ......+++ ..+++++++||+ ..|+...+..+.+.+.+.... ..+|+++++.+ ..
T Consensus 127 l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~ 205 (224)
T cd03220 127 IEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SI 205 (224)
T ss_pred HHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH
Confidence 22211 001111121 157899999997 789999999999888765333 45566555543 33
Q ss_pred HHHhhhccee
Q 018543 175 EAIRSRCLNI 184 (354)
Q Consensus 175 ~~l~sR~~~i 184 (354)
..+.+|+.++
T Consensus 206 ~~~~d~i~~l 215 (224)
T cd03220 206 KRLCDRALVL 215 (224)
T ss_pred HHhCCEEEEE
Confidence 4455555433
No 376
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.70 E-value=4.3e-08 Score=84.62 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=34.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCC
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 171 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 57899999997 78999999999999976532 456777777765
No 377
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.70 E-value=4.5e-08 Score=82.71 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=80.5
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------
Q 018543 24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN---------- 93 (354)
Q Consensus 24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 93 (354)
.+.-.+..|.. +.|.||+|+||||+.+.+++ +..+..+.+.+++.........-+. .+..+.+..
T Consensus 18 ~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~--~i~~~~q~~~~~~~~tv~e 92 (201)
T cd03231 18 GLSFTLAAGEA--LQVTGPNGSGKTTLLRILAG-LSPPLAGRVLLNGGPLDFQRDSIAR--GLLYLGHAPGIKTTLSVLE 92 (201)
T ss_pred cceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccccHHhhh--heEEeccccccCCCcCHHH
Confidence 33334444544 99999999999999999998 5567777777766543200000000 010110000
Q ss_pred eeeeCCCCCCCcchhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHh
Q 018543 94 HVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (354)
Q Consensus 94 ~i~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le 155 (354)
.+.+.. .......+.+.++.+.- .....+++ ..+++++++||+ ..|++.....+.+.+.
T Consensus 93 ~l~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 169 (201)
T cd03231 93 NLRFWH---ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA 169 (201)
T ss_pred HHHhhc---ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 000000 00011122333332211 01111121 247899999997 7899999999999886
Q ss_pred hcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543 156 KYS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 156 ~~~-~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+.. .+..+|+++++...+.. ..+|+..
T Consensus 170 ~~~~~g~tiii~sH~~~~~~~-~~~~~~~ 197 (201)
T cd03231 170 GHCARGGMVVLTTHQDLGLSE-AGARELD 197 (201)
T ss_pred HHHhCCCEEEEEecCchhhhh-ccceeEe
Confidence 643 34567777776665544 5555533
No 378
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.70 E-value=8.4e-08 Score=82.37 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=36.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 173 (354)
.+++++++||+ ..|++..+..+.+.+.+...+..+|+++++.+.+
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 201 (221)
T cd03244 156 RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI 201 (221)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 47899999998 7899999999999998765556677777776544
No 379
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.70 E-value=4.1e-08 Score=85.23 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=39.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+....+.+.+.+.+... ...+|++|++.+ ..+.+.+|+..+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l 204 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVM 204 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEE
Confidence 47899999998 78999999999999977543 355666666553 335555665433
No 380
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.70 E-value=6.5e-08 Score=84.72 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=39.0
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l 217 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFM 217 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 47899999998 78999999999998876543 445666655543 445556665444
No 381
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.69 E-value=1.8e-07 Score=73.86 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=36.3
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 74 (354)
+..|.. +.++||+||||||+.+.+|. +..++.+.+.+.|+.++
T Consensus 26 v~~Ge~--iaitGPSG~GKStllk~va~-Lisp~~G~l~f~Ge~vs 68 (223)
T COG4619 26 VRAGEF--IAITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDVS 68 (223)
T ss_pred ecCCce--EEEeCCCCccHHHHHHHHHh-ccCCCCceEEEcCcccc
Confidence 344444 89999999999999999998 77899998888888765
No 382
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=5.6e-08 Score=90.14 Aligned_cols=139 Identities=15% Similarity=0.252 Sum_probs=77.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------- 107 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------- 107 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++..+. ..... ..... ....+.+.+++......
T Consensus 57 ~~LvG~NGsGKSTLLr~I~G-l~~p~sG~I~i~G~~i~--~~~~~---~l~~~-~~~~igyv~Q~~~l~~~~Tv~enl~~ 129 (400)
T PRK10070 57 FVIMGLSGSGKSTMVRLLNR-LIEPTRGQVLIDGVDIA--KISDA---ELREV-RRKKIAMVFQSFALMPHMTVLDNTAF 129 (400)
T ss_pred EEEECCCCchHHHHHHHHHc-CCCCCCCEEEECCEECC--cCCHH---HHHHH-HhCCEEEEECCCcCCCCCCHHHHHHH
Confidence 89999999999999999998 66788888888776543 10000 00000 00012222221111110
Q ss_pred -------------hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 108 -------------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 108 -------------~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
..+.+.++.+. ...+..+|+ ..+++++++||+ ..|++.....+.+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~ 209 (400)
T PRK10070 130 GMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVK 209 (400)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 11222222221 111111221 147899999997 78999999988888866
Q ss_pred cc--CceeEEEEecCCCcccHHHhhhcce
Q 018543 157 YS--ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 157 ~~--~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.. .+..+|++|++.+. ...+.+|+.+
T Consensus 210 l~~~~g~TIIivTHd~~~-~~~~~Dri~v 237 (400)
T PRK10070 210 LQAKHQRTIVFISHDLDE-AMRIGDRIAI 237 (400)
T ss_pred HHHHCCCeEEEEECCHHH-HHHhCCEEEE
Confidence 53 24566777766543 3445556543
No 383
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=5e-08 Score=84.41 Aligned_cols=142 Identities=18% Similarity=0.318 Sum_probs=77.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeCCC-CCCCc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSPS-DAGFQ 105 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~-~~~~~ 105 (354)
+.|.||+|+||||+++.+++ +..+..+.+.+++..........+ .+..+.+. +.+.+... .....
T Consensus 28 ~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~---~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 103 (232)
T PRK10771 28 VAILGPSGAGKSTLLNLIAG-FLTPASGSLTLNGQDHTTTPPSRR---PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN 103 (232)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCeecCcCChhhc---cEEEEecccccccCCcHHHHHhcccccccCCC
Confidence 99999999999999999998 556777877777754320000000 01111110 00110000 00000
Q ss_pred --chhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeE
Q 018543 106 --DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRL 163 (354)
Q Consensus 106 --~~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~ 163 (354)
....+.++++.+. ...+..+++ ..+++++++||+ ..|+...+..+.+.+.+... +..+
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~ti 183 (232)
T PRK10771 104 AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTL 183 (232)
T ss_pred HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 0111333333221 111112221 257899999998 78999999999999977532 4566
Q ss_pred EEEecCCCcccHHHhhhcce
Q 018543 164 ILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 164 Il~~~~~~~l~~~l~sR~~~ 183 (354)
|+++++.+ ..+.+.+|+.+
T Consensus 184 ii~sH~~~-~~~~~~d~i~~ 202 (232)
T PRK10771 184 LMVSHSLE-DAARIAPRSLV 202 (232)
T ss_pred EEEECCHH-HHHHhCCEEEE
Confidence 66666655 33455566543
No 384
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=4.6e-08 Score=86.58 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=79.8
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCce-----------ee
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH-----------VE 96 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------i~ 96 (354)
.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..... .+.......+..+.+... +.
T Consensus 31 ~i~~Ge~--~~I~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~ 106 (269)
T PRK13648 31 NIPKGQW--TSIVGHNGSGKSTIAKLMIG-IEKVKSGEIFYNNQAITD-DNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA 106 (269)
T ss_pred EEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCc-CCHHHHHhheeEEEeChHHhcccccHHHHHH
Confidence 3344443 89999999999999999998 567777888887764420 000000000111110000 00
Q ss_pred eCCCCCCCcch---hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHh
Q 018543 97 LSPSDAGFQDR---YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (354)
Q Consensus 97 ~~~~~~~~~~~---~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le 155 (354)
+.....+.... ..+.++++.+.- ..+..+++ ..+++++++||+ ..|++.....+.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 186 (269)
T PRK13648 107 FGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVR 186 (269)
T ss_pred hhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 00000000000 112222222211 11111221 147899999998 8899999999999887
Q ss_pred hccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 156 KYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 156 ~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+... +..+|+++++.+.+. . .+|+.++
T Consensus 187 ~~~~~~~~tiiivtH~~~~~~-~-~d~i~~l 215 (269)
T PRK13648 187 KVKSEHNITIISITHDLSEAM-E-ADHVIVM 215 (269)
T ss_pred HHHHhcCCEEEEEecCchHHh-c-CCEEEEE
Confidence 6532 456777777766543 3 5665433
No 385
>PF05729 NACHT: NACHT domain
Probab=98.69 E-value=2.5e-07 Score=75.39 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=47.6
Q ss_pred CceEEEEeCCCcCCHHHH--------HHHHHHHhh-ccCceeEEEEecCCCc-ccHHHhhhcceeeecCCCHHHHHHHHH
Q 018543 130 GFKVLVLNEVDKLSREAQ--------HSLRRTMEK-YSASCRLILCCNSSSK-VTEAIRSRCLNIRINSPTEEQIVKVLE 199 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~--------~~Ll~~le~-~~~~~~~Il~~~~~~~-l~~~l~sR~~~i~~~~~~~~~~~~~L~ 199 (354)
+.-++|||-+|.+..... ..|...+.. .+.+++++++|+.... -..........+.+.+++.+++..+++
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 446899999988865332 234455554 3556778887764432 122222223678999999999999998
Q ss_pred HHHH
Q 018543 200 FIAK 203 (354)
Q Consensus 200 ~~~~ 203 (354)
+...
T Consensus 161 ~~f~ 164 (166)
T PF05729_consen 161 KYFS 164 (166)
T ss_pred HHhh
Confidence 7653
No 386
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.69 E-value=4.6e-08 Score=84.02 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=34.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSK 172 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~ 172 (354)
.+++++++||+ ..|+......+.+.+.+.. .+..+|+++++.+.
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 204 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 47899999998 7899999999999987653 24567777777653
No 387
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.69 E-value=9.6e-08 Score=81.95 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=40.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+......+|+++++.+ +. .+.+|+..+
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~-~~~d~v~~l 211 (220)
T cd03245 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS-LL-DLVDRIIVM 211 (220)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HH-HhCCEEEEE
Confidence 47899999998 88999999999999987655556677776665 33 455555443
No 388
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.69 E-value=5.7e-08 Score=85.82 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=39.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l 217 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIAL 217 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 47899999998 78999999999999977543 345666655544 455666666433
No 389
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.69 E-value=7.8e-08 Score=82.07 Aligned_cols=152 Identities=17% Similarity=0.291 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA---------- 92 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 92 (354)
+.+.-.+..|.. +.|.||+|+||||+++.+++ +..++.+.+.+++.... .... .+..+.+.
T Consensus 16 ~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~--~~~~----~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 16 EDVSFEVKPGEF--LAIVGPNGAGKSTLLKAILG-LLKPTSGSIRVFGKPLE--KERK----RIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred ecceeEEcCCCE--EEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCccHH--HHHh----heEEeccccccccCCCCc
Confidence 334444445544 99999999999999999998 55677777777764321 0000 01111100
Q ss_pred --ceeeeCCCCC-C---C-c--chhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHH
Q 018543 93 --NHVELSPSDA-G---F-Q--DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSRE 145 (354)
Q Consensus 93 --~~i~~~~~~~-~---~-~--~~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~ 145 (354)
+.+.+..... . . . ....+.+.++.+. ...+..+|+ ..+++++++||+ ..|++.
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 166 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 0011100000 0 0 0 0112233333221 111112221 147899999998 889999
Q ss_pred HHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhccee
Q 018543 146 AQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 146 ~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
....+.+.+.+.. .+..+|+++++.+ ....+.+|+.++
T Consensus 167 ~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l 205 (213)
T cd03235 167 TQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLL 205 (213)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 9999999987754 3455666666654 334455555443
No 390
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=8.5e-08 Score=82.20 Aligned_cols=158 Identities=19% Similarity=0.301 Sum_probs=86.7
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc----cCCCccccccccc----c---ccCc
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI----DAGSRNIDLELTT----L---SSAN 93 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~---~~~~ 93 (354)
+...+..|.. +++.||+|+||||+++.++. +..+..+.+.+++..+.. ..-..+.++-+.. + +-.+
T Consensus 23 v~~~i~~Ge~--~~i~G~nGsGKSTL~~~l~G-Ll~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~ 99 (235)
T COG1122 23 VSLEIEKGER--VLLIGPNGSGKSTLLKLLNG-LLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVED 99 (235)
T ss_pred eEEEECCCCE--EEEECCCCCCHHHHHHHHcC-cCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHH
Confidence 3334444544 99999999999999999998 778888888777754330 0000000000000 0 0000
Q ss_pred eeeeCCCCCCCcchh---HHHHHHHHHH-----hcCCCCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 94 HVELSPSDAGFQDRY---VVQEVIKEMA-----KNRPIDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 94 ~i~~~~~~~~~~~~~---~i~~~~~~~~-----~~~~~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
.+.+-+...+..... .+.+.+..+. ...+..+|+. -+++++++||+ -.|++.....+++
T Consensus 100 evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~ 179 (235)
T COG1122 100 EVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179 (235)
T ss_pred HHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 011222222322211 2233332222 2233334432 36889999998 7889999999999
Q ss_pred HHhhccCc--eeEEEEecCCCcccHHHhhhcceeee
Q 018543 153 TMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNIRI 186 (354)
Q Consensus 153 ~le~~~~~--~~~Il~~~~~~~l~~~l~sR~~~i~~ 186 (354)
.+.+.... ..+|++|++ -.......+|+.++.=
T Consensus 180 ~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~~ 214 (235)
T COG1122 180 LLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLDD 214 (235)
T ss_pred HHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEEC
Confidence 99876544 345555554 4444566677655443
No 391
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=6.1e-08 Score=89.46 Aligned_cols=133 Identities=15% Similarity=0.239 Sum_probs=75.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH-------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV------- 109 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------- 109 (354)
+.|.||+|+||||+.+++|+ +..++.+.+.+++..+.. -+.. ...+.+.+++.......+
T Consensus 48 ~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~-~~~~-----------~r~ig~vfQ~~~lfp~ltv~eNi~~ 114 (377)
T PRK11607 48 FALLGASGCGKSTLLRMLAG-FEQPTAGQIMLDGVDLSH-VPPY-----------QRPINMMFQSYALFPHMTVEQNIAF 114 (377)
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCC-CCHH-----------HCCEEEEeCCCccCCCCCHHHHHHH
Confidence 89999999999999999998 677888888888765430 0000 011222222222211111
Q ss_pred ---------------HHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 110 ---------------VQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 110 ---------------i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
+.++++.+. ...+..+|+ ..+++++++||+ ..|+......++..+.+
T Consensus 115 ~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 194 (377)
T PRK11607 115 GLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD 194 (377)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 122222111 011111221 147899999997 78998888877766644
Q ss_pred cc--CceeEEEEecCCCcccHHHhhhcce
Q 018543 157 YS--ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 157 ~~--~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.. .+..+|++|++.+ ....+.+|+.+
T Consensus 195 l~~~~g~tii~vTHd~~-ea~~laDri~v 222 (377)
T PRK11607 195 ILERVGVTCVMVTHDQE-EAMTMAGRIAI 222 (377)
T ss_pred HHHhcCCEEEEEcCCHH-HHHHhCCEEEE
Confidence 32 2456666666654 33456666543
No 392
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=2.7e-08 Score=88.16 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC-ccccccccccccCce------
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELTTLSSANH------ 94 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------ 94 (354)
.+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......... ......+..+.+...
T Consensus 17 l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (271)
T PRK13638 17 LKGLNLDFSLSPV--TGLVGANGCGKSTLFMNLSG-LLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT 93 (271)
T ss_pred ccceEEEEcCCCE--EEEECCCCCCHHHHHHHHcC-CCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence 3344444445544 99999999999999999998 5677778887777643200000 000000111111000
Q ss_pred -----eeeCCCCCCCcch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHH
Q 018543 95 -----VELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (354)
Q Consensus 95 -----i~~~~~~~~~~~~---~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (354)
+.+.....+.... ..+.+.++.+. ...+..+|+ ..+++++++||+ ..|++....
T Consensus 94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~ 173 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173 (271)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 0000000000000 01222222211 111111221 147899999998 789999999
Q ss_pred HHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 149 ~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 174 ~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l 209 (271)
T PRK13638 174 QMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVL 209 (271)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999877543 345666665543 445566665443
No 393
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=5.6e-08 Score=84.38 Aligned_cols=54 Identities=13% Similarity=0.267 Sum_probs=39.7
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++..+..+.+.+.+...+..+|+++++.+.+ .. .+|+..+
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~-~d~~~~l 208 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VN-ADKIIVL 208 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence 57899999997 7899999999999997765555566666666544 33 5665444
No 394
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=6.9e-08 Score=85.27 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=38.8
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l 221 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVAL 221 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 57899999998 78999999988888876532 455666666654 344555665443
No 395
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.68 E-value=5.7e-08 Score=89.17 Aligned_cols=139 Identities=16% Similarity=0.257 Sum_probs=78.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-------- 108 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------- 108 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+. ...... .. ......+.+.+++.......
T Consensus 27 ~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~~~--~~~~~~--~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~ 99 (352)
T PRK11144 27 TAIFGRSGAGKTSLINAISG-LTRPQKGRIVLNGRVLF--DAEKGI--CL--PPEKRRIGYVFQDARLFPHYKVRGNLRY 99 (352)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcc--cccccc--cc--chhhCCEEEEcCCcccCCCCcHHHHHHh
Confidence 99999999999999999998 56777787877776543 100000 00 00011222322222221111
Q ss_pred --------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--c
Q 018543 109 --------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--S 160 (354)
Q Consensus 109 --------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~ 160 (354)
.+.++++.+.- ..+..+|+ ..+++++++||+ ..|++.....+++.+.+... +
T Consensus 100 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g 179 (352)
T PRK11144 100 GMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN 179 (352)
T ss_pred hhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 12222222211 11111221 147899999997 78999999988888876532 3
Q ss_pred eeEEEEecCCCcccHHHhhhcce
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
..+|++|++.+ ....+.+|+.+
T Consensus 180 ~tii~vTHd~~-~~~~~~d~i~~ 201 (352)
T PRK11144 180 IPILYVSHSLD-EILRLADRVVV 201 (352)
T ss_pred CeEEEEecCHH-HHHHhCCEEEE
Confidence 56777777654 33455566543
No 396
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.68 E-value=1.2e-07 Score=81.51 Aligned_cols=137 Identities=21% Similarity=0.268 Sum_probs=75.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc------------eeeeCCC---C
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN------------HVELSPS---D 101 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~---~ 101 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++.... .... .+..+.+.. .+.+... .
T Consensus 9 ~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~--~~~~----~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 9 LGLLGPNGAGKTTLLRAILG-LIPPAKGTVKVAGASPG--KGWR----HIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCccch--HhhC----cEEEecccccccCCCCccHHHHHHhccccccc
Confidence 89999999999999999998 55677777777765321 0000 011111100 0000000 0
Q ss_pred -CC-C--cchhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC
Q 018543 102 -AG-F--QDRYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (354)
Q Consensus 102 -~~-~--~~~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~ 159 (354)
.. . .....+.+.++.+.-. .+..+++ ..+++++++||+ ..|+...+..+.+.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~ 161 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG 161 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 0 0011233334332211 1111121 257899999997 78999999999999977643
Q ss_pred -ceeEEEEecCCCcccHHHhhhc
Q 018543 160 -SCRLILCCNSSSKVTEAIRSRC 181 (354)
Q Consensus 160 -~~~~Il~~~~~~~l~~~l~sR~ 181 (354)
+..+|+++++.+ ....+.+|.
T Consensus 162 ~~~tvii~sH~~~-~~~~~~d~i 183 (223)
T TIGR03771 162 AGTAILMTTHDLA-QAMATCDRV 183 (223)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEE
Confidence 455666666654 334444554
No 397
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.68 E-value=1.5e-07 Score=81.13 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++..+..+.+.+.+... ...+|+++++.......+.+|+.++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence 47899999998 78999999999999876533 4566666666544445566665444
No 398
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.67 E-value=5.8e-08 Score=83.66 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=39.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+.+ .. .+|+..
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~i~~ 220 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTV-ER-ADQILV 220 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH-Hh-CCEEEE
Confidence 57899999998 7899999999999997765556777777776543 32 444433
No 399
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=6.7e-08 Score=83.63 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++... .+.+.+|+.+
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~i~~ 203 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE-ALTMSDRIAV 203 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEE
Confidence 57899999998 78999999999999977543 4566666666543 3555566543
No 400
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=7.9e-08 Score=82.11 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=38.6
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+. ...+.+|+.++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l 205 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE-AEYLADRIVVM 205 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH-HHHhcCEEEEE
Confidence 57899999997 88999999999998876532 3556666666543 34555554433
No 401
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.67 E-value=7.5e-08 Score=88.49 Aligned_cols=139 Identities=17% Similarity=0.222 Sum_probs=77.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------- 107 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------- 107 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+....... ... .....+.+.+++......
T Consensus 26 ~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~i~~~~~~~----~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~ 98 (354)
T TIGR02142 26 TAIFGRSGSGKTTLIRLIAG-LTRPDEGEIVLNGRTLFDSRKGI----FLP--PEKRRIGYVFQEARLFPHLSVRGNLRY 98 (354)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECccCcccc----ccc--hhhCCeEEEecCCccCCCCcHHHHHHH
Confidence 89999999999999999998 56777788888776543100000 000 000011121111111110
Q ss_pred -----------hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhcc
Q 018543 108 -----------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (354)
Q Consensus 108 -----------~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~ 158 (354)
..+.++++.+. ...+..+++ ..+++++++||+ ..|++.....+++.|.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~ 178 (354)
T TIGR02142 99 GMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLH 178 (354)
T ss_pred HhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 11223332221 111111221 147899999997 8899999999999887653
Q ss_pred C--ceeEEEEecCCCcccHHHhhhcce
Q 018543 159 A--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 159 ~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
. +..+|++|++.+. ...+.+|+.+
T Consensus 179 ~~~g~tiiivtH~~~~-~~~~~d~i~~ 204 (354)
T TIGR02142 179 AEFGIPILYVSHSLQE-VLRLADRVVV 204 (354)
T ss_pred HhcCCEEEEEecCHHH-HHHhCCEEEE
Confidence 3 4557777766543 3455566543
No 402
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.67 E-value=1.1e-07 Score=87.21 Aligned_cols=148 Identities=13% Similarity=0.220 Sum_probs=80.6
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------eeeeC
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------HVELS 98 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~ 98 (354)
+..|.. +.|.||+|+||||+++++++ +..++.+.+.+++.......+..+ .+..+.+.. .+.+.
T Consensus 25 i~~Ge~--~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~~~~~~r---~i~~v~Q~~~l~p~~tv~eni~~~ 98 (353)
T PRK10851 25 IPSGQM--VALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARDR---KVGFVFQHYALFRHMTVFDNIAFG 98 (353)
T ss_pred EcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHC---CEEEEecCcccCCCCcHHHHHHhh
Confidence 344544 99999999999999999998 667888888888765431000000 111111110 01110
Q ss_pred CCC----CCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHH
Q 018543 99 PSD----AGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (354)
Q Consensus 99 ~~~----~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~ 153 (354)
... .+... ...+.++++.+. ...+..+|+ ..+++++++||+ ..|+......+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~ 178 (353)
T PRK10851 99 LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRW 178 (353)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 000 00000 012223333221 111111221 157899999997 78999999999998
Q ss_pred HhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 154 MEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 154 le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+.+... +..+|++|++.+ ....+.+|+.+
T Consensus 179 L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~v 209 (353)
T PRK10851 179 LRQLHEELKFTSVFVTHDQE-EAMEVADRVVV 209 (353)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 876543 355666666653 33445566543
No 403
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.67 E-value=8.3e-08 Score=84.14 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc--------
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN-------- 93 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 93 (354)
.+.+.-.+..|.. +.|.||+|+||||+++.+++ +..+..+.+.+++.... .... .+..+.+..
T Consensus 28 l~~isl~i~~Ge~--~~I~G~NGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~~--~~~~----~i~~v~q~~~l~~~~tv 98 (257)
T PRK11247 28 LNQLDLHIPAGQF--VAVVGRSGCGKSTLLRLLAG-LETPSAGELLAGTAPLA--EARE----DTRLMFQDARLLPWKKV 98 (257)
T ss_pred eeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEHH--HhhC----ceEEEecCccCCCCCcH
Confidence 3334334444544 99999999999999999998 55666676666543221 0000 000000000
Q ss_pred --eeeeCCCCCCCcchhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHH
Q 018543 94 --HVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (354)
Q Consensus 94 --~i~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~ 153 (354)
.+.+.. .......+.+.++.+.- ..+..+|+ ..+++++++||+ ..|++.....+.+.
T Consensus 99 ~enl~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~ 175 (257)
T PRK11247 99 IDNVGLGL---KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDL 175 (257)
T ss_pred HHHHHhcc---cchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 000000 00001112233322211 11111221 147899999998 78999999999888
Q ss_pred Hhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543 154 MEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 154 le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+.+.. .+..+|+++++.+ ....+.+|+.++
T Consensus 176 L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l 207 (257)
T PRK11247 176 IESLWQQHGFTVLLVTHDVS-EAVAMADRVLLI 207 (257)
T ss_pred HHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 87642 2455666666654 334555665433
No 404
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.67 E-value=8.5e-08 Score=88.10 Aligned_cols=170 Identities=23% Similarity=0.404 Sum_probs=106.1
Q ss_pred HHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------cee
Q 018543 26 KKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHV 95 (354)
Q Consensus 26 ~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i 95 (354)
.-.+..|.+ --|.|.+|.||||+.+.+.. ++.|+.+.+.++++...+..|.......+..+-++ +.+
T Consensus 24 ~l~v~~GeI--HaLLGENGAGKSTLm~iL~G-~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENi 100 (501)
T COG3845 24 SLSVKKGEI--HALLGENGAGKSTLMKILFG-LYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENI 100 (501)
T ss_pred eeeecCCcE--EEEeccCCCCHHHHHHHHhC-cccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhh
Confidence 334556666 45889999999999999998 78999999999999888767664322222111111 111
Q ss_pred eeC--CCCCCCcchhHHHHHHHHHHhcCCCCCCC---------------------CCCceEEEEeCC-CcCCHHHHHHHH
Q 018543 96 ELS--PSDAGFQDRYVVQEVIKEMAKNRPIDTKG---------------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (354)
Q Consensus 96 ~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------------~~~~~viiiDE~-d~l~~~~~~~Ll 151 (354)
-+- +......+....++.++++.....+.... ..+.+++|+||+ --|++...+.|+
T Consensus 101 iLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf 180 (501)
T COG3845 101 ILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF 180 (501)
T ss_pred hhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 111 11111223334555666665555442211 146789999998 568999999999
Q ss_pred HHHhhcc-CceeEEEEecCCCcccHHHhhhcceee-------ec---CCCHHHHHHHHH
Q 018543 152 RTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNIR-------IN---SPTEEQIVKVLE 199 (354)
Q Consensus 152 ~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i~-------~~---~~~~~~~~~~L~ 199 (354)
.++.... ....+|++|+....+ ..+.+|+.+++ +. ..+.+++.+.+-
T Consensus 181 ~~l~~l~~~G~tIi~ITHKL~Ev-~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMv 238 (501)
T COG3845 181 EILRRLAAEGKTIIFITHKLKEV-MAIADRVTVLRRGKVVGTVDPVAETTEEELAELMV 238 (501)
T ss_pred HHHHHHHHCCCEEEEEeccHHHH-HHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhc
Confidence 9997764 445677777665443 45667775444 22 335666666553
No 405
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.66 E-value=8.7e-08 Score=84.72 Aligned_cols=158 Identities=15% Similarity=0.200 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCce-------
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH------- 94 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 94 (354)
.+.+.-.++.|.. +.|.||+|+||||+++++++ +..+..+.+.+++............ ..+..+.+...
T Consensus 29 l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~-~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 29 VKPLSFTLREGQT--LAIIGENGSGKSTLAKMLAG-MIEPTSGELLIDDHPLHFGDYSYRS-QRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred eeeeeEEecCCCE--EEEEcCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCchhhHh-ccEEEEecCchhhcCcch
Confidence 3444444555554 99999999999999999998 5677778777776543200000000 00111111000
Q ss_pred -----eeeCCC-CCCCcc---hhHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543 95 -----VELSPS-DAGFQD---RYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (354)
Q Consensus 95 -----i~~~~~-~~~~~~---~~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (354)
+.+... ...... ...+.+.++.+.- ..+..+|+ ..+++++++||+ ..|++..
T Consensus 105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 000000 000000 0112223322211 01111221 147899999997 7899999
Q ss_pred HHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 147 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
...+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 185 ~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l 223 (267)
T PRK15112 185 RSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVM 223 (267)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 9999998877532 455666666654 344555665443
No 406
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.66 E-value=6.5e-08 Score=86.56 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=37.1
Q ss_pred cCCCCCCCcccC----HHHHHHHHHHHhc---C-CCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 7 YRPKTLDQVIVH----QDIAQNLKKLVTE---Q-DCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 7 yrP~~~~~~~g~----~~~~~~l~~~l~~---~-~~~~~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
+...+|+++... ..+......++.. + ...+++|+||+|+|||+++.++++++..
T Consensus 121 ~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 121 LLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred HhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445678877643 2333444555553 2 2335999999999999999999998853
No 407
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.66 E-value=7.6e-08 Score=85.19 Aligned_cols=54 Identities=6% Similarity=0.065 Sum_probs=38.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+. ...+.+|+.+
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~-~~~~~d~v~~ 216 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE-VLSIADHAYI 216 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhhCEEEE
Confidence 47899999997 88999999999999877532 4566666666443 3444555543
No 408
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.66 E-value=1.1e-07 Score=80.08 Aligned_cols=136 Identities=20% Similarity=0.272 Sum_probs=75.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc-----cccCceeeeCCCCCCCcchhHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT-----LSSANHVELSPSDAGFQDRYVVQ 111 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~i~ 111 (354)
+-|.|++|+||||+.+.+++ ++.|+.+.+.+++....+ ++... .+..+.+.+...-.|... ..++
T Consensus 56 vGiiG~NGaGKSTLlkliaG-i~~Pt~G~v~v~G~v~~l--------i~lg~Gf~pelTGreNi~l~~~~~G~~~-~ei~ 125 (249)
T COG1134 56 VGIIGHNGAGKSTLLKLIAG-IYKPTSGKVKVTGKVAPL--------IELGAGFDPELTGRENIYLRGLILGLTR-KEID 125 (249)
T ss_pred EEEECCCCCcHHHHHHHHhC-ccCCCCceEEEcceEehh--------hhcccCCCcccchHHHHHHHHHHhCccH-HHHH
Confidence 88999999999999999998 788998888887764420 01110 111111222211112211 1122
Q ss_pred HHHHH---HHhcCC-----C-------------CCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhc-cCceeEEEEec
Q 018543 112 EVIKE---MAKNRP-----I-------------DTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCN 168 (354)
Q Consensus 112 ~~~~~---~~~~~~-----~-------------~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~ 168 (354)
+..++ |++... + ..+..-++.|++|||+ ..-++..++.-.+.|.+. ..+..+|++++
T Consensus 126 ~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSH 205 (249)
T COG1134 126 EKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSH 205 (249)
T ss_pred HHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 22222 222211 1 1112357899999997 555777666666666555 44555666555
Q ss_pred CCCcccHHHhhhcce
Q 018543 169 SSSKVTEAIRSRCLN 183 (354)
Q Consensus 169 ~~~~l~~~l~sR~~~ 183 (354)
+. .....+++|+..
T Consensus 206 d~-~~I~~~Cd~~i~ 219 (249)
T COG1134 206 DL-GAIKQYCDRAIW 219 (249)
T ss_pred CH-HHHHHhcCeeEE
Confidence 54 444566666643
No 409
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.66 E-value=4.4e-08 Score=85.12 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=40.0
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+.+ + ..+|+.+
T Consensus 156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~-~-~~d~v~~ 209 (238)
T cd03249 156 RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTI-R-NADLIAV 209 (238)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-h-hCCEEEE
Confidence 47899999997 7899999999999997765556677777776544 3 4566543
No 410
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.65 E-value=3.1e-06 Score=74.88 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=75.2
Q ss_pred ceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcce--eeecCCC
Q 018543 131 FKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPT 190 (354)
Q Consensus 131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~~--i~~~~~~ 190 (354)
..-+++||+..|++..|..|++.+.+.. -++++|++|..+- ++-+.+--|..+ +++||+-
T Consensus 294 gGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLR 373 (511)
T COG3283 294 GGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLR 373 (511)
T ss_pred CCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccc
Confidence 3578999999999999999999996532 3466777665542 455566666655 4455543
Q ss_pred H--HH----HHHHHHHHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhc
Q 018543 191 E--EQ----IVKVLEFIAKKEGL---QLPSGFATRLAEK-SNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 191 ~--~~----~~~~L~~~~~~~~~---~i~~~~l~~i~~~-s~gd~R~ai~~L~~~~~~ 238 (354)
+ ++ ....+++++++.|+ .++++.+..+..+ ..||+|+.-|.+=.++..
T Consensus 374 er~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~ 431 (511)
T COG3283 374 ERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTL 431 (511)
T ss_pred cCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 2 12 33456677777776 4678888888774 689999999987766543
No 411
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.65 E-value=1e-07 Score=83.25 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=39.5
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+......+|+++++.+ ....+.+|+.++
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~-~~~~~~d~i~~l 216 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQ-QAARISDRTAFF 216 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHH-HHHHhCCEEEEE
Confidence 47899999998 78999999999999977655555666666554 444555665443
No 412
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.1e-07 Score=83.04 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=73.2
Q ss_pred CceEEEEeCCCcCC------------HHHHHHHHHHHhhcc--------CceeEEEEec------CCCcccHHHhhhcc-
Q 018543 130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYS--------ASCRLILCCN------SSSKVTEAIRSRCL- 182 (354)
Q Consensus 130 ~~~viiiDE~d~l~------------~~~~~~Ll~~le~~~--------~~~~~Il~~~------~~~~l~~~l~sR~~- 182 (354)
+..||||||+|.+. ...|..|+.++|... .+-.+.|++. .|+.++|.++-|+-
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 56799999999772 235778888887532 2233455543 46789999999985
Q ss_pred eeeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHH
Q 018543 183 NIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETC 235 (354)
Q Consensus 183 ~i~~~~~~~~~~~~~L~~-----------~~~~~~~--~i~~~~l~~i~~~s--------~gd~R~ai~~L~~~ 235 (354)
.+++.+++.++..++|.. .+.-+|+ .+++++++.||+.+ +=..|+.-..|+.+
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 599999999999999843 1223555 56799999888853 11355655555543
No 413
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.64 E-value=9.3e-07 Score=93.47 Aligned_cols=197 Identities=14% Similarity=0.207 Sum_probs=101.7
Q ss_pred CCCCCCcccCHHHHHHHHHHHhcC--CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
+..+++++|.+...+.+..++.-+ ....+.++||+|+||||+|+++++.+...-.+.+.++...+. . ..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~---~------~~ 250 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS---K------SM 250 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc---c------ch
Confidence 346889999988888888887532 222389999999999999999988764332222211110000 0 00
Q ss_pred cccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCC--------CCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc
Q 018543 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDT--------KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (354)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~ 158 (354)
.... ...+.+..... ...++++..+........ ....++-+||+|+++. ....+.|....+...
T Consensus 251 ~~~~-----~~~~~~~~~~~-~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~ 322 (1153)
T PLN03210 251 EIYS-----SANPDDYNMKL-HLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFG 322 (1153)
T ss_pred hhcc-----cccccccchhH-HHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCC
Confidence 0000 00000000000 001111111111110000 0123456889999974 344455554333334
Q ss_pred CceeEEEEecCCCcccHHHhhh-cceeeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Q 018543 159 ASCRLILCCNSSSKVTEAIRSR-CLNIRINSPTEEQIVKVLEFIAKKEGLQLP--SGFATRLAEKSNRSL 225 (354)
Q Consensus 159 ~~~~~Il~~~~~~~l~~~l~sR-~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~--~~~l~~i~~~s~gd~ 225 (354)
.+.++|++|++..-+ .. .. ..++.++.++.++....+.+.+-+....-+ .+....+++.++|-+
T Consensus 323 ~GsrIIiTTrd~~vl-~~--~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 323 SGSRIIVITKDKHFL-RA--HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP 389 (1153)
T ss_pred CCcEEEEEeCcHHHH-Hh--cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 456777777764321 11 11 246888899999888888876643322211 234566777887754
No 414
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.64 E-value=5.5e-08 Score=95.89 Aligned_cols=124 Identities=17% Similarity=0.266 Sum_probs=75.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC------------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------ 104 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------ 104 (354)
+.+.||+|+||||+++.+++ ++ +..+.+.+++.+.. ++....-.+.+.+.+++.-.
T Consensus 379 vaIvG~SGsGKSTL~~lL~g-~~-p~~G~I~i~g~~i~----------~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g 446 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLG-FL-PYQGSLKINGIELR----------ELDPESWRKHLSWVGQNPQLPHGTLRDNVLLG 446 (588)
T ss_pred EEEECCCCCCHHHHHHHHhc-CC-CCCcEEEECCEecc----------cCCHHHHHhheEEecCCCcCCCcCHHHHhhcC
Confidence 99999999999999999998 45 77888888876543 11100001122222222111
Q ss_pred ---cchhHHHHHHHHH------HhcC----------CCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 105 ---QDRYVVQEVIKEM------AKNR----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 105 ---~~~~~i~~~~~~~------~~~~----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
.....+.+.++.. ...+ ...+|+ -.+++|+++||+ ..++.+....+.+
T Consensus 447 ~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~ 526 (588)
T PRK11174 447 NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ 526 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 1111222222221 1110 001221 147899999998 7899999888888
Q ss_pred HHhhccCceeEEEEecCCCc
Q 018543 153 TMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 153 ~le~~~~~~~~Il~~~~~~~ 172 (354)
.+.+..++..+|++|++.+.
T Consensus 527 ~l~~~~~~~TvIiItHrl~~ 546 (588)
T PRK11174 527 ALNAASRRQTTLMVTHQLED 546 (588)
T ss_pred HHHHHhCCCEEEEEecChHH
Confidence 88877666778888888743
No 415
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.64 E-value=9.1e-08 Score=84.20 Aligned_cols=55 Identities=7% Similarity=0.088 Sum_probs=38.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+++.+.+... +..+|+++++ ....+.+.+|+.++
T Consensus 160 ~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~-~~~i~~~~d~i~~l 216 (264)
T PRK13546 160 VNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN-LGQVRQFCTKIAWI 216 (264)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC-HHHHHHHcCEEEEE
Confidence 47899999998 68999999899998876543 3445555555 44445566666443
No 416
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.64 E-value=1.6e-07 Score=81.79 Aligned_cols=55 Identities=11% Similarity=0.223 Sum_probs=40.5
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++..+..+.+.+.+......+|+++++.+ ..+.+.+|+.++
T Consensus 160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 215 (242)
T TIGR03411 160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME-FVRSIADKVTVL 215 (242)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 47899999998 78999999999999987655555666666544 445566666443
No 417
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.64 E-value=8e-08 Score=83.44 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+.+ . ..+|+.
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~-~~d~v~ 207 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-K-NADRII 207 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-H-hCCEEE
Confidence 47899999998 7899999999999997765556677777776543 3 245543
No 418
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.64 E-value=1.3e-07 Score=77.71 Aligned_cols=149 Identities=15% Similarity=0.275 Sum_probs=83.7
Q ss_pred CCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC-----cccccccccccccCCCcccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA-----EKVKVENKTWKIDAGSRNIDLE 85 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 85 (354)
.++-.+|..++.+.+.--+..+.. .-|.||+||||||+.|++-+ +....+ +.+.+++.++. .+. ++
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~V--TAlIGPSGcGKST~LR~lNR-mndl~~~~r~~G~v~~~g~ni~--~~~----~d 82 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNKV--TALIGPSGCGKSTLLRCLNR-MNDLIPGARVEGEVLLDGKNIY--DPK----VD 82 (253)
T ss_pred ceeEEECchhhhccCceeccCCce--EEEECCCCcCHHHHHHHHHh-hcccCcCceEEEEEEECCeecc--CCC----CC
Confidence 455567888887777766665555 67999999999999999977 444332 44555555443 111 01
Q ss_pred ccccccCceeee-----CCCCC-------------CCcchhHHHHHHHHH-------------HhcCCCCCCCC------
Q 018543 86 LTTLSSANHVEL-----SPSDA-------------GFQDRYVVQEVIKEM-------------AKNRPIDTKGK------ 128 (354)
Q Consensus 86 ~~~~~~~~~i~~-----~~~~~-------------~~~~~~~i~~~~~~~-------------~~~~~~~~~~~------ 128 (354)
...+. ..+.+ +|... +..+ ..+.++++.. ....+..+++.
T Consensus 83 ~~~lR--r~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc 159 (253)
T COG1117 83 VVELR--RRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHH--HHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH
Confidence 11100 00111 11111 1111 1122222211 11122233322
Q ss_pred ------CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 ------RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ------~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
-++.|+++||+ ..|++-+...+-.++.+......+|++|++..
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq 209 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ 209 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence 36899999997 77888777777777766667777888887764
No 419
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.63 E-value=6.2e-08 Score=95.44 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=80.7
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCce---------
Q 018543 24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH--------- 94 (354)
Q Consensus 24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 94 (354)
.+.-.++.|+. +.+.||+|+||||+++.+++ ++.+..+.+.+++.+...-...... -.+..+.+..+
T Consensus 361 ~i~l~i~~G~~--~aIvG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~~~-~~i~~v~Q~~~lf~~Ti~~N 436 (582)
T PRK11176 361 NINFKIPAGKT--VALVGRSGSGKSTIANLLTR-FYDIDEGEILLDGHDLRDYTLASLR-NQVALVSQNVHLFNDTIANN 436 (582)
T ss_pred CceEEeCCCCE--EEEECCCCCCHHHHHHHHHh-ccCCCCceEEECCEEhhhcCHHHHH-hhceEEccCceeecchHHHH
Confidence 33333344443 99999999999999999998 7788888888888654310000000 01111111111
Q ss_pred eeeCCCCCCCcchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CcCCHH
Q 018543 95 VELSPSDAGFQDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSRE 145 (354)
Q Consensus 95 i~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~~~ 145 (354)
+.+... ...+...+.+.++.. ....|. .+++ -.+++++++||+ ..|+++
T Consensus 437 i~~~~~--~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~ 514 (582)
T PRK11176 437 IAYART--EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_pred HhcCCC--CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 111000 001112233333221 111111 1121 147899999998 789999
Q ss_pred HHHHHHHHHhhccCceeEEEEecCCC
Q 018543 146 AQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 146 ~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
....+.+.+.+...+..+|++|++++
T Consensus 515 t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 515 SERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecchH
Confidence 98889998877666678888888863
No 420
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.63 E-value=1.2e-07 Score=83.43 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=40.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcceee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++. ...+.+.+|+.++.
T Consensus 169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~ 226 (257)
T PRK10619 169 MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLH 226 (257)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEE
Confidence 47899999997 78999999999998877543 34555555554 44556667765443
No 421
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.63 E-value=5.9e-08 Score=81.27 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=33.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCC
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 171 (354)
.+++++++||+ ..|++..+..+.+.+.+... +..+|+++++.+
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 144 MRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 57899999997 88999999999999876533 456777777654
No 422
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.63 E-value=9.6e-08 Score=83.74 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=39.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+. ...+.+|+.++
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l 220 (252)
T TIGR03005 163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF-AREFADRVCFF 220 (252)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEEEE
Confidence 47899999998 78999999999998876532 4566777666543 34555665443
No 423
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.1e-06 Score=82.82 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=90.8
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 115 (354)
.+|++|+|||||||+++++|.++--+ ...++|..+. .+..+. ........+.
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h---~~evdc~el~------------------------~~s~~~-~etkl~~~f~ 484 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLH---LLEVDCYELV------------------------AESASH-TETKLQAIFS 484 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCc---eEeccHHHHh------------------------hcccch-hHHHHHHHHH
Confidence 39999999999999999999987211 1222222111 111111 1122223332
Q ss_pred HHHhcCCCCCCCCCCceEEEEeCCCcCC--------HHHHHHHHHHHh--hc---cCceeEEEEecCCCcccHHHhhhcc
Q 018543 116 EMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQHSLRRTME--KY---SASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~--------~~~~~~Ll~~le--~~---~~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.... ..+.||++-..|-+. ...+..+...+. .. ..++.+|.+++..+.+++.+++-+.
T Consensus 485 ~a~~---------~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~ 555 (953)
T KOG0736|consen 485 RARR---------CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFL 555 (953)
T ss_pred HHhh---------cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhh
Confidence 2222 244677777766552 223344444443 12 2456677788888999999999874
Q ss_pred -eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 018543 183 -NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR 223 (354)
Q Consensus 183 -~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~g 223 (354)
.|.++.+++++..++|+.......+. ++..+..++..+.|
T Consensus 556 ~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 556 HEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSG 596 (953)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCC
Confidence 69999999999999999888755432 12334555555444
No 424
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.62 E-value=1e-07 Score=83.09 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=37.7
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHH-hhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l-~sR~~ 182 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+.+ ..+ .+|+.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~-~~~~~d~i~ 216 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLL-NYIKPDYVH 216 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH-HhhcCCeEE
Confidence 47899999998 78999999999999977643 35566666665433 333 45543
No 425
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.62 E-value=1.4e-07 Score=81.41 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=38.7
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 142 ~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 199 (230)
T TIGR02770 142 LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVM 199 (230)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 47899999998 78999999999888876543 345666665544 445556665443
No 426
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=8.7e-08 Score=85.38 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=40.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+...+..+.+.+.+... +..+|++|++.+.+ . +.+|+.++
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~-~~d~i~~l 216 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-N-MADQVLVL 216 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence 57899999997 88999999999999876542 45677777776654 3 46676444
No 427
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=1.2e-07 Score=84.67 Aligned_cols=160 Identities=17% Similarity=0.309 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC-CCc--cccccccccccC------
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSR--NIDLELTTLSSA------ 92 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~------ 92 (354)
.+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++....... +.. .....+..+.+.
T Consensus 23 l~~vsl~i~~Ge~--~~iiG~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 23 LDNISFELEEGSF--VALVGHTGSGKSTLMQHFNA-LLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred eeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 3444444555554 89999999999999999998 66788888888876542000 000 000000000000
Q ss_pred -----ceeeeCCCCCCCcc---hhHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHH
Q 018543 93 -----NHVELSPSDAGFQD---RYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSRE 145 (354)
Q Consensus 93 -----~~i~~~~~~~~~~~---~~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~ 145 (354)
+.+.+.....+... ...+.+.++.+.- ..+..+|+ ..+++++++||+ ..|++.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 00000000000000 0012222222211 11111221 147899999997 889999
Q ss_pred HHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcceee
Q 018543 146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 146 ~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
.+..+.+.+.+... +..+|++|++ ......+.+|+.+++
T Consensus 180 ~~~~l~~~l~~l~~~g~tvlivsH~-~~~~~~~~d~v~~l~ 219 (287)
T PRK13641 180 GRKEMMQLFKDYQKAGHTVILVTHN-MDDVAEYADDVLVLE 219 (287)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEE
Confidence 99999999977643 3445555554 444556677765443
No 428
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.61 E-value=1.2e-07 Score=81.29 Aligned_cols=54 Identities=13% Similarity=0.349 Sum_probs=39.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+...+..+.+.+.+.. .+..+|+++++.+ + ..+.+|+.++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~-~~~~d~v~~l 214 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-I-LDVADRIVHM 214 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H-HhhCCEEEEE
Confidence 57899999997 7899999999999987654 2466777777764 3 3455555443
No 429
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=1.4e-07 Score=82.80 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=39.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 170 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 227 (255)
T PRK11300 170 TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVV 227 (255)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 57899999997 88999999999999976533 455666666544 444555665443
No 430
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.61 E-value=1.2e-07 Score=81.71 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=36.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhh
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSR 180 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR 180 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++ ......+.+|
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~-~~~~~~~~d~ 218 (224)
T TIGR02324 166 ADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD-EEVRELVADR 218 (224)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcce
Confidence 47899999997 88999999999999977543 4456666665 4433444444
No 431
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.61 E-value=1.6e-07 Score=86.55 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=38.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++|+++||+ ..|++.....+.+.|.+... +..+|++|++.+. ...+.+|+.+
T Consensus 181 ~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e-~~~l~DrI~v 237 (382)
T TIGR03415 181 MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE-ALKIGNRIAI 237 (382)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 57899999997 88999999888888866432 4567777766543 3456666643
No 432
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.61 E-value=8.3e-08 Score=92.79 Aligned_cols=147 Identities=12% Similarity=0.188 Sum_probs=79.6
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+. ..... .. ....+.+.+++.
T Consensus 28 ~~vsl~i~~Ge~--~~liG~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~---~~----~~~~i~~v~q~~ 95 (510)
T PRK15439 28 KGIDFTLHAGEV--HALLGGNGAGKSTLMKIIAG-IVPPDSGTLEIGGNPCA--RLTPA---KA----HQLGIYLVPQEP 95 (510)
T ss_pred eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECC--CCCHH---HH----HhCCEEEEeccC
Confidence 334434445544 89999999999999999998 56677787777765432 00000 00 000011111111
Q ss_pred CCcc------------------hhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543 103 GFQD------------------RYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (354)
Q Consensus 103 ~~~~------------------~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (354)
.... ...+.+.++.+.-. ....+|+ ..+++++++||+ ..|++..
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~ 175 (510)
T PRK15439 96 LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAE 175 (510)
T ss_pred ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 1000 01122223222110 0001121 147899999998 8899999
Q ss_pred HHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcc
Q 018543 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 147 ~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
...+.+.|.+... +..+|+++++.+ ....+.+|+.
T Consensus 176 ~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~ 211 (510)
T PRK15439 176 TERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRIS 211 (510)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 9999998876543 344555555543 3445666654
No 433
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.60 E-value=1.1e-07 Score=86.46 Aligned_cols=55 Identities=11% Similarity=0.226 Sum_probs=39.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+++.+.+... +..+|++|++.+ ....+.+|+.++
T Consensus 117 ~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~-e~~~~~d~i~vl 174 (325)
T TIGR01187 117 FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE-EAMTMSDRIAIM 174 (325)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 47899999997 88999999999988876532 456777776654 334556665443
No 434
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.60 E-value=7.2e-08 Score=94.78 Aligned_cols=131 Identities=15% Similarity=0.275 Sum_probs=75.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccCceee-------eCCCCCCCcchh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSANHVE-------LSPSDAGFQDRY 108 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~-------~~~~~~~~~~~~ 108 (354)
+.+.||+|+||||+++.+++ ++.+..+.+.+++.+.. .-.... .-.+..+.+..++- +.....+..+..
T Consensus 361 v~IvG~sGsGKSTLl~lL~g-l~~~~~G~I~i~g~~i~--~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~ 437 (571)
T TIGR02203 361 VALVGRSGSGKSTLVNLIPR-FYEPDSGQILLDGHDLA--DYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRA 437 (571)
T ss_pred EEEECCCCCCHHHHHHHHHh-ccCCCCCeEEECCEeHH--hcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHH
Confidence 99999999999999999998 77888888888876543 000000 00011111111110 000000011111
Q ss_pred HHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC
Q 018543 109 VVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (354)
Q Consensus 109 ~i~~~~~~~-----~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~ 159 (354)
.+.+.++.+ ....| ..+|+ -.+++|+++||+ ..|++.....+.+.+.+..+
T Consensus 438 ~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~ 517 (571)
T TIGR02203 438 EIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ 517 (571)
T ss_pred HHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC
Confidence 233322221 11111 01221 147899999998 78999999999999987766
Q ss_pred ceeEEEEecCC
Q 018543 160 SCRLILCCNSS 170 (354)
Q Consensus 160 ~~~~Il~~~~~ 170 (354)
+..+|++|+++
T Consensus 518 ~~tiIiitH~~ 528 (571)
T TIGR02203 518 GRTTLVIAHRL 528 (571)
T ss_pred CCEEEEEehhh
Confidence 67788888876
No 435
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=1.2e-07 Score=84.45 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=38.5
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|++|++. .....+.+|+.+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~ 217 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYV 217 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEE
Confidence 47899999998 78999999999999876543 45566666554 344555666543
No 436
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.60 E-value=1.1e-07 Score=83.23 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=38.2
Q ss_pred CceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l 206 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLL 206 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 4599999997 88999999999999876543 455666666544 344566665443
No 437
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.60 E-value=5.9e-08 Score=80.85 Aligned_cols=155 Identities=15% Similarity=0.203 Sum_probs=92.0
Q ss_pred ccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (354)
Q Consensus 16 ~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (354)
+|.-++...+.-.++.|.+ +.+.||+|+||||+.++++. +..+..+.+.+++.+..-..+..+.. .-+
T Consensus 13 YG~~~~L~gvsl~v~~Gei--v~llG~NGaGKTTlLkti~G-l~~~~~G~I~~~G~dit~~p~~~r~r---------~Gi 80 (237)
T COG0410 13 YGKIQALRGVSLEVERGEI--VALLGRNGAGKTTLLKTIMG-LVRPRSGRIIFDGEDITGLPPHERAR---------LGI 80 (237)
T ss_pred ccceeEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeeEEECCeecCCCCHHHHHh---------CCe
Confidence 4444445555555666666 88999999999999999998 55666788888887665111111110 113
Q ss_pred eeCCCCCCCcchhHHHHHHHH---------------------HH------hcCCCCCCC------------CCCceEEEE
Q 018543 96 ELSPSDAGFQDRYVVQEVIKE---------------------MA------KNRPIDTKG------------KRGFKVLVL 136 (354)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~---------------------~~------~~~~~~~~~------------~~~~~viii 136 (354)
.+.|+........++.|.+.. |- ....-.+|+ ..+++++++
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 333333333332333332221 10 000001221 258899999
Q ss_pred eCC-CcCCHHHHHHHHHHHhhccCc-eeEEEEecCCCcccHHHhhhcc
Q 018543 137 NEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 137 DE~-d~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
||+ ..|.|...+.+.+.+.+.... ...|+...+.-+..-.+.+|..
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~y 208 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY 208 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEE
Confidence 998 789999888888888776532 4455555555555556667754
No 438
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.59 E-value=8.2e-08 Score=94.59 Aligned_cols=136 Identities=19% Similarity=0.338 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (354)
+.+.-.++.|+. +.+.||+|+||||+++.+++ ++.+..+.+.+++.+.. ++....-...+.+.+++.
T Consensus 352 ~~inl~i~~G~~--v~IvG~sGsGKSTLl~lL~g-l~~p~~G~I~i~g~~i~----------~~~~~~~r~~i~~v~Q~~ 418 (588)
T PRK13657 352 EDVSFEAKPGQT--VAIVGPTGAGKSTLINLLQR-VFDPQSGRILIDGTDIR----------TVTRASLRRNIAVVFQDA 418 (588)
T ss_pred cceeEEECCCCE--EEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEEhh----------hCCHHHHHhheEEEecCc
Confidence 333333344443 99999999999999999998 67888888888876443 110000011122222221
Q ss_pred CCc---------------chhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC
Q 018543 103 GFQ---------------DRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV 139 (354)
Q Consensus 103 ~~~---------------~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE~ 139 (354)
... ....+.+.++.. ....|. .+++ -.+++|+++||+
T Consensus 419 ~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEp 498 (588)
T PRK13657 419 GLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498 (588)
T ss_pred ccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 110 111122222211 000110 1221 147899999998
Q ss_pred -CcCCHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 140 -d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
..++++....+.+.+.+...+..+|++|++++
T Consensus 499 ts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~ 531 (588)
T PRK13657 499 TSALDVETEAKVKAALDELMKGRTTFIIAHRLS 531 (588)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHH
Confidence 78999999999998877655677888888864
No 439
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=1.3e-07 Score=83.84 Aligned_cols=156 Identities=17% Similarity=0.244 Sum_probs=82.4
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC-----------
Q 018543 24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------- 92 (354)
Q Consensus 24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 92 (354)
.+.-.++.|.. +.|.||+|+||||+++++++ +..+..+.+.+++.......+.......+..+.+.
T Consensus 20 ~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 96 (274)
T PRK13644 20 NINLVIKKGEY--IGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE 96 (274)
T ss_pred eeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHH
Confidence 33334444544 99999999999999999998 56777888887776442000000000000101000
Q ss_pred ceeeeCCCCCCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHH
Q 018543 93 NHVELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (354)
Q Consensus 93 ~~i~~~~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll 151 (354)
+.+.+.....+... ...+.+.++.+. ...+..+|+ ..+++++++||+ ..|++..+..++
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~ 176 (274)
T PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 00000000000000 001222222211 111111221 157899999997 889999999999
Q ss_pred HHHhhcc-CceeEEEEecCCCcccHHHhhhccee
Q 018543 152 RTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 152 ~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+.+.+.. .+..+|++|++.+.+ + ..+|+.++
T Consensus 177 ~~l~~l~~~g~til~~tH~~~~~-~-~~d~v~~l 208 (274)
T PRK13644 177 ERIKKLHEKGKTIVYITHNLEEL-H-DADRIIVM 208 (274)
T ss_pred HHHHHHHhCCCEEEEEecCHHHH-h-hCCEEEEE
Confidence 9997654 346677777776654 3 36666444
No 440
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.59 E-value=8.3e-08 Score=96.39 Aligned_cols=138 Identities=18% Similarity=0.327 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
.+.+.-.++.|+. +.+.||+|+||||+++.+++ ++.+..+.+.+++.+.. ++....-...+.+.+++
T Consensus 481 L~~i~l~i~~G~~--iaIvG~sGsGKSTLlklL~g-l~~p~~G~I~idg~~l~----------~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 481 LDNVSLTIRPGEK--VAIIGRIGSGKSTLLKLLLG-LYQPTEGSVLLDGVDIR----------QIDPADLRRNIGYVPQD 547 (694)
T ss_pred eeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEhh----------hCCHHHHHhccEEECCC
Confidence 3333334444443 99999999999999999998 77888888888876543 11100001112222222
Q ss_pred CCC---------------cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeC
Q 018543 102 AGF---------------QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNE 138 (354)
Q Consensus 102 ~~~---------------~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE 138 (354)
... .+...+.+.++.. -...|. .+|+ -.+++++++||
T Consensus 548 ~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE 627 (694)
T TIGR03375 548 PRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE 627 (694)
T ss_pred hhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111 0111122222211 001111 1121 14789999999
Q ss_pred C-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 139 ~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
+ ..++++....+.+.+.+..++..+|++|++.+.
T Consensus 628 ~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~ 662 (694)
T TIGR03375 628 PTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSL 662 (694)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8 889999999999988877666788888888753
No 441
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=1.8e-07 Score=83.61 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc---cccccccccccCc---e-
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTTLSSAN---H- 94 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~- 94 (354)
.+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.......... .....+..+.+.. .
T Consensus 22 l~~vsl~i~~Ge~--v~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 22 LFDIDLEVKKGSY--TALIGHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred eeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 3344444455554 99999999999999999998 66788888888776432000000 0000011111100 0
Q ss_pred -------eeeCCCCCCCcch---hHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHH
Q 018543 95 -------VELSPSDAGFQDR---YVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSRE 145 (354)
Q Consensus 95 -------i~~~~~~~~~~~~---~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~ 145 (354)
+.+.+...+.... ..+.+.++.+.- ..+..+++ ..+++++++||+ ..|++.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 0000000011000 112222222111 11111221 147899999998 789999
Q ss_pred HHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 146 ~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+..+.+.+.+... +..+|++|++. .....+.+|+.+
T Consensus 179 ~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~ 216 (288)
T PRK13643 179 ARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYL 216 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEE
Confidence 99999999876543 34555555554 444566677643
No 442
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=1.2e-07 Score=84.21 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=80.8
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccC-----------
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSA----------- 92 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------- 92 (354)
+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... ...... ...+..+.+.
T Consensus 26 v~l~i~~Ge~--~~I~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~i~--~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 26 VSFSITKGEW--VSIIGQNGSGKSTTARLIDG-LFEEFEGKVKIDGELLT--AENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEECC--cCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 3333444544 99999999999999999998 55777788877775432 100000 0000000000
Q ss_pred ceeeeCCCCCCCcch---hHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHH
Q 018543 93 NHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (354)
Q Consensus 93 ~~i~~~~~~~~~~~~---~~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll 151 (354)
+.+.+.....+.... ..+.+.++.+ ....+..+++ ..+++++++||+ ..|+...+..++
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~ 180 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 000000000000000 0112222211 1111111221 147899999998 789999999999
Q ss_pred HHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 152 ~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+.+.+... +..+|+++++.+.+ . ..+|+.+
T Consensus 181 ~~l~~l~~~~g~tiil~sH~~~~~-~-~~d~i~~ 212 (277)
T PRK13642 181 RVIHEIKEKYQLTVLSITHDLDEA-A-SSDRILV 212 (277)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHH-H-hCCEEEE
Confidence 99876543 45677777776654 3 3566543
No 443
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=1.3e-07 Score=84.24 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (354)
+.+.+.-.++.|.. +.|.||+|+||||+++++++ +..+..+.+.+++........... .+ ...+.+.++
T Consensus 21 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-l~~p~~G~i~i~g~~~~~~~~~~~---~~-----~~~ig~v~q 89 (283)
T PRK13636 21 ALKGININIKKGEV--TAILGGNGAGKSTLFQNLNG-ILKPSSGRILFDGKPIDYSRKGLM---KL-----RESVGMVFQ 89 (283)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCccEEEECCEECCCCcchHH---HH-----HhhEEEEec
Confidence 33444444555554 99999999999999999998 567778888887765420000000 00 001122111
Q ss_pred CC--------------------CCcch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-
Q 018543 101 DA--------------------GFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV- 139 (354)
Q Consensus 101 ~~--------------------~~~~~---~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~- 139 (354)
+. +.... ..+.+.++.+. ......+|+ ..+++++++||+
T Consensus 90 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt 169 (283)
T PRK13636 90 DPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT 169 (283)
T ss_pred CcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11 00000 01122211111 011111221 157899999997
Q ss_pred CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 140 d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
..|++..+..+.+.+.+... +..+|+++++.+. .+.+.+|..++
T Consensus 170 ~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~l 215 (283)
T PRK13636 170 AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFVM 215 (283)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 78999999999998876543 3455565555443 45566776443
No 444
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=2e-07 Score=80.76 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=38.8
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|+...+..+.+.+.+... ...+|+++++... .+.+.+|+.+
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~-~~~~~d~i~~ 202 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE-AWALADKVAI 202 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEE
Confidence 47899999998 78999999999998876532 4566666666543 3555566543
No 445
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.59 E-value=1.7e-07 Score=82.79 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 73 (354)
+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++...
T Consensus 28 ~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i 75 (265)
T TIGR02769 28 TNVSLSIEEGET--VGLLGRSGCGKSTLARLLLG-LEKPAQGTVSFRGQDL 75 (265)
T ss_pred eCceeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEc
Confidence 334444444544 99999999999999999998 5677778787776543
No 446
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.58 E-value=2e-07 Score=82.39 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=40.5
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..++......+.+.+.+...++.+|+++++.+.+ .. .+|+.++
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i-~~-~dri~vl 209 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAM-LE-CQRFLVI 209 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-Hh-CCEEEEe
Confidence 57899999998 7899998888888887655567788888887544 22 5666443
No 447
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3e-07 Score=74.12 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=79.1
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY 108 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (354)
+..|.. +.+.||+|+||||+.|.+|. +..++.+.+.+++.... ...... ..+.-+..-..+.+...
T Consensus 25 l~~Ge~--~~i~G~NG~GKTtLLRilaG-Ll~p~~G~v~~~~~~i~--~~~~~~---------~~~l~yLGH~~giK~eL 90 (209)
T COG4133 25 LNAGEA--LQITGPNGAGKTTLLRILAG-LLRPDAGEVYWQGEPIQ--NVRESY---------HQALLYLGHQPGIKTEL 90 (209)
T ss_pred EcCCCE--EEEECCCCCcHHHHHHHHHc-ccCCCCCeEEecCCCCc--cchhhH---------HHHHHHhhccccccchh
Confidence 344444 89999999999999999998 78888888887765433 000000 01122222233444444
Q ss_pred HHHHHHHHHHhcCCC------------------------CCCC------------CCCceEEEEeCC-CcCCHHHHHHHH
Q 018543 109 VVQEVIKEMAKNRPI------------------------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (354)
Q Consensus 109 ~i~~~~~~~~~~~~~------------------------~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll 151 (354)
++.|.+++....... .+|. .....+-|+||+ -.++++....|-
T Consensus 91 Ta~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~ 170 (209)
T COG4133 91 TALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170 (209)
T ss_pred hHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHH
Confidence 444444443321110 0110 135678999998 678999988888
Q ss_pred HHHhhcc-CceeEEEEecCCCccc
Q 018543 152 RTMEKYS-ASCRLILCCNSSSKVT 174 (354)
Q Consensus 152 ~~le~~~-~~~~~Il~~~~~~~l~ 174 (354)
..|.... ....++++|+.+..+.
T Consensus 171 ~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 171 ALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred HHHHHHhcCCCEEEEecCCccCCC
Confidence 8886654 4566666666665544
No 448
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=2.6e-07 Score=80.69 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=39.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+...+..+|++|++.+ ....+.+|+.++
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~-~~~~~~d~i~~l 214 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQ-QGKRVADYTAFF 214 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhCcEEEEE
Confidence 57899999998 78999999999999977654555666666554 334455665443
No 449
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.58 E-value=9.9e-08 Score=94.13 Aligned_cols=131 Identities=15% Similarity=0.259 Sum_probs=79.7
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc-
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD- 106 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 106 (354)
.++.|+. +.+.||+|+||||+++.+++ ++.++.+.+.+++.+.. ++....-.+++.+.+++....+
T Consensus 363 ~i~~Ge~--iaIvG~SGsGKSTLl~lL~g-l~~p~~G~I~idg~~i~----------~~~~~~l~~~i~~v~Q~~~lF~~ 429 (592)
T PRK10790 363 SVPSRGF--VALVGHTGSGKSTLASLLMG-YYPLTEGEIRLDGRPLS----------SLSHSVLRQGVAMVQQDPVVLAD 429 (592)
T ss_pred EEcCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEhh----------hCCHHHHHhheEEEccCCccccc
Confidence 3344443 99999999999999999998 77888888888886554 1111111122333333222111
Q ss_pred -------------hhHHHHHHHHHH-----hcCC-----------CCCCC------------CCCceEEEEeCC-CcCCH
Q 018543 107 -------------RYVVQEVIKEMA-----KNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSR 144 (354)
Q Consensus 107 -------------~~~i~~~~~~~~-----~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~ 144 (354)
...+.+.++... ...| ..+++ -.+++|+++||+ ..+++
T Consensus 430 Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~ 509 (592)
T PRK10790 430 TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS 509 (592)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 112222222211 0001 01121 146789999998 78999
Q ss_pred HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 145 EAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 145 ~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
+....+.+.+.+...+..+|++|++++
T Consensus 510 ~t~~~i~~~l~~~~~~~tvIivtHr~~ 536 (592)
T PRK10790 510 GTEQAIQQALAAVREHTTLVVIAHRLS 536 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 988888888877655677888888863
No 450
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.58 E-value=1.5e-07 Score=90.90 Aligned_cols=156 Identities=14% Similarity=0.144 Sum_probs=80.9
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA---------- 92 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 92 (354)
+.+.-.+..|.. +.|.||+|+||||+++++++ +..++.+.+.+++..+....+.......+..+.+.
T Consensus 21 ~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK10762 21 SGAALNVYPGRV--MALVGENGAGKSTMMKVLTG-IYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIA 97 (501)
T ss_pred eeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHH
Confidence 333334444544 89999999999999999998 55777788877775432100000000001111110
Q ss_pred ceeeeCCCC---CCCcch----hHHHHHHHHHHhcC-----CCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543 93 NHVELSPSD---AGFQDR----YVVQEVIKEMAKNR-----PIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (354)
Q Consensus 93 ~~i~~~~~~---~~~~~~----~~i~~~~~~~~~~~-----~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (354)
+.+.+.... .+.... ..+.++++.+.-.. +..+|+ ..+++++++||+ ..|++...
T Consensus 98 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 177 (501)
T PRK10762 98 ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177 (501)
T ss_pred HHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHH
Confidence 011110000 000000 12233333321110 011121 157899999997 88999999
Q ss_pred HHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcc
Q 018543 148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 148 ~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
..+.+.+.+... +..+|+++++. .....+.+|+.
T Consensus 178 ~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~ 212 (501)
T PRK10762 178 ESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVT 212 (501)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEE
Confidence 999888876533 34556655554 34455666654
No 451
>PRK13695 putative NTPase; Provisional
Probab=98.57 E-value=2.3e-06 Score=70.48 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=45.9
Q ss_pred CCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEEEEecCCC--cccHHHhhh--cceeeecCCCHHHHHHHHHHH
Q 018543 129 RGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSR--CLNIRINSPTEEQIVKVLEFI 201 (354)
Q Consensus 129 ~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~~--~l~~~l~sR--~~~i~~~~~~~~~~~~~L~~~ 201 (354)
.+++++++||+..+ +....+.+...++ .+..+|++++... ...+.+.+| +.++++.+-+.+++...+.++
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 35689999996543 4444556666663 2356788777643 456667766 467888887777776666543
No 452
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.57 E-value=3.3e-07 Score=80.76 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=39.8
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+++.+.+......+|++|++.+ ....+.+|+.++
T Consensus 173 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 228 (260)
T PRK10744 173 IRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQ-QAARCSDYTAFM 228 (260)
T ss_pred CCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 57899999997 78999999999999977654455666666654 344555665443
No 453
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=1.8e-07 Score=82.99 Aligned_cols=55 Identities=9% Similarity=0.183 Sum_probs=39.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++..+..+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l 210 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVM 210 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 57899999997 78999999999999977543 455666666644 444556666443
No 454
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.56 E-value=1.2e-07 Score=92.19 Aligned_cols=142 Identities=15% Similarity=0.233 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc-cccccccccccCce------
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLSSANH------ 94 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------ 94 (354)
.+.+.-.++.|+. +.+.||+|+||||+++.+++ ++.+..+.+.+++.+...-.... +. .+..+.+..+
T Consensus 338 l~~i~l~i~~G~~--~~ivG~sGsGKSTL~~ll~g-~~~~~~G~I~~~g~~i~~~~~~~lr~--~i~~v~Q~~~lf~~ti 412 (529)
T TIGR02857 338 LRPVSFTVPPGER--VALVGPSGAGKSTLLNLLLG-FVDPTEGSIAVNGVPLADADADSWRD--QIAWVPQHPFLFAGTI 412 (529)
T ss_pred ccceeEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEehhhCCHHHHHh--heEEEcCCCcccCcCH
Confidence 3334434444443 99999999999999999998 77888888888876543000000 00 0111111110
Q ss_pred ---eeeCCCCCCCcchhHHHHHHHHH------HhcC----------CCCCCC------------CCCceEEEEeCC-CcC
Q 018543 95 ---VELSPSDAGFQDRYVVQEVIKEM------AKNR----------PIDTKG------------KRGFKVLVLNEV-DKL 142 (354)
Q Consensus 95 ---i~~~~~~~~~~~~~~i~~~~~~~------~~~~----------~~~~~~------------~~~~~viiiDE~-d~l 142 (354)
+.+.. ... ....+.+.++.. ...+ ...+++ ..+++++++||+ ..+
T Consensus 413 ~~Ni~~~~--~~~-~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~l 489 (529)
T TIGR02857 413 AENIRLAR--PDA-SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL 489 (529)
T ss_pred HHHHhccC--CCC-CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 11100 000 111222222221 1100 011221 147899999998 789
Q ss_pred CHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 143 SREAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 143 ~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
+++....+.+.+.+...+..+|++|++.+
T Consensus 490 D~~~~~~i~~~l~~~~~~~t~i~itH~~~ 518 (529)
T TIGR02857 490 DAETEALVTEALRALAQGRTVLLVTHRLA 518 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 99999999998887666677888888863
No 455
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.56 E-value=1.1e-07 Score=95.36 Aligned_cols=143 Identities=22% Similarity=0.306 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc-cccccccccccCce-------
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLSSANH------- 94 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------- 94 (354)
+.+.-.++.|+ .+.+.||+|+||||+++.+++ ++.+..|.+.+++.+...-+... +. .+..+.+..+
T Consensus 474 ~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g-~~~p~~G~I~idg~~i~~~~~~~~r~--~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 474 SNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQR-LYTPQHGQVLVDGVDLAIADPAWLRR--QMGVVLQENVLFSRSIR 548 (694)
T ss_pred ccceEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEehhhCCHHHHHH--hCeEEccCCeehhhhHH
Confidence 33333344443 399999999999999999998 67888888888886543100000 00 0111111111
Q ss_pred --eeeCCCCCCCcchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CcCC
Q 018543 95 --VELSPSDAGFQDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLS 143 (354)
Q Consensus 95 --i~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~ 143 (354)
+.+. .... ....+.+.++.. ....|. .+++ ..+++++++||+ ..|+
T Consensus 549 eNi~~~--~~~~-~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD 625 (694)
T TIGR01846 549 DNIALC--NPGA-PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625 (694)
T ss_pred HHHhcC--CCCC-CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 1110 0011 111222222211 111110 1111 147899999998 8899
Q ss_pred HHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543 144 REAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (354)
Q Consensus 144 ~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 173 (354)
+.....+.+.+.+...+..+|++|++.+.+
T Consensus 626 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 655 (694)
T TIGR01846 626 YESEALIMRNMREICRGRTVIIIAHRLSTV 655 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCChHHH
Confidence 999999999998766667788888887543
No 456
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.56 E-value=1.8e-07 Score=84.92 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=82.3
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC--
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-- 102 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 102 (354)
+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... ..... +.... ...+.+.+++.
T Consensus 40 vsl~i~~Ge~--~~lvG~sGsGKSTLlk~i~G-l~~p~~G~I~~~G~~i~--~~~~~---~~~~~--r~~i~~v~Q~~~~ 109 (331)
T PRK15079 40 VTLRLYEGET--LGVVGESGCGKSTFARAIIG-LVKATDGEVAWLGKDLL--GMKDD---EWRAV--RSDIQMIFQDPLA 109 (331)
T ss_pred EEEEEcCCCE--EEEECCCCCCHHHHHHHHHC-CCCCCCcEEEECCEECC--cCCHH---HHHHH--hCceEEEecCchh
Confidence 3333444544 99999999999999999998 56777788888776543 10000 00000 00122221111
Q ss_pred CCc--------------------c----hhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-
Q 018543 103 GFQ--------------------D----RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV- 139 (354)
Q Consensus 103 ~~~--------------------~----~~~i~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~- 139 (354)
... . ...++++++.+. ...+..+|+ ..+++++|+||+
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt 189 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV 189 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 000 0 011222232211 111112221 157899999997
Q ss_pred CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 140 d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
..|+...+..+++.|.+... +..+|++|++. .....+.+|+.++
T Consensus 190 s~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl 235 (331)
T PRK15079 190 SALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVM 235 (331)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 78999999999888866532 45566666665 3444556666443
No 457
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=3.4e-07 Score=80.34 Aligned_cols=55 Identities=9% Similarity=0.169 Sum_probs=39.8
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.|.+...+..+|+++++.+ ....+.+|+.++
T Consensus 166 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 221 (253)
T PRK14267 166 MKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPA-QAARVSDYVAFL 221 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHH-HHHhhCCEEEEE
Confidence 57899999998 78999999999999977654555666666654 334555665443
No 458
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.55 E-value=3.1e-07 Score=81.43 Aligned_cols=52 Identities=6% Similarity=0.125 Sum_probs=37.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC 181 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~ 181 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+. ...+.+|+
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~-~~~~~d~v 212 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS-VTEFCDYT 212 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEE
Confidence 47899999997 88999999999999977543 4456666665543 33455554
No 459
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.55 E-value=6e-07 Score=75.59 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=42.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhc---cCceeEEEEecCCCcccHHHhhh
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSR 180 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~sR 180 (354)
.++.++|+||+ ..|+..+...|++.+++. +....+|++|++.+.+++-+-.+
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~ 243 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHR 243 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceE
Confidence 57899999996 899999998899988764 34577999999999888766544
No 460
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2.4e-07 Score=82.81 Aligned_cols=159 Identities=16% Similarity=0.255 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC---ccccccccccccC-------
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTTLSSA------- 92 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------- 92 (354)
+.+.-.++.|.. +.|.||+|+||||+++++++ +..+..+.+.+++......... ......+..+.+.
T Consensus 24 ~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 24 YDVNVSIPSGSY--VAIIGHTGSGKSTLLQHLNG-LLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred eeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 333334445544 99999999999999999998 5677778888877644200000 0000000011000
Q ss_pred ----ceeeeCCCCCCCcch---hHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543 93 ----NHVELSPSDAGFQDR---YVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (354)
Q Consensus 93 ----~~i~~~~~~~~~~~~---~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (354)
+.+.+.....+.... ..+.+.++.+.- ..+..+++ ..+++++++||+ ..|++..
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 000000000011000 112222322211 01111221 157899999998 7899999
Q ss_pred HHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcceee
Q 018543 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 147 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
+..+++.+.+... +..+|++|++.+ ....+.+|+.++.
T Consensus 181 ~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~ 220 (290)
T PRK13634 181 RKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH 220 (290)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 9999999877643 455666666654 4456677775543
No 461
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=1.2e-07 Score=83.23 Aligned_cols=55 Identities=7% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+......+|+++++.. ..+.+.+|+.++
T Consensus 170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~-~~~~~~d~v~~l 225 (257)
T PRK14246 170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ-QVARVADYVAFL 225 (257)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHH-HHHHhCCEEEEE
Confidence 57899999998 78999999999999977655566666666653 445556666443
No 462
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.55 E-value=1.7e-07 Score=92.18 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=36.8
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 173 (354)
.+++++++||+ ..++.+....+.+.+++...+..+|++|++.+.+
T Consensus 488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~ 533 (585)
T TIGR01192 488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTV 533 (585)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHH
Confidence 57899999998 7899999999999887765567788888887543
No 463
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.55 E-value=5e-07 Score=78.81 Aligned_cols=27 Identities=33% Similarity=0.685 Sum_probs=24.0
Q ss_pred CCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 33 DCPHLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 33 ~~~~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+..+++|+||||+|||+++-++++++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 334599999999999999999999985
No 464
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2.4e-07 Score=83.87 Aligned_cols=55 Identities=7% Similarity=0.155 Sum_probs=38.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+.. .+..+|++|++.+ ....+.+|+.++
T Consensus 193 ~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl 249 (320)
T PRK13631 193 IQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVM 249 (320)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 47899999997 8899999999988886643 3455666666654 334555665443
No 465
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.55 E-value=2.5e-07 Score=81.85 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|+...+..+.+.+++... +..+|+++++.+ ....+.+|+..
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~ 224 (268)
T PRK10419 168 VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMV 224 (268)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEE
Confidence 57899999998 78999999999998876542 455666666643 34445555543
No 466
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=2.7e-07 Score=82.36 Aligned_cols=159 Identities=17% Similarity=0.296 Sum_probs=84.5
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC-ccccccccccccCc-------
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELTTLSSAN------- 93 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------- 93 (354)
.+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++......... ......+..+.+..
T Consensus 23 l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 23 LDNVNIEIEDGEF--VGLIGHTGSGKSTLIQHLNG-LLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred eeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 3334444455554 99999999999999999998 6677888888877654300000 00000011111100
Q ss_pred ----eeeeCCCCCCCcch---hHHHHHHHHHHhc-------CCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543 94 ----HVELSPSDAGFQDR---YVVQEVIKEMAKN-------RPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (354)
Q Consensus 94 ----~i~~~~~~~~~~~~---~~i~~~~~~~~~~-------~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (354)
.+.+.....+.... ..+.+.++.+.-. .+..+++ ..+++++++||+ ..|++..
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 00000000011110 1123333332111 0111221 147899999998 7899999
Q ss_pred HHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 147 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+..+++.+.+... +..+|++|++.+ ....+.+|+.++
T Consensus 180 ~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l 218 (287)
T PRK13637 180 RDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVM 218 (287)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999977643 345666666543 444566776544
No 467
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.54 E-value=2.4e-07 Score=81.93 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=38.9
Q ss_pred CceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 172 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l 228 (272)
T PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAML 228 (272)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 7899999997 78999999999999977543 355666666654 345556665443
No 468
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=9e-07 Score=76.93 Aligned_cols=161 Identities=19% Similarity=0.248 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc------cccc---cccccccC
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR------NIDL---ELTTLSSA 92 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~ 92 (354)
.+.+.-.+..|.+ +-+.|.+|.||||++|++-. |-.|+.+.+.+++.+...-.... +.+. .++.+++.
T Consensus 22 l~~vsL~I~~GeI--~GIIG~SGAGKSTLiR~iN~-Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 22 LDDVSLEIPKGEI--FGIIGYSGAGKSTLLRLINL-LERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eccceEEEcCCcE--EEEEcCCCCcHHHHHHHHhc-cCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 3444445566665 88999999999999999875 88899999988886543100000 0000 00011111
Q ss_pred ce---eeeCCCCCCCcc---hhHHHHHHHHH-----HhcCCCCCCCC------------CCceEEEEeCC-CcCCHHHHH
Q 018543 93 NH---VELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKGK------------RGFKVLVLNEV-DKLSREAQH 148 (354)
Q Consensus 93 ~~---i~~~~~~~~~~~---~~~i~~~~~~~-----~~~~~~~~~~~------------~~~~viiiDE~-d~l~~~~~~ 148 (354)
.+ +-+...-.+... ...+.++++.+ +...|..+|+. .+|+|++.||+ ..|+|+.-+
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 11 111111111111 11233333322 22233334432 47899999998 789999888
Q ss_pred HHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcceee
Q 018543 149 SLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 149 ~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
.++..|.+.. .....|+.-+|...+...+++|..+++
T Consensus 179 sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~ 216 (339)
T COG1135 179 SILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD 216 (339)
T ss_pred HHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee
Confidence 8888875532 234444555566678888999875544
No 469
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.54 E-value=1.9e-07 Score=94.09 Aligned_cols=124 Identities=18% Similarity=0.269 Sum_probs=74.7
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC-----------
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF----------- 104 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------- 104 (354)
++.+.||+|+||||+++.+++ ++.+..+.+.+++.+.. ++....-...+.+.+++...
T Consensus 502 ~vaIvG~SGsGKSTLlklL~g-l~~p~~G~I~idg~~i~----------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l 570 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVG-FFQARSGEILLNGFSLK----------DIDRHTLRQFINYLPQEPYIFSGSILENLLL 570 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhc-cCCCCCcEEEECCEEHH----------HcCHHHHHHheEEEecCceehhHHHHHHHhc
Confidence 399999999999999999998 77888899998886544 11100000112222222111
Q ss_pred -----cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CcCCHHHHHHH
Q 018543 105 -----QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSL 150 (354)
Q Consensus 105 -----~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~~~~~~~L 150 (354)
.+...+.+.++.. ....|. .+++ -.+++++++||+ ..|+.+....+
T Consensus 571 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i 650 (708)
T TIGR01193 571 GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650 (708)
T ss_pred cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence 1111222222221 011111 1121 147899999998 78999988888
Q ss_pred HHHHhhccCceeEEEEecCCC
Q 018543 151 RRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 151 l~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.+.+. .+..+|++|++.+
T Consensus 651 ~~~L~~~-~~~T~IiitHr~~ 670 (708)
T TIGR01193 651 VNNLLNL-QDKTIIFVAHRLS 670 (708)
T ss_pred HHHHHHh-cCCEEEEEecchH
Confidence 8888765 3456788888875
No 470
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.54 E-value=4.9e-07 Score=79.15 Aligned_cols=55 Identities=9% Similarity=0.178 Sum_probs=39.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+......+|+++++.+ ....+.+|+.++
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~v~~l 218 (250)
T PRK14240 163 VEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQ-QASRISDKTAFF 218 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHH-HHHhhCCEEEEE
Confidence 47899999998 78999999999998877654455666666543 444555665433
No 471
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=4.4e-07 Score=79.41 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=40.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+......+|++|++.+ ....+.+|+.++
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~-~~~~~~d~i~~l 217 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQ-QARRISDRTAFF 217 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEE
Confidence 47899999997 78999999999999987655555666666543 445566666443
No 472
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.53 E-value=2.4e-07 Score=90.94 Aligned_cols=138 Identities=13% Similarity=0.263 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
.+.+.-.++.|+. +.+.||+|+||||+++.+++ ++.++.+.+.+++.+.. . +....-...+.+.+++
T Consensus 356 l~~i~~~i~~G~~--~aivG~sGsGKSTL~~ll~g-~~~p~~G~I~i~g~~i~--~--------~~~~~~r~~i~~v~Q~ 422 (574)
T PRK11160 356 LKGLSLQIKAGEK--VALLGRTGCGKSTLLQLLTR-AWDPQQGEILLNGQPIA--D--------YSEAALRQAISVVSQR 422 (574)
T ss_pred eecceEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEhh--h--------CCHHHHHhheeEEccc
Confidence 3334434444443 99999999999999999998 67888888888876543 1 0000000111121111
Q ss_pred CCC---------------cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeC
Q 018543 102 AGF---------------QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNE 138 (354)
Q Consensus 102 ~~~---------------~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE 138 (354)
... .....+.+.++.. ... |. .+++ -.+++++++||
T Consensus 423 ~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE 501 (574)
T PRK11160 423 VHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE 501 (574)
T ss_pred chhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 110 0111223333221 111 11 1121 14789999999
Q ss_pred C-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543 139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (354)
Q Consensus 139 ~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 173 (354)
+ ..++++....+.+.+.+...+..+|+++++++.+
T Consensus 502 ~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~ 537 (574)
T PRK11160 502 PTEGLDAETERQILELLAEHAQNKTVLMITHRLTGL 537 (574)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHH
Confidence 8 7899999999999998766667788888887543
No 473
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=1.1e-07 Score=91.36 Aligned_cols=51 Identities=25% Similarity=0.508 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 74 (354)
+.+.+.-.++.|+. +-+.||+|.||||++..+-+ ++.|..+.+.+|+.+..
T Consensus 483 Vlk~lsfti~pGe~--vALVGPSGsGKSTiasLL~r-fY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEV--VALVGPSGSGKSTIASLLLR-FYDPTSGRILLDGVPIS 533 (716)
T ss_pred hhcCceeeeCCCCE--EEEECCCCCCHHHHHHHHHH-hcCCCCCeEEECCeehh
Confidence 44555555555554 89999999999999999987 89999999999998766
No 474
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.53 E-value=3.1e-07 Score=80.36 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=38.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l 194 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCL 194 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 47899999998 88999999999888866532 355666666654 334455555433
No 475
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.53 E-value=1.3e-07 Score=95.23 Aligned_cols=136 Identities=18% Similarity=0.291 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
.+.+.-.++.|+ .+.+.||+|+||||+++.+++ ++.+..|.+.+++.+... +....-...+.+.+++
T Consensus 495 L~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~g-l~~p~~G~I~idg~~i~~----------~~~~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 495 IENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAG-LYQPWSGEILFDGIPREE----------IPREVLANSVAMVDQD 561 (710)
T ss_pred ccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEeHHH----------CCHHHHHhheeEEecC
Confidence 333433444443 399999999999999999998 778888989888865541 0000000112222211
Q ss_pred CCC---------------cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeC
Q 018543 102 AGF---------------QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNE 138 (354)
Q Consensus 102 ~~~---------------~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE 138 (354)
... .+...+.+.++.. ....|. ++|+ -.+++++++||
T Consensus 562 ~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE 641 (710)
T TIGR03796 562 IFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE 641 (710)
T ss_pred ChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC
Confidence 110 1111222322221 111111 1221 14789999999
Q ss_pred C-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 139 ~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
+ ..|+......+.+.+.+ .+..+|++|++.+.
T Consensus 642 ptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~ 674 (710)
T TIGR03796 642 ATSALDPETEKIIDDNLRR--RGCTCIIVAHRLST 674 (710)
T ss_pred ccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHH
Confidence 8 78999999999888876 35677888888643
No 476
>PHA02774 E1; Provisional
Probab=98.53 E-value=2.7e-07 Score=87.38 Aligned_cols=118 Identities=19% Similarity=0.280 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543 21 IAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (354)
....|+.+++...-.+ ++|+||||+|||+++.++++.+.+.. +. .+|.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~v----------i~---------------------fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKV----------IS---------------------FVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCE----------EE---------------------EEEC
Confidence 3466777775432223 99999999999999999999762111 00 0110
Q ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCc-CCHHHHHHHHHHHhhcc-------------CceeEEE
Q 018543 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYS-------------ASCRLIL 165 (354)
Q Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~Ll~~le~~~-------------~~~~~Il 165 (354)
... +. ..+ ..+.+++++||+-. ........|+.+|+..+ ..+++|+
T Consensus 469 ---~s~-----------Fw-Lqp-----l~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlII 528 (613)
T PHA02774 469 ---KSH-----------FW-LQP-----LADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLI 528 (613)
T ss_pred ---ccc-----------cc-cch-----hccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEE
Confidence 000 00 011 23448999999922 12334456777775432 2367888
Q ss_pred EecCCC---cccHHHhhhcceeeecCC
Q 018543 166 CCNSSS---KVTEAIRSRCLNIRINSP 189 (354)
Q Consensus 166 ~~~~~~---~l~~~l~sR~~~i~~~~~ 189 (354)
+||-.. .-...|.||+..++|+.+
T Consensus 529 TSN~d~~~~~~~~yL~sRi~~f~F~n~ 555 (613)
T PHA02774 529 TSNIDVKAEDRYKYLHSRITVFEFPNP 555 (613)
T ss_pred ecCCCcccchhhHHhhhhEEEEECCCC
Confidence 888543 345678999998888654
No 477
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.52 E-value=3.4e-07 Score=80.78 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|+...+..+.+.+.+... +..+|+++++.+. ...+.+|+.+
T Consensus 169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~~ 225 (262)
T PRK09984 169 QQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVA 225 (262)
T ss_pred cCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 47899999998 78999999999999977642 4556666666543 3455566543
No 478
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.52 E-value=6e-07 Score=78.89 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+.+. . .+|+.
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~-~-~dri~ 225 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTIL-D-ADLVL 225 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHH-h-CCEEE
Confidence 47899999997 78999999999998877555666777777776543 2 55553
No 479
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=3.4e-07 Score=81.93 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=39.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus 167 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l 224 (289)
T PRK13645 167 MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVM 224 (289)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 47899999997 88999999999998876532 455666666654 334555665443
No 480
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.52 E-value=1.8e-07 Score=93.81 Aligned_cols=136 Identities=18% Similarity=0.272 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (354)
.+.+.-.++.|+ .+.+.||+|+||||+++.+++ ++.+..+.+.+++.+.. ++....-...+.+.+++
T Consensus 469 L~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~g-l~~p~~G~I~idg~~i~----------~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 469 LDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLG-FETPESGSVFYDGQDLA----------GLDVQAVRRQLGVVLQN 535 (686)
T ss_pred eeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEEcC----------cCCHHHHHhccEEEccC
Confidence 333333344443 399999999999999999998 77888899988887554 11110011122222222
Q ss_pred CCCc--------------chhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC
Q 018543 102 AGFQ--------------DRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV 139 (354)
Q Consensus 102 ~~~~--------------~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE~ 139 (354)
.... +...+.+.++.. -...|. .+|+ -.+++++++||+
T Consensus 536 ~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEp 615 (686)
T TIGR03797 536 GRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEA 615 (686)
T ss_pred CccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2111 111222222221 001111 1121 147899999998
Q ss_pred -CcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 140 -d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
..|++.....+.+.+.+. ...+|++|++.+.
T Consensus 616 TS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~ 647 (686)
T TIGR03797 616 TSALDNRTQAIVSESLERL--KVTRIVIAHRLST 647 (686)
T ss_pred ccCCCHHHHHHHHHHHHHh--CCeEEEEecChHH
Confidence 789999988898888775 2567888887643
No 481
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=5e-07 Score=79.18 Aligned_cols=55 Identities=9% Similarity=0.152 Sum_probs=40.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+++......+|+++++.+ ..+.+.+|+.++
T Consensus 165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~-~~~~~~d~i~~l 220 (252)
T PRK14256 165 VKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQ-QAARVSDYTAFF 220 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHH-HHHhhCCEEEEE
Confidence 47899999997 88999999999999987755555666666544 444566666443
No 482
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.51 E-value=2.9e-07 Score=99.86 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=78.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHH-----
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ----- 111 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~----- 111 (354)
+.|.||+|+||||+.+++++ +..++.|.+.+++.... ..... ....+.+.++.....+..+++
T Consensus 1968 ~gLLG~NGAGKTTLlkmL~G-ll~ptsG~I~i~G~~i~--~~~~~---------~r~~IGy~pQ~~~L~~~LTv~E~L~l 2035 (2272)
T TIGR01257 1968 FGLLGVNGAGKTTTFKMLTG-DTTVTSGDATVAGKSIL--TNISD---------VHQNMGYCPQFDAIDDLLTGREHLYL 2035 (2272)
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECc--chHHH---------HhhhEEEEeccccCCCCCCHHHHHHH
Confidence 88999999999999999998 55778888888776442 00000 001123322222111111111
Q ss_pred -----------------HHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 112 -----------------EVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 112 -----------------~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
++++.+. ......+++ .++++|+++||+ ..|++.....+.+.+.+
T Consensus 2036 ~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257 2036 YARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 1221110 111111121 157899999998 88999999999999977
Q ss_pred cc-CceeEEEEecCCCcccHHHhhhccee
Q 018543 157 YS-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 157 ~~-~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.. .+..+|++|++ ....+.+.+|..++
T Consensus 2116 l~~~g~TIILtTH~-mee~e~lcDrV~IL 2143 (2272)
T TIGR01257 2116 IIREGRAVVLTSHS-MEECEALCTRLAIM 2143 (2272)
T ss_pred HHhCCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 53 33445555554 44456777776544
No 483
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=3.9e-07 Score=80.64 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=40.0
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
.+++++++||+ ..|++.....+.+.+.+......+|+++++.+ ....+.+|..++.
T Consensus 171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 47899999998 78999999999999987654555666666543 3345555554444
No 484
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.51 E-value=7.2e-07 Score=78.87 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=39.0
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|+......+.+.|.+......+|+++++.+ ....+.+|+.+
T Consensus 180 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~-~~~~~~d~v~~ 234 (267)
T PRK14235 180 VSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ-QAARVSQRTAF 234 (267)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHH-HHHhhCCEEEE
Confidence 47899999997 88999999999999977655555666666644 33445555533
No 485
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.8e-07 Score=90.62 Aligned_cols=158 Identities=13% Similarity=0.164 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC---------
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA--------- 92 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 92 (354)
.+.+.-.+..|.. +.|.||+|+||||+++++++ +..++.+.+.+++..+....+.......+..+.+.
T Consensus 21 l~~vs~~i~~Ge~--~~liG~nGsGKSTLl~~i~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 97 (510)
T PRK09700 21 LKSVNLTVYPGEI--HALLGENGAGKSTLMKVLSG-IHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTV 97 (510)
T ss_pred eeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcH
Confidence 3444444455554 89999999999999999998 55677777777765432000000000001111000
Q ss_pred -ceeeeCCCC----CCC---cc---hhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCC
Q 018543 93 -NHVELSPSD----AGF---QD---RYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLS 143 (354)
Q Consensus 93 -~~i~~~~~~----~~~---~~---~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (354)
+.+.+.... .+. .. ...+.+.++.+.-. .+..+|+ ..+++++++||+ ..|+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD 177 (510)
T PRK09700 98 LENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT 177 (510)
T ss_pred HHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 011110000 000 00 01122333322111 0111221 157899999998 8899
Q ss_pred HHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543 144 REAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 144 ~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+.....+.+.+.+... +..+|+++++ ......+.+|+.+
T Consensus 178 ~~~~~~l~~~l~~l~~~g~tiiivsHd-~~~~~~~~d~v~~ 217 (510)
T PRK09700 178 NKEVDYLFLIMNQLRKEGTAIVYISHK-LAEIRRICDRYTV 217 (510)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEE
Confidence 9999999998876543 3445555554 4444556666543
No 486
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.50 E-value=5.7e-07 Score=78.90 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=39.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+...+..+|+++++.+ ....+.+|+.++
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~-~~~~~~d~v~~l 221 (253)
T PRK14242 166 VEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQ-QAARVSDVTAFF 221 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHH-HHHHhCCEEEEE
Confidence 47899999997 78999999999999977644445555555543 345556666444
No 487
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.50 E-value=4.4e-07 Score=77.38 Aligned_cols=53 Identities=6% Similarity=-0.028 Sum_probs=34.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+++++++||+ ..+++.....+.+.+.+......+|+++++.. ....+.+|+.
T Consensus 121 ~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~-~~~~~~d~i~ 174 (213)
T PRK15177 121 LPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR-LIKEHCHAFG 174 (213)
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH-HHHHhcCeeE
Confidence 47799999996 88888888888887643222234566655553 3444555553
No 488
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.50 E-value=2.2e-07 Score=91.10 Aligned_cols=142 Identities=15% Similarity=0.274 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccCce-------
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSANH------- 94 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------- 94 (354)
+.+.-.++.|. .+.+.||+|+||||+++.+++ ++.+..+.+.+++.+.. ...... ...+..+.+..+
T Consensus 332 ~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~i~~~g~~~~--~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 332 ENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQR-HFDVSEGDIRFHDIPLT--KLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred cCeeEEECCCC--EEEEECCCCCCHHHHHHHHhc-ccCCCCCEEEECCEEHh--hCCHHHHHhheEEEccCCeeccccHH
Confidence 33333344443 399999999999999999998 67888888888776543 100000 000111111111
Q ss_pred --eeeCCCCCCCcchhHHHHHHHH------HHhcC----------CCCCCC------------CCCceEEEEeCC-CcCC
Q 018543 95 --VELSPSDAGFQDRYVVQEVIKE------MAKNR----------PIDTKG------------KRGFKVLVLNEV-DKLS 143 (354)
Q Consensus 95 --i~~~~~~~~~~~~~~i~~~~~~------~~~~~----------~~~~~~------------~~~~~viiiDE~-d~l~ 143 (354)
+.+... .. ....+.+.++. +...+ ...+++ ..+++++++||+ ..++
T Consensus 407 ~Ni~~~~~--~~-~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 407 NNIALGRP--DA-TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred HHHhcCCC--CC-CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 111100 01 11122222221 11110 001121 147899999998 7799
Q ss_pred HHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 144 REAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 144 ~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
+.....+.+.+.+...+..+|+++++.+.
T Consensus 484 ~~~~~~i~~~l~~~~~~~tii~itH~~~~ 512 (569)
T PRK10789 484 GRTEHQILHNLRQWGEGRTVIISAHRLSA 512 (569)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecchhH
Confidence 99988898888776556678888887643
No 489
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=5.4e-07 Score=78.95 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=40.0
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+......+|++|++. .....+.+|+.++
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~-~~~~~~~d~v~~l 219 (251)
T PRK14270 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNM-QQASRVSDYTAFF 219 (251)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCH-HHHHHhcCEEEEE
Confidence 47899999997 8899999999999997765455566666654 3445566676443
No 490
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=6.1e-07 Score=78.58 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|+......+.+.+.+......+|+++++.+ ....+.+|+.+
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~-~~~~~~d~i~~ 217 (250)
T PRK14262 163 VEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIG-QAIRIADYIAF 217 (250)
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhCCEEEE
Confidence 47899999997 78999999999999977655555666666654 33455566543
No 491
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=6.4e-07 Score=78.58 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|+......+.+.+.+......+|+++++.+. .+.+.+|+.+
T Consensus 166 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~-~~~~~d~v~~ 220 (253)
T PRK14261 166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQ-AARVSDYTGF 220 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHH-HHhhCCEEEE
Confidence 47899999997 889999999999999776555556666665543 3445566543
No 492
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=6.2e-07 Score=78.96 Aligned_cols=55 Identities=9% Similarity=0.183 Sum_probs=40.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+...+..+|+++++.+ ....+.+|+.++
T Consensus 172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~-~~~~~~d~i~~l 227 (259)
T PRK14274 172 TNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQ-QAARVSDQTAFF 227 (259)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 47899999998 78999999999999987655556666666654 334455665443
No 493
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.50 E-value=1.4e-07 Score=90.82 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee-----
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV----- 95 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----- 95 (354)
+.+.+.-.+..|.. +.|.||+|+||||+++++++ +..++.+.+.+++............ ..+....+....
T Consensus 18 il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~G-~~~p~~G~i~~~~~~~~~~~~~~~~-~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 18 TLQLPSLTLNAGDS--WAFVGANGSGKSALARALAG-ELPLLSGERQSQFSHITRLSFEQLQ-KLVSDEWQRNNTDMLSP 93 (490)
T ss_pred ecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-cCCCCCceEEECCcccccCCHHHHH-HHhceeccCcchhhccc
Confidence 44445445555655 99999999999999999998 5566667666554322100000000 000000000000
Q ss_pred -----eeCCCCC---CCcchhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHH
Q 018543 96 -----ELSPSDA---GFQDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (354)
Q Consensus 96 -----~~~~~~~---~~~~~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (354)
.....+. +......+.+.++.+. ...+..+|+ ..+++++++||+ ..|++.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 173 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173 (490)
T ss_pred chhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 0000000 0000112233333321 111112221 147899999998 7899999999
Q ss_pred HHHHHhhccC-ceeEEEEecCCCcccHHHhhhc
Q 018543 150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC 181 (354)
Q Consensus 150 Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~ 181 (354)
+.+.+.+... +..+|+++++.+ ....+.+|.
T Consensus 174 l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v 205 (490)
T PRK10938 174 LAELLASLHQSGITLVLVLNRFD-EIPDFVQFA 205 (490)
T ss_pred HHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEE
Confidence 9999977543 345666665543 334555554
No 494
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=6.4e-07 Score=78.53 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=40.0
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+......+.+.+.+......+|+++++.+ ....+.+|+.++
T Consensus 165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14272 165 VEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH-QAARVSDTTSFF 220 (252)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 47899999997 78999999999999977655555666666554 445566666443
No 495
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=3.5e-07 Score=81.43 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc-c-ccccccccccCc-----
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-N-IDLELTTLSSAN----- 93 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~----- 93 (354)
+.+.+.-.+..|.. +.|.||+|+||||+++++++ +..+..+.+.+++.... .... . ....+..+.+..
T Consensus 25 vl~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~i~g~~i~--~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 25 ALDDVNLEVKKGEF--LVILGRNGSGKSTIAKHMNA-LLIPSEGKVYVDGLDTS--DEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEecc--ccccHHHHhhheEEEecChhhhhc
Confidence 33444444445544 89999999999999999998 55677788888776443 1000 0 000000110000
Q ss_pred ------eeeeCCCCCCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543 94 ------HVELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (354)
Q Consensus 94 ------~i~~~~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (354)
.+.+.....+... ...+.+.++.+. ...+..+|+ ..+++++++||+ ..|++..
T Consensus 100 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~ 179 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSG 179 (280)
T ss_pred cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 0000000001110 011222222211 111112221 157899999998 7899999
Q ss_pred HHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 147 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+..+++.+.+... +..+|+++++.+.+ .. .+|+.++
T Consensus 180 ~~~l~~~l~~l~~~~g~tillvtH~~~~~-~~-~d~v~~l 217 (280)
T PRK13633 180 RREVVNTIKELNKKYGITIILITHYMEEA-VE-ADRIIVM 217 (280)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecChHHH-hc-CCEEEEE
Confidence 9999999977532 45677777776654 33 5666443
No 496
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.49 E-value=2.1e-07 Score=91.65 Aligned_cols=145 Identities=14% Similarity=0.248 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee-----e-
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-----E- 96 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~- 96 (354)
+.+.-.++.|+. +.+.||+|+||||+++.+++ ++.+..+.+.+++.+...-.+... .-.+..+.+..++ .
T Consensus 357 ~~inl~i~~Ge~--i~IvG~sGsGKSTLlklL~g-l~~p~~G~I~i~g~~i~~~~~~~~-~~~i~~~~Q~~~lf~~Ti~~ 432 (576)
T TIGR02204 357 DGLNLTVRPGET--VALVGPSGAGKSTLFQLLLR-FYDPQSGRILLDGVDLRQLDPAEL-RARMALVPQDPVLFAASVME 432 (576)
T ss_pred cceeEEecCCCE--EEEECCCCCCHHHHHHHHHh-ccCCCCCEEEECCEEHHhcCHHHH-HHhceEEccCCccccccHHH
Confidence 333333444443 99999999999999999998 667888888887754430000000 0011111111100 0
Q ss_pred -eCCCCCCCcchhHHHHHHHHH------HhcC-CC---------CCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543 97 -LSPSDAGFQDRYVVQEVIKEM------AKNR-PI---------DTKG------------KRGFKVLVLNEV-DKLSREA 146 (354)
Q Consensus 97 -~~~~~~~~~~~~~i~~~~~~~------~~~~-~~---------~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (354)
+....... +...+.+.++.. ...+ .. .+++ ..+++++++||+ ..+++..
T Consensus 433 Ni~~~~~~~-~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 433 NIRYGRPDA-TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred HHhcCCCCC-CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 00000000 111222222211 1110 00 1111 146789999998 7889988
Q ss_pred HHHHHHHHhhccCceeEEEEecCCCc
Q 018543 147 QHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 147 ~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
...+.+.+.+..++..+|++|++++.
T Consensus 512 ~~~i~~~l~~~~~~~t~IiitH~~~~ 537 (576)
T TIGR02204 512 EQLVQQALETLMKGRTTLIIAHRLAT 537 (576)
T ss_pred HHHHHHHHHHHhCCCEEEEEecchHH
Confidence 88888888776556778888888743
No 497
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=6e-07 Score=79.39 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=39.6
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+.+......+|+++++.+ ....+.+|+.+
T Consensus 180 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 180 VKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCEEEE
Confidence 47899999997 78999999999999877655555666666554 44555666543
No 498
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.49 E-value=9.8e-07 Score=77.77 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=48.0
Q ss_pred CCCceEEEEeCCCcCCHH------HHHHHHHHHhhc------------cCceeEEEEecCCC---cccHHHhhhcceeee
Q 018543 128 KRGFKVLVLNEVDKLSRE------AQHSLRRTMEKY------------SASCRLILCCNSSS---KVTEAIRSRCLNIRI 186 (354)
Q Consensus 128 ~~~~~viiiDE~d~l~~~------~~~~Ll~~le~~------------~~~~~~Il~~~~~~---~l~~~l~sR~~~i~~ 186 (354)
.++.-|++|||++.-.++ ..+.|++.++.. -.++.+|.+++... .+.+.+.+.+.++.+
T Consensus 98 ~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~ 177 (272)
T PF12775_consen 98 GGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNI 177 (272)
T ss_dssp SSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE-
T ss_pred CCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEe
Confidence 356679999998754332 234556666431 13455776665432 478888888999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 018543 187 NSPTEEQIVKVLEFIAKK 204 (354)
Q Consensus 187 ~~~~~~~~~~~L~~~~~~ 204 (354)
+.|+.+.+..+...++..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999999988877653
No 499
>PLN03130 ABC transporter C family member; Provisional
Probab=98.49 E-value=9.2e-08 Score=103.27 Aligned_cols=146 Identities=14% Similarity=0.265 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (354)
+.+.+.-.++.|+. +-|+|++|+||||+++.+.+ ++.+..|.+.+|+.+.. ++....-...+.+.++
T Consensus 1254 VL~~is~~I~~Gek--VaIVGrSGSGKSTLl~lL~r-l~~p~~G~I~IDG~dI~----------~i~l~~LR~~IsiVpQ 1320 (1622)
T PLN03130 1254 VLHGLSFEISPSEK--VGIVGRTGAGKSSMLNALFR-IVELERGRILIDGCDIS----------KFGLMDLRKVLGIIPQ 1320 (1622)
T ss_pred eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-cCCCCCceEEECCEecc----------cCCHHHHHhccEEECC
Confidence 44445545555544 99999999999999999998 77888899999987654 1111111122333333
Q ss_pred CCCCc--------------chhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeC
Q 018543 101 DAGFQ--------------DRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNE 138 (354)
Q Consensus 101 ~~~~~--------------~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE 138 (354)
+.-.. ....+.+.++.. -...|. ++++ -.+++|+|+||
T Consensus 1321 dp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDE 1400 (1622)
T PLN03130 1321 APVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE 1400 (1622)
T ss_pred CCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 32111 111222222221 111111 1111 14679999999
Q ss_pred C-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhc
Q 018543 139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (354)
Q Consensus 139 ~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~ 181 (354)
+ -.++.+....+.+.+.+...++.+|+++++.+.+.. .+|+
T Consensus 1401 ATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~--~DrI 1442 (1622)
T PLN03130 1401 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRI 1442 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh--CCEE
Confidence 8 678888888888888776667889999998876543 3454
No 500
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=2.6e-07 Score=89.31 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC--CCcccccccccccccCCCccccccccccccC------
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGSRNIDLELTTLSSA------ 92 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 92 (354)
+.+.+.-.+..|.. +.|.||+|+||||+++++++ +..+ ..+.+.+++..+............+..+.+.
T Consensus 20 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 20 ALDNVSLKVRAGEI--VSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eecceeEEEeCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 33444444455544 89999999999999999998 4443 5777777765432000000000001111110
Q ss_pred ----ceeeeCCCCC--CCcch----hHHHHHHHHHHhcC-----CCCCCC------------CCCceEEEEeCC-CcCCH
Q 018543 93 ----NHVELSPSDA--GFQDR----YVVQEVIKEMAKNR-----PIDTKG------------KRGFKVLVLNEV-DKLSR 144 (354)
Q Consensus 93 ----~~i~~~~~~~--~~~~~----~~i~~~~~~~~~~~-----~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (354)
+.+.+..... +.... ..+.+.++.+.-.. ...+|+ ..+++++++||+ ..|++
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 1111110000 00010 12333333322110 001111 147899999998 78999
Q ss_pred HHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcc
Q 018543 145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 145 ~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.....+.+.+.+... +..+|+++++. .....+.+|+.
T Consensus 177 ~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~ 214 (506)
T PRK13549 177 SETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTIC 214 (506)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEE
Confidence 999999999876533 34455555554 34445556653
Done!