Query 018543
Match_columns 354
No_of_seqs 356 out of 3460
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 16:54:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_E Activator 1 40 kDa subu 100.0 1.7E-50 5.8E-55 371.6 35.1 342 1-345 2-353 (354)
2 1sxj_C Activator 1 40 kDa subu 100.0 4.8E-44 1.6E-48 326.6 28.3 311 1-347 13-333 (340)
3 3u61_B DNA polymerase accessor 100.0 3.1E-43 1.1E-47 319.3 30.8 298 1-345 14-321 (324)
4 2chq_A Replication factor C sm 100.0 1.8E-41 6.1E-46 306.8 27.5 308 1-344 5-316 (319)
5 1iqp_A RFCS; clamp loader, ext 100.0 2.1E-41 7.1E-46 307.4 26.2 309 1-345 13-325 (327)
6 1sxj_D Activator 1 41 kDa subu 100.0 4.1E-40 1.4E-44 302.1 26.7 311 1-343 25-352 (353)
7 1sxj_B Activator 1 37 kDa subu 100.0 2.8E-38 9.4E-43 286.4 26.8 306 1-344 9-319 (323)
8 1jr3_A DNA polymerase III subu 100.0 8.6E-36 2.9E-40 275.4 34.8 323 2-343 5-358 (373)
9 2gno_A DNA polymerase III, gam 100.0 2.5E-34 8.6E-39 256.4 20.9 279 17-344 1-297 (305)
10 1a5t_A Delta prime, HOLB; zinc 100.0 8.1E-32 2.8E-36 244.7 31.0 294 17-344 6-322 (334)
11 3pvs_A Replication-associated 100.0 2.3E-32 7.9E-37 256.1 22.1 273 2-347 15-300 (447)
12 2chg_A Replication factor C sm 100.0 3.8E-29 1.3E-33 213.8 23.9 207 1-239 5-211 (226)
13 1sxj_A Activator 1 95 kDa subu 100.0 1.2E-29 4.2E-34 243.1 17.7 311 1-347 27-384 (516)
14 1njg_A DNA polymerase III subu 100.0 5.9E-28 2E-32 209.2 21.3 223 2-239 12-235 (250)
15 1jr3_D DNA polymerase III, del 99.9 9.2E-28 3.2E-32 219.1 14.0 276 25-343 9-333 (343)
16 3pfi_A Holliday junction ATP-d 99.9 2.1E-24 7.3E-29 196.4 22.1 190 2-236 18-231 (338)
17 3uk6_A RUVB-like 2; hexameric 99.9 1.6E-24 5.4E-29 199.6 19.2 232 2-238 32-309 (368)
18 2c9o_A RUVB-like 1; hexameric 99.9 5.6E-24 1.9E-28 200.9 21.2 103 132-235 297-413 (456)
19 1hqc_A RUVB; extended AAA-ATPa 99.9 3E-23 1E-27 187.7 22.8 193 2-238 1-217 (324)
20 3bos_A Putative DNA replicatio 99.9 7.4E-23 2.5E-27 176.9 16.6 193 2-238 16-223 (242)
21 1in4_A RUVB, holliday junction 99.9 7.2E-22 2.5E-26 179.1 23.1 189 3-236 15-227 (334)
22 3vfd_A Spastin; ATPase, microt 99.9 1.2E-21 4E-26 181.5 22.5 192 2-234 104-327 (389)
23 3b9p_A CG5977-PA, isoform A; A 99.9 1.9E-21 6.7E-26 173.6 20.6 197 2-235 10-236 (297)
24 3syl_A Protein CBBX; photosynt 99.9 8E-22 2.7E-26 177.1 17.2 187 14-237 32-260 (309)
25 3eie_A Vacuolar protein sortin 99.9 8.6E-21 2.9E-25 171.3 20.7 195 2-233 7-229 (322)
26 2qp9_X Vacuolar protein sortin 99.9 1.1E-20 3.6E-25 172.7 20.3 195 2-233 40-262 (355)
27 1fnn_A CDC6P, cell division co 99.9 2.6E-20 8.8E-25 172.5 20.7 217 2-237 9-252 (389)
28 3te6_A Regulatory protein SIR3 99.9 2.5E-20 8.6E-25 165.7 19.3 196 23-237 34-284 (318)
29 3d8b_A Fidgetin-like protein 1 99.9 2.5E-20 8.7E-25 170.4 19.4 195 3-234 74-297 (357)
30 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.2E-19 4E-24 163.6 22.8 194 4-233 3-224 (322)
31 2zan_A Vacuolar protein sortin 99.8 6.4E-20 2.2E-24 172.3 20.1 196 3-234 124-347 (444)
32 3pxg_A Negative regulator of g 99.8 7.6E-21 2.6E-25 179.8 12.4 199 2-237 169-383 (468)
33 2z4s_A Chromosomal replication 99.8 8.8E-20 3E-24 171.1 19.5 196 7-238 98-312 (440)
34 2v1u_A Cell division control p 99.8 5E-20 1.7E-24 170.3 16.9 215 3-237 12-254 (387)
35 1ofh_A ATP-dependent HSL prote 99.8 2.9E-20 9.9E-25 166.8 14.8 194 13-236 15-270 (310)
36 1l8q_A Chromosomal replication 99.8 7E-20 2.4E-24 165.6 17.1 192 10-238 8-214 (324)
37 1lv7_A FTSH; alpha/beta domain 99.8 1.9E-19 6.4E-24 157.3 17.8 197 2-237 1-230 (257)
38 4fcw_A Chaperone protein CLPB; 99.8 4.7E-20 1.6E-24 165.7 14.3 201 13-237 17-276 (311)
39 2qby_B CDC6 homolog 3, cell di 99.8 1.1E-19 3.7E-24 168.1 16.8 218 2-239 12-252 (384)
40 4b4t_J 26S protease regulatory 99.8 5.1E-19 1.8E-23 160.9 20.7 181 5-223 140-352 (405)
41 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.6E-18 9E-23 150.3 23.4 193 9-238 2-228 (262)
42 2r44_A Uncharacterized protein 99.8 1.2E-18 4E-23 158.0 19.3 251 2-300 16-325 (331)
43 3h4m_A Proteasome-activating n 99.8 6.4E-19 2.2E-23 156.3 16.1 192 4-233 8-232 (285)
44 4b4t_I 26S protease regulatory 99.8 2E-18 6.7E-23 157.5 18.7 182 3-223 172-386 (437)
45 1jbk_A CLPB protein; beta barr 99.8 8.4E-20 2.9E-24 151.8 9.0 171 2-198 11-194 (195)
46 3pxi_A Negative regulator of g 99.8 4.2E-19 1.4E-23 177.8 14.5 199 2-237 169-383 (758)
47 4b4t_M 26S protease regulatory 99.8 2.9E-18 9.8E-23 158.3 18.2 182 4-223 172-385 (434)
48 4b4t_H 26S protease regulatory 99.8 6E-18 2E-22 155.8 20.2 189 4-230 200-424 (467)
49 4b4t_K 26S protease regulatory 99.8 7.6E-18 2.6E-22 155.4 20.0 181 5-223 164-377 (428)
50 4b4t_L 26S protease subunit RP 99.8 1E-17 3.4E-22 154.9 19.9 185 8-230 176-396 (437)
51 1qvr_A CLPB protein; coiled co 99.8 8.1E-19 2.8E-23 177.7 13.2 205 2-238 159-391 (854)
52 1g8p_A Magnesium-chelatase 38 99.8 6.7E-19 2.3E-23 160.7 11.3 230 4-237 15-300 (350)
53 2qby_A CDC6 homolog 1, cell di 99.8 2.5E-18 8.6E-23 158.7 15.2 216 3-237 13-250 (386)
54 2bjv_A PSP operon transcriptio 99.8 1.7E-17 6E-22 145.4 18.8 209 11-246 4-249 (265)
55 3cf0_A Transitional endoplasmi 99.8 8.5E-18 2.9E-22 150.1 15.9 181 5-223 7-219 (301)
56 2ce7_A Cell division protein F 99.8 2E-17 6.9E-22 155.1 18.4 195 3-236 5-233 (476)
57 3pxi_A Negative regulator of g 99.8 1.3E-17 4.4E-22 167.1 18.0 185 13-235 491-720 (758)
58 1r6b_X CLPA protein; AAA+, N-t 99.8 3.4E-18 1.2E-22 171.4 13.5 209 2-237 175-407 (758)
59 3m6a_A ATP-dependent protease 99.8 1.6E-17 5.4E-22 159.6 16.5 195 13-236 81-312 (543)
60 1r6b_X CLPA protein; AAA+, N-t 99.8 2.7E-17 9.2E-22 164.9 18.8 197 13-236 458-712 (758)
61 2p65_A Hypothetical protein PF 99.8 1E-18 3.6E-23 144.5 7.1 157 2-190 11-187 (187)
62 1um8_A ATP-dependent CLP prote 99.7 1.6E-17 5.4E-22 153.2 14.0 193 14-237 22-337 (376)
63 1qvr_A CLPB protein; coiled co 99.7 2.2E-17 7.4E-22 167.2 12.6 200 13-236 558-816 (854)
64 1ojl_A Transcriptional regulat 99.7 7.2E-16 2.5E-20 137.6 20.2 202 13-239 2-235 (304)
65 2r62_A Cell division protease 99.7 2.3E-18 7.8E-23 151.3 3.2 196 5-238 3-232 (268)
66 1d2n_A N-ethylmaleimide-sensit 99.7 1.1E-16 3.7E-21 140.9 14.0 181 13-237 33-247 (272)
67 3hu3_A Transitional endoplasmi 99.7 1.1E-16 3.9E-21 151.2 14.2 193 6-236 197-419 (489)
68 3k1j_A LON protease, ATP-depen 99.7 1.7E-16 5.9E-21 154.7 15.4 231 4-236 32-352 (604)
69 2dhr_A FTSH; AAA+ protein, hex 99.7 5.3E-16 1.8E-20 146.3 15.4 195 3-237 22-249 (499)
70 1ixz_A ATP-dependent metallopr 99.7 3.1E-15 1.1E-19 130.2 16.6 194 4-236 7-233 (254)
71 1iy2_A ATP-dependent metallopr 99.6 2.3E-14 7.8E-19 126.4 18.4 192 6-236 33-257 (278)
72 3cf2_A TER ATPase, transitiona 99.6 1.8E-15 6.1E-20 149.4 11.7 177 9-223 200-405 (806)
73 3hws_A ATP-dependent CLP prote 99.6 1.5E-15 5.2E-20 139.2 9.9 192 15-238 17-321 (363)
74 1w5s_A Origin recognition comp 99.6 1.5E-14 5E-19 134.8 14.4 213 5-236 17-270 (412)
75 3t15_A Ribulose bisphosphate c 99.6 1.1E-13 3.9E-18 122.7 18.1 154 36-225 38-220 (293)
76 1g41_A Heat shock protein HSLU 99.6 3.2E-14 1.1E-18 131.6 14.6 107 131-237 251-405 (444)
77 3cf2_A TER ATPase, transitiona 99.6 1.1E-14 3.6E-19 143.9 11.8 184 10-231 474-693 (806)
78 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 9.4E-14 3.2E-18 131.2 14.2 191 13-235 22-262 (500)
79 3ec2_A DNA replication protein 99.5 1E-13 3.5E-18 114.0 11.6 134 4-173 1-146 (180)
80 3n70_A Transport activator; si 99.5 1.2E-13 4E-18 109.5 11.0 132 14-189 2-144 (145)
81 2x8a_A Nuclear valosin-contain 99.5 6.6E-13 2.3E-17 116.5 16.2 176 7-219 4-210 (274)
82 3f9v_A Minichromosome maintena 99.4 1.5E-13 5.1E-18 133.2 7.9 159 13-203 295-491 (595)
83 3co5_A Putative two-component 99.4 2.5E-13 8.5E-18 107.3 7.8 128 14-189 5-142 (143)
84 1ypw_A Transitional endoplasmi 99.4 1.1E-12 3.6E-17 131.6 14.0 184 6-227 197-409 (806)
85 1ypw_A Transitional endoplasmi 99.4 3.2E-14 1.1E-18 142.6 1.5 161 7-204 471-663 (806)
86 2qen_A Walker-type ATPase; unk 99.4 3.1E-11 1.1E-15 109.5 18.4 213 8-233 7-247 (350)
87 1u0j_A DNA replication protein 99.3 4.2E-12 1.4E-16 109.2 11.0 135 22-210 90-258 (267)
88 3dzd_A Transcriptional regulat 99.3 6.5E-11 2.2E-15 108.2 17.3 191 13-238 129-360 (368)
89 2kjq_A DNAA-related protein; s 99.2 1.7E-11 5.8E-16 97.3 7.9 120 10-182 14-140 (149)
90 1ny5_A Transcriptional regulat 99.2 4.9E-10 1.7E-14 103.1 18.6 194 12-239 136-370 (387)
91 1tue_A Replication protein E1; 99.2 5E-11 1.7E-15 97.9 9.5 116 21-189 44-179 (212)
92 2fna_A Conserved hypothetical 99.2 6.4E-10 2.2E-14 101.0 18.0 208 8-235 8-253 (357)
93 2w58_A DNAI, primosome compone 99.2 2.3E-11 7.8E-16 101.8 7.1 58 4-61 16-81 (202)
94 3upu_A ATP-dependent DNA helic 99.2 1.6E-10 5.6E-15 108.9 11.9 60 1-61 12-72 (459)
95 2qgz_A Helicase loader, putati 99.1 4.6E-10 1.6E-14 100.0 9.6 55 5-59 116-177 (308)
96 1ye8_A Protein THEP1, hypothet 99.0 4.6E-09 1.6E-13 85.7 12.0 68 130-199 99-173 (178)
97 3rlf_A Maltose/maltodextrin im 98.9 9.4E-10 3.2E-14 99.9 7.0 133 37-183 32-206 (381)
98 1vpl_A ABC transporter, ATP-bi 98.9 8.3E-10 2.8E-14 95.5 6.0 133 37-182 44-217 (256)
99 3tif_A Uncharacterized ABC tra 98.9 9.9E-10 3.4E-14 93.9 6.3 138 37-183 34-217 (235)
100 3gfo_A Cobalt import ATP-bindi 98.9 9.8E-10 3.4E-14 95.9 6.3 143 30-184 32-217 (275)
101 4g1u_C Hemin import ATP-bindin 98.9 1.3E-09 4.5E-14 94.8 7.0 144 37-184 40-221 (266)
102 3tui_C Methionine import ATP-b 98.9 1.2E-09 4.1E-14 98.6 6.7 139 37-184 57-237 (366)
103 2olj_A Amino acid ABC transpor 98.9 2.6E-09 8.8E-14 92.7 7.3 137 37-183 53-231 (263)
104 1g6h_A High-affinity branched- 98.9 2E-09 6.7E-14 93.4 6.4 144 37-182 36-224 (257)
105 4akg_A Glutathione S-transfera 98.9 1E-08 3.6E-13 112.8 13.4 146 24-204 1259-1433(2695)
106 2pcj_A ABC transporter, lipopr 98.9 1.4E-09 4.6E-14 92.4 5.1 127 37-170 33-200 (224)
107 1z47_A CYSA, putative ABC-tran 98.9 2.7E-09 9.3E-14 96.2 7.1 138 30-183 39-218 (355)
108 2yyz_A Sugar ABC transporter, 98.9 2.7E-09 9.3E-14 96.4 7.1 133 37-183 32-206 (359)
109 2it1_A 362AA long hypothetical 98.9 3.4E-09 1.2E-13 95.9 7.3 132 37-182 32-205 (362)
110 3f8t_A Predicted ATPase involv 98.8 3.4E-08 1.2E-12 91.1 13.7 171 15-221 215-427 (506)
111 1g29_1 MALK, maltose transport 98.8 4.4E-09 1.5E-13 95.7 7.7 139 37-183 32-212 (372)
112 2ff7_A Alpha-hemolysin translo 98.8 4.9E-09 1.7E-13 90.2 7.2 138 37-182 38-214 (247)
113 3fvq_A Fe(3+) IONS import ATP- 98.8 5.5E-09 1.9E-13 94.2 7.7 145 37-183 33-211 (359)
114 1v43_A Sugar-binding transport 98.8 3.3E-09 1.1E-13 96.3 6.4 142 37-183 40-214 (372)
115 2onk_A Molybdate/tungstate ABC 98.8 2.3E-09 7.9E-14 91.8 4.8 144 35-183 25-199 (240)
116 1sgw_A Putative ABC transporte 98.8 5.5E-09 1.9E-13 87.7 6.9 125 30-172 33-195 (214)
117 1ji0_A ABC transporter; ATP bi 98.8 2.5E-09 8.5E-14 91.7 4.7 144 37-182 35-210 (240)
118 2qi9_C Vitamin B12 import ATP- 98.8 4.2E-09 1.4E-13 90.6 5.7 140 37-183 29-205 (249)
119 3nh6_A ATP-binding cassette SU 98.8 1.4E-09 4.8E-14 96.2 2.4 125 37-172 83-251 (306)
120 2ixe_A Antigen peptide transpo 98.8 8.4E-09 2.9E-13 90.0 6.9 43 129-171 173-218 (271)
121 1b0u_A Histidine permease; ABC 98.8 8.9E-09 3E-13 89.4 6.9 54 129-183 170-225 (262)
122 3d31_A Sulfate/molybdate ABC t 98.8 3.6E-09 1.2E-13 95.3 4.4 132 37-182 29-199 (348)
123 1oxx_K GLCV, glucose, ABC tran 98.8 3E-09 1E-13 96.1 3.9 142 37-182 34-212 (353)
124 2d2e_A SUFC protein; ABC-ATPas 98.7 8.1E-09 2.8E-13 89.1 5.2 53 129-182 160-215 (250)
125 2yz2_A Putative ABC transporte 98.7 2.3E-08 8E-13 87.0 8.0 141 37-183 36-210 (266)
126 2pjz_A Hypothetical protein ST 98.7 7.8E-08 2.7E-12 83.3 10.2 129 37-183 33-198 (263)
127 2ghi_A Transport protein; mult 98.7 2.1E-08 7.1E-13 87.0 6.0 52 129-182 172-224 (260)
128 3gd7_A Fusion complex of cysti 98.7 1.1E-08 3.8E-13 93.4 4.5 137 30-182 45-224 (390)
129 1mv5_A LMRA, multidrug resista 98.7 1.9E-08 6.6E-13 86.3 5.2 36 37-73 31-66 (243)
130 3b5x_A Lipid A export ATP-bind 98.6 3.8E-08 1.3E-12 95.4 7.4 145 21-172 358-541 (582)
131 2nq2_C Hypothetical ABC transp 98.6 6.1E-08 2.1E-12 83.6 7.7 55 129-184 145-202 (253)
132 2cbz_A Multidrug resistance-as 98.6 2.8E-08 9.7E-13 84.9 5.4 53 129-183 144-200 (237)
133 4a82_A Cystic fibrosis transme 98.6 1.8E-08 6.2E-13 97.6 3.4 126 37-173 370-539 (578)
134 2pze_A Cystic fibrosis transme 98.6 6.8E-08 2.3E-12 82.1 6.4 43 129-171 147-191 (229)
135 3qf4_B Uncharacterized ABC tra 98.6 2.9E-08 1E-12 96.4 4.7 126 37-173 384-553 (598)
136 2zu0_C Probable ATP-dependent 98.6 5.2E-08 1.8E-12 84.8 5.8 53 129-182 181-236 (267)
137 3b60_A Lipid A export ATP-bind 98.6 4.5E-08 1.5E-12 94.9 5.5 126 37-173 372-542 (582)
138 3qf4_A ABC transporter, ATP-bi 98.6 2.5E-08 8.5E-13 96.7 3.4 125 37-172 372-540 (587)
139 4akg_A Glutathione S-transfera 98.5 4.3E-06 1.5E-10 92.5 20.5 166 21-235 634-836 (2695)
140 2ihy_A ABC transporter, ATP-bi 98.5 4.2E-08 1.4E-12 85.8 2.6 36 37-73 50-85 (279)
141 2yl4_A ATP-binding cassette SU 98.4 1E-07 3.5E-12 92.6 4.5 132 37-171 373-543 (595)
142 2bbs_A Cystic fibrosis transme 98.4 3.6E-07 1.2E-11 80.3 7.4 43 129-171 176-220 (290)
143 2orw_A Thymidine kinase; TMTK, 98.4 3.1E-07 1E-11 75.3 5.8 50 130-182 76-131 (184)
144 3vkg_A Dynein heavy chain, cyt 98.4 1.9E-06 6.6E-11 95.8 13.4 75 129-203 1373-1470(3245)
145 3ozx_A RNAse L inhibitor; ATP 98.4 5.5E-07 1.9E-11 86.0 7.4 56 129-185 402-460 (538)
146 2i3b_A HCR-ntpase, human cance 98.4 3.8E-06 1.3E-10 68.9 11.2 69 128-198 103-180 (189)
147 2r2a_A Uncharacterized protein 98.4 6.1E-07 2.1E-11 74.2 6.5 60 130-189 87-153 (199)
148 1z6t_A APAF-1, apoptotic prote 98.4 1.2E-05 4.2E-10 78.0 16.8 194 8-228 119-324 (591)
149 2pt7_A CAG-ALFA; ATPase, prote 98.3 2.7E-06 9.2E-11 76.3 10.7 48 21-71 160-207 (330)
150 1yqt_A RNAse L inhibitor; ATP- 98.3 9.3E-07 3.2E-11 84.6 7.6 55 129-184 418-475 (538)
151 4f4c_A Multidrug resistance pr 98.3 2.3E-07 8E-12 97.8 3.6 127 37-174 1108-1280(1321)
152 2b8t_A Thymidine kinase; deoxy 98.3 3.8E-06 1.3E-10 70.6 10.0 111 37-169 15-125 (223)
153 3bk7_A ABC transporter ATP-bin 98.3 9.7E-07 3.3E-11 85.5 7.2 56 129-185 488-546 (607)
154 2eyu_A Twitching motility prot 98.3 3.1E-06 1.1E-10 73.3 9.3 56 9-70 5-61 (261)
155 2a5y_B CED-4; apoptosis; HET: 98.3 8.2E-06 2.8E-10 78.5 13.0 186 16-226 131-331 (549)
156 3b85_A Phosphate starvation-in 98.3 2.2E-06 7.4E-11 71.5 7.8 49 6-66 4-52 (208)
157 1yqt_A RNAse L inhibitor; ATP- 98.2 1.7E-06 5.7E-11 82.8 7.8 55 129-184 175-231 (538)
158 3g5u_A MCG1178, multidrug resi 98.2 4.4E-07 1.5E-11 95.4 3.6 126 37-173 419-588 (1284)
159 3j16_B RLI1P; ribosome recycli 98.2 2.2E-06 7.6E-11 82.9 8.2 55 129-184 238-294 (608)
160 4gp7_A Metallophosphoesterase; 98.2 5.7E-07 2E-11 72.7 3.4 43 129-171 100-160 (171)
161 3g5u_A MCG1178, multidrug resi 98.2 1.5E-06 5E-11 91.5 7.1 133 37-182 1062-1240(1284)
162 4f4c_A Multidrug resistance pr 98.2 6E-07 2E-11 94.7 3.4 126 37-173 447-616 (1321)
163 3jvv_A Twitching mobility prot 98.1 1.1E-05 3.9E-10 72.8 10.0 46 9-59 103-148 (356)
164 3sfz_A APAF-1, apoptotic pepti 98.1 4.8E-05 1.7E-09 80.1 16.3 195 9-226 120-322 (1249)
165 3bk7_A ABC transporter ATP-bin 98.1 3E-06 1E-10 82.1 6.2 55 129-184 245-301 (607)
166 3ozx_A RNAse L inhibitor; ATP 98.1 7.1E-06 2.4E-10 78.3 8.5 55 129-184 155-210 (538)
167 1s96_A Guanylate kinase, GMP k 98.1 1.7E-05 5.7E-10 66.7 9.7 22 37-58 19-40 (219)
168 2ehv_A Hypothetical protein PH 98.0 1.9E-06 6.6E-11 73.9 3.2 21 37-57 33-53 (251)
169 3j16_B RLI1P; ribosome recycli 98.0 1.1E-05 3.6E-10 78.1 8.2 55 129-184 484-541 (608)
170 3vkg_A Dynein heavy chain, cyt 98.0 0.00037 1.3E-08 78.1 20.5 169 19-236 591-797 (3245)
171 3sop_A Neuronal-specific septi 98.0 0.00011 3.8E-09 63.7 12.8 35 37-72 5-39 (270)
172 3szr_A Interferon-induced GTP- 97.9 1.8E-05 6.2E-10 76.8 7.8 116 33-156 44-179 (608)
173 2gza_A Type IV secretion syste 97.9 9.7E-05 3.3E-09 67.0 11.8 45 23-70 166-210 (361)
174 2vhj_A Ntpase P4, P4; non- hyd 97.9 6.3E-05 2.1E-09 66.3 9.6 21 37-57 126-146 (331)
175 2w0m_A SSO2452; RECA, SSPF, un 97.8 6.1E-05 2.1E-09 63.5 9.2 23 37-59 26-48 (235)
176 4a74_A DNA repair and recombin 97.8 2.3E-05 7.9E-10 66.1 5.9 23 37-59 28-50 (231)
177 1htw_A HI0065; nucleotide-bind 97.8 1.3E-05 4.5E-10 63.6 3.9 35 37-73 36-70 (158)
178 3e1s_A Exodeoxyribonuclease V, 97.8 0.00013 4.5E-09 70.2 11.5 57 130-189 279-342 (574)
179 1vt4_I APAF-1 related killer D 97.8 0.00043 1.5E-08 70.2 15.2 41 16-56 131-172 (1221)
180 2iw3_A Elongation factor 3A; a 97.8 6.8E-05 2.3E-09 75.8 9.3 51 129-182 565-616 (986)
181 1tf7_A KAIC; homohexamer, hexa 97.8 4.1E-06 1.4E-10 80.1 0.3 41 29-72 36-78 (525)
182 1ly1_A Polynucleotide kinase; 97.7 8.5E-05 2.9E-09 60.0 7.8 20 37-56 5-24 (181)
183 1g5t_A COB(I)alamin adenosyltr 97.7 0.00022 7.6E-09 58.2 10.1 123 35-172 29-165 (196)
184 3hr8_A Protein RECA; alpha and 97.7 1.9E-05 6.6E-10 71.1 4.2 38 23-60 47-87 (356)
185 2ewv_A Twitching motility prot 97.7 0.0001 3.6E-09 67.0 8.5 23 37-59 139-161 (372)
186 1cr0_A DNA primase/helicase; R 97.7 5.7E-05 2E-09 66.5 6.3 23 37-59 38-60 (296)
187 2zr9_A Protein RECA, recombina 97.7 2.1E-05 7.2E-10 70.9 3.4 25 37-61 64-88 (349)
188 4aby_A DNA repair protein RECN 97.7 0.00018 6.1E-09 66.5 9.8 39 132-170 317-356 (415)
189 2r8r_A Sensor protein; KDPD, P 97.7 0.00019 6.5E-09 59.9 8.9 26 37-62 9-34 (228)
190 2cvh_A DNA repair and recombin 97.6 0.00026 8.7E-09 59.1 9.8 20 37-56 23-42 (220)
191 1xx6_A Thymidine kinase; NESG, 97.6 7E-05 2.4E-09 61.3 5.9 24 37-60 11-34 (191)
192 1n0w_A DNA repair protein RAD5 97.6 6.1E-05 2.1E-09 64.1 5.8 22 37-58 27-48 (243)
193 2iut_A DNA translocase FTSK; n 97.6 0.00097 3.3E-08 63.4 14.3 69 131-199 344-420 (574)
194 3llm_A ATP-dependent RNA helic 97.6 0.00076 2.6E-08 57.1 12.1 20 36-55 78-97 (235)
195 2ga8_A Hypothetical 39.9 kDa p 97.6 6.6E-05 2.3E-09 67.1 5.4 39 20-58 10-48 (359)
196 3dm5_A SRP54, signal recogniti 97.6 0.00071 2.4E-08 62.5 12.3 26 37-62 103-128 (443)
197 3crm_A TRNA delta(2)-isopenten 97.5 7.5E-05 2.6E-09 66.1 5.2 23 36-58 7-29 (323)
198 1pzn_A RAD51, DNA repair and r 97.5 7.1E-05 2.4E-09 67.5 5.1 22 37-58 134-155 (349)
199 3cmu_A Protein RECA, recombina 97.5 0.00043 1.5E-08 74.7 11.6 26 36-61 1429-1454(2050)
200 1w36_D RECD, exodeoxyribonucle 97.5 0.00021 7.2E-09 69.4 8.4 38 130-170 262-299 (608)
201 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00058 2E-08 58.8 10.4 24 35-58 5-28 (260)
202 2ius_A DNA translocase FTSK; n 97.5 0.0011 3.9E-08 62.4 13.0 68 132-199 299-374 (512)
203 3e70_C DPA, signal recognition 97.5 0.00036 1.2E-08 62.2 9.0 34 37-71 132-165 (328)
204 3thx_A DNA mismatch repair pro 97.5 0.0001 3.6E-09 74.5 6.0 20 37-56 665-684 (934)
205 3kl4_A SRP54, signal recogniti 97.5 0.00048 1.6E-08 63.6 9.5 24 37-60 100-123 (433)
206 1rj9_A FTSY, signal recognitio 97.4 0.00063 2.1E-08 60.0 9.7 36 36-72 104-139 (304)
207 3exa_A TRNA delta(2)-isopenten 97.4 0.00072 2.5E-08 59.3 9.6 56 184-242 112-176 (322)
208 2j9r_A Thymidine kinase; TK1, 97.4 0.00021 7.4E-09 59.1 5.9 38 130-170 101-138 (214)
209 3thx_B DNA mismatch repair pro 97.4 0.00032 1.1E-08 70.7 8.3 42 129-170 751-796 (918)
210 3io5_A Recombination and repai 97.4 0.00016 5.4E-09 63.5 5.3 23 37-59 31-53 (333)
211 2oap_1 GSPE-2, type II secreti 97.4 0.00042 1.4E-08 65.6 8.4 50 18-70 246-295 (511)
212 2fz4_A DNA repair protein RAD2 97.4 0.0011 3.7E-08 56.3 10.3 37 19-58 96-132 (237)
213 1ewq_A DNA mismatch repair pro 97.4 0.00031 1.1E-08 69.6 7.8 22 37-58 579-600 (765)
214 3dl0_A Adenylate kinase; phosp 97.4 0.0016 5.3E-08 54.2 11.0 22 37-58 3-24 (216)
215 3trf_A Shikimate kinase, SK; a 97.3 0.00013 4.6E-09 59.2 4.0 24 35-58 6-29 (185)
216 1qhx_A CPT, protein (chloramph 97.3 0.00011 3.7E-09 59.3 3.3 23 36-58 5-27 (178)
217 1u94_A RECA protein, recombina 97.3 0.00034 1.2E-08 63.1 6.9 25 37-61 66-90 (356)
218 3vaa_A Shikimate kinase, SK; s 97.3 0.00012 4.1E-09 60.4 3.6 24 35-58 26-49 (199)
219 1xp8_A RECA protein, recombina 97.3 0.0016 5.5E-08 58.9 11.2 24 37-60 77-100 (366)
220 4eun_A Thermoresistant glucoki 97.3 0.00016 5.5E-09 59.7 4.2 24 35-58 30-53 (200)
221 3kb2_A SPBC2 prophage-derived 97.3 0.00015 5.1E-09 58.1 3.8 23 36-58 3-25 (173)
222 1kag_A SKI, shikimate kinase I 97.3 0.00014 4.7E-09 58.4 3.4 23 36-58 6-28 (173)
223 2iw3_A Elongation factor 3A; a 97.3 0.00043 1.5E-08 70.0 7.6 40 129-170 918-958 (986)
224 1via_A Shikimate kinase; struc 97.2 0.00018 6.2E-09 57.9 3.7 24 35-58 5-28 (175)
225 1t6n_A Probable ATP-dependent 97.2 0.0079 2.7E-07 50.0 14.0 52 129-180 157-210 (220)
226 3c8u_A Fructokinase; YP_612366 97.2 0.00035 1.2E-08 58.0 5.4 35 37-71 25-61 (208)
227 3iij_A Coilin-interacting nucl 97.2 0.00021 7.3E-09 57.7 3.9 24 35-58 12-35 (180)
228 2yhs_A FTSY, cell division pro 97.2 0.00032 1.1E-08 65.5 5.5 93 37-143 296-388 (503)
229 1zp6_A Hypothetical protein AT 97.2 0.0001 3.6E-09 60.2 2.0 21 37-57 12-32 (191)
230 1nrj_B SR-beta, signal recogni 97.2 0.0035 1.2E-07 52.0 11.5 27 32-58 10-36 (218)
231 1tf7_A KAIC; homohexamer, hexa 97.2 0.00019 6.6E-09 68.5 3.9 23 37-59 284-306 (525)
232 2gxq_A Heat resistant RNA depe 97.2 0.0047 1.6E-07 50.7 11.9 51 129-179 143-194 (207)
233 1kgd_A CASK, peripheral plasma 97.2 0.00023 7.9E-09 57.7 3.5 22 37-58 8-29 (180)
234 1kht_A Adenylate kinase; phosp 97.1 0.00025 8.5E-09 57.8 3.6 23 36-58 5-27 (192)
235 3uie_A Adenylyl-sulfate kinase 97.1 0.00038 1.3E-08 57.4 4.6 24 36-59 27-50 (200)
236 1ltq_A Polynucleotide kinase; 97.1 0.0018 6.1E-08 56.9 9.3 22 37-58 5-26 (301)
237 1aky_A Adenylate kinase; ATP:A 97.1 0.00032 1.1E-08 58.8 4.2 24 35-58 5-28 (220)
238 1zuh_A Shikimate kinase; alpha 97.1 0.00031 1E-08 56.1 3.9 25 34-58 7-31 (168)
239 2p5t_B PEZT; postsegregational 97.1 0.00023 7.8E-09 61.1 3.3 22 37-58 35-56 (253)
240 1gvn_B Zeta; postsegregational 97.1 0.00031 1.1E-08 61.5 4.2 22 37-58 36-57 (287)
241 1wb9_A DNA mismatch repair pro 97.1 0.0012 4.2E-08 65.7 8.9 22 37-58 610-631 (800)
242 2dpy_A FLII, flagellum-specifi 97.1 0.00072 2.5E-08 62.8 6.7 48 20-71 146-193 (438)
243 3t61_A Gluconokinase; PSI-biol 97.1 0.00028 9.6E-09 58.2 3.5 23 36-58 20-42 (202)
244 1nks_A Adenylate kinase; therm 97.1 0.00026 8.8E-09 57.8 3.2 24 36-59 3-26 (194)
245 3cm0_A Adenylate kinase; ATP-b 97.1 0.00031 1.1E-08 57.0 3.6 22 37-58 7-28 (186)
246 2orv_A Thymidine kinase; TP4A 97.1 0.0015 5.1E-08 54.6 7.7 36 130-169 90-125 (234)
247 1ls1_A Signal recognition part 97.1 0.00097 3.3E-08 58.6 7.0 23 37-59 101-123 (295)
248 1p9r_A General secretion pathw 97.1 0.00087 3E-08 61.7 6.9 57 10-68 144-200 (418)
249 3foz_A TRNA delta(2)-isopenten 97.1 0.0032 1.1E-07 55.2 10.1 22 37-58 13-34 (316)
250 1z6g_A Guanylate kinase; struc 97.1 0.00033 1.1E-08 58.7 3.8 34 23-58 14-47 (218)
251 2rhm_A Putative kinase; P-loop 97.1 0.00028 9.6E-09 57.6 3.2 22 37-58 8-29 (193)
252 1y63_A LMAJ004144AAA protein; 97.1 0.0004 1.4E-08 56.4 4.0 23 35-57 11-33 (184)
253 1knq_A Gluconate kinase; ALFA/ 97.0 0.00035 1.2E-08 56.2 3.5 23 36-58 10-32 (175)
254 3nwj_A ATSK2; P loop, shikimat 97.0 0.00047 1.6E-08 59.0 4.5 38 19-58 32-72 (250)
255 3lda_A DNA repair protein RAD5 97.0 0.00079 2.7E-08 61.7 6.2 22 37-58 181-202 (400)
256 2qag_C Septin-7; cell cycle, c 97.0 0.0017 5.7E-08 59.9 8.3 22 37-58 34-55 (418)
257 1vma_A Cell division protein F 97.0 0.0031 1.1E-07 55.6 9.7 23 37-59 107-129 (306)
258 2px0_A Flagellar biosynthesis 97.0 0.0028 9.4E-08 55.6 9.4 24 36-59 107-130 (296)
259 3tlx_A Adenylate kinase 2; str 97.0 0.0007 2.4E-08 57.7 5.4 23 36-58 31-53 (243)
260 2c95_A Adenylate kinase 1; tra 97.0 0.00041 1.4E-08 56.7 3.9 24 35-58 10-33 (196)
261 2iyv_A Shikimate kinase, SK; t 97.0 0.00038 1.3E-08 56.5 3.5 23 36-58 4-26 (184)
262 1znw_A Guanylate kinase, GMP k 97.0 0.00033 1.1E-08 58.1 3.2 29 28-58 16-44 (207)
263 3zvl_A Bifunctional polynucleo 97.0 0.0019 6.6E-08 59.6 8.7 22 37-58 261-282 (416)
264 2ze6_A Isopentenyl transferase 97.0 0.00037 1.3E-08 59.8 3.6 23 36-58 3-25 (253)
265 2jeo_A Uridine-cytidine kinase 97.0 0.00029 9.9E-09 60.1 2.9 36 21-58 14-49 (245)
266 1lvg_A Guanylate kinase, GMP k 97.0 0.00045 1.5E-08 56.9 3.9 22 37-58 7-28 (198)
267 1e6c_A Shikimate kinase; phosp 97.0 0.00042 1.4E-08 55.5 3.6 23 36-58 4-26 (173)
268 3fb4_A Adenylate kinase; psych 97.0 0.0004 1.4E-08 57.9 3.5 22 37-58 3-24 (216)
269 3lw7_A Adenylate kinase relate 97.0 0.00038 1.3E-08 55.6 3.3 22 36-58 3-24 (179)
270 2v9p_A Replication protein E1; 97.0 0.0006 2.1E-08 59.9 4.7 35 22-58 116-150 (305)
271 3tr0_A Guanylate kinase, GMP k 97.0 0.00039 1.3E-08 57.4 3.3 21 37-57 10-30 (205)
272 1zak_A Adenylate kinase; ATP:A 97.0 0.00044 1.5E-08 58.0 3.7 24 35-58 6-29 (222)
273 1qf9_A UMP/CMP kinase, protein 97.0 0.00052 1.8E-08 55.9 4.0 23 36-58 8-30 (194)
274 2cdn_A Adenylate kinase; phosp 97.0 0.00044 1.5E-08 57.0 3.6 23 36-58 22-44 (201)
275 1v5w_A DMC1, meiotic recombina 97.0 0.0014 4.8E-08 58.9 7.2 22 37-58 125-146 (343)
276 2qor_A Guanylate kinase; phosp 97.0 0.0004 1.4E-08 57.4 3.3 22 37-58 15-36 (204)
277 2bdt_A BH3686; alpha-beta prot 97.0 0.00041 1.4E-08 56.5 3.2 21 37-57 5-25 (189)
278 1tev_A UMP-CMP kinase; ploop, 97.0 0.00047 1.6E-08 56.3 3.6 22 37-58 6-27 (196)
279 1jql_B DNA polymerase III, del 97.0 0.0098 3.3E-07 45.8 10.9 121 28-186 12-139 (140)
280 1qde_A EIF4A, translation init 97.0 0.0099 3.4E-07 49.5 11.9 44 129-172 154-198 (224)
281 2plr_A DTMP kinase, probable t 96.9 0.00047 1.6E-08 57.1 3.6 24 36-59 6-29 (213)
282 3sr0_A Adenylate kinase; phosp 96.9 0.00048 1.6E-08 57.1 3.5 22 37-58 3-24 (206)
283 1ak2_A Adenylate kinase isoenz 96.9 0.00063 2.1E-08 57.5 4.3 24 35-58 17-40 (233)
284 3a00_A Guanylate kinase, GMP k 96.9 0.00043 1.5E-08 56.3 3.2 22 37-58 4-25 (186)
285 2vli_A Antibiotic resistance p 96.9 0.00035 1.2E-08 56.5 2.5 23 36-58 7-29 (183)
286 4b3f_X DNA-binding protein smu 96.9 0.0014 4.6E-08 64.3 7.1 42 18-61 191-232 (646)
287 2j41_A Guanylate kinase; GMP, 96.9 0.00043 1.5E-08 57.1 3.1 22 37-58 9-30 (207)
288 3cmw_A Protein RECA, recombina 96.9 0.0008 2.7E-08 71.7 5.8 23 37-59 1085-1107(1706)
289 2og2_A Putative signal recogni 96.9 0.0011 3.8E-08 59.7 5.9 34 37-71 160-193 (359)
290 2bbw_A Adenylate kinase 4, AK4 96.9 0.00052 1.8E-08 58.6 3.6 23 36-58 29-51 (246)
291 2pt5_A Shikimate kinase, SK; a 96.9 0.00057 2E-08 54.4 3.6 23 36-58 2-24 (168)
292 3be4_A Adenylate kinase; malar 96.9 0.00049 1.7E-08 57.5 3.4 24 35-58 6-29 (217)
293 2jaq_A Deoxyguanosine kinase; 96.9 0.00055 1.9E-08 56.3 3.6 23 36-58 2-24 (205)
294 2xau_A PRE-mRNA-splicing facto 96.9 0.0086 2.9E-07 59.7 12.7 22 36-57 111-132 (773)
295 3umf_A Adenylate kinase; rossm 96.9 0.00064 2.2E-08 56.7 3.9 22 37-58 32-53 (217)
296 1rz3_A Hypothetical protein rb 96.9 0.0012 4.2E-08 54.4 5.7 22 37-58 25-46 (201)
297 1svm_A Large T antigen; AAA+ f 96.9 0.00074 2.5E-08 61.3 4.6 23 36-58 171-193 (377)
298 2bwj_A Adenylate kinase 5; pho 96.9 0.00051 1.7E-08 56.3 3.2 23 36-58 14-36 (199)
299 1zd8_A GTP:AMP phosphotransfer 96.9 0.00052 1.8E-08 57.7 3.4 24 35-58 8-31 (227)
300 1ukz_A Uridylate kinase; trans 96.9 0.00059 2E-08 56.2 3.6 23 36-58 17-39 (203)
301 1tq4_A IIGP1, interferon-induc 96.9 0.00075 2.6E-08 62.0 4.5 52 18-70 35-104 (413)
302 3cmu_A Protein RECA, recombina 96.9 0.0019 6.5E-08 69.8 8.1 25 37-61 1084-1108(2050)
303 3tau_A Guanylate kinase, GMP k 96.9 0.00056 1.9E-08 56.8 3.3 22 37-58 11-32 (208)
304 1w4r_A Thymidine kinase; type 96.9 0.0011 3.6E-08 54.1 4.8 23 37-59 23-46 (195)
305 1cke_A CK, MSSA, protein (cyti 96.9 0.00063 2.2E-08 57.1 3.6 23 36-58 7-29 (227)
306 2yvu_A Probable adenylyl-sulfa 96.8 0.00066 2.3E-08 55.1 3.6 23 37-59 16-38 (186)
307 1odf_A YGR205W, hypothetical 3 96.8 0.0015 5.2E-08 57.1 6.1 23 37-59 34-56 (290)
308 3ux8_A Excinuclease ABC, A sub 96.8 0.0019 6.5E-08 63.5 7.4 40 132-171 224-265 (670)
309 3fmo_B ATP-dependent RNA helic 96.8 0.014 4.9E-07 51.2 12.4 44 129-172 234-279 (300)
310 2pbr_A DTMP kinase, thymidylat 96.8 0.0007 2.4E-08 55.2 3.5 22 37-58 3-24 (195)
311 2o8b_B DNA mismatch repair pro 96.8 0.0033 1.1E-07 64.4 9.0 18 37-54 792-809 (1022)
312 2xb4_A Adenylate kinase; ATP-b 96.8 0.00074 2.5E-08 56.7 3.6 22 37-58 3-24 (223)
313 1zu4_A FTSY; GTPase, signal re 96.8 0.0075 2.6E-07 53.5 10.3 24 37-60 108-131 (320)
314 3pey_A ATP-dependent RNA helic 96.8 0.0093 3.2E-07 54.0 11.3 43 129-171 144-188 (395)
315 2z0h_A DTMP kinase, thymidylat 96.8 0.00076 2.6E-08 55.1 3.5 22 37-58 3-24 (197)
316 2wsm_A Hydrogenase expression/ 96.8 0.00081 2.8E-08 56.1 3.8 43 16-58 12-54 (221)
317 2wwf_A Thymidilate kinase, put 96.8 0.00066 2.3E-08 56.3 3.2 24 36-59 12-35 (212)
318 1e4v_A Adenylate kinase; trans 96.8 0.00068 2.3E-08 56.5 3.2 23 36-58 2-24 (214)
319 1ex7_A Guanylate kinase; subst 96.8 0.00083 2.8E-08 54.6 3.5 22 37-58 4-25 (186)
320 1nn5_A Similar to deoxythymidy 96.7 0.00096 3.3E-08 55.4 3.9 23 36-58 11-33 (215)
321 3lxx_A GTPase IMAP family memb 96.7 0.014 4.8E-07 49.2 11.2 22 36-57 31-52 (239)
322 2pez_A Bifunctional 3'-phospho 96.7 0.0011 3.9E-08 53.4 4.0 22 37-58 8-29 (179)
323 3b9q_A Chloroplast SRP recepto 96.7 0.00066 2.3E-08 59.8 2.8 34 37-71 103-136 (302)
324 1vec_A ATP-dependent RNA helic 96.7 0.01 3.5E-07 48.6 9.9 43 129-171 145-188 (206)
325 2v54_A DTMP kinase, thymidylat 96.7 0.00096 3.3E-08 54.9 3.5 23 36-58 6-28 (204)
326 3asz_A Uridine kinase; cytidin 96.7 0.00089 3E-08 55.5 3.2 22 37-58 9-30 (211)
327 1r8s_A ADP-ribosylation factor 96.7 0.039 1.3E-06 43.0 12.8 22 37-58 3-24 (164)
328 3ney_A 55 kDa erythrocyte memb 96.7 0.0015 5E-08 53.6 4.2 22 37-58 22-43 (197)
329 1m7g_A Adenylylsulfate kinase; 96.7 0.0019 6.7E-08 53.5 5.1 23 36-58 27-49 (211)
330 1jjv_A Dephospho-COA kinase; P 96.6 0.00086 2.9E-08 55.4 2.7 20 37-56 5-24 (206)
331 2if2_A Dephospho-COA kinase; a 96.6 0.00093 3.2E-08 55.1 2.9 21 36-56 3-23 (204)
332 1sq5_A Pantothenate kinase; P- 96.6 0.0027 9.4E-08 56.0 6.1 32 37-68 83-115 (308)
333 2hf9_A Probable hydrogenase ni 96.6 0.002 6.9E-08 53.9 5.0 42 19-60 23-64 (226)
334 2pl3_A Probable ATP-dependent 96.6 0.0081 2.8E-07 50.5 8.9 51 129-179 170-221 (236)
335 3h1t_A Type I site-specific re 96.6 0.0043 1.5E-07 60.0 8.0 42 18-60 183-224 (590)
336 3euj_A Chromosome partition pr 96.6 0.0015 5.2E-08 61.1 4.4 39 35-74 30-68 (483)
337 3lnc_A Guanylate kinase, GMP k 96.6 0.00058 2E-08 57.7 1.4 21 37-57 30-51 (231)
338 1rif_A DAR protein, DNA helica 96.6 0.023 7.7E-07 49.3 11.6 40 129-171 224-263 (282)
339 3tqc_A Pantothenate kinase; bi 96.6 0.0024 8.2E-08 56.6 5.3 22 37-58 95-116 (321)
340 3cmw_A Protein RECA, recombina 96.6 0.0063 2.2E-07 65.0 9.2 25 37-61 37-61 (1706)
341 3r20_A Cytidylate kinase; stru 96.5 0.0014 4.9E-08 55.2 3.6 23 36-58 11-33 (233)
342 3ux8_A Excinuclease ABC, A sub 96.5 0.0079 2.7E-07 59.1 9.4 42 130-171 564-607 (670)
343 3ber_A Probable ATP-dependent 96.5 0.014 4.7E-07 49.7 9.8 44 129-172 185-229 (249)
344 2nzj_A GTP-binding protein REM 96.5 0.0047 1.6E-07 49.0 6.3 21 36-56 6-26 (175)
345 4e22_A Cytidylate kinase; P-lo 96.5 0.0015 5.3E-08 55.9 3.4 23 36-58 29-51 (252)
346 1uj2_A Uridine-cytidine kinase 96.5 0.0017 5.9E-08 55.5 3.6 23 36-58 24-46 (252)
347 2oxc_A Probable ATP-dependent 96.4 0.021 7.3E-07 47.8 10.4 43 129-171 165-209 (230)
348 3bor_A Human initiation factor 96.4 0.011 3.9E-07 49.7 8.7 43 129-171 172-215 (237)
349 1xjc_A MOBB protein homolog; s 96.4 0.0024 8.1E-08 51.0 4.0 26 34-59 4-29 (169)
350 3llu_A RAS-related GTP-binding 96.4 0.033 1.1E-06 45.2 11.2 21 36-56 22-42 (196)
351 3ly5_A ATP-dependent RNA helic 96.4 0.013 4.6E-07 50.2 9.1 43 129-171 200-243 (262)
352 1hv8_A Putative ATP-dependent 96.4 0.022 7.5E-07 51.0 10.8 43 129-171 146-189 (367)
353 3ake_A Cytidylate kinase; CMP 96.4 0.002 6.8E-08 53.1 3.5 23 36-58 4-26 (208)
354 1z0j_A RAB-22, RAS-related pro 96.4 0.012 4E-07 46.3 8.0 21 37-57 9-29 (170)
355 1qhl_A Protein (cell division 96.4 0.0009 3.1E-08 56.2 1.4 34 37-71 30-63 (227)
356 1gtv_A TMK, thymidylate kinase 96.4 0.00086 3E-08 55.6 1.2 22 37-58 3-24 (214)
357 4eaq_A DTMP kinase, thymidylat 96.4 0.0021 7.1E-08 54.2 3.6 23 37-59 29-51 (229)
358 1uf9_A TT1252 protein; P-loop, 96.4 0.002 6.8E-08 52.9 3.3 22 36-57 10-31 (203)
359 1kao_A RAP2A; GTP-binding prot 96.4 0.051 1.7E-06 42.2 11.6 21 37-57 6-26 (167)
360 3iuy_A Probable ATP-dependent 96.4 0.038 1.3E-06 46.0 11.4 43 129-171 166-209 (228)
361 1q0u_A Bstdead; DEAD protein, 96.3 0.02 6.7E-07 47.5 9.5 51 129-179 149-200 (219)
362 2dr3_A UPF0273 protein PH0284; 96.3 0.0017 5.9E-08 55.0 3.0 26 37-62 26-51 (247)
363 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0096 3.3E-07 47.2 7.3 22 36-57 9-30 (177)
364 2obl_A ESCN; ATPase, hydrolase 96.3 0.0018 6.3E-08 58.1 3.2 47 20-70 60-106 (347)
365 3aez_A Pantothenate kinase; tr 96.3 0.0022 7.5E-08 56.7 3.6 23 37-59 93-115 (312)
366 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0032 1.1E-07 52.0 4.3 37 130-169 101-137 (219)
367 2grj_A Dephospho-COA kinase; T 96.3 0.0027 9.2E-08 51.9 3.8 22 37-58 15-36 (192)
368 2qm8_A GTPase/ATPase; G protei 96.3 0.0012 4.2E-08 59.1 1.9 34 36-70 57-90 (337)
369 2npi_A Protein CLP1; CLP1-PCF1 96.3 0.0012 4.2E-08 61.6 1.9 37 25-64 131-167 (460)
370 2v6i_A RNA helicase; membrane, 96.3 0.014 4.9E-07 54.0 9.0 24 35-58 3-27 (431)
371 3fht_A ATP-dependent RNA helic 96.3 0.038 1.3E-06 50.3 11.9 43 129-171 167-211 (412)
372 1g8f_A Sulfate adenylyltransfe 96.3 0.0038 1.3E-07 58.8 5.1 42 18-59 377-420 (511)
373 2xxa_A Signal recognition part 96.3 0.027 9.2E-07 52.1 10.6 25 37-61 103-127 (433)
374 3ctd_A Putative ATPase, AAA fa 96.3 0.0035 1.2E-07 50.9 4.0 54 272-347 27-80 (213)
375 2j37_W Signal recognition part 96.2 0.044 1.5E-06 51.6 12.1 23 37-59 104-126 (504)
376 1np6_A Molybdopterin-guanine d 96.2 0.0035 1.2E-07 50.3 4.0 26 34-59 6-31 (174)
377 2f1r_A Molybdopterin-guanine d 96.2 0.00078 2.7E-08 54.0 0.2 35 36-70 4-40 (171)
378 2ce2_X GTPase HRAS; signaling 96.2 0.027 9.4E-07 43.7 9.3 22 36-57 5-26 (166)
379 2qt1_A Nicotinamide riboside k 96.2 0.0018 6.2E-08 53.5 2.3 21 37-57 24-44 (207)
380 2qag_B Septin-6, protein NEDD5 96.2 0.0014 5E-08 60.1 1.8 36 22-57 30-65 (427)
381 3dz8_A RAS-related protein RAB 96.2 0.019 6.5E-07 46.3 8.4 22 37-58 26-47 (191)
382 1u8z_A RAS-related protein RAL 96.2 0.013 4.6E-07 45.7 7.2 21 37-57 7-27 (168)
383 1j8m_F SRP54, signal recogniti 96.2 0.037 1.3E-06 48.4 10.6 23 37-59 101-123 (297)
384 3kta_A Chromosome segregation 96.2 0.0033 1.1E-07 50.7 3.5 23 37-59 29-51 (182)
385 3lxw_A GTPase IMAP family memb 96.1 0.13 4.6E-06 43.5 13.8 20 37-56 24-43 (247)
386 3vkw_A Replicase large subunit 96.1 0.009 3.1E-07 55.0 6.7 34 131-168 235-268 (446)
387 1vht_A Dephospho-COA kinase; s 96.1 0.003 1E-07 52.6 3.3 21 36-56 6-26 (218)
388 1s2m_A Putative ATP-dependent 96.1 0.058 2E-06 49.0 12.3 43 129-171 162-205 (400)
389 1z0f_A RAB14, member RAS oncog 96.1 0.024 8.4E-07 44.8 8.7 22 36-57 17-38 (179)
390 1nij_A Hypothetical protein YJ 96.1 0.0022 7.4E-08 57.0 2.5 40 34-73 4-50 (318)
391 1wf3_A GTP-binding protein; GT 96.1 0.22 7.5E-06 43.5 15.3 22 36-57 9-30 (301)
392 2ffh_A Protein (FFH); SRP54, s 96.1 0.014 4.9E-07 53.6 7.8 25 37-61 101-125 (425)
393 3fmp_B ATP-dependent RNA helic 96.1 0.025 8.6E-07 53.0 9.8 44 129-172 234-279 (479)
394 2yv5_A YJEQ protein; hydrolase 96.1 0.0064 2.2E-07 53.5 5.2 30 37-68 168-197 (302)
395 1q3t_A Cytidylate kinase; nucl 96.0 0.005 1.7E-07 52.0 4.3 23 36-58 18-40 (236)
396 2bov_A RAla, RAS-related prote 96.0 0.022 7.4E-07 46.5 8.1 22 36-57 16-37 (206)
397 2oca_A DAR protein, ATP-depend 96.0 0.049 1.7E-06 51.5 11.5 38 19-59 116-153 (510)
398 1xti_A Probable ATP-dependent 96.0 0.067 2.3E-06 48.3 12.0 43 129-171 151-195 (391)
399 1nlf_A Regulatory protein REPA 96.0 0.0035 1.2E-07 54.5 3.2 23 37-59 33-55 (279)
400 3q72_A GTP-binding protein RAD 96.0 0.0068 2.3E-07 47.6 4.6 21 36-56 4-24 (166)
401 3d3q_A TRNA delta(2)-isopenten 96.0 0.0039 1.3E-07 55.5 3.4 23 36-58 9-31 (340)
402 3fe2_A Probable ATP-dependent 96.0 0.025 8.6E-07 47.7 8.4 43 129-171 175-218 (242)
403 3con_A GTPase NRAS; structural 96.0 0.016 5.6E-07 46.6 7.0 21 37-57 24-44 (190)
404 3cr8_A Sulfate adenylyltranfer 96.0 0.0044 1.5E-07 59.1 3.9 41 19-59 352-394 (552)
405 2qmh_A HPR kinase/phosphorylas 96.0 0.0029 1E-07 51.6 2.3 22 37-58 37-58 (205)
406 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.005 1.7E-07 48.0 3.5 24 37-60 26-49 (149)
407 2f9l_A RAB11B, member RAS onco 95.9 0.0043 1.5E-07 50.7 3.3 22 37-58 8-29 (199)
408 2a9k_A RAS-related protein RAL 95.9 0.019 6.6E-07 45.8 7.1 21 37-57 21-41 (187)
409 1zj6_A ADP-ribosylation factor 95.9 0.025 8.7E-07 45.4 7.9 24 33-56 15-38 (187)
410 2ged_A SR-beta, signal recogni 95.9 0.01 3.5E-07 48.0 5.5 22 36-57 50-71 (193)
411 3fho_A ATP-dependent RNA helic 95.9 0.043 1.5E-06 51.9 10.5 44 129-172 258-303 (508)
412 1oix_A RAS-related protein RAB 95.9 0.004 1.4E-07 50.6 2.9 22 37-58 32-53 (191)
413 1lw7_A Transcriptional regulat 95.9 0.0043 1.5E-07 56.2 3.2 25 37-62 173-197 (365)
414 1u0l_A Probable GTPase ENGC; p 95.8 0.0036 1.2E-07 55.1 2.5 31 37-68 172-202 (301)
415 2dyk_A GTP-binding protein; GT 95.8 0.0054 1.8E-07 47.9 3.4 23 35-57 2-24 (161)
416 4dhe_A Probable GTP-binding pr 95.8 0.1 3.4E-06 43.1 11.4 24 33-56 28-51 (223)
417 1wp9_A ATP-dependent RNA helic 95.8 0.051 1.7E-06 50.4 10.6 36 19-58 12-47 (494)
418 3a8t_A Adenylate isopentenyltr 95.8 0.0034 1.2E-07 55.7 2.2 23 36-58 42-64 (339)
419 4edh_A DTMP kinase, thymidylat 95.8 0.0059 2E-07 50.8 3.5 24 37-60 9-32 (213)
420 1mky_A Probable GTP-binding pr 95.8 0.2 6.9E-06 46.3 14.3 22 36-57 182-203 (439)
421 3iev_A GTP-binding protein ERA 95.8 0.081 2.8E-06 46.5 11.1 21 37-57 13-33 (308)
422 2h92_A Cytidylate kinase; ross 95.8 0.0056 1.9E-07 50.9 3.4 22 37-58 6-27 (219)
423 3gmt_A Adenylate kinase; ssgci 95.8 0.0062 2.1E-07 51.1 3.6 22 37-58 11-32 (230)
424 4dsu_A GTPase KRAS, isoform 2B 95.8 0.047 1.6E-06 43.6 8.9 21 37-57 7-27 (189)
425 2efe_B Small GTP-binding prote 95.8 0.046 1.6E-06 43.3 8.8 21 37-57 15-35 (181)
426 2z43_A DNA repair and recombin 95.8 0.0044 1.5E-07 55.1 2.8 23 37-59 110-132 (324)
427 2f6r_A COA synthase, bifunctio 95.7 0.005 1.7E-07 53.6 3.1 20 37-56 78-97 (281)
428 2hup_A RAS-related protein RAB 95.7 0.032 1.1E-06 45.6 7.8 21 37-57 32-52 (201)
429 1m8p_A Sulfate adenylyltransfe 95.7 0.0082 2.8E-07 57.6 4.7 23 37-59 399-421 (573)
430 1zbd_A Rabphilin-3A; G protein 95.7 0.024 8.4E-07 46.1 7.0 21 36-56 10-30 (203)
431 1z06_A RAS-related protein RAB 95.7 0.035 1.2E-06 44.6 7.9 22 36-57 22-43 (189)
432 2eyq_A TRCF, transcription-rep 95.7 0.11 3.6E-06 54.3 13.1 40 18-57 608-647 (1151)
433 3ld9_A DTMP kinase, thymidylat 95.7 0.0081 2.8E-07 50.2 3.9 24 36-59 23-46 (223)
434 2e87_A Hypothetical protein PH 95.7 0.086 2.9E-06 47.4 11.0 21 36-56 169-189 (357)
435 2gk6_A Regulator of nonsense t 95.6 0.014 4.6E-07 56.9 6.0 40 18-60 182-221 (624)
436 3dkp_A Probable ATP-dependent 95.6 0.066 2.3E-06 45.1 9.7 43 129-171 174-221 (245)
437 3lv8_A DTMP kinase, thymidylat 95.6 0.0065 2.2E-07 51.3 3.3 23 37-59 30-52 (236)
438 3p32_A Probable GTPase RV1496/ 95.6 0.013 4.5E-07 52.7 5.5 30 32-61 77-106 (355)
439 3v9p_A DTMP kinase, thymidylat 95.6 0.0052 1.8E-07 51.6 2.6 22 37-58 28-49 (227)
440 3tqf_A HPR(Ser) kinase; transf 95.6 0.0063 2.1E-07 48.4 2.8 20 37-56 19-38 (181)
441 2whx_A Serine protease/ntpase/ 95.5 0.036 1.2E-06 53.7 8.5 42 129-170 276-318 (618)
442 2gks_A Bifunctional SAT/APS ki 95.5 0.013 4.3E-07 56.0 5.2 41 19-59 355-397 (546)
443 1a7j_A Phosphoribulokinase; tr 95.5 0.0046 1.6E-07 54.1 2.0 23 36-58 7-29 (290)
444 2qtf_A Protein HFLX, GTP-bindi 95.5 0.099 3.4E-06 47.1 10.8 23 35-57 180-202 (364)
445 2ocp_A DGK, deoxyguanosine kin 95.5 0.0075 2.6E-07 51.0 3.1 22 37-58 5-26 (241)
446 2wji_A Ferrous iron transport 95.4 0.0083 2.8E-07 47.3 3.1 20 37-56 6-25 (165)
447 2atx_A Small GTP binding prote 95.4 0.017 5.8E-07 46.7 5.0 22 36-57 20-41 (194)
448 2zej_A Dardarin, leucine-rich 95.4 0.0074 2.5E-07 48.6 2.6 20 37-56 5-24 (184)
449 3q3j_B RHO-related GTP-binding 95.4 0.013 4.6E-07 48.4 4.3 21 37-57 30-50 (214)
450 3qks_A DNA double-strand break 95.4 0.01 3.5E-07 48.9 3.5 24 37-60 26-49 (203)
451 4gzl_A RAS-related C3 botulinu 95.3 0.0087 3E-07 49.1 2.9 41 17-57 13-53 (204)
452 2www_A Methylmalonic aciduria 95.3 0.023 7.8E-07 51.0 5.9 24 35-58 75-98 (349)
453 3pih_A Uvrabc system protein A 95.3 0.053 1.8E-06 54.8 9.0 42 130-171 826-869 (916)
454 4tmk_A Protein (thymidylate ki 95.3 0.0099 3.4E-07 49.4 3.2 23 37-59 6-28 (213)
455 3tmk_A Thymidylate kinase; pho 95.3 0.0098 3.3E-07 49.5 3.2 24 36-59 7-30 (216)
456 4dkx_A RAS-related protein RAB 95.3 0.041 1.4E-06 45.7 7.0 21 37-57 16-36 (216)
457 2axn_A 6-phosphofructo-2-kinas 95.3 0.01 3.4E-07 56.4 3.6 23 37-59 38-60 (520)
458 3qf7_A RAD50; ABC-ATPase, ATPa 95.3 0.012 4.2E-07 53.1 4.0 26 37-62 26-51 (365)
459 2p6r_A Afuhel308 helicase; pro 95.3 0.078 2.7E-06 52.3 10.1 43 129-171 137-183 (702)
460 2il1_A RAB12; G-protein, GDP, 95.3 0.044 1.5E-06 44.3 7.0 21 37-57 29-49 (192)
461 2wjy_A Regulator of nonsense t 95.3 0.021 7.2E-07 57.0 6.0 40 18-60 358-397 (800)
462 1z2a_A RAS-related protein RAB 95.3 0.011 3.7E-07 46.4 3.2 22 36-57 7-28 (168)
463 1p5z_B DCK, deoxycytidine kina 95.2 0.0039 1.3E-07 53.6 0.6 23 36-58 26-48 (263)
464 3eph_A TRNA isopentenyltransfe 95.2 0.0098 3.4E-07 54.1 3.2 22 37-58 5-26 (409)
465 2va8_A SSO2462, SKI2-type heli 95.2 0.027 9.3E-07 55.7 6.6 20 35-54 47-66 (715)
466 2z83_A Helicase/nucleoside tri 95.2 0.039 1.3E-06 51.5 7.3 30 27-58 16-46 (459)
467 2lkc_A Translation initiation 95.2 0.014 4.6E-07 46.4 3.6 24 34-57 8-31 (178)
468 3bh0_A DNAB-like replicative h 95.2 0.019 6.6E-07 50.7 4.9 24 37-60 71-94 (315)
469 2wjg_A FEOB, ferrous iron tran 95.1 0.01 3.5E-07 47.7 2.7 20 37-56 10-29 (188)
470 3eiq_A Eukaryotic initiation f 95.1 0.059 2E-06 49.1 8.1 43 129-171 182-225 (414)
471 1ek0_A Protein (GTP-binding pr 95.1 0.013 4.4E-07 46.0 3.2 21 37-57 6-26 (170)
472 2gj8_A MNME, tRNA modification 95.1 0.01 3.5E-07 47.2 2.6 21 37-57 7-27 (172)
473 2j0s_A ATP-dependent RNA helic 95.1 0.11 3.8E-06 47.3 10.0 43 129-171 178-221 (410)
474 4ag6_A VIRB4 ATPase, type IV s 95.1 0.017 5.8E-07 52.8 4.4 30 33-62 34-63 (392)
475 2vp4_A Deoxynucleoside kinase; 95.1 0.0064 2.2E-07 51.1 1.4 21 37-57 23-43 (230)
476 1z08_A RAS-related protein RAB 95.0 0.014 4.8E-07 45.9 3.3 21 37-57 9-29 (170)
477 2zj8_A DNA helicase, putative 95.0 0.039 1.3E-06 54.7 7.1 24 35-58 40-64 (720)
478 2jlq_A Serine protease subunit 95.0 0.08 2.7E-06 49.2 8.9 41 129-170 109-151 (451)
479 2zts_A Putative uncharacterize 95.0 0.013 4.3E-07 49.6 3.1 21 37-57 33-53 (251)
480 2i1q_A DNA repair and recombin 95.0 0.012 4.1E-07 52.2 3.0 22 37-58 101-122 (322)
481 1yks_A Genome polyprotein [con 95.0 0.064 2.2E-06 49.7 8.1 23 36-58 10-33 (440)
482 1ky3_A GTP-binding protein YPT 95.0 0.015 5E-07 46.3 3.3 22 36-57 10-31 (182)
483 2yc2_C IFT27, small RAB-relate 95.0 0.035 1.2E-06 45.2 5.7 22 36-57 22-43 (208)
484 2rcn_A Probable GTPase ENGC; Y 95.0 0.013 4.4E-07 52.6 3.1 21 37-57 218-238 (358)
485 1c1y_A RAS-related protein RAP 95.0 0.015 5.1E-07 45.5 3.2 21 37-57 6-26 (167)
486 3gj0_A GTP-binding nuclear pro 95.0 0.028 9.7E-07 46.5 5.1 20 37-56 18-37 (221)
487 2v3c_C SRP54, signal recogniti 95.0 0.012 4.2E-07 54.4 3.0 24 36-59 101-124 (432)
488 1g16_A RAS-related protein SEC 94.9 0.013 4.6E-07 45.9 2.9 22 36-57 5-26 (170)
489 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.018 6.1E-07 46.0 3.6 21 37-57 8-28 (186)
490 1x6v_B Bifunctional 3'-phospho 94.9 0.015 5E-07 56.2 3.5 23 37-59 55-77 (630)
491 3q85_A GTP-binding protein REM 94.9 0.015 5.1E-07 45.7 3.1 21 36-56 4-24 (169)
492 1r2q_A RAS-related protein RAB 94.9 0.016 5.5E-07 45.4 3.2 21 37-57 9-29 (170)
493 2erx_A GTP-binding protein DI- 94.9 0.013 4.6E-07 46.0 2.8 21 36-56 5-25 (172)
494 2z0m_A 337AA long hypothetical 94.9 0.079 2.7E-06 46.7 8.1 43 129-171 128-171 (337)
495 1svi_A GTP-binding protein YSX 94.9 0.014 4.7E-07 47.3 2.8 24 33-56 22-45 (195)
496 2xzl_A ATP-dependent helicase 94.9 0.03 1E-06 56.0 5.7 39 18-59 362-400 (802)
497 1bif_A 6-phosphofructo-2-kinas 94.8 0.016 5.5E-07 54.3 3.6 23 37-59 42-64 (469)
498 4hlc_A DTMP kinase, thymidylat 94.8 0.019 6.4E-07 47.3 3.6 22 37-58 5-26 (205)
499 1c9k_A COBU, adenosylcobinamid 94.8 0.014 4.9E-07 46.9 2.7 20 37-56 2-21 (180)
500 3bc1_A RAS-related protein RAB 94.8 0.017 5.7E-07 46.5 3.2 21 37-57 14-34 (195)
No 1
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.7e-50 Score=371.55 Aligned_cols=342 Identities=39% Similarity=0.713 Sum_probs=280.7
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHH-hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l-~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
|+|++||||++|++++||+++++.++.++ +.++.+|++|+||+|+||||+++++++.++++..+.+.+++..+. .+.
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~--~~~ 79 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV--TAS 79 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec--ccc
Confidence 59999999999999999999999999999 888888999999999999999999999998988877777665543 111
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC----CCC-CCCceEEEEeCCCcCCHHHHHHHHHHH
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID----TKG-KRGFKVLVLNEVDKLSREAQHSLRRTM 154 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~-~~~~~viiiDE~d~l~~~~~~~Ll~~l 154 (354)
. .+..+..+.+..++++++++.+......+++.++.+....+.. +++ .++++++||||++.|+..++++|+++|
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 80 N-RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp -------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred c-ccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 1 1234555556667777776655443334677777765544331 012 457899999999999999999999999
Q ss_pred hhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Q 018543 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 155 e~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~-~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
++++.++.+|++|+++++++++++|||..++|++|+.+++..+|.+++.++|+.++ +++++.+++.++||+|+|++.|+
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99988999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhcCC-CCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--hCCHHHH
Q 018543 234 TCRVQQY-PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--RLDAEIK 310 (354)
Q Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--~~~~~~~ 310 (354)
.++.... .++.+..+..++++..++++++.++..+..+.+..+++.+++++..|+++..|+..+...+.+ .+++..+
T Consensus 239 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~l 318 (354)
T 1sxj_E 239 SMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNK 318 (354)
T ss_dssp HHHHTTTTEECSSCCCCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHH
T ss_pred HHHHhCCCCcCcCcCCCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHH
Confidence 8887765 577666566677888999999999987778889999999999999999999999999888877 6899999
Q ss_pred HHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 311 HEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
.++++++++++++|+.|.++.++||.|++++|..+
T Consensus 319 ~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~ 353 (354)
T 1sxj_E 319 SSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL 353 (354)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998765
No 2
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=4.8e-44 Score=326.57 Aligned_cols=311 Identities=27% Similarity=0.449 Sum_probs=259.3
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|++||||++|++++||+++++.|+.+++.|+.||++|+||||+||||+++++++.+.+....
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~---------------- 76 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS---------------- 76 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH----------------
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc----------------
Confidence 4899999999999999999999999999999999999999999999999999999988654311
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..+.+++.++... ...+++.++.+...... ..++++|+||||+|.++.+++++|++++|+++.+
T Consensus 77 -----------~~~~~~~~~~~~~--~~~ir~~i~~~~~~~~~---~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~ 140 (340)
T 1sxj_C 77 -----------NMVLELNASDDRG--IDVVRNQIKDFASTRQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140 (340)
T ss_dssp -----------HHEEEECTTSCCS--HHHHHTHHHHHHHBCCS---SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT
T ss_pred -----------ceEEEEcCccccc--HHHHHHHHHHHHhhccc---CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence 0123444443222 23466667666653321 1245799999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~ 240 (354)
+.+|++||.+.++.++++|||..++|++++.+++..++.+++.++++.++++++..+++.++||+|++++.|+.++....
T Consensus 141 ~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~ 220 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLD 220 (340)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTC
T ss_pred eEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765433
Q ss_pred -----CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCC-HHHH
Q 018543 241 -----PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLD-AEIK 310 (354)
Q Consensus 241 -----~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~il~~l~~~~~~-~~~-~~~~ 310 (354)
.++.+. ..........++++++.+.. .+..++...+++++. .|++|.+++..+...+.. .++ ...+
T Consensus 221 ~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~~----~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~ 296 (340)
T 1sxj_C 221 NPDEDEISDDVIYECCGAPRPSDLKAVLKSILE----DDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETR 296 (340)
T ss_dssp SSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHHT----SCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHH
T ss_pred CcccccccHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence 233322 12223345677888888876 567788999999998 899999999988877755 566 7889
Q ss_pred HHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543 311 HEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG 347 (354)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~ 347 (354)
.++++.+++++.+|..|.++.+++|.|+++++..++.
T Consensus 297 ~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~~~~~ 333 (340)
T 1sxj_C 297 VHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFEN 333 (340)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999886654
No 3
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=3.1e-43 Score=319.29 Aligned_cols=298 Identities=21% Similarity=0.320 Sum_probs=246.5
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.+|++||||++|++++|++++++.++.+++.++.+| ++++||||+|||++++++++.+.
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-------------------- 73 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-------------------- 73 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT--------------------
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--------------------
Confidence 489999999999999999999999999999999888 78889999999999999998761
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-HHHHHHHHHHHhhcc
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYS 158 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~ 158 (354)
..++++++++.+ ...+++.+..+....+. .++++++||||+|.++ .+.++.|++++++++
T Consensus 74 ------------~~~~~i~~~~~~---~~~i~~~~~~~~~~~~~----~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~ 134 (324)
T 3u61_B 74 ------------ADMMFVNGSDCK---IDFVRGPLTNFASAASF----DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS 134 (324)
T ss_dssp ------------EEEEEEETTTCC---HHHHHTHHHHHHHBCCC----SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG
T ss_pred ------------CCEEEEcccccC---HHHHHHHHHHHHhhccc----CCCCeEEEEECCcccCcHHHHHHHHHHHHhCC
Confidence 112445554433 23566667666665543 3578999999999999 999999999999998
Q ss_pred CceeEEEEecCCCcccHHHhhhcceeeecCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCHHHHHH
Q 018543 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ-------IVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAIL 230 (354)
Q Consensus 159 ~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~-------~~~~L~~~~~~~~~~i~~-~~l~~i~~~s~gd~R~ai~ 230 (354)
.++.+|++||.+.++.++++|||.+++|++|+.++ +..++..++.++++.+++ ++++.+++.++||+|.+++
T Consensus 135 ~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 135 SNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp GGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred CCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 89999999999999999999999999999999887 455666777889999988 9999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHH
Q 018543 231 SFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIK 310 (354)
Q Consensus 231 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~~~ 310 (354)
.|+.++ ....++.+..-......+.++++++.+.. .+..+++..+++++. +|..|+..++.++.+.+++..+
T Consensus 215 ~L~~~~-~~~~i~~~~v~~~~~~~~~i~~~~~~~~~----~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~~~~~~~l 286 (324)
T 3u61_B 215 ELDSYS-SKGVLDAGILSLVTNDRGAIDDVLESLKN----KDVKQLRALAPKYAA---DYSWFVGKLAEEIYSRVTPQSI 286 (324)
T ss_dssp HHHHHG-GGTCBCC------------CHHHHHHHHT----TCHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHh-ccCCCCHHHHHHHhCCHHHHHHHHHHHHc----CCHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhCCHHHH
Confidence 999988 44456555411111113356667776655 577788888888877 8999999999999999999999
Q ss_pred HHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 311 HEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
.++.+++++++++|+.|.++.+|||.|++++|...
T Consensus 287 ~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~ 321 (324)
T 3u61_B 287 IRMYEIVGENNQYHGIAANTELHLAYLFIQLACEM 321 (324)
T ss_dssp HHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999753
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=1.8e-41 Score=306.79 Aligned_cols=308 Identities=32% Similarity=0.534 Sum_probs=254.6
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|++||||.+|++++|++++++.+..++..++.+|++|+||||+|||++++.+++.+.++....
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~--------------- 69 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD--------------- 69 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHH---------------
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccC---------------
Confidence 58999999999999999999999999999999988999999999999999999999886543110
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..++++.++.... ..+++.+..+....+. ..++++++||||+|.++.+.++.|++++++++.+
T Consensus 70 ------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~ 132 (319)
T 2chq_A 70 ------------NFIEMNASDERGI--DVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKS 132 (319)
T ss_dssp ------------HCEEEETTSTTCT--TTSSHHHHHHHHSCCS---SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSS
T ss_pred ------------CeEEEeCccccCh--HHHHHHHHHHHhcCCC---CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCC
Confidence 0122332222111 1234445555544333 1256799999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~ 240 (354)
+.+|++||.+.++.++++|||..++|++++.+++..++.+++.++|+.+++++++.++..++||+|.+++.++.++..+.
T Consensus 133 ~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~ 212 (319)
T 2chq_A 133 CRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE 212 (319)
T ss_dssp EEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSS
T ss_pred CeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887655
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLDAEIKHEVCHW 316 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~ 316 (354)
.++.+. .+........++++++.+.. ++..++...+.+++. .|++|..++..+...+.. .++.+.+.++++.
T Consensus 213 ~i~~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~ 288 (319)
T 2chq_A 213 VVDADTIYQITATARPEEMTELIQTALK----GNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDK 288 (319)
T ss_dssp CBCHHHHHHHTTCCCHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 555433 22233345677888888876 567788888999987 899999999988877654 4788889999999
Q ss_pred HHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 317 AAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 317 ~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
+.+++.+++.|.++.+++|.++++++..
T Consensus 289 l~~~~~~lk~~~~~~~~le~l~~~l~~~ 316 (319)
T 2chq_A 289 LGEVDFRLTEGANERIQLDAYLAYLSTL 316 (319)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
No 5
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.1e-41 Score=307.43 Aligned_cols=309 Identities=34% Similarity=0.553 Sum_probs=254.7
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|++||+|.+|++++|++++++.+..++..++.+|++|+||||+|||++++++++.+.++...
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~---------------- 76 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWR---------------- 76 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHH----------------
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCccc----------------
Confidence 5899999999999999999999999999999999999999999999999999999987433110
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
...+++++++.. ....+++.+..+....+. ..++++++||||+|.++.+.+++|++++++++.+
T Consensus 77 -----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~ 140 (327)
T 1iqp_A 77 -----------HNFLELNASDER--GINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSN 140 (327)
T ss_dssp -----------HHEEEEETTCHH--HHHTTHHHHHHHHHSCCG---GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred -----------CceEEeeccccC--chHHHHHHHHHHHhhCCc---CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCC
Confidence 011233332211 111244445555544433 1246799999999999999999999999999889
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~ 240 (354)
+++|++++.+.++.++++|||..++|+|++.+++..++..++.++++.+++++++.+++.++||+|.+++.++.++....
T Consensus 141 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 220 (327)
T 1iqp_A 141 VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 220 (327)
T ss_dssp EEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred CeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876554
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHW 316 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~ 316 (354)
.++.+. ..........++++++.+.. .+...+.+.+++++ ..|++|..++..+...+.+ .++...+..++..
T Consensus 221 ~i~~~~v~~~~~~~~~~~i~~l~~~~~~----~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~ 296 (327)
T 1iqp_A 221 KITDENVFMVASRARPEDIREMMLLALK----GNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADK 296 (327)
T ss_dssp EECHHHHHHHTTCCCHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 444333 12223345677888888776 56677888888998 8899999999988887765 5888899999999
Q ss_pred HHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543 317 AAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345 (354)
Q Consensus 317 ~~~~~~~l~~~~~~~l~l~~~i~~~~~~~ 345 (354)
+.+++.+++.|.++.+++|.++++++...
T Consensus 297 l~~~~~~lk~~~~~~~~le~l~~~l~~~~ 325 (327)
T 1iqp_A 297 IGEYNFRLVEGANEIIQLEALLAQFTLIG 325 (327)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998754
No 6
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=4.1e-40 Score=302.14 Aligned_cols=311 Identities=25% Similarity=0.471 Sum_probs=248.0
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.+|++||||.+|++++|++++++.+..++..+..+|++|+||||+|||++++++++.+.++...
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~---------------- 88 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLM---------------- 88 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHH----------------
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccc----------------
Confidence 4899999999999999999999999999999988889999999999999999999987432100
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC-------CCCCCCceEEEEeCCCcCCHHHHHHHHHH
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-------TKGKRGFKVLVLNEVDKLSREAQHSLRRT 153 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~viiiDE~d~l~~~~~~~Ll~~ 153 (354)
....+++++++... ...+++.+..+....... ....+++++++|||+|.+++..+++|++.
T Consensus 89 ----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~ 156 (353)
T 1sxj_D 89 ----------KSRILELNASDERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRT 156 (353)
T ss_dssp ----------TTSEEEECSSSCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHH
T ss_pred ----------ccceEEEccccccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHH
Confidence 01123344433211 123444444444321110 01124568999999999999999999999
Q ss_pred HhhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (354)
Q Consensus 154 le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~ 233 (354)
|++++.++++|+++|++..+.+++++||..+.|++++.+++..++..++.++++.+++++++.+++.++||+|.+++.++
T Consensus 157 le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 157 METYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp HHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC------CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Q 018543 234 TCRVQQY------PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-- 303 (354)
Q Consensus 234 ~~~~~~~------~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-- 303 (354)
.++.... .++.++ .+........++++++.+.. ++...+...+++++..|++|..|+..+...+..
T Consensus 237 ~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~ 312 (353)
T 1sxj_D 237 SASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKS----GDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITND 312 (353)
T ss_dssp HTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHS----CCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCS
T ss_pred HHHHhcCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 7764321 344332 11111122456677777654 456678888999999999999999999888776
Q ss_pred hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 304 RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
.++...+.+++..+++++.+|+.|.++.++++.++++++.
T Consensus 313 ~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~~ 352 (353)
T 1sxj_D 313 NFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 352 (353)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 5788889999999999999999999999999999999874
No 7
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.8e-38 Score=286.36 Aligned_cols=306 Identities=23% Similarity=0.361 Sum_probs=242.9
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|++||+|.+|++++|++..++.+..+++.++.+|++|+||+|+|||++++.+++.+.++...
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~---------------- 72 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYA---------------- 72 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHH----------------
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCccc----------------
Confidence 4799999999999999999999999999999998899999999999999999999987543210
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
...+++++.+... ...+++.++.+...... . ..+++++|||||+|.++.+.+++|++++++++.+
T Consensus 73 -----------~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~-~-~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~ 137 (323)
T 1sxj_B 73 -----------DGVLELNASDDRG--IDVVRNQIKHFAQKKLH-L-PPGKHKIVILDEADSMTAGAQQALRRTMELYSNS 137 (323)
T ss_dssp -----------HHEEEECTTSCCS--HHHHHTHHHHHHHBCCC-C-CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT
T ss_pred -----------CCEEEecCccccC--hHHHHHHHHHHHhcccc-C-CCCCceEEEEECcccCCHHHHHHHHHHHhccCCC
Confidence 0123333333211 23466666666532211 0 1235799999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~ 240 (354)
+.+|++|+.+.++.++++|||..++|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++.++....
T Consensus 138 ~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~ 217 (323)
T 1sxj_B 138 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG 217 (323)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred ceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875433
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHh--CCHHHHHHHHH
Q 018543 241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYE-LLLNCVPPVVVLKRLLYELLKR--LDAEIKHEVCH 315 (354)
Q Consensus 241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~~ 315 (354)
.++.+. .+........+++++ .. .+..++...+++ ++..++++..++..+...+.+. ++...+.++++
T Consensus 218 ~i~~~~v~~~~~~~~~~~i~~~~----~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~ 290 (323)
T 1sxj_B 218 LVNADNVFKIVDSPHPLIVKKML----LA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIK 290 (323)
T ss_dssp SBCHHHHHHHHTSCCHHHHHHHH----SC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCCHHHHHHHH----hc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 333222 011111122333332 22 455667777887 8888999999998876655441 78888999999
Q ss_pred HHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543 316 WAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 316 ~~~~~~~~l~~~~~~~l~l~~~i~~~~~~ 344 (354)
.+.+++.+++.|.++.+++|.++++++..
T Consensus 291 ~l~~~~~~l~~~~~~~l~le~l~~~~~~~ 319 (323)
T 1sxj_B 291 EIGLTHMRILEGVGTYLQLASMLAKIHKL 319 (323)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHhh
Confidence 99999999999999999999999998764
No 8
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=8.6e-36 Score=275.41 Aligned_cols=323 Identities=17% Similarity=0.208 Sum_probs=245.8
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+|.+||||.+|++++|++++++.+..++..++.+| ++|+||+|+|||++++.+++.+.+..... ... |..|
T Consensus 5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~-------~~~~ 76 (373)
T 1jr3_A 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP-------CGVC 76 (373)
T ss_dssp CHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC-------CSSS
T ss_pred HHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC-------Cccc
Confidence 69999999999999999999999999999999888 89999999999999999999887653211 001 1111
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..|..+....+.+.+++.+...... ..+++++..+... + ..++++||||||+|.++.+.++.|++++++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-~----~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~ 149 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKV--EDTRDLLDNVQYA-P----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCS--SCHHHHHHHTTSC-C----SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHhccCCCceEEecccccCCH--HHHHHHHHHHhhc-c----ccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCc
Confidence 1111222222333445544332111 2366666554332 2 2456799999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ- 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~- 239 (354)
+.+|++++.+.++.++++|||..++|++++.+++..++.+++.++|+.+++++++.+++.++||+|.+.++++.+...+
T Consensus 150 ~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~ 229 (373)
T 1jr3_A 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 (373)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999776543
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH---------------
Q 018543 240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL--------------- 302 (354)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~--------------- 302 (354)
..++.+. .+........++++++.+.. ++...+...+.++...+.+|..++..+...+.
T Consensus 230 ~~i~~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~ 305 (373)
T 1jr3_A 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVE----ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 (373)
T ss_dssp TCBCHHHHHHHTTCCCHHHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSG
T ss_pred CcccHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence 3444332 11222234567788888876 45556677777788888888877665544332
Q ss_pred ------------HhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543 303 ------------KRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS 343 (354)
Q Consensus 303 ------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~ 343 (354)
+.++......+++.+.+++..++.+.++.+.+|.++.++..
T Consensus 306 ~~~~~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~ 358 (373)
T 1jr3_A 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 (373)
T ss_dssp GGGTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 23455556678888899999999888999999999988754
No 9
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.5e-34 Score=256.43 Aligned_cols=279 Identities=11% Similarity=0.115 Sum_probs=211.5
Q ss_pred cCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc-CCCCcccccccccccccCCCccccccccccccCcee
Q 018543 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (354)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (354)
||+++++.|+..+++++.|++||+||||+|||++++++++.+. +.. .+++.+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~---------------------------~~~d~~ 53 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP---------------------------KASDVL 53 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC---------------------------CTTTEE
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc---------------------------cCCCEE
Confidence 7899999999999999965699999999999999999998531 000 123455
Q ss_pred eeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543 96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (354)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 175 (354)
++++++. ......++++++.+.. .|. .++++|+||||+|.|+.+++|+|+++||+|++++.||++|++++++++
T Consensus 54 ~l~~~~~-~~~id~ir~li~~~~~-~p~----~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 54 EIDPEGE-NIGIDDIRTIKDFLNY-SPE----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp EECCSSS-CBCHHHHHHHHHHHTS-CCS----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred EEcCCcC-CCCHHHHHHHHHHHhh-ccc----cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChH
Confidence 6665431 1222357888776554 332 357899999999999999999999999999999999999999999999
Q ss_pred HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-------CCCC-CCC-
Q 018543 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-------YPFK-DNQ- 246 (354)
Q Consensus 176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-------~~~~-~~~- 246 (354)
+|+|| +++|++++.+++..+|.+++ + ++++++ ..+.||+|+|++.++.....- ...+ .+.
T Consensus 128 tI~SR--~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v 196 (305)
T 2gno_A 128 TIKSR--VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLL 196 (305)
T ss_dssp HHHTT--SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred HHHce--eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 99999 99999999999999999887 3 556665 457999999999886321100 0011 111
Q ss_pred -CCCCCCHHH--HHHHHHHHHHhccChhHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 018543 247 -AIPAMDWEE--FVFEIASDIMQEQSPKRLFQVRGKLYELLL--NCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYE 321 (354)
Q Consensus 247 -~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 321 (354)
.+.....+. .++++++.+.+ ++..++.+.+++++. .|++|.+++..+++.+... ....+.+.++..+.++
T Consensus 197 ~~~~~~~~~~~~~v~~l~~ai~~----~~~~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l~~~-~~~~~~~~l~~~~~~~ 271 (305)
T 2gno_A 197 KKVLSKGLEGYLACRELLERFSK----VESKEFFALFDQVTNTITGKDAFLLIQRLTRIILHE-NTWESVEDQKSVSFLD 271 (305)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHHH----SCGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHT-SCCCSHHHHHHHHHHH
T ss_pred HHHHccCCcchHHHHHHHHHHHC----CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh-chhhhHHHHHHHHHHH
Confidence 223333433 68999999987 555677788889988 8999988888888877742 1223356777999999
Q ss_pred hHhhC---CCChhHhHHHHHHHHHHH
Q 018543 322 HKMRR---GNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 322 ~~l~~---~~~~~l~l~~~i~~~~~~ 344 (354)
.++.. |.++.+||+.++++++..
T Consensus 272 ~~~~~k~~g~~~~lql~~l~~~~~~~ 297 (305)
T 2gno_A 272 SILRVKIANLNNKLTLMNILAIHRER 297 (305)
T ss_dssp HHHTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 99999 999999999999999853
No 10
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=100.00 E-value=8.1e-32 Score=244.66 Aligned_cols=294 Identities=17% Similarity=0.156 Sum_probs=210.9
Q ss_pred cCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543 17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (354)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (354)
-+++.++.|...+++|+.+| +||+||+|+|||++|+++|+.+.|........ |+.|..|..+....+.+..
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~--------c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKS--------CGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBC--------CSCSHHHHHHHHTCCTTEE
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCC--------CCCCHHHHHHhcCCCCCEE
Confidence 36888999999999999999 99999999999999999999998865321111 3333333344445556666
Q ss_pred eeCCCCC-CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCccc
Q 018543 96 ELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174 (354)
Q Consensus 96 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 174 (354)
.+.+.+. .......++++++.+...+ ..++++|+||||+|.|+.+++++|+++||+|+.++.||++|+++++++
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~-----~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHA-----RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLL 152 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCC-----TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhcc-----ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc
Confidence 6766421 1122235777766544332 246789999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 018543 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWE 254 (354)
Q Consensus 175 ~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~~~~~~~~~ 254 (354)
++++|||+.++|++++.+++..+|.+++ .+++++++.+++.++||+|+|+++++...... .
T Consensus 153 ~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~--------------~ 213 (334)
T 1a5t_A 153 ATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQA--------------R 213 (334)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHH--------------H
T ss_pred HHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHH--------------H
Confidence 9999999999999999999999998754 67899999999999999999999987654221 1
Q ss_pred HHHHHHHHHHHhccC---------hhHHHH----HHHHHHHHHHcC------CChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 018543 255 EFVFEIASDIMQEQS---------PKRLFQ----VRGKLYELLLNC------VPPVVVLKRLLYELLKRLDAEIKHEVCH 315 (354)
Q Consensus 255 ~~~~~l~~~~~~~~~---------~~~~~~----~~~~~~~l~~~~------~~~~~il~~l~~~~~~~~~~~~~~~~~~ 315 (354)
..+.+.+..+..... ..+... ....+.+++..+ ..+. ... ....+.+.++......+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~-~~~-~~~~~a~~~~~~~l~~~~~ 291 (334)
T 1a5t_A 214 ETLCQALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVD-VPG-LVAELANHLSPSRLQAILG 291 (334)
T ss_dssp HHHHHHHHHHHHHCCCGGGHHHHCSTTHHHHHHHHHHHHHHHTCC------CCCTT-CHH-HHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCccccCHH-HHH-HHHHHHHhCCHHHHHHHHH
Confidence 111222222111100 011112 222233333221 1221 122 2233445688888889999
Q ss_pred HHHHHhhHhh--CCCChhHhHHHHHHHHHHH
Q 018543 316 WAAYYEHKMR--RGNKAIFHLEAFVAKFMSI 344 (354)
Q Consensus 316 ~~~~~~~~l~--~~~~~~l~l~~~i~~~~~~ 344 (354)
.+.+.+.+++ .+.++.+.+|.++.++...
T Consensus 292 ~l~~~~~~l~~~~~~n~~l~le~ll~~l~~~ 322 (334)
T 1a5t_A 292 DVCHIREQLMSVTGINRELLITDLLLRIEHY 322 (334)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 9999999999 8999999999999998753
No 11
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=2.3e-32 Score=256.09 Aligned_cols=273 Identities=21% Similarity=0.314 Sum_probs=194.2
Q ss_pred CcccccCCCCCCCcccCHHHH---HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543 2 LWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 78 (354)
+|+++|||++|++++||++++ +.|...++.++.++++|+|||||||||+|+++++.+.++
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~----------------- 77 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD----------------- 77 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-----------------
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-----------------
Confidence 799999999999999999999 899999999999889999999999999999999975211
Q ss_pred CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc
Q 018543 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~ 158 (354)
...++....+. ..+++.+........ .++..++||||+|.++...|+.|++.+|+
T Consensus 78 ---------------f~~l~a~~~~~---~~ir~~~~~a~~~~~-----~~~~~iLfIDEI~~l~~~~q~~LL~~le~-- 132 (447)
T 3pvs_A 78 ---------------VERISAVTSGV---KEIREAIERARQNRN-----AGRRTILFVDEVHRFNKSQQDAFLPHIED-- 132 (447)
T ss_dssp ---------------EEEEETTTCCH---HHHHHHHHHHHHHHH-----TTCCEEEEEETTTCC------CCHHHHHT--
T ss_pred ---------------eEEEEeccCCH---HHHHHHHHHHHHhhh-----cCCCcEEEEeChhhhCHHHHHHHHHHHhc--
Confidence 12222222222 235555554433221 24568999999999999999999999998
Q ss_pred CceeEEEEecCC--CcccHHHhhhcceeeecCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHcCCCHHHHH
Q 018543 159 ASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK-------EGLQLPSGFATRLAEKSNRSLRRAI 229 (354)
Q Consensus 159 ~~~~~Il~~~~~--~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~-------~~~~i~~~~l~~i~~~s~gd~R~ai 229 (354)
..+.+|++|+.. ..+.+++.|||.++.|++++.+++..++.+.+.+ .++.+++++++.+++.++||+|.++
T Consensus 133 ~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 457777777543 3789999999999999999999999999999886 5677999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCC-CCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHH
Q 018543 230 LSFETCRVQQYPFKDN-QAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAE 308 (354)
Q Consensus 230 ~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~ 308 (354)
+.|+.++.....-... ..+. . +.++.++.... ..+++..+.+|++++ .+.++
T Consensus 213 n~Le~a~~~a~~~~~~~~~It----~----e~v~~~l~~~~-~~~dk~gd~~yd~is--------------al~ks---- 265 (447)
T 3pvs_A 213 NTLEMMADMAEVDDSGKRVLK----P----ELLTEIAGERS-ARFDNKGDRFYDLIS--------------ALHKS---- 265 (447)
T ss_dssp HHHHHHHHHSCBCTTSCEECC----H----HHHHHHHTCCC-CC---CCHHHHHHHH--------------HHHHH----
T ss_pred HHHHHHHHhcccccCCCCccC----H----HHHHHHHhhhh-hccCCccchHHHHHH--------------HHHHH----
Confidence 9999887654311000 0111 1 22233332211 122233334454433 45554
Q ss_pred HHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543 309 IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG 347 (354)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~ 347 (354)
.+....+.+.+|..+|..+++++. +|+|++.+.|+
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~----~i~rrl~~~a~ 300 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPL----YVARRCLAIAS 300 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHH
Confidence 556677788899999999888886 78888888875
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.97 E-value=3.8e-29 Score=213.77 Aligned_cols=207 Identities=41% Similarity=0.670 Sum_probs=171.1
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+.+....
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~---------------- 68 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWR---------------- 68 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGG----------------
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccc----------------
Confidence 5899999999999999999999999999998887789999999999999999999977432110
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
...+.++...... ...+++.+..+....+. ...++.+|+|||+|.++...++.|++.+++++.+
T Consensus 69 -----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~ 132 (226)
T 2chg_A 69 -----------DNFIEMNASDERG--IDVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKS 132 (226)
T ss_dssp -----------GGEEEEETTCTTC--HHHHHHHHHHHHTSCCS---TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred -----------cceEEeccccccC--hHHHHHHHHHHhcccCC---CccCceEEEEeChhhcCHHHHHHHHHHHHhcCCC
Confidence 0012233222211 12344444444443222 2356789999999999999999999999998888
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~ 239 (354)
+.+|++++.+..+.+++.+||..+.|++++.+++..++.+++.+.+..+++++++.+++.++||+|.+++.++.++..+
T Consensus 133 ~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211 (226)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888765
No 13
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=1.2e-29 Score=243.10 Aligned_cols=311 Identities=21% Similarity=0.264 Sum_probs=197.2
Q ss_pred CCcccccCCCCCCCcccCHHHHHHHHHHHhc-----------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC
Q 018543 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 63 (354)
.+|++||||++|++++|++..++.+..|++. +..++++|+||||+|||++|+++++++..
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--- 103 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--- 103 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC---
Confidence 4899999999999999999999999999875 12345999999999999999999997611
Q ss_pred cccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC---------CCCCCCceEE
Q 018543 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID---------TKGKRGFKVL 134 (354)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~vi 134 (354)
. ++++++++.... ..+...+........+. ....+++.||
T Consensus 104 ~-----------------------------~i~in~s~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (516)
T 1sxj_A 104 D-----------------------------ILEQNASDVRSK--TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI 152 (516)
T ss_dssp E-----------------------------EEEECTTSCCCH--HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEE
T ss_pred C-----------------------------EEEEeCCCcchH--HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEE
Confidence 1 122232222111 01111111111100000 0112467899
Q ss_pred EEeCCCcCCHHHH---HHHHHHHhhccCceeEEEEecCCC-cccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 018543 135 VLNEVDKLSREAQ---HSLRRTMEKYSASCRLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (354)
Q Consensus 135 iiDE~d~l~~~~~---~~Ll~~le~~~~~~~~Il~~~~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~ 210 (354)
||||+|.++...+ +.|++.+++. ..++|++|++.. ..++++++||..+.|++|+.+++..+|..++.++++.++
T Consensus 153 iIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~ 230 (516)
T 1sxj_A 153 IMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 230 (516)
T ss_dssp EECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred EEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 9999999976544 7888888873 466888888765 556789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCC--CC---CCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Q 018543 211 SGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQA--IP---AMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL 285 (354)
Q Consensus 211 ~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (354)
+++++.|++.++||+|.+++.|+.++.....++.+.. +. ..+....++++++.++..............+.+.+.
T Consensus 231 ~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~~~~~~~~~~~~~~~~~~ 310 (516)
T 1sxj_A 231 PNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIA 310 (516)
T ss_dssp TTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGGGTSTTGGGTSCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCCccccccccCCCHHHhhh
Confidence 9999999999999999999999998877666655431 00 011223456666666643211000000001111111
Q ss_pred c-CCChHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHhhHhh--CCCChhHhHHHHHHHHHHHHHH
Q 018543 286 N-CVPPVVVLKRLLYELLKRL---------DAEIKHEVCHWAAYYEHKMR--RGNKAIFHLEAFVAKFMSIYKG 347 (354)
Q Consensus 286 ~-~~~~~~il~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~--~~~~~~l~l~~~i~~~~~~~~~ 347 (354)
. ..+++.+...+.+++.+.. .-+......++++..|.-.. .+....+.|..+.+-+++++..
T Consensus 311 ~~~~~~~~~~~~i~eNy~~~~p~~~~~~~~~l~~~~~a~d~ls~~D~~~~~i~~~~q~~~l~~~~~~~~~v~p~ 384 (516)
T 1sxj_A 311 LYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPA 384 (516)
T ss_dssp HHTTSTTTHHHHHHHHSSSSEESCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCSSCGGGHHHHHHHHTHHHH
T ss_pred hhccCHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHHhHHHHHHHHHccCCCCcccchhhHhhhhhccH
Confidence 1 1122223333444443211 11345567777777664332 2223456666677766766643
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.96 E-value=5.9e-28 Score=209.17 Aligned_cols=223 Identities=22% Similarity=0.306 Sum_probs=169.5
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+|.++|+|.++++++|++...+.+..++..++.++ ++|+||+|+|||++++.+++.+.+.... .... +..+
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~-~~~~-------~~~~ 83 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATP-------CGVC 83 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCS-CSSC-------CSCS
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCC-------Cccc
Confidence 79999999999999999999999999999888776 9999999999999999999987553311 0000 0111
Q ss_pred cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
..+..+........+.+..... .....++++++.+... ...+++.+|||||+|.++...++.|++.+++++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~ 156 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASR--TKVEDTRDLLDNVQYA-----PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 156 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCG--GGHHHHHHHHHSCCCS-----CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHhccCCcceEEecCccc--ccHHHHHHHHHHhhhc-----hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCc
Confidence 0000111111112233332211 1111233333222111 12345689999999999999999999999998888
Q ss_pred eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~ 239 (354)
+.+|++++....+.+++.+||..++|++++.+++..++.+++.+++..+++++++.+++.++|++|.+.++++.+...+
T Consensus 157 ~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~ 235 (250)
T 1njg_A 157 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 235 (250)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT
T ss_pred eEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886543
No 15
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.95 E-value=9.2e-28 Score=219.08 Aligned_cols=276 Identities=15% Similarity=0.099 Sum_probs=202.1
Q ss_pred HHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCC
Q 018543 25 LKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103 (354)
Q Consensus 25 l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 103 (354)
+.+.++ ++.+| ++|+||+|+||++.++.+++.+.+.+.. ++ ..+++..
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~--------------------~~------~~~~~~~---- 57 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE--------------------EH------HTFSIDP---- 57 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC--------------------EE------EEEECCT----
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC--------------------ee------EEEEecC----
Confidence 445555 45565 9999999999999999999987543210 00 0122221
Q ss_pred CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCc-CCHHHHHHHHHHHhhccCceeEEEEecCC------CcccHH
Q 018543 104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSS------SKVTEA 176 (354)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~------~~l~~~ 176 (354)
. ..++++...+... |+ .++++||+|||++. ++.+++++|++++|+|++++.+|++++.. .++.++
T Consensus 58 ~---~~~~~l~~~~~~~-pl----f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~ 129 (343)
T 1jr3_D 58 N---TDWNAIFSLCQAM-SL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTA 129 (343)
T ss_dssp T---CCHHHHHHHHHHH-HH----CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHH
T ss_pred C---CCHHHHHHHhcCc-CC----ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHH
Confidence 1 2356666554433 32 35679999999999 99999999999999999999999999874 468999
Q ss_pred HhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCCC--CCCCCC
Q 018543 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ--YPFKDNQ--AIPAMD 252 (354)
Q Consensus 177 l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~--~~~~~~~--~~~~~~ 252 (354)
+.|||.+++|.+++.+++..|+.+++.++|+.+++++++.+++.++||+|.+.+.|+.++... ..++.++ .+....
T Consensus 130 i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 130 LANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred HHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999888742 3344322 000001
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH-------------------------------
Q 018543 253 WEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL------------------------------- 301 (354)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~------------------------------- 301 (354)
.+..++++++.+.. ++...+...+.+++..|.+|..++..+..++
T Consensus 210 ~~~~if~l~~ai~~----~d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~ 285 (343)
T 1jr3_D 210 AHFTPFHWVDALLM----GKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGM 285 (343)
T ss_dssp CCCCHHHHHHHHTT----SCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHH
T ss_pred hcCCHHHHHHHHHC----CCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHH
Confidence 12346777777776 4455555655566666777766655443332
Q ss_pred ----HHhCCHHHHHHHHHHHHHHhhHhhCCC--ChhHhHHHHHHHHHH
Q 018543 302 ----LKRLDAEIKHEVCHWAAYYEHKMRRGN--KAIFHLEAFVAKFMS 343 (354)
Q Consensus 302 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~l~~~i~~~~~ 343 (354)
.++++.+....+++.+.+.+..++.|. +..+.+|.++.+++.
T Consensus 286 ~~~~~~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~~~le~l~l~l~~ 333 (343)
T 1jr3_D 286 MGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCH 333 (343)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Confidence 224455556778888999999999874 457999999988753
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.93 E-value=2.1e-24 Score=196.43 Aligned_cols=190 Identities=21% Similarity=0.299 Sum_probs=147.8
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhc-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
.|.+||+|.+|++++|++.+++.+..++.. ...++++|+||||||||++|+++++.+.++ .+
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~---~~---------- 84 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN---IK---------- 84 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC---EE----------
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eE----------
Confidence 699999999999999999999988888864 344469999999999999999999875221 01
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~ 156 (354)
.++..... ....+...+ .. ..+..++||||++.++.+.++.|++.+++
T Consensus 85 -------------------~~~~~~~~--~~~~~~~~~---~~--------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~ 132 (338)
T 3pfi_A 85 -------------------TTAAPMIE--KSGDLAAIL---TN--------LSEGDILFIDEIHRLSPAIEEVLYPAMED 132 (338)
T ss_dssp -------------------EEEGGGCC--SHHHHHHHH---HT--------CCTTCEEEEETGGGCCHHHHHHHHHHHHT
T ss_pred -------------------Eecchhcc--chhHHHHHH---Hh--------ccCCCEEEEechhhcCHHHHHHHHHHHHh
Confidence 11110000 111122222 22 13458999999999999999999999987
Q ss_pred ccC------------------ceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543 157 YSA------------------SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (354)
Q Consensus 157 ~~~------------------~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i 217 (354)
... .+.+|++||....+.+++++|| ..++|++|+.+++..++.+.+...++.+++++++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l 212 (338)
T 3pfi_A 133 YRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEI 212 (338)
T ss_dssp SCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred ccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 431 2678889999889999999999 789999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 018543 218 AEKSNRSLRRAILSFETCR 236 (354)
Q Consensus 218 ~~~s~gd~R~ai~~L~~~~ 236 (354)
++.+.|++|.+.+.++.+.
T Consensus 213 ~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 213 AKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp HHTTTTCHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHH
Confidence 9999999999999998753
No 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.92 E-value=1.6e-24 Score=199.60 Aligned_cols=232 Identities=19% Similarity=0.222 Sum_probs=152.1
Q ss_pred CcccccCCCC-CCCcccCHHHHHH---HHHHHhcCCCC--eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543 2 LWVDKYRPKT-LDQVIVHQDIAQN---LKKLVTEQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (354)
Q Consensus 2 ~w~ekyrP~~-~~~~~g~~~~~~~---l~~~l~~~~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 75 (354)
.+.++++|.. |++++|++.+++. +...+..+..+ +++|+||||+|||++|+++++.+.+..+ .+.+.+..+.
T Consensus 32 ~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-~~~~~~~~~~- 109 (368)
T 3uk6_A 32 GLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP-FTAIAGSEIF- 109 (368)
T ss_dssp CBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC-EEEEEGGGGS-
T ss_pred CcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC-cccccchhhh-
Confidence 3568999998 9999999988765 55566667665 5999999999999999999998754211 1111111100
Q ss_pred cCCCccc-c------------------------cccccc--ccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCC
Q 018543 76 DAGSRNI-D------------------------LELTTL--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGK 128 (354)
Q Consensus 76 ~~~~~~~-~------------------------~~~~~~--~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 128 (354)
+..... . .++... .......+.....+. ....+++.+..............
T Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~g~~~ 187 (368)
T 3uk6_A 110 -SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE-IKSEVREQINAKVAEWREEGKAE 187 (368)
T ss_dssp -CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC--
T ss_pred -hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccc-cHHHHHHHHHHHHHHhhhhcccc
Confidence 000000 0 000000 000000000000000 01234444433322110000001
Q ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEec------------CCCcccHHHhhhcceeeecCCCHHHHHH
Q 018543 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN------------SSSKVTEAIRSRCLNIRINSPTEEQIVK 196 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sR~~~i~~~~~~~~~~~~ 196 (354)
..+.|+||||+|.++.+.++.|++.++++.... ++++++ .+..+.++++|||..+.|++|+.+++..
T Consensus 188 ~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp -CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred ccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHH
Confidence 124699999999999999999999999876543 444444 2557889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHhc
Q 018543 197 VLEFIAKKEGLQLPSGFATRLAEKSN-RSLRRAILSFETCRVQ 238 (354)
Q Consensus 197 ~L~~~~~~~~~~i~~~~l~~i~~~s~-gd~R~ai~~L~~~~~~ 238 (354)
+++.++..+++.+++++++.+++.+. ||+|.++++++.++..
T Consensus 267 il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~ 309 (368)
T 3uk6_A 267 ILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLV 309 (368)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 9999999999976543
No 18
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=5.6e-24 Score=200.89 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=96.5
Q ss_pred eEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEe---------cC----CCcccHHHhhhcceeeecCCCHHHHHHHH
Q 018543 132 KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC---------NS----SSKVTEAIRSRCLNIRINSPTEEQIVKVL 198 (354)
Q Consensus 132 ~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~---------~~----~~~l~~~l~sR~~~i~~~~~~~~~~~~~L 198 (354)
+|+||||+|.|+.+++++|+++||+++.. .||+.+ ++ +.+++++++|||+.++|++++.+++..+|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999887 677787 44 66899999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH
Q 018543 199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETC 235 (354)
Q Consensus 199 ~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~ 235 (354)
++++..+++.++++++..+++.+ .|++|.|+++++.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a 413 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPA 413 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999976
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.92 E-value=3e-23 Score=187.70 Aligned_cols=193 Identities=24% Similarity=0.299 Sum_probs=150.1
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhc----C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
+|.+||+|.+|++++|++...+.+..++.. + ...+++|+||||+|||++|+++++.+.++
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~--------------- 65 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN--------------- 65 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---------------
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---------------
Confidence 588999999999999999998888887753 2 33459999999999999999999876211
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~ 156 (354)
.+.++...... ..++...+... ..+..++||||++.++...++.|++.+++
T Consensus 66 -----------------~~~~~~~~~~~-----~~~l~~~l~~~-------~~~~~~l~lDEi~~l~~~~~~~L~~~l~~ 116 (324)
T 1hqc_A 66 -----------------LRVTSGPAIEK-----PGDLAAILANS-------LEEGDILFIDEIHRLSRQAEEHLYPAMED 116 (324)
T ss_dssp -----------------EEEECTTTCCS-----HHHHHHHHTTT-------CCTTCEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred -----------------EEEEeccccCC-----hHHHHHHHHHh-------ccCCCEEEEECCcccccchHHHHHHHHHh
Confidence 01111111111 12233322220 13457999999999999999999999987
Q ss_pred cc------------------CceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543 157 YS------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (354)
Q Consensus 157 ~~------------------~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i 217 (354)
.. .++.+|++||.+..+.+++.+|| .++.|++|+.+++..++.+.+...++.+++++++.+
T Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l 196 (324)
T 1hqc_A 117 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEI 196 (324)
T ss_dssp SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 42 34678999999999999999999 589999999999999999999988999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhc
Q 018543 218 AEKSNRSLRRAILSFETCRVQ 238 (354)
Q Consensus 218 ~~~s~gd~R~ai~~L~~~~~~ 238 (354)
++.+.|++|.+.+.++.+...
T Consensus 197 ~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 197 GRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp HHHSCSCHHHHHHHHHHHTTT
T ss_pred HHHccCCHHHHHHHHHHHHHH
Confidence 999999999999999977543
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.90 E-value=7.4e-23 Score=176.91 Aligned_cols=193 Identities=17% Similarity=0.241 Sum_probs=147.0
Q ss_pred CcccccCC-CCCCCccc---CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543 2 LWVDKYRP-KTLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (354)
Q Consensus 2 ~w~ekyrP-~~~~~~~g---~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 77 (354)
+|..+|+| .+|+++++ ++.+.+.+..++..+..++++|+||||+|||++++.+++.+.........+++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~--- 92 (242)
T 3bos_A 16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA--- 92 (242)
T ss_dssp EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG---
T ss_pred CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH---
Confidence 58899999 79999996 468888899988876666799999999999999999999874432211111111000
Q ss_pred CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH--HHHHHHHHh
Q 018543 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--QHSLRRTME 155 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~--~~~Ll~~le 155 (354)
... .+.+. ...++.+++|||++.++... ++.|+..++
T Consensus 93 ------------------------~~~------~~~~~-----------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~ 131 (242)
T 3bos_A 93 ------------------------SIS------TALLE-----------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYN 131 (242)
T ss_dssp ------------------------GSC------GGGGT-----------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHH
T ss_pred ------------------------HHH------HHHHH-----------hccCCCEEEEeccccccCCHHHHHHHHHHHH
Confidence 000 00000 01245799999999987655 888888887
Q ss_pred hccCc-e-eEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 018543 156 KYSAS-C-RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226 (354)
Q Consensus 156 ~~~~~-~-~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R 226 (354)
..... . .+|++++... .+.+++.+|| .++.|++|+.+++..++...+...++.+++++++.+++.++||+|
T Consensus 132 ~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r 211 (242)
T 3bos_A 132 RVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLR 211 (242)
T ss_dssp HHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Confidence 65332 2 4788877554 4569999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 018543 227 RAILSFETCRVQ 238 (354)
Q Consensus 227 ~ai~~L~~~~~~ 238 (354)
.+.+.++.++..
T Consensus 212 ~l~~~l~~~~~~ 223 (242)
T 3bos_A 212 TLFDVLDRLDKA 223 (242)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999977643
No 21
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.90 E-value=7.2e-22 Score=179.14 Aligned_cols=189 Identities=21% Similarity=0.284 Sum_probs=145.2
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhcC-----CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 77 (354)
|+++++|++|++++|++.+++.+...++.+ ...+++|+||||+||||+++++++.+.++- .
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~-----------~--- 80 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI-----------H--- 80 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE-----------E---
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE-----------E---
Confidence 699999999999999999999998888653 335699999999999999999999773210 0
Q ss_pred CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~ 157 (354)
...... ......+.... ... ...+|++|||++.+.+..++.|+..++..
T Consensus 81 ------------------~~sg~~--~~~~~~l~~~~---~~~--------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~ 129 (334)
T 1in4_A 81 ------------------VTSGPV--LVKQGDMAAIL---TSL--------ERGDVLFIDEIHRLNKAVEELLYSAIEDF 129 (334)
T ss_dssp ------------------EEETTT--CCSHHHHHHHH---HHC--------CTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred ------------------EEechH--hcCHHHHHHHH---HHc--------cCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence 000000 00111122221 111 23479999999999998888888888654
Q ss_pred c------------------CceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543 158 S------------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (354)
Q Consensus 158 ~------------------~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~ 218 (354)
. ....++.+++.+..+.+++++||. .+.|.+++.+++.++|++.+...++.++++++..|+
T Consensus 130 ~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia 209 (334)
T 1in4_A 130 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIA 209 (334)
T ss_dssp CCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred ccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 2 124566778888899999999996 689999999999999999998899999999999999
Q ss_pred HHcCCCHHHHHHHHHHHH
Q 018543 219 EKSNRSLRRAILSFETCR 236 (354)
Q Consensus 219 ~~s~gd~R~ai~~L~~~~ 236 (354)
+.+.||+|.|+++|+.+.
T Consensus 210 ~~~~G~~R~a~~ll~~~~ 227 (334)
T 1in4_A 210 KRSRGTPRIAIRLTKRVR 227 (334)
T ss_dssp HTSTTCHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHH
Confidence 999999999999998653
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.89 E-value=1.2e-21 Score=181.53 Aligned_cols=192 Identities=19% Similarity=0.261 Sum_probs=145.3
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhc------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 69 (354)
-|+++|+|.+|++++|++.+++.+..++.. ....++||+||||||||++|+++|+++.. ..
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~---~~---- 176 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA---TF---- 176 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EE----
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC---cE----
Confidence 499999999999999999999999988731 12345999999999999999999987521 11
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCC----CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--- 142 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--- 142 (354)
+.+++.+.. ......++.++...... .+.||||||+|.+
T Consensus 177 -------------------------~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~---------~~~il~iDEid~l~~~ 222 (389)
T 3vfd_A 177 -------------------------FNISAASLTSKYVGEGEKLVRALFAVAREL---------QPSIIFIDQVDSLLCE 222 (389)
T ss_dssp -------------------------EEECSCCC-------CHHHHHHHHHHHHHS---------SSEEEEEETGGGGC--
T ss_pred -------------------------EEeeHHHhhccccchHHHHHHHHHHHHHhc---------CCeEEEEECchhhccc
Confidence 111211111 01112344555444332 3479999999988
Q ss_pred --------CHHHHHHHHHHHhhc----cCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCC
Q 018543 143 --------SREAQHSLRRTMEKY----SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQL 209 (354)
Q Consensus 143 --------~~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i 209 (354)
....++.|+..++.. ..++.+|.+||.++.+.+++++||. .+.|+.|+.++...++..++...+..+
T Consensus 223 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l 302 (389)
T 3vfd_A 223 RREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL 302 (389)
T ss_dssp ------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS
T ss_pred CCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC
Confidence 344667788888643 3457788899999999999999995 799999999999999999999889999
Q ss_pred CHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543 210 PSGFATRLAEKSNRSLRRAILSFET 234 (354)
Q Consensus 210 ~~~~l~~i~~~s~gd~R~ai~~L~~ 234 (354)
+++.+..++..+.|..+.++..|-.
T Consensus 303 ~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 303 TQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999988877766543
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=1.9e-21 Score=173.61 Aligned_cols=197 Identities=17% Similarity=0.221 Sum_probs=144.7
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhc------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 69 (354)
.|+++|+|.+|++++|++.+++.+..++.. ....+++|+||||||||++|+++++++.++ .+.++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~---~~~i~ 86 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT---FLNIS 86 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE---EEEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEee
Confidence 589999999999999999999999987743 123359999999999999999999976211 11111
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------ 143 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------ 143 (354)
+..+. . .........++.++..... ..+.+|+|||+|.+.
T Consensus 87 ~~~l~----------------~---------~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~ 132 (297)
T 3b9p_A 87 AASLT----------------S---------KYVGDGEKLVRALFAVARH---------MQPSIIFIDEVDSLLSERSSS 132 (297)
T ss_dssp STTTS----------------S---------SSCSCHHHHHHHHHHHHHH---------TCSEEEEEETGGGTSBCC---
T ss_pred HHHHh----------------h---------cccchHHHHHHHHHHHHHH---------cCCcEEEeccHHHhccccccC
Confidence 11000 0 0001111234444443332 234899999998873
Q ss_pred -----HHHHHHHHHHHhhcc-----CceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543 144 -----REAQHSLRRTMEKYS-----ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (354)
Q Consensus 144 -----~~~~~~Ll~~le~~~-----~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~ 212 (354)
...++.|+..++..+ .++.+|.+||.++.+.+++++|| ..+.++.|+.++...++...+.+.+..++++
T Consensus 133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~ 212 (297)
T 3b9p_A 133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTE 212 (297)
T ss_dssp --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHH
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHH
Confidence 456677888887754 34678888999999999999999 4789999999999999999998888889999
Q ss_pred HHHHHHHHcCCCHHHHHHH-HHHH
Q 018543 213 FATRLAEKSNRSLRRAILS-FETC 235 (354)
Q Consensus 213 ~l~~i~~~s~gd~R~ai~~-L~~~ 235 (354)
.++.+++.+.|..+..+.. ++.+
T Consensus 213 ~~~~la~~~~g~~~~~l~~l~~~a 236 (297)
T 3b9p_A 213 ALRRLAKITDGYSGSDLTALAKDA 236 (297)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999988877644 4433
No 24
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=8e-22 Score=177.11 Aligned_cols=187 Identities=20% Similarity=0.263 Sum_probs=139.2
Q ss_pred CcccCHHHHHHHHHHHh---------------cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543 14 QVIVHQDIAQNLKKLVT---------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~---------------~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 78 (354)
+++|++++++.+..++. .....+++|+||||||||++|+++++.+.......
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~------------- 98 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR------------- 98 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS-------------
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC-------------
Confidence 68999999988887664 22333599999999999999999999874322100
Q ss_pred CccccccccccccCceeeeCCCCC----CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---------CHH
Q 018543 79 SRNIDLELTTLSSANHVELSPSDA----GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SRE 145 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~ 145 (354)
....+.+++.+. -......+...++. . .+.+|||||+|.+ +.+
T Consensus 99 ------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~---~---------~~~vl~iDEid~l~~~~~~~~~~~~ 154 (309)
T 3syl_A 99 ------------KGHLVSVTRDDLVGQYIGHTAPKTKEVLKR---A---------MGGVLFIDEAYYLYRPDNERDYGQE 154 (309)
T ss_dssp ------------SCCEEEECGGGTCCSSTTCHHHHHHHHHHH---H---------TTSEEEEETGGGSCCCC---CCTHH
T ss_pred ------------CCcEEEEcHHHhhhhcccccHHHHHHHHHh---c---------CCCEEEEEChhhhccCCCcccccHH
Confidence 000111111111 01111123333322 1 1269999999977 788
Q ss_pred HHHHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 018543 146 AQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (354)
Q Consensus 146 ~~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~ 219 (354)
.++.|++.|++.+.++.+|++++... .+.++++||| ..++|++|+.+++..++..++.+.++.+++++++.+++
T Consensus 155 ~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~ 234 (309)
T 3syl_A 155 AIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA 234 (309)
T ss_dssp HHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999888888888887653 3468999999 79999999999999999999999999999999999998
Q ss_pred H--------cCCCHHHHHHHHHHHHh
Q 018543 220 K--------SNRSLRRAILSFETCRV 237 (354)
Q Consensus 220 ~--------s~gd~R~ai~~L~~~~~ 237 (354)
. ..||+|.+.+.++.++.
T Consensus 235 ~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 235 YIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 6 45999999999997764
No 25
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.87 E-value=8.6e-21 Score=171.25 Aligned_cols=195 Identities=18% Similarity=0.181 Sum_probs=141.7
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHh----------c-CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~----------~-~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 69 (354)
.|+.++.+.+|++++|++.+++.|+.++. . +..+ ++||+||||||||++|+++|+++..+ .+.++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~v~ 83 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS 83 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC---EEEEc
Confidence 47899999999999999999999998872 2 2222 49999999999999999999976211 11111
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (354)
+..+. . .........++.++...... .+.||+|||+|.+..
T Consensus 84 ~~~l~------------------------~-~~~g~~~~~~~~~f~~a~~~---------~~~vl~iDEid~l~~~~~~~ 129 (322)
T 3eie_A 84 SSDLV------------------------S-KWMGESEKLVKQLFAMAREN---------KPSIIFIDQVDALTGTRGEG 129 (322)
T ss_dssp HHHHH------------------------T-TTGGGHHHHHHHHHHHHHHT---------SSEEEEEECGGGGSCC----
T ss_pred hHHHh------------------------h-cccchHHHHHHHHHHHHHhc---------CCeEEEechhhhhhccCCCC
Confidence 11000 0 00011112355555444332 347999999998853
Q ss_pred ------HHHHHHHHHHhh---ccCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 018543 145 ------EAQHSLRRTMEK---YSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (354)
Q Consensus 145 ------~~~~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l 214 (354)
..++.|+..++. ...++.+|.+||.++.+.+++++||. .+.+++|+.++...+++.++...+..+++..+
T Consensus 130 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l 209 (322)
T 3eie_A 130 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDY 209 (322)
T ss_dssp --CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHH
T ss_pred cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHH
Confidence 346778888864 34567788899999999999999994 69999999999999999999888888899999
Q ss_pred HHHHHHcCC-CHHHHHHHHH
Q 018543 215 TRLAEKSNR-SLRRAILSFE 233 (354)
Q Consensus 215 ~~i~~~s~g-d~R~ai~~L~ 233 (354)
+.+++.+.| +.+..-++++
T Consensus 210 ~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 210 RTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp HHHHHTTTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 999999887 3444334443
No 26
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.87 E-value=1.1e-20 Score=172.66 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=134.8
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHh----------c-CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~----------~-~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 69 (354)
.|..++.|.+|++++|++.+++.|+.++. . ...+ ++||+||||||||++|+++|+++..+ .+.++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~v~ 116 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS 116 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC---EEEee
Confidence 46778999999999999999999998773 1 2233 39999999999999999999987211 11111
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (354)
+..+. . ...+. ....++.++..... ..+.||||||+|.+..
T Consensus 117 ~~~l~----------------~--------~~~g~-~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~r~~~ 162 (355)
T 2qp9_X 117 SSDLV----------------S--------KWMGE-SEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEG 162 (355)
T ss_dssp HHHHH----------------S--------CC----CHHHHHHHHHHHHH---------TSSEEEEEECGGGGTC-----
T ss_pred HHHHh----------------h--------hhcch-HHHHHHHHHHHHHH---------cCCeEEEEechHhhcccCCCC
Confidence 11000 0 00111 11234555544332 2348999999998863
Q ss_pred ------HHHHHHHHHHhhc---cCceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 018543 145 ------EAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (354)
Q Consensus 145 ------~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l 214 (354)
..++.|+..|+.. ..++.+|.+||.++.+.+++++|| ..+.+++|+.++...+++.++...+..+++..+
T Consensus 163 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l 242 (355)
T 2qp9_X 163 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDY 242 (355)
T ss_dssp -CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHH
T ss_pred cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHH
Confidence 3467788888643 456788889999999999999999 579999999999999999998877777889999
Q ss_pred HHHHHHcCC-CHHHHHHHHH
Q 018543 215 TRLAEKSNR-SLRRAILSFE 233 (354)
Q Consensus 215 ~~i~~~s~g-d~R~ai~~L~ 233 (354)
+.|++.+.| +.+..-++++
T Consensus 243 ~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 243 RTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 999999988 3444444444
No 27
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.86 E-value=2.6e-20 Score=172.49 Aligned_cols=217 Identities=16% Similarity=0.209 Sum_probs=149.1
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhc----CCC--CeEEEeCCCCCcHHHHHHHHHHHhcCC-CCccccccccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDC--PHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWK 74 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~~~--~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~ 74 (354)
+|.++|+| ++++|+++..+.+..++.. +.. ++++|+||||+|||++++.+++.+.+. ....+.+++....
T Consensus 9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 47788998 7899999988888887765 232 369999999999999999999987544 2222333321110
Q ss_pred ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHH
Q 018543 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~l 154 (354)
+... -+..+. ..+.......+.......+.+...+.. .+++.+|+|||+|.++...++.|++.+
T Consensus 86 ----~~~~--~~~~l~--~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlilDE~~~l~~~~~~~L~~~~ 149 (389)
T 1fnn_A 86 ----NFTA--IIGEIA--RSLNIPFPRRGLSRDEFLALLVEHLRE--------RDLYMFLVLDDAFNLAPDILSTFIRLG 149 (389)
T ss_dssp ----SHHH--HHHHHH--HHTTCCCCSSCCCHHHHHHHHHHHHHH--------TTCCEEEEEETGGGSCHHHHHHHHHHT
T ss_pred ----CHHH--HHHHHH--HHhCccCCCCCCCHHHHHHHHHHHHhh--------cCCeEEEEEECccccchHHHHHHHHHH
Confidence 0000 000000 000000001111111112222222221 134589999999999999999999999
Q ss_pred hhcc----CceeEEEEecCC---CcccHHHhhhcc--eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc--
Q 018543 155 EKYS----ASCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS-- 221 (354)
Q Consensus 155 e~~~----~~~~~Il~~~~~---~~l~~~l~sR~~--~i~~~~~~~~~~~~~L~~~~~~~--~~~i~~~~l~~i~~~s-- 221 (354)
++.+ .++.+|++++++ ..+.+.+.+||. .++|+|++.+++..++..++... ...+++++++.+++.+
T Consensus 150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (389)
T 1fnn_A 150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA 229 (389)
T ss_dssp TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred HhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence 7754 478899999988 578899999987 69999999999999999988752 2468899999999999
Q ss_pred -------CCCHHHHHHHHHHHHh
Q 018543 222 -------NRSLRRAILSFETCRV 237 (354)
Q Consensus 222 -------~gd~R~ai~~L~~~~~ 237 (354)
.||+|.+++.++.++.
T Consensus 230 ~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 230 QTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SSTTCTTSCCHHHHHHHHHHHHH
T ss_pred cccCCCCCCcHHHHHHHHHHHHH
Confidence 8999999999997654
No 28
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.5e-20 Score=165.69 Aligned_cols=196 Identities=9% Similarity=0.086 Sum_probs=125.9
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCC-------CcccccccccccccCCCccccccccccccCcee
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (354)
..|...+..++.++++|+||||||||++++.+++++.... ...+.++|.... ++.. .+..+. -
T Consensus 34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~--t~~~----~~~~I~----~ 103 (318)
T 3te6_A 34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA--GMDA----LYEKIW----F 103 (318)
T ss_dssp HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC----HH----HHHHHH----H
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC--CHHH----HHHHHH----H
Confidence 3455566677888899999999999999999999885321 112233332211 0000 000000 0
Q ss_pred eeCCCCC-CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh---ccCceeEEEEecCCC
Q 018543 96 ELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK---YSASCRLILCCNSSS 171 (354)
Q Consensus 96 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~---~~~~~~~Il~~~~~~ 171 (354)
.+..... .......++..++.. .. ....+.||+|||+|.+. .|+.|+.+++- ...+..+|+++|+.+
T Consensus 104 ~L~g~~~~~~~~~~~L~~~f~~~---~~----~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 104 AISKENLCGDISLEALNFYITNV---PK----AKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHSCCC--CCCCHHHHHHHHHHS---CG----GGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HhcCCCCCchHHHHHHHHHHHHh---hh----ccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 0000000 001111233333221 00 12346799999999998 67777777753 234577888898875
Q ss_pred ----cccHHHhhhc--ceeeecCCCHHHHHHHHHHHHHHcC-----------------------------------CCCC
Q 018543 172 ----KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKEG-----------------------------------LQLP 210 (354)
Q Consensus 172 ----~l~~~l~sR~--~~i~~~~~~~~~~~~~L~~~~~~~~-----------------------------------~~i~ 210 (354)
.+.+.++||+ ..|.|+|++.+++..+|++++.... +.++
T Consensus 175 ~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (318)
T 3te6_A 175 TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKIN 254 (318)
T ss_dssp CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECC
T ss_pred cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccC
Confidence 2556789998 5799999999999999999987631 1378
Q ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHh
Q 018543 211 SGFATRLAE---KSNRSLRRAILSFETCRV 237 (354)
Q Consensus 211 ~~~l~~i~~---~s~gd~R~ai~~L~~~~~ 237 (354)
+++++.+++ ..+||+|+|+++|+.+..
T Consensus 255 ~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~ 284 (318)
T 3te6_A 255 NKITQLIAKNVANVSGSTEKAFKICEAAVE 284 (318)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence 999999999 578999999999997753
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.5e-20 Score=170.43 Aligned_cols=195 Identities=15% Similarity=0.184 Sum_probs=139.6
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhc------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
+.++++|.+|++++|++.+++.|+.++.. ....++||+||||||||++|+++|+++.+ ..+.+++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~i~~ 150 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA---TFFSISA 150 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC---EEEEEEG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC---eEEEEeh
Confidence 57889999999999999999999988752 23335999999999999999999987521 1111111
Q ss_pred ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-------
Q 018543 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------- 143 (354)
..+. ..........++.++..... ..+.||||||+|.+.
T Consensus 151 ~~l~-------------------------~~~~g~~~~~~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~ 196 (357)
T 3d8b_A 151 SSLT-------------------------SKWVGEGEKMVRALFAVARC---------QQPAVIFIDEIDSLLSQRGDGE 196 (357)
T ss_dssp GGGC-------------------------CSSTTHHHHHHHHHHHHHHH---------TCSEEEEEETHHHHTBC-----
T ss_pred HHhh-------------------------ccccchHHHHHHHHHHHHHh---------cCCeEEEEeCchhhhccCCCCc
Confidence 1000 00001111234444443332 234899999998773
Q ss_pred ----HHHHHHHHHHHhhc----cCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 018543 144 ----REAQHSLRRTMEKY----SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (354)
Q Consensus 144 ----~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l 214 (354)
...++.|+..++.. ..++.+|.+||.+..+.+++++||. .+.++.|+.++...++...+...+..++++.+
T Consensus 197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l 276 (357)
T 3d8b_A 197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI 276 (357)
T ss_dssp -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHH
T ss_pred chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHH
Confidence 23566777777642 3467788889998999999999996 78999999999999999999888888999999
Q ss_pred HHHHHHcCCCHHHHH-HHHHH
Q 018543 215 TRLAEKSNRSLRRAI-LSFET 234 (354)
Q Consensus 215 ~~i~~~s~gd~R~ai-~~L~~ 234 (354)
+.+++.+.|-....+ .+++.
T Consensus 277 ~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 277 EQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHH
Confidence 999999998444333 33443
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.2e-19 Score=163.57 Aligned_cols=194 Identities=18% Similarity=0.210 Sum_probs=138.2
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhc----------C-CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE----------Q-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~----------~-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
+.++.+.+|+|++|++++++.|+..+.. + .. .++||+||||||||++|+++|+++.+. ..+.+++.
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~~ 80 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISSS 80 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEECC
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEhH
Confidence 3567788999999999999999987731 1 22 249999999999999999999976211 11111110
Q ss_pred cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------
Q 018543 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (354)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------- 143 (354)
. +.....+ .....++.++...... .+.||||||+|.+.
T Consensus 81 ~------------------------l~~~~~g-~~~~~~~~lf~~a~~~---------~~~vl~iDEid~l~~~~~~~~~ 126 (322)
T 1xwi_A 81 D------------------------LVSKWLG-ESEKLVKNLFQLAREN---------KPSIIFIDEIDSLCGSRSENES 126 (322)
T ss_dssp S------------------------SCCSSCC-SCHHHHHHHHHHHHHT---------SSEEEEEETTTGGGCCSSSCCT
T ss_pred H------------------------HHhhhhh-HHHHHHHHHHHHHHhc---------CCcEEEeecHHHhccccccccc
Confidence 0 0000011 1223456665544332 34799999999882
Q ss_pred ---HHHHHHHHHHHhhc---cCceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 018543 144 ---REAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216 (354)
Q Consensus 144 ---~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~ 216 (354)
....+.|+..|+.. ..++.+|.+||.++.+.+++++|| ..+.+++|+.++...+++.++...+..+++..++.
T Consensus 127 ~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~ 206 (322)
T 1xwi_A 127 EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRE 206 (322)
T ss_dssp THHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 23566777777653 456788889999999999999999 57999999999999999999887777789999999
Q ss_pred HHHHcCCCHH-HHHHHHH
Q 018543 217 LAEKSNRSLR-RAILSFE 233 (354)
Q Consensus 217 i~~~s~gd~R-~ai~~L~ 233 (354)
|++.+.|-.. ..-++++
T Consensus 207 la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 207 LGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHTCTTCCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHH
Confidence 9999988533 3333344
No 31
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.85 E-value=6.4e-20 Score=172.31 Aligned_cols=196 Identities=18% Similarity=0.193 Sum_probs=139.4
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHh----------c-CCC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~----------~-~~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
++.++.|.+|++++|++.+++.|..++. . ... .++||+||||||||++|+++|+++.+. ..+.+++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~--~~~~v~~ 201 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISS 201 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS--EEEEECC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC--CEEEEeH
Confidence 5677889999999999999999998773 1 122 349999999999999999999975211 1111111
Q ss_pred ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-------
Q 018543 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------- 143 (354)
..+ ... ..+.. ...++.++...... .+.||||||+|.+.
T Consensus 202 ~~l---------------------~~~---~~g~~-~~~~~~~f~~a~~~---------~~~vl~iDEid~l~~~~~~~~ 247 (444)
T 2zan_A 202 SDL---------------------VSK---WLGES-EKLVKNLFQLAREN---------KPSIIFIDEIDSLCGSRSENE 247 (444)
T ss_dssp C---------------------------------C-CCTHHHHHHHHHHS---------CSEEEEESCTTTTCCCSSCCC
T ss_pred HHH---------------------Hhh---hcchH-HHHHHHHHHHHHHc---------CCeEEEEechHhhccCCCCcc
Confidence 100 000 00111 12355555544332 34899999999883
Q ss_pred ----HHHHHHHHHHHhh---ccCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 018543 144 ----REAQHSLRRTMEK---YSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (354)
Q Consensus 144 ----~~~~~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~ 215 (354)
...++.|+..|+. .+.++.+|++||.+..+.+++++||. .+.++.|+.++...+++.++...+..+++..++
T Consensus 248 ~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~ 327 (444)
T 2zan_A 248 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQ 327 (444)
T ss_dssp CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 3466777777765 34568888899999999999999995 799999999999999999888777778899999
Q ss_pred HHHHHcCC-CHHHHHHHHHH
Q 018543 216 RLAEKSNR-SLRRAILSFET 234 (354)
Q Consensus 216 ~i~~~s~g-d~R~ai~~L~~ 234 (354)
.|+..+.| +.+..-++++.
T Consensus 328 ~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 328 ELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp HHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHH
Confidence 99999988 34344344443
No 32
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.84 E-value=7.6e-21 Score=179.77 Aligned_cols=199 Identities=15% Similarity=0.242 Sum_probs=141.7
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|.++|||.++++++|++..++.+...+.....+|+||+||||||||++++++++.+.+...... ..+
T Consensus 169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~-l~~----------- 236 (468)
T 3pxg_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI-LRD----------- 236 (468)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT-TSS-----------
T ss_pred HHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-hcC-----------
Confidence 48899999999999999999999999998877788999999999999999999998754321100 000
Q ss_pred ccccccccccCceeeeCCC-CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 82 IDLELTTLSSANHVELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
...+.++.. .........++.++..+... ++.|+||| .+.++++.|++.|+. ..
T Consensus 237 ----------~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~---------~~~iLfiD----~~~~a~~~L~~~L~~--g~ 291 (468)
T 3pxg_A 237 ----------KRVMTLDMGTKYRGEFEDRLKKVMDEIRQA---------GNIILFID----AAIDASNILKPSLAR--GE 291 (468)
T ss_dssp ----------CCEECC----------CTTHHHHHHHHHTC---------CCCEEEEC----C--------CCCTTS--SS
T ss_pred ----------CeEEEeeCCccccchHHHHHHHHHHHHHhc---------CCeEEEEe----CchhHHHHHHHhhcC--CC
Confidence 011111111 00111112355666655432 23699999 455678888888875 45
Q ss_pred eeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------H
Q 018543 161 CRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS------L 225 (354)
Q Consensus 161 ~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~gd------~ 225 (354)
..+|.+||... .+.+++++||..+.|++|+.++...+|..++.+ .++.++++++..++..+.+. .
T Consensus 292 v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp 371 (468)
T 3pxg_A 292 LQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (468)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCC
Confidence 78888888876 588999999999999999999999999987765 68899999999999976544 4
Q ss_pred HHHHHHHHHHHh
Q 018543 226 RRAILSFETCRV 237 (354)
Q Consensus 226 R~ai~~L~~~~~ 237 (354)
++++.+++.++.
T Consensus 372 ~~ai~ll~~a~~ 383 (468)
T 3pxg_A 372 DKAIDLIDEAGS 383 (468)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 579999987664
No 33
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.84 E-value=8.8e-20 Score=171.08 Aligned_cols=196 Identities=17% Similarity=0.285 Sum_probs=138.3
Q ss_pred cCCC-CCCCcc-c--CHHHHHHHHHHHhcCC-CCeEEEeCCCCCcHHHHHHHHHHHhcCC--CCcccccccccccccCCC
Q 018543 7 YRPK-TLDQVI-V--HQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 7 yrP~-~~~~~~-g--~~~~~~~l~~~l~~~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~ 79 (354)
..|. +|++++ | +..+...+..+.+... .++++|+||||+||||+++++++.+... +...+.+++..
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------- 170 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------- 170 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-------
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-------
Confidence 4554 899988 5 4555666776666533 4559999999999999999999977432 11111111110
Q ss_pred ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC-CCCCC-CceEEEEeCCCcCCH--HHHHHHHHHHh
Q 018543 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-TKGKR-GFKVLVLNEVDKLSR--EAQHSLRRTME 155 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~-~~~viiiDE~d~l~~--~~~~~Ll~~le 155 (354)
...++...+....... ..... ++.++||||++.+.. ..++.|+.+++
T Consensus 171 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~ 221 (440)
T 2z4s_A 171 -----------------------------FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFN 221 (440)
T ss_dssp -----------------------------HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 0111111111000000 00001 457999999999875 78889999987
Q ss_pred hcc-CceeEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Q 018543 156 KYS-ASCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR 227 (354)
Q Consensus 156 ~~~-~~~~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ 227 (354)
... .+..+|++|+.+. .+.++++||| .++.+++|+.+++..+|.+.+...++.+++++++.|+..+.||+|.
T Consensus 222 ~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~ 301 (440)
T 2z4s_A 222 ELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRR 301 (440)
T ss_dssp HHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHH
T ss_pred HHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence 643 4466777777654 3789999999 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 018543 228 AILSFETCRVQ 238 (354)
Q Consensus 228 ai~~L~~~~~~ 238 (354)
+.+.|+.+...
T Consensus 302 l~~~L~~~~~~ 312 (440)
T 2z4s_A 302 LRGAIIKLLVY 312 (440)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999976544
No 34
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.84 E-value=5e-20 Score=170.34 Aligned_cols=215 Identities=19% Similarity=0.255 Sum_probs=143.0
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhc----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCC------CCccccccccc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP------GAEKVKVENKT 72 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~------~~~~~~~~~~~ 72 (354)
|..+|.| ++++|++...+.+..++.. +..++++|+||||+|||++++.+++.+... ....+.+++..
T Consensus 12 l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 12 LLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp HSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred cCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 4567777 8899999999999988853 344459999999999999999999876322 11122222211
Q ss_pred ccccCCCcccccc-ccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH--HHHH
Q 018543 73 WKIDAGSRNIDLE-LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHS 149 (354)
Q Consensus 73 ~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--~~~~ 149 (354)
.. .... +..+. ..+.......+.........+...+. ..+++.+|+|||+|.+... .++.
T Consensus 89 ~~-------~~~~~~~~l~--~~l~~~~~~~~~~~~~~~~~l~~~l~--------~~~~~~vlilDEi~~l~~~~~~~~~ 151 (387)
T 2v1u_A 89 RE-------TPYRVASAIA--EAVGVRVPFTGLSVGEVYERLVKRLS--------RLRGIYIIVLDEIDFLPKRPGGQDL 151 (387)
T ss_dssp SC-------SHHHHHHHHH--HHHSCCCCSSCCCHHHHHHHHHHHHT--------TSCSEEEEEEETTTHHHHSTTHHHH
T ss_pred CC-------CHHHHHHHHH--HHhCCCCCCCCCCHHHHHHHHHHHHh--------ccCCeEEEEEccHhhhcccCCCChH
Confidence 00 0000 00000 00000000111111111222222211 1234679999999999776 6777
Q ss_pred HHHHHhhc-----cCceeEEEEecCC---CcccHHHhhhc--ceeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHH
Q 018543 150 LRRTMEKY-----SASCRLILCCNSS---SKVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRL 217 (354)
Q Consensus 150 Ll~~le~~-----~~~~~~Il~~~~~---~~l~~~l~sR~--~~i~~~~~~~~~~~~~L~~~~~~--~~~~i~~~~l~~i 217 (354)
|..+++.. ..+..+|+++|.. ..+.+.+.+|+ ..+.|+|++.+++..++...+.. .+..+++++++.+
T Consensus 152 l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l 231 (387)
T 2v1u_A 152 LYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLC 231 (387)
T ss_dssp HHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHH
T ss_pred HHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 77777543 4567888999887 57889999999 67999999999999999998876 4677889999999
Q ss_pred HHHcC---CCHHHHHHHHHHHHh
Q 018543 218 AEKSN---RSLRRAILSFETCRV 237 (354)
Q Consensus 218 ~~~s~---gd~R~ai~~L~~~~~ 237 (354)
++.+. ||+|.+++.++.++.
T Consensus 232 ~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 232 AALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 99998 999999999997654
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=2.9e-20 Score=166.84 Aligned_cols=194 Identities=16% Similarity=0.263 Sum_probs=131.2
Q ss_pred CCcccCHHHHHHHHHHHhc--------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543 13 DQVIVHQDIAQNLKKLVTE--------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 78 (354)
++++|++++++.+...+.. ....+++|+||||||||++++++++.+.+ ..+.+++..+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~---~~~~i~~~~~~---- 87 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKFT---- 87 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGGGGS----
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEcchhcc----
Confidence 3589999999988887754 23345999999999999999999997722 11222221111
Q ss_pred CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH------------
Q 018543 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA------------ 146 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~------------ 146 (354)
.. .+ .+......++++... .+-.......+.|++|||+|.+....
T Consensus 88 ------------~~---~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 144 (310)
T 1ofh_A 88 ------------EV---GY----VGKEVDSIIRDLTDS----AGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGV 144 (310)
T ss_dssp ------------SC---CS----GGGSTTHHHHHHHHT----TTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHH
T ss_pred ------------cC---Cc----cCccHHHHHHHHHHH----hhHHHhhccCCCEEEEEChhhcCccccccccchhHHHH
Confidence 00 00 010111123333221 10000000135799999999997554
Q ss_pred HHHHHHHHhhc----------cCceeEEEEe----cCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHH-----------
Q 018543 147 QHSLRRTMEKY----------SASCRLILCC----NSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEF----------- 200 (354)
Q Consensus 147 ~~~Ll~~le~~----------~~~~~~Il~~----~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~----------- 200 (354)
++.|++.|++. ..++.+|+++ +.+..+.+++.+||. .+.|++|+.+++..++++
T Consensus 145 ~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 224 (310)
T 1ofh_A 145 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA 224 (310)
T ss_dssp HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHH
Confidence 88999999863 2356666664 345678999999996 599999999999999983
Q ss_pred HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Q 018543 201 IAKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCR 236 (354)
Q Consensus 201 ~~~~~~~--~i~~~~l~~i~~~s--------~gd~R~ai~~L~~~~ 236 (354)
.+...+. .+++++++.|++.+ .||+|.+.+.++.+.
T Consensus 225 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 225 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp HHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred HHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 2333453 68999999999988 899999999999765
No 36
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.84 E-value=7e-20 Score=165.56 Aligned_cols=192 Identities=18% Similarity=0.239 Sum_probs=135.4
Q ss_pred CCCCCcc-c--CHHHHHHHHHHHhcC--CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543 10 KTLDQVI-V--HQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (354)
Q Consensus 10 ~~~~~~~-g--~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (354)
.+|++++ | +..+...+..++... ..++++|+||||+||||+++++++.+...+...+.+++..+.
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~---------- 77 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA---------- 77 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH----------
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH----------
Confidence 4789997 4 566667777777664 334599999999999999999999774322111111111000
Q ss_pred cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--HHHHHHHHHHhhc-cCce
Q 018543 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKY-SASC 161 (354)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~Ll~~le~~-~~~~ 161 (354)
. .... .........+.... .++.+++|||++.+.. ..++.++..++.. ..+.
T Consensus 78 ------~-~~~~-------~~~~~~~~~~~~~~-----------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~ 132 (324)
T 1l8q_A 78 ------Q-AMVE-------HLKKGTINEFRNMY-----------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK 132 (324)
T ss_dssp ------H-HHHH-------HHHHTCHHHHHHHH-----------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTC
T ss_pred ------H-HHHH-------HHHcCcHHHHHHHh-----------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCC
Confidence 0 0000 00000011111111 1247999999999875 6788888888653 3445
Q ss_pred eEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543 162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (354)
Q Consensus 162 ~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~ 234 (354)
.+|++++++. .+.+++.||+ .+++|+| +.++...++...+...++.+++++++.+++.+ ||+|.+.+.|+.
T Consensus 133 ~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~ 210 (324)
T 1l8q_A 133 QIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKL 210 (324)
T ss_dssp EEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred eEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 6777777553 5889999999 6899999 99999999999999999999999999999999 999999999998
Q ss_pred HHhc
Q 018543 235 CRVQ 238 (354)
Q Consensus 235 ~~~~ 238 (354)
++..
T Consensus 211 ~~~~ 214 (324)
T 1l8q_A 211 IKLK 214 (324)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7755
No 37
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.83 E-value=1.9e-19 Score=157.34 Aligned_cols=197 Identities=17% Similarity=0.246 Sum_probs=136.5
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 69 (354)
+|.++++|.+|++++|++.+++.+...+.. ...+ +++|+||||+||||+++++++.+..+ .+.++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~ 77 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTIS 77 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEEC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEe
Confidence 699999999999999999998887766532 1233 49999999999999999999976221 12222
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (354)
+..+. . ...+ .....++.+++.... ..+.+++|||+|.+..
T Consensus 78 ~~~~~---------------------~---~~~~-~~~~~~~~~~~~a~~---------~~~~il~iDeid~l~~~~~~~ 123 (257)
T 1lv7_A 78 GSDFV---------------------E---MFVG-VGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAG 123 (257)
T ss_dssp SCSST---------------------T---SCCC-CCHHHHHHHHHHHHT---------TCSEEEEETTHHHHTCCCSTT
T ss_pred HHHHH---------------------H---Hhhh-hhHHHHHHHHHHHHH---------cCCeeehhhhhhhhccCCCCC
Confidence 21111 0 0001 111234555544332 2347999999976632
Q ss_pred ---------HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 018543 145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (354)
Q Consensus 145 ---------~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~ 210 (354)
...+.++..++.. ..++.+|.+||.++.+.+++.+ |+ ..+.|++|+.++...+++..+.+.. ++
T Consensus 124 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~ 201 (257)
T 1lv7_A 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LA 201 (257)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BC
T ss_pred cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CC
Confidence 3456677777643 3457788889999999999987 76 4689999999999999988775433 33
Q ss_pred HH-HHHHHHHHcCC-CHHHHHHHHHHHHh
Q 018543 211 SG-FATRLAEKSNR-SLRRAILSFETCRV 237 (354)
Q Consensus 211 ~~-~l~~i~~~s~g-d~R~ai~~L~~~~~ 237 (354)
++ .+..++..+.| +.|...++++.++.
T Consensus 202 ~~~~~~~la~~~~G~~~~dl~~l~~~a~~ 230 (257)
T 1lv7_A 202 PDIDAAIIARGTPGFSGADLANLVNEAAL 230 (257)
T ss_dssp TTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 33 36778888999 99988888776554
No 38
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.83 E-value=4.7e-20 Score=165.65 Aligned_cols=201 Identities=16% Similarity=0.271 Sum_probs=138.5
Q ss_pred CCcccCHHHHHHHHHHHhcC--------CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~~--------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
++++|++.+++.+...+..+ +.. +++|+||||||||++|+++++.+.+.....+.+++..+. . ..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~--~--~~-- 90 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM--E--KH-- 90 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC--S--TT--
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc--c--cc--
Confidence 46789999999888888753 223 499999999999999999999876544333333332221 0 00
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~----- 158 (354)
.. ...+...+...+......+.+ .+.. ....+++|||+|.++++.++.|++.|++..
T Consensus 91 -~~-----~~l~g~~~~~~~~~~~~~~~~---~~~~---------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~ 152 (311)
T 4fcw_A 91 -AV-----SRLIGAPPGYVGYEEGGQLTE---AVRR---------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSH 152 (311)
T ss_dssp -HH-----HHHHCCCTTSTTTTTCCHHHH---HHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTT
T ss_pred -cH-----HHhcCCCCccccccccchHHH---HHHh---------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCC
Confidence 00 000111111111111111222 2222 123799999999999999999999998754
Q ss_pred ------CceeEEEEecC--------------------------CCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHc
Q 018543 159 ------ASCRLILCCNS--------------------------SSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE 205 (354)
Q Consensus 159 ------~~~~~Il~~~~--------------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~ 205 (354)
.++.+|++||. ...+.+++.+|| .++.|.||+.+++..++...+.+.
T Consensus 153 ~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 153 GRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp SCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred CCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 35668888888 336788999999 689999999999999998866542
Q ss_pred ---------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 018543 206 ---------GLQLPSGFATRLAEKS---NRSLRRAILSFETCRV 237 (354)
Q Consensus 206 ---------~~~i~~~~l~~i~~~s---~gd~R~ai~~L~~~~~ 237 (354)
.+.+++++++.+++.+ .|++|.+.+.++.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 233 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 3568899999999976 4999999998886653
No 39
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.83 E-value=1.1e-19 Score=168.12 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=140.6
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhc----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCC--------CCcccccc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP--------GAEKVKVE 69 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~--------~~~~~~~~ 69 (354)
.|.++|+| ++++|+++..+.+..++.. +..++++|+||||+|||++++.+++.+... ....+.++
T Consensus 12 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 12 FIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp TTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 57888999 8899999888877766643 344469999999999999999999976332 11112222
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH-HH
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QH 148 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-~~ 148 (354)
+.... .+... -+..+. ...........+......+..+...+ . ..+ .+|+|||+|.+.... ++
T Consensus 89 ~~~~~---~~~~~--~~~~l~-~~l~~~~~~~~~~~~~~~~~~l~~~l-~--------~~~-~vlilDEi~~l~~~~~~~ 152 (384)
T 2qby_B 89 CREVG---GTPQA--VLSSLA-GKLTGFSVPKHGINLGEYIDKIKNGT-R--------NIR-AIIYLDEVDTLVKRRGGD 152 (384)
T ss_dssp HHHHC---SCHHH--HHHHHH-HHHHCSCCCSSSSCTHHHHHHHHHHH-S--------SSC-EEEEEETTHHHHHSTTSH
T ss_pred CccCC---CCHHH--HHHHHH-HHhcCCCCCCCCCCHHHHHHHHHHHh-c--------cCC-CEEEEECHHHhccCCCCc
Confidence 11000 00000 000000 00000000111111111122222111 1 112 399999999886542 55
Q ss_pred H-HHHHHhhccCceeEEEEecCC---CcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHc
Q 018543 149 S-LRRTMEKYSASCRLILCCNSS---SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAEKS 221 (354)
Q Consensus 149 ~-Ll~~le~~~~~~~~Il~~~~~---~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~--~~~~i~~~~l~~i~~~s 221 (354)
. +..+++.. .++.+|++++.. ..+.+++++|+ ..++|+|++.+++..++..++.. .+..+++++++.+++.+
T Consensus 153 ~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 153 IVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp HHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred eeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence 5 55555544 678899999987 57899999994 79999999999999999998875 35678899999999998
Q ss_pred C---CCHHHHHHHHHHHHhcC
Q 018543 222 N---RSLRRAILSFETCRVQQ 239 (354)
Q Consensus 222 ~---gd~R~ai~~L~~~~~~~ 239 (354)
. ||+|.+++.++.+....
T Consensus 232 ~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 232 AKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp HTTCCCHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHHHHHHHHHHHHh
Confidence 8 99999999999876543
No 40
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.1e-19 Score=160.93 Aligned_cols=181 Identities=20% Similarity=0.284 Sum_probs=125.7
Q ss_pred cccCCCCCCCcccCHHHHHHHHHHHhc-----------CC-CCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QD-CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
++-...+|+|+.|.+++++.|+..+.- |- .|. +|||||||||||++|+++|+++..+ .+.+.+.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~---f~~v~~s 216 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK---FIRVSGA 216 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE---EEEEEGG
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC---ceEEEhH
Confidence 444457899999999999999987742 33 333 9999999999999999999987221 1111111
Q ss_pred cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------
Q 018543 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------- 144 (354)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------- 144 (354)
.+ . +.+-......+++++....... +.||||||+|.+..
T Consensus 217 ~l------------------------~-sk~vGese~~vr~lF~~Ar~~a---------P~IIFiDEiDai~~~R~~~~~ 262 (405)
T 4b4t_J 217 EL------------------------V-QKYIGEGSRMVRELFVMAREHA---------PSIIFMDEIDSIGSTRVEGSG 262 (405)
T ss_dssp GG------------------------S-CSSTTHHHHHHHHHHHHHHHTC---------SEEEEEESSSCCTTSCSCSSS
T ss_pred Hh------------------------h-ccccchHHHHHHHHHHHHHHhC---------CceEeeecchhhccCCCCCCC
Confidence 00 0 0111112235777776655543 37999999998831
Q ss_pred ----H---HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543 145 ----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (354)
Q Consensus 145 ----~---~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~ 212 (354)
. ..+.|+..|+.. ..++.+|.+||+++.+++++++ |+. .|+|+.|+.++...+++.++.+..+. ++-
T Consensus 263 ~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dv 341 (405)
T 4b4t_J 263 GGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGI 341 (405)
T ss_dssp GGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSC
T ss_pred CCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccC
Confidence 1 344566666543 4467788999999999999998 774 79999999999999999887654432 122
Q ss_pred HHHHHHHHcCC
Q 018543 213 FATRLAEKSNR 223 (354)
Q Consensus 213 ~l~~i~~~s~g 223 (354)
.++.+++.+.|
T Consensus 342 dl~~lA~~t~G 352 (405)
T 4b4t_J 342 NLRKVAEKMNG 352 (405)
T ss_dssp CHHHHHHHCCS
T ss_pred CHHHHHHHCCC
Confidence 47888888776
No 41
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.82 E-value=2.6e-18 Score=150.31 Aligned_cols=193 Identities=18% Similarity=0.223 Sum_probs=126.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHhc------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
+.+|++++|++++++.++.++.. ...++++|+||||+|||++|+++++++..+ .+.+++..+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~~~~~~-- 76 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMAGAEFV-- 76 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEETTTTS--
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEechHHHH--
Confidence 46899999999999888876642 122349999999999999999999976221 1111111000
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------------H
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------R 144 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------------~ 144 (354)
..........++.++...... .+.+|+|||+|.+. .
T Consensus 77 -----------------------~~~~~~~~~~~~~~~~~a~~~---------~~~vl~iDeid~l~~~~~~~~~~~~~~ 124 (262)
T 2qz4_A 77 -----------------------EVIGGLGAARVRSLFKEARAR---------APCIVYIDEIDAVGKKRSTTMSGFSNT 124 (262)
T ss_dssp -----------------------SSSTTHHHHHHHHHHHHHHHT---------CSEEEEEECC-----------------
T ss_pred -----------------------hhccChhHHHHHHHHHHHHhc---------CCeEEEEeCcchhhccccccccCccch
Confidence 001111112344444443321 24799999999983 2
Q ss_pred HHHHHHHHHH---hh--ccCceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HH
Q 018543 145 EAQHSLRRTM---EK--YSASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-AT 215 (354)
Q Consensus 145 ~~~~~Ll~~l---e~--~~~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~-l~ 215 (354)
..+..+..++ +. ...++.+|.++|.+..+.+++.+ |+ ..++|++|+.++...+++..+.+.++..+.+. ..
T Consensus 125 ~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~ 204 (262)
T 2qz4_A 125 EEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQ 204 (262)
T ss_dssp --CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHH
T ss_pred hHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHH
Confidence 3334444444 33 23467788889988889999998 88 57999999999999999999998888877664 57
Q ss_pred HHHHHcCCC-HHHHHHHHHHHHhc
Q 018543 216 RLAEKSNRS-LRRAILSFETCRVQ 238 (354)
Q Consensus 216 ~i~~~s~gd-~R~ai~~L~~~~~~ 238 (354)
.++..+.|. .|...++++.++..
T Consensus 205 ~l~~~~~g~~~~~l~~l~~~a~~~ 228 (262)
T 2qz4_A 205 RLAELTPGFSGADIANICNEAALH 228 (262)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHH
Confidence 888888774 44555566655543
No 42
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.81 E-value=1.2e-18 Score=158.01 Aligned_cols=251 Identities=15% Similarity=0.164 Sum_probs=157.4
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|+++++|..+++++|++++++.+...+..+. |++|+||||+|||++++++++.+.++ ...+.+. +..
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~~~---~~~i~~~------~~~- 83 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMDLD---FHRIQFT------PDL- 83 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTTCC---EEEEECC------TTC-
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhCCC---eEEEecC------CCC-
Confidence 48999999999999999999998888887754 59999999999999999999976221 0111100 000
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc----
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---- 157 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~---- 157 (354)
........ ..+... .+... ....+ -...+++|||++.+++..++.|++.|++.
T Consensus 84 ---~~~~l~g~--~~~~~~-~~~~~-----------~~~g~------l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~ 140 (331)
T 2r44_A 84 ---LPSDLIGT--MIYNQH-KGNFE-----------VKKGP------VFSNFILADEVNRSPAKVQSALLECMQEKQVTI 140 (331)
T ss_dssp ---CHHHHHEE--EEEETT-TTEEE-----------EEECT------TCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred ---ChhhcCCc--eeecCC-CCceE-----------eccCc------ccccEEEEEccccCCHHHHHHHHHHHhcCceee
Confidence 00000000 000000 00000 00000 01269999999999999999999999863
Q ss_pred -------cCceeEEEEecCCC-----cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHH--------------------
Q 018543 158 -------SASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK-------------------- 204 (354)
Q Consensus 158 -------~~~~~~Il~~~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~-------------------- 204 (354)
+....+|.++|... .+.+++.+||. .+.+++|+.++..++|++.+..
T Consensus 141 ~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (331)
T 2r44_A 141 GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRN 220 (331)
T ss_dssp TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHH
T ss_pred CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHH
Confidence 23344554444322 38899999998 4999999999999999887654
Q ss_pred --cCCCCCHHHHHHHHHHc-----CC---------------CHHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHH
Q 018543 205 --EGLQLPSGFATRLAEKS-----NR---------------SLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIAS 262 (354)
Q Consensus 205 --~~~~i~~~~l~~i~~~s-----~g---------------d~R~ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 262 (354)
.++.+++++++.+++.+ .+ +.|.++++++.+..... +.....+ ..+.+.+++.
T Consensus 221 ~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~-l~g~~~v----~~~dv~~~~~ 295 (331)
T 2r44_A 221 EINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAF-FNNRDYV----LPEDIKEVAY 295 (331)
T ss_dssp HHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHH-HTTCSBC----CHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHH-HcCCCCC----CHHHHHHHHH
Confidence 26778999999988754 22 69999998875543211 0000101 1244555666
Q ss_pred HHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 018543 263 DIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300 (354)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~ 300 (354)
.++.+....... ....+.++.+|+..+...
T Consensus 296 ~vl~~r~~~~~~--------~~~~~~~~~~i~~~i~~~ 325 (331)
T 2r44_A 296 DILNHRIILNYE--------AEAEGISTRQIIETILRK 325 (331)
T ss_dssp HHHTTTSEECHH--------HHHTTCCHHHHHHHHHHH
T ss_pred HHhHhhccCCHH--------HHhcCCCHHHHHHHHHhc
Confidence 666543222111 112567777777766543
No 43
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=6.4e-19 Score=156.30 Aligned_cols=192 Identities=18% Similarity=0.253 Sum_probs=129.1
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhc-------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
++...+.+|++++|++.+++.+..++.. ....+++|+||||||||++++++++.+..+ .+.+.+
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~---~~~v~~ 84 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT---FIRVVG 84 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE---EEEEEG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEeh
Confidence 3455667899999999999999887743 233459999999999999999999975211 111111
Q ss_pred ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC--------
Q 018543 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-------- 142 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-------- 142 (354)
..+ .. .........++..+...... .+.||+|||+|.+
T Consensus 85 ~~~------------------------~~-~~~~~~~~~~~~~~~~~~~~---------~~~vl~iDEid~l~~~~~~~~ 130 (285)
T 3h4m_A 85 SEL------------------------VK-KFIGEGASLVKDIFKLAKEK---------APSIIFIDEIDAIAAKRTDAL 130 (285)
T ss_dssp GGG------------------------CC-CSTTHHHHHHHHHHHHHHHT---------CSEEEEEETTHHHHBCCSSSC
T ss_pred HHH------------------------HH-hccchHHHHHHHHHHHHHHc---------CCeEEEEECHHHhcccCcccc
Confidence 100 00 00111112344444443332 3479999999987
Q ss_pred ---CHHHHHHHHHHHhh-----ccCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543 143 ---SREAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (354)
Q Consensus 143 ---~~~~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~ 211 (354)
+...+..+...++. ...++.+|++||.++.+.+++.+ |+. .+.|++|+.++...+++..+...++. ++
T Consensus 131 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~ 209 (285)
T 3h4m_A 131 TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-ED 209 (285)
T ss_dssp CGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TT
T ss_pred CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-Cc
Confidence 45566777766653 23467888899999999999998 774 79999999999999999887655543 23
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHH
Q 018543 212 GFATRLAEKSNR-SLRRAILSFE 233 (354)
Q Consensus 212 ~~l~~i~~~s~g-d~R~ai~~L~ 233 (354)
..+..++..+.| ..|...++++
T Consensus 210 ~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 210 VNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp CCHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCHHHHHHHHH
Confidence 347788888777 3444444444
No 44
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2e-18 Score=157.51 Aligned_cols=182 Identities=18% Similarity=0.262 Sum_probs=125.2
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 69 (354)
-+++-...+|+|+.|.+++++.|+..+.. | ..|. +|||||||||||++|+++|+++..+ .+.+.
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~---fi~v~ 248 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT---FLRIV 248 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE---EEEEE
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC---EEEEE
Confidence 34555667999999999999999887641 3 2333 9999999999999999999987221 11111
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (354)
+..+ . +.+-......+++++....... +.||||||+|.+..
T Consensus 249 ~s~l------------------------~-sk~vGesek~ir~lF~~Ar~~a---------P~IIfiDEiDai~~~R~~~ 294 (437)
T 4b4t_I 249 GSEL------------------------I-QKYLGDGPRLCRQIFKVAGENA---------PSIVFIDEIDAIGTKRYDS 294 (437)
T ss_dssp SGGG------------------------C-CSSSSHHHHHHHHHHHHHHHTC---------SEEEEEEEESSSSCCCSCS
T ss_pred HHHh------------------------h-hccCchHHHHHHHHHHHHHhcC---------CcEEEEehhhhhcccCCCC
Confidence 1100 0 0111111235677776655543 37999999998721
Q ss_pred ------H---HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 018543 145 ------E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (354)
Q Consensus 145 ------~---~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~ 210 (354)
. ....|+..|+.. ..++.+|++||+++.+++++.+ |+. .|+|+.|+.++...+++.++.+..+ +
T Consensus 295 ~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--~ 372 (437)
T 4b4t_I 295 NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--S 372 (437)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--C
T ss_pred CCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--C
Confidence 2 334555555543 3467889999999999999998 774 6999999999999999988765443 3
Q ss_pred HH-HHHHHHHHcCC
Q 018543 211 SG-FATRLAEKSNR 223 (354)
Q Consensus 211 ~~-~l~~i~~~s~g 223 (354)
++ .++.|++.+.|
T Consensus 373 ~dvdl~~LA~~T~G 386 (437)
T 4b4t_I 373 EDVNLETLVTTKDD 386 (437)
T ss_dssp SCCCHHHHHHHCCS
T ss_pred CcCCHHHHHHhCCC
Confidence 32 37888887766
No 45
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.80 E-value=8.4e-20 Score=151.83 Aligned_cols=171 Identities=15% Similarity=0.278 Sum_probs=115.1
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|.++|+|.+|++++|+++.++.+..++..+...+++|+||+|+|||++++.+++.+.+...... ..+..+.
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~~~~~~------- 82 (195)
T 1jbk_A 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG-LKGRRVL------- 82 (195)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG-GTTCEEE-------
T ss_pred HHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh-hcCCcEE-------
Confidence 58899999999999999999999999998877777999999999999999999998754221100 0000000
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHHHHHHH
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSLRRT 153 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~Ll~~ 153 (354)
.+.+... .............+++++..+... .++.+++|||+|.+.. ..++.|...
T Consensus 83 -~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~ 146 (195)
T 1jbk_A 83 -ALDMGAL-------VAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPA 146 (195)
T ss_dssp -EECHHHH-------HTTTCSHHHHHHHHHHHHHHHHHS--------TTTEEEEEETGGGGTT------CCCCHHHHHHH
T ss_pred -EeeHHHH-------hccCCccccHHHHHHHHHHHHhhc--------CCCeEEEEeCHHHHhccCcccchHHHHHHHHHh
Confidence 0000000 000000000111234444433331 2347999999999853 236677777
Q ss_pred HhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHH
Q 018543 154 MEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVL 198 (354)
Q Consensus 154 le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L 198 (354)
++. .+..+|++++.+. .+.+++++||..+.|++|+.++..++|
T Consensus 147 ~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 147 LAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred hcc--CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 765 4577888888775 678999999999999999999987764
No 46
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.79 E-value=4.2e-19 Score=177.85 Aligned_cols=199 Identities=15% Similarity=0.240 Sum_probs=142.3
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|+++++|..+++++|+++.++.+...+.....+|+||+||||||||++|+++|+.+.+.+......++.
T Consensus 169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~---------- 238 (758)
T 3pxi_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR---------- 238 (758)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC----------
T ss_pred HHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe----------
Confidence 4889999999999999999999999999888878899999999999999999999875533221111111
Q ss_pred ccccccccccCceeeeCC-CCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543 82 IDLELTTLSSANHVELSP-SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~ 160 (354)
.+.++. ..+.......++.++..+... ++.|+||| ...+.++.|+..|+. ..
T Consensus 239 ------------~~~~~~g~~~~G~~e~~l~~~~~~~~~~---------~~~iLfiD----~~~~~~~~L~~~l~~--~~ 291 (758)
T 3pxi_A 239 ------------VMTLDMGTKYRGEFEDRLKKVMDEIRQA---------GNIILFID----AAIDASNILKPSLAR--GE 291 (758)
T ss_dssp ------------EECC----------CTTHHHHHHHHHTC---------CCCEEEEC----C--------CCCTTS--SS
T ss_pred ------------EEEecccccccchHHHHHHHHHHHHHhc---------CCEEEEEc----CchhHHHHHHHHHhc--CC
Confidence 111111 011111112456666665442 34799999 445678888888874 45
Q ss_pred eeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CH
Q 018543 161 CRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR------SL 225 (354)
Q Consensus 161 ~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~g------d~ 225 (354)
..+|.+||... .+.+++++||..+.|++|+.+++..+|..++.+ .++.++++++..++..+.+ ..
T Consensus 292 v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p 371 (758)
T 3pxi_A 292 LQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (758)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCC
Confidence 78888888877 689999999999999999999999999977665 6788999999999987643 34
Q ss_pred HHHHHHHHHHHh
Q 018543 226 RRAILSFETCRV 237 (354)
Q Consensus 226 R~ai~~L~~~~~ 237 (354)
++++.+++.++.
T Consensus 372 ~~ai~ll~~a~~ 383 (758)
T 3pxi_A 372 DKAIDLIDEAGS 383 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 788988886654
No 47
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.9e-18 Score=158.34 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=123.9
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHh-----------cC-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
.++-.+.+|+|+.|.+++++.|+..+. .| ..|. +|||||||||||++|+++|+++..+ .+.+.+
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~---f~~v~~ 248 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT---FLKLAA 248 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC---EEEEeh
Confidence 344456799999999999999987653 13 2333 9999999999999999999987221 111111
Q ss_pred ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-------
Q 018543 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------- 143 (354)
..+ . +.+-......++.++....... +.||||||+|.+.
T Consensus 249 s~l------------------------~-~~~vGese~~ir~lF~~A~~~a---------P~IifiDEiDal~~~R~~~~ 294 (434)
T 4b4t_M 249 PQL------------------------V-QMYIGEGAKLVRDAFALAKEKA---------PTIIFIDELDAIGTKRFDSE 294 (434)
T ss_dssp GGG------------------------C-SSCSSHHHHHHHHHHHHHHHHC---------SEEEEEECTHHHHCCCSSGG
T ss_pred hhh------------------------h-hcccchHHHHHHHHHHHHHhcC---------CeEEeecchhhhhhccCCCC
Confidence 100 0 0111112235677776655543 3799999998761
Q ss_pred ----HH---HHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543 144 ----RE---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (354)
Q Consensus 144 ----~~---~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~ 211 (354)
.. ..+.|+..|+... .++.+|.+||+++.+++++.+ |+. .|+|+.|+.++...+++.++.+..+.- +
T Consensus 295 ~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-d 373 (434)
T 4b4t_M 295 KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-D 373 (434)
T ss_dssp GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS-C
T ss_pred CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC-c
Confidence 12 2345666665543 456788899999999999988 764 699999999999999998887654421 1
Q ss_pred HHHHHHHHHcCC
Q 018543 212 GFATRLAEKSNR 223 (354)
Q Consensus 212 ~~l~~i~~~s~g 223 (354)
-.++.|++.+.|
T Consensus 374 vdl~~lA~~t~G 385 (434)
T 4b4t_M 374 INWQELARSTDE 385 (434)
T ss_dssp CCHHHHHHHCSS
T ss_pred CCHHHHHHhCCC
Confidence 137788888766
No 48
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6e-18 Score=155.81 Aligned_cols=189 Identities=17% Similarity=0.255 Sum_probs=127.0
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
+++-...+|+|+.|.+++++.|+..+.- | +.|. +|||||||||||++|+++|+++..+ .+.+.+
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~---fi~vs~ 276 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT---FIRVIG 276 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE---EEEEEG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC---eEEEEh
Confidence 3444446999999999999999887631 3 3333 9999999999999999999987321 111111
Q ss_pred ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH------
Q 018543 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------ 144 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------ 144 (354)
..+ . +..-......+++++....... +.||||||+|.+..
T Consensus 277 s~L------------------------~-sk~vGesek~ir~lF~~Ar~~a---------P~IIfiDEiDai~~~R~~~~ 322 (467)
T 4b4t_H 277 SEL------------------------V-QKYVGEGARMVRELFEMARTKK---------ACIIFFDEIDAVGGARFDDG 322 (467)
T ss_dssp GGG------------------------C-CCSSSHHHHHHHHHHHHHHHTC---------SEEEEEECCTTTSBCCSSSS
T ss_pred HHh------------------------h-cccCCHHHHHHHHHHHHHHhcC---------CceEeecccccccccccCcC
Confidence 100 0 0111112235777776655543 37999999998731
Q ss_pred -----H---HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543 145 -----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (354)
Q Consensus 145 -----~---~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~ 211 (354)
. ..+.|+..|+.. ..++.+|++||+++.+.+++++ |+. .|+|+.|+.++...+|+.++.+..+.- +
T Consensus 323 ~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-d 401 (467)
T 4b4t_H 323 AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-G 401 (467)
T ss_dssp CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-S
T ss_pred CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-C
Confidence 1 234455555533 3457788899999999999987 774 699999999999999998876543321 1
Q ss_pred HHHHHHHHHcCC----CHHHHHH
Q 018543 212 GFATRLAEKSNR----SLRRAIL 230 (354)
Q Consensus 212 ~~l~~i~~~s~g----d~R~ai~ 230 (354)
-.++.|++.+.| |++.+.+
T Consensus 402 vdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 402 IRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHHHH
Confidence 237788888776 4444443
No 49
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=7.6e-18 Score=155.42 Aligned_cols=181 Identities=20% Similarity=0.284 Sum_probs=123.6
Q ss_pred cccCCCCCCCcccCHHHHHHHHHHHhc-----------CC-CCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QD-CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
++-...+|+|+.|.+++++.|+..+.. |- .|. +|||||||||||++|+++|+++..+ .+.+++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~---~~~v~~~ 240 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA---FIRVNGS 240 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE---EEEEEGG
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEecc
Confidence 344446899999999999998887641 32 333 9999999999999999999987221 1111111
Q ss_pred cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------
Q 018543 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (354)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------- 143 (354)
.+ . +..-......+++++....... +.|++|||+|.+.
T Consensus 241 ~l------------------------~-~~~~Ge~e~~ir~lF~~A~~~a---------P~IifiDEiD~i~~~R~~~~~ 286 (428)
T 4b4t_K 241 EF------------------------V-HKYLGEGPRMVRDVFRLARENA---------PSIIFIDEVDSIATKRFDAQT 286 (428)
T ss_dssp GT------------------------C-CSSCSHHHHHHHHHHHHHHHTC---------SEEEEEECTHHHHCSCSSSCS
T ss_pred hh------------------------h-ccccchhHHHHHHHHHHHHHcC---------CCeeechhhhhhhccccCCCC
Confidence 00 0 0111112235777776655543 3799999998651
Q ss_pred ------HHHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeec-CCCHHHHHHHHHHHHHHcCCCCCH
Q 018543 144 ------REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRIN-SPTEEQIVKVLEFIAKKEGLQLPS 211 (354)
Q Consensus 144 ------~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~-~~~~~~~~~~L~~~~~~~~~~i~~ 211 (354)
....+.|+..|+.. ..++.+|++||+++.+++++.+ |+. .|+|+ +|+.++...+++.++.+..+. ++
T Consensus 287 ~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~ 365 (428)
T 4b4t_K 287 GSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PE 365 (428)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TT
T ss_pred CCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cc
Confidence 12355677777653 3467889999999999999998 664 69996 789999999999888754432 12
Q ss_pred HHHHHHHHHcCC
Q 018543 212 GFATRLAEKSNR 223 (354)
Q Consensus 212 ~~l~~i~~~s~g 223 (354)
..++.++..+.|
T Consensus 366 ~dl~~lA~~t~G 377 (428)
T 4b4t_K 366 ADLDSLIIRNDS 377 (428)
T ss_dssp CCHHHHHHHTTT
T ss_pred cCHHHHHHHCCC
Confidence 237888888766
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1e-17 Score=154.85 Aligned_cols=185 Identities=16% Similarity=0.212 Sum_probs=125.3
Q ss_pred CCCCCCCcccCHHHHHHHHHHHhc-----------CC-CCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543 8 RPKTLDQVIVHQDIAQNLKKLVTE-----------QD-CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (354)
Q Consensus 8 rP~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 74 (354)
...+|+|+.|.+++++.|+..+.. |- +|. +|||||||||||++|+++|+++..+ .+.+.+..+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~---~~~v~~s~l- 251 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN---FIFSPASGI- 251 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGGGT-
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEehhhh-
Confidence 345899999999999999887742 32 333 9999999999999999999987221 111111100
Q ss_pred ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----------
Q 018543 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------- 144 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---------- 144 (354)
. +.+.......++.++....... +.||||||+|.+..
T Consensus 252 -----------------------~-sk~~Gese~~ir~~F~~A~~~~---------P~IifiDEiDai~~~R~~~~~~~~ 298 (437)
T 4b4t_L 252 -----------------------V-DKYIGESARIIREMFAYAKEHE---------PCIIFMDEVDAIGGRRFSEGTSAD 298 (437)
T ss_dssp -----------------------C-CSSSSHHHHHHHHHHHHHHHSC---------SEEEEEECCCSSSCCCSSSCCSST
T ss_pred -----------------------c-cccchHHHHHHHHHHHHHHhcC---------CceeeeecccccccccccCCCCcc
Confidence 0 0111111234666665554433 48999999998731
Q ss_pred ----HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhh--c-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 018543 145 ----EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (354)
Q Consensus 145 ----~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~ 215 (354)
...+.|+..|+.. ..++.+|++||+++.++++++++ + ..|+|+.|+.++...+++.++.+.... ++-.++
T Consensus 299 ~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~ 377 (437)
T 4b4t_L 299 REIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFE 377 (437)
T ss_dssp THHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHH
T ss_pred hHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHH
Confidence 1345677777644 34578999999999999999886 4 369999999999999999888754432 122378
Q ss_pred HHHHHcCC----CHHHHHH
Q 018543 216 RLAEKSNR----SLRRAIL 230 (354)
Q Consensus 216 ~i~~~s~g----d~R~ai~ 230 (354)
.+++.+.| |++.+.+
T Consensus 378 ~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 378 AAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp HHHHTCCSCCHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHH
Confidence 88888776 4444443
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.78 E-value=8.1e-19 Score=177.68 Aligned_cols=205 Identities=18% Similarity=0.265 Sum_probs=139.9
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|+++|||.+|++++|+++.++.+...+..+..++++|+||||+|||++++.+++.+.+..... ...+
T Consensus 159 ~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~-~l~~----------- 226 (854)
T 1qvr_A 159 DLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE-GLKG----------- 226 (854)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT-TSTT-----------
T ss_pred hHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCch-hhcC-----------
Confidence 4889999999999999999999999998887777899999999999999999999874322110 0000
Q ss_pred ccccccccccCceeeeCCCCC------CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------HHHH
Q 018543 82 IDLELTTLSSANHVELSPSDA------GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQ 147 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------~~~~ 147 (354)
...+.++.... .......++.++..+... .++.|+||||+|.+. .++.
T Consensus 227 ----------~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~--------~~~~iL~IDEi~~l~~~~~~~g~~~~~ 288 (854)
T 1qvr_A 227 ----------KRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS--------QGEVILFIDELHTVVGAGKAEGAVDAG 288 (854)
T ss_dssp ----------CEEEEECC-----------CHHHHHHHHHHHHHTT--------CSSEEEEECCC----------------
T ss_pred ----------CeEEEeehHHhhccCccchHHHHHHHHHHHHHHhc--------CCCeEEEEecHHHHhccCCccchHHHH
Confidence 01112221111 111112344555444331 235799999999986 4456
Q ss_pred HHHHHHHhhccCceeEEEEecCCC----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 018543 148 HSLRRTMEKYSASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE 219 (354)
Q Consensus 148 ~~Ll~~le~~~~~~~~Il~~~~~~----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~ 219 (354)
+.|...++. ....+|+++|.+. .+.+++.+||..+.|++|+.++...+|+..+.. .++.++++++..+++
T Consensus 289 ~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ 366 (854)
T 1qvr_A 289 NMLKPALAR--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAAT 366 (854)
T ss_dssp ---HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred HHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHH
Confidence 678888865 3467888877654 467899999999999999999999999876653 478899999999999
Q ss_pred HcCCC------HHHHHHHHHHHHhc
Q 018543 220 KSNRS------LRRAILSFETCRVQ 238 (354)
Q Consensus 220 ~s~gd------~R~ai~~L~~~~~~ 238 (354)
.+.|. .++++.+++.++..
T Consensus 367 ls~r~i~~~~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 367 LSHRYITERRLPDKAIDLIDEAAAR 391 (854)
T ss_dssp HHHHHCCSSCTHHHHHHHHHHHHHH
T ss_pred HHhhhcccccChHHHHHHHHHHHHH
Confidence 77442 78899988866543
No 52
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.78 E-value=6.7e-19 Score=160.72 Aligned_cols=230 Identities=16% Similarity=0.142 Sum_probs=133.1
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc-ccccccccccccCCCccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-KVKVENKTWKIDAGSRNI 82 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (354)
...-+|.+|++++|++.+++.+......+...+++|+||||||||++|+++++.+...... ...+++..... +..+..
T Consensus 15 ~~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 93 (350)
T 1g8p_A 15 AKTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEM-IPDWAT 93 (350)
T ss_dssp ---CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGG-SCTTCC
T ss_pred CCCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccc-ccchhh
Confidence 3445678999999999988776655544444569999999999999999999966321000 00011111000 000000
Q ss_pred ccccccc-ccCceeeeCCCCCCCcchh-----HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543 83 DLELTTL-SSANHVELSPSDAGFQDRY-----VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (354)
Q Consensus 83 ~~~~~~~-~~~~~i~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~ 156 (354)
+..+... .....+.... +..... .+...+..-...............++||||++.++.+.++.|++.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~---~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~ 170 (350)
T 1g8p_A 94 VLSTNVIRKPTPVVDLPL---GVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS 170 (350)
T ss_dssp CSCCCEEEECCCEEEECT---TCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred hhccccccCCCcccccCC---CcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence 0000000 0000111111 110000 011111110000000000011357999999999999999999999987
Q ss_pred c-------------cCceeEEEEecCCC-cccHHHhhhcce-eeecCCC-HHHHHHHHHHH-------------------
Q 018543 157 Y-------------SASCRLILCCNSSS-KVTEAIRSRCLN-IRINSPT-EEQIVKVLEFI------------------- 201 (354)
Q Consensus 157 ~-------------~~~~~~Il~~~~~~-~l~~~l~sR~~~-i~~~~~~-~~~~~~~L~~~------------------- 201 (354)
. +..+.+|.++|... .+.+++.+||.. +.+++|+ .++...++.++
T Consensus 171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 250 (350)
T 1g8p_A 171 GENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDM 250 (350)
T ss_dssp SEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchH
Confidence 3 23566777777644 799999999976 9999995 55554666542
Q ss_pred ----------HHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHh
Q 018543 202 ----------AKKEGLQLPSGFATRLAEKSNR----SLRRAILSFETCRV 237 (354)
Q Consensus 202 ----------~~~~~~~i~~~~l~~i~~~s~g----d~R~ai~~L~~~~~ 237 (354)
....++.+++++++.|++.+.+ ++|.++++++.+..
T Consensus 251 ~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~ 300 (350)
T 1g8p_A 251 DIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARA 300 (350)
T ss_dssp HHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 2234568999999999998776 89999999986543
No 53
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=2.5e-18 Score=158.74 Aligned_cols=216 Identities=16% Similarity=0.229 Sum_probs=139.8
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhc----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCC---CCcccccccccccc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP---GAEKVKVENKTWKI 75 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~---~~~~~~~~~~~~~~ 75 (354)
|..+|+| ++++|++...+.+..++.. +...+++|+||+|+||||+++.+++.+... ....+.+++....
T Consensus 13 l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~- 88 (386)
T 2qby_A 13 LLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID- 88 (386)
T ss_dssp GSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-
T ss_pred CCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-
Confidence 4566777 7899999999999988874 333459999999999999999999876432 2222223221110
Q ss_pred cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----HHHHHHHH
Q 018543 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLR 151 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----~~~~~~Ll 151 (354)
.... -+..+. ..+.......+.......+.+...+.. .+.+.+|+|||++.+. .+....|+
T Consensus 89 ---~~~~--~~~~i~--~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlilDE~~~l~~~~~~~~l~~l~ 153 (386)
T 2qby_A 89 ---TPYR--VLADLL--ESLDVKVPFTGLSIAELYRRLVKAVRD--------YGSQVVIVLDEIDAFVKKYNDDILYKLS 153 (386)
T ss_dssp ---SHHH--HHHHHT--TTTSCCCCSSSCCHHHHHHHHHHHHHT--------CCSCEEEEEETHHHHHHSSCSTHHHHHH
T ss_pred ---CHHH--HHHHHH--HHhCCCCCCCCCCHHHHHHHHHHHHhc--------cCCeEEEEEcChhhhhccCcCHHHHHHh
Confidence 0000 000000 000110001111111112222222221 1346899999998875 44566667
Q ss_pred HHHhh-ccCceeEEEEecCCC---cccHHHhhhc--ceeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcC-
Q 018543 152 RTMEK-YSASCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKSN- 222 (354)
Q Consensus 152 ~~le~-~~~~~~~Il~~~~~~---~l~~~l~sR~--~~i~~~~~~~~~~~~~L~~~~~~~--~~~i~~~~l~~i~~~s~- 222 (354)
+.++. ...+..+|+++++.+ .+.+.+.+|+ ..+.|+|++.+++..++.+.+... ...+++++++.+++.+.
T Consensus 154 ~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 154 RINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR 233 (386)
T ss_dssp HHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred hchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 76654 234677888888773 6778899998 689999999999999999987653 35788999999999988
Q ss_pred --CCHHHHHHHHHHHHh
Q 018543 223 --RSLRRAILSFETCRV 237 (354)
Q Consensus 223 --gd~R~ai~~L~~~~~ 237 (354)
||+|.++++++.++.
T Consensus 234 ~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 234 EHGDARRALDLLRVSGE 250 (386)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 999999999987654
No 54
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.77 E-value=1.7e-17 Score=145.44 Aligned_cols=209 Identities=14% Similarity=0.125 Sum_probs=125.7
Q ss_pred CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
+|++++|+....+.+...+.. ....+++|+||||||||++|+++++.........+.+++..+.
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~-------------- 69 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-------------- 69 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC--------------
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC--------------
Confidence 789999998877766655542 2234599999999999999999998543222222222222110
Q ss_pred cccCceee--eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc---------
Q 018543 89 LSSANHVE--LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY--------- 157 (354)
Q Consensus 89 ~~~~~~i~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~--------- 157 (354)
. ..++ +.....+..... .......+. .....+++|||++.++.+.|+.|++.+++.
T Consensus 70 --~-~~~~~~l~g~~~~~~~g~-~~~~~~~l~---------~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 70 --E-NLLDSELFGHEAGAFTGA-QKRHPGRFE---------RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp --H-HHHHHHHHCCC----------CCCCHHH---------HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--
T ss_pred --h-hHHHHHhcCCcccccccc-cccccchhh---------hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcc
Confidence 0 0000 000000000000 000000000 012369999999999999999999999863
Q ss_pred --cCceeEEEEecCCC-------cccHHHhhhcc--eeeecCCCH--HHHHHHHHH----HHHHcCC----CCCHHHHHH
Q 018543 158 --SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEF----IAKKEGL----QLPSGFATR 216 (354)
Q Consensus 158 --~~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~----~~~~~~~----~i~~~~l~~ 216 (354)
+.++.+|+++|... .+.+.+.+|+. .+.++|+.. +++..++.+ .+.+.+. .+++++++.
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 34678888888752 46789999985 478888875 566655444 3444554 689999999
Q ss_pred HHHHc-CCCHHHHHHHHHHHHhc--CCCCCCCC
Q 018543 217 LAEKS-NRSLRRAILSFETCRVQ--QYPFKDNQ 246 (354)
Q Consensus 217 i~~~s-~gd~R~ai~~L~~~~~~--~~~~~~~~ 246 (354)
+.... .||+|...+.++.++.. +..++.++
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~~~~~~~i~~~~ 249 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVYRHGTSDYPLDD 249 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHHCCSSSCBCC
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhCCCCcCcHHH
Confidence 98875 89999999999977643 33454443
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.76 E-value=8.5e-18 Score=150.10 Aligned_cols=181 Identities=22% Similarity=0.265 Sum_probs=124.0
Q ss_pred cccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
.++.+.+|++++|++.+++.|+.++.. + ..+ +++|+||||||||++|+++++++. ...+.+++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~ 83 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGP 83 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhH
Confidence 456778999999999999999987753 2 223 499999999999999999999762 111222221
Q ss_pred cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH------
Q 018543 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------ 145 (354)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~------ 145 (354)
.+. + .+. +.. ...++.++...... .+.++||||+|.+...
T Consensus 84 ~l~----------------~----~~~----g~~-~~~~~~~f~~a~~~---------~p~il~iDEid~l~~~~~~~~~ 129 (301)
T 3cf0_A 84 ELL----------------T----MWF----GES-EANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIG 129 (301)
T ss_dssp HHH----------------H----HHH----TTC-TTHHHHHHHHHHHT---------CSEEEEECSTTHHHHHHTTTTC
T ss_pred HHH----------------h----hhc----Cch-HHHHHHHHHHHHhc---------CCeEEEEEChHHHhhccCCCcC
Confidence 110 0 000 000 12345555544332 3479999999987543
Q ss_pred --------HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543 146 --------AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (354)
Q Consensus 146 --------~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~ 212 (354)
.++.|+..|+.. ..++.+|++||.++.+.+++.+ |+. .++|++|+.++...+++.++.+.++. ++.
T Consensus 130 ~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~ 208 (301)
T 3cf0_A 130 DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDV 208 (301)
T ss_dssp CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSC
T ss_pred CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccc
Confidence 367788888743 3467888899999999999988 874 79999999999999999888766543 122
Q ss_pred HHHHHHHHcCC
Q 018543 213 FATRLAEKSNR 223 (354)
Q Consensus 213 ~l~~i~~~s~g 223 (354)
.++.++..+.|
T Consensus 209 ~~~~la~~~~g 219 (301)
T 3cf0_A 209 DLEFLAKMTNG 219 (301)
T ss_dssp CHHHHHHTCSS
T ss_pred hHHHHHHHcCC
Confidence 34556665544
No 56
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.76 E-value=2e-17 Score=155.11 Aligned_cols=195 Identities=17% Similarity=0.239 Sum_probs=132.1
Q ss_pred cccc-cCCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543 3 WVDK-YRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (354)
Q Consensus 3 w~ek-yrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 69 (354)
|.+. ..+.+|+|++|++++++.++..+.. .+.| .++|+||||||||+++++++++...+ .+.++
T Consensus 5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~---f~~is 81 (476)
T 2ce7_A 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP---FFHIS 81 (476)
T ss_dssp CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC---EEEEE
T ss_pred eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---eeeCC
Confidence 4555 4556899999999998888876642 2334 39999999999999999999976221 11122
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (354)
+..+. +. ........++.++...... .+.||||||+|.+..
T Consensus 82 ~~~~~---------------------~~----~~g~~~~~~r~lf~~A~~~---------~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 82 GSDFV---------------------EL----FVGVGAARVRDLFAQAKAH---------APCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp GGGTT---------------------TC----CTTHHHHHHHHHHHHHHHT---------CSEEEEEETGGGTCCC----
T ss_pred HHHHH---------------------HH----HhcccHHHHHHHHHHHHhc---------CCCEEEEechhhhhhhcccc
Confidence 11111 00 0111122455555544332 348999999998742
Q ss_pred ---------HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 018543 145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (354)
Q Consensus 145 ---------~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~ 210 (354)
..++.|+..|+.. ..++.+|.+||.++.+.+++.+ |+. .+.+++|+.++...+++.++.+.. ++
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~ 205 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LA 205 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BC
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--Cc
Confidence 2456777777642 3467788889998888888876 765 799999999999999988776543 33
Q ss_pred HH-HHHHHHHHcCCCH-HHHHHHHHHHH
Q 018543 211 SG-FATRLAEKSNRSL-RRAILSFETCR 236 (354)
Q Consensus 211 ~~-~l~~i~~~s~gd~-R~ai~~L~~~~ 236 (354)
++ .+..++..+.|.. |...++++.++
T Consensus 206 ~~v~l~~la~~t~G~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 206 EDVNLEIIAKRTPGFVGADLENLVNEAA 233 (476)
T ss_dssp TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred chhhHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 33 3778999999876 66667766544
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.76 E-value=1.3e-17 Score=167.08 Aligned_cols=185 Identities=17% Similarity=0.322 Sum_probs=133.4
Q ss_pred CCcccCHHHHHHHHHHHhcC--------CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 13 DQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
++++|++.+++.+...+... ++ ++++|+||||||||++|+++++.+...+...+.+++..+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~--------- 561 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM--------- 561 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC---------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc---------
Confidence 46899999998888777632 11 2599999999999999999999886665555555554333
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh-------
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK------- 156 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~------- 156 (354)
...... + ..+...+.. ..+.||+|||++.++++.++.|++.|++
T Consensus 562 -------~~~~~~------~-------~~l~~~~~~---------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~ 612 (758)
T 3pxi_A 562 -------EKHSTS------G-------GQLTEKVRR---------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSK 612 (758)
T ss_dssp -------SSCCCC----------------CHHHHHH---------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC---
T ss_pred -------cccccc------c-------chhhHHHHh---------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCC
Confidence 000000 0 011111222 1347999999999999999999999987
Q ss_pred ----ccCceeEEEEecCCCc------------ccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHc---------CCCCC
Q 018543 157 ----YSASCRLILCCNSSSK------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE---------GLQLP 210 (354)
Q Consensus 157 ----~~~~~~~Il~~~~~~~------------l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~---------~~~i~ 210 (354)
...++.+|++||.... +.+++.+|| .++.|+|++.+++..++...+.+. .+.++
T Consensus 613 g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 692 (758)
T 3pxi_A 613 GRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELT 692 (758)
T ss_dssp --CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred CCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence 2356789999986543 789999999 789999999999999998876542 34688
Q ss_pred HHHHHHHHHH---cCCCHHHHHHHHHHH
Q 018543 211 SGFATRLAEK---SNRSLRRAILSFETC 235 (354)
Q Consensus 211 ~~~l~~i~~~---s~gd~R~ai~~L~~~ 235 (354)
+++++.|++. ..|++|...+.++..
T Consensus 693 ~~a~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 693 DAAKAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 9999999885 457788777777644
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=3.4e-18 Score=171.43 Aligned_cols=209 Identities=14% Similarity=0.203 Sum_probs=142.8
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|+++++|.+|++++|+++.++.+...+......+++|+||||||||++++.+++.+.+........+...+.
T Consensus 175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~------- 247 (758)
T 1r6b_X 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS------- 247 (758)
T ss_dssp BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-------
T ss_pred hHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-------
Confidence 5889999999999999999999999999877777899999999999999999999875433211111111111
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---------CHHHHHHHHH
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHSLRR 152 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~~~~~Ll~ 152 (354)
.++. .. .............++.+++.+.. .++.++||||+|.+ ..+.++.|..
T Consensus 248 --~~~~-----~l--~~~~~~~g~~e~~l~~~~~~~~~---------~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~ 309 (758)
T 1r6b_X 248 --LDIG-----SL--LAGTKYRGDFEKRFKALLKQLEQ---------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKP 309 (758)
T ss_dssp --CCCC----------CCCCCSSCHHHHHHHHHHHHSS---------SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSS
T ss_pred --EcHH-----HH--hccccccchHHHHHHHHHHHHHh---------cCCeEEEEechHHHhhcCCCCcchHHHHHHHHH
Confidence 0000 00 00011111111234444444322 23489999999988 2334555555
Q ss_pred HHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC
Q 018543 153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR 223 (354)
Q Consensus 153 ~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~g 223 (354)
.++. ....+|.+++.++ .+.+++.+||..+.|++|+.++...+|..++.. .++.++++++..++..+.|
T Consensus 310 ~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~ 387 (758)
T 1r6b_X 310 LLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_dssp CSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Confidence 5553 4567777777542 466889999999999999999999999887765 6888999999999987654
Q ss_pred ------CHHHHHHHHHHHHh
Q 018543 224 ------SLRRAILSFETCRV 237 (354)
Q Consensus 224 ------d~R~ai~~L~~~~~ 237 (354)
...+++.+++.++.
T Consensus 388 ~i~~~~lp~~~i~lld~a~~ 407 (758)
T 1r6b_X 388 YINDRHLPDKAIDVIDEAGA 407 (758)
T ss_dssp HCTTSCTTHHHHHHHHHHHH
T ss_pred hcccccCchHHHHHHHHHHH
Confidence 24477888776543
No 59
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.75 E-value=1.6e-17 Score=159.65 Aligned_cols=195 Identities=16% Similarity=0.244 Sum_probs=122.7
Q ss_pred CCcccCHHHHHHHHHHHh------cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccc
Q 018543 13 DQVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~------~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
++++|++++++.+...+. ....++++|+|||||||||+++++++.+ ......+...+. . +.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~~--~----------~~ 147 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGGV--R----------DE 147 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC----------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEeccc--c----------hh
Confidence 357899999887765543 1234469999999999999999999976 222111111110 0 00
Q ss_pred cccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH----HHHHHHHHHhhcc----
Q 018543 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTMEKYS---- 158 (354)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----~~~~Ll~~le~~~---- 158 (354)
. ..........+. ....+...+.... ....+++|||+|.+..+ .++.|++.|+...
T Consensus 148 ~-----~~~g~~~~~ig~----~~~~~~~~~~~a~-------~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~ 211 (543)
T 3m6a_A 148 S-----EIRGHRRTYVGA----MPGRIIQGMKKAG-------KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSF 211 (543)
T ss_dssp -------------------------CHHHHHHTTC-------SSSEEEEEEESSSCC---------CCGGGTCTTTTTBC
T ss_pred h-----hhhhHHHHHhcc----CchHHHHHHHHhh-------ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhccee
Confidence 0 000000000000 0111111122211 12359999999999877 4588888886432
Q ss_pred -----------CceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHH
Q 018543 159 -----------ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-----KE-----GLQLPSGFATRL 217 (354)
Q Consensus 159 -----------~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~-----~~-----~~~i~~~~l~~i 217 (354)
.++.+|+++|....+.+++++||.+|.|++|+.++...++.+++. +. ++.++++++..+
T Consensus 212 ~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l 291 (543)
T 3m6a_A 212 SDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDI 291 (543)
T ss_dssp CCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHH
T ss_pred ecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHH
Confidence 457889999999999999999999999999999999999987652 22 456789999998
Q ss_pred HHHcC--CCHHHHHHHHHHHH
Q 018543 218 AEKSN--RSLRRAILSFETCR 236 (354)
Q Consensus 218 ~~~s~--gd~R~ai~~L~~~~ 236 (354)
++... |++|..-+.++.++
T Consensus 292 ~~~~~~~~~vR~L~~~i~~~~ 312 (543)
T 3m6a_A 292 IRYYTREAGVRSLERQLAAIC 312 (543)
T ss_dssp HHHHCCCSSSHHHHHHHHHHH
T ss_pred HHhCChhhchhHHHHHHHHHH
Confidence 88544 68888777776544
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=2.7e-17 Score=164.94 Aligned_cols=197 Identities=19% Similarity=0.231 Sum_probs=134.4
Q ss_pred CCcccCHHHHHHHHHHHhc---C-----CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 13 DQVIVHQDIAQNLKKLVTE---Q-----DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~---~-----~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
.+++|++++++.+...+.. | ++ .+++|+||||||||++|+++++.+ +...+.+++..+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~--------- 525 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYM--------- 525 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCS---------
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhc---------
Confidence 3588999999888777653 1 22 259999999999999999999977 1223344433322
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~----- 158 (354)
+. ...-.+.....+.........+...+.. ..+.||+|||++.++++.++.|++.|++..
T Consensus 526 -~~-----~~~~~l~g~~~g~~g~~~~~~l~~~~~~---------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~ 590 (758)
T 1r6b_X 526 -ER-----HTVSRLIGAPPGYVGFDQGGLLTDAVIK---------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNN 590 (758)
T ss_dssp -SS-----SCCSSSCCCCSCSHHHHHTTHHHHHHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETT
T ss_pred -ch-----hhHhhhcCCCCCCcCccccchHHHHHHh---------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCC
Confidence 00 0000111111121110011112222222 234899999999999999999999998742
Q ss_pred ------CceeEEEEecCCC-------------------------cccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHc-
Q 018543 159 ------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE- 205 (354)
Q Consensus 159 ------~~~~~Il~~~~~~-------------------------~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~- 205 (354)
.++.+|++||... .+.+++.+|| .++.|+|++.+++..++...+.+.
T Consensus 591 g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~ 670 (758)
T 1r6b_X 591 GRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQ 670 (758)
T ss_dssp TEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHH
Confidence 4567888888643 5778999999 689999999999999998877532
Q ss_pred --------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 018543 206 --------GLQLPSGFATRLAEKS---NRSLRRAILSFETCR 236 (354)
Q Consensus 206 --------~~~i~~~~l~~i~~~s---~gd~R~ai~~L~~~~ 236 (354)
.+.+++++++.+++.+ ++++|.+.+.++...
T Consensus 671 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 671 VQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp HHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred HHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 3568899999999876 556888887777554
No 61
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.75 E-value=1e-18 Score=144.51 Aligned_cols=157 Identities=18% Similarity=0.269 Sum_probs=108.0
Q ss_pred CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+........ ..+.
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~-~~~~---------- 79 (187)
T 2p65_A 11 DLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDS-LKGR---------- 79 (187)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTT-TTTC----------
T ss_pred HHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcch-hcCC----------
Confidence 58899999999999999999999999988877777999999999999999999998754221100 0000
Q ss_pred ccccccccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------HHH
Q 018543 82 IDLELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REA 146 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~ 146 (354)
..+.+... .........++.++..+... .++.+++|||+|.+. .+.
T Consensus 80 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~vl~iDe~~~l~~~~~~~~~~~~~ 140 (187)
T 2p65_A 80 -----------KLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA--------EGQVVMFIDEIHTVVGAGAVAEGALDA 140 (187)
T ss_dssp -----------EEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT--------TTSEEEEETTGGGGSSSSSSCTTSCCT
T ss_pred -----------eEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc--------CCceEEEEeCHHHhcccccccccchHH
Confidence 00111100 00000011234444443332 234799999999886 455
Q ss_pred HHHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCC
Q 018543 147 QHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPT 190 (354)
Q Consensus 147 ~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~ 190 (354)
++.|...++. ....+|++++.+. .+.+++++||..+.+++|+
T Consensus 141 ~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 141 GNILKPMLAR--GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHHHHHHHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHHHHHHhc--CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 6677777765 4577888888764 5889999999999998885
No 62
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.74 E-value=1.6e-17 Score=153.16 Aligned_cols=193 Identities=18% Similarity=0.205 Sum_probs=123.5
Q ss_pred CcccCHHHHHHHHHHHh----c--------------------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC
Q 018543 14 QVIVHQDIAQNLKKLVT----E--------------------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~----~--------------------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 63 (354)
.++||+++++.+..++. . ...++++|+||||||||++|+++++.+..+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~-- 99 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP-- 99 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC--
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCC--
Confidence 47999999998887762 1 123359999999999999999999976211
Q ss_pred cccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC
Q 018543 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS 143 (354)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~ 143 (354)
.+.+++. ..... .+ .+......+...+... ... . ....+.+++|||+|.+.
T Consensus 100 -~~~~~~~----------------~~~~~---~~----~g~~~~~~~~~~~~~~---~~~-~-~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 100 -IAISDAT----------------SLTEA---GY----VGEDVENILTRLLQAS---DWN-V-QKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp -EEEEEGG----------------GCC---------------CTHHHHHHHHHT---TTC-H-HHHTTSEEEEETGGGC-
T ss_pred -EEEecch----------------hhhhc---Cc----CCccHHHHHHHHHhhc---cch-h-hhcCCeEEEEcCHHHHh
Confidence 1111111 11000 00 0111111223332211 100 0 01234799999999998
Q ss_pred HH--------------HHHHHHHHHhhcc---------------------CceeEEEEecC-------------------
Q 018543 144 RE--------------AQHSLRRTMEKYS---------------------ASCRLILCCNS------------------- 169 (354)
Q Consensus 144 ~~--------------~~~~Ll~~le~~~---------------------~~~~~Il~~~~------------------- 169 (354)
.. .++.|++.|++.. .+..+|+++|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~ 230 (376)
T 1um8_A 151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT 230 (376)
T ss_dssp -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence 87 8999999998541 34566666651
Q ss_pred ----------------------CCcccHHHhhhc-ceeeecCCCHHHHHHHHHH----HHH-------H--cCCCCCHHH
Q 018543 170 ----------------------SSKVTEAIRSRC-LNIRINSPTEEQIVKVLEF----IAK-------K--EGLQLPSGF 213 (354)
Q Consensus 170 ----------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~----~~~-------~--~~~~i~~~~ 213 (354)
...+.+++.+|| .++.|+|++.+++..++.. ++. . .++.+++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 310 (376)
T 1um8_A 231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEA 310 (376)
T ss_dssp CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHH
T ss_pred chhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHH
Confidence 013678999999 7899999999999998862 211 1 245689999
Q ss_pred HHHHHHHcC---CCHHHHHHHHHHHHh
Q 018543 214 ATRLAEKSN---RSLRRAILSFETCRV 237 (354)
Q Consensus 214 l~~i~~~s~---gd~R~ai~~L~~~~~ 237 (354)
++.|++.+. |++|.+.+.++.++.
T Consensus 311 ~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 311 IKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 999999865 999999999987664
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.72 E-value=2.2e-17 Score=167.25 Aligned_cols=200 Identities=18% Similarity=0.285 Sum_probs=136.2
Q ss_pred CCcccCHHHHHHHHHHHhcC--------CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 13 DQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
++++|++.+++.+...+... ++ .+++|+||||||||++|+++++.+.+.....+.+++..+.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~--------- 628 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM--------- 628 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC---------
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc---------
Confidence 46899999998888877542 11 2599999999999999999999887655555555544332
Q ss_pred ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (354)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~----- 158 (354)
+....+ ..+...+...+... ...+...+.. . .+.+|||||++.++++.++.|+++|++..
T Consensus 629 -~~~~~s--~l~g~~~~~~G~~~---~g~l~~~~~~-~--------~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~ 693 (854)
T 1qvr_A 629 -EKHAVS--RLIGAPPGYVGYEE---GGQLTEAVRR-R--------PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH 693 (854)
T ss_dssp -SSGGGG--GC-----------------CHHHHHHH-C--------SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSS
T ss_pred -chhHHH--HHcCCCCCCcCccc---cchHHHHHHh-C--------CCeEEEEecccccCHHHHHHHHHHhccCceECCC
Confidence 000000 00110111111111 1122222222 1 24799999999999999999999998753
Q ss_pred ------CceeEEEEecCC--------------------------CcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHc
Q 018543 159 ------ASCRLILCCNSS--------------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE 205 (354)
Q Consensus 159 ------~~~~~Il~~~~~--------------------------~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~ 205 (354)
.++.+|++||.. ..+.+++.+|| .++.|.|++.+++..++...+.+.
T Consensus 694 g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 694 GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL 773 (854)
T ss_dssp SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 356688888862 24668899999 678999999999999988766521
Q ss_pred ---------CCCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Q 018543 206 ---------GLQLPSGFATRLAEKSN---RSLRRAILSFETCR 236 (354)
Q Consensus 206 ---------~~~i~~~~l~~i~~~s~---gd~R~ai~~L~~~~ 236 (354)
.+.+++++++.|++.+- |++|.+.+.++.+.
T Consensus 774 ~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~ 816 (854)
T 1qvr_A 774 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL 816 (854)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHT
T ss_pred HHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHH
Confidence 24689999999999764 99999998888654
No 64
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.71 E-value=7.2e-16 Score=137.57 Aligned_cols=202 Identities=17% Similarity=0.151 Sum_probs=126.8
Q ss_pred CCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccc
Q 018543 13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
++++|+....+.+...+.. ....+++|+||||||||++|+++++.........+.++|..+. . + ...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~-------~--~--l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN-------E--S--LLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC-------H--H--HHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC-------h--H--HHH
Confidence 4688987777777666654 3334599999999999999999998643322222333322111 0 0 000
Q ss_pred cCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------C
Q 018543 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------A 159 (354)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~ 159 (354)
+ ++.....+..... .......+.. ....++||||++.++.+.|..|++.+++.. .
T Consensus 71 ~----~lfg~~~g~~tg~-~~~~~g~~~~---------a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 S----ELFGHEKGAFTGA-DKRREGRFVE---------ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp H----HHTCCCSSCCC----CCCCCHHHH---------HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred H----HhcCccccccCch-hhhhcCHHHh---------cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 0 0000000000000 0000000000 123689999999999999999999998642 4
Q ss_pred ceeEEEEecCCC-------cccHHHhhhcc--eeeecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc
Q 018543 160 SCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS 221 (354)
Q Consensus 160 ~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~~L~~~~~----~~~---~~i~~~~l~~i~~~s 221 (354)
++++|++||... .+.+.+.+|+. .+++||+. .+++..++.+.+. +.+ ..+++++++.+...+
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence 578888888762 46678999974 46688877 5666666655443 333 568999999999987
Q ss_pred -CCCHHHHHHHHHHHHhcC
Q 018543 222 -NRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 222 -~gd~R~ai~~L~~~~~~~ 239 (354)
.||+|.+.+.++.++...
T Consensus 217 wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 217 WPGNIRELENAIERAVVLL 235 (304)
T ss_dssp CSSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 999999999999877643
No 65
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.71 E-value=2.3e-18 Score=151.35 Aligned_cols=196 Identities=15% Similarity=0.233 Sum_probs=125.0
Q ss_pred cccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 72 (354)
.++.+.+|++++|++.+++.+...+.. ...+ +++|+||||||||++|+++++++..+- +.+++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~v~~~~ 79 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF---FSMGGSS 79 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC---CCCCSCT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEechHH
Confidence 467888999999998888888876651 2333 399999999999999999999863321 1121111
Q ss_pred ccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-------
Q 018543 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------- 145 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~------- 145 (354)
+. .. +... +. ..++..++..... .+.+|+|||+|.+...
T Consensus 80 ~~----------------~~----~~~~--~~---~~~~~~~~~a~~~---------~~~vl~iDEid~l~~~~~~~~~~ 125 (268)
T 2r62_A 80 FI----------------EM----FVGL--GA---SRVRDLFETAKKQ---------APSIIFIDEIDAIGKSRAAGGVV 125 (268)
T ss_dssp TT----------------TS----CSSS--CS---SSSSTTHHHHHHS---------CSCEEEESCGGGTTC--------
T ss_pred HH----------------Hh----hcch--HH---HHHHHHHHHHHhc---------CCeEEEEeChhhhcccccccccC
Confidence 10 00 0000 00 0112223332221 3479999999988643
Q ss_pred --------HHHHHHHHHhhcc---CceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543 146 --------AQHSLRRTMEKYS---ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (354)
Q Consensus 146 --------~~~~Ll~~le~~~---~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~ 211 (354)
.++.|+..++... ..+.+|.++|.++.+.+++.+ |+ ..+.|++|+.++...+++..+....+. ++
T Consensus 126 ~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~ 204 (268)
T 2r62_A 126 SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-ND 204 (268)
T ss_dssp --CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SS
T ss_pred CCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-Cc
Confidence 2455666666542 236677788888888889988 55 469999999999999998877543322 22
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHhc
Q 018543 212 GFATRLAEKSNR-SLRRAILSFETCRVQ 238 (354)
Q Consensus 212 ~~l~~i~~~s~g-d~R~ai~~L~~~~~~ 238 (354)
..++.++..+.| ..|...++++.++..
T Consensus 205 ~~~~~la~~~~g~~g~dl~~l~~~a~~~ 232 (268)
T 2r62_A 205 VNLQEVAKLTAGLAGADLANIINEAALL 232 (268)
T ss_dssp CCTTTTTSSSCSSCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 235667777766 345666666655543
No 66
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.71 E-value=1.1e-16 Score=140.92 Aligned_cols=181 Identities=17% Similarity=0.271 Sum_probs=114.0
Q ss_pred CCcccCHHHHHHHH-------HHHh---cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc
Q 018543 13 DQVIVHQDIAQNLK-------KLVT---EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (354)
Q Consensus 13 ~~~~g~~~~~~~l~-------~~l~---~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
..++|+....+.+. ..+. ....++++|+||||||||++|+++++.+.++ .+.+++ +.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~---~~~i~~-------~~--- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKICS-------PD--- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEEC-------GG---
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---EEEEeC-------HH---
Confidence 45777755443333 2343 2222349999999999999999999975221 111110 00
Q ss_pred cccccccccCceeeeCCCCCCCcc---hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC----------CHHHHHH
Q 018543 83 DLELTTLSSANHVELSPSDAGFQD---RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL----------SREAQHS 149 (354)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l----------~~~~~~~ 149 (354)
.+ .+... ...++..+..... .++.+|||||+|.+ ....++.
T Consensus 100 -------------~~----~g~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~ 153 (272)
T 1d2n_A 100 -------------KM----IGFSETAKCQAMKKIFDDAYK---------SQLSCVVVDDIERLLDYVPIGPRFSNLVLQA 153 (272)
T ss_dssp -------------GC----TTCCHHHHHHHHHHHHHHHHT---------SSEEEEEECCHHHHTTCBTTTTBCCHHHHHH
T ss_pred -------------Hh----cCCchHHHHHHHHHHHHHHHh---------cCCcEEEEEChhhhhccCCCChhHHHHHHHH
Confidence 00 11111 0123344433221 34589999999887 4555666
Q ss_pred HHHHHhh---ccCceeEEEEecCCCcccH-HHhhh-cceeeecCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 018543 150 LRRTMEK---YSASCRLILCCNSSSKVTE-AIRSR-CLNIRINSPTE-EQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR 223 (354)
Q Consensus 150 Ll~~le~---~~~~~~~Il~~~~~~~l~~-~l~sR-~~~i~~~~~~~-~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~g 223 (354)
|...++. ....+.+|.++|.++.+.+ .+++| +..+++++++. +++..++.+ . ..++++.+..+++.+.|
T Consensus 154 L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 154 LLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKG 228 (272)
T ss_dssp HHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTT
T ss_pred HHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcC
Confidence 6666654 2234456666776665655 57888 46799998887 677666654 2 24689999999999988
Q ss_pred -----CHHHHHHHHHHHHh
Q 018543 224 -----SLRRAILSFETCRV 237 (354)
Q Consensus 224 -----d~R~ai~~L~~~~~ 237 (354)
|+|++++.++.+..
T Consensus 229 ~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 229 KKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp SEEEECHHHHHHHHHHHTT
T ss_pred CCccccHHHHHHHHHHHhh
Confidence 99999999998853
No 67
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.70 E-value=1.1e-16 Score=151.19 Aligned_cols=193 Identities=17% Similarity=0.233 Sum_probs=130.5
Q ss_pred ccCCCCCCCcccCHHHHHHHHHHHhc-------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543 6 KYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (354)
Q Consensus 6 kyrP~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 72 (354)
.+++.+|++++|++..++.++.++.. ....++||+||||||||++|+++++++. ...+.+++..
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~vn~~~ 273 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPE 273 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS---SEEEEEEHHH
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC---CCEEEEEchH
Confidence 45678899999999999999887753 2233499999999999999999998751 1112222211
Q ss_pred ccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------
Q 018543 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------- 143 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------- 143 (354)
+. +.........++..+..... ..+.+|||||+|.+.
T Consensus 274 l~-------------------------~~~~g~~~~~~~~~f~~A~~---------~~p~iLfLDEId~l~~~~~~~~~~ 319 (489)
T 3hu3_A 274 IM-------------------------SKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGE 319 (489)
T ss_dssp HH-------------------------TSCTTHHHHHHHHHHHHHHH---------TCSEEEEEESHHHHCBCTTSCCCH
T ss_pred hh-------------------------hhhcchhHHHHHHHHHHHHh---------cCCcEEEecchhhhccccccccch
Confidence 11 00111111234444544333 234799999997664
Q ss_pred --HHHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 018543 144 --REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216 (354)
Q Consensus 144 --~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~ 216 (354)
...++.|++.|+.. ..++.+|.+||.++.+.+++++ |+. .+.|++|+.++...+|+.++....+. .+..+..
T Consensus 320 ~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~ 398 (489)
T 3hu3_A 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQ 398 (489)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHH
T ss_pred HHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHH
Confidence 35788899999854 3467788889999899999999 553 69999999999999999877654443 2234677
Q ss_pred HHHHcCCCHHHHHH-HHHHHH
Q 018543 217 LAEKSNRSLRRAIL-SFETCR 236 (354)
Q Consensus 217 i~~~s~gd~R~ai~-~L~~~~ 236 (354)
++..+.|.....+. +++.++
T Consensus 399 la~~t~g~s~~dL~~L~~~A~ 419 (489)
T 3hu3_A 399 VANETHGHVGADLAALCSEAA 419 (489)
T ss_dssp HHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHH
Confidence 88888885444443 344433
No 68
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.70 E-value=1.7e-16 Score=154.71 Aligned_cols=231 Identities=17% Similarity=0.165 Sum_probs=139.6
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
..+|||++|++++|++.+++.+...+..|. +++|+||||+||||+++++++.+.....+.+.+.+.......+.+..+
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred cccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 468999999999999999999999999885 599999999999999999999654433233333222111000000000
Q ss_pred cccc--------------------------ccccCceeee-CCCCCCC----cchhHHHHHHHHHHhcCCC--CCC----
Q 018543 84 LELT--------------------------TLSSANHVEL-SPSDAGF----QDRYVVQEVIKEMAKNRPI--DTK---- 126 (354)
Q Consensus 84 ~~~~--------------------------~~~~~~~i~~-~~~~~~~----~~~~~i~~~~~~~~~~~~~--~~~---- 126 (354)
.... .......+.. +....+. .......+++..+...... ...
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 0000 0000000000 0000000 0000122222111000000 000
Q ss_pred --------CCCCceEEEEeCCCcCCHHHHHHHHHHHhhc---------------------cCceeEEEEecCC--CcccH
Q 018543 127 --------GKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------------------SASCRLILCCNSS--SKVTE 175 (354)
Q Consensus 127 --------~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~---------------------~~~~~~Il~~~~~--~~l~~ 175 (354)
...+..++||||++.|++..|+.|++.|++. +.++++|+++|.. ..+.+
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 0124469999999999999999999999842 2356788888876 57999
Q ss_pred HHhhhcc----eeeecC---CCHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---CC-------CHHHHHHHHH
Q 018543 176 AIRSRCL----NIRINS---PTEEQIVKVLEFIAKKE-----GLQLPSGFATRLAEKS---NR-------SLRRAILSFE 233 (354)
Q Consensus 176 ~l~sR~~----~i~~~~---~~~~~~~~~L~~~~~~~-----~~~i~~~~l~~i~~~s---~g-------d~R~ai~~L~ 233 (354)
++++||. .+.|++ -..+.+..++..++... ...++++++..+++.+ .| +.|.+.++++
T Consensus 270 ~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr 349 (604)
T 3k1j_A 270 ALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR 349 (604)
T ss_dssp HHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHH
T ss_pred HHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHH
Confidence 9999994 456543 25556777766555432 2578999999999865 56 5999999988
Q ss_pred HHH
Q 018543 234 TCR 236 (354)
Q Consensus 234 ~~~ 236 (354)
.+.
T Consensus 350 ~A~ 352 (604)
T 3k1j_A 350 AAG 352 (604)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 69
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.68 E-value=5.3e-16 Score=146.33 Aligned_cols=195 Identities=17% Similarity=0.280 Sum_probs=126.2
Q ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
|.+. .+.+|+|++|+++++..++..+.. .+.+. ++|+||||||||++++++++.+. ...+.+++
T Consensus 22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---~~~i~i~g 97 (499)
T 2dhr_A 22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG 97 (499)
T ss_dssp ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeh
Confidence 4455 778999999999998888776542 12333 99999999999999999999752 22233332
Q ss_pred ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH------
Q 018543 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------ 144 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------ 144 (354)
..+. + ...+ .....+..+-+... ...+.+++|||+|.+..
T Consensus 98 ~~~~---------------------~---~~~g-----~~~~~v~~lfq~a~-----~~~p~il~IDEId~l~~~r~~~~ 143 (499)
T 2dhr_A 98 SDFV---------------------E---MFVG-----VGAARVRDLFETAK-----RHAPCIVFIDEIDAVGRKRGSGV 143 (499)
T ss_dssp GGGT---------------------S---SCTT-----HHHHHHHHHTTTSS-----SSSSCEEEEECGGGTCCCSSSST
T ss_pred hHHH---------------------H---hhhh-----hHHHHHHHHHHHHH-----hcCCCEEEEehHHHHHHhhccCc
Confidence 2211 0 0001 01111222211111 12357999999987631
Q ss_pred --------HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543 145 --------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (354)
Q Consensus 145 --------~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~ 211 (354)
...+.|+..|+.. .....++.++|.++.+.+++.+++ ..+.+++|+.++..++|+.++. +..+++
T Consensus 144 ~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~ 221 (499)
T 2dhr_A 144 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAE 221 (499)
T ss_dssp TTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCC
T ss_pred CCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCCh
Confidence 2334555555433 233556667778878889999855 3799999999999999987653 455554
Q ss_pred HH-HHHHHHHcCCCH-HHHHHHHHHHHh
Q 018543 212 GF-ATRLAEKSNRSL-RRAILSFETCRV 237 (354)
Q Consensus 212 ~~-l~~i~~~s~gd~-R~ai~~L~~~~~ 237 (354)
++ +..++..+.|+. |...++++.++.
T Consensus 222 dv~l~~lA~~t~G~~gadL~~lv~~Aa~ 249 (499)
T 2dhr_A 222 DVDLALLAKRTPGFVGADLENLLNEAAL 249 (499)
T ss_dssp SSTTHHHHTTSCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44 788999999977 777777776554
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.65 E-value=3.1e-15 Score=130.18 Aligned_cols=194 Identities=17% Similarity=0.268 Sum_probs=123.1
Q ss_pred ccccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
...+.+.+|++++|+++++..++..... -..+ .++|+||||+||||+++++++.+. .+.+.+++.
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~ 83 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGS 83 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHH
Confidence 4567788999999999888777665431 1223 399999999999999999998652 222222222
Q ss_pred cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------
Q 018543 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (354)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------- 143 (354)
.+. .. ..+ .....++.+++.... ..+.++++||+|.+.
T Consensus 84 ~~~---------------------~~---~~~-~~~~~i~~~~~~~~~---------~~~~i~~~Deid~l~~~~~~~~~ 129 (254)
T 1ixz_A 84 DFV---------------------EM---FVG-VGAARVRDLFETAKR---------HAPCIVFIDEIDAVGRKRGSGVG 129 (254)
T ss_dssp HHH---------------------HS---CTT-HHHHHHHHHHHHHTT---------SSSEEEEEETHHHHHC-------
T ss_pred HHH---------------------HH---Hhh-HHHHHHHHHHHHHHh---------cCCeEEEehhhhhhhcccCcccc
Confidence 111 00 000 001123333333211 234799999997652
Q ss_pred ---H---HHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhh--c-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543 144 ---R---EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (354)
Q Consensus 144 ---~---~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~ 212 (354)
. ...+.++..|+... ....++.++|+++.+.+++.+| + ..+.+++|+.++..++++..+. +..++++
T Consensus 130 ~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~ 207 (254)
T 1ixz_A 130 GGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAED 207 (254)
T ss_dssp --CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTT
T ss_pred ccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcc
Confidence 1 12345555554332 2345666778888899999985 4 3699999999999999987653 4555544
Q ss_pred H-HHHHHHHcCCCH-HHHHHHHHHHH
Q 018543 213 F-ATRLAEKSNRSL-RRAILSFETCR 236 (354)
Q Consensus 213 ~-l~~i~~~s~gd~-R~ai~~L~~~~ 236 (354)
. +..++..+.|+. |...++++.++
T Consensus 208 ~~~~~la~~~~G~~~~dl~~~~~~a~ 233 (254)
T 1ixz_A 208 VDLALLAKRTPGFVGADLENLLNEAA 233 (254)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3 788999998865 66666666544
No 71
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.62 E-value=2.3e-14 Score=126.42 Aligned_cols=192 Identities=18% Similarity=0.275 Sum_probs=120.9
Q ss_pred ccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543 6 KYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (354)
Q Consensus 6 kyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 73 (354)
...+.+|++++|+++++..++..... -..+ .++|+||||+||||+++++++.+. .+.+.+++..+
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~ 109 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDF 109 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHH
Confidence 33667899999999988777765532 1223 399999999999999999998652 22222222211
Q ss_pred cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----------
Q 018543 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------- 143 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------- 143 (354)
. .. ..+ .....++.+++.... ..+.++++||+|.+.
T Consensus 110 ~---------------------~~---~~~-~~~~~i~~~~~~~~~---------~~~~i~~iDeid~l~~~~~~~~~~~ 155 (278)
T 1iy2_A 110 V---------------------EM---FVG-VGAARVRDLFETAKR---------HAPCIVFIDEIDAVGRKRGSGVGGG 155 (278)
T ss_dssp H---------------------HS---TTT-HHHHHHHHHHHHHHT---------SCSEEEEEETHHHHHCC--------
T ss_pred H---------------------HH---Hhh-HHHHHHHHHHHHHHh---------cCCcEEehhhhHhhhcccccccCCc
Confidence 1 00 000 011123344433322 124799999997652
Q ss_pred -HHHHH---HHHHHHhhc--cCceeEEEEecCCCcccHHHhhh--c-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-
Q 018543 144 -REAQH---SLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF- 213 (354)
Q Consensus 144 -~~~~~---~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~- 213 (354)
.+... .++..|... .....++.++|+++.+.+++.++ + ..+.|++|+.++..++++..+. +..+++++
T Consensus 156 ~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~ 233 (278)
T 1iy2_A 156 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVD 233 (278)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccC
Confidence 12233 333333322 22355666788888999999985 4 3699999999999999987664 45555443
Q ss_pred HHHHHHHcCCCH-HHHHHHHHHHH
Q 018543 214 ATRLAEKSNRSL-RRAILSFETCR 236 (354)
Q Consensus 214 l~~i~~~s~gd~-R~ai~~L~~~~ 236 (354)
+..++..+.|+. |...++++.++
T Consensus 234 ~~~la~~~~G~~~~dl~~l~~~a~ 257 (278)
T 1iy2_A 234 LALLAKRTPGFVGADLENLLNEAA 257 (278)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 788999999876 55556666554
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.61 E-value=1.8e-15 Score=149.43 Aligned_cols=177 Identities=18% Similarity=0.257 Sum_probs=119.4
Q ss_pred CCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 75 (354)
..+|+|+.|.++.++.|+.++.- | .+| .+|||||||||||++|+++|+++..+ .+.+++..+.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~---~~~v~~~~l~- 275 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPEIM- 275 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE---EEEEEHHHHH-
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe---EEEEEhHHhh-
Confidence 35899999998888888877641 2 233 39999999999999999999865211 1111111100
Q ss_pred cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------
Q 018543 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------- 144 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------- 144 (354)
+.........+++++..... ..+.||||||+|.+.+
T Consensus 276 ------------------------sk~~gese~~lr~lF~~A~~---------~~PsIIfIDEiDal~~~r~~~~~~~~~ 322 (806)
T 3cf2_A 276 ------------------------SKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGEVER 322 (806)
T ss_dssp ------------------------SSCTTHHHHHHHHHHHHHTT---------SCSEEEEEESGGGTCCTTTTCCCTTHH
T ss_pred ------------------------cccchHHHHHHHHHHHHHHH---------cCCeEEEEehhcccccccCCCCChHHH
Confidence 01111122346666655433 2358999999998842
Q ss_pred HHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 018543 145 EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (354)
Q Consensus 145 ~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~ 219 (354)
...+.|+..|+... .++.+|.+||+++.+.+++++ |+. .|+++.|+.++...+|+.++.+..+. ++..+..++.
T Consensus 323 riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~ 401 (806)
T 3cf2_A 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVAN 401 (806)
T ss_dssp HHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHH
T ss_pred HHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHH
Confidence 24566777776542 357788899999999999998 774 69999999999999998766433222 1223777888
Q ss_pred HcCC
Q 018543 220 KSNR 223 (354)
Q Consensus 220 ~s~g 223 (354)
.+.|
T Consensus 402 ~T~G 405 (806)
T 3cf2_A 402 ETHG 405 (806)
T ss_dssp HCCS
T ss_pred hcCC
Confidence 7665
No 73
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.61 E-value=1.5e-15 Score=139.16 Aligned_cols=192 Identities=21% Similarity=0.274 Sum_probs=120.6
Q ss_pred cccCHHHHHHHHHHHh-------------cC--CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543 15 VIVHQDIAQNLKKLVT-------------EQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (354)
Q Consensus 15 ~~g~~~~~~~l~~~l~-------------~~--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
++|++.+++.+..++. .. ...+++|+||||||||++|+++|+.+.. ..+.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~---~~~~~~~~~------- 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV---PFTMADATT------- 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHHH-------
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC---CEEEechHH-------
Confidence 6899999998888773 11 2235999999999999999999997621 111111110
Q ss_pred ccccccccccccCceeeeCCCCC-CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-------------
Q 018543 80 RNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------------- 145 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~------------- 145 (354)
. ..... +......++..+.. .+... ....+.++||||+|.++..
T Consensus 87 ---------l--------~~~~~~g~~~~~~~~~~~~~----~~~~~-~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~ 144 (363)
T 3hws_A 87 ---------L--------TEAGYVGEDVENIIQKLLQK----CDYDV-QKAQRGIVYIDQIDKISRKSDNPSITRDVSGE 144 (363)
T ss_dssp ---------H--------TTCHHHHHHHTHHHHHHHHH----TTTCH-HHHHHCEEEEECHHHHCCCSSCC---CHHHHH
T ss_pred ---------h--------cccccccccHHHHHHHHHHH----hhhhH-HhcCCcEEEEeChhhhcccccccccccccchH
Confidence 0 00000 00001122222222 11000 0123479999999988765
Q ss_pred -HHHHHHHHHhhc---------------------cCceeEEEEecCC----------Cc---------------------
Q 018543 146 -AQHSLRRTMEKY---------------------SASCRLILCCNSS----------SK--------------------- 172 (354)
Q Consensus 146 -~~~~Ll~~le~~---------------------~~~~~~Il~~~~~----------~~--------------------- 172 (354)
.++.|++.|+.. ..+..||++++.. .+
T Consensus 145 ~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~ 224 (363)
T 3hws_A 145 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGE 224 (363)
T ss_dssp HHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHH
T ss_pred HHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHH
Confidence 899999999821 1334456655532 11
Q ss_pred --------------ccHHHhhhcce-eeecCCCHHHHHHHHHH----HHH-------HcC--CCCCHHHHHHHHHH---c
Q 018543 173 --------------VTEAIRSRCLN-IRINSPTEEQIVKVLEF----IAK-------KEG--LQLPSGFATRLAEK---S 221 (354)
Q Consensus 173 --------------l~~~l~sR~~~-i~~~~~~~~~~~~~L~~----~~~-------~~~--~~i~~~~l~~i~~~---s 221 (354)
+.+++.+|+.. +.|.||+.+++.+++.. ... ..+ +.+++++++.|++. .
T Consensus 225 l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~ 304 (363)
T 3hws_A 225 LLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMAR 304 (363)
T ss_dssp HHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCC
Confidence 67899999975 56999999999888875 222 123 35789999999974 4
Q ss_pred CCCHHHHHHHHHHHHhc
Q 018543 222 NRSLRRAILSFETCRVQ 238 (354)
Q Consensus 222 ~gd~R~ai~~L~~~~~~ 238 (354)
.+++|..-+.++.+...
T Consensus 305 ~~gaR~L~~~ie~~~~~ 321 (363)
T 3hws_A 305 KTGARGLRSIVEAALLD 321 (363)
T ss_dssp TCTTTTHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHH
Confidence 67788888888866543
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=1.5e-14 Score=134.79 Aligned_cols=213 Identities=15% Similarity=0.215 Sum_probs=128.7
Q ss_pred cccCCCCCCCcccCHHHHHHHHHHH-hc---C---CCCeEEE--eCCCCCcHHHHHHHHHHHhcCC------CCcccccc
Q 018543 5 DKYRPKTLDQVIVHQDIAQNLKKLV-TE---Q---DCPHLLF--YGPPGSGKKTLIMALLRQVFGP------GAEKVKVE 69 (354)
Q Consensus 5 ekyrP~~~~~~~g~~~~~~~l~~~l-~~---~---~~~~~ll--~Gp~G~GKTtla~~la~~l~~~------~~~~~~~~ 69 (354)
.+|.| ++++|.+...+.|..++ .. + ...++++ +||+|+|||++++.+++.+... ....+.++
T Consensus 17 ~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 17 ENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp TTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 35555 77899988777777776 42 3 3445888 9999999999999999876321 11112222
Q ss_pred cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------
Q 018543 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------ 143 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------ 143 (354)
+.... +... -+..+. ..+.......+.......+.+...+.. .+++.+|||||+|.+.
T Consensus 94 ~~~~~----~~~~--~~~~l~--~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~llvlDe~~~l~~~~~~~ 157 (412)
T 1w5s_A 94 AFNAP----NLYT--ILSLIV--RQTGYPIQVRGAPALDILKALVDNLYV--------ENHYLLVILDEFQSMLSSPRIA 157 (412)
T ss_dssp GGGCC----SHHH--HHHHHH--HHHTCCCCCTTCCHHHHHHHHHHHHHH--------HTCEEEEEEESTHHHHSCTTSC
T ss_pred CCCCC----CHHH--HHHHHH--HHhCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEeCHHHHhhccCcc
Confidence 11000 0000 000000 000000000111111112222222221 1345799999999874
Q ss_pred HHHHHHHHHHHhhcc-----CceeEEEEecCCC---ccc---HHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcC--CCC
Q 018543 144 REAQHSLRRTMEKYS-----ASCRLILCCNSSS---KVT---EAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG--LQL 209 (354)
Q Consensus 144 ~~~~~~Ll~~le~~~-----~~~~~Il~~~~~~---~l~---~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~--~~i 209 (354)
.+....|++.+++.+ .++.+|++++.++ .+. +.+.+++ ..++|+|++.+++.+++.+.+...+ ..+
T Consensus 158 ~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~ 237 (412)
T 1w5s_A 158 AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW 237 (412)
T ss_dssp HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC
T ss_pred hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC
Confidence 356666777776643 4566777877654 233 5566664 3499999999999999998776543 357
Q ss_pred CHHHHHHHHHHcC------CCHHHHHHHHHHHH
Q 018543 210 PSGFATRLAEKSN------RSLRRAILSFETCR 236 (354)
Q Consensus 210 ~~~~l~~i~~~s~------gd~R~ai~~L~~~~ 236 (354)
++++++.+++.++ |++|.++.+++.+.
T Consensus 238 ~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~ 270 (412)
T 1w5s_A 238 EPRHLELISDVYGEDKGGDGSARRAIVALKMAC 270 (412)
T ss_dssp CHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 8999999999999 99999999987654
No 75
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.57 E-value=1.1e-13 Score=122.71 Aligned_cols=154 Identities=17% Similarity=0.194 Sum_probs=93.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 115 (354)
.+||+||||||||++|+++|+++.. ..+.+++..+. + .........+++.++
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~---~~i~v~~~~l~----------------~---------~~~g~~~~~i~~~f~ 89 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGI---NPIMMSAGELE----------------S---------GNAGEPAKLIRQRYR 89 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTC---CCEEEEHHHHH----------------C---------C---HHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC---CEEEEeHHHhh----------------h---------ccCchhHHHHHHHHH
Confidence 3999999999999999999998721 11222221111 0 000111123445554
Q ss_pred HHHhcCCCCCCCCCCceEEEEeCCCcCCH-------------HHHHHHHHHHhh-------------ccCceeEEEEecC
Q 018543 116 EMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------EAQHSLRRTMEK-------------YSASCRLILCCNS 169 (354)
Q Consensus 116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------------~~~~~Ll~~le~-------------~~~~~~~Il~~~~ 169 (354)
....... ...+.||+|||+|.+.. ..++.|+..|+. ...++.+|++||+
T Consensus 90 ~a~~~~~-----~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 90 EAAEIIR-----KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND 164 (293)
T ss_dssp HHHHHHT-----TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred HHHHHHh-----cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence 4321111 13457999999988754 245788888862 2246889999999
Q ss_pred CCcccHHHhh--hcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Q 018543 170 SSKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR-SL 225 (354)
Q Consensus 170 ~~~l~~~l~s--R~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~g-d~ 225 (354)
++.+.+++++ |+..+-+ .|+.++...+++.+....++ +.+.+..+.....| ++
T Consensus 165 ~~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l 220 (293)
T 3t15_A 165 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSI 220 (293)
T ss_dssp CCC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCH
T ss_pred cccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccH
Confidence 9999999986 6654333 46999999999988776654 46666666665443 44
No 76
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.57 E-value=3.2e-14 Score=131.57 Aligned_cols=107 Identities=17% Similarity=0.252 Sum_probs=79.7
Q ss_pred ceEEEEeCCCcCCH------------HHHHHHHHHHhhc----------cCceeEEEEe----cCCCcccHHHhhhcce-
Q 018543 131 FKVLVLNEVDKLSR------------EAQHSLRRTMEKY----------SASCRLILCC----NSSSKVTEAIRSRCLN- 183 (354)
Q Consensus 131 ~~viiiDE~d~l~~------------~~~~~Ll~~le~~----------~~~~~~Il~~----~~~~~l~~~l~sR~~~- 183 (354)
..++++||+|.+.. ..|++|+++||.. ..++.||+++ +++..++|.+++|+.+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 45899999998842 3688999999852 3455566665 2555688999999976
Q ss_pred eeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHH--------cCCCHHHHHHHHHHHHh
Q 018543 184 IRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEK--------SNRSLRRAILSFETCRV 237 (354)
Q Consensus 184 i~~~~~~~~~~~~~L~~-----------~~~~~~~--~i~~~~l~~i~~~--------s~gd~R~ai~~L~~~~~ 237 (354)
+.|++++.+++.+++.. ....+++ .++++++..|++. -+..+|.+-+.++.++.
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 89999999999999941 1112343 6889999999985 35678888877776553
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.56 E-value=1.1e-14 Score=143.94 Aligned_cols=184 Identities=23% Similarity=0.246 Sum_probs=110.3
Q ss_pred CCCCCcccCHHHHHHHHHHHhc-----------CC-CC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTE-----------QD-CP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 76 (354)
.+++++.|.+++++.|+..+.. |. .+ .+|||||||||||.+|+++|.++..+ .+.+.+.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~---f~~v~~~----- 545 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGP----- 545 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE---EEECCHH-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc---eEEeccc-----
Confidence 5789999999999999887642 22 22 29999999999999999999975211 1111110
Q ss_pred CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-----------
Q 018543 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----------- 145 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----------- 145 (354)
++.. .+.......++++++...... +.||||||+|.+-..
T Consensus 546 -------------------~l~s-~~vGese~~vr~lF~~Ar~~~---------P~IifiDEiDsl~~~R~~~~~~~~~~ 596 (806)
T 3cf2_A 546 -------------------ELLT-MWFGESEANVREIFDKARQAA---------PCVLFFDELDSIAKARGGNIGDGGGA 596 (806)
T ss_dssp -------------------HHHT-TTCSSCHHHHHHHHHHHHTTC---------SEEEECSCGGGCC-------------
T ss_pred -------------------hhhc-cccchHHHHHHHHHHHHHHcC---------CceeechhhhHHhhccCCCCCCCchH
Confidence 0000 111122245788877655433 479999999988421
Q ss_pred ---HHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543 146 ---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (354)
Q Consensus 146 ---~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i 217 (354)
..+.|+..|+... .++.+|.+||.++.+.+++.+ |+. .|+|+.|+.++...+++.++.+..+. ++-.++.|
T Consensus 597 ~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~l 675 (806)
T 3cf2_A 597 ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFL 675 (806)
T ss_dssp -CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHH
Confidence 3567888887543 345666789999999999998 774 69999999999999998766543332 12235666
Q ss_pred HHH----cCCCHHHHHHH
Q 018543 218 AEK----SNRSLRRAILS 231 (354)
Q Consensus 218 ~~~----s~gd~R~ai~~ 231 (354)
++. |+.|+..+.+.
T Consensus 676 a~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 676 AKMTNGFSGADLTEICQR 693 (806)
T ss_dssp ----------CHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHH
Confidence 664 45577665554
No 78
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.52 E-value=9.4e-14 Score=131.17 Aligned_cols=191 Identities=13% Similarity=0.110 Sum_probs=117.2
Q ss_pred CCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC
Q 018543 13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
..++|++++++.+...+..+. |++|+||||||||++|+++++.+ +.........+. +. +..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~~-~~---------------t~~ 82 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMTR-FS---------------TPE 82 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECCT-TC---------------CHH
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHHh-cC---------------CHH
Confidence 357899999998888877664 69999999999999999999854 211100000000 00 000
Q ss_pred ceeeeCCCCCCCcchhHHHHH--HHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---------Cce
Q 018543 93 NHVELSPSDAGFQDRYVVQEV--IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------ASC 161 (354)
Q Consensus 93 ~~i~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---------~~~ 161 (354)
+.++ ... .... ...+..... .......|++|||++.+++..++.|+..|++.. ...
T Consensus 83 dL~G-------~~~---~~~~~~~g~~~~~~~---g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~ 149 (500)
T 3nbx_X 83 EVFG-------PLS---IQALKDEGRYERLTS---GYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPM 149 (500)
T ss_dssp HHHC-------CBC-------------CBCCT---TSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCC
T ss_pred HhcC-------ccc---HHHHhhchhHHhhhc---cCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcch
Confidence 0000 000 0000 000100000 000134699999999999999999999997521 122
Q ss_pred eE-EEEecCCC---cccHHHhhhcc-eeeecCCCH-HHHHHHHHHHH-----------------------HHcCCCCCHH
Q 018543 162 RL-ILCCNSSS---KVTEAIRSRCL-NIRINSPTE-EQIVKVLEFIA-----------------------KKEGLQLPSG 212 (354)
Q Consensus 162 ~~-Il~~~~~~---~l~~~l~sR~~-~i~~~~~~~-~~~~~~L~~~~-----------------------~~~~~~i~~~ 212 (354)
++ |++||... ...+++.+|+. .+.+++|+. ++...++.... ...++.++++
T Consensus 150 ~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~ 229 (500)
T 3nbx_X 150 RLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH 229 (500)
T ss_dssp CEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH
T ss_pred hhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH
Confidence 34 66776543 25579999975 488888886 56667775432 1236778899
Q ss_pred HHHHHHHHc----------CCCHHHHHHHHHHH
Q 018543 213 FATRLAEKS----------NRSLRRAILSFETC 235 (354)
Q Consensus 213 ~l~~i~~~s----------~gd~R~ai~~L~~~ 235 (354)
+++++++.. +.+.|.++.++..+
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A 262 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLL 262 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHH
Confidence 999888765 45788877776643
No 79
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.51 E-value=1e-13 Score=114.01 Aligned_cols=134 Identities=20% Similarity=0.256 Sum_probs=82.1
Q ss_pred ccccCCCCCCCccc----CHHHHHHHHHHHhcCC---CCeEEEeCCCCCcHHHHHHHHHHHhc-CCCCcccccccccccc
Q 018543 4 VDKYRPKTLDQVIV----HQDIAQNLKKLVTEQD---CPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKI 75 (354)
Q Consensus 4 ~ekyrP~~~~~~~g----~~~~~~~l~~~l~~~~---~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~ 75 (354)
+++|+|.+|+++++ +..+.+.++.++++-. ...++|+||||+||||+++++++.+. ..+...+.++..
T Consensus 1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~---- 76 (180)
T 3ec2_A 1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK---- 76 (180)
T ss_dssp CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH----
T ss_pred CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH----
Confidence 47999999999986 4566677777776532 23499999999999999999999763 111110001000
Q ss_pred cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC-CCCCCCceEEEEeCCC--cCCHHHHHHHHH
Q 018543 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-TKGKRGFKVLVLNEVD--KLSREAQHSLRR 152 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~viiiDE~d--~l~~~~~~~Ll~ 152 (354)
..+..+...+....... .....++.++||||++ .+++..++.|..
T Consensus 77 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 77 --------------------------------DLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp --------------------------------HHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 00111111111000000 0000135899999997 678888888888
Q ss_pred HHhhcc-CceeEEEEecCCCcc
Q 018543 153 TMEKYS-ASCRLILCCNSSSKV 173 (354)
Q Consensus 153 ~le~~~-~~~~~Il~~~~~~~l 173 (354)
+++... .+..+|++||.+...
T Consensus 125 ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 125 IITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHHHTTCEEEEECCCCSCC
T ss_pred HHHHHHHcCCCEEEEcCCChhH
Confidence 886543 567788888887543
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.50 E-value=1.2e-13 Score=109.47 Aligned_cols=132 Identities=18% Similarity=0.167 Sum_probs=86.9
Q ss_pred CcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc
Q 018543 14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS 91 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
+++|+....+.+...++. ....+++|+||||||||++|+++++.....+...+ +++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~-------------------- 60 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL-------------------- 60 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC--------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC--------------------
Confidence 578988877777766643 33345999999999999999999874322121111 2211
Q ss_pred CceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
...... .....+.. . ...+++|||+|.++++.|..|+..|+..+.++++|++||.+.
T Consensus 61 ---------~~~~~~--~~~~~~~~---a---------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 61 ---------TPDNAP--QLNDFIAL---A---------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSL 117 (145)
T ss_dssp ---------CTTTSS--CHHHHHHH---H---------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCH
T ss_pred ---------CCCcch--hhhcHHHH---c---------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCH
Confidence 100000 11222221 1 125799999999999999999999987777889999999753
Q ss_pred -------cccHHHhhhcc--eeeecCC
Q 018543 172 -------KVTEAIRSRCL--NIRINSP 189 (354)
Q Consensus 172 -------~l~~~l~sR~~--~i~~~~~ 189 (354)
.+.+.+..|+. .|++||+
T Consensus 118 ~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 118 VELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred HHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 46677878864 5777765
No 81
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.49 E-value=6.6e-13 Score=116.49 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=103.1
Q ss_pred cCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543 7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (354)
Q Consensus 7 yrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 73 (354)
+...+|+|+.|.+++++.|+..+.. + ..+ .++|+||||+||||+++++|+.+. . +.+.+++..+
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~-~--~~i~i~g~~l 80 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-L--NFISVKGPEL 80 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT-C--EEEEEETTTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC-C--CEEEEEcHHH
Confidence 3456899999999999888875421 1 223 399999999999999999999652 1 2222222111
Q ss_pred cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH---------
Q 018543 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------- 144 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------- 144 (354)
. +.........++.+++..... .+.++++||+|.+..
T Consensus 81 ~-------------------------~~~~~~~~~~i~~vf~~a~~~---------~p~i~~~Deid~~~~~r~~~~~~~ 126 (274)
T 2x8a_A 81 L-------------------------NMYVGESERAVRQVFQRAKNS---------APCVIFFDEVDALCPRRSDRETGA 126 (274)
T ss_dssp C-------------------------SSTTHHHHHHHHHHHHHHHHT---------CSEEEEEETCTTTCC---------
T ss_pred H-------------------------hhhhhHHHHHHHHHHHHHHhc---------CCCeEeeehhhhhhcccCCCcchH
Confidence 0 000000111244444432222 237999999987631
Q ss_pred --HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHc-CCCCC-HHHHH
Q 018543 145 --EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKE-GLQLP-SGFAT 215 (354)
Q Consensus 145 --~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~-~~~i~-~~~l~ 215 (354)
...+.++..|... .....++.++|+++.+.+++++ |+. .|.++.|+.++...+++.++... ...++ +-.++
T Consensus 127 ~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~ 206 (274)
T 2x8a_A 127 SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLE 206 (274)
T ss_dssp CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHH
T ss_pred HHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHH
Confidence 1234455555432 2345667788899899999987 764 69999999999999999876432 22222 22355
Q ss_pred HHHH
Q 018543 216 RLAE 219 (354)
Q Consensus 216 ~i~~ 219 (354)
.++.
T Consensus 207 ~la~ 210 (274)
T 2x8a_A 207 AIAG 210 (274)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5665
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=1.5e-13 Score=133.17 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=94.1
Q ss_pred CCcccCHHHHHHHHHHHhcCCCC-----------eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543 13 DQVIVHQDIAQNLKKLVTEQDCP-----------HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~~~~~-----------~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
..++|++++++.+...+..|... |+||+||||||||++|+++++.+ ..... ..+. ..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~-~r~~~---~~~~------~~-- 362 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA-PRAVY---TTGK------GS-- 362 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC-SCEEC---CCTT------CS--
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC-CCcee---cCCC------cc--
Confidence 45789999988887777666311 69999999999999999998744 11100 0000 00
Q ss_pred ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (354)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~--- 158 (354)
....+.................. . + .. +...+++|||+|.++++.+++|++.||+..
T Consensus 363 ---~~~~l~~~~~~~~~~g~~~~~~G----~-l---~~---------A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i 422 (595)
T 3f9v_A 363 ---TAAGLTAAVVREKGTGEYYLEAG----A-L---VL---------ADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSI 422 (595)
T ss_dssp ---TTTTSEEECSSGGGTSSCSEEEC----H-H---HH---------HSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEE
T ss_pred ---ccccccceeeeccccccccccCC----e-e---Ee---------cCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEE
Confidence 00000000000000000000000 0 0 00 123699999999999999999999998632
Q ss_pred ----------CceeEEEEecCCC-------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHH
Q 018543 159 ----------ASCRLILCCNSSS-------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK 203 (354)
Q Consensus 159 ----------~~~~~Il~~~~~~-------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~ 203 (354)
.++.+|.++|... .+.+++.||+. ++.+.+++..+...+++++..
T Consensus 423 ~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~ 491 (595)
T 3f9v_A 423 AKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILD 491 (595)
T ss_dssp ESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHT
T ss_pred ecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466788888765 78999999994 555555555454555555544
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.43 E-value=2.5e-13 Score=107.29 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=81.9
Q ss_pred CcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc
Q 018543 14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS 91 (354)
Q Consensus 14 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
+++|+....+.+...++. ....+++|+||||||||++|+++++... ..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~----~~-------------------------- 54 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT----PW-------------------------- 54 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS----CE--------------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC----Ce--------------------------
Confidence 578988877777776653 3334599999999999999998876431 11
Q ss_pred CceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc-cCceeEEEEecCC
Q 018543 92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-SASCRLILCCNSS 170 (354)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~ 170 (354)
+.++..... . ......+ ... +..+++|||++.++.+.|..|++.+++. +.++++|++||.+
T Consensus 55 ---~~~~~~~~~--~-~~~~~~~---~~a---------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 55 ---VSPARVEYL--I-DMPMELL---QKA---------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp ---ECCSSTTHH--H-HCHHHHH---HHT---------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred ---EEechhhCC--h-HhhhhHH---HhC---------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 111111100 0 0012222 111 2268999999999999999999999875 3568899998865
Q ss_pred C-c----ccHHHhhhcc--eeeecCC
Q 018543 171 S-K----VTEAIRSRCL--NIRINSP 189 (354)
Q Consensus 171 ~-~----l~~~l~sR~~--~i~~~~~ 189 (354)
. . +.+.+..|+. .|++||+
T Consensus 117 ~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 117 AGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp TTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred HHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 3 2 4566777754 4677765
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.43 E-value=1.1e-12 Score=131.61 Aligned_cols=184 Identities=18% Similarity=0.255 Sum_probs=120.7
Q ss_pred ccCCCCCCCcccCHHHHHHHHHHHhc-------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543 6 KYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (354)
Q Consensus 6 kyrP~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 72 (354)
.+.+.+|++++|++.+++.|+.++.. ....+++|+|||||||||+++++++.+-. ..+.+++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---~~i~v~~~~ 273 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPE 273 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---EEEEEEHHH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---cEEEEEchH
Confidence 45677899999999988888887753 12234999999999999999999986411 111222111
Q ss_pred ccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------
Q 018543 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------- 143 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------- 143 (354)
+. +.........++.+++..... .+.++|+||+|.+.
T Consensus 274 l~-------------------------~~~~g~~~~~l~~vf~~a~~~---------~p~il~iDEid~l~~~~~~~~~~ 319 (806)
T 1ypw_A 274 IM-------------------------SKLAGESESNLRKAFEEAEKN---------APAIIFIDELDAIAPKREKTHGE 319 (806)
T ss_dssp HS-------------------------SSSTTHHHHHHHHHHHHHHHH---------CSEEEEEESGGGTSCTTSCCCSH
T ss_pred hh-------------------------hhhhhhHHHHHHHHHHHHHhc---------CCcEEEeccHHHhhhccccccch
Confidence 00 001111112345555544332 23799999998764
Q ss_pred --HHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 018543 144 --REAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216 (354)
Q Consensus 144 --~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~ 216 (354)
...++.|+..++... ..+.+|+++|.++.+.+.+++ |+ ..+.++.|+.++...++...+.+..+. ++..+..
T Consensus 320 ~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~ 398 (806)
T 1ypw_A 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQ 398 (806)
T ss_dssp HHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHH
T ss_pred HHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHH
Confidence 235667788886543 456788888998899999988 77 468999999999999998766543332 2223566
Q ss_pred HHHHcCCCHHH
Q 018543 217 LAEKSNRSLRR 227 (354)
Q Consensus 217 i~~~s~gd~R~ 227 (354)
++..+.|..+.
T Consensus 399 la~~t~g~~g~ 409 (806)
T 1ypw_A 399 VANETHGHVGA 409 (806)
T ss_dssp HHHSCSSCCHH
T ss_pred HHHhhcCcchH
Confidence 66666665443
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=3.2e-14 Score=142.60 Aligned_cols=161 Identities=22% Similarity=0.287 Sum_probs=108.7
Q ss_pred cCCCCCCCcccCHHHHHHHHHHHhc-----------C--CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543 7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (354)
Q Consensus 7 yrP~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 73 (354)
..+.+++++.|.+++++.+...+.. + ...+++|+||||||||++++++|+.+.. ..+.+++..+
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~---~~i~v~~~~l 547 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISIKGPEL 547 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC---CCCCCCCSSS
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC---CEEEEechHh
Confidence 3456899999999999999887752 1 2234999999999999999999997622 1122221111
Q ss_pred cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----------
Q 018543 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------- 143 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------- 143 (354)
. ....+. ....++.+++...... +.|+||||+|.+.
T Consensus 548 ~------------------------~~~~g~-~~~~i~~~f~~a~~~~---------p~vl~iDEid~l~~~r~~~~~~~ 593 (806)
T 1ypw_A 548 L------------------------TMWFGE-SEANVREIFDKARQAA---------PCVLFFDELDSIAKARGGNIGDG 593 (806)
T ss_dssp T------------------------TCCTTT-SSHHHHHHHHHHHHHC---------SBCCCCSSHHHHCCTTTTCCSHH
T ss_pred h------------------------hhhcCc-cHHHHHHHHHHHHhcC---------CeEEEEEChhhhhhhccCCCCCc
Confidence 0 000111 1134666666554433 3689999998762
Q ss_pred ----HHHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHH
Q 018543 144 ----REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKK 204 (354)
Q Consensus 144 ----~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~ 204 (354)
....+.|+..|+.. ..++.+|++||.++.+.+++.+ ||. .+.|++|+.++...+++.++.+
T Consensus 594 ~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp HHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred chhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 12345566666533 3457788889999999999998 985 7999999999999999876643
No 86
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.36 E-value=3.1e-11 Score=109.53 Aligned_cols=213 Identities=14% Similarity=0.182 Sum_probs=124.1
Q ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc-cCCCccccc--
Q 018543 8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-DAGSRNIDL-- 84 (354)
Q Consensus 8 rP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 84 (354)
.|..-+.++|.+...+.|..++..+ +.++++||+|+|||++++.+++.. +.+.+++..... ........+
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeecccccccCCCHHHHHH
Confidence 4445678999999999999999876 569999999999999999998864 122333221100 000000000
Q ss_pred cc-cccccC----ce--eeeCCCCCCCc-chhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------HHHHH
Q 018543 85 EL-TTLSSA----NH--VELSPSDAGFQ-DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------EAQHS 149 (354)
Q Consensus 85 ~~-~~~~~~----~~--i~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------~~~~~ 149 (354)
.+ ..+... .. +.+........ ....+.++++.+..... ..++.+|+|||++.++. +....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE-----ELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH-----HHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh-----ccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 00 000000 00 00000000000 00123333333322110 01247999999998763 44555
Q ss_pred HHHHHhhccCceeEEEEecCCC---c------ccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 018543 150 LRRTMEKYSASCRLILCCNSSS---K------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (354)
Q Consensus 150 Ll~~le~~~~~~~~Il~~~~~~---~------l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~ 219 (354)
|...++.. .++.+|++++... . ...++..|. ..+++.|++.++..+++.......|..++++.+..+.+
T Consensus 155 L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~ 233 (350)
T 2qen_A 155 FAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVE 233 (350)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55555543 4677888765432 1 112234344 48999999999999999988877788889999999999
Q ss_pred HcCCCHHHHHHHHH
Q 018543 220 KSNRSLRRAILSFE 233 (354)
Q Consensus 220 ~s~gd~R~ai~~L~ 233 (354)
.++|++.-......
T Consensus 234 ~tgG~P~~l~~~~~ 247 (350)
T 2qen_A 234 LLDGIPGWLVVFGV 247 (350)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHH
Confidence 99999975444443
No 87
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.35 E-value=4.2e-12 Score=109.21 Aligned_cols=135 Identities=14% Similarity=0.205 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCC--CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543 22 AQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (354)
Q Consensus 22 ~~~l~~~l~~~~~--~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (354)
...+..|++.... .+++|+||||||||.+++++|+.+.-. +. ++.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~--G~-------------------------------vn~ 136 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY--GC-------------------------------VNW 136 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE--EE-------------------------------CCT
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc--ce-------------------------------eec
Confidence 3456667765412 249999999999999999999853100 00 000
Q ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHh--------hcc-----CceeEEEE
Q 018543 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME--------KYS-----ASCRLILC 166 (354)
Q Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le--------~~~-----~~~~~Il~ 166 (354)
+.. ..+ ++.....++++.||+. +..++++.++.+++ ... ..+++|++
T Consensus 137 ~~~-----------------~f~--l~~~~~k~i~l~Ee~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIit 196 (267)
T 1u0j_A 137 TNE-----------------NFP--FNDCVDKMVIWWEEGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVT 196 (267)
T ss_dssp TCS-----------------SCT--TGGGSSCSEEEECSCC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEE
T ss_pred ccc-----------------ccc--cccccccEEEEecccc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEE
Confidence 000 000 0111233566666665 44567778888887 433 66889999
Q ss_pred ecCC-----------CcccHHHhhhcceeeec--------CCCHHHHHHHHHHHHHHcCCCCC
Q 018543 167 CNSS-----------SKVTEAIRSRCLNIRIN--------SPTEEQIVKVLEFIAKKEGLQLP 210 (354)
Q Consensus 167 ~~~~-----------~~l~~~l~sR~~~i~~~--------~~~~~~~~~~L~~~~~~~~~~i~ 210 (354)
||.. ....++|+|||.+++|+ +++++++..++... +.++++++
T Consensus 197 sN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 197 SNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE 258 (267)
T ss_dssp ESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred ecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence 9972 25668999999999999 89999999999854 66666654
No 88
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.31 E-value=6.5e-11 Score=108.18 Aligned_cols=191 Identities=18% Similarity=0.236 Sum_probs=122.2
Q ss_pred CCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccc
Q 018543 13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (354)
Q Consensus 13 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
.+++|+......+...+.. ....+++++|++|+||+++++++...- ......+.++|..+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s-~r~~~fv~vnc~~~~---------------- 191 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS-GRKGAFVDLNCASIP---------------- 191 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH-CCCSCEEEEESSSSC----------------
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc-cccCCcEEEEcccCC----------------
Confidence 4577876655555444432 222349999999999999999998743 222113333332111
Q ss_pred cCceeeeCCCCCCCcchhHHHHHHHHHHhcCC-CCCC--------CCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRP-IDTK--------GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (354)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~--------~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~--- 158 (354)
....-.++ +..... +... ...+...+++||++.|+...|..|++.|++..
T Consensus 192 ---------------~~~~~~~l---fg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~ 253 (368)
T 3dzd_A 192 ---------------QELAESEL---FGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTR 253 (368)
T ss_dssp ---------------TTTHHHHH---HEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECC
T ss_pred ---------------hHHHHHHh---cCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCccc
Confidence 00000011 011000 0000 00123579999999999999999999998631
Q ss_pred --------CceeEEEEecCCC-------cccHHHhhhcce--eeecCCCH--HHHHHHHHHHHH----HcC---CCCCHH
Q 018543 159 --------ASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPTE--EQIVKVLEFIAK----KEG---LQLPSG 212 (354)
Q Consensus 159 --------~~~~~Il~~~~~~-------~l~~~l~sR~~~--i~~~~~~~--~~~~~~L~~~~~----~~~---~~i~~~ 212 (354)
.++++|.+||... .+.+.+..|+.+ |++||+.. +++...+.+.+. +.+ ..++++
T Consensus 254 ~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 333 (368)
T 3dzd_A 254 LGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE 333 (368)
T ss_dssp BTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH
T ss_pred CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 2567888888653 466788888764 66888876 676665555443 333 358999
Q ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543 213 FATRLAEKS-NRSLRRAILSFETCRVQ 238 (354)
Q Consensus 213 ~l~~i~~~s-~gd~R~ai~~L~~~~~~ 238 (354)
+++.+..+. .||+|.+.|.++.++..
T Consensus 334 a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 334 TKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 999999987 99999999999988765
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.24 E-value=1.7e-11 Score=97.26 Aligned_cols=120 Identities=18% Similarity=0.348 Sum_probs=74.4
Q ss_pred CCCCCccc--CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543 10 KTLDQVIV--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (354)
Q Consensus 10 ~~~~~~~g--~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
.+|++++. +..++..+..+ ....++|+||+|+||||+++++++.+...+...
T Consensus 14 ~~~~~f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~---------------------- 67 (149)
T 2kjq_A 14 PSFDKFLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNA---------------------- 67 (149)
T ss_dssp CCCCCCCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCE----------------------
T ss_pred cchhhcCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcE----------------------
Confidence 35666643 45555555444 233499999999999999999999764311111
Q ss_pred ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC-cee-EEE
Q 018543 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-SCR-LIL 165 (354)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~-~~~-~Il 165 (354)
+.+...+.... .+ ..++++++|||++.++...+..|+.+++.... +.. +|+
T Consensus 68 -------~~~~~~~~~~~----------~~----------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iii 120 (149)
T 2kjq_A 68 -------AYIDAASMPLT----------DA----------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLL 120 (149)
T ss_dssp -------EEEETTTSCCC----------GG----------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred -------EEEcHHHhhHH----------HH----------HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEE
Confidence 11221111110 00 12348999999999987778888888865432 233 777
Q ss_pred EecCCCc---ccHHHhhhcc
Q 018543 166 CCNSSSK---VTEAIRSRCL 182 (354)
Q Consensus 166 ~~~~~~~---l~~~l~sR~~ 182 (354)
+++.+.. ..+.++||+.
T Consensus 121 ts~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 121 GSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp EESSCTTTSSCCHHHHHHGG
T ss_pred ECCCCHHHccccHHHHHHHh
Confidence 7775432 2299999985
No 90
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.23 E-value=4.9e-10 Score=103.14 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=120.7
Q ss_pred CCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccc
Q 018543 12 LDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (354)
Q Consensus 12 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (354)
+..++|+....+.+...++. ....+++++|++|+||+++|+++...........+.++|..+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~--------------- 200 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP--------------- 200 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC---------------
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC---------------
Confidence 45678876665555554443 2222389999999999999999987432222222222222111
Q ss_pred ccCceeeeCCCCCCCcchhHHHHHHHHHHhcCC-CC-----CC---CCCCceEEEEeCCCcCCHHHHHHHHHHHhhc---
Q 018543 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP-ID-----TK---GKRGFKVLVLNEVDKLSREAQHSLRRTMEKY--- 157 (354)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~-----~~---~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~--- 157 (354)
....-.++ +..... +. .. ...+..+++|||++.|+.+.|..|++.|++.
T Consensus 201 ----------------~~~~~~el---fg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~ 261 (387)
T 1ny5_A 201 ----------------RDIFEAEL---FGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFY 261 (387)
T ss_dssp ----------------HHHHHHHH---HCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEEC
T ss_pred ----------------HHHHHHHh---cCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEE
Confidence 00000000 000000 00 00 0123368999999999999999999999863
Q ss_pred --------cCceeEEEEecCCC-------cccHHHhhhcc--eeeecCCCH--HHHHHHHHHHH----HHcCC---CCCH
Q 018543 158 --------SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIA----KKEGL---QLPS 211 (354)
Q Consensus 158 --------~~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~~~----~~~~~---~i~~ 211 (354)
+.++++|.+||... .+.+.+..|.. .|++||+.. +++..++.+.+ .+.+. .+++
T Consensus 262 ~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 341 (387)
T 1ny5_A 262 RLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTK 341 (387)
T ss_dssp CBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECH
T ss_pred eCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 13577888888642 46677777764 467777753 66665555443 33343 4789
Q ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Q 018543 212 GFATRLAEKS-NRSLRRAILSFETCRVQQ 239 (354)
Q Consensus 212 ~~l~~i~~~s-~gd~R~ai~~L~~~~~~~ 239 (354)
++++.+..+. .||+|...|.++.++...
T Consensus 342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 342 SAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999865 899999999999887653
No 91
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.21 E-value=5e-11 Score=97.88 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCCCC---eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeee
Q 018543 21 IAQNLKKLVTEQDCP---HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~---~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (354)
.+..|+.+++. .| +++|+||||+|||+++.++++.+.+.. +.+
T Consensus 44 f~~~l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i--------------------------------~~f 89 (212)
T 1tue_A 44 FLGALKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV--------------------------------ISF 89 (212)
T ss_dssp HHHHHHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE--------------------------------CCC
T ss_pred HHHHHHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHHHhCCCe--------------------------------eeE
Confidence 35666777763 34 599999999999999999999763210 000
Q ss_pred CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-HHHHHHHHHHHhhcc-------------CceeE
Q 018543 98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYS-------------ASCRL 163 (354)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~-------------~~~~~ 163 (354)
..+ .... .+ .+ ..+.++++|||++.-. ......++..++..+ ...++
T Consensus 90 ans--~s~f---------~l---~~-----l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~Pl 150 (212)
T 1tue_A 90 VNS--TSHF---------WL---EP-----LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPI 150 (212)
T ss_dssp CCS--SSCG---------GG---GG-----GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCE
T ss_pred Eec--cchh---------hh---cc-----cCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCE
Confidence 000 0000 00 01 1234799999998422 112345566665432 23589
Q ss_pred EEEecCC---CcccHHHhhhcceeeecCC
Q 018543 164 ILCCNSS---SKVTEAIRSRCLNIRINSP 189 (354)
Q Consensus 164 Il~~~~~---~~l~~~l~sR~~~i~~~~~ 189 (354)
|++||.. +...+.|.||+..+.|+.+
T Consensus 151 IITtN~~~~~~~~~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 151 LLTTNIHPAKDNRWPYLESRITVFEFPNA 179 (212)
T ss_dssp EEEESSCTTSSSSCHHHHTSCEEEECCSC
T ss_pred EEecCCCcccccchhhhhhhEEEEEcCCC
Confidence 9999974 3566899999999998744
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.21 E-value=6.4e-10 Score=101.01 Aligned_cols=208 Identities=13% Similarity=0.155 Sum_probs=121.2
Q ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc-cCCCccccc-c
Q 018543 8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-DAGSRNIDL-E 85 (354)
Q Consensus 8 rP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 85 (354)
.|...+.++|.+...+.|.. +.. +.++++||+|+|||++++.+++.+... .+.+++..+.. ...+...-. .
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHHHH
Confidence 33456789999999999988 765 579999999999999999999876321 22333221100 000000000 0
Q ss_pred c-ccc--------------ccCce-------eeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC
Q 018543 86 L-TTL--------------SSANH-------VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS 143 (354)
Q Consensus 86 ~-~~~--------------~~~~~-------i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~ 143 (354)
+ ..+ ..... ........ ....+.+++..+.... . ++-+|+|||++.++
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~------~-~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRK---DRLSFANLLESFEQAS------K-DNVIIVLDEAQELV 150 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC--------CCCHHHHHHHHHHTC------S-SCEEEEEETGGGGG
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCc---chhhHHHHHHHHHhcC------C-CCeEEEEECHHHhh
Confidence 0 000 00000 00000000 0112445555544321 1 25799999999875
Q ss_pred H----HHHHHHHHHHhhccCceeEEEEecCCCc---------ccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCC
Q 018543 144 R----EAQHSLRRTMEKYSASCRLILCCNSSSK---------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQL 209 (354)
Q Consensus 144 ~----~~~~~Ll~~le~~~~~~~~Il~~~~~~~---------l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i 209 (354)
. +....|....+.. .+..+|++++.... ...++..|. ..++++|++.++..+++...+...+...
T Consensus 151 ~~~~~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~ 229 (357)
T 2fna_A 151 KLRGVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF 229 (357)
T ss_dssp GCTTCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC
T ss_pred ccCchhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3 3344454444443 35778888775421 112344454 6899999999999999998777667766
Q ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543 210 PSGFATRLAEKSNRSLRRAILSFETC 235 (354)
Q Consensus 210 ~~~~l~~i~~~s~gd~R~ai~~L~~~ 235 (354)
++. ..+.+.++|++.-.......+
T Consensus 230 ~~~--~~i~~~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 230 KDY--EVVYEKIGGIPGWLTYFGFIY 253 (357)
T ss_dssp CCH--HHHHHHHCSCHHHHHHHHHHH
T ss_pred CcH--HHHHHHhCCCHHHHHHHHHHH
Confidence 654 889999999998665555443
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.20 E-value=2.3e-11 Score=101.76 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=44.6
Q ss_pred ccccCCCCCCCcccCH----HHHHHHHHHHhcCC----CCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 4 VDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQD----CPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 4 ~ekyrP~~~~~~~g~~----~~~~~l~~~l~~~~----~~~~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
..+|++.+|+++++.. .+.+.+..++.... ..+++|+||+|+|||++++++++.+...
T Consensus 16 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 16 PREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4578899999999743 35566677776542 1469999999999999999999987543
No 94
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.16 E-value=1.6e-10 Score=108.91 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=43.8
Q ss_pred CCcccccCCCCCCCcc-cCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 1 MLWVDKYRPKTLDQVI-VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 1 ~~w~ekyrP~~~~~~~-g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
.+|.+||||.+|+++- +|..++..+..++..+.. ++++.||||||||+++..++..+...
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4799999999999997 688888888888877653 79999999999999999999887544
No 95
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.06 E-value=4.6e-10 Score=100.01 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=42.2
Q ss_pred cccCCCCCCCcccC----HHHHHHHHHHHhcC---CCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 5 DKYRPKTLDQVIVH----QDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 5 ekyrP~~~~~~~g~----~~~~~~l~~~l~~~---~~~~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.++|.+|+++++. ..+...+..+++.. ...+++|+||||+|||++++++++.+.
T Consensus 116 ~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp GGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678899999863 33555666777652 234599999999999999999999874
No 96
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.99 E-value=4.6e-09 Score=85.73 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=52.4
Q ss_pred CceEEEEeC--C-CcCCHHHHHHHHHHHhhccCceeEEEEec--CCCcccHHHhhh--cceeeecCCCHHHHHHHHH
Q 018543 130 GFKVLVLNE--V-DKLSREAQHSLRRTMEKYSASCRLILCCN--SSSKVTEAIRSR--CLNIRINSPTEEQIVKVLE 199 (354)
Q Consensus 130 ~~~viiiDE--~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~--~~~~l~~~l~sR--~~~i~~~~~~~~~~~~~L~ 199 (354)
+++++++|| + ..+++..++.+.+.+++. ...+|++++ +...+.+.+++| |.++.+.+.+.+++...+.
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 458999999 4 567899999999999873 344677774 556788899998 8899998888766665554
No 97
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.94 E-value=9.4e-10 Score=99.86 Aligned_cols=133 Identities=15% Similarity=0.228 Sum_probs=80.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHH------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVV------ 110 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i------ 110 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+....+. ...+.+.+++.......++
T Consensus 32 ~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~~~~~~~~------------~r~ig~VfQ~~~l~p~ltV~eni~~ 98 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPA------------ERGVGMVFQSYALYPHLSVAENMSF 98 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTCCGG------------GSCEEEECTTCCCCTTSCHHHHHTH
T ss_pred EEEEcCCCchHHHHHHHHHc-CCCCCCeEEEECCEECCCCCHH------------HCCEEEEecCCcCCCCCCHHHHHHH
Confidence 88999999999999999998 7788889998888765411111 0123333333333222122
Q ss_pred ----------------HHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 111 ----------------QEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 111 ----------------~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
.++++.+.- ..+..+|+ ..+++++++||+ ..|++..+..+++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 99 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 222222110 01111221 137899999997 88999998888888866
Q ss_pred ccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 157 YSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 157 ~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
... +..+|++|++.+ ....+.+|+.+
T Consensus 179 l~~~~g~tii~vTHd~~-ea~~~aDri~v 206 (381)
T 3rlf_A 179 LHKRLGRTMIYVTHDQV-EAMTLADKIVV 206 (381)
T ss_dssp HHHHHCCEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHhCCCEEEEEECCHH-HHHHhCCEEEE
Confidence 532 456666666543 33456677643
No 98
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.94 E-value=8.3e-10 Score=95.45 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=76.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-------- 108 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------- 108 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++.... .... .. ...+.+.+++.......
T Consensus 44 ~~l~G~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~--~~~~----~~-----~~~i~~v~q~~~l~~~ltv~enl~~ 111 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIIST-LIKPSSGIVTVFGKNVV--EEPH----EV-----RKLISYLPEEAGAYRNMQGIEYLRF 111 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEETT--TCHH----HH-----HTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECC--ccHH----HH-----hhcEEEEcCCCCCCCCCcHHHHHHH
Confidence 88999999999999999998 66788888888776442 0000 00 01123333322211111
Q ss_pred --------------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 109 --------------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 109 --------------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
.+.+.++.+.- ..+..+|+ ..+++++++||+ ..|++..+..+.+.+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 12222322210 01111221 257899999998 78999999999998876
Q ss_pred cc-CceeEEEEecCCCcccHHHhhhcc
Q 018543 157 YS-ASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 157 ~~-~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.. .+..+|++|++.+ ....+.+|+.
T Consensus 192 l~~~g~tiiivtHd~~-~~~~~~d~v~ 217 (256)
T 1vpl_A 192 ASQEGLTILVSSHNML-EVEFLCDRIA 217 (256)
T ss_dssp HHHTTCEEEEEECCHH-HHTTTCSEEE
T ss_pred HHhCCCEEEEEcCCHH-HHHHHCCEEE
Confidence 53 3455666665543 2334445543
No 99
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.93 E-value=9.9e-10 Score=93.87 Aligned_cols=138 Identities=15% Similarity=0.229 Sum_probs=78.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------- 107 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------- 107 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++..+. ..... +.... ....+.+.+++......
T Consensus 34 ~~iiG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~--~~~~~---~~~~~-~~~~i~~v~Q~~~l~~~~tv~enl~~ 106 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTN--DLDDD---ELTKI-RRDKIGFVFQQFNLIPLLTALENVEL 106 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECT--TCCHH---HHHHH-HHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc-CCCCCceEEEECCEEcc--cCCHH---HHHHH-hhccEEEEecCCccCCCCcHHHHHHH
Confidence 89999999999999999998 67888888888876543 11000 00000 00012222221111110
Q ss_pred ----------------hHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 108 ----------------YVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 108 ----------------~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
..+.+.++.+.- ..+..+|+ ..+++++++||+ ..|++..+..+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~ 186 (235)
T 3tif_A 107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186 (235)
T ss_dssp HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 112223322211 01111221 257899999998 7899999999999
Q ss_pred HHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 153 ~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+.+... +..+|++|++.+ +. .+.+|+.+
T Consensus 187 ~l~~l~~~~g~tvi~vtHd~~-~~-~~~d~i~~ 217 (235)
T 3tif_A 187 LLKKLNEEDGKTVVVVTHDIN-VA-RFGERIIY 217 (235)
T ss_dssp HHHHHHHHHCCEEEEECSCHH-HH-TTSSEEEE
T ss_pred HHHHHHHHcCCEEEEEcCCHH-HH-HhCCEEEE
Confidence 9876532 466777777764 32 45555543
No 100
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.93 E-value=9.8e-10 Score=95.92 Aligned_cols=143 Identities=15% Similarity=0.207 Sum_probs=81.0
Q ss_pred hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC-------
Q 018543 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA------- 102 (354)
Q Consensus 30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------- 102 (354)
..|.. +.|.||+|+||||+++++++ +..+..+.+.+++........ ..... ...+.+.+++.
T Consensus 32 ~~Ge~--~~iiGpnGsGKSTLl~~l~G-l~~p~~G~I~~~G~~i~~~~~------~~~~~--~~~ig~v~Q~~~~~~~~~ 100 (275)
T 3gfo_A 32 KRGEV--TAILGGNGVGKSTLFQNFNG-ILKPSSGRILFDNKPIDYSRK------GIMKL--RESIGIVFQDPDNQLFSA 100 (275)
T ss_dssp ETTSE--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCCSHH------HHHHH--HHSEEEECSSGGGTCCSS
T ss_pred cCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCCeEEEECCEECCcccc------cHHHH--hCcEEEEEcCcccccccC
Confidence 34444 89999999999999999998 677888888888765420000 00000 01122222211
Q ss_pred -------------CCcc---hhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHH
Q 018543 103 -------------GFQD---RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (354)
Q Consensus 103 -------------~~~~---~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (354)
+... ...+.+.++.+.- ..+..+|+ ..+++++++||+ ..|++..+.
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~ 180 (275)
T 3gfo_A 101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180 (275)
T ss_dssp BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 1100 0112223322211 01111221 257899999997 789999999
Q ss_pred HHHHHHhhcc-C-ceeEEEEecCCCcccHHHhhhccee
Q 018543 149 SLRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 149 ~Ll~~le~~~-~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++.+.+.. . +..+|+++++.+ ....+.+|+.++
T Consensus 181 ~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l 217 (275)
T 3gfo_A 181 EIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVM 217 (275)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEE
T ss_pred HHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 9998887653 2 455666666654 344566776433
No 101
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.93 E-value=1.3e-09 Score=94.77 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=78.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc-ccccccccCc----------eeeeCCCCCCC-
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID-LELTTLSSAN----------HVELSPSDAGF- 104 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~i~~~~~~~~~- 104 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++.... ....+.. ..+..+.+.. .+.+.......
T Consensus 40 ~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~--~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 116 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTG-YLSPSHGECHLLGQNLN--SWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGS 116 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTS-SSCCSSCEEEETTEETT--TSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCST
T ss_pred EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECC--cCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcH
Confidence 88999999999999999998 67888888888876543 1110000 0000111100 00000000000
Q ss_pred cchhHHHHHHHHHHhcC-----CCCCCC------------CC------CceEEEEeCC-CcCCHHHHHHHHHHHhhccC-
Q 018543 105 QDRYVVQEVIKEMAKNR-----PIDTKG------------KR------GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA- 159 (354)
Q Consensus 105 ~~~~~i~~~~~~~~~~~-----~~~~~~------------~~------~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~- 159 (354)
.....+.+.++.+.-.. +..+|+ .. +++++++||+ ..|++..+..+++.+.+...
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 117 QDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp THHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 01112333333322110 011121 13 7899999998 78999999999998876532
Q ss_pred -ceeEEEEecCCCcccHHHhhhccee
Q 018543 160 -SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 160 -~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
+..+|++|++. .....+.+|+.++
T Consensus 197 ~~~tvi~vtHdl-~~~~~~~d~v~vl 221 (266)
T 4g1u_C 197 EPLAVCCVLHDL-NLAALYADRIMLL 221 (266)
T ss_dssp SSEEEEEECSCH-HHHHHHCSEEEEE
T ss_pred CCCEEEEEEcCH-HHHHHhCCEEEEE
Confidence 24555555553 4445566665433
No 102
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.92 E-value=1.2e-09 Score=98.56 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=82.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-------- 108 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------- 108 (354)
+.|.||+|+||||++++++. +..++.+.+.+++.++. ..+.+ +.... ...+.+.+++.......
T Consensus 57 ~~IiGpnGaGKSTLlr~i~G-L~~p~~G~I~i~G~~i~--~~~~~---~~~~~--r~~Ig~v~Q~~~l~~~~TV~env~~ 128 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQELT--TLSES---ELTKA--RRQIGMIFQHFNLLSSRTVFGNVAL 128 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECS--SCCHH---HHHHH--HTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHHhc-CCCCCceEEEECCEECC--cCCHH---HHHHH--hCcEEEEeCCCccCCCCCHHHHHHH
Confidence 88999999999999999998 77888888888887554 11100 00000 01133333332221111
Q ss_pred --------------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 109 --------------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 109 --------------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
.+.++++.+.- ..+..+|+ ..+++++++||+ ..|++..+..+++.+.+
T Consensus 129 ~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~ 208 (366)
T 3tui_C 129 PLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208 (366)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 13333333211 11112221 257899999998 78999999999998876
Q ss_pred cc--CceeEEEEecCCCcccHHHhhhccee
Q 018543 157 YS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 157 ~~--~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.. .+..+|++|++. .....+.+|+.++
T Consensus 209 l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl 237 (366)
T 3tui_C 209 INRRLGLTILLITHEM-DVVKRICDCVAVI 237 (366)
T ss_dssp HHHHSCCEEEEEESCH-HHHHHHCSEEEEE
T ss_pred HHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 53 245566666654 4445666776443
No 103
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.89 E-value=2.6e-09 Score=92.68 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=76.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------- 107 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------- 107 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+. ....... .. ...+.+.+++......
T Consensus 53 ~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~i~-~~~~~~~--~~-----~~~i~~v~Q~~~l~~~~tv~e~l~~ 123 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNL-LEDFDEGEIIIDGINLK-AKDTNLN--KV-----REEVGMVFQRFNLFPHMTVLNNITL 123 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEESS-STTCCHH--HH-----HHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCcEEEECCEECC-CccccHH--HH-----hCcEEEEeCCCcCCCCCCHHHHHHH
Confidence 88999999999999999998 66788888888776442 0000000 00 0012222222111111
Q ss_pred --------------hHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHh
Q 018543 108 --------------YVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (354)
Q Consensus 108 --------------~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le 155 (354)
..+.++++.+.-. .+..+|+ ..+++++++||+ ..|++..+..+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~ 203 (263)
T 2olj_A 124 APMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203 (263)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1122222222100 0111221 257899999998 7899999999999887
Q ss_pred hcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543 156 KYS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 156 ~~~-~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+.. .+..+|++|++. .....+.+|+.+
T Consensus 204 ~l~~~g~tvi~vtHd~-~~~~~~~d~v~~ 231 (263)
T 2olj_A 204 QLANEGMTMVVVTHEM-GFAREVGDRVLF 231 (263)
T ss_dssp HHHHTTCEEEEECSCH-HHHHHHCSEEEE
T ss_pred HHHhCCCEEEEEcCCH-HHHHHhCCEEEE
Confidence 653 345556655553 334455666543
No 104
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.88 E-value=2e-09 Score=93.36 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=78.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc----------CceeeeCCCC--CC-
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS----------ANHVELSPSD--AG- 103 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~--~~- 103 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++.......+.......+..+.+ .+.+.+.... .+
T Consensus 36 ~~liG~nGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~ 114 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITG-FLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESP 114 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCH
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCc
Confidence 88999999999999999998 6677888888877654300000000000111111 0111111110 01
Q ss_pred ----------Ccc---hhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 104 ----------FQD---RYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 104 ----------~~~---~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
... ...+.++++.+.-. .+..+|+ ..+++++++||+ ..|++..+..+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~ 194 (257)
T 1g6h_A 115 LNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194 (257)
T ss_dssp HHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred ccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 011 11233444333111 0111221 157899999997 8899999999999
Q ss_pred HHhhcc-CceeEEEEecCCCcccHHHhhhcc
Q 018543 153 TMEKYS-ASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 153 ~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+.+.. .+..+|+++++.+. ...+.+|+.
T Consensus 195 ~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~ 224 (257)
T 1g6h_A 195 HVLELKAKGITFLIIEHRLDI-VLNYIDHLY 224 (257)
T ss_dssp HHHHHHHTTCEEEEECSCCST-TGGGCSEEE
T ss_pred HHHHHHHCCCEEEEEecCHHH-HHHhCCEEE
Confidence 887653 34566666666543 345666654
No 105
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.88 E-value=1e-08 Score=112.75 Aligned_cols=146 Identities=18% Similarity=0.264 Sum_probs=90.1
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCC
Q 018543 24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103 (354)
Q Consensus 24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 103 (354)
.+..++..++ ++||+||||||||++|+.++... ++.. .+.++.+...
T Consensus 1259 ll~~~l~~~~--~vLL~GPpGtGKT~la~~~l~~~--~~~~-----------------------------~~~infsa~t 1305 (2695)
T 4akg_A 1259 IFYDLLNSKR--GIILCGPPGSGKTMIMNNALRNS--SLYD-----------------------------VVGINFSKDT 1305 (2695)
T ss_dssp HHHHHHHHTC--EEEEECSTTSSHHHHHHHHHHSC--SSCE-----------------------------EEEEECCTTC
T ss_pred HHHHHHHCCC--eEEEECCCCCCHHHHHHHHHhcC--CCCc-----------------------------eEEEEeecCC
Confidence 4455666553 59999999999999996665432 1100 1122222111
Q ss_pred CcchhHHHHHHHHHHhcC----CCC-CC-CCCCceEEEEeCCCcCCH------HHHHHHHHHHhhcc------------C
Q 018543 104 FQDRYVVQEVIKEMAKNR----PID-TK-GKRGFKVLVLNEVDKLSR------EAQHSLRRTMEKYS------------A 159 (354)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~----~~~-~~-~~~~~~viiiDE~d~l~~------~~~~~Ll~~le~~~------------~ 159 (354)
. ...++..+....... ... .+ ..+++-|+||||++.... ...+.|+..+|... .
T Consensus 1306 s--~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~ 1383 (2695)
T 4akg_A 1306 T--TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIE 1383 (2695)
T ss_dssp C--HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEE
T ss_pred C--HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEec
Confidence 1 122333333321110 000 01 134557999999875432 35667777776411 2
Q ss_pred ceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH
Q 018543 160 SCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK 204 (354)
Q Consensus 160 ~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~ 204 (354)
++.+|.++|.+. .+.+++.+||.++.++.|+.+++..++..+...
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred CEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHH
Confidence 356778888773 799999999999999999999999999988754
No 106
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.88 E-value=1.4e-09 Score=92.36 Aligned_cols=127 Identities=18% Similarity=0.216 Sum_probs=71.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-------- 108 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------- 108 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++.... ..... +.... ....+.+.+++.......
T Consensus 33 ~~iiG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~---~~~~~-~~~~i~~v~q~~~l~~~~tv~e~l~~ 105 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGL-LDAPTEGKVFLEGKEVD--YTNEK---ELSLL-RNRKLGFVFQFHYLIPELTALENVIV 105 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTT-SSCCSEEEEEETTEECC--SSCHH---HHHHH-HHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECC--CCCHH---HHHHH-HhCcEEEEecCcccCCCCCHHHHHHh
Confidence 88999999999999999997 66778888888776543 10000 00000 001122222222111111
Q ss_pred --------------HHHHHHHHHHhcC-----CCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 109 --------------VVQEVIKEMAKNR-----PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 109 --------------~i~~~~~~~~~~~-----~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
.+.++++.+.-.. +..+|+ ..+++++++||+ ..|++.....+.+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 185 (224)
T 2pcj_A 106 PMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185 (224)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 1222222221100 001121 257899999998 78999999999998866
Q ss_pred cc-CceeEEEEecCC
Q 018543 157 YS-ASCRLILCCNSS 170 (354)
Q Consensus 157 ~~-~~~~~Il~~~~~ 170 (354)
.. .+..+|++|++.
T Consensus 186 l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 186 INEGGTSIVMVTHER 200 (224)
T ss_dssp HHHTTCEEEEECSCH
T ss_pred HHHCCCEEEEEcCCH
Confidence 53 345666666664
No 107
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.87 E-value=2.7e-09 Score=96.18 Aligned_cols=138 Identities=18% Similarity=0.255 Sum_probs=80.4
Q ss_pred hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh-
Q 018543 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY- 108 (354)
Q Consensus 30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~- 108 (354)
..|.. +.|.||+|+||||+++++++ +..++.+.+.+++..+.. .+.. ...+.+.+++.......
T Consensus 39 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~-~~~~-----------~r~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 39 REGEM--VGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGKRVTD-LPPQ-----------KRNVGLVFQNYALFQHMT 103 (355)
T ss_dssp ETTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTT-CCGG-----------GSSEEEECGGGCCCTTSC
T ss_pred CCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECCc-CChh-----------hCcEEEEecCcccCCCCC
Confidence 34544 88999999999999999998 678888888888765531 0000 01122222222111111
Q ss_pred ---------------------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHH
Q 018543 109 ---------------------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (354)
Q Consensus 109 ---------------------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (354)
.+.++++.+.- ..+..+|+ ..+++++++||+ ..|++.....
T Consensus 104 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 183 (355)
T 1z47_A 104 VYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE 183 (355)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 12223322210 01111221 257899999997 8899999988
Q ss_pred HHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 150 Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+++.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus 184 l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~v 218 (355)
T 1z47_A 184 LRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLV 218 (355)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEE
Confidence 8888866432 455666666543 33455666543
No 108
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.87 E-value=2.7e-09 Score=96.41 Aligned_cols=133 Identities=16% Similarity=0.269 Sum_probs=79.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------- 107 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------- 107 (354)
+.|.||+|+||||+.+++++ +..++.+.+.+++..+....+. + ..+.+.+++......
T Consensus 32 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~-~-----------r~ig~v~Q~~~l~~~ltv~eni~~ 98 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPK-Y-----------REVGMVFQNYALYPHMTVFENIAF 98 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGG-G-----------TTEEEECSSCCCCTTSCHHHHHHG
T ss_pred EEEEcCCCchHHHHHHHHHC-CCCCCccEEEECCEECCCCChh-h-----------CcEEEEecCcccCCCCCHHHHHHH
Confidence 88999999999999999998 6788888888888765310010 0 112222222111111
Q ss_pred -------------hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 108 -------------YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 108 -------------~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
..+.++++.+.- ..+..+|+ ..+++++++||+ ..|++.....++..+.+
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 99 PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178 (359)
T ss_dssp GGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 123344433211 11112221 257899999997 78999999888888866
Q ss_pred ccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 157 YSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 157 ~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
... +..+|++|++.+ ....+.+|+.+
T Consensus 179 l~~~~g~tvi~vTHd~~-~~~~~adri~v 206 (359)
T 2yyz_A 179 LQQELGITSVYVTHDQA-EAMTMASRIAV 206 (359)
T ss_dssp HHHHHCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHhcCCEEEEEcCCHH-HHHHhCCEEEE
Confidence 432 456677666643 33455666543
No 109
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.86 E-value=3.4e-09 Score=95.91 Aligned_cols=132 Identities=20% Similarity=0.321 Sum_probs=79.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH-------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV------- 109 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------- 109 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+....+. ...+.+.+++.......+
T Consensus 32 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~------------~r~ig~v~Q~~~l~~~ltv~eni~~ 98 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTELPPK------------DRNVGLVFQNWALYPHMTVYKNIAF 98 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGG------------GTTEEEECTTCCCCTTSCHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHhc-CCCCCceEEEECCEECCcCCHh------------HCcEEEEecCcccCCCCCHHHHHHH
Confidence 88999999999999999998 6788888888888755310000 112333333332222111
Q ss_pred ---------------HHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 110 ---------------VQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 110 ---------------i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
+.+.++.+.-. .+..+|+ ..+++++++||+ ..|++.....++..+.+
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (362)
T 2it1_A 99 PLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR 178 (362)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 22222221110 0111221 257899999997 88999999888888866
Q ss_pred ccC--ceeEEEEecCCCcccHHHhhhcc
Q 018543 157 YSA--SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 157 ~~~--~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
... +..+|++|++.+. ...+.+|+.
T Consensus 179 l~~~~g~tvi~vTHd~~~-a~~~adri~ 205 (362)
T 2it1_A 179 LQKELGITTVYVTHDQAE-ALAMADRIA 205 (362)
T ss_dssp HHHHHTCEEEEEESCHHH-HHHHCSEEE
T ss_pred HHHhCCCEEEEECCCHHH-HHHhCCEEE
Confidence 532 4567777766433 345556654
No 110
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.85 E-value=3.4e-08 Score=91.05 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=102.3
Q ss_pred cccCHHHHHHHHHHHhcCC-----CCeEEEeCCCCCcHHHHHHHH-HHHhcCCCCcccccccccccccCCCccccccccc
Q 018543 15 VIVHQDIAQNLKKLVTEQD-----CPHLLFYGPPGSGKKTLIMAL-LRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (354)
Q Consensus 15 ~~g~~~~~~~l~~~l~~~~-----~~~~ll~Gp~G~GKTtla~~l-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
++||+.++..+.-.+-.|. -.|+||.|+||+ ||.+++++ ++ +.... +...+. .+ ....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~-i~pR~---~ft~g~-----~s------s~~g 278 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDH-LAPRG---VYVDLR-----RT------ELTD 278 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHH-TCSSE---EEEEGG-----GC------CHHH
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHH-hCCCe---EEecCC-----CC------CccC
Confidence 8899999888877776653 126999999999 99999999 65 43211 100000 00 0000
Q ss_pred cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc---------cC
Q 018543 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------SA 159 (354)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~---------~~ 159 (354)
+... ...+ .+ .. .....+ . .+...++++||++.+++..|.+|++.||+. +.
T Consensus 279 Lt~s---~r~~--tG-~~-~~~G~l----~---------LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lpa 338 (506)
T 3f8t_A 279 LTAV---LKED--RG-WA-LRAGAA----V---------LADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNA 338 (506)
T ss_dssp HSEE---EEES--SS-EE-EEECHH----H---------HTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEEC
T ss_pred ceEE---EEcC--CC-cc-cCCCee----E---------EcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCC
Confidence 0000 0011 01 00 000000 0 122379999999999999999999999863 45
Q ss_pred ceeEEEEecCCC-----------cccHHHhhhcceee--ec-------------CCCHHHHHHHHHHHH-HHcCCCCCHH
Q 018543 160 SCRLILCCNSSS-----------KVTEAIRSRCLNIR--IN-------------SPTEEQIVKVLEFIA-KKEGLQLPSG 212 (354)
Q Consensus 160 ~~~~Il~~~~~~-----------~l~~~l~sR~~~i~--~~-------------~~~~~~~~~~L~~~~-~~~~~~i~~~ 212 (354)
.+.+|.++|... .+.+++.||+..+. .. ..+.+++.+++...- ..-...++++
T Consensus 339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~e 418 (506)
T 3f8t_A 339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEE 418 (506)
T ss_dssp CCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHH
T ss_pred CeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHH
Confidence 677777777654 78999999994322 22 234445555554332 1225667888
Q ss_pred HHHHHHHHc
Q 018543 213 FATRLAEKS 221 (354)
Q Consensus 213 ~l~~i~~~s 221 (354)
+.++|++..
T Consensus 419 a~~yI~~~y 427 (506)
T 3f8t_A 419 ARKRLEHWY 427 (506)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777653
No 111
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.85 E-value=4.4e-09 Score=95.68 Aligned_cols=139 Identities=16% Similarity=0.276 Sum_probs=80.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-------- 108 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------- 108 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+. ...... ... .....+.+.+++.......
T Consensus 32 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~--~~~~~~--~~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~ 104 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVA--DPEKGI--FVP--PKDRDIAMVFQSYALYPHMTVYDNIAF 104 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEE--EGGGTE--ECC--GGGSSEEEECSCCCCCTTSCHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHc-CCCCCccEEEECCEECc--cccccc--cCC--HhHCCEEEEeCCCccCCCCCHHHHHHH
Confidence 88999999999999999998 67888888888887654 100000 000 0011233333333222211
Q ss_pred --------------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543 109 --------------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 109 --------------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~ 156 (354)
.+.++++.+.- ..+..+|+ ..+++++++||+ ..|++.....++..+.+
T Consensus 105 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 105 PLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 12233332211 01111221 157899999997 78999999888888866
Q ss_pred ccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543 157 YSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 157 ~~~--~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
... +..+|++|++.+ ....+.+|+.+
T Consensus 185 l~~~~g~tvi~vTHd~~-~a~~~adri~v 212 (372)
T 1g29_1 185 LQRQLGVTTIYVTHDQV-EAMTMGDRIAV 212 (372)
T ss_dssp HHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHhcCCEEEEECCCHH-HHHHhCCEEEE
Confidence 432 456777766643 33455666543
No 112
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.84 E-value=4.9e-09 Score=90.23 Aligned_cols=138 Identities=21% Similarity=0.267 Sum_probs=76.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc-ccccccccccCc---------eeeeCCCCCCCcc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELTTLSSAN---------HVELSPSDAGFQD 106 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~i~~~~~~~~~~~ 106 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++.... ..... ....+..+.+.. .+.+.. ....
T Consensus 38 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~---~~~~ 111 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLA--LADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN---PGMS 111 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEETT--TSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTC---TTCC
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhh--hCCHHHHHhcEEEEeCCCccccccHHHHHhccC---CCCC
Confidence 89999999999999999998 66788888888776443 10000 000011111110 011100 0011
Q ss_pred hhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc
Q 018543 107 RYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY 157 (354)
Q Consensus 107 ~~~i~~~~~~~-----~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~ 157 (354)
...+.+.++.+ ....+ ..+|+ ..+++++++||+ ..|++.....+.+.+.+.
T Consensus 112 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 112 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11222332221 11111 12221 257899999998 789999999999988766
Q ss_pred cCceeEEEEecCCCcccHHHhhhcc
Q 018543 158 SASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 158 ~~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
..+..+|+++++.+.+ . ..+|+.
T Consensus 192 ~~g~tviivtH~~~~~-~-~~d~v~ 214 (247)
T 2ff7_A 192 CKGRTVIIIAHRLSTV-K-NADRII 214 (247)
T ss_dssp HTTSEEEEECSSGGGG-T-TSSEEE
T ss_pred cCCCEEEEEeCCHHHH-H-hCCEEE
Confidence 4556677777765533 2 245543
No 113
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.83 E-value=5.5e-09 Score=94.19 Aligned_cols=145 Identities=15% Similarity=0.214 Sum_probs=78.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC-ccccccccccccCc----------eeeeCCCCCCCc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELTTLSSAN----------HVELSPSDAGFQ 105 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~i~~~~~~~~~~ 105 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+...... ......+..+.+.. .+.+.....+..
T Consensus 33 ~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~ 111 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAG-FEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGR 111 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCC
T ss_pred EEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCC
Confidence 88999999999999999998 7788889999888765200000 00000111111110 011111100111
Q ss_pred c---hhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc--cCcee
Q 018543 106 D---RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY--SASCR 162 (354)
Q Consensus 106 ~---~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~--~~~~~ 162 (354)
. ...+.+.++.+.- ..+..+|+ ..+++++++||+ ..|++.....++..+.+. ..+..
T Consensus 112 ~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~t 191 (359)
T 3fvq_A 112 TAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKS 191 (359)
T ss_dssp SHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 1 1123444443321 11112221 257899999997 889998888887655332 23456
Q ss_pred EEEEecCCCcccHHHhhhcce
Q 018543 163 LILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 163 ~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+|++|++.+ ....+.+|+.+
T Consensus 192 vi~vTHd~~-ea~~~aDri~v 211 (359)
T 3fvq_A 192 AVFVSHDRE-EALQYADRIAV 211 (359)
T ss_dssp EEEECCCHH-HHHHHCSEEEE
T ss_pred EEEEeCCHH-HHHHHCCEEEE
Confidence 666666544 33456677643
No 114
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.83 E-value=3.3e-09 Score=96.29 Aligned_cols=142 Identities=14% Similarity=0.227 Sum_probs=80.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------eeeeCCCCCCCcc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------HVELSPSDAGFQD 106 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~ 106 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+....+ .+ ..+..+.+.. .+.+.....+...
T Consensus 40 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~-~~--r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 115 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPP-KD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 115 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCG-GG--GTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred EEEECCCCChHHHHHHHHHc-CCCCCceEEEECCEECCCCCh-hh--CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 88999999999999999998 778888888888876531011 01 0111111111 0111110011111
Q ss_pred ---hhHHHHHHHHHH-----hcCCCCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeE
Q 018543 107 ---RYVVQEVIKEMA-----KNRPIDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRL 163 (354)
Q Consensus 107 ---~~~i~~~~~~~~-----~~~~~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~ 163 (354)
...+.++++.+. ...+..+|+. .+++++++||+ ..|++.....++..+.+... +..+
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 195 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 195 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 112344444331 1122233322 57899999997 78999999988888866532 4567
Q ss_pred EEEecCCCcccHHHhhhcce
Q 018543 164 ILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 164 Il~~~~~~~l~~~l~sR~~~ 183 (354)
|++|++.+ ....+.+|+.+
T Consensus 196 i~vTHd~~-~a~~~adri~v 214 (372)
T 1v43_A 196 IYVTHDQV-EAMTMGDRIAV 214 (372)
T ss_dssp EEEESCHH-HHHHHCSEEEE
T ss_pred EEEeCCHH-HHHHhCCEEEE
Confidence 77766643 33455666543
No 115
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.82 E-value=2.3e-09 Score=91.77 Aligned_cols=144 Identities=10% Similarity=0.174 Sum_probs=77.9
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------eeeeCCCCCCC
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------HVELSPSDAGF 104 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~ 104 (354)
..+.|.||+|+||||+++++++ +..+..+.+.+++..... .+..+. .+..+.+.. .+.+.....+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~-~~~~~~--~i~~v~q~~~l~~~ltv~enl~~~~~~~~~ 100 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG-IVKPDRGEVRLNGADITP-LPPERR--GIGFVPQDYALFPHLSVYRNIAYGLRNVER 100 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTT-SCTTTS--CCBCCCSSCCCCTTSCHHHHHHTTCTTSCH
T ss_pred EEEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCc-CchhhC--cEEEEcCCCccCCCCcHHHHHHHHHHHcCC
Confidence 4488999999999999999998 667888888888765430 000000 111111110 01010000000
Q ss_pred c-chhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeE
Q 018543 105 Q-DRYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRL 163 (354)
Q Consensus 105 ~-~~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~ 163 (354)
. ....+.+.++.+.-. .+..+|+ ..+++++++||+ ..|++..+..+.+.+.+... +..+
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tv 180 (240)
T 2onk_A 101 VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180 (240)
T ss_dssp HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 0 011122333222110 0111221 257899999998 78999999999998876532 4556
Q ss_pred EEEecCCCcccHHHhhhcce
Q 018543 164 ILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 164 Il~~~~~~~l~~~l~sR~~~ 183 (354)
|++|++.+ ....+.+|+.+
T Consensus 181 i~vtHd~~-~~~~~~d~i~~ 199 (240)
T 2onk_A 181 LHVTHDLI-EAAMLADEVAV 199 (240)
T ss_dssp EEEESCHH-HHHHHCSEEEE
T ss_pred EEEeCCHH-HHHHhCCEEEE
Confidence 66666543 23445555543
No 116
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.82 E-value=5.5e-09 Score=87.71 Aligned_cols=125 Identities=11% Similarity=0.199 Sum_probs=73.6
Q ss_pred hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc----
Q 018543 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ---- 105 (354)
Q Consensus 30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 105 (354)
..|.. +.|.||+|+||||+++++++ +..+..+.+.+++..+. . .+ ..+.+.+++....
T Consensus 33 ~~Ge~--~~iiG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~--~--~~-----------~~i~~v~q~~~~~~~~t 94 (214)
T 1sgw_A 33 EKGNV--VNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYNGVPIT--K--VK-----------GKIFFLPEEIIVPRKIS 94 (214)
T ss_dssp ETTCC--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGG--G--GG-----------GGEEEECSSCCCCTTSB
T ss_pred cCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEhh--h--hc-----------CcEEEEeCCCcCCCCCC
Confidence 44554 88999999999999999998 66777888887775432 0 00 0111111111110
Q ss_pred ----------------chhHHHHHHHHHHhcC----CCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 106 ----------------DRYVVQEVIKEMAKNR----PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 106 ----------------~~~~i~~~~~~~~~~~----~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
....+.+.++.+.-.. +..+|+ ..+++++++||+ ..|++.....+.+
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~ 174 (214)
T 1sgw_A 95 VEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 174 (214)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHH
Confidence 1122334443332111 111121 257899999998 7889888888888
Q ss_pred HHhhcc-CceeEEEEecCCCc
Q 018543 153 TMEKYS-ASCRLILCCNSSSK 172 (354)
Q Consensus 153 ~le~~~-~~~~~Il~~~~~~~ 172 (354)
.+.+.. .+..+|++|++.+.
T Consensus 175 ~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 175 SILEILKEKGIVIISSREELS 195 (214)
T ss_dssp HHHHHHHHHSEEEEEESSCCT
T ss_pred HHHHHHhCCCEEEEEeCCHHH
Confidence 886653 24556677766543
No 117
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.81 E-value=2.5e-09 Score=91.71 Aligned_cols=144 Identities=10% Similarity=0.103 Sum_probs=78.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeCCCCCCCcc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSPSDAGFQD 106 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~ 106 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++.......+.......+..+.+. +.+.+.........
T Consensus 35 ~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 113 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE 113 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSS
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHH
Confidence 88999999999999999998 66788888888776542000000000001111111 11111100000011
Q ss_pred --hhHHHHHHHHHH-h-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEE
Q 018543 107 --RYVVQEVIKEMA-K-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLI 164 (354)
Q Consensus 107 --~~~i~~~~~~~~-~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~I 164 (354)
...+.++++.+. - ..+..+|+ ..+++++++||+ ..|++..+..+.+.+.+.. .+..+|
T Consensus 114 ~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi 193 (240)
T 1ji0_A 114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193 (240)
T ss_dssp HHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 112334433331 1 11112221 257899999998 7899999999999887653 345667
Q ss_pred EEecCCCcccHHHhhhcc
Q 018543 165 LCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 165 l~~~~~~~l~~~l~sR~~ 182 (354)
++|++.+ ....+.+|+.
T Consensus 194 ~vtHd~~-~~~~~~d~v~ 210 (240)
T 1ji0_A 194 LVEQNAL-GALKVAHYGY 210 (240)
T ss_dssp EEESCHH-HHHHHCSEEE
T ss_pred EEecCHH-HHHHhCCEEE
Confidence 7666643 2344555543
No 118
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.80 E-value=4.2e-09 Score=90.62 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=74.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccCc----------eeeeCCCCCCCc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSAN----------HVELSPSDAGFQ 105 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~i~~~~~~~~~~ 105 (354)
+.|.||+|+||||+++++++ +..+. +.+.+++.... ...... ...+..+.+.. .+.+.. ....
T Consensus 29 ~~liG~NGsGKSTLlk~l~G-l~~p~-G~i~~~g~~~~--~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~~- 102 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAG-MTSGK-GSIQFAGQPLE--AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-HDKT- 102 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCE-EEEEETTEEGG--GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC-SSTT-
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCC-eEEEECCEECC--cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh-ccCC-
Confidence 88999999999999999998 56677 88888776442 100000 00011111100 010100 0000
Q ss_pred chhHHHHHHHHHHhc-----CCCCCCCC------------CCce-------EEEEeCC-CcCCHHHHHHHHHHHhhcc-C
Q 018543 106 DRYVVQEVIKEMAKN-----RPIDTKGK------------RGFK-------VLVLNEV-DKLSREAQHSLRRTMEKYS-A 159 (354)
Q Consensus 106 ~~~~i~~~~~~~~~~-----~~~~~~~~------------~~~~-------viiiDE~-d~l~~~~~~~Ll~~le~~~-~ 159 (354)
....+.+.++.+.-. .+..+|+. .+++ ++++||+ ..|++..+..+.+.+.+.. .
T Consensus 103 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (249)
T 2qi9_C 103 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182 (249)
T ss_dssp CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 112233444332111 01112210 2456 9999998 7899999999999987653 3
Q ss_pred ceeEEEEecCCCcccHHHhhhcce
Q 018543 160 SCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 160 ~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+..+|+++++. .....+.+|+.+
T Consensus 183 g~tviivtHd~-~~~~~~~d~v~~ 205 (249)
T 2qi9_C 183 GLAIVMSSHDL-NHTLRHAHRAWL 205 (249)
T ss_dssp TCEEEEECSCH-HHHHHHCSEEEE
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 44555555543 334455566543
No 119
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.79 E-value=1.4e-09 Score=96.25 Aligned_cols=125 Identities=18% Similarity=0.358 Sum_probs=74.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ----------- 105 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------- 105 (354)
+.|.||+|+||||+++++++ ++.+..+.+.+++.... .... .. ....+.+.+++....
T Consensus 83 vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~G~~i~--~~~~------~~--~r~~i~~v~Q~~~lf~~Tv~eNi~~~ 151 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFR-FYDISSGCIRIDGQDIS--QVTQ------AS--LRSHIGVVPQDTVLFNDTIADNIRYG 151 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTT-SSCCSEEEEEETTEETT--SBCH------HH--HHHTEEEECSSCCCCSEEHHHHHHTT
T ss_pred EEEECCCCchHHHHHHHHHc-CCCCCCcEEEECCEEcc--cCCH------HH--HhcceEEEecCCccCcccHHHHHHhh
Confidence 89999999999999999998 77888888888886543 1000 00 001122222221111
Q ss_pred ----chhHHHHHHHHH-----HhcCC-----------CCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 106 ----DRYVVQEVIKEM-----AKNRP-----------IDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 106 ----~~~~i~~~~~~~-----~~~~~-----------~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
....+.+.++.. ....+ ..+++. .+++|+|+||+ ..|++.....+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~ 231 (306)
T 3nh6_A 152 RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231 (306)
T ss_dssp STTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 111122222211 11111 112211 36799999998 7899999988888
Q ss_pred HHhhccCceeEEEEecCCCc
Q 018543 153 TMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 153 ~le~~~~~~~~Il~~~~~~~ 172 (354)
.+.+...+..+|+++++.+.
T Consensus 232 ~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 232 SLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHHHTTSEEEEECCSHHH
T ss_pred HHHHHcCCCEEEEEEcChHH
Confidence 88776556677777776543
No 120
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.78 E-value=8.4e-09 Score=89.98 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCC
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 171 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 57899999998 78999999999999987643 566777776644
No 121
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.77 E-value=8.9e-09 Score=89.40 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=38.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++..+..+++.+.+.. .+..+|++|++. .....+.+|+.+
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~ 225 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIF 225 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEE
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 57899999998 7899999999998886653 245566666554 334455666543
No 122
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.77 E-value=3.6e-09 Score=95.29 Aligned_cols=132 Identities=14% Similarity=0.275 Sum_probs=79.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-------- 108 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------- 108 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+. .... ....+.+.+++.......
T Consensus 29 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~--~~~~----------~~r~ig~v~Q~~~l~~~ltv~enl~~ 95 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVT--DLSP----------EKHDIAFVYQNYSLFPHMNVKKNLEF 95 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHT-SSCCSEEEEEETTEECT--TSCH----------HHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHc-CCCCCCcEEEECCEECC--CCch----------hhCcEEEEecCcccCCCCCHHHHHHH
Confidence 88999999999999999998 67888888888876543 1000 001123333332222211
Q ss_pred -----------HHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-
Q 018543 109 -----------VVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS- 158 (354)
Q Consensus 109 -----------~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~- 158 (354)
.+.++++.+.-. .+..+|+ ..+++++++||+ ..|++.....++..+.+..
T Consensus 96 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~ 175 (348)
T 3d31_A 96 GMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175 (348)
T ss_dssp HHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 222333222110 1111221 257899999997 8899999998888886653
Q ss_pred -CceeEEEEecCCCcccHHHhhhcc
Q 018543 159 -ASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 159 -~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+..+|++|++.+ ....+.+|+.
T Consensus 176 ~~g~tii~vTHd~~-~~~~~adri~ 199 (348)
T 3d31_A 176 KNKLTVLHITHDQT-EARIMADRIA 199 (348)
T ss_dssp HTTCEEEEEESCHH-HHHHHCSEEE
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 2456777766643 2345556653
No 123
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.77 E-value=3e-09 Score=96.14 Aligned_cols=142 Identities=17% Similarity=0.272 Sum_probs=77.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc----CCCccccccccccccCc----------eeeeCCCCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID----AGSRNIDLELTTLSSAN----------HVELSPSDA 102 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----------~i~~~~~~~ 102 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+... .+..+. .+..+.+.. .+.+.....
T Consensus 34 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~~~~~~r--~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 110 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDR--KIGMVFQTWALYPNLTAFENIAFPLTNM 110 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHT-SSCCSEEEEEETTEEEEETTEESSCGGGS--CEEEEETTSCCCTTSCHHHHHHGGGTTS
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECcccccccCChhhC--CEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 88999999999999999998 7788888888888765310 000000 111111110 011100000
Q ss_pred CCcc---hhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--
Q 018543 103 GFQD---RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-- 159 (354)
Q Consensus 103 ~~~~---~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-- 159 (354)
+... ...+.++++.+.- ..+..+|+ ..+++++++||+ ..|++.....+++.+.+...
T Consensus 111 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 190 (353)
T 1oxx_K 111 KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190 (353)
T ss_dssp SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 1110 1123333333211 11112221 257899999997 78998888888888865432
Q ss_pred ceeEEEEecCCCcccHHHhhhcc
Q 018543 160 SCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 160 ~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
+..+|++|++.+. ...+.+|+.
T Consensus 191 g~tvi~vTHd~~~-~~~~adri~ 212 (353)
T 1oxx_K 191 GVTLLVVSHDPAD-IFAIADRVG 212 (353)
T ss_dssp CCEEEEEESCHHH-HHHHCSEEE
T ss_pred CCEEEEEeCCHHH-HHHhCCEEE
Confidence 4567777666433 345556654
No 124
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.73 E-value=8.1e-09 Score=89.06 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=37.7
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHH-hhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l-~sR~~ 182 (354)
.+++++++||+ ..|++..+..+.+.+.+... +..+|++|++.+ ....+ .+|+.
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~ 215 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVH 215 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEE
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEE
Confidence 36899999998 78999999999999977643 455666666543 33444 35553
No 125
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.72 E-value=2.3e-08 Score=86.99 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=79.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC-----------ceeeeCCCCC-C-
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA-----------NHVELSPSDA-G- 103 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~~~~~~~-~- 103 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++...... ..+. .+..+.+. +.+.+..... .
T Consensus 36 ~~liG~nGsGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~--~~~~--~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~ 110 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGY--EIRR--NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD 110 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCHH--HHGG--GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTT
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCCcEEEECCEECchH--Hhhh--hEEEEeccchhhcCCCcHHHHHHHHHHhcCCH
Confidence 88999999999999999998 6677888888877543200 0000 01111110 1111111100 0
Q ss_pred CcchhHHHHHHHHHHh-------cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-Ccee
Q 018543 104 FQDRYVVQEVIKEMAK-------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCR 162 (354)
Q Consensus 104 ~~~~~~i~~~~~~~~~-------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~ 162 (354)
......+.+.++.+.- ..+..+|+ ..+++++++||+ ..|++.....+.+.+.+.. .+..
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t 190 (266)
T 2yz2_A 111 RDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190 (266)
T ss_dssp SCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence 0111234444443321 11112221 257899999998 7899999999999987653 3455
Q ss_pred EEEEecCCCcccHHHhhhcce
Q 018543 163 LILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 163 ~Il~~~~~~~l~~~l~sR~~~ 183 (354)
+|++|++.+. ...+.+|+.+
T Consensus 191 ii~vtHd~~~-~~~~~d~v~~ 210 (266)
T 2yz2_A 191 VILISHDIET-VINHVDRVVV 210 (266)
T ss_dssp EEEECSCCTT-TGGGCSEEEE
T ss_pred EEEEeCCHHH-HHHhCCEEEE
Confidence 6666666543 3455566543
No 126
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.69 E-value=7.8e-08 Score=83.32 Aligned_cols=129 Identities=17% Similarity=0.274 Sum_probs=76.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee-eCCCCCCC-----------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGF----------- 104 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~----------- 104 (354)
+.|.||+|+||||+++++++ +. ++.+.+.+++...... .. + ..+. +.+++...
T Consensus 33 ~~i~G~NGsGKSTLlk~l~G-l~-p~~G~I~~~g~~~~~~-~~-~-----------~~i~~~v~Q~~~l~~tv~enl~~~ 97 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISG-LL-PYSGNIFINGMEVRKI-RN-Y-----------IRYSTNLPEAYEIGVTVNDIVYLY 97 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SS-CCEEEEEETTEEGGGC-SC-C-----------TTEEECCGGGSCTTSBHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC-CC-CCCcEEEECCEECcch-HH-h-----------hheEEEeCCCCccCCcHHHHHHHh
Confidence 88999999999999999998 55 8888888877544310 00 0 1122 22211111
Q ss_pred -----cchhHHHHHHHHHHhc------CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCc
Q 018543 105 -----QDRYVVQEVIKEMAKN------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS 160 (354)
Q Consensus 105 -----~~~~~i~~~~~~~~~~------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~ 160 (354)
.....+.+.++.+.-. .+..+|+ ..+++++++||+ ..|++.....+.+.+.+...
T Consensus 98 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~- 176 (263)
T 2pjz_A 98 EELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK- 176 (263)
T ss_dssp HHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-
T ss_pred hhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-
Confidence 0111233333332111 0111221 157899999998 78999999999999988754
Q ss_pred eeEEEEecCCCcccHHHhh-hcce
Q 018543 161 CRLILCCNSSSKVTEAIRS-RCLN 183 (354)
Q Consensus 161 ~~~Il~~~~~~~l~~~l~s-R~~~ 183 (354)
.+|++|++.+ ....+.+ |+.+
T Consensus 177 -tviivtHd~~-~~~~~~d~~i~~ 198 (263)
T 2pjz_A 177 -EGILVTHELD-MLNLYKEYKAYF 198 (263)
T ss_dssp -EEEEEESCGG-GGGGCTTSEEEE
T ss_pred -cEEEEEcCHH-HHHHhcCceEEE
Confidence 5666666653 3344555 5433
No 127
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.67 E-value=2.1e-08 Score=86.98 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=38.0
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+++++++||+ ..|++.....+.+.+.+...+..+|++|++.+.+ . ..+|+.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~-~-~~d~i~ 224 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI-S-SAESII 224 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS-T-TCSEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-H-hCCEEE
Confidence 46799999998 7899999999999887765556677777765533 2 245543
No 128
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.67 E-value=1.1e-08 Score=93.43 Aligned_cols=137 Identities=21% Similarity=0.343 Sum_probs=80.0
Q ss_pred hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC-----
Q 018543 30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF----- 104 (354)
Q Consensus 30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----- 104 (354)
..|.. +.|.||+|+||||+++++++ +.. ..+.+.+++..+. ..... .. ...+.+.++++..
T Consensus 45 ~~Ge~--~~llGpsGsGKSTLLr~iaG-l~~-~~G~I~i~G~~i~--~~~~~---~~-----rr~ig~v~Q~~~lf~~tv 110 (390)
T 3gd7_A 45 SPGQR--VGLLGRTGSGKSTLLSAFLR-LLN-TEGEIQIDGVSWD--SITLE---QW-----RKAFGVIPQKVFIFSGTF 110 (390)
T ss_dssp CTTCE--EEEEESTTSSHHHHHHHHHT-CSE-EEEEEEESSCBTT--SSCHH---HH-----HHTEEEESCCCCCCSEEH
T ss_pred cCCCE--EEEECCCCChHHHHHHHHhC-CCC-CCeEEEECCEECC--cCChH---HH-----hCCEEEEcCCcccCccCH
Confidence 34444 89999999999999999998 444 6678888776543 10000 00 0011222221111
Q ss_pred ---------cchhHHHHHHHH-----HHhcCCCC-----------CCC------------CCCceEEEEeCC-CcCCHHH
Q 018543 105 ---------QDRYVVQEVIKE-----MAKNRPID-----------TKG------------KRGFKVLVLNEV-DKLSREA 146 (354)
Q Consensus 105 ---------~~~~~i~~~~~~-----~~~~~~~~-----------~~~------------~~~~~viiiDE~-d~l~~~~ 146 (354)
.....+.+.++. +....+.. +|+ ..+++++++||+ ..|++..
T Consensus 111 ~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~ 190 (390)
T 3gd7_A 111 RKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190 (390)
T ss_dssp HHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHH
T ss_pred HHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 111223333332 12222222 332 147899999997 7899999
Q ss_pred HHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543 147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 147 ~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
...+++.+.+......+|+++++.+.+ ...+|+.
T Consensus 191 ~~~l~~~l~~~~~~~tvi~vtHd~e~~--~~aDri~ 224 (390)
T 3gd7_A 191 YQIIRRTLKQAFADCTVILCEARIEAM--LECDQFL 224 (390)
T ss_dssp HHHHHHHHHTTTTTSCEEEECSSSGGG--TTCSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCHHHH--HhCCEEE
Confidence 999999997765567788887775432 2356653
No 129
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.65 E-value=1.9e-08 Score=86.34 Aligned_cols=36 Identities=31% Similarity=0.650 Sum_probs=31.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 73 (354)
+.|.||+|+||||+++++++ +..+..+.+.+++...
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~ 66 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPI 66 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSBSCEEETTEES
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEh
Confidence 89999999999999999998 6778888888887654
No 130
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.64 E-value=3.8e-08 Score=95.40 Aligned_cols=145 Identities=14% Similarity=0.260 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccCc------
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSAN------ 93 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------ 93 (354)
+.+.+.-.++.|+. +.+.||+|+||||+++.+++ ++.++.+.+.+++.+.. ...... ...+..+.+..
T Consensus 358 ~l~~i~l~i~~G~~--~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~--~~~~~~~~~~i~~v~Q~~~l~~~t 432 (582)
T 3b5x_A 358 ALSHVSFSIPQGKT--VALVGRSGSGKSTIANLFTR-FYDVDSGSICLDGHDVR--DYKLTNLRRHFALVSQNVHLFNDT 432 (582)
T ss_pred ccccceEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCCEEEECCEEhh--hCCHHHHhcCeEEEcCCCcccccc
Confidence 33444444444544 89999999999999999998 67888888888886543 100000 00111111111
Q ss_pred ---eeeeCCCCCCCcchhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeCC-Cc
Q 018543 94 ---HVELSPSDAGFQDRYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNEV-DK 141 (354)
Q Consensus 94 ---~i~~~~~~~~~~~~~~i~~~~~~~-----~~~~~-----------~~~~~------------~~~~~viiiDE~-d~ 141 (354)
.+.+... .. .....+.+.++.+ ....| ..+|+ ..+++++++||+ ..
T Consensus 433 v~eni~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~ 510 (582)
T 3b5x_A 433 IANNIAYAAE-GE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510 (582)
T ss_pred HHHHHhccCC-CC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 0111000 00 1112233333221 11111 11221 157899999998 78
Q ss_pred CCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 142 LSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 142 l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
+++.....+.+.+.+...+..+|+++++.+.
T Consensus 511 LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b5x_A 511 LDTESERAIQAALDELQKNKTVLVIAHRLST 541 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 9999999999988776556677888877653
No 131
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.63 E-value=6.1e-08 Score=83.64 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=38.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++..+..+.+.+.+... +..+|+++++. .....+.+|+.++
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l 202 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLL 202 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 57899999998 78999999999998876532 45566666554 3334455555443
No 132
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.62 E-value=2.8e-08 Score=84.89 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=37.8
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHh---hccCceeEEEEecCCCcccHHHhhhcce
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTME---KYSASCRLILCCNSSSKVTEAIRSRCLN 183 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le---~~~~~~~~Il~~~~~~~l~~~l~sR~~~ 183 (354)
.+++++++||+ ..|++.....+.+.+. +...+..+|++|++.+.+ . ..+|+.+
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~-~~d~v~~ 200 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-P-QVDVIIV 200 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-G-GSSEEEE
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-H-hCCEEEE
Confidence 36799999998 7899999999999883 333456677777776543 3 3555533
No 133
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.58 E-value=1.8e-08 Score=97.55 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=75.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ----------- 105 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------- 105 (354)
+.+.||+|+||||+++.+++ ++.+..+.+.+++.+.. .... ......+.+.+++....
T Consensus 370 ~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~--~~~~--------~~~r~~i~~v~Q~~~l~~~tv~eni~~~ 438 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIK--DFLT--------GSLRNQIGLVQQDNILFSDTVKENILLG 438 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTT-SSCCSEEEEEETTEEGG--GSCH--------HHHHHTEEEECSSCCCCSSBHHHHHGGG
T ss_pred EEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEEhh--hCCH--------HHHhhheEEEeCCCccCcccHHHHHhcC
Confidence 89999999999999999998 67888888888886544 1000 00001122222221111
Q ss_pred ----chhHHHHHHHHH-----HhcCC-----------CCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 106 ----DRYVVQEVIKEM-----AKNRP-----------IDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 106 ----~~~~i~~~~~~~-----~~~~~-----------~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
....+.+..+.. ....| ..+|+. .+++++++||+ ..+++.....+.+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~ 518 (578)
T 4a82_A 439 RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518 (578)
T ss_dssp CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 111122222111 11111 012211 36899999998 7899998888888
Q ss_pred HHhhccCceeEEEEecCCCcc
Q 018543 153 TMEKYSASCRLILCCNSSSKV 173 (354)
Q Consensus 153 ~le~~~~~~~~Il~~~~~~~l 173 (354)
.+.+...+..+|+++++.+.+
T Consensus 519 ~l~~~~~~~t~i~itH~l~~~ 539 (578)
T 4a82_A 519 ALDVLSKDRTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHTTTSEEEEECSSGGGT
T ss_pred HHHHHcCCCEEEEEecCHHHH
Confidence 887765666778888877654
No 134
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.58 E-value=6.8e-08 Score=82.08 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=32.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHH-HhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~-le~~~~~~~~Il~~~~~~ 171 (354)
.+++++++||+ ..|++.....+.+. +.+...+..+|+++++.+
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 46799999998 78999999999986 454444556777766643
No 135
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.58 E-value=2.9e-08 Score=96.44 Aligned_cols=126 Identities=21% Similarity=0.308 Sum_probs=75.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc----------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD---------- 106 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------- 106 (354)
+.+.||+|+||||+++.+++ ++.++.+.+.+++.+.. .... ..-...+.+.+++.....
T Consensus 384 ~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~i~--~~~~--------~~~r~~i~~v~Q~~~lf~~tv~eni~~~ 452 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMR-FYDVDRGQILVDGIDIR--KIKR--------SSLRSSIGIVLQDTILFSTTVKENLKYG 452 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTT-SSCCSEEEEEETTEEGG--GSCH--------HHHHHHEEEECTTCCCCSSBHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHhc-CcCCCCeEEEECCEEhh--hCCH--------HHHHhceEEEeCCCccccccHHHHHhcC
Confidence 89999999999999999998 77888888888886554 1000 000011222222221111
Q ss_pred -----hhHHHHHHH-----HHHhcCC-----------CCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 107 -----RYVVQEVIK-----EMAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 107 -----~~~i~~~~~-----~~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
...+.+.++ .+....+ ..+++ ..+++++++||+ ..+++.....+.+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~ 532 (598)
T 3qf4_B 453 NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532 (598)
T ss_dssp STTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 011111111 0111111 11221 147899999998 7899999888888
Q ss_pred HHhhccCceeEEEEecCCCcc
Q 018543 153 TMEKYSASCRLILCCNSSSKV 173 (354)
Q Consensus 153 ~le~~~~~~~~Il~~~~~~~l 173 (354)
.+.+...+..+|+++++.+.+
T Consensus 533 ~l~~~~~~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 533 AMWKLMEGKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHHTTSEEEEESCCTTHH
T ss_pred HHHHHcCCCEEEEEecCHHHH
Confidence 887765667788888887643
No 136
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.58 E-value=5.2e-08 Score=84.79 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=37.5
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHH-hhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l-~sR~~ 182 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+ ....+ .+|+.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~ 236 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVH 236 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEE
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEE
Confidence 37899999998 78999999999999987643 455666665543 33333 45543
No 137
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.56 E-value=4.5e-08 Score=94.89 Aligned_cols=126 Identities=17% Similarity=0.311 Sum_probs=75.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC------------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------ 104 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------ 104 (354)
+.+.||+|+||||+++.+++ ++.++.+.+.+++.+.. ..... .+ ...+.+.+++...
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g-~~~p~~G~i~~~g~~~~--~~~~~---~~-----~~~i~~v~Q~~~l~~~tv~eni~~~ 440 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLR--EYTLA---SL-----RNQVALVSQNVHLFNDTVANNIAYA 440 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTT-TTCCSEEEEEETTEETT--TBCHH---HH-----HHTEEEECSSCCCCSSBHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhh-ccCCCCCeEEECCEEcc--ccCHH---HH-----HhhCeEEccCCcCCCCCHHHHHhcc
Confidence 89999999999999999998 67888888888876543 10000 00 0011122211111
Q ss_pred ----cchhHHHHHHHHH-----HhcCC-----------CCCCCC------------CCceEEEEeCC-CcCCHHHHHHHH
Q 018543 105 ----QDRYVVQEVIKEM-----AKNRP-----------IDTKGK------------RGFKVLVLNEV-DKLSREAQHSLR 151 (354)
Q Consensus 105 ----~~~~~i~~~~~~~-----~~~~~-----------~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll 151 (354)
.....+.+.++.+ ....| ..+|+. .+++++++||+ ..|++.....+.
T Consensus 441 ~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~ 520 (582)
T 3b60_A 441 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520 (582)
T ss_dssp TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHH
Confidence 1111222222211 11111 112211 46899999998 789999999898
Q ss_pred HHHhhccCceeEEEEecCCCcc
Q 018543 152 RTMEKYSASCRLILCCNSSSKV 173 (354)
Q Consensus 152 ~~le~~~~~~~~Il~~~~~~~l 173 (354)
+.+.+...+..+|+++++.+.+
T Consensus 521 ~~l~~~~~~~tvi~itH~~~~~ 542 (582)
T 3b60_A 521 AALDELQKNRTSLVIAHRLSTI 542 (582)
T ss_dssp HHHHHHHTTSEEEEECSCGGGT
T ss_pred HHHHHHhCCCEEEEEeccHHHH
Confidence 8887765566778888776543
No 138
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.55 E-value=2.5e-08 Score=96.69 Aligned_cols=125 Identities=18% Similarity=0.299 Sum_probs=75.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ----------- 105 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------- 105 (354)
+.+.||+|+||||+++.+++ ++.+..+.+.+++.+.. ... ...-...+.+.+++....
T Consensus 372 ~~ivG~sGsGKSTll~~l~g-~~~~~~G~i~i~g~~i~--~~~--------~~~~r~~i~~v~Q~~~lf~~tv~eni~~~ 440 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIPR-LIDPERGRVEVDELDVR--TVK--------LKDLRGHISAVPQETVLFSGTIKENLKWG 440 (587)
T ss_dssp EEEECSSSSSHHHHHHTTTT-SSCCSEEEEEESSSBGG--GBC--------HHHHHHHEEEECSSCCCCSEEHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHhC-CccCCCcEEEECCEEcc--cCC--------HHHHHhheEEECCCCcCcCccHHHHHhcc
Confidence 89999999999999999998 67888888888887554 100 000001122222221111
Q ss_pred ----chhHHHHHHHH------HHhcC----------CCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 106 ----DRYVVQEVIKE------MAKNR----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 106 ----~~~~i~~~~~~------~~~~~----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
....+.+..+. +...+ +..+++ ..+++++++||+ ..+++.....+.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~ 520 (587)
T 3qf4_A 441 REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520 (587)
T ss_dssp CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 11112222211 11100 011221 147899999998 7899999999999
Q ss_pred HHhhccCceeEEEEecCCCc
Q 018543 153 TMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 153 ~le~~~~~~~~Il~~~~~~~ 172 (354)
.+.+...+..+|++|++.+.
T Consensus 521 ~l~~~~~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 521 GLKRYTKGCTTFIITQKIPT 540 (587)
T ss_dssp HHHHHSTTCEEEEEESCHHH
T ss_pred HHHHhCCCCEEEEEecChHH
Confidence 88776667778888887654
No 139
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.53 E-value=4.3e-06 Score=92.50 Aligned_cols=166 Identities=17% Similarity=0.293 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (354)
....+..++..+.. .++.||+|||||++++.+|+.+ +.. .+.++++
T Consensus 634 ~~~tl~~Al~~~~~--~~l~GpaGtGKTe~vk~LA~~l-g~~-------------------------------~v~~nc~ 679 (2695)
T 4akg_A 634 GFATLTDSLHQKYG--GCFFGPAGTGKTETVKAFGQNL-GRV-------------------------------VVVFNCD 679 (2695)
T ss_dssp HHHHHHHHHHTTCE--EEEECCTTSCHHHHHHHHHHTT-TCC-------------------------------CEEEETT
T ss_pred HHHHHHHHHHhCCC--CcccCCCCCCcHHHHHHHHHHh-CCc-------------------------------EEEEECC
Confidence 34455555555543 7899999999999999999965 211 1222222
Q ss_pred CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHH-------HHHHhhc-------------cCc
Q 018543 101 DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSL-------RRTMEKY-------------SAS 160 (354)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~L-------l~~le~~-------------~~~ 160 (354)
+. . +...+..++..+.... ..+++||+++++++...++ ...+.+. .++
T Consensus 680 e~-l-d~~~lg~~~~g~~~~G----------aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~ 747 (2695)
T 4akg_A 680 DS-F-DYQVLSRLLVGITQIG----------AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPH 747 (2695)
T ss_dssp SS-C-CHHHHHHHHHHHHHHT----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTT
T ss_pred CC-C-ChhHhhHHHHHHHhcC----------CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCC
Confidence 21 1 1122344444444432 5799999999999887776 3333221 133
Q ss_pred eeEEEEec----CCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------Hc------CC
Q 018543 161 CRLILCCN----SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE-------KS------NR 223 (354)
Q Consensus 161 ~~~Il~~~----~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~-------~s------~g 223 (354)
+.++++.| ....+++.+++||..+.+..|+.+.+.+++-. ..|+...+.....++. .. +-
T Consensus 748 ~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydf 824 (2695)
T 4akg_A 748 TAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHF 824 (2695)
T ss_dssp CEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCC
T ss_pred ceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccc
Confidence 44555555 23479999999999999999999988888653 3465444444443333 11 23
Q ss_pred CHHHHHHHHHHH
Q 018543 224 SLRRAILSFETC 235 (354)
Q Consensus 224 d~R~ai~~L~~~ 235 (354)
.+|.....|..+
T Consensus 825 glRalksvL~~a 836 (2695)
T 4akg_A 825 GLRTLKGVLRNC 836 (2695)
T ss_dssp SHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 577776666544
No 140
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.48 E-value=4.2e-08 Score=85.83 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=30.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 73 (354)
+.|.||+|+||||+++++++ +..++.+.+.+++..+
T Consensus 50 ~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNA-YEPATSGTVNLFGKMP 85 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTBCC
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCCeEEEECCEEc
Confidence 88999999999999999998 6677888888877543
No 141
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.44 E-value=1e-07 Score=92.63 Aligned_cols=132 Identities=20% Similarity=0.345 Sum_probs=75.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccCc---------eeeeCCCCCCCcc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSAN---------HVELSPSDAGFQD 106 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~i~~~~~~~~~~~ 106 (354)
+.+.||+|+||||+++.+++ ++.+..+.+.+++.+.. ...... ...+..+.+.. ++.+.........
T Consensus 373 ~~ivG~sGsGKSTLl~~l~g-~~~p~~G~i~~~g~~i~--~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 449 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLSLLLR-LYDPASGTISLDGHDIR--QLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVT 449 (595)
T ss_dssp EEEECCTTSSSTHHHHHHTT-SSCCSEEEEEETTEETT--TBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSC
T ss_pred EEEECCCCCCHHHHHHHHhc-CcCCCCcEEEECCEEhh--hCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccC
Confidence 89999999999999999998 67888888888876543 100000 00111111110 1111000000011
Q ss_pred hhHHHHHHHHHH-----hcCC-----------CCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHHHHhhc
Q 018543 107 RYVVQEVIKEMA-----KNRP-----------IDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRRTMEKY 157 (354)
Q Consensus 107 ~~~i~~~~~~~~-----~~~~-----------~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~~le~~ 157 (354)
...+.+.++.+. ...| ..+|+. .+++++++||+ ..|++.....+.+.+.+.
T Consensus 450 ~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 529 (595)
T 2yl4_A 450 AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 529 (595)
T ss_dssp HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHH
Confidence 122333333221 1111 112211 46899999998 789999999999988776
Q ss_pred cCceeEEEEecCCC
Q 018543 158 SASCRLILCCNSSS 171 (354)
Q Consensus 158 ~~~~~~Il~~~~~~ 171 (354)
..+..+|+++++.+
T Consensus 530 ~~~~tvi~itH~~~ 543 (595)
T 2yl4_A 530 MDGRTVLVIAHRLS 543 (595)
T ss_dssp HTTSEEEEECCCHH
T ss_pred hcCCEEEEEecCHH
Confidence 55566777777754
No 142
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.43 E-value=3.6e-07 Score=80.31 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=32.3
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHH-hhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTM-EKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~l-e~~~~~~~~Il~~~~~~ 171 (354)
.+++++++||+ ..|++..+..+.+.+ .+...+..+|+++++.+
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~ 220 (290)
T 2bbs_A 176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220 (290)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 46799999998 789999999999864 44444556777776653
No 143
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.40 E-value=3.1e-07 Score=75.26 Aligned_cols=50 Identities=8% Similarity=0.089 Sum_probs=36.0
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC------cccHHHhhhcc
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAIRSRCL 182 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~------~l~~~l~sR~~ 182 (354)
++.+|+|||++.++++..+.|....+. +..+|++..+.+ ...+.+.+++.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad 131 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLAD 131 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhh
Confidence 568999999999988777777666664 466777666443 45566777764
No 144
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.39 E-value=1.9e-06 Score=95.85 Aligned_cols=75 Identities=13% Similarity=0.247 Sum_probs=56.9
Q ss_pred CCceEEEEeCCCcCCH------HHHHHHHHHHhhc------------cCceeEEEEecCC-----CcccHHHhhhcceee
Q 018543 129 RGFKVLVLNEVDKLSR------EAQHSLRRTMEKY------------SASCRLILCCNSS-----SKVTEAIRSRCLNIR 185 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~------~~~~~Ll~~le~~------------~~~~~~Il~~~~~-----~~l~~~l~sR~~~i~ 185 (354)
+++-|++|||++.-.. ...+.|+..|+.. ..++.+|.++|.+ ..+.+.+.+|+.++.
T Consensus 1373 Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence 5567999999985543 2556677777641 1345677777766 358999999999999
Q ss_pred ecCCCHHHHHHHHHHHHH
Q 018543 186 INSPTEEQIVKVLEFIAK 203 (354)
Q Consensus 186 ~~~~~~~~~~~~L~~~~~ 203 (354)
++.|+.+++..|...+..
T Consensus 1453 i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999999877654
No 145
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.36 E-value=5.5e-07 Score=86.01 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=39.6
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcceee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
.+++++++||+ ..|+...+..+.+.+.+.. .+..+|+++++. .....+.+|+.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFK 460 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEE
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEe
Confidence 46799999998 7899999998888887653 245556665554 44456667765544
No 146
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.35 E-value=3.8e-06 Score=68.91 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=42.9
Q ss_pred CCCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEE--EEe-cCC-CcccHHHhhh--cceeeecCCCHHHHHHHH
Q 018543 128 KRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLI--LCC-NSS-SKVTEAIRSR--CLNIRINSPTEEQIVKVL 198 (354)
Q Consensus 128 ~~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~I--l~~-~~~-~~l~~~l~sR--~~~i~~~~~~~~~~~~~L 198 (354)
..+++++|+||++.+ +....+.+.++++.+. +.++ ++. ++. ..+.+.++.+ +.++.+.+-+.+.+...+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~--~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG--TIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS--CCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC--cEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence 356789999997655 5567778888887542 2332 222 222 2566777664 567888776655555444
No 147
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.35 E-value=6.1e-07 Score=74.25 Aligned_cols=60 Identities=8% Similarity=0.130 Sum_probs=41.9
Q ss_pred CceEEEEeCCCcC--CH-HH--HHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcc-eeeecCC
Q 018543 130 GFKVLVLNEVDKL--SR-EA--QHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCL-NIRINSP 189 (354)
Q Consensus 130 ~~~viiiDE~d~l--~~-~~--~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~ 189 (354)
+..||||||++.+ +. +. ...++..++... ....+|++++.+..+..++++|+. .+++.++
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 4579999999988 22 11 113555555433 345789999998899999999985 5777663
No 148
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.35 E-value=1.2e-05 Score=78.01 Aligned_cols=194 Identities=13% Similarity=0.137 Sum_probs=98.8
Q ss_pred CCCCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHh---cCC-CCcccccccccccccCCCcc
Q 018543 8 RPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQV---FGP-GAEKVKVENKTWKIDAGSRN 81 (354)
Q Consensus 8 rP~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l---~~~-~~~~~~~~~~~~~~~~~~~~ 81 (354)
-|.....++|.+.....|..++.. +..+.+.++||+|+||||+|..+++.. ... ..+...++.... ..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~------~~ 192 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ------DK 192 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC------CH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC------ch
Confidence 366678899999999999999874 233349999999999999999886421 000 000011110000 00
Q ss_pred cccccccccc-Cceeee--CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc
Q 018543 82 IDLELTTLSS-ANHVEL--SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (354)
Q Consensus 82 ~~~~~~~~~~-~~~i~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~ 158 (354)
. .-...+.. ...+.. ............+.+.+...... ..++-+||||+++.. . .++..+
T Consensus 193 ~-~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~LLVLDdv~~~--~-------~l~~l~ 255 (591)
T 1z6t_A 193 S-GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR-------KHPRSLLILDDVWDS--W-------VLKAFD 255 (591)
T ss_dssp H-HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH-------TCTTCEEEEEEECCH--H-------HHHTTC
T ss_pred H-HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc-------CCCCeEEEEeCCCCH--H-------HHHHhc
Confidence 0 00000000 000000 00000111111122222221111 113469999999742 1 223335
Q ss_pred CceeEEEEecCCCcccHHHhhhcceeee---cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 018543 159 ASCRLILCCNSSSKVTEAIRSRCLNIRI---NSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228 (354)
Q Consensus 159 ~~~~~Il~~~~~~~l~~~l~sR~~~i~~---~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~a 228 (354)
.++.+|++|.+..- ..... ...+.+ .+++.++..+.+...+... ..-.++....|++.++|.+--.
T Consensus 256 ~~~~ilvTsR~~~~-~~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal 324 (591)
T 1z6t_A 256 SQCQILLTTRDKSV-TDSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVV 324 (591)
T ss_dssp SSCEEEEEESCGGG-GTTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHH
T ss_pred CCCeEEEECCCcHH-HHhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHH
Confidence 66778887766431 11111 223333 5899999999998776321 1111457888999999986443
No 149
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.33 E-value=2.7e-06 Score=76.26 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
+.+.+...+..|.. +++.||+|+||||+++++++ +..+..+.+.+++.
T Consensus 160 ~l~~l~~~i~~g~~--v~i~G~~GsGKTTll~~l~g-~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 160 AISAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIME-FIPKEERIISIEDT 207 (330)
T ss_dssp HHHHHHHHHHHTCC--EEEEESTTSCHHHHHHHGGG-GSCTTSCEEEEESS
T ss_pred HHhhhhhhccCCCE--EEEECCCCCCHHHHHHHHhC-CCcCCCcEEEECCe
Confidence 56667777777775 99999999999999999998 55666666666653
No 150
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.31 E-value=9.3e-07 Score=84.56 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=38.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+...+..+.+.+.+.. .+..+|+++++. .....+.+|+.++
T Consensus 418 ~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl 475 (538)
T 1yqt_A 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVF 475 (538)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEE
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 47899999998 7899999999999887653 245566665553 4445566665544
No 151
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.31 E-value=2.3e-07 Score=97.75 Aligned_cols=127 Identities=19% Similarity=0.328 Sum_probs=80.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ----------- 105 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------- 105 (354)
+-|+||+|+||||+++.+.+ ++.+..|.+.+|+.+.. ++....-...+.+.++++-..
T Consensus 1108 vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~iDG~di~----------~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~g 1176 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLER-FYDTLGGEIFIDGSEIK----------TLNPEHTRSQIAIVSQEPTLFDCSIAENIIYG 1176 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTT-SSCCSSSEEEETTEETT----------TBCHHHHHTTEEEECSSCCCCSEEHHHHHSSS
T ss_pred EEEECCCCChHHHHHHHHhc-CccCCCCEEEECCEEhh----------hCCHHHHHhheEEECCCCEeeCccHHHHHhcc
Confidence 89999999999999999998 78899999999987654 111111111233333332111
Q ss_pred ------chhHHHHHHHHH-----HhcCCC-----------CCCCC------------CCceEEEEeCC-CcCCHHHHHHH
Q 018543 106 ------DRYVVQEVIKEM-----AKNRPI-----------DTKGK------------RGFKVLVLNEV-DKLSREAQHSL 150 (354)
Q Consensus 106 ------~~~~i~~~~~~~-----~~~~~~-----------~~~~~------------~~~~viiiDE~-d~l~~~~~~~L 150 (354)
....+.+.++.. -...|- ++|+. .+++|+++||+ -.++.+....+
T Consensus 1177 ld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I 1256 (1321)
T 4f4c_A 1177 LDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256 (1321)
T ss_dssp SCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHH
Confidence 111233333221 111111 11110 46899999998 67888888888
Q ss_pred HHHHhhccCceeEEEEecCCCccc
Q 018543 151 RRTMEKYSASCRLILCCNSSSKVT 174 (354)
Q Consensus 151 l~~le~~~~~~~~Il~~~~~~~l~ 174 (354)
.+.+++...++.+|++++..+.+.
T Consensus 1257 q~~l~~~~~~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A 1257 QEALDRAREGRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp HHHHTTTSSSSEEEEECSSSSTTT
T ss_pred HHHHHHHcCCCEEEEeccCHHHHH
Confidence 899988777788999999887654
No 152
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.29 E-value=3.8e-06 Score=70.60 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=56.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~ 116 (354)
++++||+|+||||++..++..+...+.....+...... + . . ..+ ..++.+........ ...++...
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~------r-~-~-~~i--~srlG~~~~~~~~~---~~~~i~~~ 80 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT------R-S-I-RNI--QSRTGTSLPSVEVE---SAPEILNY 80 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG------G-G-C-SSC--CCCCCCSSCCEEES---STHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc------h-H-H-HHH--HHhcCCCccccccC---CHHHHHHH
Confidence 89999999999999988887765433222111110000 0 0 0 000 01111111110111 12334443
Q ss_pred HHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC
Q 018543 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (354)
Q Consensus 117 ~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 169 (354)
+..... ..++.+|+|||++.++.+....+.. +.+. +..+|++..+
T Consensus 81 i~~~~~-----~~~~dvViIDEaQ~l~~~~ve~l~~-L~~~--gi~Vil~Gl~ 125 (223)
T 2b8t_A 81 IMSNSF-----NDETKVIGIDEVQFFDDRICEVANI-LAEN--GFVVIISGLD 125 (223)
T ss_dssp HHSTTS-----CTTCCEEEECSGGGSCTHHHHHHHH-HHHT--TCEEEEECCS
T ss_pred HHHHhh-----CCCCCEEEEecCccCcHHHHHHHHH-HHhC--CCeEEEEecc
Confidence 333211 2456899999999998776555544 3332 5777777763
No 153
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.29 E-value=9.7e-07 Score=85.46 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=39.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcceee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIR 185 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i~ 185 (354)
.+++++++||+ ..|+...+..+.+.+.+.. .+..+|+++++. .....+.+|..++.
T Consensus 488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFE 546 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEE
T ss_pred hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc
Confidence 57899999998 7899999999999887653 345566665553 44455666655443
No 154
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.27 E-value=3.1e-06 Score=73.25 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=34.9
Q ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCC-Cccccccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-AEKVKVEN 70 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~ 70 (354)
+.+++++--. .+.+.+. +..|. .+++.||+|+||||+++++++.+ .+. .+.+.+++
T Consensus 5 ~~~l~~l~~~-~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g 61 (261)
T 2eyu_A 5 IPEFKKLGLP-DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIE 61 (261)
T ss_dssp -CCGGGSSCC-THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEE
T ss_pred CCChHHCCCH-HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcC
Confidence 4456665433 3444443 33333 39999999999999999999865 332 45554444
No 155
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.26 E-value=8.2e-06 Score=78.52 Aligned_cols=186 Identities=15% Similarity=0.158 Sum_probs=92.7
Q ss_pred ccCHHHHHHHHHHHhcC---CCCeEEEeCCCCCcHHHHHHHHHHH---hcCCCCcccccccccccccCCCcccccccccc
Q 018543 16 IVHQDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQ---VFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (354)
Q Consensus 16 ~g~~~~~~~l~~~l~~~---~~~~~ll~Gp~G~GKTtla~~la~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (354)
+|.+..++.|..++..+ ....+.++|+.|+||||+|+.+++. -... .+++..|. +-+.........+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~-----~F~~~~wv--~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI-----NYDSIVWL--KDSGTAPKSTFDL 203 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT-----TBSEEEEE--ECCCCSTTHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc-----cCCcEEEE--EECCCCCCCHHHH
Confidence 49999999998888654 2334899999999999999999862 1111 12222221 0000000000000
Q ss_pred cc--CceeeeC-----CCCCCCcchhHHHHHHHHHHhcCCCCCCCCCC-ceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543 90 SS--ANHVELS-----PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (354)
Q Consensus 90 ~~--~~~i~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~ 161 (354)
.. ...+... ..+....+...+...+.... .++ +-+||+|+++... .. .+. .. .++
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L---------~~~kr~LlVLDdv~~~~--~~-~~~----~~-~gs 266 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL---------IDRPNTLFVFDDVVQEE--TI-RWA----QE-LRL 266 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH---------TTSTTEEEEEEEECCHH--HH-HHH----HH-TTC
T ss_pred HHHHHHHHhcCcccccccccccccHHHHHHHHHHHH---------cCCCcEEEEEECCCCch--hh-ccc----cc-CCC
Confidence 00 0000000 00000000001111111111 122 5799999998632 11 111 11 457
Q ss_pred eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Q 018543 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLR 226 (354)
Q Consensus 162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~-~i~~~~l~~i~~~s~gd~R 226 (354)
++|+||.+.. +..........+.+++++.++-...+.+.+..... .-.++....|++.++|.+-
T Consensus 267 ~ilvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPL 331 (549)
T 2a5y_B 267 RCLVTTRDVE-ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPA 331 (549)
T ss_dssp EEEEEESBGG-GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHH
T ss_pred EEEEEcCCHH-HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChH
Confidence 7777776532 22211112246899999999999998876421111 1113467888889888763
No 156
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.26 E-value=2.2e-06 Score=71.52 Aligned_cols=49 Identities=33% Similarity=0.457 Sum_probs=34.8
Q ss_pred ccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccc
Q 018543 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKV 66 (354)
Q Consensus 6 kyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 66 (354)
..+|+++. +..+.+. +..|.. +.|.||+|+||||++++++.. .++.+.+
T Consensus 4 ~i~pk~~g----~~~~l~~----i~~Ge~--~~liG~nGsGKSTLl~~l~Gl--~p~~G~I 52 (208)
T 3b85_A 4 VIRPKTLG----QKHYVDA----IDTNTI--VFGLGPAGSGKTYLAMAKAVQ--ALQSKQV 52 (208)
T ss_dssp CCCCCSHH----HHHHHHH----HHHCSE--EEEECCTTSSTTHHHHHHHHH--HHHTTSC
T ss_pred ccccCCHh----HHHHHHh----ccCCCE--EEEECCCCCCHHHHHHHHhcC--CCcCCee
Confidence 46777763 3333333 355655 889999999999999999984 5555555
No 157
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.25 E-value=1.7e-06 Score=82.83 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=39.7
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++..+..+++.+++.. .+..+|+++++.+ ....+.+|+.++
T Consensus 175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl 231 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV 231 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 47899999998 7899999998888887653 2455666666543 555666776544
No 158
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.23 E-value=4.4e-07 Score=95.42 Aligned_cols=126 Identities=18% Similarity=0.300 Sum_probs=74.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc----------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD---------- 106 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------- 106 (354)
+.+.||+|+||||+++.+++ ++.+..+.+.+++.+.. . .....-...+.+.+++.....
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g-~~~~~~G~i~i~g~~i~--~--------~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g 487 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQR-LYDPLDGMVSIDGQDIR--T--------INVRYLREIIGVVSQEPVLFATTIAENIRYG 487 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTT-SSCCSEEEEEETTEEGG--G--------SCHHHHHHHEEEECSSCCCCSSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEHH--h--------CCHHHHHhheEEEcCCCccCCccHHHHHhcC
Confidence 89999999999999999998 67788888888886544 1 000000111333333321111
Q ss_pred -----hhHHHHHHHH------HHhcCC----------CCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 107 -----RYVVQEVIKE------MAKNRP----------IDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 107 -----~~~i~~~~~~------~~~~~~----------~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
...+.+..+. +...+. ..+++. .+++|+++||+ ..|+++....+.+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~ 567 (1284)
T 3g5u_A 488 REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567 (1284)
T ss_dssp CSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 0111111111 111110 012211 36899999998 7889888888888
Q ss_pred HHhhccCceeEEEEecCCCcc
Q 018543 153 TMEKYSASCRLILCCNSSSKV 173 (354)
Q Consensus 153 ~le~~~~~~~~Il~~~~~~~l 173 (354)
.+.+...+..+|+++++.+.+
T Consensus 568 ~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 568 ALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHHHHTTSEEEEECSCHHHH
T ss_pred HHHHHcCCCEEEEEecCHHHH
Confidence 886655667788888876543
No 159
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.2e-06 Score=82.86 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=39.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++.....+.+.+.+... +..+|++++ .......+.+|+.++
T Consensus 238 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH-dl~~~~~~~drv~vl 294 (608)
T 3j16_B 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH-DLSVLDYLSDFVCII 294 (608)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS-CHHHHHHHCSEEEEE
T ss_pred hCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEE
Confidence 47799999998 78999999999999877644 344555544 444445666776554
No 160
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.22 E-value=5.7e-07 Score=72.74 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=29.1
Q ss_pred CCceEEEEeCC-CcCCHH----------------HHHHHHHHHhhc-cCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEV-DKLSRE----------------AQHSLRRTMEKY-SASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~----------------~~~~Ll~~le~~-~~~~~~Il~~~~~~ 171 (354)
.+++++++||+ ..+++. ....+.+.+.+. ..+..+|+++++.+
T Consensus 100 ~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 100 CFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 46799999998 567766 446667766443 23466777777754
No 161
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.21 E-value=1.5e-06 Score=91.54 Aligned_cols=133 Identities=20% Similarity=0.286 Sum_probs=80.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCC-------------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG------------- 103 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------- 103 (354)
+.|.||+|+||||+++.+++ ++.+..+.+.+++.+.. ... .... ...+.+.+++..
T Consensus 1062 v~ivG~sGsGKSTl~~~l~g-~~~p~~G~I~i~g~~i~--~~~------~~~~--r~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1062 LALVGSSGCGKSTVVQLLER-FYDPMAGSVFLDGKEIK--QLN------VQWL--RAQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp EEEECSSSTTHHHHHHHHTT-SSCCSEEEEESSSSCTT--SSC------HHHH--TTSCEEEESSCCCCSSBHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEEcc--cCC------HHHH--HhceEEECCCCccccccHHHHHhcc
Confidence 89999999999999999998 77888888888887554 110 0000 011222221110
Q ss_pred ----CcchhHHHHHHHHH-----HhcCCC-----------CCCCC------------CCceEEEEeCC-CcCCHHHHHHH
Q 018543 104 ----FQDRYVVQEVIKEM-----AKNRPI-----------DTKGK------------RGFKVLVLNEV-DKLSREAQHSL 150 (354)
Q Consensus 104 ----~~~~~~i~~~~~~~-----~~~~~~-----------~~~~~------------~~~~viiiDE~-d~l~~~~~~~L 150 (354)
......+.+..+.. ....+. .+|+. .+++++++||+ ..++......+
T Consensus 1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 01111222222221 111111 12211 36899999998 78999999999
Q ss_pred HHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543 151 RRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 151 l~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+.+++...+..+|+++++.+.+.. .+|+.
T Consensus 1211 ~~~l~~~~~~~tvi~isH~l~~i~~--~dri~ 1240 (1284)
T 3g5u_A 1211 QEALDKAREGRTCIVIAHRLSTIQN--ADLIV 1240 (1284)
T ss_dssp HHHHHHHSSSSCEEEECSCTTGGGS--CSEEE
T ss_pred HHHHHHhCCCCEEEEEecCHHHHHc--CCEEE
Confidence 9998776666778888888876522 45543
No 162
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.18 E-value=6e-07 Score=94.68 Aligned_cols=126 Identities=19% Similarity=0.295 Sum_probs=74.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ----------- 105 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------- 105 (354)
+.+.||+|+||||+++.+.+ ++.+..+.+.+++.+.. ++....-...+.+.+++.-..
T Consensus 447 vaivG~sGsGKSTll~ll~~-~~~~~~G~I~idG~~i~----------~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g 515 (1321)
T 4f4c_A 447 VALVGSSGCGKSTIISLLLR-YYDVLKGKITIDGVDVR----------DINLEFLRKNVAVVSQEPALFNCTIEENISLG 515 (1321)
T ss_dssp EEEEECSSSCHHHHHHHHTT-SSCCSEEEEEETTEETT----------TSCHHHHHHHEEEECSSCCCCSEEHHHHHHTT
T ss_pred EEEEecCCCcHHHHHHHhcc-ccccccCcccCCCccch----------hccHHHHhhcccccCCcceeeCCchhHHHhhh
Confidence 89999999999999999998 67888888888886543 111000011122222222111
Q ss_pred ----chhHHHHHHHH------HHhcCC----------CCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543 106 ----DRYVVQEVIKE------MAKNRP----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (354)
Q Consensus 106 ----~~~~i~~~~~~------~~~~~~----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~ 152 (354)
....+.+.++. +...+. ..+++ -.+++|+++||+ ..++......+.+
T Consensus 516 ~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~ 595 (1321)
T 4f4c_A 516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595 (1321)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHH
Confidence 11122222222 111110 01121 147899999998 6777666666666
Q ss_pred HHhhccCceeEEEEecCCCcc
Q 018543 153 TMEKYSASCRLILCCNSSSKV 173 (354)
Q Consensus 153 ~le~~~~~~~~Il~~~~~~~l 173 (354)
.+.+...+..+|++|++.+.+
T Consensus 596 ~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 596 ALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp HHHHHHTTSEEEEECSCTTTT
T ss_pred HHHHHhCCCEEEEEcccHHHH
Confidence 666655667788889887744
No 163
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.12 E-value=1.1e-05 Score=72.80 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=31.3
Q ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.+++++...+ ....+ ....+. .+++.||+|+||||+++++++.+.
T Consensus 103 ~~~l~~lg~~~-~l~~l--~~~~~g--~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 103 VLTMEELGMGE-VFKRV--SDVPRG--LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CCCTTTTTCCH-HHHHH--HHCSSE--EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHcCChH-HHHHH--HhCCCC--EEEEECCCCCCHHHHHHHHHhccc
Confidence 44677765443 33322 122222 499999999999999999998763
No 164
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.11 E-value=4.8e-05 Score=80.09 Aligned_cols=195 Identities=14% Similarity=0.192 Sum_probs=99.5
Q ss_pred CCCCCCcccCHHHHHHHHHHHhcC--CCCeEEEeCCCCCcHHHHHHHHHHHh--cCCCCcccccccccccccC-CCcccc
Q 018543 9 PKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQV--FGPGAEKVKVENKTWKIDA-GSRNID 83 (354)
Q Consensus 9 P~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKTtla~~la~~l--~~~~~~~~~~~~~~~~~~~-~~~~~~ 83 (354)
|.....++|.+..++.|...+... ....+.|+|+.|+||||+|+.+++.. .... +.+..+.+.- ......
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGC-----FSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTT-----STTCEEEEECCSCCHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhh-----CCCeEEEEEECCcCchH
Confidence 556678999999999999988542 33338899999999999998876532 0100 0000000000 000000
Q ss_pred c--cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543 84 L--ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (354)
Q Consensus 84 ~--~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~ 161 (354)
. ....+. ..+......... ......++...+..... ...++-+||||+++.. . .++....++
T Consensus 195 ~~~~~~~~~--~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~----~~~~~~LlvlDd~~~~--~-------~~~~~~~~~ 258 (1249)
T 3sfz_A 195 LLMKLQNLC--MRLDQEESFSQR-LPLNIEEAKDRLRVLML----RKHPRSLLILDDVWDP--W-------VLKAFDNQC 258 (1249)
T ss_dssp HHHHHHHHH--HHHTTTCTTCSS-CCSSHHHHHHHHHHHTS----SSSCSCEEEEESCCCH--H-------HHTTTCSSC
T ss_pred HHHHHHHHH--HHhhhhcccccC-CCCCHHHHHHHHHHHHh----ccCCCEEEEEecCCCH--H-------HHHhhcCCC
Confidence 0 000000 000000000000 00012222222222111 1123569999999842 1 233345667
Q ss_pred eEEEEecCCCcccHHHhhhcceeeecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 018543 162 RLILCCNSSSKVTEAIRSRCLNIRINS-PTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226 (354)
Q Consensus 162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~-~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R 226 (354)
++|+||.+.. +..........+.+.+ ++.++-.+.+...+....-.. ++....|++.++|-+=
T Consensus 259 ~ilvTtR~~~-~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~-~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 259 QILLTTRDKS-VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDL-PAEAHSIIKECKGSPL 322 (1249)
T ss_dssp EEEEEESSTT-TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTC-CTHHHHHHHHTTTCHH
T ss_pred EEEEEcCCHH-HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhC-cHHHHHHHHHhCCCHH
Confidence 8888877653 2111122235677775 999999999887663222122 3567889999888653
No 165
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.10 E-value=3e-06 Score=82.07 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=39.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++..+..+.+.+.+.. .+..+|+++++. .....+.+|..++
T Consensus 245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl 301 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVV 301 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEE
Confidence 47899999998 8899999888888887653 245566666654 3445566666544
No 166
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.09 E-value=7.1e-06 Score=78.34 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=40.9
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|++..+..+.+.+.+...+..+|+++++. .....+.+|+.++
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl-~~~~~~~d~i~vl 210 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL-IVLDYLTDLIHII 210 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCH-HHHHHHCSEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeCh-HHHHhhCCEEEEe
Confidence 46799999998 7899999999999998765556666666655 3445666666544
No 167
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.08 E-value=1.7e-05 Score=66.69 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=20.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++++++.+
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 8999999999999999999854
No 168
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.04 E-value=1.9e-06 Score=73.90 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+.|.||+|+||||+++.++..
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999843
No 169
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.1e-05 Score=78.13 Aligned_cols=55 Identities=5% Similarity=0.115 Sum_probs=38.1
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i 184 (354)
.+++++++||+ ..|+...+..+.+.+.+.. .+..+|+++++. .....+.+|+.++
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl 541 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVF 541 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEC
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 57899999998 7899999888888886642 234566655554 4445566665444
No 170
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.99 E-value=0.00037 Score=78.14 Aligned_cols=169 Identities=15% Similarity=0.232 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeC
Q 018543 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (354)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (354)
+.....+..++..+.. ..+.||+|||||++++.+|+.+ +.. .+.++
T Consensus 591 drcy~tl~~Al~~~~g--g~~~GPaGtGKTet~k~La~~l-gr~-------------------------------~~vfn 636 (3245)
T 3vkg_A 591 DRCYLTLTQALESRMG--GNPFGPAGTGKTETVKALGSQL-GRF-------------------------------VLVFC 636 (3245)
T ss_dssp HHHHHHHHHHHHTTCE--EEEECSTTSSHHHHHHHHHHHT-TCC-------------------------------EEEEE
T ss_pred HHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHh-CCe-------------------------------EEEEe
Confidence 3344556666655443 4689999999999999999976 211 11222
Q ss_pred CCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHh-------h--------------c
Q 018543 99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME-------K--------------Y 157 (354)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le-------~--------------~ 157 (354)
+++. . +...+..+++-+++.. .-.++||+++++.+....+...+. + .
T Consensus 637 C~~~-~-d~~~~g~i~~G~~~~G----------aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l 704 (3245)
T 3vkg_A 637 CDEG-F-DLQAMSRIFVGLCQCG----------AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISL 704 (3245)
T ss_dssp CSSC-C-CHHHHHHHHHHHHHHT----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEEC
T ss_pred CCCC-C-CHHHHHHHHhhHhhcC----------cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEee
Confidence 2221 1 1123444454445433 457999999999887766555442 1 0
Q ss_pred cCceeEEEEecC----CCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--------Hc----
Q 018543 158 SASCRLILCCNS----SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE--------KS---- 221 (354)
Q Consensus 158 ~~~~~~Il~~~~----~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~--------~s---- 221 (354)
.+++.++++.|. ...+++.+++||..+.+..|+.+.+.+++- ..+|+.-.......++. .|
T Consensus 705 ~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~H 781 (3245)
T 3vkg_A 705 HQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSH 781 (3245)
T ss_dssp CTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred cCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 123445555552 347999999999999999999999988875 35576533333333332 11
Q ss_pred -CCCHHHHHHHHHHHH
Q 018543 222 -NRSLRRAILSFETCR 236 (354)
Q Consensus 222 -~gd~R~ai~~L~~~~ 236 (354)
+=.+|.....|..+.
T Consensus 782 YDfGLRalKsVL~~AG 797 (3245)
T 3vkg_A 782 YDFGLRALKSVLVSAG 797 (3245)
T ss_dssp CCCSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHH
Confidence 234777777776553
No 171
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.96 E-value=0.00011 Score=63.70 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 72 (354)
+.|.||+|+||||+++.+++. ..+..+.+.+++..
T Consensus 5 v~lvG~nGaGKSTLln~L~g~-~~~~~G~i~~~g~~ 39 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKS-QVSRKASSWNREEK 39 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHH-HC------------
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCCCCCccccCCcc
Confidence 789999999999999999984 45566666555543
No 172
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.91 E-value=1.8e-05 Score=76.84 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=58.1
Q ss_pred CCCeEEEeCCCCCcHHHHHHHHHHHhcCC-CCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHH
Q 018543 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ 111 (354)
Q Consensus 33 ~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 111 (354)
..|.+.+.||+|+||||+++++++. ..+ +.|.+.+++..+....... .......+.+.+++....+...+.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~-------~~~~~~~i~~v~Q~~~l~~~~tv~ 115 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVN-------EDKWRGKVSYQDYEIEISDASEVE 115 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSS-------SSCCEEEESCC---CCCCCHHHHH
T ss_pred cCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCc-------cccceeEEeeecccccCCCHHHHH
Confidence 3456999999999999999999984 444 5677766665432000000 000112344555554555545555
Q ss_pred HHHHHHHhc---CCCCC---------CCCCCceEEEEeCC-------CcCCHHHHHHHHHHHhh
Q 018543 112 EVIKEMAKN---RPIDT---------KGKRGFKVLVLNEV-------DKLSREAQHSLRRTMEK 156 (354)
Q Consensus 112 ~~~~~~~~~---~~~~~---------~~~~~~~viiiDE~-------d~l~~~~~~~Ll~~le~ 156 (354)
+.+...... ..... .....++++++||+ ..+++.....+...+..
T Consensus 116 e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 116 KEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp TTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 555443211 00000 01235689999999 34454455555555544
No 173
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.89 E-value=9.7e-05 Score=67.00 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
+.+...++.|.. ++|.||+|+||||+++++++ +..+..+.+.+++
T Consensus 166 ~~l~~~i~~G~~--i~ivG~sGsGKSTll~~l~~-~~~~~~g~I~ie~ 210 (361)
T 2gza_A 166 SFLRRAVQLERV--IVVAGETGSGKTTLMKALMQ-EIPFDQRLITIED 210 (361)
T ss_dssp HHHHHHHHTTCC--EEEEESSSSCHHHHHHHHHT-TSCTTSCEEEEES
T ss_pred HHHHHHHhcCCE--EEEECCCCCCHHHHHHHHHh-cCCCCceEEEECC
Confidence 666777777776 99999999999999999998 5566666666654
No 174
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.87 E-value=6.3e-05 Score=66.30 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
++|+||||+|||+++..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 799999999999999999875
No 175
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.85 E-value=6.1e-05 Score=63.53 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++|+||||+||||+++.++..+.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999997654
No 176
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.81 E-value=2.3e-05 Score=66.13 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.|.||+|+||||+++.++..+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998543
No 177
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.80 E-value=1.3e-05 Score=63.64 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=29.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 73 (354)
+.|.||+|+||||+++.+++.+ +..+.+.+++...
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i 70 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTL 70 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEee
Confidence 8999999999999999999965 6667777766543
No 178
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.79 E-value=0.00013 Score=70.21 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=36.3
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC-------cccHHHhhhcceeeecCC
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS-------KVTEAIRSRCLNIRINSP 189 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~-------~l~~~l~sR~~~i~~~~~ 189 (354)
+.++|||||+..++......|++.+ +.+..+|++..... .....+.+.+..+.+...
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~QL~~v~~g~~~~~l~~~~~~~~L~~~ 342 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQV 342 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTSCCCSSSCCHHHHHHHHSCEEECCCC
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccccCCccCCcHHHHHHhcCCEEEccee
Confidence 5689999999999988777666554 35567777765432 233444444555555443
No 179
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.79 E-value=0.00043 Score=70.17 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=34.7
Q ss_pred ccCHHHHHHHHHHHhc-CCCCeEEEeCCCCCcHHHHHHHHHH
Q 018543 16 IVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 16 ~g~~~~~~~l~~~l~~-~~~~~~ll~Gp~G~GKTtla~~la~ 56 (354)
+|.+.....|..++.. +..+.+.++||.|+||||+|+.+++
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 8999999999988875 3334489999999999999999885
No 180
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.77 E-value=6.8e-05 Score=75.75 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=37.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~ 182 (354)
.+++++++||+ ..|+......|.+.+.+ .+..+|+++++. .....+.+|+.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl-~~l~~~adrii 616 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDS-VFLDNVCEYII 616 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCH-HHHHHHCSEEE
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCH-HHHHHhCCEEE
Confidence 47899999998 78999999999999987 345566665553 34445555543
No 181
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.75 E-value=4.1e-06 Score=80.08 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.7
Q ss_pred HhcCCCCeEEEeCCCCCcHHHHHHHH--HHHhcCCCCccccccccc
Q 018543 29 VTEQDCPHLLFYGPPGSGKKTLIMAL--LRQVFGPGAEKVKVENKT 72 (354)
Q Consensus 29 l~~~~~~~~ll~Gp~G~GKTtla~~l--a~~l~~~~~~~~~~~~~~ 72 (354)
+..|.. ++|.||||+||||+++.+ +. +..++.+.+.+++.+
T Consensus 36 i~~Ge~--~~l~G~nGsGKSTL~~~~ll~G-l~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 36 LPIGRS--TLVSGTSGTGKTLFSIQFLYNG-IIEFDEPGVFVTFEE 78 (525)
T ss_dssp EETTSE--EEEEESTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS
T ss_pred CCCCeE--EEEEcCCCCCHHHHHHHHHHHH-HHhCCCCEEEEEEeC
Confidence 334443 999999999999999995 44 444455566666543
No 182
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.73 E-value=8.5e-05 Score=59.99 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
++|.||||+||||+++.+++
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 89999999999999999997
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.73 E-value=0.00022 Score=58.16 Aligned_cols=123 Identities=18% Similarity=0.240 Sum_probs=65.2
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC--cc------
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF--QD------ 106 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~------ 106 (354)
+.+++++++|.||||+|-.++-...+.+....-+. |. ... ...-+...+.... +++.....+. ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ---F~--Kg~-~~~gE~~~l~~L~-v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ---FI--KGT-WPNGERNLLEPHG-VEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE---SS--CCS-SCCHHHHHHGGGT-CEEEECCTTCCCCGGGHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE---ee--CCC-CCccHHHHHHhCC-cEEEEcccccccCCCCcHHH
Confidence 34899999999999999999887765543211110 00 000 0000000010000 1111111111 01
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC------CcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 107 RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV------DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~------d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
....+..+........ .+++++||+||+ +.++.+ .++..+.+.+.+..+|++++....
T Consensus 102 ~~~a~~~l~~a~~~l~-----~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLA-----DPLLDMVVLDELTYMVAYDYLPLE---EVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHHHHHHTT-----CTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHHHHHh-----cCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhCcCCCEEEEECCCCcH
Confidence 1123333333333221 357899999998 344443 578888888888999999998754
No 184
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.72 E-value=1.9e-05 Score=71.07 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCe---EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 23 QNLKKLVTEQDCPH---LLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 23 ~~l~~~l~~~~~~~---~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
..|...+..|.++. ++|+||||+||||++..++..+..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35566665233332 899999999999999999987643
No 185
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.68 E-value=0.0001 Score=67.02 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=21.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+++.||+|+||||+++++++.+.
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999653
No 186
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.67 E-value=5.7e-05 Score=66.54 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=21.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++|.||||+||||+++.++..+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998664
No 187
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.66 E-value=2.1e-05 Score=70.94 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
++++||||+||||++..++..+...
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC
Confidence 8999999999999999998766543
No 188
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.66 E-value=0.00018 Score=66.54 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=33.3
Q ss_pred eEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543 132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSS 170 (354)
Q Consensus 132 ~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 170 (354)
+++|+||+ ..|+......+.+.|.+...+..+|++|+++
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~ 356 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLA 356 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 89999998 6799999999999998876667777787775
No 189
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.65 E-value=0.00019 Score=59.94 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPG 62 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~ 62 (354)
+++.|++|+||||++-.+|..+...+
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 99999999999999999998875443
No 190
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.65 E-value=0.00026 Score=59.12 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
++|+||||+||||+++.++.
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999987
No 191
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.64 E-value=7e-05 Score=61.35 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
.+++||.|+||||.+..++.....
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~ 34 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI 34 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 899999999999998888877643
No 192
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.63 E-value=6.1e-05 Score=64.07 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|+||||+||||+++.++...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 8999999999999999999863
No 193
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.62 E-value=0.00097 Score=63.39 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=51.0
Q ss_pred ceEEEEeCCCcC----CHHHHHHHHHHHhhc-cCceeEEEEecCCC--cccHHHhhhcc-eeeecCCCHHHHHHHHH
Q 018543 131 FKVLVLNEVDKL----SREAQHSLRRTMEKY-SASCRLILCCNSSS--KVTEAIRSRCL-NIRINSPTEEQIVKVLE 199 (354)
Q Consensus 131 ~~viiiDE~d~l----~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~--~l~~~l~sR~~-~i~~~~~~~~~~~~~L~ 199 (354)
+-+|||||++.+ ..+....|.++..+. .-+..+|++|..++ .+...+++-|. .|.|.-.+..+...+|.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 468999999866 344555666666554 34677888888877 67888999885 58888888888887774
No 194
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.59 E-value=0.00076 Score=57.09 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=16.8
Q ss_pred eEEEeCCCCCcHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALL 55 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la 55 (354)
.+++.||+|+||||++..++
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 49999999999998776554
No 195
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.58 E-value=6.6e-05 Score=67.10 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+++.+...++.|..++++|.||+|+||||+++++++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345566666777888889999999999999999999976
No 196
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.57 E-value=0.00071 Score=62.49 Aligned_cols=26 Identities=42% Similarity=0.540 Sum_probs=23.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPG 62 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~ 62 (354)
+++.||+|+||||++..+|..+...+
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999998776543
No 197
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.55 E-value=7.5e-05 Score=66.09 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.3
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|+||+|+||||+++.+|+.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999976
No 198
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.53 E-value=7.1e-05 Score=67.54 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|+||||+||||+++.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999864
No 199
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.53 E-value=0.00043 Score=74.69 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.5
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
.++|+||||||||++|.+++.+....
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 39999999999999999998876443
No 200
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.52 E-value=0.00021 Score=69.42 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=26.9
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 170 (354)
..+++||||+++++......|++.+ +.+..+|++....
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~~ 299 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRD 299 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTT
T ss_pred CCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcchh
Confidence 5689999999999876655555543 4567777765543
No 201
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.52 E-value=0.00058 Score=58.83 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.7
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.++|.|+||+||||+++.++..+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999875
No 202
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.51 E-value=0.0011 Score=62.37 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=46.1
Q ss_pred eEEEEeCCCcCCH----HHHHHHHHHHhhcc-CceeEEEEecCCC--cccHHHhhhcc-eeeecCCCHHHHHHHHH
Q 018543 132 KVLVLNEVDKLSR----EAQHSLRRTMEKYS-ASCRLILCCNSSS--KVTEAIRSRCL-NIRINSPTEEQIVKVLE 199 (354)
Q Consensus 132 ~viiiDE~d~l~~----~~~~~Ll~~le~~~-~~~~~Il~~~~~~--~l~~~l~sR~~-~i~~~~~~~~~~~~~L~ 199 (354)
-+++|||+..+-. ...+.+.++..... .+..+|++|..++ .+...+++.|. .|.|.-.+..+...++.
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 4899999855432 22333444444433 3677888888877 47777888774 68888888888887775
No 203
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.49 E-value=0.00036 Score=62.17 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=26.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
+.|.||+|+||||+++.++..+ .+..+.+.+.+.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l-~~~~g~V~l~g~ 165 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWL-KNHGFSVVIAAS 165 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HhcCCEEEEEee
Confidence 8999999999999999999855 445555555544
No 204
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.49 E-value=0.0001 Score=74.45 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=18.5
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
++|+||+|+||||+++.++.
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999854
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.45 E-value=0.00048 Score=63.61 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
+++.||+|+||||++..+|..+..
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999987643
No 206
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.43 E-value=0.00063 Score=60.00 Aligned_cols=36 Identities=31% Similarity=0.225 Sum_probs=28.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 72 (354)
.+.|.||+|+||||+++.++..+ .+..+.+.+.+.+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g~D 139 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCAGD 139 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeec
Confidence 38899999999999999999855 4556666666543
No 207
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.41 E-value=0.00072 Score=59.33 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=33.2
Q ss_pred eeecCC-CHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 018543 184 IRINSP-TEEQIVKVLEFIAKKEGL--------QLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242 (354)
Q Consensus 184 i~~~~~-~~~~~~~~L~~~~~~~~~--------~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~ 242 (354)
+.++|. .+.+++..+...+...|. .+|++... .....|.++.+..||.....+.++
T Consensus 112 ~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~---~i~pnd~~Ri~RALEV~~~TG~~~ 176 (322)
T 3exa_A 112 FNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAA---AIHPNNYRRVIRALEIIKLTGKTV 176 (322)
T ss_dssp CCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHT---TSCTTCHHHHHHHHHHHHHTC---
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHh---hcCcccHHHHHHHHHHHHHHCCCH
Confidence 355554 345677777777666653 23333221 235689999999999776655544
No 208
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.40 E-value=0.00021 Score=59.11 Aligned_cols=38 Identities=13% Similarity=0.293 Sum_probs=26.6
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 170 (354)
++.+|+|||++.++++..+.+ +.+.+ .+..+|++.-+.
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSB
T ss_pred CCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEeccc
Confidence 468999999999988766444 43332 356788877643
No 209
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.40 E-value=0.00032 Score=70.72 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=27.4
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHH-HHHhhc--cCceeEEEEecCC
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLR-RTMEKY--SASCRLILCCNSS 170 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll-~~le~~--~~~~~~Il~~~~~ 170 (354)
.+++++++||+ .++++.....+. .+++.. ..++.+|++|++.
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~ 796 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP 796 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence 35689999998 678887666665 455543 1345666666654
No 210
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.40 E-value=0.00016 Score=63.51 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++++||||+||||++..++....
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999888776654
No 211
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.38 E-value=0.00042 Score=65.62 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
...+...+...++.|.. +++.||+|+||||+++++++ +..++.+.+.+++
T Consensus 246 ~~~~l~~l~~~v~~g~~--i~I~GptGSGKTTlL~aL~~-~i~~~~giitied 295 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFS--AIVVGETASGKTTTLNAIMM-FIPPDAKVVSIED 295 (511)
T ss_dssp CHHHHHHHHHHHHTTCC--EEEEESTTSSHHHHHHHHGG-GSCTTCCEEEEES
T ss_pred CHHHHHHHHHHHhCCCE--EEEECCCCCCHHHHHHHHHh-hCCCCCCEEEEcC
Confidence 46677788888887765 99999999999999999988 4455555555544
No 212
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.38 E-value=0.0011 Score=56.28 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.....+..+++. ...+++||+|+|||.++..++..+
T Consensus 96 ~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 96 DYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 4444455555543 249999999999999998887754
No 213
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.38 E-value=0.00031 Score=69.65 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|+||+|+||||+.+.++...
T Consensus 579 ~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 579 VLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHhhh
Confidence 8999999999999999999854
No 214
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.37 E-value=0.0016 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|+||||+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999865
No 215
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.34 E-value=0.00013 Score=59.22 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=22.1
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.++|+||+|+||||+++.+++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999876
No 216
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.33 E-value=0.00011 Score=59.35 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=21.3
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|+||||+||||+++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999976
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.33 E-value=0.00034 Score=63.09 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
++++||||+||||++..++..+...
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999998876543
No 218
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.33 E-value=0.00012 Score=60.40 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.0
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
..++|.||+|+||||+++.+++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 359999999999999999999876
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.32 E-value=0.0016 Score=58.87 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
++|+||||+|||+++..++..+..
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~ 100 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQK 100 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHH
Confidence 899999999999999999877643
No 220
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.31 E-value=0.00016 Score=59.70 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.7
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
..+.|.||+|+||||+++.+++.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 349999999999999999999866
No 221
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.30 E-value=0.00015 Score=58.06 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.||+|+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 222
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.29 E-value=0.00014 Score=58.38 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.1
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.|+||+|+||||+++.+++.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999865
No 223
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.28 E-value=0.00043 Score=70.00 Aligned_cols=40 Identities=20% Similarity=0.423 Sum_probs=32.2
Q ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSS 170 (354)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 170 (354)
.+++++|+||+ ..|+......+.+.+.+.. ..+|++|++.
T Consensus 918 ~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g--~tVIiISHD~ 958 (986)
T 2iw3_A 918 QRPHLIVLDEPTNYLDRDSLGALSKALKEFE--GGVIIITHSA 958 (986)
T ss_dssp TCCSEEEEECGGGTCCHHHHHHHHHHHHSCS--SEEEEECSCH
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHhC--CEEEEEECCH
Confidence 57899999998 7899999999999998763 4566666653
No 224
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.25 E-value=0.00018 Score=57.93 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=21.9
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.++|.||||+||||+++.+++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999876
No 225
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.24 E-value=0.0079 Score=49.98 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=33.7
Q ss_pred CCceEEEEeCCCcCC--HHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhh
Q 018543 129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180 (354)
Q Consensus 129 ~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR 180 (354)
.+.+++|+||+|.+. ......+..++...+....+++.|..+..-...+.++
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 456899999999773 3555566666666665677777766665434444433
No 226
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.23 E-value=0.00035 Score=57.99 Aligned_cols=35 Identities=34% Similarity=0.409 Sum_probs=25.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcC--CCCcccccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFG--PGAEKVKVENK 71 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~~~~ 71 (354)
+.|.||+|+||||+++.+++.+.. +..+.+..++.
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 889999999999999999996642 23344444443
No 227
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.22 E-value=0.00021 Score=57.74 Aligned_cols=24 Identities=42% Similarity=0.683 Sum_probs=21.8
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.++|+|+||+||||+++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 349999999999999999999876
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.22 E-value=0.00032 Score=65.53 Aligned_cols=93 Identities=22% Similarity=0.296 Sum_probs=49.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~ 116 (354)
+.|.||+|+||||+++.+++.+ .+..+.+.+.+.+.. ..... -..........+.+..+..+......+.+.+..
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~~--r~aa~--eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDTF--RAAAV--EQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCTT--CHHHH--HHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCccc--chhhH--HHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 8899999999999999999865 344555555433211 00000 000000001123344444343333455565544
Q ss_pred HHhcCCCCCCCCCCceEEEEeCCCcCC
Q 018543 117 MAKNRPIDTKGKRGFKVLVLNEVDKLS 143 (354)
Q Consensus 117 ~~~~~~~~~~~~~~~~viiiDE~d~l~ 143 (354)
... .++.+++||=+.++.
T Consensus 371 a~~---------~~~DvVLIDTaGrl~ 388 (503)
T 2yhs_A 371 AKA---------RNIDVLIADTAGRLQ 388 (503)
T ss_dssp HHH---------TTCSEEEECCCCSCC
T ss_pred HHh---------cCCCEEEEeCCCccc
Confidence 332 234789999987764
No 229
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.22 E-value=0.0001 Score=60.17 Aligned_cols=21 Identities=52% Similarity=0.735 Sum_probs=19.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
++|.||||+||||+++.+++.
T Consensus 12 i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999874
No 230
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.21 E-value=0.0035 Score=52.01 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.0
Q ss_pred CCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 32 QDCPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 32 ~~~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+..+++++.|++|+||||++..+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445669999999999999999998754
No 231
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.19 E-value=0.00019 Score=68.49 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+++.||||+||||+++.++....
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998654
No 232
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.18 E-value=0.0047 Score=50.71 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=31.0
Q ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCcccHHHhh
Q 018543 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 179 (354)
.+.+++|+||+|.+... ....+..++...+....+++.|...+.-...+.+
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 194 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAE 194 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHH
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHH
Confidence 45689999999976432 2344555555555566677776666543333333
No 233
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00023 Score=57.67 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++.+++.+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999854
No 234
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.14 E-value=0.00025 Score=57.77 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.||||+||||+++.++..+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999976
No 235
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.14 E-value=0.00038 Score=57.41 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.9
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.+.|.||+|+||||+++.+++.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999774
No 236
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.13 E-value=0.0018 Score=56.89 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.|+||+||||+++.++..+
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999853
No 237
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.13 E-value=0.00032 Score=58.77 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=22.0
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
..++|.|+||+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 459999999999999999999976
No 238
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.13 E-value=0.00031 Score=56.11 Aligned_cols=25 Identities=36% Similarity=0.451 Sum_probs=22.1
Q ss_pred CCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 34 CPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 34 ~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.+++|.|++|+||||+++.+++.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999976
No 239
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.12 E-value=0.00023 Score=61.13 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||||+||||+++.+++.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999875
No 240
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.12 E-value=0.00031 Score=61.49 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||||+||||+++.++..+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999865
No 241
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.11 E-value=0.0012 Score=65.75 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|+||+|+||||+.+.++...
T Consensus 610 ~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 610 LIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 8999999999999999999753
No 242
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.11 E-value=0.00072 Score=62.75 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
.+++.+ --+..|.. +.|.||+|+||||+++.+++. ..++.+.+.+.+.
T Consensus 146 ~vld~v-l~i~~Gq~--~~IvG~sGsGKSTLl~~Iag~-~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 146 RAINAL-LTVGRGQR--MGLFAGSGVGKSVLLGMMARY-TRADVIVVGLIGE 193 (438)
T ss_dssp HHHHHH-SCCBTTCE--EEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESC
T ss_pred eEEeee-EEecCCCE--EEEECCCCCCHHHHHHHHhcc-cCCCeEEEEEece
Confidence 344544 44444544 899999999999999999994 5666666666554
No 243
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.10 E-value=0.00028 Score=58.23 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.||+|+||||+++.+++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999876
No 244
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.10 E-value=0.00026 Score=57.76 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.8
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.++|.||||+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999773
No 245
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.09 E-value=0.00031 Score=57.02 Aligned_cols=22 Identities=41% Similarity=0.844 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||||+||||+++.+++.+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999866
No 246
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.08 E-value=0.0015 Score=54.61 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=27.2
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 169 (354)
++.+|+|||++.+.. ...+.+.+.+ .+..+|++.-+
T Consensus 90 ~~dvViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp TCSEEEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred cCCEEEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 358999999999874 5667777766 45678887766
No 247
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.08 E-value=0.00097 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.+.||+|+||||++..+|..+.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78889999999999999998664
No 248
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.08 E-value=0.00087 Score=61.75 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=37.9
Q ss_pred CCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccc
Q 018543 10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV 68 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (354)
.+++++--.......|+..+. .....+++.||+|+||||+++++++.+ .+..+.+..
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~ 200 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILT 200 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEE
T ss_pred CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEE
Confidence 456666545555556666653 222238999999999999999999865 333444443
No 249
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.08 E-value=0.0032 Score=55.16 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+++.||+|+|||+++..+|+.+
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 8899999999999999999875
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.08 E-value=0.00033 Score=58.67 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.+.-.+..|.. +.|.||+|+||||+++.+++.+
T Consensus 14 ~~isl~i~~G~~--~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNNIYP--LVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------CCCC--EEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCCCCE--EEEECCCCCCHHHHHHHHHhhC
Confidence 344445566665 9999999999999999999844
No 251
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.07 E-value=0.00028 Score=57.59 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.|+||+||||+++.++..+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999876
No 252
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.06 E-value=0.0004 Score=56.45 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=21.3
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHH
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~ 57 (354)
..++|+|++|+||||+++.++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999999999999986
No 253
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.05 E-value=0.00035 Score=56.16 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.0
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.||+|+||||+++.+++.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 38999999999999999999865
No 254
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.05 E-value=0.00047 Score=58.96 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhc---CCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 19 QDIAQNLKKLVTE---QDCPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 19 ~~~~~~l~~~l~~---~~~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
..+.+.+...+.. |.. +.|.||+|+||||+++.+++.+
T Consensus 32 ~~~l~~~~~~i~~~l~g~~--i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRS--MYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCC--EEEECSTTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCE--EEEECCCCCCHHHHHHHHHHhc
Confidence 3455666656655 554 9999999999999999999976
No 255
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.04 E-value=0.00079 Score=61.67 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|+||||+||||+++.++-..
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 8999999999999999876443
No 256
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.04 E-value=0.0017 Score=59.85 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++.+++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8999999999999999998743
No 257
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.04 E-value=0.0031 Score=55.56 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+++.||+|+||||++..+|..+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHH
Confidence 88999999999999999998664
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.03 E-value=0.0028 Score=55.65 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.6
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.++|.||+|+||||++..+|..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998764
No 259
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.03 E-value=0.0007 Score=57.70 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=21.3
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.||||+||||+++.+++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999876
No 260
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.03 E-value=0.00041 Score=56.70 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.9
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
..++|.|+||+||||+++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999999876
No 261
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.02 E-value=0.00038 Score=56.45 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.3
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|+|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999876
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.02 E-value=0.00033 Score=58.10 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=22.5
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+..|.. +.|.||+|+||||+++++++.+
T Consensus 16 ~i~~Gei--~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRV--VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCE--EEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCE--EEEECCCCCCHHHHHHHHHhhC
Confidence 3445544 8999999999999999999854
No 263
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.02 E-value=0.0019 Score=59.59 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++++|+||+||||+++.++..+
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999998754
No 264
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.01 E-value=0.00037 Score=59.81 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=21.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+++.||+|+||||+++.+|+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 37899999999999999999976
No 265
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.01 E-value=0.00029 Score=60.15 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.+.+.-.+..|.. +.|.||+|+||||+++.+++.+
T Consensus 14 ~l~~isl~i~~g~i--igI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 14 GTENLYFQSMRPFL--IGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ---------CCSEE--EEEECSTTSSHHHHHHHHHHHH
T ss_pred eecceeccCCCCEE--EEEECCCCCCHHHHHHHHHHHh
Confidence 44444444444432 8899999999999999999865
No 266
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.01 E-value=0.00045 Score=56.91 Aligned_cols=22 Identities=36% Similarity=0.767 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++.+++.+
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999854
No 267
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.00 E-value=0.00042 Score=55.46 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.|++|+||||+++.++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 268
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.99 E-value=0.0004 Score=57.87 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||||+||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.99 E-value=0.00038 Score=55.65 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.3
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.||||+||||+++.+ ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4889999999999999999 544
No 270
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.98 E-value=0.0006 Score=59.94 Aligned_cols=35 Identities=31% Similarity=0.604 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.+.-.+..|.. +.|+||+|+||||+++.+++.+
T Consensus 116 L~~vsl~i~~Ge~--vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 116 LKLWLKGIPKKNC--LAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHTCTTCSE--EEEECSSSSSHHHHHHHHHHHH
T ss_pred hccceEEecCCCE--EEEECCCCCcHHHHHHHHhhhc
Confidence 3344444444543 9999999999999999999965
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.98 E-value=0.00039 Score=57.38 Aligned_cols=21 Identities=33% Similarity=0.755 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+.|.||+|+||||+++.+++.
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 889999999999999999985
No 272
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.98 E-value=0.00044 Score=57.96 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.0
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
..++|.||||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999999976
No 273
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.97 E-value=0.00052 Score=55.90 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.|+||+||||+++.++..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 274
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.97 E-value=0.00044 Score=56.97 Aligned_cols=23 Identities=39% Similarity=0.788 Sum_probs=21.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.|+||+||||+++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 275
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.97 E-value=0.0014 Score=58.86 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|+||||+|||+++..++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998864
No 276
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.96 E-value=0.0004 Score=57.41 Aligned_cols=22 Identities=45% Similarity=0.764 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||+|+||||+++.++..+
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999865
No 277
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.96 E-value=0.00041 Score=56.53 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
++|.||+|+||||+++.+++.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhcc
Confidence 789999999999999999873
No 278
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.00047 Score=56.26 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.|+||+||||+++.+++.+
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 279
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.96 E-value=0.0098 Score=45.80 Aligned_cols=121 Identities=13% Similarity=0.016 Sum_probs=73.1
Q ss_pred HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543 28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR 107 (354)
Q Consensus 28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 107 (354)
.++++-.|.++|+|+.-.-....+..+.+.+...+... ......+..
T Consensus 12 ~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e-----------------------------~~~~~~~~~---- 58 (140)
T 1jql_B 12 QLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE-----------------------------HHTFSIDPN---- 58 (140)
T ss_dssp HHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCE-----------------------------EECCCCSTT----
T ss_pred HHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcc-----------------------------eeEEEecCC----
Confidence 34434344599999987666666666666543221110 000000111
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCc-CCHHHHHHHHHHHhhccCceeEEEEecCCC------cccHHHhhh
Q 018543 108 YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAIRSR 180 (354)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~------~l~~~l~sR 180 (354)
....+++..... .|+ .+++++|++.+++. +..+..+.|..+++.+++.+.+|++....+ ++.+++...
T Consensus 59 ~~~~~l~~~~~s-~sl----F~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~ 133 (140)
T 1jql_B 59 TDWNAIFSLCQA-MSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR 133 (140)
T ss_dssp CCHHHHHHHHHC-CCT----TCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGG
T ss_pred CCHHHHHHHHhc-CCC----CCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhC
Confidence 235566655443 443 46789999999854 667777889999999988888888875433 355666555
Q ss_pred cceeee
Q 018543 181 CLNIRI 186 (354)
Q Consensus 181 ~~~i~~ 186 (354)
..++.+
T Consensus 134 g~~v~~ 139 (140)
T 1jql_B 134 SVQVTC 139 (140)
T ss_dssp CEEEEC
T ss_pred eEEEEe
Confidence 555543
No 280
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.96 E-value=0.0099 Score=49.49 Aligned_cols=44 Identities=11% Similarity=0.295 Sum_probs=28.5
Q ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
.+.+++|+||+|.+... ....+..++...+....+++.|.....
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 45689999999976432 334455666655556667776666553
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.95 E-value=0.00047 Score=57.09 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.8
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.++|.|+||+||||+++.+++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999999763
No 282
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.95 E-value=0.00048 Score=57.10 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||||+||+|.++.+++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999976
No 283
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.94 E-value=0.00063 Score=57.54 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=22.0
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
..++|.|+||+||||+++.+++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999976
No 284
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.94 E-value=0.00043 Score=56.35 Aligned_cols=22 Identities=36% Similarity=0.754 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++.+++.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999854
No 285
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.93 E-value=0.00035 Score=56.49 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=17.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999865
No 286
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.93 E-value=0.0014 Score=64.30 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
++...+.+..++.+. +..|++||||||||+++-.+...+...
T Consensus 191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 566677777777644 348999999999998776666555543
No 287
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.93 E-value=0.00043 Score=57.14 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++.+++.+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 8999999999999999999854
No 288
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.92 E-value=0.0008 Score=71.73 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+++|||||||||++|++++.+-.
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhh
Confidence 99999999999999999988653
No 289
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.92 E-value=0.0011 Score=59.72 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=27.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
+.|.||+|+||||+++.++..+ .+..+.+.+.+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~ 193 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAG 193 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECC
T ss_pred EEEEcCCCChHHHHHHHHHhhc-cccCCEEEEecc
Confidence 8899999999999999999965 344556655554
No 290
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.91 E-value=0.00052 Score=58.56 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=21.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.|.||||+||||+++.+++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999765
No 291
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.91 E-value=0.00057 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=21.1
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 292
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.91 E-value=0.00049 Score=57.50 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.9
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
..++|.|+||+||||+++.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999976
No 293
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.90 E-value=0.00055 Score=56.30 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=21.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 37899999999999999999976
No 294
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.90 E-value=0.0086 Score=59.73 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=18.1
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.||+|+|||+++..++..
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999977766543
No 295
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.90 E-value=0.00064 Score=56.73 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||||+||+|.++.+++.+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999876
No 296
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.90 E-value=0.0012 Score=54.36 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.+.||+|+||||+++.++..+
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999865
No 297
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.89 E-value=0.00074 Score=61.30 Aligned_cols=23 Identities=52% Similarity=0.638 Sum_probs=21.0
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|+||||+||||+++++++..
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 39999999999999999999864
No 298
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.00051 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.|+||+||||+++.+++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999876
No 299
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.88 E-value=0.00052 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.7
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
..++|.||||+||||+++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 349999999999999999999865
No 300
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.88 E-value=0.00059 Score=56.22 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.1
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.|++|+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999865
No 301
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.88 E-value=0.00075 Score=61.98 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHhcCC------------------CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 18 HQDIAQNLKKLVTEQD------------------CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~------------------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
...+.+.+...++.|. ...+.|.||+|+||||+++++++ +..++.+.+.+++
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G-l~~p~~GsI~~~g 104 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG-IGNEEEGAAKTGV 104 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT-CCTTSTTSCCCCC
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC-CCCccCceEEECC
Confidence 3556666777777776 12489999999999999999997 5566666655554
No 302
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.88 E-value=0.0019 Score=69.83 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
++++||||+|||+++..++.+....
T Consensus 1084 vll~G~~GtGKT~la~~~~~ea~k~ 1108 (2050)
T 3cmu_A 1084 VEIYGPESSGKTTLTLQVIAAAQRE 1108 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999998876544
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.86 E-value=0.00056 Score=56.80 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++.++..+
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHST
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8999999999999999999854
No 304
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.86 E-value=0.0011 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=19.5
Q ss_pred EEEeCCCCCcHH-HHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKK-TLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKT-tla~~la~~l~ 59 (354)
+++|||.|+||| .+++++.+...
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~ 46 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQI 46 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 899999999999 78888877653
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.00063 Score=57.08 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.|.||+|+||||+++.+++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999865
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.85 E-value=0.00066 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++|.|++|+||||+++.++..+.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999774
No 307
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.84 E-value=0.0015 Score=57.11 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.+.||+|+||||+++.+++.+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 88999999999999999998663
No 308
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.84 E-value=0.0019 Score=63.51 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=30.2
Q ss_pred eEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCC
Q 018543 132 KVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS 171 (354)
Q Consensus 132 ~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 171 (354)
+++++||+ ..|++..+..+.+++.+.. .+..+|+++++.+
T Consensus 224 ~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 224 VLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp CEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 49999998 7899888888888886543 3456777777654
No 309
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.84 E-value=0.014 Score=51.15 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=29.8
Q ss_pred CCceEEEEeCCCcCCH--HHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
...++|||||+|.+.. .....+..++...+.++.+++.+.....
T Consensus 234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence 3568999999998753 3445555666665666777777666553
No 310
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.82 E-value=0.0007 Score=55.17 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999976
No 311
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.81 E-value=0.0033 Score=64.38 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=17.6
Q ss_pred EEEeCCCCCcHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMAL 54 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~l 54 (354)
++|+||+|+||||+++.+
T Consensus 792 ~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 792 VLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHH
Confidence 899999999999999999
No 312
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.80 E-value=0.00074 Score=56.70 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||||+||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 313
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.80 E-value=0.0075 Score=53.46 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
+.++||+|+||||++..+|..+..
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999987643
No 314
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.79 E-value=0.0093 Score=54.05 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=28.5
Q ss_pred CCceEEEEeCCCcCCH--HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.++||+||+|.+.. .....+..++...+....+|+.|..+.
T Consensus 144 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 144 QKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp TTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred ccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 4568999999997653 233445555555556677777776655
No 315
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.79 E-value=0.00076 Score=55.15 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999876
No 316
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.00081 Score=56.11 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=34.7
Q ss_pred ccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 16 ~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
-.+.+....++.....++.+.+++.|++|+||||++..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3456666777777766677779999999999999999999875
No 317
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.78 E-value=0.00066 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.7
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.++|.|++|+||||+++.+++.+.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998763
No 318
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.78 E-value=0.00068 Score=56.48 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=21.1
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.||||+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 319
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.76 E-value=0.00083 Score=54.61 Aligned_cols=22 Identities=36% Similarity=0.754 Sum_probs=19.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|+||+|+||||+++.+....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999987753
No 320
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.75 E-value=0.00096 Score=55.36 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.|++|+||||+++.+++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999876
No 321
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.72 E-value=0.014 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.8
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.++|.|++|+||||++..+.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4999999999999999998763
No 322
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.72 E-value=0.0011 Score=53.35 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.|++|+||||+++.++..+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999876
No 323
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.72 E-value=0.00066 Score=59.79 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=27.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
+.|.||+|+||||+++.++..+. +..+.+.+.+.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~ 136 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAG 136 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEee
Confidence 88999999999999999998653 44566655554
No 324
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.70 E-value=0.01 Score=48.63 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=28.1
Q ss_pred CCceEEEEeCCCcCCH-HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.+++|+||+|.+.. +....+..++...+....+++.|....
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 4568999999996643 344555566665555566676666554
No 325
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.00096 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.1
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999865
No 326
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.67 E-value=0.00089 Score=55.51 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++.+++.+
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999865
No 327
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.67 E-value=0.039 Score=42.95 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+++.|++|+||||++..+...-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997654
No 328
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.66 E-value=0.0015 Score=53.62 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||+|+||||+++.+++..
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8999999999999999999853
No 329
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.65 E-value=0.0019 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.|++|+||||+++.+++.+
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.63 E-value=0.00086 Score=55.41 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=19.0
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
+.|.||+|+||||+++.+++
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.62 E-value=0.00093 Score=55.07 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.7
Q ss_pred eEEEeCCCCCcHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~ 56 (354)
.+.|+||+|+||||+++.+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 478999999999999999998
No 332
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.62 E-value=0.0027 Score=56.04 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcC-CCCccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKV 68 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~ 68 (354)
+.|.||+|+||||+++.+++.+.. +..+.+.+
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 889999999999999999985431 45555544
No 333
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.62 E-value=0.002 Score=53.86 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
++..+.++..+...+.+.+++.|++|+||||++..++.....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 445566777766666666999999999999999999987643
No 334
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.62 E-value=0.0081 Score=50.53 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=31.0
Q ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCcccHHHhh
Q 018543 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 179 (354)
.+.+++|+||+|.+... ....+..+++..+....+++.|.....-...+.+
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 221 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLAR 221 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHH
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHH
Confidence 45689999999976432 2445666666666566666666655433333333
No 335
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.61 E-value=0.0043 Score=59.98 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
|..++..+...+.++. .++++++|.|+|||..+-.++..+..
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHh
Confidence 4555555555554443 45899999999999998888776643
No 336
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.59 E-value=0.0015 Score=61.06 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=31.8
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 74 (354)
..+.|.||+|+||||++++++. +..++.+.+.+++..+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT-ALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH-HHCCCTTTCCCCCTTSC
T ss_pred ceEEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEEcc
Confidence 3488999999999999999998 56777787877776543
No 337
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.58 E-value=0.00058 Score=57.65 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=14.5
Q ss_pred EEEeCCCCCcHHHHHHHHH-HH
Q 018543 37 LLFYGPPGSGKKTLIMALL-RQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la-~~ 57 (354)
+.|.||+|+||||+++.++ +.
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEECSCC----CHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999999 74
No 338
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.56 E-value=0.023 Score=49.27 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=27.1
Q ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.++||+||+|.+... .+..++........+++.|..+.
T Consensus 224 ~~~~~vIiDEaH~~~~~---~~~~il~~~~~~~~~l~lSATp~ 263 (282)
T 1rif_A 224 SQFGMMMNDECHLATGK---SISSIISGLNNCMFKFGLSGSLR 263 (282)
T ss_dssp GGEEEEEEETGGGCCHH---HHHHHTTTCTTCCEEEEECSSCC
T ss_pred hhCCEEEEECCccCCcc---cHHHHHHHhhcCCeEEEEeCCCC
Confidence 45689999999999865 45555555544566666665554
No 339
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.56 E-value=0.0024 Score=56.55 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++.++..+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999865
No 340
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.56 E-value=0.0063 Score=65.01 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
++|+||||+|||+++..++......
T Consensus 37 ~lI~G~pGsGKT~LAlqla~~~~~~ 61 (1706)
T 3cmw_A 37 VEIYGPESSGKTTLTLQVIAAAQRE 61 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhC
Confidence 9999999999999999998765433
No 341
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.55 E-value=0.0014 Score=55.19 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.|.||+|+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 342
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.55 E-value=0.0079 Score=59.11 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=32.2
Q ss_pred CceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCC
Q 018543 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS 171 (354)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 171 (354)
+++++++||+ ..|++..+..+++.+.+.. .+..+|+++++.+
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3589999998 7899999988888886653 3456777777754
No 343
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.53 E-value=0.014 Score=49.71 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=28.0
Q ss_pred CCceEEEEeCCCcCCH-HHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
...+++|+||+|.+.. .....+.+++...+....+++.|.....
T Consensus 185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 229 (249)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCH
T ss_pred cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCH
Confidence 4568999999997643 2334455666655555666666665553
No 344
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.50 E-value=0.0047 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=19.0
Q ss_pred eEEEeCCCCCcHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~ 56 (354)
.+++.|++|+||||+++.+.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 389999999999999998865
No 345
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.47 E-value=0.0015 Score=55.85 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.1
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.|.||+|+||||+++.+++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999765
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.45 E-value=0.0017 Score=55.53 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.|.|++|+||||+++.++..+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999865
No 347
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.45 E-value=0.021 Score=47.75 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=26.0
Q ss_pred CCceEEEEeCCCcCCHH--HHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSRE--AQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~--~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.+++|+||+|.+... ....+..++...+....+++.|....
T Consensus 165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYP 209 (230)
T ss_dssp GGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred ccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccC
Confidence 35579999999976321 33444555555555566666655544
No 348
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.44 E-value=0.011 Score=49.73 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=27.7
Q ss_pred CCceEEEEeCCCcCCH-HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
...+++|+||+|.+.. .....+..++...+....+++.|....
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 4568999999997642 223445555655555667777666654
No 349
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.44 E-value=0.0024 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.8
Q ss_pred CCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 34 CPHLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 34 ~~~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++.+.|.|++|+||||++..++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 44589999999999999999998764
No 350
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.44 E-value=0.033 Score=45.20 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~ 56 (354)
.+++.|++|+|||++++.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999986654
No 351
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.43 E-value=0.013 Score=50.21 Aligned_cols=43 Identities=14% Similarity=0.352 Sum_probs=27.8
Q ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.++|||||+|.+... ....+..++...+....+++.|....
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 45689999999976432 33445555665555666676665554
No 352
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.39 E-value=0.022 Score=50.95 Aligned_cols=43 Identities=14% Similarity=0.330 Sum_probs=28.6
Q ss_pred CCceEEEEeCCCcCCH-HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.+++|+||+|.+.. .....+.+.+...+....+++.|..+.
T Consensus 146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 189 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMP 189 (367)
T ss_dssp TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccC
Confidence 4568999999987632 234455666666556677777766665
No 353
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.39 E-value=0.002 Score=53.09 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=21.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.|.|++|+||||+++.+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999999999876
No 354
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.38 E-value=0.012 Score=46.29 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+.+.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999764
No 355
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.38 E-value=0.0009 Score=56.24 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=23.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 71 (354)
+.|.||+|+||||++++++..+ .+..+.+.+++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~-~~~~G~i~~~g~ 63 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL-IPDLTLLHFRNT 63 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH-SCCTTTC-----
T ss_pred EEEECCCCCCHHHHHHHHhccc-ccCCCeEEECCE
Confidence 5689999999999999999854 555555555543
No 356
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.38 E-value=0.00086 Score=55.63 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++.+++.+
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999876
No 357
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.37 E-value=0.0021 Score=54.18 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=21.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.|.||+|+||||+++.+++.+.
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999773
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.35 E-value=0.002 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=20.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+.|.|++|+||||+++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4899999999999999999984
No 359
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.35 E-value=0.051 Score=42.22 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=19.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||++..+...
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998764
No 360
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.35 E-value=0.038 Score=46.05 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.+++|+||+|.+... ....+.+++...+.+..+++.+....
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWP 209 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCC
Confidence 45689999999976432 23455556666555667777665544
No 361
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.35 E-value=0.02 Score=47.54 Aligned_cols=51 Identities=8% Similarity=0.151 Sum_probs=30.6
Q ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCcccHHHhh
Q 018543 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 179 (354)
...+++|+||+|.+... ....+..++...+....+++.|.....-...+.+
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 200 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLK 200 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHH
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHH
Confidence 35689999999977432 2344556666655566666666555543333333
No 362
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.34 E-value=0.0017 Score=54.97 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=21.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPG 62 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~ 62 (354)
++++||||+||||++..++..+...+
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~~ 51 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKMG 51 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 89999999999999988877654433
No 363
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.34 E-value=0.0096 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=19.7
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||++..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999998763
No 364
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.34 E-value=0.0018 Score=58.09 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
.+++.+ --+..|.. +.|.||+|+||||+++.+++. ..++.+.+.+.+
T Consensus 60 ~ald~l-l~i~~Gq~--~gIiG~nGaGKTTLl~~I~g~-~~~~~g~i~~~G 106 (347)
T 2obl_A 60 RAIDGL-LTCGIGQR--IGIFAGSGVGKSTLLGMICNG-ASADIIVLALIG 106 (347)
T ss_dssp HHHHHH-SCEETTCE--EEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEES
T ss_pred EEEEee-eeecCCCE--EEEECCCCCCHHHHHHHHhcC-CCCCEEEEEEec
Confidence 445544 44444544 999999999999999999995 445544444433
No 365
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.33 E-value=0.0022 Score=56.73 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=21.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.|.||+|+||||+++.+++.+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 88999999999999999998653
No 366
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.33 E-value=0.0032 Score=51.98 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=26.9
Q ss_pred CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC
Q 018543 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (354)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 169 (354)
+..+|+|||++.++++..+.+.++.+ .+.++|+..-+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~GLd 137 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAGLD 137 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEEES
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEeecc
Confidence 55799999999999887777766663 34566665443
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.31 E-value=0.0027 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|+|++|+||||+++.++..+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999864
No 368
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.31 E-value=0.0012 Score=59.07 Aligned_cols=34 Identities=35% Similarity=0.357 Sum_probs=25.7
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 70 (354)
.+.|.||||+||||+++++++.+ .+..+.+.+.+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~~ 90 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVLA 90 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEEE
Confidence 38999999999999999999855 33344444443
No 369
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0012 Score=61.55 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=26.8
Q ss_pred HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc
Q 018543 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE 64 (354)
Q Consensus 25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 64 (354)
+...+..|.. +.|.||+|+||||+++.+++. ..+..+
T Consensus 131 vsl~i~~Ge~--v~IvGpnGsGKSTLlr~L~Gl-~~p~~G 167 (460)
T 2npi_A 131 IRMSNFEGPR--VVIVGGSQTGKTSLSRTLCSY-ALKFNA 167 (460)
T ss_dssp HHHHSSSCCC--EEEEESTTSSHHHHHHHHHHT-THHHHC
T ss_pred CceEeCCCCE--EEEECCCCCCHHHHHHHHhCc-ccccCC
Confidence 3334444544 999999999999999999984 333334
No 370
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.27 E-value=0.014 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=17.9
Q ss_pred CeEEEeCCCCCcHHHHH-HHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLI-MALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla-~~la~~l 58 (354)
.++++.||.|+|||..+ ..+...+
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~ 27 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREA 27 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35999999999999975 4444333
No 371
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.27 E-value=0.038 Score=50.32 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCcCC--HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.++||+||+|.+. ......+..++...+.+..+|+.+..+.
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 211 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 211 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecC
Confidence 456899999999763 2333444555555556677777766654
No 372
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.26 E-value=0.0038 Score=58.80 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHh--cCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 18 HQDIAQNLKKLVT--EQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 18 ~~~~~~~l~~~l~--~~~~~~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.+++.+.++.... ......++|.|++|+||||+++++++.+.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4566667766652 22223499999999999999999999884
No 373
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.25 E-value=0.027 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
+++.|++|+||||++-.+|..+...
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 8899999999999999999877543
No 374
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=96.25 E-value=0.0035 Score=50.86 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543 272 RLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG 347 (354)
Q Consensus 272 ~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~ 347 (354)
.+++....+|++++ +|.|+ .|++..+++.+|..||..|++|+. ||+|++.++|+
T Consensus 27 ~yDk~Gd~HYd~IS--------------Af~KS----iRGSDpDAALywLaRMl~~GEDp~----~IaRRLvi~As 80 (213)
T 3ctd_A 27 VYDKNGQNHFDVIS--------------AFIKS----IRGSDPDATLYWLANMVEAGEDPN----FIFRRLLISAC 80 (213)
T ss_dssp -------CHHHHHH--------------HHHHH----HHTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHH
T ss_pred ccCCCchHHHHHHH--------------HHHHH----HhcCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHH
Confidence 34555566776554 67887 889999999999999999999985 99999999986
No 375
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.24 E-value=0.044 Score=51.58 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=21.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++|.|++|+||||++..+|..+.
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 376
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.24 E-value=0.0035 Score=50.33 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 34 CPHLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 34 ~~~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.+.+.|.||+|+||||+++.++..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 34589999999999999999998753
No 377
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.24 E-value=0.00078 Score=54.02 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=24.8
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhcCCC--Cccccccc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVEN 70 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~ 70 (354)
.+.|.||+|+||||+++.+++.+...+ .+.+.+++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 478999999999999999998653221 34444444
No 378
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.23 E-value=0.027 Score=43.73 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.8
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999764
No 379
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.22 E-value=0.0018 Score=53.49 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+.+.||+|+||||+++.+++.
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999874
No 380
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.21 E-value=0.0014 Score=60.14 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHH
Q 018543 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+.+...+..|..+++.|.||+|+||||+++++++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 566777777787777999999999999999999874
No 381
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.019 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+++.|++|+||||+++.+.+.-
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 9999999999999999998754
No 382
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.17 E-value=0.013 Score=45.73 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+...
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998764
No 383
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.16 E-value=0.037 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.+.||+|+||||++..+|..+.
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88899999999999999998764
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.16 E-value=0.0033 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.+|+||+|+||||+++++...+.
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 78999999999999999987553
No 385
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.14 E-value=0.13 Score=43.45 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.7
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
++|.|++|+||||++..+.+
T Consensus 24 I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 99999999999999998865
No 386
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.14 E-value=0.009 Score=55.03 Aligned_cols=34 Identities=18% Similarity=0.046 Sum_probs=24.6
Q ss_pred ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEec
Q 018543 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN 168 (354)
Q Consensus 131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 168 (354)
.+++||||+..++......++..+. . ..+|++..
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~---~-~~vilvGD 268 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL---C-DIAYVYGD 268 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT---C-SEEEEEEC
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC---C-CEEEEecC
Confidence 5899999999999887777766542 2 55666544
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.13 E-value=0.003 Score=52.59 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=19.5
Q ss_pred eEEEeCCCCCcHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~ 56 (354)
.+.|.|++|+||||+++.++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999987
No 388
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.13 E-value=0.058 Score=49.00 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=26.4
Q ss_pred CCceEEEEeCCCcCC-HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.+++|+||+|.+. ......+..++...+....+++.|....
T Consensus 162 ~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~ 205 (400)
T 1s2m_A 162 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP 205 (400)
T ss_dssp TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCC
Confidence 456899999999664 4444445555555444556666555443
No 389
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.13 E-value=0.024 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.9
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||+++.+...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3999999999999999999764
No 390
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.12 E-value=0.0022 Score=56.98 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=29.8
Q ss_pred CCeEEEeCCCCCcHHHHHHHHHHHhc-------CCCCcccccccccc
Q 018543 34 CPHLLFYGPPGSGKKTLIMALLRQVF-------GPGAEKVKVENKTW 73 (354)
Q Consensus 34 ~~~~ll~Gp~G~GKTtla~~la~~l~-------~~~~~~~~~~~~~~ 73 (354)
++-++|+|++|+||||+++.+++... .++.+.+.+++...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 45589999999999999999987431 34566666666543
No 391
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.09 E-value=0.22 Score=43.53 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.4
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+.+.|.||+||||++..+.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999998753
No 392
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.08 E-value=0.014 Score=53.65 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
+.+.||+|+||||++..+|..+...
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8889999999999999999976543
No 393
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.07 E-value=0.025 Score=52.99 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=29.9
Q ss_pred CCceEEEEeCCCcCC--HHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 129 ~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
.+.++|||||+|.+. ......+..++...+.+..+|+.+..+..
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH
Confidence 466899999999763 23444555556555666778887777654
No 394
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.05 E-value=0.0064 Score=53.49 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=23.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV 68 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (354)
+.|.||+|+||||++++++ +..+..+.+..
T Consensus 168 ~~l~G~sG~GKSTLln~l~--~~~~~~G~i~~ 197 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT--GEELRTQEVSE 197 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH--SCCCCCSCC--
T ss_pred EEEECCCCCCHHHHHHHHH--HhhCccccccc
Confidence 8899999999999999998 55566565554
No 395
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.04 E-value=0.005 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.|.|++|+||||+++.+++.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999866
No 396
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.03 E-value=0.022 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.7
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||++..+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999998764
No 397
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.01 E-value=0.049 Score=51.45 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.....+..+++. ...+++||.|+|||..+-.++....
T Consensus 116 ~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 116 WYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYL 153 (510)
T ss_dssp HHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 3344444444443 3589999999999999877766543
No 398
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.01 E-value=0.067 Score=48.33 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=29.3
Q ss_pred CCceEEEEeCCCcCCH--HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
...++||+||+|.+.. .....+..++...+....+++.|..+.
T Consensus 151 ~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 195 (391)
T 1xti_A 151 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS 195 (391)
T ss_dssp TTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCC
T ss_pred cccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCC
Confidence 4668999999998753 455566666666555666676666554
No 399
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.00 E-value=0.0035 Score=54.48 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++|+||||+||||+++.++..+.
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998653
No 400
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.99 E-value=0.0068 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.5
Q ss_pred eEEEeCCCCCcHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~ 56 (354)
.+++.|++|+||||+++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999998753
No 401
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.98 E-value=0.0039 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=21.3
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.||+|+||||+++.++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 38999999999999999999976
No 402
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.97 E-value=0.025 Score=47.74 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=28.4
Q ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.+++|+||+|.+... ....+..++...+.+..+++.+....
T Consensus 175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~ 218 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 218 (242)
T ss_dssp TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecC
Confidence 45689999999976542 34455566666556666777665554
No 403
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.97 E-value=0.016 Score=46.61 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||++..++..
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999999864
No 404
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.97 E-value=0.0044 Score=59.14 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 19 QDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 19 ~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.++.+.++..... .+...+.|.|++|+||||+++++++.+.
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 4555555543311 1112389999999999999999999764
No 405
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.96 E-value=0.0029 Score=51.58 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||+|+|||+++..+++..
T Consensus 37 ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998753
No 406
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.93 E-value=0.005 Score=48.02 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
.+|+||+|+|||+++.++.-.+.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 799999999999999999876644
No 407
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.92 E-value=0.0043 Score=50.70 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.+.||+|+||||+++.+++..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998743
No 408
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.92 E-value=0.019 Score=45.82 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+...
T Consensus 21 i~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 999999999999999998764
No 409
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.025 Score=45.37 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.4
Q ss_pred CCCeEEEeCCCCCcHHHHHHHHHH
Q 018543 33 DCPHLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 33 ~~~~~ll~Gp~G~GKTtla~~la~ 56 (354)
+...+++.|++|+||||+++.+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 334599999999999999998874
No 410
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.01 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.1
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||++..+...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 411
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.89 E-value=0.043 Score=51.89 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=28.8
Q ss_pred CCceEEEEeCCCcCCH--HHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543 129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK 172 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 172 (354)
...++||+||+|.+.. .....+..++...+....+|+.|..+..
T Consensus 258 ~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~ 303 (508)
T 3fho_A 258 RDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSE 303 (508)
T ss_dssp TTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCST
T ss_pred cCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCH
Confidence 4568999999997753 3334455555555556777777766653
No 412
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.89 E-value=0.004 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||+++.+++..
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 413
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.85 E-value=0.0043 Score=56.17 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPG 62 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~ 62 (354)
+.|.||+|+||||+++.+++. +.+.
T Consensus 173 ~~IvG~nGsGKSTLlk~L~gl-~~~~ 197 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAAV-FNTT 197 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHHH-TTCE
T ss_pred EEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 899999999999999999985 4443
No 414
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.84 E-value=0.0036 Score=55.10 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=21.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCCCccccc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV 68 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (354)
+.|.||+|+||||++++++. +..+..+.+.+
T Consensus 172 v~l~G~sG~GKSTll~~l~g-~~~~~~G~i~~ 202 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAINP-GLKLRVSEVSE 202 (301)
T ss_dssp EEEECSTTSSHHHHHHHHST-TCCCC------
T ss_pred EEEECCCCCcHHHHHHHhcc-cccccccceec
Confidence 88999999999999999987 44555554443
No 415
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.83 E-value=0.0054 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.4
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHH
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~ 57 (354)
+.+++.|++|+||||++..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999764
No 416
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.83 E-value=0.1 Score=43.08 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.3
Q ss_pred CCCeEEEeCCCCCcHHHHHHHHHH
Q 018543 33 DCPHLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 33 ~~~~~ll~Gp~G~GKTtla~~la~ 56 (354)
..+.+++.|++|+||||++..+.+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 344599999999999999998765
No 417
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.81 E-value=0.051 Score=50.39 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.....+..+++ + ++++.+|.|+|||..+-.++...
T Consensus 12 ~~Q~~~i~~~~~-~---~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 12 IYQEVIYAKCKE-T---NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp HHHHHHHHHGGG-S---CEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-C---CEEEEcCCCCCHHHHHHHHHHHH
Confidence 333444444444 3 69999999999999888776654
No 418
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.80 E-value=0.0034 Score=55.74 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.3
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.++|.||+|+|||+++..+|+.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 48999999999999999999876
No 419
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.79 E-value=0.0059 Score=50.75 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
+.|.||+|+||||.++.++..+..
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999998743
No 420
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.78 E-value=0.2 Score=46.33 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.9
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+.|.|+||+||||+++.+++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
No 421
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.78 E-value=0.081 Score=46.49 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+.+.|+||+||||++..+.+.
T Consensus 13 v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 899999999999999988653
No 422
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.78 E-value=0.0056 Score=50.89 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|+|++|+||||+++.+++.+
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999865
No 423
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.77 E-value=0.0062 Score=51.07 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||||+||||.++.+++.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999876
No 424
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.77 E-value=0.047 Score=43.56 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||++..+.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999764
No 425
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.76 E-value=0.046 Score=43.32 Aligned_cols=21 Identities=29% Similarity=0.757 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+...
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999998764
No 426
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.75 E-value=0.0044 Score=55.13 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++|+||||+|||+++..++....
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHhHHHHHHHHHHh
Confidence 89999999999999999987653
No 427
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.74 E-value=0.005 Score=53.57 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=19.0
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
+.|+|++|+||||+++.++.
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999994
No 428
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.74 E-value=0.032 Score=45.55 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+...
T Consensus 32 i~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhhC
Confidence 999999999999999998764
No 429
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.72 E-value=0.0082 Score=57.64 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++|+|++|+||||+++.+++.+.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 430
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.70 E-value=0.024 Score=46.11 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=19.0
Q ss_pred eEEEeCCCCCcHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~ 56 (354)
.+++.|++|+||||++..+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999998865
No 431
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.70 E-value=0.035 Score=44.58 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.7
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||++..+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3999999999999999998763
No 432
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.67 E-value=0.11 Score=54.28 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHH
Q 018543 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~ 57 (354)
|..++..+...+.+|+..+.+++||.|+|||..+...+-.
T Consensus 608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~ 647 (1151)
T 2eyq_A 608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 647 (1151)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHH
Confidence 4555555555555676557999999999999887655433
No 433
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.67 E-value=0.0081 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.8
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.+.|.|++|+||||.++.+++.+.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999999873
No 434
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.67 E-value=0.086 Score=47.38 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.1
Q ss_pred eEEEeCCCCCcHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~ 56 (354)
.+++.|+||+||||++..+++
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 499999999999999998865
No 435
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.65 E-value=0.014 Score=56.91 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
++.....+...+. .+..++.||||||||+++..++..+..
T Consensus 182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 4555566665553 245899999999999998888877654
No 436
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.65 E-value=0.066 Score=45.10 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=26.8
Q ss_pred CCceEEEEeCCCcCCH----HHHHHHHHHHhhc-cCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKY-SASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~----~~~~~Ll~~le~~-~~~~~~Il~~~~~~ 171 (354)
.+.+++|+||+|.+.. .....+..++... +....+++.+....
T Consensus 174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~ 221 (245)
T 3dkp_A 174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFA 221 (245)
T ss_dssp TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCC
T ss_pred ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCC
Confidence 4568999999998754 3455566666443 23455566555544
No 437
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.64 E-value=0.0065 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.|.||+|+||||.++.++..+.
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998773
No 438
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.62 E-value=0.013 Score=52.73 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=24.3
Q ss_pred CCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543 32 QDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (354)
Q Consensus 32 ~~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 61 (354)
++.+.+.|+|+||+||||++..++..+...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 333449999999999999999999876543
No 439
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.61 E-value=0.0052 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.||+|+||||.++.+++.+
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999877
No 440
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.60 E-value=0.0063 Score=48.36 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
++|.|++|+||||++..+..
T Consensus 19 vli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 441
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.54 E-value=0.036 Score=53.75 Aligned_cols=42 Identities=7% Similarity=0.119 Sum_probs=25.6
Q ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHhhcc-CceeEEEEecCC
Q 018543 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASCRLILCCNSS 170 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~ 170 (354)
.+.++|||||+|.++......+..+++..+ ....+|+.|..+
T Consensus 276 ~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~ 318 (618)
T 2whx_A 276 PNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATP 318 (618)
T ss_dssp CCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred cCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCC
Confidence 456899999999997665444433333321 345566655444
No 442
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.53 E-value=0.013 Score=55.99 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhc-CCCC-eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 19 QDIAQNLKKLVTE-QDCP-HLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 19 ~~~~~~l~~~l~~-~~~~-~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+++.+.++..... ++.+ .++|+|++|+||||+++.+++.+.
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 5566666666521 2223 389999999999999999998764
No 443
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.53 E-value=0.0046 Score=54.06 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=18.0
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
-+.+.||+|+||||+++.++..+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999999865
No 444
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.52 E-value=0.099 Score=47.12 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.0
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHH
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~ 57 (354)
+.+.|.|++|+||||+++.+++.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 34889999999999999998763
No 445
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.46 E-value=0.0075 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|.|++|+||||+++.+++.+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999876
No 446
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.43 E-value=0.0083 Score=47.34 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=18.8
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
+.+.|++|+||||+++.+++
T Consensus 6 v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999875
No 447
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.017 Score=46.73 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||+++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999865
No 448
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.37 E-value=0.0074 Score=48.58 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=18.6
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
+++.|++|+||||+++.+++
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999998875
No 449
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.36 E-value=0.013 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+...
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999998764
No 450
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.36 E-value=0.01 Score=48.87 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
.+|+||+|+||||++.++.-.+.+
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999876654
No 451
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.32 E-value=0.0087 Score=49.13 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHH
Q 018543 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 17 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~ 57 (354)
++++..+.+.......+.-.+++.|++|+||||++..+...
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34444555554444443334999999999999999988763
No 452
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.32 E-value=0.023 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.4
Q ss_pred CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.+.|.|+||+||||++.++++.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999865
No 453
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.31 E-value=0.053 Score=54.75 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=32.2
Q ss_pred CceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCC
Q 018543 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS 171 (354)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 171 (354)
+++++|+||+ ..|+......+++.|.+.. .+..+|+++++.+
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~ 869 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3589999998 7899999999888886653 3456777777653
No 454
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.31 E-value=0.0099 Score=49.36 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+.|.|++|+||||.++.++..+.
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999873
No 455
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.30 E-value=0.0098 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.9
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.+.|.|++|+||||.++.++..+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 389999999999999999999873
No 456
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.29 E-value=0.041 Score=45.69 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=19.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|.+|+|||+++..+...
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 899999999999999988754
No 457
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.29 E-value=0.01 Score=56.39 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++++|.||+||||+++.+++.+.
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998773
No 458
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.26 E-value=0.012 Score=53.12 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=23.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFGPG 62 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~~~ 62 (354)
.+|+||+|+||||+..+++-.+++..
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al~g~~ 51 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFALFGNG 51 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc
Confidence 78999999999999999998877654
No 459
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.26 E-value=0.078 Score=52.31 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=27.0
Q ss_pred CCceEEEEeCCCcCC----HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLS----REAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~----~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.++||+||+|.+. ....+.++..+........+|+.|....
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~ 183 (702)
T 2p6r_A 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP 183 (702)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT
T ss_pred hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC
Confidence 456899999999863 2334445555544344567777666554
No 460
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.25 E-value=0.044 Score=44.27 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999988643
No 461
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.25 E-value=0.021 Score=57.04 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
++.....+...+. .+..++.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHT---SSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcc---CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4555555655553 245899999999999998888877764
No 462
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.25 E-value=0.011 Score=46.35 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.9
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||++..+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 463
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.25 E-value=0.0039 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.9
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l 58 (354)
.+.|.|++|+||||+++.+++.+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999998765
No 464
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.23 E-value=0.0098 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|.||+|+|||+++..+|..+
T Consensus 5 i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHHC
Confidence 8899999999999999999876
No 465
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.22 E-value=0.027 Score=55.72 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=16.7
Q ss_pred CeEEEeCCCCCcHHHHHHHH
Q 018543 35 PHLLFYGPPGSGKKTLIMAL 54 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla~~l 54 (354)
.++++.||+|+|||+.+-..
T Consensus 47 ~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHH
Confidence 34999999999999988443
No 466
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.21 E-value=0.039 Score=51.53 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=20.3
Q ss_pred HHHhcCCCCeEEEeCCCCCcHHHH-HHHHHHHh
Q 018543 27 KLVTEQDCPHLLFYGPPGSGKKTL-IMALLRQV 58 (354)
Q Consensus 27 ~~l~~~~~~~~ll~Gp~G~GKTtl-a~~la~~l 58 (354)
.++.++ .++++.||+|+|||+. +..+...+
T Consensus 16 ~~l~~~--~~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 16 NMLRKR--QMTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp GGGSTT--CEEEECCCTTSCTTTTHHHHHHHHH
T ss_pred HHHhcC--CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444 3499999999999996 44444434
No 467
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.19 E-value=0.014 Score=46.40 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.5
Q ss_pred CCeEEEeCCCCCcHHHHHHHHHHH
Q 018543 34 CPHLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 34 ~~~~ll~Gp~G~GKTtla~~la~~ 57 (354)
...+++.|++|+||||++..+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999998753
No 468
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.16 E-value=0.019 Score=50.72 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~~ 60 (354)
+++.|+||+|||+++..+|.....
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999876543
No 469
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.12 E-value=0.01 Score=47.72 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=18.9
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
+++.|++|+||||+++.+++
T Consensus 10 i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999875
No 470
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.10 E-value=0.059 Score=49.13 Aligned_cols=43 Identities=16% Similarity=0.347 Sum_probs=29.4
Q ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
...++||+||+|.+... ....+..++...+.+..+|+.|..+.
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 34689999999976432 33456666666666777777776654
No 471
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.10 E-value=0.013 Score=45.98 Aligned_cols=21 Identities=19% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||++..+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998764
No 472
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.09 E-value=0.01 Score=47.21 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
++|.|++|+||||+++.+++.
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999763
No 473
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.08 E-value=0.11 Score=47.26 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=28.6
Q ss_pred CCceEEEEeCCCcCC-HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
...++||+||+|.+. ......+..++...+....+++.|..+.
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 221 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 221 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCC
Confidence 456899999999764 3334556666666556667777666554
No 474
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.08 E-value=0.017 Score=52.76 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCCeEEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62 (354)
Q Consensus 33 ~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 62 (354)
..+|+++.||+|+|||++++.++..+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~ 63 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG 63 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 456799999999999999999998775443
No 475
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.05 E-value=0.0064 Score=51.11 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+.|.||+|+||||+++.+++.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 889999999999999998873
No 476
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.04 E-value=0.014 Score=45.86 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999998764
No 477
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.03 E-value=0.039 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=18.3
Q ss_pred CeEEEeCCCCCcHHHHH-HHHHHHh
Q 018543 35 PHLLFYGPPGSGKKTLI-MALLRQV 58 (354)
Q Consensus 35 ~~~ll~Gp~G~GKTtla-~~la~~l 58 (354)
.+++++||.|+|||+.+ ..+...+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHH
Confidence 45999999999999987 3444434
No 478
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.02 E-value=0.08 Score=49.24 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=23.1
Q ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHhh--ccCceeEEEEecCC
Q 018543 129 RGFKVLVLNEVDKLSREAQHSLRRTMEK--YSASCRLILCCNSS 170 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~--~~~~~~~Il~~~~~ 170 (354)
.+.++|||||+|.++..... ++..+.. ...+..+|+.|..+
T Consensus 109 ~~~~~iViDEah~~~~~~~~-~~~~~~~~~~~~~~~~i~~SAT~ 151 (451)
T 2jlq_A 109 PNYNLIVMDEAHFTDPCSVA-ARGYISTRVEMGEAAAIFMTATP 151 (451)
T ss_dssp CCCSEEEEETTTCCSHHHHH-HHHHHHHHHHTTSCEEEEECSSC
T ss_pred cCCCEEEEeCCccCCcchHH-HHHHHHHhhcCCCceEEEEccCC
Confidence 45689999999988654332 2222221 22345555555443
No 479
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.01 E-value=0.013 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
++++|+||+|||+++..++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999887654
No 480
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.99 E-value=0.012 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
++|+||||+|||+++..++...
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998753
No 481
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.98 E-value=0.064 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.3
Q ss_pred eEEEeCCCCCcHHHHH-HHHHHHh
Q 018543 36 HLLFYGPPGSGKKTLI-MALLRQV 58 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla-~~la~~l 58 (354)
++++.||.|+|||..+ ..+...+
T Consensus 10 ~vlv~a~TGSGKT~~~l~~~l~~~ 33 (440)
T 1yks_A 10 TTVLDFHPGAGKTRRFLPQILAEC 33 (440)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4999999999999974 4444433
No 482
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.98 E-value=0.015 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||++..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999998764
No 483
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.97 E-value=0.035 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=4.2
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999988764
No 484
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.97 E-value=0.013 Score=52.64 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+.|.||+|+||||++++++..
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcc
Confidence 899999999999999999863
No 485
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.96 E-value=0.015 Score=45.50 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999763
No 486
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.96 E-value=0.028 Score=46.54 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=17.9
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
+++.|++|+||||+++.+..
T Consensus 18 i~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999998443
No 487
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.96 E-value=0.012 Score=54.37 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.6
Q ss_pred eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
.++|.|++|+||||++..+|..+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 399999999999999999998763
No 488
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.93 E-value=0.013 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=19.6
Q ss_pred eEEEeCCCCCcHHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~~ 57 (354)
.+++.|++|+||||++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999998753
No 489
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.90 E-value=0.018 Score=46.01 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+...
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998753
No 490
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.90 E-value=0.015 Score=56.17 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++|+|++|+||||+++.+++.+.
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999874
No 491
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.89 E-value=0.015 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.7
Q ss_pred eEEEeCCCCCcHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~ 56 (354)
.+++.|++|+||||+++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999998863
No 492
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.88 E-value=0.016 Score=45.41 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||++..+...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998763
No 493
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.013 Score=45.98 Aligned_cols=21 Identities=24% Similarity=0.706 Sum_probs=19.0
Q ss_pred eEEEeCCCCCcHHHHHHHHHH
Q 018543 36 HLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 36 ~~ll~Gp~G~GKTtla~~la~ 56 (354)
.+++.|++|+||||+++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999998875
No 494
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.88 E-value=0.079 Score=46.65 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCC
Q 018543 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS 171 (354)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~ 171 (354)
.+.+++|+||+|.+... ....+...+...+....+++.+..+.
T Consensus 128 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~ 171 (337)
T 2z0m_A 128 SSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIP 171 (337)
T ss_dssp GGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred hhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCC
Confidence 45689999999977432 23344555555555566666555543
No 495
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.87 E-value=0.014 Score=47.26 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.6
Q ss_pred CCCeEEEeCCCCCcHHHHHHHHHH
Q 018543 33 DCPHLLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 33 ~~~~~ll~Gp~G~GKTtla~~la~ 56 (354)
....+++.|++|+||||++..+.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344599999999999999999865
No 496
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.03 Score=55.99 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
++.....+...+. .+..++.||||||||+++..++..+.
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l~ 400 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHLS 400 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHHH
Confidence 4555555655553 24589999999999998877766553
No 497
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.84 E-value=0.016 Score=54.31 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhc
Q 018543 37 LLFYGPPGSGKKTLIMALLRQVF 59 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l~ 59 (354)
+++.|.||+||||+++.+++.+.
T Consensus 42 IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998774
No 498
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.83 E-value=0.019 Score=47.35 Aligned_cols=22 Identities=41% Similarity=0.758 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 018543 37 LLFYGPPGSGKKTLIMALLRQV 58 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~l 58 (354)
+.|-|+.|+||||.++.++..+
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999977
No 499
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.83 E-value=0.014 Score=46.86 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=18.4
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLR 56 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~ 56 (354)
++++|++|+|||++|..++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 68999999999999998875
No 500
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.82 E-value=0.017 Score=46.50 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 018543 37 LLFYGPPGSGKKTLIMALLRQ 57 (354)
Q Consensus 37 ~ll~Gp~G~GKTtla~~la~~ 57 (354)
+++.|++|+||||+++.+...
T Consensus 14 i~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999999763
Done!