Query 018549
Match_columns 354
No_of_seqs 324 out of 1541
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:00:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1E-27 3.5E-32 205.2 15.2 111 160-283 8-118 (130)
2 1gcc_A Ethylene responsive ele 99.8 3E-21 1E-25 145.6 6.0 58 44-101 2-62 (63)
3 4i1k_A B3 domain-containing tr 99.6 2.1E-15 7.2E-20 131.2 12.4 87 163-266 46-132 (146)
4 1yel_A AT1G16640; CESG, protei 99.5 2.8E-13 9.5E-18 110.9 9.9 85 163-265 8-92 (104)
5 1na6_A Ecorii, restriction end 95.0 0.022 7.4E-07 56.4 5.0 93 163-262 18-123 (404)
6 3igm_B PF14_0633 protein; AP2 89.1 0.29 1E-05 37.5 3.3 28 41-68 4-32 (77)
7 1u3e_M HNH homing endonuclease 76.8 0.39 1.3E-05 41.7 -0.7 37 46-83 110-146 (174)
8 1z1b_A Integrase; protein-DNA 66.5 4.7 0.00016 37.2 4.1 42 47-90 15-56 (356)
9 3jtz_A Integrase; four strande 40.9 80 0.0027 24.1 6.7 42 49-90 29-76 (88)
10 3m7a_A Uncharacterized protein 40.3 55 0.0019 27.5 6.1 49 208-259 81-140 (140)
11 2ftc_I Mitochondrial ribosomal 34.2 50 0.0017 26.9 4.7 37 55-91 79-115 (118)
12 3u5c_V S26, YS25, 40S ribosoma 29.0 64 0.0022 25.1 4.2 58 172-250 2-63 (87)
13 2k75_A Uncharacterized protein 26.7 87 0.003 24.5 4.9 30 212-261 41-70 (106)
14 3pjy_A Hypothetical signal pep 26.7 2.3E+02 0.0077 23.4 7.6 49 208-259 67-126 (136)
15 3ju0_A Phage integrase; four s 25.3 1.6E+02 0.0054 23.3 6.2 42 49-90 29-76 (108)
16 1oa8_A Ataxin-1; RNA binding, 23.1 47 0.0016 27.9 2.7 30 232-261 87-126 (133)
17 2xzm_Z RPS21E; ribosome, trans 20.9 1.2E+02 0.004 24.1 4.4 40 171-221 16-59 (97)
18 2z0t_A Putative uncharacterize 20.7 91 0.0031 25.1 3.8 29 247-283 30-58 (109)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=1e-27 Score=205.16 Aligned_cols=111 Identities=50% Similarity=0.773 Sum_probs=100.1
Q ss_pred ccccceeeeeccccccCCCCceeechhhhhhcCCCCchhhhhhccccCCCCeEEEEEeCCCceEEEEEEEeCCCCeeeEc
Q 018549 160 MMCRQLFQKELTPSDVGKLNRLVIPKKYAVKYFPQISERVEEHAENDKADDVQLVFHDKSMKLWKFRYCYWKSSQSFVFT 239 (354)
Q Consensus 160 ~~~~~lF~K~LT~SDv~~~~rL~IPk~~a~~~fP~l~~~~~~~~~~~~~~gv~v~v~D~~g~~W~fr~~~~~~sr~yvLt 239 (354)
..+.++|.|+||+|||++++||+||+.+|++|||.++. .+..+++.|.++|.+|+.|+|+|+||+++++|+|+
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~-------~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt 80 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSS-------NVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLT 80 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSS-------CCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEE
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCcccc-------ccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEc
Confidence 35578999999999999899999999999999999983 22468899999999999999999999999999999
Q ss_pred cChHHHHhhcCCCCCCEEEEEEeecCCccccceeEEEEEeeecC
Q 018549 240 RGWNRFVKENQLKANDTICFYLCELRDIAKGTKTFGMIDAKKGE 283 (354)
Q Consensus 240 ~GW~~FVr~k~Lk~GD~I~F~r~~~g~~~~~~~~~~~i~~~~~~ 283 (354)
+||..||++|+|++||+|+|+++.+++. +++|++++..
T Consensus 81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~------~l~I~~rr~~ 118 (130)
T 1wid_A 81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQ------QLYIGWKSRS 118 (130)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEECCSSSC------CEEEEEECCC
T ss_pred CChHHHHHHcCCCCCCEEEEEEecCCCc------EEEEEEEECC
Confidence 9999999999999999999999885543 4899999986
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.83 E-value=3e-21 Score=145.59 Aligned_cols=58 Identities=45% Similarity=0.829 Sum_probs=55.1
Q ss_pred ceEEeEECCCCeEEEEEEe---CCeEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 018549 44 KFKGVVPQQNGHWGAQIYA---NHQRIWLGTFKSEKDAAMAYDSAAIRLRGVDSHRNFPWT 101 (354)
Q Consensus 44 gyrGV~~~~~gkw~A~I~~---~~k~~~LG~f~t~EeAa~Ayd~aa~~~~g~~a~~NFp~~ 101 (354)
+|+||+++++|||+|+|++ +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999998889999999999 589999999999999999999999999999999999964
No 3
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.63 E-value=2.1e-15 Score=131.25 Aligned_cols=87 Identities=30% Similarity=0.454 Sum_probs=76.7
Q ss_pred cceeeeeccccccCCCCceeechhhhhhcCCCCchhhhhhccccCCCCeEEEEEeCCCceEEEEEEEeCCCCeeeEccCh
Q 018549 163 RQLFQKELTPSDVGKLNRLVIPKKYAVKYFPQISERVEEHAENDKADDVQLVFHDKSMKLWKFRYCYWKSSQSFVFTRGW 242 (354)
Q Consensus 163 ~~lF~K~LT~SDv~~~~rL~IPk~~a~~~fP~l~~~~~~~~~~~~~~gv~v~v~D~~g~~W~fr~~~~~~sr~yvLt~GW 242 (354)
.+.|.|+||+|||....+|.||+.++.+|||..+ ..+.+.|. |+.|.++++|++. +++|++||
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~--------------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW 108 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS--------------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGW 108 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC--------------SEEEEEET-TEEEEEEEEEETT--EEEECTTH
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC--------------eEEEEEEC-CcEEEEEEEEeCC--cEEECCch
Confidence 5689999999999887789999999999999764 25667777 5999999999864 68999999
Q ss_pred HHHHhhcCCCCCCEEEEEEeecCC
Q 018549 243 NRFVKENQLKANDTICFYLCELRD 266 (354)
Q Consensus 243 ~~FVr~k~Lk~GD~I~F~r~~~g~ 266 (354)
..||++++|++||+|+|-...+.+
T Consensus 109 ~~Fv~dn~L~~GD~cvFeli~~~~ 132 (146)
T 4i1k_A 109 YEFTLENNLGEGDVCVFELLRTRD 132 (146)
T ss_dssp HHHHHHTTCCTTCEEEEEECSSSS
T ss_pred HHHHHHcCCCCCCEEEEEEecCCc
Confidence 999999999999999999987654
No 4
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.45 E-value=2.8e-13 Score=110.87 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=71.8
Q ss_pred cceeeeeccccccCCCCceeechhhhhhcCCCCchhhhhhccccCCCCeEEEEEeCCCceEEEEEEEeCCCCeeeEccCh
Q 018549 163 RQLFQKELTPSDVGKLNRLVIPKKYAVKYFPQISERVEEHAENDKADDVQLVFHDKSMKLWKFRYCYWKSSQSFVFTRGW 242 (354)
Q Consensus 163 ~~lF~K~LT~SDv~~~~rL~IPk~~a~~~fP~l~~~~~~~~~~~~~~gv~v~v~D~~g~~W~fr~~~~~~sr~yvLt~GW 242 (354)
.+.|-|+|+++|. ..+|.||+..+..+.|.+. ..+.+.|..|+.|.+++.++. ..++|++||
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~--------------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW 69 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP--------------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGW 69 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC--------------SEEEEEETTSCEEEEEEEEET--TEEEECTTH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccCC--------------CEEEEECCCCCEEEEEEEEEC--CcEEEccCh
Confidence 4689999999994 4699999999987655433 367889999999999999863 578999999
Q ss_pred HHHHhhcCCCCCCEEEEEEeecC
Q 018549 243 NRFVKENQLKANDTICFYLCELR 265 (354)
Q Consensus 243 ~~FVr~k~Lk~GD~I~F~r~~~g 265 (354)
..||++++|++||.|+|....+.
T Consensus 70 ~~Fv~~~~L~~GD~lvF~~~~~~ 92 (104)
T 1yel_A 70 ENFVKDNNLEDGKYLQFIYDRDR 92 (104)
T ss_dssp HHHHHHHTCCTTCEEEEEECSSS
T ss_pred HHHHHHcCCCCCCEEEEEEcCCC
Confidence 99999999999999999986543
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=94.97 E-value=0.022 Score=56.44 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=67.3
Q ss_pred cceeeeeccccccCC----CCceeechhhhhhcCCCCchhhhhhccccCCCCeEEE--EEeCCCceEEEEEEEeC-----
Q 018549 163 RQLFQKELTPSDVGK----LNRLVIPKKYAVKYFPQISERVEEHAENDKADDVQLV--FHDKSMKLWKFRYCYWK----- 231 (354)
Q Consensus 163 ~~lF~K~LT~SDv~~----~~rL~IPk~~a~~~fP~l~~~~~~~~~~~~~~gv~v~--v~D~~g~~W~fr~~~~~----- 231 (354)
...|.|.|++.|++. +.++.+|+..+..+||.|+-.. ..++.+.+. +-|+..-.+.++++|.+
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~------e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~ 91 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTR------ELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFG 91 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCS------SSSCEEEEEEEESSSCCCCEEEEEEEECGGGTT
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCcc------ccCCcceeEEEeccCCCceEEEEEEEecccccC
Confidence 568999999999964 7789999977888999987211 113334443 34454556699999997
Q ss_pred -CCCeeeEccChHH-HHhhcCCCCCCEEEEEEe
Q 018549 232 -SSQSFVFTRGWNR-FVKENQLKANDTICFYLC 262 (354)
Q Consensus 232 -~sr~yvLt~GW~~-FVr~k~Lk~GD~I~F~r~ 262 (354)
....|.|+ .|.. +.=.....+||.++|-+.
T Consensus 92 ~tRnEyRLt-~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 92 KTRNEKRIT-RWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp SCCCEEEEE-CCCTTSGGGCGGGTTCEEEEEEE
T ss_pred CCCCceEEe-ecCCCCcccccCCCCCEEEEEEe
Confidence 23459998 4654 455577899999999986
No 6
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=89.08 E-value=0.29 Score=37.49 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCCceEEeEE-CCCCeEEEEEEeCCeEEE
Q 018549 41 AVSKFKGVVP-QQNGHWGAQIYANHQRIW 68 (354)
Q Consensus 41 ~~SgyrGV~~-~~~gkw~A~I~~~~k~~~ 68 (354)
.+|||.||++ ++.+.|.|.-..+|++..
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~e~g~rrs 32 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFYDGASRRS 32 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEEETTEEEE
T ss_pred CCCCCCcEEeecCCceEEEEEecCCeEee
Confidence 4699999955 568999999998887653
No 7
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=76.81 E-value=0.39 Score=41.74 Aligned_cols=37 Identities=14% Similarity=-0.077 Sum_probs=28.9
Q ss_pred EEeEECCCCeEEEEEEeCCeEEEecCCCCHHHHHHHHH
Q 018549 46 KGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYD 83 (354)
Q Consensus 46 rGV~~~~~gkw~A~I~~~~k~~~LG~f~t~EeAa~Ayd 83 (354)
+||...+.++|.|.|..+ +..+||.|+|.+|||+||.
T Consensus 110 ~g~~~~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 110 KAQQIAKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 455333345699999988 7788999999999999963
No 8
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=66.51 E-value=4.7 Score=37.16 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=32.8
Q ss_pred EeEECCCCeEEEEEEeCCeEEEecCCCCHHHHHHHHHHHHHHhc
Q 018549 47 GVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIRLR 90 (354)
Q Consensus 47 GV~~~~~gkw~A~I~~~~k~~~LG~f~t~EeAa~Ayd~aa~~~~ 90 (354)
||+.++.|.|..+...+||++.+|. |..||..+...+...+.
T Consensus 15 ~v~~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~~ 56 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIELF 56 (356)
T ss_dssp TEEEETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHHh
Confidence 5777778999988777899999996 88888877666555543
No 9
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=40.94 E-value=80 Score=24.11 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=30.1
Q ss_pred EECCCC--eEEEEEEeCCe--EEEecCCC--CHHHHHHHHHHHHHHhc
Q 018549 49 VPQQNG--HWGAQIYANHQ--RIWLGTFK--SEKDAAMAYDSAAIRLR 90 (354)
Q Consensus 49 ~~~~~g--kw~A~I~~~~k--~~~LG~f~--t~EeAa~Ayd~aa~~~~ 90 (354)
+..++| .|.-+.+.+|| ++.||.|. |.++|....+.+...+.
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence 345544 58888888776 57899997 58888877777766554
No 10
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=40.35 E-value=55 Score=27.47 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=32.6
Q ss_pred CCCeEEEEEeCCCceEEEEEEE--eC-------CCCeeeE--ccChHHHHhhcCCCCCCEEEE
Q 018549 208 ADDVQLVFHDKSMKLWKFRYCY--WK-------SSQSFVF--TRGWNRFVKENQLKANDTICF 259 (354)
Q Consensus 208 ~~gv~v~v~D~~g~~W~fr~~~--~~-------~sr~yvL--t~GW~~FVr~k~Lk~GD~I~F 259 (354)
.-.+.+++.|..|+.=.....- |. .+-.||| ..||. .+.++++||.|.|
T Consensus 81 ~~PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 81 VIPLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLA---ARLGIKPGDKVEW 140 (140)
T ss_dssp CSCEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHH---HHHTCCTTCEEEC
T ss_pred CcceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChH---HHcCCCCCCEEeC
Confidence 4557788888888766554311 11 1335888 55664 7889999999874
No 11
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=34.16 E-value=50 Score=26.94 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=32.0
Q ss_pred eEEEEEEeCCeEEEecCCCCHHHHHHHHHHHHHHhcC
Q 018549 55 HWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIRLRG 91 (354)
Q Consensus 55 kw~A~I~~~~k~~~LG~f~t~EeAa~Ayd~aa~~~~g 91 (354)
.|.|.|..+..-+-++...+++.|..|...|+.+|=+
T Consensus 79 ~wva~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 4999999888888888878999999999999988743
No 12
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V
Probab=29.00 E-value=64 Score=25.14 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=35.5
Q ss_pred ccccCCCCceeechhhhhh--cCCCCchhhhhhccccCCCCeEEEE--EeCCCceEEEEEEEeCCCCeeeEccChHHHHh
Q 018549 172 PSDVGKLNRLVIPKKYAVK--YFPQISERVEEHAENDKADDVQLVF--HDKSMKLWKFRYCYWKSSQSFVFTRGWNRFVK 247 (354)
Q Consensus 172 ~SDv~~~~rL~IPk~~a~~--~fP~l~~~~~~~~~~~~~~gv~v~v--~D~~g~~W~fr~~~~~~sr~yvLt~GW~~FVr 247 (354)
+.|.+..=.|.||++|... +++..| ...|++.+ +|..|..- -+....|.|. -|||
T Consensus 2 qNd~g~~VDLYiPRKCSaTNriI~AKD-----------HaSVQIni~~vd~~G~~i------~g~~~tyai~----G~iR 60 (87)
T 3u5c_V 2 ENDKGQLVELYVPRKCSATNRIIKADD-----------HASVQINVAKVDEEGRAI------PGEYVTYALS----GYVR 60 (87)
T ss_dssp CCSSSCCCSSCCCCCCTTTCCCCCTTC-----------TTCEEEEEECCCSSSCCC------SSCEEEEEEC----HHHH
T ss_pred cCcCCcEEEEEccccccccCCceecCC-----------cceEEEeeeeECCcccEe------CCCeeEEEEe----hhhh
Confidence 4566666679999999665 355555 46677776 56666510 2344557775 3666
Q ss_pred hcC
Q 018549 248 ENQ 250 (354)
Q Consensus 248 ~k~ 250 (354)
++|
T Consensus 61 ~~G 63 (87)
T 3u5c_V 61 SRG 63 (87)
T ss_dssp HTT
T ss_pred hCc
Confidence 554
No 13
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=26.74 E-value=87 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=24.4
Q ss_pred EEEEEeCCCceEEEEEEEeCCCCeeeEccChHHHHhhcCCCCCCEEEEEE
Q 018549 212 QLVFHDKSMKLWKFRYCYWKSSQSFVFTRGWNRFVKENQLKANDTICFYL 261 (354)
Q Consensus 212 ~v~v~D~~g~~W~fr~~~~~~sr~yvLt~GW~~FVr~k~Lk~GD~I~F~r 261 (354)
.+.+-|.+| ..+++.|... |++||+|.+.-
T Consensus 41 ~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~n 70 (106)
T 2k75_A 41 QGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDN 70 (106)
T ss_dssp EEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEE
T ss_pred EEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEe
Confidence 567889888 5888899654 99999999874
No 14
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=26.68 E-value=2.3e+02 Score=23.42 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=32.1
Q ss_pred CCCeEEEEEeCCCceEEEEEEE---------eCCCCeeeE--ccChHHHHhhcCCCCCCEEEE
Q 018549 208 ADDVQLVFHDKSMKLWKFRYCY---------WKSSQSFVF--TRGWNRFVKENQLKANDTICF 259 (354)
Q Consensus 208 ~~gv~v~v~D~~g~~W~fr~~~---------~~~sr~yvL--t~GW~~FVr~k~Lk~GD~I~F 259 (354)
.-.+.+.+.|..|+.=.....- ...+-.||| ..||. .+.++++||.|.+
T Consensus 67 ~~PLDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~ 126 (136)
T 3pjy_A 67 YLPLDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGTV---KRLGVSPGDRLEG 126 (136)
T ss_dssp CSCEEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETTHH---HHHTCCTTCEEEE
T ss_pred ccceEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcChH---HhcCCCCCCEEEE
Confidence 3457778888777755542211 112345888 56664 7889999999975
No 15
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=25.31 E-value=1.6e+02 Score=23.34 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=29.6
Q ss_pred EECCCC--eEEEEEEeCCe--EEEecCCC--CHHHHHHHHHHHHHHhc
Q 018549 49 VPQQNG--HWGAQIYANHQ--RIWLGTFK--SEKDAAMAYDSAAIRLR 90 (354)
Q Consensus 49 ~~~~~g--kw~A~I~~~~k--~~~LG~f~--t~EeAa~Ayd~aa~~~~ 90 (354)
+..++| .|.-+.+.+|| .+-||.|. |..+|....+.+...+.
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~ 76 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLA 76 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 345554 58888888776 57889996 57888777776666554
No 16
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=23.07 E-value=47 Score=27.85 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCCeeeEccChHHH----------HhhcCCCCCCEEEEEE
Q 018549 232 SSQSFVFTRGWNRF----------VKENQLKANDTICFYL 261 (354)
Q Consensus 232 ~sr~yvLt~GW~~F----------Vr~k~Lk~GD~I~F~r 261 (354)
.-..||...||+-| ...+.|++||+|+-.-
T Consensus 87 ehPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVClslt 126 (133)
T 1oa8_A 87 EYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLT 126 (133)
T ss_dssp TCCEEETTTEEEESCHHHHHHHHCCCCEECCTTCEEEEEE
T ss_pred CCCcEEcCCcccccCHhHhhHhhCCcceecccCCEEEecc
Confidence 45678989999654 3567899999998665
No 17
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z
Probab=20.92 E-value=1.2e+02 Score=24.08 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=26.7
Q ss_pred cccccCCCCceeechhhhhh--cCCCCchhhhhhccccCCCCeEEEE--EeCCCc
Q 018549 171 TPSDVGKLNRLVIPKKYAVK--YFPQISERVEEHAENDKADDVQLVF--HDKSMK 221 (354)
Q Consensus 171 T~SDv~~~~rL~IPk~~a~~--~fP~l~~~~~~~~~~~~~~gv~v~v--~D~~g~ 221 (354)
.+.|.+..=-|.||++|... +++.-| ...|++.+ +|..|.
T Consensus 16 MqNd~G~~VDLYiPRKCSaTNRiI~AKD-----------HaSVQInIa~vd~~G~ 59 (97)
T 2xzm_Z 16 LINDKKEKIDAYLPRKCDWSNKLIFSND-----------QSSVQIAIAEVGENGQ 59 (97)
T ss_dssp CBCTTCCBCSSSCCCBCTTTCCBCCSSC-----------TTCEEEEEEEECSSSC
T ss_pred cccCCCcEEeEeccccccccCCccccCC-----------ceeEEEEhhhcCcccc
Confidence 45666666679999999765 355555 45577665 666655
No 18
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=20.69 E-value=91 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=19.2
Q ss_pred hhcCCCCCCEEEEEEeecCCccccceeEEEEEeeecC
Q 018549 247 KENQLKANDTICFYLCELRDIAKGTKTFGMIDAKKGE 283 (354)
Q Consensus 247 r~k~Lk~GD~I~F~r~~~g~~~~~~~~~~~i~~~~~~ 283 (354)
+..++++||.|+| +++. ...-++++++=+
T Consensus 30 k~~~ikvGD~I~f----~~~~----l~~~V~~v~~Y~ 58 (109)
T 2z0t_A 30 KRRQIKPGDIIIF----EGGK----LKVKVKGIRVYS 58 (109)
T ss_dssp TGGGCCTTCEEEE----GGGT----EEEEEEEEEEES
T ss_pred hhhcCCCCCEEEE----CCCE----EEEEEEEEEccC
Confidence 3457899999999 4433 334566666554
Done!