Query 018550
Match_columns 354
No_of_seqs 203 out of 2425
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02172 flavin-containing mon 100.0 1.2E-43 2.6E-48 324.7 32.0 285 2-290 10-295 (461)
2 PF00743 FMO-like: Flavin-bind 100.0 8.2E-40 1.8E-44 303.0 22.2 263 2-284 1-336 (531)
3 KOG1399 Flavin-containing mono 100.0 1.4E-36 3.1E-41 272.7 24.2 268 1-287 5-276 (448)
4 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.5E-35 5.3E-40 266.0 18.9 306 2-353 4-361 (454)
5 TIGR01424 gluta_reduc_2 glutat 100.0 6.4E-33 1.4E-37 255.9 20.5 310 2-353 2-352 (446)
6 COG0492 TrxB Thioredoxin reduc 100.0 1.4E-32 3E-37 236.8 20.1 252 1-311 2-281 (305)
7 PRK05249 soluble pyridine nucl 100.0 1.6E-32 3.4E-37 255.2 21.8 306 2-353 5-360 (461)
8 PLN02507 glutathione reductase 100.0 1.1E-32 2.5E-37 256.2 20.4 307 2-353 25-389 (499)
9 TIGR01421 gluta_reduc_1 glutat 100.0 1.2E-32 2.5E-37 253.8 20.1 302 2-353 2-355 (450)
10 TIGR01292 TRX_reduct thioredox 100.0 9.2E-32 2E-36 236.9 23.7 247 3-306 1-276 (300)
11 PRK14694 putative mercuric red 100.0 4.3E-32 9.4E-37 251.9 22.3 307 2-353 6-360 (468)
12 PRK06116 glutathione reductase 100.0 3.7E-32 8E-37 251.6 20.5 275 2-323 4-329 (450)
13 PRK10262 thioredoxin reductase 100.0 1.6E-31 3.4E-36 236.9 23.3 249 2-308 6-292 (321)
14 PRK06467 dihydrolipoamide dehy 100.0 7.2E-32 1.6E-36 250.0 21.8 305 2-353 4-362 (471)
15 PRK14727 putative mercuric red 100.0 1.6E-31 3.5E-36 248.3 22.8 307 2-353 16-371 (479)
16 PRK06416 dihydrolipoamide dehy 100.0 1.9E-31 4.1E-36 247.8 22.8 283 2-325 4-337 (462)
17 PTZ00058 glutathione reductase 100.0 2.2E-31 4.7E-36 248.5 22.9 270 1-306 47-376 (561)
18 PRK06115 dihydrolipoamide dehy 100.0 2.5E-31 5.5E-36 246.2 22.8 306 2-353 3-363 (466)
19 PRK06370 mercuric reductase; V 100.0 1.8E-31 3.8E-36 247.8 20.4 277 2-322 5-334 (463)
20 PRK15317 alkyl hydroperoxide r 100.0 5.1E-31 1.1E-35 247.1 22.1 249 2-308 211-489 (517)
21 TIGR02053 MerA mercuric reduct 100.0 1.8E-31 3.9E-36 247.9 18.3 283 3-322 1-329 (463)
22 PRK07846 mycothione reductase; 100.0 3.4E-31 7.5E-36 244.0 19.8 302 2-353 1-352 (451)
23 PTZ00052 thioredoxin reductase 100.0 1.3E-31 2.8E-36 249.4 17.0 310 2-353 5-367 (499)
24 PLN02546 glutathione reductase 100.0 1.7E-31 3.8E-36 249.3 17.8 281 2-323 79-414 (558)
25 TIGR01423 trypano_reduc trypan 100.0 4.4E-31 9.6E-36 244.1 20.1 282 2-322 3-351 (486)
26 PRK13748 putative mercuric red 100.0 6E-31 1.3E-35 250.3 21.6 283 2-323 98-429 (561)
27 PRK07845 flavoprotein disulfid 100.0 1.2E-30 2.6E-35 241.7 22.7 311 2-353 1-363 (466)
28 PRK08010 pyridine nucleotide-d 100.0 7.8E-31 1.7E-35 242.2 21.2 299 2-353 3-344 (441)
29 COG2072 TrkA Predicted flavopr 100.0 1.7E-30 3.6E-35 237.3 22.2 200 2-231 8-209 (443)
30 TIGR03140 AhpF alkyl hydropero 100.0 1.9E-30 4.2E-35 242.9 22.9 248 2-307 212-489 (515)
31 PRK05976 dihydrolipoamide dehy 100.0 1.7E-30 3.6E-35 241.7 21.9 289 2-323 4-344 (472)
32 TIGR01438 TGR thioredoxin and 100.0 2E-30 4.3E-35 240.4 22.0 307 2-353 2-370 (484)
33 PRK07251 pyridine nucleotide-d 100.0 2.3E-30 5E-35 238.9 21.6 257 2-307 3-295 (438)
34 PRK06912 acoL dihydrolipoamide 100.0 3.1E-30 6.7E-35 238.9 21.2 281 4-323 2-331 (458)
35 PRK06327 dihydrolipoamide dehy 100.0 2.7E-30 5.8E-35 240.2 20.9 309 2-353 4-372 (475)
36 TIGR01350 lipoamide_DH dihydro 100.0 7.1E-30 1.5E-34 237.5 21.4 281 2-324 1-334 (461)
37 PRK06292 dihydrolipoamide dehy 100.0 6.6E-30 1.4E-34 237.5 20.3 276 2-322 3-331 (460)
38 KOG0405 Pyridine nucleotide-di 100.0 1.7E-29 3.6E-34 210.8 20.3 308 2-344 20-374 (478)
39 TIGR03143 AhpF_homolog putativ 100.0 1.6E-29 3.5E-34 238.4 22.8 259 2-319 4-304 (555)
40 TIGR03452 mycothione_red mycot 100.0 1.1E-29 2.3E-34 234.4 20.7 275 2-322 2-328 (452)
41 PRK04965 NADH:flavorubredoxin 100.0 9E-30 2E-34 230.5 19.3 279 1-346 1-327 (377)
42 PRK07818 dihydrolipoamide dehy 100.0 6.1E-30 1.3E-34 237.5 18.4 310 2-353 4-363 (466)
43 PRK13512 coenzyme A disulfide 100.0 5.4E-30 1.2E-34 235.7 17.1 242 2-306 1-280 (438)
44 PRK09754 phenylpropionate diox 100.0 1.4E-29 3E-34 230.5 19.3 279 2-344 3-331 (396)
45 PTZ00153 lipoamide dehydrogena 100.0 2.7E-29 5.9E-34 237.4 20.7 332 2-353 116-533 (659)
46 KOG1335 Dihydrolipoamide dehyd 100.0 4.4E-29 9.5E-34 210.9 17.1 312 2-353 39-402 (506)
47 KOG0404 Thioredoxin reductase 100.0 1E-28 2.2E-33 193.9 17.6 257 3-316 9-304 (322)
48 PF13738 Pyr_redox_3: Pyridine 100.0 3E-29 6.5E-34 208.0 15.4 195 6-230 1-200 (203)
49 PRK14989 nitrite reductase sub 100.0 6.9E-29 1.5E-33 241.7 18.7 258 2-325 3-313 (847)
50 PRK09564 coenzyme A disulfide 100.0 3.3E-28 7E-33 225.4 19.2 265 3-325 1-320 (444)
51 COG1252 Ndh NADH dehydrogenase 100.0 1E-28 2.2E-33 217.6 13.9 244 1-307 2-303 (405)
52 TIGR02374 nitri_red_nirB nitri 100.0 5.4E-28 1.2E-32 235.8 17.8 254 5-323 1-302 (785)
53 COG3634 AhpF Alkyl hydroperoxi 100.0 8.4E-28 1.8E-32 200.7 14.7 256 2-314 211-498 (520)
54 PRK12831 putative oxidoreducta 100.0 1.7E-27 3.7E-32 219.6 17.9 236 2-307 140-438 (464)
55 PTZ00318 NADH dehydrogenase-li 100.0 1E-27 2.2E-32 219.8 14.8 245 2-306 10-319 (424)
56 TIGR01316 gltA glutamate synth 100.0 6.8E-27 1.5E-31 215.4 19.2 232 2-306 133-426 (449)
57 PRK09853 putative selenate red 99.9 1.6E-26 3.4E-31 224.0 19.1 247 2-323 539-841 (1019)
58 KOG4716 Thioredoxin reductase 99.9 1.3E-26 2.8E-31 193.0 15.1 274 2-307 19-343 (503)
59 PRK12779 putative bifunctional 99.9 1.8E-25 3.9E-30 219.9 21.5 234 2-307 306-604 (944)
60 PRK11749 dihydropyrimidine deh 99.9 6.4E-26 1.4E-30 210.1 16.9 233 2-307 140-429 (457)
61 PRK12770 putative glutamate sy 99.9 6.6E-25 1.4E-29 196.7 19.2 244 2-306 18-326 (352)
62 PRK12778 putative bifunctional 99.9 4.1E-25 8.8E-30 215.8 18.2 234 2-307 431-727 (752)
63 TIGR03315 Se_ygfK putative sel 99.9 7E-25 1.5E-29 213.7 19.6 245 2-322 537-838 (1012)
64 PF13434 K_oxygenase: L-lysine 99.9 2.2E-26 4.8E-31 203.0 6.0 264 2-279 2-340 (341)
65 TIGR01372 soxA sarcosine oxida 99.9 8.5E-24 1.8E-28 211.0 22.6 247 2-307 163-450 (985)
66 PRK12814 putative NADPH-depend 99.9 2.9E-24 6.2E-29 205.9 18.2 232 2-306 193-477 (652)
67 TIGR03169 Nterm_to_SelD pyridi 99.9 1.1E-24 2.3E-29 196.8 14.3 238 4-306 1-282 (364)
68 PRK12775 putative trifunctiona 99.9 1E-23 2.2E-28 209.3 19.4 212 2-281 430-687 (1006)
69 KOG1336 Monodehydroascorbate/f 99.9 5.9E-24 1.3E-28 186.1 14.9 239 2-306 74-351 (478)
70 PRK12810 gltD glutamate syntha 99.9 2.1E-23 4.6E-28 193.6 19.4 233 2-307 143-442 (471)
71 PRK12769 putative oxidoreducta 99.9 6.9E-23 1.5E-27 197.2 20.1 233 2-307 327-629 (654)
72 TIGR01318 gltD_gamma_fam gluta 99.9 1.3E-22 2.7E-27 187.7 20.1 233 2-307 141-443 (467)
73 COG1251 NirB NAD(P)H-nitrite r 99.9 4.4E-23 9.5E-28 188.9 13.4 277 2-344 3-330 (793)
74 PRK13984 putative oxidoreducta 99.9 2.2E-22 4.9E-27 192.6 16.9 234 2-308 283-581 (604)
75 PRK12809 putative oxidoreducta 99.9 5.8E-22 1.3E-26 190.0 19.1 234 2-307 310-612 (639)
76 TIGR03385 CoA_CoA_reduc CoA-di 99.9 2.4E-22 5.1E-27 185.2 15.5 201 110-323 51-305 (427)
77 KOG2495 NADH-dehydrogenase (ub 99.9 3.8E-22 8.2E-27 171.8 14.1 251 2-306 55-370 (491)
78 TIGR01317 GOGAT_sm_gam glutama 99.9 5E-21 1.1E-25 177.8 21.7 233 3-307 144-456 (485)
79 PLN02852 ferredoxin-NADP+ redu 99.9 1.8E-21 3.9E-26 178.2 18.2 161 2-231 26-221 (491)
80 PRK12771 putative glutamate sy 99.9 3.9E-21 8.5E-26 182.4 16.9 231 2-306 137-420 (564)
81 COG3486 IucD Lysine/ornithine 99.8 1.7E-19 3.7E-24 155.2 15.3 268 2-292 5-350 (436)
82 PRK06567 putative bifunctional 99.8 2.1E-18 4.6E-23 165.8 13.5 38 2-39 383-420 (1028)
83 KOG0399 Glutamate synthase [Am 99.8 2.7E-17 5.8E-22 155.7 16.5 156 2-228 1785-1956(2142)
84 COG2081 Predicted flavoprotein 99.7 5.6E-17 1.2E-21 140.1 11.6 158 1-170 2-171 (408)
85 COG0493 GltD NADPH-dependent g 99.7 5.3E-17 1.1E-21 147.4 11.9 158 2-229 123-295 (457)
86 COG0446 HcaD Uncharacterized N 99.7 4.3E-16 9.4E-21 143.4 12.6 175 114-307 64-279 (415)
87 PRK09897 hypothetical protein; 99.7 5.4E-15 1.2E-19 137.3 17.8 210 2-231 1-246 (534)
88 KOG1346 Programmed cell death 99.6 1.7E-15 3.6E-20 130.4 8.2 176 117-306 271-488 (659)
89 COG4529 Uncharacterized protei 99.6 8.6E-14 1.9E-18 123.6 18.2 216 2-231 1-232 (474)
90 PTZ00188 adrenodoxin reductase 99.6 4.6E-14 9.9E-19 127.7 14.7 42 2-43 39-81 (506)
91 PF03486 HI0933_like: HI0933-l 99.6 4.1E-15 8.9E-20 134.1 5.6 156 3-169 1-169 (409)
92 KOG2755 Oxidoreductase [Genera 99.5 2.2E-14 4.7E-19 116.3 4.9 82 137-230 79-165 (334)
93 COG1148 HdrA Heterodisulfide r 99.5 2.3E-12 4.9E-17 113.5 16.5 42 2-43 124-165 (622)
94 KOG1800 Ferredoxin/adrenodoxin 99.4 6.3E-12 1.4E-16 107.6 12.7 159 3-231 21-215 (468)
95 PF07992 Pyr_redox_2: Pyridine 99.4 3.6E-13 7.8E-18 111.3 4.9 149 4-204 1-159 (201)
96 PF13454 NAD_binding_9: FAD-NA 99.4 1.2E-11 2.7E-16 97.3 12.6 143 6-164 1-155 (156)
97 PRK04176 ribulose-1,5-biphosph 99.4 1.8E-11 3.9E-16 104.3 13.7 142 2-167 25-174 (257)
98 COG0644 FixC Dehydrogenases (f 99.4 8.5E-12 1.8E-16 113.8 12.3 148 1-165 2-151 (396)
99 PRK06847 hypothetical protein; 99.3 5.2E-11 1.1E-15 108.2 16.1 159 2-170 4-167 (375)
100 PRK10157 putative oxidoreducta 99.3 3.7E-11 8.1E-16 110.6 15.0 154 2-166 5-164 (428)
101 TIGR02032 GG-red-SF geranylger 99.3 2.5E-11 5.4E-16 106.5 12.8 146 3-167 1-149 (295)
102 PRK08244 hypothetical protein; 99.3 6.6E-11 1.4E-15 111.3 14.4 152 1-169 1-162 (493)
103 PF01494 FAD_binding_3: FAD bi 99.3 1.6E-11 3.4E-16 110.7 9.5 157 3-170 2-176 (356)
104 PRK10015 oxidoreductase; Provi 99.3 7.5E-11 1.6E-15 108.5 13.8 154 2-167 5-165 (429)
105 PRK06183 mhpA 3-(3-hydroxyphen 99.3 5.7E-11 1.2E-15 112.8 13.4 162 2-170 10-178 (538)
106 PRK05714 2-octaprenyl-3-methyl 99.3 2.5E-11 5.5E-16 111.4 10.6 162 1-170 1-172 (405)
107 TIGR00292 thiazole biosynthesi 99.3 8.1E-11 1.7E-15 99.9 12.5 141 2-166 21-170 (254)
108 TIGR02023 BchP-ChlP geranylger 99.3 8.2E-11 1.8E-15 107.3 13.4 150 3-169 1-158 (388)
109 COG0654 UbiH 2-polyprenyl-6-me 99.3 3.4E-11 7.5E-16 109.6 10.8 158 1-170 1-166 (387)
110 TIGR02028 ChlP geranylgeranyl 99.3 1.1E-10 2.4E-15 106.5 14.0 153 3-168 1-162 (398)
111 PRK08163 salicylate hydroxylas 99.3 4.8E-11 1E-15 109.3 11.8 161 2-171 4-171 (396)
112 PRK06834 hypothetical protein; 99.2 8.6E-11 1.9E-15 109.7 12.9 152 2-169 3-159 (488)
113 PRK06184 hypothetical protein; 99.2 6.2E-11 1.3E-15 111.7 12.0 164 2-170 3-172 (502)
114 PRK07364 2-octaprenyl-6-methox 99.2 5.3E-11 1.2E-15 109.7 11.3 159 2-170 18-185 (415)
115 PRK08013 oxidoreductase; Provi 99.2 6.5E-11 1.4E-15 108.4 11.6 159 2-170 3-172 (400)
116 PRK07045 putative monooxygenas 99.2 4.4E-11 9.5E-16 109.2 10.2 158 2-170 5-169 (388)
117 PLN02463 lycopene beta cyclase 99.2 8.9E-11 1.9E-15 107.8 12.1 143 2-167 28-170 (447)
118 PLN00093 geranylgeranyl diphos 99.2 1.7E-10 3.8E-15 106.3 13.9 155 1-169 38-202 (450)
119 PRK07236 hypothetical protein; 99.2 1.2E-10 2.6E-15 106.2 12.7 148 2-171 6-159 (386)
120 PRK08020 ubiF 2-octaprenyl-3-m 99.2 5.3E-11 1.2E-15 108.8 9.8 157 2-169 5-172 (391)
121 PRK06475 salicylate hydroxylas 99.2 8.7E-11 1.9E-15 107.6 11.1 156 1-171 1-172 (400)
122 TIGR00275 flavoprotein, HI0933 99.2 9.2E-11 2E-15 106.9 11.1 150 6-168 1-162 (400)
123 PRK07588 hypothetical protein; 99.2 1.4E-10 3.1E-15 105.9 12.2 158 3-171 1-163 (391)
124 PRK11445 putative oxidoreducta 99.2 1.5E-10 3.2E-15 104.0 12.0 149 2-169 1-160 (351)
125 PRK08773 2-octaprenyl-3-methyl 99.2 7.9E-11 1.7E-15 107.6 10.3 157 2-169 6-172 (392)
126 TIGR01988 Ubi-OHases Ubiquinon 99.2 7.3E-11 1.6E-15 107.7 9.8 155 4-169 1-166 (385)
127 TIGR01790 carotene-cycl lycope 99.2 2.2E-10 4.7E-15 104.6 12.8 141 4-166 1-141 (388)
128 PRK07608 ubiquinone biosynthes 99.2 1.9E-10 4.2E-15 105.0 12.4 153 1-169 4-170 (388)
129 PRK07190 hypothetical protein; 99.2 2.3E-10 4.9E-15 106.8 13.0 152 2-169 5-168 (487)
130 PRK09126 hypothetical protein; 99.2 8.9E-11 1.9E-15 107.4 9.9 158 1-169 2-170 (392)
131 PRK07333 2-octaprenyl-6-methox 99.2 7.8E-11 1.7E-15 108.2 9.5 159 2-169 1-170 (403)
132 PRK06126 hypothetical protein; 99.2 7.6E-10 1.6E-14 105.5 16.5 67 100-169 123-191 (545)
133 PF00070 Pyr_redox: Pyridine n 99.2 5.8E-10 1.3E-14 77.1 11.4 80 4-146 1-80 (80)
134 PRK06753 hypothetical protein; 99.2 2.1E-10 4.6E-15 104.2 11.4 151 3-170 1-156 (373)
135 PRK06185 hypothetical protein; 99.2 1.8E-10 4E-15 105.8 10.7 161 1-169 5-172 (407)
136 PRK07538 hypothetical protein; 99.2 6E-10 1.3E-14 102.5 13.8 153 3-171 1-170 (413)
137 PRK08849 2-octaprenyl-3-methyl 99.1 2.3E-10 5.1E-15 104.2 10.4 157 2-170 3-171 (384)
138 COG3380 Predicted NAD/FAD-depe 99.1 2.5E-10 5.5E-15 93.7 9.2 148 3-164 2-158 (331)
139 PLN02697 lycopene epsilon cycl 99.1 5.8E-10 1.3E-14 104.1 12.6 140 2-166 108-248 (529)
140 PRK08243 4-hydroxybenzoate 3-m 99.1 8.2E-10 1.8E-14 100.9 13.4 160 1-170 1-167 (392)
141 PRK05868 hypothetical protein; 99.1 4.7E-10 1E-14 101.5 11.4 159 2-171 1-165 (372)
142 TIGR01984 UbiH 2-polyprenyl-6- 99.1 2.4E-10 5.1E-15 104.2 9.4 154 4-168 1-164 (382)
143 PRK13369 glycerol-3-phosphate 99.1 7.2E-10 1.6E-14 104.2 12.7 66 101-169 153-218 (502)
144 COG1635 THI4 Ribulose 1,5-bisp 99.1 5.3E-10 1.1E-14 89.0 9.7 137 3-164 31-176 (262)
145 PRK06617 2-octaprenyl-6-methox 99.1 6E-10 1.3E-14 101.1 11.1 157 2-170 1-164 (374)
146 PRK07494 2-octaprenyl-6-methox 99.1 7.4E-10 1.6E-14 101.2 11.6 149 3-169 8-170 (388)
147 PRK05329 anaerobic glycerol-3- 99.1 5.9E-10 1.3E-14 101.2 10.5 80 200-279 218-317 (422)
148 PRK08132 FAD-dependent oxidore 99.1 1.4E-09 3E-14 103.7 13.3 158 2-169 23-188 (547)
149 PRK12266 glpD glycerol-3-phosp 99.1 2.3E-09 5.1E-14 100.7 14.6 64 103-169 155-219 (508)
150 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 9.1E-10 2E-14 100.4 11.5 152 1-171 1-168 (390)
151 TIGR03219 salicylate_mono sali 99.1 6.1E-10 1.3E-14 102.5 10.2 153 3-170 1-163 (414)
152 PRK05732 2-octaprenyl-6-methox 99.1 4.6E-10 1E-14 102.8 8.8 155 2-168 3-171 (395)
153 PRK08850 2-octaprenyl-6-methox 99.1 6.2E-10 1.3E-14 102.2 9.6 155 3-170 5-172 (405)
154 TIGR01813 flavo_cyto_c flavocy 99.1 3.1E-09 6.7E-14 98.6 14.2 162 4-167 1-193 (439)
155 PF05834 Lycopene_cycl: Lycope 99.1 3E-09 6.5E-14 96.3 13.2 135 4-165 1-141 (374)
156 PRK11728 hydroxyglutarate oxid 99.0 2.3E-09 4.9E-14 98.0 12.3 58 101-166 147-204 (393)
157 PF01266 DAO: FAD dependent ox 99.0 2.5E-09 5.5E-14 96.4 12.3 60 101-168 145-205 (358)
158 PRK08274 tricarballylate dehyd 99.0 5E-09 1.1E-13 98.0 14.3 163 2-167 4-193 (466)
159 PRK05192 tRNA uridine 5-carbox 99.0 2.5E-09 5.3E-14 100.1 12.0 143 2-166 4-157 (618)
160 PF12831 FAD_oxidored: FAD dep 99.0 1.3E-10 2.7E-15 107.0 3.2 147 4-164 1-148 (428)
161 PF01946 Thi4: Thi4 family; PD 99.0 8E-10 1.7E-14 88.6 7.2 138 2-164 17-163 (230)
162 PRK08294 phenol 2-monooxygenas 99.0 4.1E-09 9E-14 101.4 13.4 166 2-170 32-214 (634)
163 PRK04965 NADH:flavorubredoxin 99.0 9.3E-09 2E-13 93.4 15.0 99 3-169 142-240 (377)
164 PRK11259 solA N-methyltryptoph 99.0 5.4E-09 1.2E-13 95.1 13.0 63 101-171 147-209 (376)
165 PRK06996 hypothetical protein; 99.0 3.4E-09 7.4E-14 97.0 11.8 150 2-164 11-172 (398)
166 TIGR01989 COQ6 Ubiquinone bios 99.0 1.7E-09 3.7E-14 100.1 9.8 162 3-170 1-187 (437)
167 PRK06481 fumarate reductase fl 99.0 7.1E-09 1.5E-13 97.5 14.0 163 2-167 61-252 (506)
168 COG0579 Predicted dehydrogenas 99.0 9.4E-09 2E-13 92.4 13.9 60 103-167 153-212 (429)
169 COG1249 Lpd Pyruvate/2-oxoglut 99.0 1.3E-08 2.9E-13 92.9 14.1 104 2-172 173-276 (454)
170 PRK06327 dihydrolipoamide dehy 99.0 6.8E-08 1.5E-12 90.4 18.7 105 2-171 183-287 (475)
171 PRK05976 dihydrolipoamide dehy 99.0 3.6E-08 7.8E-13 92.3 16.8 105 2-172 180-285 (472)
172 TIGR01350 lipoamide_DH dihydro 98.9 2.9E-08 6.2E-13 92.8 15.7 103 2-171 170-272 (461)
173 PRK07121 hypothetical protein; 98.9 1.4E-08 3E-13 95.6 13.4 62 102-166 176-239 (492)
174 PRK09754 phenylpropionate diox 98.9 1.8E-08 3.8E-13 92.2 13.8 100 2-170 144-243 (396)
175 PLN02985 squalene monooxygenas 98.9 1.5E-08 3.3E-13 95.1 13.3 163 2-170 43-212 (514)
176 PRK07251 pyridine nucleotide-d 98.9 6.5E-08 1.4E-12 89.7 17.3 100 2-171 157-256 (438)
177 PLN02661 Putative thiazole syn 98.9 1.4E-08 3.1E-13 88.8 11.9 136 2-164 92-242 (357)
178 PRK08401 L-aspartate oxidase; 98.9 5.3E-09 1.1E-13 97.4 9.7 157 2-168 1-177 (466)
179 PRK12409 D-amino acid dehydrog 98.9 3.8E-08 8.2E-13 90.6 14.8 63 103-168 197-260 (410)
180 PRK06416 dihydrolipoamide dehy 98.9 3.3E-08 7.1E-13 92.4 14.6 105 2-172 172-276 (462)
181 PRK07803 sdhA succinate dehydr 98.9 1.3E-08 2.9E-13 97.8 12.2 163 2-167 8-214 (626)
182 TIGR01377 soxA_mon sarcosine o 98.9 1.7E-08 3.6E-13 92.0 12.2 60 101-168 143-202 (380)
183 PRK01747 mnmC bifunctional tRN 98.9 2E-08 4.3E-13 97.8 13.0 60 101-168 406-465 (662)
184 PLN02927 antheraxanthin epoxid 98.9 6.8E-09 1.5E-13 98.8 9.4 62 101-171 192-253 (668)
185 PRK06912 acoL dihydrolipoamide 98.9 7.3E-08 1.6E-12 89.8 16.1 102 2-171 170-271 (458)
186 TIGR00551 nadB L-aspartate oxi 98.9 2.7E-08 5.8E-13 93.4 13.2 161 2-167 2-190 (488)
187 PTZ00139 Succinate dehydrogena 98.9 2.3E-08 5.1E-13 95.9 12.8 165 2-168 29-231 (617)
188 PF01134 GIDA: Glucose inhibit 98.9 1.4E-08 3E-13 90.2 10.3 139 4-164 1-150 (392)
189 PRK07818 dihydrolipoamide dehy 98.9 1.1E-07 2.3E-12 88.9 16.9 105 2-171 172-276 (466)
190 PF00890 FAD_binding_2: FAD bi 98.9 8.3E-09 1.8E-13 95.2 9.3 162 4-167 1-204 (417)
191 PRK06116 glutathione reductase 98.9 4.8E-08 1E-12 90.9 14.2 102 2-171 167-268 (450)
192 KOG2820 FAD-dependent oxidored 98.9 1.6E-08 3.4E-13 85.8 9.7 66 101-172 151-218 (399)
193 PRK05249 soluble pyridine nucl 98.9 5.1E-08 1.1E-12 91.1 14.3 101 2-171 175-275 (461)
194 COG0578 GlpA Glycerol-3-phosph 98.9 4.7E-08 1E-12 89.9 13.5 164 2-168 12-227 (532)
195 TIGR00136 gidA glucose-inhibit 98.9 6.3E-08 1.4E-12 90.7 14.5 144 3-167 1-155 (617)
196 PRK07804 L-aspartate oxidase; 98.9 4.1E-08 9E-13 93.1 13.4 164 2-167 16-211 (541)
197 PRK06452 sdhA succinate dehydr 98.9 2.7E-08 5.8E-13 94.8 12.1 163 2-166 5-198 (566)
198 PLN00128 Succinate dehydrogena 98.9 5.1E-08 1.1E-12 93.7 14.0 164 3-168 51-252 (635)
199 PRK11101 glpA sn-glycerol-3-ph 98.8 5.5E-08 1.2E-12 92.3 13.9 65 101-167 147-212 (546)
200 PRK06263 sdhA succinate dehydr 98.8 2.9E-08 6.3E-13 94.3 11.8 162 2-166 7-197 (543)
201 TIGR01812 sdhA_frdA_Gneg succi 98.8 4.5E-08 9.8E-13 93.6 13.2 161 4-167 1-192 (566)
202 TIGR02053 MerA mercuric reduct 98.8 9.5E-08 2.1E-12 89.3 14.8 103 3-171 167-269 (463)
203 PRK09078 sdhA succinate dehydr 98.8 5.8E-08 1.3E-12 93.1 13.5 164 3-168 13-214 (598)
204 PF00070 Pyr_redox: Pyridine n 98.8 2.6E-09 5.6E-14 73.9 3.0 66 199-264 1-80 (80)
205 KOG3851 Sulfide:quinone oxidor 98.8 3.5E-08 7.6E-13 83.1 10.2 34 2-35 39-74 (446)
206 PRK06467 dihydrolipoamide dehy 98.8 9.4E-08 2E-12 89.3 14.4 103 3-171 175-277 (471)
207 TIGR03329 Phn_aa_oxid putative 98.8 3.3E-08 7.1E-13 92.2 11.3 60 101-169 181-240 (460)
208 PRK07057 sdhA succinate dehydr 98.8 9.1E-08 2E-12 91.6 14.4 165 2-168 12-213 (591)
209 TIGR01424 gluta_reduc_2 glutat 98.8 1E-07 2.2E-12 88.5 14.3 101 2-171 166-266 (446)
210 TIGR01421 gluta_reduc_1 glutat 98.8 9.5E-08 2.1E-12 88.7 14.0 103 2-171 166-268 (450)
211 PRK06370 mercuric reductase; V 98.8 1.3E-07 2.8E-12 88.4 14.9 104 2-171 171-274 (463)
212 PRK07573 sdhA succinate dehydr 98.8 4.7E-08 1E-12 94.2 12.2 165 2-168 35-234 (640)
213 PRK06175 L-aspartate oxidase; 98.8 3.3E-08 7.1E-13 91.2 10.5 161 2-166 4-189 (433)
214 PRK08958 sdhA succinate dehydr 98.8 6.2E-08 1.4E-12 92.6 12.7 163 3-167 8-207 (588)
215 PLN02507 glutathione reductase 98.8 1.4E-07 3E-12 88.6 14.5 101 2-171 203-303 (499)
216 PRK00711 D-amino acid dehydrog 98.8 3.3E-08 7.1E-13 91.2 10.2 59 102-168 200-259 (416)
217 PF13450 NAD_binding_8: NAD(P) 98.8 8.7E-09 1.9E-13 68.4 4.6 37 7-43 1-37 (68)
218 PRK06115 dihydrolipoamide dehy 98.8 1.8E-07 4E-12 87.3 14.9 105 2-171 174-279 (466)
219 PRK07845 flavoprotein disulfid 98.8 1.4E-07 3.1E-12 88.0 14.1 100 3-171 178-277 (466)
220 PRK07846 mycothione reductase; 98.8 1.3E-07 2.7E-12 87.9 13.7 101 2-172 166-266 (451)
221 PRK06854 adenylylsulfate reduc 98.8 1.4E-07 3.1E-12 90.5 14.2 162 3-167 12-196 (608)
222 PRK08205 sdhA succinate dehydr 98.8 1.3E-07 2.8E-12 90.6 13.6 162 2-166 5-206 (583)
223 KOG1335 Dihydrolipoamide dehyd 98.8 9.6E-08 2.1E-12 82.5 11.2 106 2-171 211-317 (506)
224 PRK13339 malate:quinone oxidor 98.8 1.8E-07 4E-12 86.8 14.0 65 102-168 183-249 (497)
225 PRK09564 coenzyme A disulfide 98.8 1.8E-07 4E-12 87.0 14.2 99 3-170 150-248 (444)
226 PLN02464 glycerol-3-phosphate 98.8 1.1E-07 2.4E-12 91.4 12.7 66 101-168 230-298 (627)
227 TIGR01320 mal_quin_oxido malat 98.8 1.2E-07 2.7E-12 88.3 12.7 66 101-168 176-242 (483)
228 PRK05945 sdhA succinate dehydr 98.7 1.2E-07 2.5E-12 90.8 12.8 163 2-167 3-198 (575)
229 PTZ00383 malate:quinone oxidor 98.7 7.5E-08 1.6E-12 89.6 11.1 62 101-167 209-274 (497)
230 PRK08010 pyridine nucleotide-d 98.7 2.1E-07 4.6E-12 86.4 14.1 99 3-171 159-257 (441)
231 COG1252 Ndh NADH dehydrogenase 98.7 1.2E-07 2.6E-12 84.8 11.6 130 4-206 157-300 (405)
232 TIGR03364 HpnW_proposed FAD de 98.7 9.3E-08 2E-12 86.6 11.2 34 3-36 1-34 (365)
233 TIGR01423 trypano_reduc trypan 98.7 2.6E-07 5.6E-12 86.3 14.1 102 2-171 187-291 (486)
234 PRK08275 putative oxidoreducta 98.7 1.6E-07 3.5E-12 89.4 12.9 163 2-166 9-200 (554)
235 PRK06069 sdhA succinate dehydr 98.7 1.5E-07 3.2E-12 90.1 12.7 162 2-166 5-200 (577)
236 PRK08071 L-aspartate oxidase; 98.7 1.4E-07 3E-12 88.9 12.3 161 2-167 3-191 (510)
237 PLN02815 L-aspartate oxidase 98.7 1.7E-07 3.6E-12 89.4 12.7 162 2-166 29-222 (594)
238 TIGR03385 CoA_CoA_reduc CoA-di 98.7 1.9E-07 4.1E-12 86.4 12.8 99 3-171 138-236 (427)
239 TIGR01789 lycopene_cycl lycope 98.7 1.5E-07 3.2E-12 85.0 11.8 129 4-165 1-137 (370)
240 TIGR03452 mycothione_red mycot 98.7 2.9E-07 6.3E-12 85.6 13.9 100 2-171 169-268 (452)
241 TIGR01176 fum_red_Fp fumarate 98.7 2.7E-07 5.7E-12 88.1 13.9 164 2-167 3-196 (580)
242 PTZ00058 glutathione reductase 98.7 3.2E-07 6.9E-12 86.8 14.2 103 2-171 237-339 (561)
243 TIGR02374 nitri_red_nirB nitri 98.7 2.6E-07 5.7E-12 91.3 13.8 101 3-171 141-241 (785)
244 PRK06292 dihydrolipoamide dehy 98.7 9E-07 2E-11 82.7 16.7 104 2-172 169-272 (460)
245 PRK09231 fumarate reductase fl 98.7 2.5E-07 5.3E-12 88.5 13.0 163 2-167 4-197 (582)
246 PRK08255 salicylyl-CoA 5-hydro 98.7 1.5E-08 3.2E-13 99.9 4.8 136 3-169 1-144 (765)
247 KOG1298 Squalene monooxygenase 98.7 5.9E-08 1.3E-12 83.8 7.7 162 2-170 45-212 (509)
248 PRK13512 coenzyme A disulfide 98.7 4.7E-07 1E-11 83.9 14.1 96 3-171 149-244 (438)
249 KOG2614 Kynurenine 3-monooxyge 98.7 7.7E-08 1.7E-12 84.3 8.2 37 1-37 1-37 (420)
250 PRK08641 sdhA succinate dehydr 98.7 3.2E-07 6.9E-12 87.9 13.2 164 2-167 3-201 (589)
251 PRK06134 putative FAD-binding 98.7 2.7E-07 5.9E-12 88.3 12.7 44 2-45 12-55 (581)
252 PRK14727 putative mercuric red 98.7 4.6E-07 1E-11 84.9 14.0 99 2-171 188-286 (479)
253 COG0665 DadA Glycine/D-amino a 98.7 2.7E-07 5.9E-12 84.3 12.2 59 103-168 156-214 (387)
254 PRK12835 3-ketosteroid-delta-1 98.7 2.7E-07 5.9E-12 88.2 12.4 42 2-43 11-52 (584)
255 PRK14694 putative mercuric red 98.7 5.1E-07 1.1E-11 84.5 13.9 99 2-171 178-276 (468)
256 PRK05257 malate:quinone oxidor 98.7 3.4E-07 7.4E-12 85.5 12.5 64 103-168 183-248 (494)
257 PRK12845 3-ketosteroid-delta-1 98.7 3.7E-07 8.1E-12 86.7 12.9 43 2-45 16-58 (564)
258 TIGR01373 soxB sarcosine oxida 98.6 6.2E-07 1.4E-11 82.5 14.0 59 102-167 182-241 (407)
259 PTZ00306 NADH-dependent fumara 98.6 4.9E-07 1.1E-11 93.0 14.3 42 2-43 409-450 (1167)
260 PRK08626 fumarate reductase fl 98.6 2.9E-07 6.3E-12 89.0 11.9 63 103-167 158-221 (657)
261 PRK14989 nitrite reductase sub 98.6 8.6E-07 1.9E-11 87.9 15.3 101 3-170 146-247 (847)
262 TIGR01811 sdhA_Bsu succinate d 98.6 2.9E-07 6.4E-12 88.2 11.7 34 5-38 1-34 (603)
263 PRK13748 putative mercuric red 98.6 6E-07 1.3E-11 86.1 13.9 99 2-171 270-368 (561)
264 PRK12842 putative succinate de 98.6 9.7E-07 2.1E-11 84.6 15.0 43 2-44 9-51 (574)
265 PRK12844 3-ketosteroid-delta-1 98.6 5.9E-07 1.3E-11 85.5 13.4 44 2-45 6-49 (557)
266 PRK07395 L-aspartate oxidase; 98.6 1.8E-07 3.9E-12 88.8 9.7 161 2-166 9-197 (553)
267 PRK13977 myosin-cross-reactive 98.6 7.8E-07 1.7E-11 82.8 13.5 42 2-43 22-67 (576)
268 PTZ00367 squalene epoxidase; P 98.6 7.4E-08 1.6E-12 91.1 6.9 34 2-35 33-66 (567)
269 PTZ00052 thioredoxin reductase 98.6 8E-07 1.7E-11 83.6 13.7 99 3-171 183-281 (499)
270 TIGR01438 TGR thioredoxin and 98.6 1.1E-06 2.4E-11 82.3 14.4 102 3-171 181-282 (484)
271 PRK09077 L-aspartate oxidase; 98.6 8.8E-07 1.9E-11 84.1 13.6 41 2-43 8-48 (536)
272 PRK12837 3-ketosteroid-delta-1 98.6 1.2E-06 2.7E-11 82.7 14.3 41 2-43 7-47 (513)
273 PRK12839 hypothetical protein; 98.6 1.4E-06 3.1E-11 83.0 14.8 44 2-45 8-51 (572)
274 KOG2404 Fumarate reductase, fl 98.6 3.7E-07 8E-12 77.2 9.2 164 4-167 11-207 (477)
275 PLN02546 glutathione reductase 98.6 1.2E-06 2.5E-11 83.1 13.7 102 2-171 252-353 (558)
276 TIGR02061 aprA adenosine phosp 98.6 7.1E-07 1.5E-11 85.2 12.3 165 4-171 1-196 (614)
277 COG0446 HcaD Uncharacterized N 98.6 7.7E-07 1.7E-11 81.9 12.3 99 3-169 137-238 (415)
278 KOG0029 Amine oxidase [Seconda 98.6 8.1E-08 1.8E-12 89.1 5.6 42 2-43 15-56 (501)
279 PTZ00318 NADH dehydrogenase-li 98.6 2.1E-06 4.4E-11 79.3 14.8 91 3-164 174-278 (424)
280 PRK12834 putative FAD-binding 98.6 1.5E-06 3.3E-11 82.8 14.1 43 2-44 4-48 (549)
281 PRK12843 putative FAD-binding 98.5 1.1E-06 2.3E-11 84.2 12.6 44 2-45 16-59 (578)
282 PTZ00153 lipoamide dehydrogena 98.5 1.6E-06 3.5E-11 83.3 13.8 107 2-172 312-431 (659)
283 COG3075 GlpB Anaerobic glycero 98.5 1.7E-06 3.8E-11 73.5 12.2 35 1-35 1-35 (421)
284 PRK07843 3-ketosteroid-delta-1 98.5 1.4E-06 3E-11 83.0 12.8 43 2-44 7-49 (557)
285 PRK07512 L-aspartate oxidase; 98.5 9.1E-07 2E-11 83.4 11.2 159 2-166 9-197 (513)
286 COG1231 Monoamine oxidase [Ami 98.5 2.5E-06 5.3E-11 76.1 13.0 42 2-43 7-48 (450)
287 COG0445 GidA Flavin-dependent 98.4 1.1E-06 2.3E-11 79.9 8.8 150 3-166 5-158 (621)
288 TIGR02485 CobZ_N-term precorri 98.4 3.6E-06 7.8E-11 78.0 12.7 60 102-166 122-183 (432)
289 PRK10262 thioredoxin reductase 98.4 4.3E-06 9.3E-11 74.3 12.7 104 2-171 146-251 (321)
290 PF04820 Trp_halogenase: Trypt 98.4 9.1E-07 2E-11 82.0 8.6 57 100-164 151-209 (454)
291 KOG2415 Electron transfer flav 98.4 4.4E-06 9.5E-11 73.3 11.3 152 3-165 77-255 (621)
292 COG1233 Phytoene dehydrogenase 98.4 4.6E-07 1E-11 84.9 5.6 40 2-41 3-42 (487)
293 PF13434 K_oxygenase: L-lysine 98.4 2E-06 4.2E-11 76.6 9.2 42 122-163 296-338 (341)
294 PF06039 Mqo: Malate:quinone o 98.4 9.2E-06 2E-10 72.9 13.2 63 104-168 182-246 (488)
295 COG3349 Uncharacterized conser 98.3 5.7E-07 1.2E-11 81.5 5.2 42 3-44 1-42 (485)
296 PRK11883 protoporphyrinogen ox 98.3 6.3E-07 1.4E-11 83.6 5.6 41 3-43 1-43 (451)
297 PRK13800 putative oxidoreducta 98.3 7.6E-06 1.6E-10 82.4 13.5 35 2-36 13-47 (897)
298 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 2.7E-06 5.8E-11 77.1 8.9 36 3-38 1-36 (433)
299 PRK07208 hypothetical protein; 98.3 7.8E-07 1.7E-11 83.6 5.8 42 2-43 4-45 (479)
300 TIGR03140 AhpF alkyl hydropero 98.3 9.1E-06 2E-10 76.9 12.7 99 3-171 353-453 (515)
301 KOG1336 Monodehydroascorbate/f 98.3 8.3E-06 1.8E-10 73.0 11.2 105 3-174 214-319 (478)
302 COG1053 SdhA Succinate dehydro 98.3 4.6E-06 1E-10 78.7 10.1 163 2-166 6-202 (562)
303 KOG2495 NADH-dehydrogenase (ub 98.3 7.9E-06 1.7E-10 72.0 10.5 100 4-170 220-333 (491)
304 COG2081 Predicted flavoprotein 98.3 1.5E-06 3.3E-11 76.2 6.0 82 198-279 4-166 (408)
305 PLN02268 probable polyamine ox 98.3 1.1E-06 2.3E-11 81.6 5.5 41 3-43 1-41 (435)
306 TIGR01292 TRX_reduct thioredox 98.3 1.6E-05 3.4E-10 69.9 12.6 98 2-170 141-240 (300)
307 TIGR00562 proto_IX_ox protopor 98.3 1.3E-06 2.7E-11 81.9 5.7 42 2-43 2-47 (462)
308 PRK07233 hypothetical protein; 98.2 1.4E-06 3E-11 80.9 5.5 39 4-42 1-39 (434)
309 TIGR03169 Nterm_to_SelD pyridi 98.2 3.2E-05 6.9E-10 70.0 14.0 93 3-169 146-244 (364)
310 TIGR00031 UDP-GALP_mutase UDP- 98.2 1.7E-06 3.7E-11 77.6 5.5 42 2-43 1-42 (377)
311 COG2907 Predicted NAD/FAD-bind 98.2 1E-05 2.2E-10 69.5 9.6 41 2-43 8-48 (447)
312 PLN02576 protoporphyrinogen ox 98.2 2E-06 4.3E-11 81.3 5.6 42 2-43 12-54 (496)
313 COG1232 HemY Protoporphyrinoge 98.2 2.1E-06 4.5E-11 78.0 5.4 41 3-43 1-43 (444)
314 PRK12416 protoporphyrinogen ox 98.2 2E-06 4.4E-11 80.5 5.5 42 2-43 1-48 (463)
315 TIGR02733 desat_CrtD C-3',4' d 98.2 2.1E-06 4.6E-11 80.9 5.4 40 2-41 1-40 (492)
316 TIGR03862 flavo_PP4765 unchara 98.2 8.5E-06 1.8E-10 72.9 8.9 134 25-169 1-144 (376)
317 TIGR01316 gltA glutamate synth 98.2 0.00016 3.4E-09 67.3 17.2 33 3-35 273-305 (449)
318 PRK05335 tRNA (uracil-5-)-meth 98.1 3E-06 6.4E-11 76.4 5.3 37 1-37 1-37 (436)
319 COG2509 Uncharacterized FAD-de 98.1 4.3E-05 9.3E-10 68.2 12.2 59 103-167 173-231 (486)
320 PRK12770 putative glutamate sy 98.1 3.7E-05 8E-10 69.2 12.0 33 3-35 173-206 (352)
321 PRK15317 alkyl hydroperoxide r 98.1 3E-05 6.5E-10 73.5 11.8 98 3-171 352-452 (517)
322 TIGR02734 crtI_fam phytoene de 98.1 2.9E-06 6.3E-11 80.3 4.8 56 103-164 219-274 (502)
323 COG0562 Glf UDP-galactopyranos 98.1 4.5E-06 9.8E-11 70.8 5.1 42 2-43 1-42 (374)
324 PLN02568 polyamine oxidase 98.1 4.4E-06 9.5E-11 79.0 5.7 42 2-43 5-51 (539)
325 TIGR02731 phytoene_desat phyto 98.1 3.9E-06 8.4E-11 78.4 5.1 39 4-42 1-39 (453)
326 TIGR02730 carot_isom carotene 98.1 5.4E-06 1.2E-10 78.2 5.4 58 103-166 229-286 (493)
327 KOG0685 Flavin-containing amin 98.1 7.1E-06 1.5E-10 73.4 5.7 40 3-42 22-62 (498)
328 PF07992 Pyr_redox_2: Pyridine 98.0 9.9E-07 2.1E-11 72.7 0.1 86 199-284 1-126 (201)
329 PF13738 Pyr_redox_3: Pyridine 98.0 3.8E-06 8.2E-11 69.3 3.4 78 201-278 1-136 (203)
330 PLN02529 lysine-specific histo 98.0 6.7E-06 1.5E-10 79.7 5.5 42 2-43 160-201 (738)
331 PRK11749 dihydropyrimidine deh 98.0 0.00012 2.6E-09 68.4 13.5 33 3-35 274-307 (457)
332 PRK12831 putative oxidoreducta 98.0 0.00012 2.6E-09 68.3 12.9 33 3-35 282-314 (464)
333 KOG2311 NAD/FAD-utilizing prot 98.0 2.9E-05 6.3E-10 69.4 8.1 33 2-34 28-60 (679)
334 COG0029 NadB Aspartate oxidase 98.0 5.7E-05 1.2E-09 68.2 10.0 156 4-164 9-194 (518)
335 PF03486 HI0933_like: HI0933-l 98.0 3.9E-06 8.4E-11 76.3 2.6 81 199-279 2-165 (409)
336 PLN02676 polyamine oxidase 98.0 1.1E-05 2.4E-10 75.6 5.3 42 2-43 26-68 (487)
337 TIGR02732 zeta_caro_desat caro 98.0 1.2E-05 2.5E-10 75.3 5.5 40 4-43 1-40 (474)
338 TIGR03143 AhpF_homolog putativ 97.9 0.00011 2.3E-09 70.4 11.5 33 3-35 144-176 (555)
339 KOG2844 Dimethylglycine dehydr 97.9 3E-05 6.5E-10 72.1 7.3 61 100-167 184-244 (856)
340 PLN02487 zeta-carotene desatur 97.9 1.6E-05 3.4E-10 75.4 5.6 41 2-42 75-115 (569)
341 PRK12779 putative bifunctional 97.9 1.1E-05 2.5E-10 80.9 4.8 79 196-279 305-403 (944)
342 PLN02328 lysine-specific histo 97.9 1.5E-05 3.2E-10 77.9 5.3 42 2-43 238-279 (808)
343 KOG2853 Possible oxidoreductas 97.9 0.00022 4.8E-09 61.3 11.3 35 2-36 86-124 (509)
344 PRK06847 hypothetical protein; 97.9 2.9E-05 6.3E-10 70.6 6.7 84 197-280 4-163 (375)
345 PF01134 GIDA: Glucose inhibit 97.9 2E-05 4.4E-10 70.4 5.3 80 199-278 1-150 (392)
346 PRK12810 gltD glutamate syntha 97.9 0.00022 4.8E-09 66.8 12.4 32 3-34 282-314 (471)
347 KOG3851 Sulfide:quinone oxidor 97.9 7E-05 1.5E-09 63.7 7.8 94 197-293 39-155 (446)
348 KOG2852 Possible oxidoreductas 97.8 0.0002 4.4E-09 60.1 9.5 37 2-38 10-52 (380)
349 PLN02612 phytoene desaturase 97.8 3.3E-05 7.1E-10 73.9 5.5 41 2-42 93-133 (567)
350 PTZ00363 rab-GDP dissociation 97.8 2.8E-05 6.1E-10 71.5 4.7 41 2-42 4-44 (443)
351 KOG0042 Glycerol-3-phosphate d 97.7 4.3E-05 9.2E-10 69.4 5.3 39 2-40 67-105 (680)
352 PRK01438 murD UDP-N-acetylmura 97.7 0.00012 2.7E-09 68.8 8.7 34 2-35 16-49 (480)
353 PRK12778 putative bifunctional 97.7 0.0013 2.9E-08 65.4 16.2 33 3-35 571-604 (752)
354 PLN02463 lycopene beta cyclase 97.7 8.7E-05 1.9E-09 68.6 7.1 83 198-280 29-169 (447)
355 PRK06753 hypothetical protein; 97.7 0.00013 2.7E-09 66.4 7.7 81 199-279 2-151 (373)
356 PF00743 FMO-like: Flavin-bind 97.7 5.5E-05 1.2E-09 71.4 5.4 35 197-231 1-35 (531)
357 PLN03000 amine oxidase 97.7 5.5E-05 1.2E-09 74.2 5.4 42 2-43 184-225 (881)
358 PRK07236 hypothetical protein; 97.7 0.00013 2.8E-09 66.7 7.6 83 197-279 6-153 (386)
359 PRK09853 putative selenate red 97.7 4.7E-05 1E-09 75.9 4.9 78 195-279 537-634 (1019)
360 KOG1276 Protoporphyrinogen oxi 97.7 6.3E-05 1.4E-09 66.5 5.1 42 2-43 11-54 (491)
361 TIGR01372 soxA sarcosine oxida 97.7 0.00052 1.1E-08 70.0 12.4 95 3-170 318-413 (985)
362 PRK05868 hypothetical protein; 97.7 0.00015 3.2E-09 65.8 7.6 33 198-230 2-34 (372)
363 PF06100 Strep_67kDa_ant: Stre 97.7 0.00095 2.1E-08 60.9 12.5 43 2-44 2-48 (500)
364 PRK07588 hypothetical protein; 97.7 0.00013 2.8E-09 66.8 7.3 82 199-280 2-158 (391)
365 TIGR01318 gltD_gamma_fam gluta 97.7 0.00087 1.9E-08 62.7 12.8 33 3-35 283-316 (467)
366 PRK12814 putative NADPH-depend 97.6 0.0023 4.9E-08 62.5 15.9 34 2-35 323-357 (652)
367 KOG0405 Pyridine nucleotide-di 97.6 0.00028 6E-09 60.9 8.2 101 2-170 189-289 (478)
368 KOG2665 Predicted FAD-dependen 97.6 0.00031 6.8E-09 59.7 8.4 62 100-165 193-256 (453)
369 PLN02976 amine oxidase 97.6 7.4E-05 1.6E-09 76.2 5.6 43 2-44 693-735 (1713)
370 PRK08163 salicylate hydroxylas 97.6 0.00015 3.4E-09 66.4 7.3 34 197-230 4-37 (396)
371 COG2072 TrkA Predicted flavopr 97.6 0.00021 4.5E-09 66.2 7.7 91 198-289 9-152 (443)
372 PF00732 GMC_oxred_N: GMC oxid 97.6 6.1E-05 1.3E-09 66.1 3.8 35 3-37 1-36 (296)
373 KOG1346 Programmed cell death 97.6 0.00029 6.3E-09 62.1 7.8 59 103-170 393-451 (659)
374 TIGR00137 gid_trmFO tRNA:m(5)U 97.6 0.0001 2.2E-09 67.0 5.0 32 199-230 2-33 (433)
375 TIGR01789 lycopene_cycl lycope 97.6 0.00024 5.2E-09 64.3 7.4 80 200-280 2-138 (370)
376 PF05834 Lycopene_cycl: Lycope 97.5 0.00025 5.5E-09 64.3 7.5 80 200-279 2-141 (374)
377 PRK12769 putative oxidoreducta 97.5 0.002 4.3E-08 63.0 14.1 33 3-35 469-502 (654)
378 TIGR02462 pyranose_ox pyranose 97.5 0.00011 2.3E-09 69.2 5.1 38 3-40 1-38 (544)
379 PRK08773 2-octaprenyl-3-methyl 97.5 0.00019 4.1E-09 65.7 6.6 33 198-230 7-39 (392)
380 KOG1399 Flavin-containing mono 97.5 0.00047 1E-08 63.3 8.6 91 197-287 6-162 (448)
381 PRK06834 hypothetical protein; 97.5 0.00023 5E-09 66.9 6.6 83 198-280 4-156 (488)
382 PRK12775 putative trifunctiona 97.4 0.0001 2.2E-09 74.9 3.7 35 196-230 429-463 (1006)
383 PLN02852 ferredoxin-NADP+ redu 97.4 0.00012 2.6E-09 68.1 3.8 36 196-231 25-62 (491)
384 PRK01438 murD UDP-N-acetylmura 97.4 0.00013 2.9E-09 68.6 4.3 77 196-288 15-95 (480)
385 COG0492 TrxB Thioredoxin reduc 97.4 0.0026 5.7E-08 55.6 11.7 97 2-170 143-240 (305)
386 PF13454 NAD_binding_9: FAD-NA 97.4 0.00048 1.1E-08 54.1 6.6 30 201-230 1-35 (156)
387 COG0654 UbiH 2-polyprenyl-6-me 97.4 0.00036 7.8E-09 63.7 6.6 82 198-279 3-161 (387)
388 COG3486 IucD Lysine/ornithine 97.4 0.0037 8.1E-08 55.4 12.4 50 121-172 294-344 (436)
389 TIGR02032 GG-red-SF geranylger 97.4 0.00033 7.2E-09 61.2 6.0 32 199-230 2-33 (295)
390 PRK07333 2-octaprenyl-6-methox 97.4 0.00037 8E-09 64.1 6.3 32 199-230 3-36 (403)
391 KOG2311 NAD/FAD-utilizing prot 97.4 0.00058 1.3E-08 61.4 7.0 33 198-230 29-61 (679)
392 PRK05192 tRNA uridine 5-carbox 97.4 0.00041 9E-09 65.7 6.5 32 198-229 5-36 (618)
393 KOG3855 Monooxygenase involved 97.4 0.0013 2.9E-08 58.1 9.0 33 2-34 36-72 (481)
394 PLN02172 flavin-containing mon 97.4 0.00056 1.2E-08 63.7 7.2 34 2-35 204-237 (461)
395 COG1251 NirB NAD(P)H-nitrite r 97.3 0.00053 1.1E-08 65.0 6.9 100 3-170 146-245 (793)
396 PRK07494 2-octaprenyl-6-methox 97.3 0.00059 1.3E-08 62.4 7.3 33 198-230 8-40 (388)
397 PRK05714 2-octaprenyl-3-methyl 97.3 0.00047 1E-08 63.4 6.5 33 198-230 3-35 (405)
398 PRK07045 putative monooxygenas 97.3 0.00064 1.4E-08 62.2 7.3 33 198-230 6-38 (388)
399 PF01266 DAO: FAD dependent ox 97.3 0.00019 4.2E-09 64.5 3.8 32 199-230 1-32 (358)
400 TIGR03219 salicylate_mono sali 97.3 0.00061 1.3E-08 62.9 7.1 33 199-231 2-35 (414)
401 PRK09126 hypothetical protein; 97.3 0.00052 1.1E-08 62.8 6.5 33 198-230 4-36 (392)
402 PRK06184 hypothetical protein; 97.3 0.00057 1.2E-08 64.7 6.6 33 198-230 4-36 (502)
403 PRK13984 putative oxidoreducta 97.3 0.013 2.9E-07 56.9 15.9 30 3-32 419-454 (604)
404 PRK12809 putative oxidoreducta 97.3 0.0055 1.2E-07 59.7 13.2 33 3-35 452-485 (639)
405 TIGR01790 carotene-cycl lycope 97.2 0.00084 1.8E-08 61.4 7.1 31 200-230 2-32 (388)
406 PRK02106 choline dehydrogenase 97.2 0.00037 8E-09 66.9 4.7 68 108-177 206-273 (560)
407 PRK06567 putative bifunctional 97.2 0.0004 8.7E-09 68.8 5.0 36 195-230 381-416 (1028)
408 PRK07364 2-octaprenyl-6-methox 97.2 0.00078 1.7E-08 62.2 6.6 34 197-230 18-51 (415)
409 TIGR03315 Se_ygfK putative sel 97.2 0.0061 1.3E-07 61.5 13.1 34 2-35 666-701 (1012)
410 TIGR01984 UbiH 2-polyprenyl-6- 97.2 0.00077 1.7E-08 61.5 6.3 31 200-230 2-33 (382)
411 PRK08849 2-octaprenyl-3-methyl 97.2 0.00075 1.6E-08 61.6 6.2 33 198-230 4-36 (384)
412 PRK08020 ubiF 2-octaprenyl-3-m 97.2 0.00094 2E-08 61.1 6.8 33 198-230 6-38 (391)
413 PRK10157 putative oxidoreducta 97.2 0.00066 1.4E-08 62.8 5.8 33 198-230 6-38 (428)
414 TIGR01988 Ubi-OHases Ubiquinon 97.2 0.00078 1.7E-08 61.4 6.3 31 200-230 2-32 (385)
415 KOG2960 Protein involved in th 97.2 0.00038 8.3E-09 55.7 3.5 38 3-40 77-116 (328)
416 TIGR01317 GOGAT_sm_gam glutama 97.2 0.037 8E-07 52.2 17.3 34 3-36 284-318 (485)
417 PLN02697 lycopene epsilon cycl 97.2 0.00092 2E-08 63.0 6.4 83 198-280 109-248 (529)
418 PRK07190 hypothetical protein; 97.1 0.00086 1.9E-08 63.0 6.1 33 198-230 6-38 (487)
419 PF01494 FAD_binding_3: FAD bi 97.1 0.00042 9.2E-09 62.2 4.0 33 199-231 3-35 (356)
420 PRK08244 hypothetical protein; 97.1 0.00089 1.9E-08 63.3 5.9 33 198-230 3-35 (493)
421 PRK07608 ubiquinone biosynthes 97.1 0.0013 2.8E-08 60.1 6.7 33 198-230 6-38 (388)
422 PRK08850 2-octaprenyl-6-methox 97.1 0.0012 2.7E-08 60.7 6.4 32 198-229 5-36 (405)
423 COG0445 GidA Flavin-dependent 97.1 0.00073 1.6E-08 62.0 4.7 33 198-230 5-37 (621)
424 PRK09897 hypothetical protein; 97.1 0.0012 2.7E-08 62.2 6.3 33 198-230 2-36 (534)
425 PTZ00188 adrenodoxin reductase 97.1 0.00077 1.7E-08 62.1 4.8 36 196-231 38-74 (506)
426 KOG3923 D-aspartate oxidase [A 97.0 0.0014 3E-08 55.4 5.8 34 1-34 2-42 (342)
427 PRK08013 oxidoreductase; Provi 97.0 0.0016 3.4E-08 59.8 6.7 33 198-230 4-36 (400)
428 PRK06475 salicylate hydroxylas 97.0 0.0016 3.5E-08 59.8 6.6 33 198-230 3-35 (400)
429 TIGR03378 glycerol3P_GlpB glyc 97.0 0.00089 1.9E-08 60.7 4.7 33 3-35 1-33 (419)
430 PRK12771 putative glutamate sy 97.0 0.03 6.6E-07 53.9 15.4 33 2-34 267-300 (564)
431 COG1206 Gid NAD(FAD)-utilizing 97.0 0.00073 1.6E-08 57.9 3.8 35 1-35 2-36 (439)
432 PRK06617 2-octaprenyl-6-methox 97.0 0.0018 3.8E-08 58.9 6.4 31 199-229 3-33 (374)
433 TIGR00292 thiazole biosynthesi 96.9 0.0016 3.5E-08 55.5 5.6 34 197-230 21-54 (254)
434 COG1635 THI4 Ribulose 1,5-bisp 96.9 0.0028 6E-08 51.4 6.3 38 194-231 27-64 (262)
435 COG2303 BetA Choline dehydroge 96.9 0.00086 1.9E-08 63.8 4.1 69 107-177 207-277 (542)
436 PRK14106 murD UDP-N-acetylmura 96.9 0.0018 4E-08 60.4 6.3 33 2-34 5-37 (450)
437 COG0644 FixC Dehydrogenases (f 96.9 0.0019 4.1E-08 59.2 6.2 33 199-231 5-37 (396)
438 PRK05732 2-octaprenyl-6-methox 96.9 0.0021 4.6E-08 58.8 6.5 32 198-229 4-38 (395)
439 TIGR00275 flavoprotein, HI0933 96.9 0.0013 2.9E-08 60.2 4.8 30 201-230 1-30 (400)
440 KOG4716 Thioredoxin reductase 96.9 0.004 8.7E-08 53.7 7.1 98 4-164 200-298 (503)
441 PRK10015 oxidoreductase; Provi 96.9 0.0019 4.1E-08 59.8 5.7 33 198-230 6-38 (429)
442 PF12831 FAD_oxidored: FAD dep 96.9 0.00078 1.7E-08 62.3 3.1 80 200-279 2-149 (428)
443 PF04820 Trp_halogenase: Trypt 96.9 0.0015 3.3E-08 60.7 5.1 32 199-230 1-35 (454)
444 TIGR01810 betA choline dehydro 96.8 0.001 2.3E-08 63.4 3.9 71 105-177 196-266 (532)
445 TIGR00136 gidA glucose-inhibit 96.8 0.0028 6.2E-08 60.1 6.7 31 199-229 2-32 (617)
446 KOG0399 Glutamate synthase [Am 96.8 0.0014 3.1E-08 64.7 4.8 40 192-231 1780-1819(2142)
447 PRK04176 ribulose-1,5-biphosph 96.8 0.0021 4.5E-08 55.0 5.3 35 196-230 24-58 (257)
448 TIGR01470 cysG_Nterm siroheme 96.8 0.00095 2.1E-08 54.9 3.1 73 196-279 8-80 (205)
449 PRK11728 hydroxyglutarate oxid 96.8 0.0024 5.3E-08 58.4 6.1 32 199-230 4-37 (393)
450 PRK08243 4-hydroxybenzoate 3-m 96.8 0.0036 7.7E-08 57.3 6.8 33 198-230 3-35 (392)
451 COG0493 GltD NADPH-dependent g 96.8 0.001 2.3E-08 61.3 3.3 38 194-231 120-157 (457)
452 PLN02785 Protein HOTHEAD 96.7 0.0018 4E-08 62.1 4.6 33 2-35 55-87 (587)
453 COG3380 Predicted NAD/FAD-depe 96.7 0.0023 4.9E-08 53.6 4.3 32 199-230 3-34 (331)
454 PRK06996 hypothetical protein; 96.7 0.0031 6.7E-08 57.9 5.6 33 198-230 12-48 (398)
455 COG0579 Predicted dehydrogenas 96.7 0.0033 7.2E-08 57.2 5.5 33 198-230 4-38 (429)
456 PF01210 NAD_Gly3P_dh_N: NAD-d 96.6 0.0024 5.3E-08 50.2 4.1 32 4-35 1-32 (157)
457 COG3573 Predicted oxidoreducta 96.6 0.0027 5.8E-08 54.7 4.4 39 2-40 5-45 (552)
458 PRK06183 mhpA 3-(3-hydroxyphen 96.6 0.0039 8.4E-08 59.6 6.1 33 198-230 11-43 (538)
459 PRK01747 mnmC bifunctional tRN 96.6 0.0058 1.3E-07 60.0 7.4 33 198-230 261-293 (662)
460 PLN02927 antheraxanthin epoxid 96.6 0.0068 1.5E-07 58.6 7.6 35 196-230 80-114 (668)
461 KOG2755 Oxidoreductase [Genera 96.6 0.0019 4.1E-08 53.6 3.2 79 200-279 2-103 (334)
462 PRK11445 putative oxidoreducta 96.6 0.0051 1.1E-07 55.4 6.4 31 199-230 3-33 (351)
463 PF13450 NAD_binding_8: NAD(P) 96.6 0.0026 5.6E-08 42.1 3.2 30 202-231 1-30 (68)
464 COG1148 HdrA Heterodisulfide r 96.6 0.0042 9.1E-08 56.2 5.3 36 196-231 123-158 (622)
465 PRK05329 anaerobic glycerol-3- 96.5 0.027 5.8E-07 51.8 10.3 57 103-164 259-316 (422)
466 KOG2614 Kynurenine 3-monooxyge 96.5 0.0089 1.9E-07 53.2 6.8 33 198-230 3-35 (420)
467 PRK08132 FAD-dependent oxidore 96.4 0.0058 1.3E-07 58.6 6.0 33 198-230 24-56 (547)
468 PRK06185 hypothetical protein; 96.4 0.0062 1.3E-07 56.1 6.0 33 198-230 7-39 (407)
469 TIGR02360 pbenz_hydroxyl 4-hyd 96.4 0.0092 2E-07 54.6 6.6 33 198-230 3-35 (390)
470 PRK07538 hypothetical protein; 96.4 0.01 2.2E-07 54.7 7.0 32 199-230 2-33 (413)
471 PF02737 3HCDH_N: 3-hydroxyacy 96.4 0.0057 1.2E-07 49.2 4.6 32 4-35 1-32 (180)
472 COG0569 TrkA K+ transport syst 96.3 0.0056 1.2E-07 51.2 4.5 34 3-36 1-34 (225)
473 KOG4254 Phytoene desaturase [C 96.3 0.0042 9.1E-08 55.7 3.8 39 2-40 14-52 (561)
474 TIGR02023 BchP-ChlP geranylger 96.3 0.0098 2.1E-07 54.4 6.4 31 199-229 2-32 (388)
475 PRK06126 hypothetical protein; 96.3 0.0085 1.8E-07 57.5 6.1 34 197-230 7-40 (545)
476 PRK05675 sdhA succinate dehydr 96.2 0.038 8.3E-07 53.1 10.0 64 102-167 125-190 (570)
477 PF03721 UDPG_MGDP_dh_N: UDP-g 96.2 0.0062 1.4E-07 49.2 3.9 34 3-36 1-34 (185)
478 PF13241 NAD_binding_7: Putati 96.1 0.006 1.3E-07 44.1 3.3 35 196-230 6-40 (103)
479 PF13241 NAD_binding_7: Putati 96.1 0.0056 1.2E-07 44.3 3.1 33 2-34 7-39 (103)
480 PRK06718 precorrin-2 dehydroge 96.1 0.0089 1.9E-07 49.1 4.6 35 196-230 9-43 (202)
481 PRK05335 tRNA (uracil-5-)-meth 96.0 0.0061 1.3E-07 55.4 3.5 33 198-230 3-35 (436)
482 PRK06719 precorrin-2 dehydroge 96.0 0.014 2.9E-07 45.8 4.9 32 2-33 13-44 (157)
483 TIGR01470 cysG_Nterm siroheme 95.9 0.015 3.2E-07 47.9 4.9 33 2-34 9-41 (205)
484 KOG1238 Glucose dehydrogenase/ 95.9 0.009 2E-07 56.2 4.1 36 2-37 57-93 (623)
485 PRK08229 2-dehydropantoate 2-r 95.9 0.012 2.7E-07 52.7 4.9 34 1-34 1-34 (341)
486 TIGR03197 MnmC_Cterm tRNA U-34 95.8 0.028 6.1E-07 51.2 7.1 61 101-169 133-193 (381)
487 PRK06129 3-hydroxyacyl-CoA deh 95.8 0.013 2.8E-07 51.7 4.6 34 2-35 2-35 (308)
488 TIGR01989 COQ6 Ubiquinone bios 95.8 0.02 4.3E-07 53.3 6.0 30 199-228 2-35 (437)
489 COG4529 Uncharacterized protei 95.8 0.035 7.6E-07 50.7 7.3 34 198-231 2-38 (474)
490 COG3634 AhpF Alkyl hydroperoxi 95.8 0.25 5.3E-06 43.3 11.8 104 2-175 354-459 (520)
491 PRK02705 murD UDP-N-acetylmura 95.7 0.013 2.8E-07 55.0 4.6 33 4-36 2-34 (459)
492 PRK05708 2-dehydropantoate 2-r 95.7 0.018 3.8E-07 50.8 5.2 34 1-34 1-34 (305)
493 PRK06481 fumarate reductase fl 95.7 0.016 3.5E-07 54.9 5.1 33 198-230 62-94 (506)
494 PRK05562 precorrin-2 dehydroge 95.7 0.017 3.6E-07 47.8 4.5 36 196-231 24-59 (223)
495 KOG2820 FAD-dependent oxidored 95.7 0.029 6.3E-07 48.6 5.9 34 197-230 7-40 (399)
496 PRK07819 3-hydroxybutyryl-CoA 95.6 0.016 3.5E-07 50.4 4.5 34 3-36 6-39 (286)
497 PRK06718 precorrin-2 dehydroge 95.6 0.022 4.8E-07 46.8 5.0 33 2-34 10-42 (202)
498 PF00899 ThiF: ThiF family; I 95.6 0.023 5E-07 43.4 4.7 33 2-34 2-35 (135)
499 PRK07066 3-hydroxybutyryl-CoA 95.6 0.018 3.9E-07 50.8 4.6 33 3-35 8-40 (321)
500 PRK09260 3-hydroxybutyryl-CoA 95.5 0.018 3.8E-07 50.3 4.4 33 3-35 2-34 (288)
No 1
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.2e-43 Score=324.67 Aligned_cols=285 Identities=58% Similarity=1.033 Sum_probs=244.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+++|+.|++.|+++++||+++.+||.|.+.+....++.++.|.....++..|..+..+.|...++++
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 58999999999999999999999999999999999999999987766666677777667788899999999999999999
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
++|+...........+.||++.++.+|++++++++++..+++++++|+++++.+ +.|.|++.++.+...+..||.||+|
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeEEEEEEcCCCceEEEEcCEEEEe
Confidence 999865322222245689999999999999999999988899999999999876 8899998765433346789999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccccCC-C
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-G 240 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~l~-~ 240 (354)
||+.+.|++|.++|.+.+.+..+|++.++.+..+++++|+|||+|.+|+|+|..|++.+++|++++|++......++. .
T Consensus 169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~ 248 (461)
T PLN02172 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVP 248 (461)
T ss_pred ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCC
Confidence 999889999999999999999999999999888999999999999999999999999999999999976533333332 3
Q ss_pred CCCeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCc
Q 018550 241 YDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKP 290 (354)
Q Consensus 241 ~~~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~ 290 (354)
..+++.+..|..+.+++.|++.||+.+++|.||+|||+. |+.+||..
T Consensus 249 ~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~---~~~pfL~~ 295 (461)
T PLN02172 249 QNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYK---YHFPFLET 295 (461)
T ss_pred CCceEECCcccceecCCeEEECCCCCccCCEEEECCcCC---ccccccCc
Confidence 346777888888777777999999999999999999999 55567754
No 2
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=8.2e-40 Score=302.99 Aligned_cols=263 Identities=37% Similarity=0.678 Sum_probs=194.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+|+|+|||||++|+++|+.|.+.|+++++||+++.+||.|.+..... --.+..|+.+..+.+..++.++
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~-----------~g~~~~y~sl~~n~sk~~~~fs 69 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPE-----------DGRSSVYDSLHTNTSKEMMAFS 69 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCC-----------CSEGGGSTT-B-SS-GGGSCCT
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCC-----------CCccccccceEEeeCchHhcCC
Confidence 47999999999999999999999999999999999999999742210 0124689999999999999999
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC----CcEEEEEeecCCceEEEEeCE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES----NKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~----~~~~v~~~~g~~~~~~~~~d~ 157 (354)
++|++. +.+.||++.++.+|++.+++++++..+++++++|+++++.++ +.|.|++.++ +..++..||+
T Consensus 70 dfp~p~-------~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~-g~~~~~~fD~ 141 (531)
T PF00743_consen 70 DFPFPE-------DYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND-GKEETEEFDA 141 (531)
T ss_dssp TS-HCC-------CCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT-TEEEEEEECE
T ss_pred CcCCCC-------CCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC-CeEEEEEeCe
Confidence 999865 356799999999999999999999989999999999998653 5799988653 3445678999
Q ss_pred EEEeeCCCCCcccCC--CCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----
Q 018550 158 VVVCNGHFSVPRLAQ--VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (354)
Q Consensus 158 vIlAtG~~s~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---- 231 (354)
||+|||+++.|++|. ++|++.|.|.++|+..|+++..+++|+|+|||+|.||+|+|.+|++.+++|++..|++.
T Consensus 142 VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~p 221 (531)
T PF00743_consen 142 VVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLP 221 (531)
T ss_dssp EEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------
T ss_pred EEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccc
Confidence 999999999999996 99999999999999999999999999999999999999999999999999999988874
Q ss_pred --------------------------ccccccC------------------------------------CCCCCeEEecc
Q 018550 232 --------------------------DETHEKQ------------------------------------PGYDNMWLHSM 249 (354)
Q Consensus 232 --------------------------~~~~~~l------------------------------------~~~~~~~~~~~ 249 (354)
....+.+ ...+++.....
T Consensus 222 r~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~ 301 (531)
T PF00743_consen 222 RYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPD 301 (531)
T ss_dssp -----------------------------------------------------------------------------EE-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000000 01233556677
Q ss_pred eeEEecCCcEEEccCcEE-ecCEEEEcccCCCccCc
Q 018550 250 VERANEDGTVVFRNGRVV-SADVIMHCTGLTGTSTT 284 (354)
Q Consensus 250 v~~v~~~~~v~~~~g~~~-~~D~vi~a~G~~~~~p~ 284 (354)
|+++.+++ |+++||+.+ ++|.||+|||+..++|.
T Consensus 302 I~~~~~~~-v~F~DGs~~e~vD~II~~TGY~~~fpF 336 (531)
T PF00743_consen 302 IKRFTENS-VIFEDGSTEEDVDVIIFCTGYKFSFPF 336 (531)
T ss_dssp EEEE-SSE-EEETTSEEEEE-SEEEE---EE---TT
T ss_pred cccccccc-ccccccccccccccccccccccccccc
Confidence 77887766 999999775 69999999999966653
No 3
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-36 Score=272.66 Aligned_cols=268 Identities=46% Similarity=0.816 Sum_probs=223.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
|.++|+|||||+|||++|+.|.++|++++++||.+.+||.|.+.+... ..++..|..+..+.|+.++++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~-----------~~~ss~Y~~l~tn~pKe~~~~ 73 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE-----------VVHSSVYKSLRTNLPKEMMGY 73 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc-----------ccccchhhhhhccCChhhhcC
Confidence 368999999999999999999999999999999999999999853322 345667999999999999999
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
+++|+... ....||++.++.+||+++++++++..+++++++|..++...++.|.|.+.+..+...+..||.|++
T Consensus 74 ~dfpf~~~------~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvV 147 (448)
T KOG1399|consen 74 SDFPFPER------DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVV 147 (448)
T ss_pred CCCCCccc------CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEE
Confidence 99999764 455679999999999999999999988999999999988664699999988654346889999999
Q ss_pred eeCCCCCcccCCCCC--CCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec--CCccccc
Q 018550 161 CNGHFSVPRLAQVPG--IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS--VADETHE 236 (354)
Q Consensus 161 AtG~~s~~~~p~~~g--~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~--~~~~~~~ 236 (354)
|||++..|++|.++| .+.|.|+.+|++.|+.++.+.+++|+|||.|.||+|++.++++.+++|.+..++ .......
T Consensus 148 ctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~ 227 (448)
T KOG1399|consen 148 CTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPE 227 (448)
T ss_pred cccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccc
Confidence 999986699999998 668999999999999999999999999999999999999999998888888651 0011111
Q ss_pred cCCCCCCeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccc
Q 018550 237 KQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLF 287 (354)
Q Consensus 237 ~l~~~~~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~ 287 (354)
. . .........|..+.+++.+.+.++....+|.||+|||+...+|..+-
T Consensus 228 ~-~-~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~ 276 (448)
T KOG1399|consen 228 I-L-GENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLET 276 (448)
T ss_pred e-e-ecceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceecc
Confidence 1 1 11333333488888888566666777889999999999977775543
No 4
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.5e-35 Score=265.96 Aligned_cols=306 Identities=22% Similarity=0.264 Sum_probs=210.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccccc-ccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (354)
.+|++|||+||+|..+|..+++.|.++.++|+...+||+|.+ +||+|.|.+++.... ..+.+.........
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln--------~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~ 75 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN--------VGCIPSKALLHAAEVIEEARHAAKEYGISA 75 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe--------eCccccHHHHHHHHHHHHHhhcccccceec
Confidence 589999999999999999999999999999998789999999 599999998886654 44443322111111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
..- -.++.++.++.+ ...+..+++ +.. .+..-+ +..+|.+... .
T Consensus 76 ~~~---------------~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~--vi~-G~a~f~-----~~~~v~V~~~--~ 130 (454)
T COG1249 76 EVP---------------KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVD--VIR-GEARFV-----DPHTVEVTGE--D 130 (454)
T ss_pred CCC---------------CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCE--EEE-EEEEEC-----CCCEEEEcCC--C
Confidence 110 011133333333 333333444 332 111111 2234444432 1
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.++++++++|+||| |+|+.|+.++.+.. ..+.+....... ..|++++|||||++|+|+|+.+++.|.+||++++.
T Consensus 131 ~~~~~a~~iiIATG--S~p~~~~~~~~~~~--~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~ 205 (454)
T COG1249 131 KETITADNIIIATG--SRPRIPPGPGIDGA--RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERG 205 (454)
T ss_pred ceEEEeCEEEEcCC--CCCcCCCCCCCCCC--eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 25899999999999 99999998887762 234443333333 57899999999999999999999999999999998
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCc--EEecCEEEEcccCCCccCccccc--Cch
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGR--VVSADVIMHCTGLTGTSTTTLFL--KPM 291 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~--~~~~D~vi~a~G~~~~~p~~~~l--~~~ 291 (354)
+. +...+.|++.+ +++.++.++.++.++. +.+++|. ++.+|.+++|+|++ ||++-| +..
T Consensus 206 ~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~---Pn~~~LgLe~~ 282 (454)
T COG1249 206 DRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK---PNTDGLGLENA 282 (454)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc---cCCCCCChhhc
Confidence 86 22334445544 7889999999985542 6667775 78899999999999 766632 222
Q ss_pred hhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhh
Q 018550 292 ALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCF 349 (354)
Q Consensus 292 ~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (354)
+.. ...|||+|||+.. +..|....+.++.+... .....+.+|.-++|.||+..
T Consensus 283 Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g~~~-----~~~d~~~iP~~ift~Peia~ 357 (454)
T COG1249 283 GVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKR-----TPIDYRLIPSVVFTDPEIAS 357 (454)
T ss_pred CceECCCCCEEeCCccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhCCCC-----CcCcccCCCEEEECCCccee
Confidence 221 1349999999763 46677778888876222 11233556667888999988
Q ss_pred hccc
Q 018550 350 LHKT 353 (354)
Q Consensus 350 ~~~~ 353 (354)
.+.|
T Consensus 358 VGlt 361 (454)
T COG1249 358 VGLT 361 (454)
T ss_pred eeCC
Confidence 8876
No 5
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=6.4e-33 Score=255.89 Aligned_cols=310 Identities=16% Similarity=0.180 Sum_probs=198.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+||||||+|++||..++++|.+|+|+|+ +.+||+|.+. +|.|.+.++..........+.+.......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~~~~~g~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIR--------GCVPKKLMVYGSTFGGEFEDAAGYGWTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecC--------CcCchHHHHHHHHHHHHHhhhHhcCcCCC
Confidence 58999999999999999999999999999998 4899999984 99999987765433222222211111000
Q ss_pred --CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 82 --AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.+.|..-.. ........+.++++..+++.+++ +.. .++..++. ....+. .++ ..+.||+||
T Consensus 73 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~gV~--~~~-g~~~~v~~---~~v~v~-~~g----~~~~~d~lI 135 (446)
T TIGR01424 73 KARFDWKKLLQ------KKDDEIARLSGLYKRLLANAGVE--LLE-GRARLVGP---NTVEVL-QDG----TTYTAKKIL 135 (446)
T ss_pred CCCcCHHHHHH------HHHHHHHHHHHHHHHHHHhCCcE--EEE-EEEEEecC---CEEEEe-cCC----eEEEcCEEE
Confidence 011100000 00000023444555556666777 554 46666543 333332 222 378999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----c--
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----D-- 232 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-----~-- 232 (354)
+||| +.|..|+++|.+.. ..+...... ...+++++|||+|.+|+|+|..+++.|.+|+++.+.+. +
T Consensus 136 iATG--s~p~~p~i~G~~~~----~~~~~~~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~ 208 (446)
T TIGR01424 136 IAVG--GRPQKPNLPGHELG----ITSNEAFHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDD 208 (446)
T ss_pred EecC--CcCCCCCCCCccce----echHHhhcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHH
Confidence 9999 88998988886431 121111111 12468999999999999999999999999999998764 1
Q ss_pred ---cccccCCCCC-CeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCccccc--Cchhhh---------
Q 018550 233 ---ETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLFL--KPMALL--------- 294 (354)
Q Consensus 233 ---~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~~--------- 294 (354)
...+.+++.+ +++.++.++++..++ . +.+.+++++++|.||+|+|+. ||++.+ ...+..
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~---pn~~~l~l~~~g~~~~~~G~i~v 285 (446)
T TIGR01424 209 MRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRS---PNTKGLGLEAAGVELNDAGAIAV 285 (446)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCC---cCCCcCCccccCeEECCCCcEEe
Confidence 1223344455 889999999997432 2 556678889999999999999 666542 222111
Q ss_pred -------hceeeeecccchh------hHHHHHHHhhhccCCCc-ccccCCCCCccccCCchhhhhhhhhhccc
Q 018550 295 -------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHR-RLSLSPSLNSRASGLPVFCLVELCFLHKT 353 (354)
Q Consensus 295 -------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (354)
..+|||+|||+.. +..|+...+.++.+... .+.+ ..++..+++.+|+.+.+.|
T Consensus 286 d~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~~~~~~~~------~~~p~~if~~p~ia~vG~t 352 (446)
T TIGR01424 286 DEYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGNNPTKFDH------DLIATAVFSQPPLGTVGLT 352 (446)
T ss_pred CCCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcCCCCccCc------CCCCeEEeCCchhEEEECC
Confidence 2349999999962 45667777778765332 2222 2233335555566555544
No 6
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-32 Score=236.85 Aligned_cols=252 Identities=25% Similarity=0.312 Sum_probs=199.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCc-EEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+.+||+||||||||++||..+++.+.+ ++++|+ ..+|+......... .
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~~ve------------------------------n 50 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTTDVE------------------------------N 50 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccceeec------------------------------C
Confidence 358999999999999999999999998 555555 56776655432111 1
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+++++... ...++++.+++.+..++.+ +.. .+|.+++..+ +.|.|.+.++ ++++++||
T Consensus 51 ypg~~~~~-------------~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~-~~F~v~t~~~-----~~~ak~vI 108 (305)
T COG0492 51 YPGFPGGI-------------LGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEG-GPFKVKTDKG-----TYEAKAVI 108 (305)
T ss_pred CCCCccCC-------------chHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecC-ceEEEEECCC-----eEEEeEEE
Confidence 22222211 1278889999999999988 555 7888887765 3788888876 59999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----cccc
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH 235 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~ 235 (354)
+||| ..++.|.+++..++.++.++.+..++. .+++++|+|||||.+|+|.|..|.+.+++|++++|++. +...
T Consensus 109 iAtG--~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~ 185 (305)
T COG0492 109 IATG--AGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILV 185 (305)
T ss_pred ECcC--CcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHH
Confidence 9999 888999888877888899999999998 88999999999999999999999999999999999886 3344
Q ss_pred ccCCCC--CCeEEecceeEEecCC--cEEEccC----cEEecCEEEEcccCCCccCcccccCchhhh-------------
Q 018550 236 EKQPGY--DNMWLHSMVERANEDG--TVVFRNG----RVVSADVIMHCTGLTGTSTTTLFLKPMALL------------- 294 (354)
Q Consensus 236 ~~l~~~--~~~~~~~~v~~v~~~~--~v~~~~g----~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------- 294 (354)
+++.+. ..+++++.|+++.+++ .|++.+. +++++|-++.+.|.. |+++|+++....
T Consensus 186 ~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~---p~~~~~~~~~~~~~~g~I~v~~~~~ 262 (305)
T COG0492 186 ERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHL---PNTELLKGLGVLDENGYIVVDEEME 262 (305)
T ss_pred HHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCC---CchHHHhhccccCCCCcEEcCCCcc
Confidence 455444 4889999999999864 3777763 478899999999999 998898775542
Q ss_pred --hceeeeecccchhhHHH
Q 018550 295 --LWMTIVLGHCTSTFFRQ 311 (354)
Q Consensus 295 --~~~i~a~GD~~~~~~~~ 311 (354)
..+|||+||+.....+|
T Consensus 263 TsvpGifAaGDv~~~~~rq 281 (305)
T COG0492 263 TSVPGIFAAGDVADKNGRQ 281 (305)
T ss_pred cCCCCEEEeEeeccCcccE
Confidence 23499999999976554
No 7
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.6e-32 Score=255.17 Aligned_cols=306 Identities=19% Similarity=0.189 Sum_probs=196.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccccc-ccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (354)
++||+||||||+|+++|..|+++|.+|+|||+++.+||+|.+. +|.|.+.+...... ..+.. .+. +
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~--------gcipsk~l~~~~~~~~~~~~-~~~----~ 71 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT--------GTIPSKALREAVLRLIGFNQ-NPL----Y 71 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc--------CCCCHHHHHHHHHHHHHHhh-hhh----h
Confidence 4799999999999999999999999999999988899999874 78887655433221 11110 000 0
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
..++.. ...++.++.+ ++.+.+.+.+++ ++.+ ++..++ . +.+.+...++.
T Consensus 72 ~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~--~-~~~~v~~~~g~-- 132 (461)
T PRK05249 72 SSYRVK-----------LRITFADLLARADHVINKQVEVRRGQYERNRVD--LIQG-RARFVD--P-HTVEVECPDGE-- 132 (461)
T ss_pred cccCCc-----------CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEec--C-CEEEEEeCCCc--
Confidence 011100 0011233332 334445556666 5553 344432 2 45566554432
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
...+.||+||+||| +.|+.|+.++... ...+++..... ....+++++|||+|++|+|+|..|++.|.+|+++.++
T Consensus 133 ~~~~~~d~lviATG--s~p~~p~~~~~~~--~~v~~~~~~~~-~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~ 207 (461)
T PRK05249 133 VETLTADKIVIATG--SRPYRPPDVDFDH--PRIYDSDSILS-LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR 207 (461)
T ss_pred eEEEEcCEEEEcCC--CCCCCCCCCCCCC--CeEEcHHHhhc-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 24789999999999 8888887665432 12233222222 2235799999999999999999999999999999997
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCccccc--Cchhh
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLFL--KPMAL 293 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~ 293 (354)
+. +.+.+.+++.+ +++.++.++++..++ . +++.+|+++++|.|++|+|++ ||++++ ...+.
T Consensus 208 ~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~---p~~~~l~l~~~g~ 284 (461)
T PRK05249 208 DRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT---GNTDGLNLENAGL 284 (461)
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC---ccccCCCchhhCc
Confidence 74 12233344445 889999999987432 2 455678889999999999999 776643 22111
Q ss_pred ----------------hhceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhc
Q 018550 294 ----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLH 351 (354)
Q Consensus 294 ----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (354)
...+|||+|||+.. ...++...+.++.+......+ +. ++--+++.+|+.+.+
T Consensus 285 ~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~-----~p~~i~~~p~ia~vG 358 (461)
T PRK05249 285 EADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLI-ED-----IPTGIYTIPEISSVG 358 (461)
T ss_pred EecCCCcEeeCCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCCccccc-CC-----CCeEEECCCcceEec
Confidence 12459999999863 356666777787654332222 22 222345555666666
Q ss_pred cc
Q 018550 352 KT 353 (354)
Q Consensus 352 ~~ 353 (354)
.|
T Consensus 359 ~t 360 (461)
T PRK05249 359 KT 360 (461)
T ss_pred CC
Confidence 55
No 8
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.1e-32 Score=256.22 Aligned_cols=307 Identities=17% Similarity=0.182 Sum_probs=197.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEee---------CCCccceeecCCCCCCCCCCCCCCCCcccccccccchhc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~---------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (354)
.+||+||||||+|+.+|..++++|.+|.|||+ .+.+||+|.+. ||.|.+.++...........
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~--------GciPsK~l~~~a~~~~~~~~ 96 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIR--------GCVPKKILVYGATFGGEFED 96 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeecc--------CchhHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999996 35799999884 99999887665433221111
Q ss_pred cccccccccCCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE
Q 018550 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKV 141 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v 141 (354)
........... .-.++..+.++ +++.....+++ +.. .++..++. ..+.+
T Consensus 97 ~~~~G~~~~~~--------------~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~i~-g~a~~vd~---~~v~V 156 (499)
T PLN02507 97 AKNYGWEINEK--------------VDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK--LYE-GEGKIVGP---NEVEV 156 (499)
T ss_pred HHhcCcccCCC--------------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEE-EEEEEecC---CEEEE
Confidence 11111100000 00112333322 23333344555 433 45555533 55667
Q ss_pred EEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCC
Q 018550 142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221 (354)
Q Consensus 142 ~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~ 221 (354)
+..++. ...+.||+||+||| +.|+.|.++|.+.. ..+....... ..+++++|||+|++|+|+|..+++.|+
T Consensus 157 ~~~~g~--~~~~~~d~LIIATG--s~p~~p~ipG~~~~----~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~ 227 (499)
T PLN02507 157 TQLDGT--KLRYTAKHILIATG--SRAQRPNIPGKELA----ITSDEALSLE-ELPKRAVVLGGGYIAVEFASIWRGMGA 227 (499)
T ss_pred EeCCCc--EEEEEcCEEEEecC--CCCCCCCCCCccce----echHHhhhhh-hcCCeEEEECCcHHHHHHHHHHHHcCC
Confidence 665543 34689999999999 88998988886431 1221111111 246899999999999999999999999
Q ss_pred EEEEEEecCC-----cc-----ccccCCCCC-CeEEecceeEEecC-Cc--EEEccCcEEecCEEEEcccCCCccCcccc
Q 018550 222 EVHIASRSVA-----DE-----THEKQPGYD-NMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGLTGTSTTTLF 287 (354)
Q Consensus 222 ~v~~~~r~~~-----~~-----~~~~l~~~~-~~~~~~~v~~v~~~-~~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~ 287 (354)
+|+++++.+. +. ..+.|++.+ +++.++.|+++..+ +. +.+.+|+++++|.|++|+|++ ||+++
T Consensus 228 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~---pn~~~ 304 (499)
T PLN02507 228 TVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA---PNTKR 304 (499)
T ss_pred eEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCC---CCCCC
Confidence 9999999763 11 122344455 89999999999743 22 555677889999999999999 66665
Q ss_pred c--Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhh
Q 018550 288 L--KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFC 343 (354)
Q Consensus 288 l--~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (354)
+ +..+.. ..+|||+|||+.. ...|+...+.++.+..... +. ...++..+++
T Consensus 305 l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~---~~--~~~~p~~if~ 379 (499)
T PLN02507 305 LNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTK---PD--YENVACAVFC 379 (499)
T ss_pred CCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCc---CC--CCCCCeEEEC
Confidence 3 222211 1339999999972 3566667777776533211 11 1122333555
Q ss_pred hhhhhhhccc
Q 018550 344 LVELCFLHKT 353 (354)
Q Consensus 344 ~~~~~~~~~~ 353 (354)
.+|+.+.+.|
T Consensus 380 ~p~ia~vGlt 389 (499)
T PLN02507 380 IPPLSVVGLS 389 (499)
T ss_pred CCccEEEeCC
Confidence 5666555544
No 9
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.2e-32 Score=253.85 Aligned_cols=302 Identities=17% Similarity=0.205 Sum_probs=192.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+||||||+|+++|..|+++|.+|+|+|++ .+||+|.+. +|.|.+.++..........+.+. +++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~~~~--~g~~ 70 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNV--------GCVPKKVMWYASDLAERMHDAAD--YGFY 70 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceecc--------CcCccHHHHHHHHHHHHHhHHhh--cCcc
Confidence 589999999999999999999999999999995 799999984 99999877665432222222111 1111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.. . . .-.++.++. +.+...+++.+++ ++.++.+. . +..++.+. +
T Consensus 71 ~~-~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~-~-----~~~~v~v~-~---- 125 (450)
T TIGR01421 71 QN-L-E----------NTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVD--VIFGHARF-T-----KDGTVEVN-G---- 125 (450)
T ss_pred cC-C-c----------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE-c-----cCCEEEEC-C----
Confidence 00 0 0 001112222 2233444455666 66654331 1 12234442 2
Q ss_pred EEEEeCEEEEeeCCCCCcccC-CCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 151 EEETFDAVVVCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
..+.||+||+||| +.|+.| .++|.+.. ..+...... ...+++++|||+|++|+|+|..|++.|++|+++.+.
T Consensus 126 ~~~~~d~vIiAtG--s~p~~p~~i~g~~~~----~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~ 198 (450)
T TIGR01421 126 RDYTAPHILIATG--GKPSFPENIPGAELG----TDSDGFFAL-EELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRH 198 (450)
T ss_pred EEEEeCEEEEecC--CCCCCCCCCCCCcee----EcHHHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 2789999999999 888888 78876421 122122111 124689999999999999999999999999999987
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecC--C--cEEEccC-cEEecCEEEEcccCCCccCccccc--Cch
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANED--G--TVVFRNG-RVVSADVIMHCTGLTGTSTTTLFL--KPM 291 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~~~~g-~~~~~D~vi~a~G~~~~~p~~~~l--~~~ 291 (354)
+. +...+.|++.+ +++.++.++++..+ + .+++++| +++++|.||+|+|++ ||++++ ...
T Consensus 199 ~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~---pn~~~l~l~~~ 275 (450)
T TIGR01421 199 ERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRK---PNTKGLGLENV 275 (450)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCC---cCcccCCcccc
Confidence 64 12233444555 88999999999753 2 2566677 579999999999999 776643 221
Q ss_pred hh----------------hhceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhh
Q 018550 292 AL----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCF 349 (354)
Q Consensus 292 ~~----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (354)
+. ...+|||+|||+.. ...|+...+.++.+...... .....++.-+++.+|+..
T Consensus 276 g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~----~~~~~~p~~~f~~p~ia~ 351 (450)
T TIGR01421 276 GIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDK----LDYNNVPTVVFSHPPIGT 351 (450)
T ss_pred CcEECCCCcEEeCCCCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcCCCCCc----cCcccCCeEEeCCCceEE
Confidence 11 12459999999873 34566666777754321111 111223334555666655
Q ss_pred hccc
Q 018550 350 LHKT 353 (354)
Q Consensus 350 ~~~~ 353 (354)
.+.|
T Consensus 352 vGlt 355 (450)
T TIGR01421 352 IGLT 355 (450)
T ss_pred EeCC
Confidence 5543
No 10
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=9.2e-32 Score=236.88 Aligned_cols=247 Identities=23% Similarity=0.311 Sum_probs=184.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||++|+++|..|++.|++|+|||+++ +||.|..... ...++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~------------------------------~~~~~~ 49 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTE------------------------------VENYPG 49 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccc------------------------------ccccCC
Confidence 589999999999999999999999999999875 6776654210 000111
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
++. .....++..++.+.+++++++ +++ ++|++++..+ +.|.+.+.++. ++.||+||+||
T Consensus 50 ~~~-------------~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~-~~~~v~~~~~~----~~~~d~liiAt 108 (300)
T TIGR01292 50 FPE-------------GISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSD-RPFKVKTGDGK----EYTAKAVIIAT 108 (300)
T ss_pred CCC-------------CCChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecC-CeeEEEeCCCC----EEEeCEEEECC
Confidence 110 012267888999999999988 777 8999998876 77888876653 89999999999
Q ss_pred CCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----ccccccC
Q 018550 163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQ 238 (354)
Q Consensus 163 G~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~~l 238 (354)
| +.++.|.+||...+.+...+.....+.....+++++|||+|.+|+|+|..|++.+++|+++.+.+. +...+.+
T Consensus 109 G--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l 186 (300)
T TIGR01292 109 G--ASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRL 186 (300)
T ss_pred C--CCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHH
Confidence 9 778888888876654444444434344445789999999999999999999999999999999774 2233444
Q ss_pred CCC-C-CeEEecceeEEecCCc---EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhh---------------
Q 018550 239 PGY-D-NMWLHSMVERANEDGT---VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMAL--------------- 293 (354)
Q Consensus 239 ~~~-~-~~~~~~~v~~v~~~~~---v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~--------------- 293 (354)
.+. + +++.++.++++..++. +++.+ + .++++|++++|+|++ |+.++++....
T Consensus 187 ~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~---~~~~~l~~~~~~~~~g~i~v~~~~~t 263 (300)
T TIGR01292 187 RKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHE---PNTELLKGLLELDEGGYIVTDEGMRT 263 (300)
T ss_pred HhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCC---CChHHHHHhheecCCCcEEECCCCcc
Confidence 444 4 7888999999986543 44432 3 578999999999999 77666654311
Q ss_pred hhceeeeecccch
Q 018550 294 LLWMTIVLGHCTS 306 (354)
Q Consensus 294 ~~~~i~a~GD~~~ 306 (354)
...+||++|||+.
T Consensus 264 ~~~~vya~GD~~~ 276 (300)
T TIGR01292 264 SVPGVFAAGDVRD 276 (300)
T ss_pred CCCCEEEeecccC
Confidence 1245999999997
No 11
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.3e-32 Score=251.86 Aligned_cols=307 Identities=19% Similarity=0.264 Sum_probs=199.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||+|+++|..|++.|.+|+|||++ .+||+|.+ .||.|.+.++.+..........+.. ++++
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n--------~GciPsk~l~~~a~~~~~~~~~~~~-~g~~ 75 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN--------IGCVPSKIMIRAAHIAHLRRESPFD-DGLS 75 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec--------CCccccHHHHHHHHHHHHHhhcccc-CCcc
Confidence 479999999999999999999999999999985 79999987 3999998776654433322222100 0111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------------CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
.. ..-+++..+.++.++....+ +++ +. ..++..++. +.+++++.++.
T Consensus 76 ~~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~-~g~v~~id~---~~~~V~~~~g~- 135 (468)
T PRK14694 76 AQ-------------APVVDRSALLAQQQARVEELRESKYQSILRENAAIT--VL-NGEARFVDE---RTLTVTLNDGG- 135 (468)
T ss_pred cC-------------CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeE--EE-EEEEEEecC---CEEEEEecCCC-
Confidence 00 00012345554444433221 333 33 345666643 66888877653
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.|+.|+++|.+.. ..+++...... ...+++++|||+|++|+|+|..|++.|.+|+++.+
T Consensus 136 -~~~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~ 209 (468)
T PRK14694 136 -EQTVHFDRAFIGTG--ARPAEPPVPGLAET--PYLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLAR 209 (468)
T ss_pred -eEEEECCEEEEeCC--CCCCCCCCCCCCCC--ceEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 24799999999999 89999999997653 12222221111 12468999999999999999999999999999987
Q ss_pred cCC---------ccccccCCCCC-CeEEecceeEEecCCc-EEE-ccCcEEecCEEEEcccCCCccCcccccC--chhhh
Q 018550 229 SVA---------DETHEKQPGYD-NMWLHSMVERANEDGT-VVF-RNGRVVSADVIMHCTGLTGTSTTTLFLK--PMALL 294 (354)
Q Consensus 229 ~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~-v~~-~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~~ 294 (354)
... +...+.+++.+ +++.++.+++++.++. +.+ .++.++++|.||+|+|.. ||++++. ..+..
T Consensus 210 ~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~---pn~~~l~l~~~g~~ 286 (468)
T PRK14694 210 SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRT---PNTENLNLESIGVE 286 (468)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCC---CCcCCCCchhcCcc
Confidence 532 12233344455 8889999999975543 332 234579999999999999 7766542 11111
Q ss_pred ---------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhccc
Q 018550 295 ---------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLHKT 353 (354)
Q Consensus 295 ---------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (354)
..+|||+|||+.. ...++...+.++.+.....++ +.++--+++.+|+...+.|
T Consensus 287 ~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~~~~~~------~~~p~~~~~~p~~a~vGlt 360 (468)
T PRK14694 287 TERGAIRIDEHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDL------SAMPEVIFTDPQVATVGLS 360 (468)
T ss_pred cCCCeEeeCCCcccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCCccccc------CCCCeEEECCCCeEEeeCC
Confidence 2349999999863 345666677777654433222 1222225566666665554
No 12
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=3.7e-32 Score=251.62 Aligned_cols=275 Identities=17% Similarity=0.228 Sum_probs=186.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhc-cccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN-LPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (354)
.+||+||||||+|+++|..|+++|.+|+|||+. .+||+|.+ .+|.|.+.++........... .+. +++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n--------~gciP~k~l~~~~~~~~~~~~~~~~--~g~ 72 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN--------VGCVPKKLMWYGAQIAEAFHDYAPG--YGF 72 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc--------cCcchHHHHHHHHHHHHHHHhHHHh--cCC
Confidence 479999999999999999999999999999985 89999987 499999877665433222222 111 111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHH-----------HHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEV-----------LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.. ... -.++..+ .+.+.+...+.+++ +..+ ++..++ ..++++ ++
T Consensus 73 ~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~v~-----~~~v~~-~g--- 127 (450)
T PRK06116 73 DV-TEN------------KFDWAKLIANRDAYIDRLHGSYRNGLENNGVD--LIEG-FARFVD-----AHTVEV-NG--- 127 (450)
T ss_pred CC-CCC------------CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc-----CCEEEE-CC---
Confidence 00 000 0011222 22333344455676 5553 454442 234555 33
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
..+.||+||+||| +.|+.|+++|.+. .+++...... ...+++++|||+|.+|+|+|..|++.|.+|+++.+.
T Consensus 128 -~~~~~d~lViATG--s~p~~p~i~g~~~----~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 199 (450)
T PRK06116 128 -ERYTADHILIATG--GRPSIPDIPGAEY----GITSDGFFAL-EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG 199 (450)
T ss_pred -EEEEeCEEEEecC--CCCCCCCCCCcce----eEchhHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 3799999999999 8899998888653 2222222221 224689999999999999999999999999999987
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecC--C--cEEEccCcEEecCEEEEcccCCCccCccccc--Cchh
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGLTGTSTTTLFL--KPMA 292 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~ 292 (354)
+. ....+.+++.+ +++.++.|+++..+ + .+.+.+|+++++|.||+|+|++ |+++.+ ...+
T Consensus 200 ~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~---p~~~~l~l~~~g 276 (450)
T PRK06116 200 DAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGRE---PNTDGLGLENAG 276 (450)
T ss_pred CCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCC---cCCCCCCchhcC
Confidence 64 12233444555 88999999999743 3 2566788889999999999999 666642 2211
Q ss_pred h----------------hhceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 293 L----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 293 ~----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
. ...+|||+|||+.. ...|+...+.++.+..
T Consensus 277 ~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 329 (450)
T PRK06116 277 VKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNK 329 (450)
T ss_pred ceECCCCcEecCCCCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCCC
Confidence 1 12459999999852 3566777788886643
No 13
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.6e-31 Score=236.93 Aligned_cols=249 Identities=16% Similarity=0.235 Sum_probs=184.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|+++|.++++||+. ..||.+...... .
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~---------------------------------~ 51 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEV---------------------------------E 51 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCceE---------------------------------C
Confidence 479999999999999999999999999999964 678777652110 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+++.. ....+...+.+++.+....++.. ++. .+|..++..+ +.|+++...+ .+.||+||+|
T Consensus 52 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~v~~~~-~~~~v~~~~~-----~~~~d~vilA 112 (321)
T PRK10262 52 NWPGD----------PNDLTGPLLMERMHEHATKFETE--IIF-DHINKVDLQN-RPFRLTGDSG-----EYTCDALIIA 112 (321)
T ss_pred CCCCC----------CCCCCHHHHHHHHHHHHHHCCCE--EEe-eEEEEEEecC-CeEEEEecCC-----EEEECEEEEC
Confidence 11110 01122367788888888888776 555 3677787765 7777765432 6899999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--------cc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--------DE 233 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--------~~ 233 (354)
|| +.|+.|++||.+.+.+..++.+..++.....+++++|||+|.+|+|+|..|++.+++|+++++++. +.
T Consensus 113 tG--~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~ 190 (321)
T PRK10262 113 TG--ASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR 190 (321)
T ss_pred CC--CCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHH
Confidence 99 788889999977666666666666555556789999999999999999999999999999999763 22
Q ss_pred ccccCCCCC-CeEEecceeEEecCC----cEEEccC------cEEecCEEEEcccCCCccCcccccCch-----------
Q 018550 234 THEKQPGYD-NMWLHSMVERANEDG----TVVFRNG------RVVSADVIMHCTGLTGTSTTTLFLKPM----------- 291 (354)
Q Consensus 234 ~~~~l~~~~-~~~~~~~v~~v~~~~----~v~~~~g------~~~~~D~vi~a~G~~~~~p~~~~l~~~----------- 291 (354)
.++.+++.+ +++.++.++++.+++ .|++.++ +++++|.||+++|++ ||.+++...
T Consensus 191 ~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~---p~~~l~~~~l~~~~g~i~vd 267 (321)
T PRK10262 191 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS---PNTAIFEGQLELENGYIKVQ 267 (321)
T ss_pred HHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc---cChhHhhccccccCCEEEEC
Confidence 334455555 888999999998654 2555442 479999999999999 666654310
Q ss_pred --------hhhhceeeeecccchhh
Q 018550 292 --------ALLLWMTIVLGHCTSTF 308 (354)
Q Consensus 292 --------~~~~~~i~a~GD~~~~~ 308 (354)
.....+|||+|||+...
T Consensus 268 ~~~~~~~~~t~~~~VyA~GD~~~~~ 292 (321)
T PRK10262 268 SGIHGNATQTSIPGVFAAGDVMDHI 292 (321)
T ss_pred CCCcccccccCCCCEEECeeccCCC
Confidence 11124599999999643
No 14
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=7.2e-32 Score=250.00 Aligned_cols=305 Identities=16% Similarity=0.146 Sum_probs=191.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (354)
++||+||||||+|+.+|..|+++|.+|+|+|+.+.+||+|.+. +|.|.+.++.... +..+. ........+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~--------gciP~K~l~~~a~~~~~~~-~~~~~g~~~ 74 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNV--------GCIPSKALLHVAKVIEEAK-ALAEHGIVF 74 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCC--------CcccHHHHHHHHHHHHHHh-hhhhcCccc
Confidence 5899999999999999999999999999999977899999884 8999987765432 22221 111111110
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.. ...++..+.++.. ..++..+++ +.. .++..++ . +...+...++ .
T Consensus 75 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~-g~a~~~~--~-~~v~v~~~~g--~ 131 (471)
T PRK06467 75 GE---------------PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVT--VVN-GLGKFTG--G-NTLEVTGEDG--K 131 (471)
T ss_pred CC---------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEcc--C-CEEEEecCCC--c
Confidence 00 0011233333332 233444666 554 3333332 2 3444544333 1
Q ss_pred eEEEEeCEEEEeeCCCCCccc-CCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 150 VEEETFDAVVVCNGHFSVPRL-AQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| ++|+. |.+++... ..+.+....... ..+++++|||+|++|+|+|..|++.|.+|+++.+
T Consensus 132 ~~~~~~d~lViATG--s~p~~~p~~~~~~~---~v~~~~~~~~~~-~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~ 205 (471)
T PRK06467 132 TTVIEFDNAIIAAG--SRPIQLPFIPHDDP---RIWDSTDALELK-EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM 205 (471)
T ss_pred eEEEEcCEEEEeCC--CCCCCCCCCCCCCC---cEEChHHhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEec
Confidence 24799999999999 77864 44444322 223332222221 2468999999999999999999999999999998
Q ss_pred cCC-----c-----cccccCCCCCCeEEecceeEEecCC-c--EEEccC----cEEecCEEEEcccCCCccCcccccC--
Q 018550 229 SVA-----D-----ETHEKQPGYDNMWLHSMVERANEDG-T--VVFRNG----RVVSADVIMHCTGLTGTSTTTLFLK-- 289 (354)
Q Consensus 229 ~~~-----~-----~~~~~l~~~~~~~~~~~v~~v~~~~-~--v~~~~g----~~~~~D~vi~a~G~~~~~p~~~~l~-- 289 (354)
.+. + ...+.+++..++++++.++.++.++ . +.++++ +++++|.||+|+|++ ||++++.
T Consensus 206 ~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~---pn~~~l~~~ 282 (471)
T PRK06467 206 FDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRV---PNGKLLDAE 282 (471)
T ss_pred CCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccc---ccCCccChh
Confidence 764 1 2223343336788899999887432 2 444442 469999999999999 7776542
Q ss_pred chh----------------hhhceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhh
Q 018550 290 PMA----------------LLLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVEL 347 (354)
Q Consensus 290 ~~~----------------~~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (354)
..+ ....+|||+|||+.. ...++...+.++.+....+.+ .. ++--+++.+|+
T Consensus 283 ~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~~~~~~~--~~----~p~~~~~~p~i 356 (471)
T PRK06467 283 KAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDP--KV----IPSIAYTEPEV 356 (471)
T ss_pred hcCceECCCCcEeeCCCcccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCCCCCCCC--CC----CCeEEECCCce
Confidence 111 112459999999863 355666777777664333222 11 22224556666
Q ss_pred hhhccc
Q 018550 348 CFLHKT 353 (354)
Q Consensus 348 ~~~~~~ 353 (354)
.+.+.|
T Consensus 357 a~vGlt 362 (471)
T PRK06467 357 AWVGLT 362 (471)
T ss_pred eEEECC
Confidence 655544
No 15
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.6e-31 Score=248.35 Aligned_cols=307 Identities=17% Similarity=0.198 Sum_probs=193.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+|||+|++|+++|..|+++|.+|+++|+++.+||+|.+. ||.|.+.++....+.......+. +++.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~--------GciPsk~l~~~a~~~~~~~~~~~--~g~~ 85 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV--------GCVPSKILIRAAQLAHQQRSNPF--DGVE 85 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc--------cccccHHHHHHHHHHHHHhhccc--cCcc
Confidence 5899999999999999999999999999999987899999984 99999887765544333322221 1111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH------------Hh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR------------EF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
.. .+. .++..+..+...... .. +++ +.. .+. ...+.+.+.+...++.
T Consensus 86 ~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~-G~a---~f~~~~~v~v~~~~g~- 145 (479)
T PRK14727 86 AV-APS------------IDRGLLLHQQQARVEELRHAKYQSILDGNPALT--LLK-GYA---RFKDGNTLVVRLHDGG- 145 (479)
T ss_pred cC-CCc------------cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeE--EEE-EEE---EEecCCEEEEEeCCCc-
Confidence 00 000 012333222222211 11 233 222 122 2222255666655542
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.|+.|+++|.... ....+..... ....+++++|||+|++|+|+|..|++.|++|+++.+
T Consensus 146 -~~~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~ 219 (479)
T PRK14727 146 -ERVLAADRCLIATG--STPTIPPIPGLMDT--PYWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILAR 219 (479)
T ss_pred -eEEEEeCEEEEecC--CCCCCCCCCCcCcc--ceecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEc
Confidence 24799999999999 89999999987542 1122111111 122468999999999999999999999999999988
Q ss_pred cCC---------ccccccCCCCC-CeEEecceeEEecCC-cEEE-ccCcEEecCEEEEcccCCCccCccccc--Cchhhh
Q 018550 229 SVA---------DETHEKQPGYD-NMWLHSMVERANEDG-TVVF-RNGRVVSADVIMHCTGLTGTSTTTLFL--KPMALL 294 (354)
Q Consensus 229 ~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~v~~-~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~~ 294 (354)
... ....+.+++.+ +++.++.++++..++ .+.+ .++.++++|.||+|+|+. ||++++ +..+..
T Consensus 220 ~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~---pn~~~l~l~~~g~~ 296 (479)
T PRK14727 220 STLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRH---ANTHDLNLEAVGVT 296 (479)
T ss_pred CCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCC---CCccCCCchhhCce
Confidence 532 12233444555 888899999987433 2332 233579999999999999 776653 221111
Q ss_pred ----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhcc
Q 018550 295 ----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLHK 352 (354)
Q Consensus 295 ----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (354)
..+|||+|||+.. +..++...+.++.+....+.+ ...+.-.++.+|+.+.+.
T Consensus 297 ~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~------~~~p~~~~~~p~ia~vGl 370 (479)
T PRK14727 297 TDTSGAIVVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATLDL------SAMPAVIFTDPQVATVGL 370 (479)
T ss_pred ecCCCCEEECCCeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCCCccccc------ccCCcEEEecCceeeeeC
Confidence 1349999999963 345666777788765433322 112222455566665555
Q ss_pred c
Q 018550 353 T 353 (354)
Q Consensus 353 ~ 353 (354)
|
T Consensus 371 t 371 (479)
T PRK14727 371 S 371 (479)
T ss_pred C
Confidence 4
No 16
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-31 Score=247.84 Aligned_cols=283 Identities=18% Similarity=0.190 Sum_probs=183.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||+|+++|..|+++|.+|+|+|+.. +||+|.+. +|.|.+.++.............
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~--------gciP~k~l~~~~~~~~~~~~~~------- 67 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR--------GCIPSKALLHAAERADEARHSE------- 67 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec--------ccCCcHHHHHhhhHHHHHHHHH-------
Confidence 5899999999999999999999999999999975 99999874 8999887665443222111111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.+.+.. ....+.+..+.++ +...+++.+++ +..+ +++.++. ..+.+...++.
T Consensus 68 ~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~~---~~~~v~~~~~~--- 130 (462)
T PRK06416 68 DFGIKA--------ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVD--IIRG-EAKLVDP---NTVRVMTEDGE--- 130 (462)
T ss_pred hcCccc--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEccC---CEEEEecCCCc---
Confidence 111100 0001233445554 33344455666 5553 4444422 34445432221
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..+.||+||+||| +.|..| ||.+.......+....... ...+++++|||+|++|+|+|..|++.|.+|+++.+.+
T Consensus 131 ~~~~~d~lViAtG--s~p~~~--pg~~~~~~~v~~~~~~~~~-~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 131 QTYTAKNIILATG--SRPREL--PGIEIDGRVIWTSDEALNL-DEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred EEEEeCEEEEeCC--CCCCCC--CCCCCCCCeEEcchHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4799999999999 677654 3443211122222222221 2356899999999999999999999999999999876
Q ss_pred C----------ccccccCCCCC-CeEEecceeEEecCC-c--EEEccC---cEEecCEEEEcccCCCccCccccc--Cch
Q 018550 231 A----------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNG---RVVSADVIMHCTGLTGTSTTTLFL--KPM 291 (354)
Q Consensus 231 ~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g---~~~~~D~vi~a~G~~~~~p~~~~l--~~~ 291 (354)
. +...+.+++.+ +++.++.|+++..++ . +.+.++ +++++|.||+|+|++ |+++++ +..
T Consensus 206 ~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~---p~~~~l~l~~~ 282 (462)
T PRK06416 206 RILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR---PNTENLGLEEL 282 (462)
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc---cCCCCCCchhc
Confidence 4 11222344444 889999999998543 2 444555 679999999999999 666654 121
Q ss_pred h---------------hhhceeeeecccchh------hHHHHHHHhhhccCCCcc
Q 018550 292 A---------------LLLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 292 ~---------------~~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~ 325 (354)
+ ....+|||+|||+.. ...|+...+.++.+....
T Consensus 283 gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~ 337 (462)
T PRK06416 283 GVKTDRGFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNPHP 337 (462)
T ss_pred CCeecCCEEeECCCCccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCCCC
Confidence 1 112459999999862 356667778888764333
No 17
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=2.2e-31 Score=248.53 Aligned_cols=270 Identities=15% Similarity=0.218 Sum_probs=175.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+++||+|||||++|+.+|..+++.|.+|+|||++ .+||+|.+ .||+|.+.++..........+........
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln--------~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~ 117 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN--------VGCVPKKIMFNAASIHDILENSRHYGFDT 117 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc--------cCCCCCchhhhhcccHHHHHHHHhcCCCc
Confidence 3579999999999999999999999999999995 79999998 49999999887665433222222111110
Q ss_pred c-CCCCCccCCCCCCCCCCCCCHHHH----HHHHHHHHHHhCCcceEEeceE-EEE---EE------------EeCCCcE
Q 018550 81 Q-AYPFVARNYEGSVDLRRYPGHEEV----LRYLQNFAREFGVDQVVRLHTE-VLN---AR------------LVESNKW 139 (354)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~v~~~~~-v~~---i~------------~~~~~~~ 139 (354)
. ...+.. ..-...++ .+.+.+..++.+++ +..+.- +.+ +. ..+++..
T Consensus 118 ~~~~d~~~----------~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~ 185 (561)
T PTZ00058 118 QFSFNLPL----------LVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSENQVLIKKVSQVDGEADESDDDEV 185 (561)
T ss_pred cCccCHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCCEEEeeccccccccccccccccc
Confidence 0 011100 00001112 22233344445666 444321 111 00 0000222
Q ss_pred EEE------EeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHH
Q 018550 140 KVK------SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIK 213 (354)
Q Consensus 140 ~v~------~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a 213 (354)
++. ..++ ..+.||+||+||| +.|+.|+++|.+. .+.+..+.... .+++++|||+|.+|+|+|
T Consensus 186 ~v~~~~~~~~~~g----~~i~ad~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A 253 (561)
T PTZ00058 186 TIVSAGVSQLDDG----QVIEGKNILIAVG--NKPIFPDVKGKEF----TISSDDFFKIK--EAKRIGIAGSGYIAVELI 253 (561)
T ss_pred eeeeccceecCCC----cEEECCEEEEecC--CCCCCCCCCCcee----EEEHHHHhhcc--CCCEEEEECCcHHHHHHH
Confidence 231 1222 3799999999999 8999999988642 23333333222 279999999999999999
Q ss_pred HHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCC--c--EEEccC-cEEecCEEEEccc
Q 018550 214 RDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDG--T--VVFRNG-RVVSADVIMHCTG 277 (354)
Q Consensus 214 ~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~--~--v~~~~g-~~~~~D~vi~a~G 277 (354)
..+++.|++|+++.+.+. +...+.+++.+ +++.+..+.++++++ . +.+.++ +++++|.|++|+|
T Consensus 254 ~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~G 333 (561)
T PTZ00058 254 NVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVG 333 (561)
T ss_pred HHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcC
Confidence 999999999999999764 12233444555 899999999998542 2 333344 5799999999999
Q ss_pred CCCccCcccccCchh--hh---------------hceeeeecccch
Q 018550 278 LTGTSTTTLFLKPMA--LL---------------LWMTIVLGHCTS 306 (354)
Q Consensus 278 ~~~~~p~~~~l~~~~--~~---------------~~~i~a~GD~~~ 306 (354)
++ ||++++.... .. ..+|||+|||+.
T Consensus 334 r~---Pn~~~L~l~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~ 376 (561)
T PTZ00058 334 RS---PNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCM 376 (561)
T ss_pred CC---CCccccCccccceecCCCeEEECcCCccCCCCEEEeEeccC
Confidence 99 7777653211 10 234999999988
No 18
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.5e-31 Score=246.23 Aligned_cols=306 Identities=18% Similarity=0.185 Sum_probs=190.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhc-ccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVN-LPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 79 (354)
++||+|||+||||++||..+++.|.+|+|||+.+.+||+|.+. +|+|.+.++.... +...... ... ++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~--------gciPsK~l~~~~~~~~~~~~~~~~~--~g 72 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV--------GCMPSKALLHASELYEAASGGEFAH--LG 72 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC--------cccccHHHHHHhHHHHHHhhhhhhh--cC
Confidence 3799999999999999999999999999999877899999984 9999998776543 3222210 111 11
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
+. ... -.++.++.++ +....+..+++ +..+. . ++. ++..+.+...++.
T Consensus 73 i~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-a-~~~--~~~~v~v~~~~g~- 131 (466)
T PRK06115 73 IE---VKP-----------TLNLAQMMKQKDESVEALTKGVEFLFRKNKVD--WIKGW-G-RLD--GVGKVVVKAEDGS- 131 (466)
T ss_pred cc---ccC-----------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-E-EEc--cCCEEEEEcCCCc-
Confidence 10 000 0011222222 22223333454 44322 1 222 2134445444432
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| ++|. .++|........+++...... ...+++++|||+|++|+|+|..+++.|.+|+++.+
T Consensus 132 -~~~~~~d~lVIATG--s~p~--~ipg~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~ 205 (466)
T PRK06115 132 -ETQLEAKDIVIATG--SEPT--PLPGVTIDNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEY 205 (466)
T ss_pred -eEEEEeCEEEEeCC--CCCC--CCCCCCCCCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeC
Confidence 24799999999999 6664 345543211122332222221 23579999999999999999999999999999998
Q ss_pred cCC----------ccccccCCCCC-CeEEecceeEEecCC-c--EEEc---cC--cEEecCEEEEcccCCCccCcccccC
Q 018550 229 SVA----------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFR---NG--RVVSADVIMHCTGLTGTSTTTLFLK 289 (354)
Q Consensus 229 ~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~---~g--~~~~~D~vi~a~G~~~~~p~~~~l~ 289 (354)
.+. ...++.+++.+ +++.++.+++++.++ . +.+. +| +++++|.||+|+|++ ||++.+.
T Consensus 206 ~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~---pn~~~l~ 282 (466)
T PRK06115 206 LDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR---PYTQGLG 282 (466)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc---cccccCC
Confidence 764 12233444555 899999999998542 2 3332 23 579999999999999 7766532
Q ss_pred --chhhh---------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhh
Q 018550 290 --PMALL---------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVE 346 (354)
Q Consensus 290 --~~~~~---------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (354)
..+.. ..+|||+|||+.. ...|+...+.++.+.....++ ..++..+++.+|
T Consensus 283 ~~~~g~~~~~~G~~vd~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~~~~~~------~~~p~~~~t~p~ 356 (466)
T PRK06115 283 LETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNY------GLIPGVIYTRPE 356 (466)
T ss_pred cccccceeCCCCEEECCCeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCC------CCCCeEEECCcc
Confidence 21111 1339999999963 345666667777654332222 223334566677
Q ss_pred hhhhccc
Q 018550 347 LCFLHKT 353 (354)
Q Consensus 347 ~~~~~~~ 353 (354)
+.+.+.|
T Consensus 357 ia~vGlt 363 (466)
T PRK06115 357 VATVGKT 363 (466)
T ss_pred cEEeeCC
Confidence 7776655
No 19
>PRK06370 mercuric reductase; Validated
Probab=99.98 E-value=1.8e-31 Score=247.81 Aligned_cols=277 Identities=19% Similarity=0.233 Sum_probs=183.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+||||||+|+++|..|++.|.+|+|+|+. .+||+|.+ .+|.|.+.++.............. +++.
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~--------~gciPsk~l~~~a~~~~~~~~~~~--~g~~ 73 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN--------TGCVPTKTLIASARAAHLARRAAE--YGVS 73 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec--------cccCcHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 479999999999999999999999999999985 78999987 499998877765533322222111 1110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
... ....++..+.++. ....++. +++ ++.++.+. + +..++... +
T Consensus 74 ---~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~-~-----~~~~v~v~-~--- 129 (463)
T PRK06370 74 ---VGG---------PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF-E-----SPNTVRVG-G--- 129 (463)
T ss_pred ---cCc---------cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE-c-----cCCEEEEC-c---
Confidence 000 0001223333333 2333333 555 55544331 1 22344442 2
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.++.||+||+||| +.|+.|+++|.+.. ..+.+...... ...+++++|||+|++|+|+|..|++.|.+|+++.+.
T Consensus 130 -~~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~~~~-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~ 203 (463)
T PRK06370 130 -ETLRAKRIFINTG--ARAAIPPIPGLDEV--GYLTNETIFSL-DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG 203 (463)
T ss_pred -EEEEeCEEEEcCC--CCCCCCCCCCCCcC--ceEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 3789999999999 89999999987652 22333222221 235789999999999999999999999999999997
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEc--c-CcEEecCEEEEcccCCCccCccccc--Cc
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFR--N-GRVVSADVIMHCTGLTGTSTTTLFL--KP 290 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~--~-g~~~~~D~vi~a~G~~~~~p~~~~l--~~ 290 (354)
+. +...+.+++.+ +++.++.|.++..++. +.+. + +.++++|.||+|+|++ ||++.+ ..
T Consensus 204 ~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~---pn~~~l~l~~ 280 (463)
T PRK06370 204 PRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV---PNTDDLGLEA 280 (463)
T ss_pred CCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC---cCCCCcCchh
Confidence 74 12233344555 8899999999985432 3332 2 3579999999999999 666622 22
Q ss_pred hhh----------------hhceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 291 MAL----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 291 ~~~----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
.+. ...+|||+|||+.. ...|+...+.++.+.
T Consensus 281 ~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 281 AGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred hCceECCCCcEeECcCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 111 12349999999873 355666777787654
No 20
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.98 E-value=5.1e-31 Score=247.08 Aligned_cols=249 Identities=20% Similarity=0.249 Sum_probs=190.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||+|+++|..|+++|++++|+++ .+||+|.....+.+ +.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~~~~------------------------------~~ 258 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMGIEN------------------------------FI 258 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCcccc------------------------------cC
Confidence 47999999999999999999999999999986 48888864211110 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++ +....++.+++.+.+++++++ ++++++|.++...+ +.|.+.+.++. ++.||.||+|
T Consensus 259 ~~~--------------~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~-~~~~V~~~~g~----~i~a~~vViA 317 (517)
T PRK15317 259 SVP--------------ETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAA-GLIEVELANGA----VLKAKTVILA 317 (517)
T ss_pred CCC--------------CCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CeEEEEECCCC----EEEcCEEEEC
Confidence 111 123378999999999999988 88899999998876 78888877664 7999999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc----ccccc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEK 237 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~----~~~~~ 237 (354)
|| +.++.|.+||...+.+..++.+...+....++++|+|||+|++|+|+|..|+..+++|+++.+.+.. ...+.
T Consensus 318 tG--~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~ 395 (517)
T PRK15317 318 TG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDK 395 (517)
T ss_pred CC--CCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHH
Confidence 99 7788888998776666666655555545567899999999999999999999999999999997641 12233
Q ss_pred CCC--CCCeEEecceeEEecC-Cc---EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhhh------------
Q 018550 238 QPG--YDNMWLHSMVERANED-GT---VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMALL------------ 294 (354)
Q Consensus 238 l~~--~~~~~~~~~v~~v~~~-~~---v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------ 294 (354)
+.+ ..+++.++.++++.++ +. +.+.+ + +++++|.|++|+|++ ||+++++.....
T Consensus 396 l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~---p~~~~l~~~v~~~~~g~i~vd~~l 472 (517)
T PRK15317 396 LRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV---PNTEWLKGTVELNRRGEIIVDARG 472 (517)
T ss_pred HhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCc---cCchHHhhheeeCCCCcEEECcCC
Confidence 433 3389999999999866 33 44443 3 368999999999999 777776542111
Q ss_pred ---hceeeeecccchhh
Q 018550 295 ---LWMTIVLGHCTSTF 308 (354)
Q Consensus 295 ---~~~i~a~GD~~~~~ 308 (354)
..+|||+|||+...
T Consensus 473 ~Ts~p~IyAaGDv~~~~ 489 (517)
T PRK15317 473 ATSVPGVFAAGDCTTVP 489 (517)
T ss_pred CCCCCCEEECccccCCC
Confidence 13499999998743
No 21
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.98 E-value=1.8e-31 Score=247.88 Aligned_cols=283 Identities=19% Similarity=0.227 Sum_probs=183.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
+||+||||||+|+++|..|+++|.+|+|||++ .+||+|.+ .+|.|.+.+++............ +++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~-~~GG~c~n--------~gciPsk~l~~~~~~~~~~~~~~---~g~~~ 68 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG-PLGGTCVN--------VGCVPSKMLLRAAEVAHYARKPP---FGGLA 68 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-cccCCeee--------ecEEccHHHHHHHHHHHHhhccC---ccccc
Confidence 68999999999999999999999999999986 59999987 49999988776543322222211 11110
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHH-----HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRY-----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
..... ++...+....++... +.+.+++.+++ +..+ ++..+ +..++.+.++. ..+.+|+
T Consensus 69 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~~-----~~~~v~v~~g~---~~~~~~~ 131 (463)
T TIGR02053 69 ATVAV------DFGELLEGKREVVEELRHEKYEDVLSSYGVD--YLRG-RARFK-----DPKTVKVDLGR---EVRGAKR 131 (463)
T ss_pred CCCcc------CHHHHHHHHHHHHHHHhhhhHHHHHHhCCcE--EEEE-EEEEc-----cCCEEEEcCCe---EEEEeCE
Confidence 00000 000000111222222 22334555666 5443 33322 23455554431 3689999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC------
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------ 231 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~------ 231 (354)
||+||| +.|+.|+++|.+.. ..+++...... ...+++++|||+|.+|+|+|..|++.|.+|+++++.+.
T Consensus 132 lIiATG--s~p~~p~i~G~~~~--~~~~~~~~~~~-~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d 206 (463)
T TIGR02053 132 FLIATG--ARPAIPPIPGLKEA--GYLTSEEALAL-DRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREE 206 (463)
T ss_pred EEEcCC--CCCCCCCCCCcccC--ceECchhhhCc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccC
Confidence 999999 88999999987653 22333222222 12468999999999999999999999999999999763
Q ss_pred ----ccccccCCCCC-CeEEecceeEEecCCc---EEEcc---CcEEecCEEEEcccCCCccCccc-c-cCchhhh----
Q 018550 232 ----DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRN---GRVVSADVIMHCTGLTGTSTTTL-F-LKPMALL---- 294 (354)
Q Consensus 232 ----~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~---g~~~~~D~vi~a~G~~~~~p~~~-~-l~~~~~~---- 294 (354)
....+.+++.+ +++.++.|+++..++. +.+.+ ++++++|.||+|+|++ |+++ + +...+..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~---p~~~~l~l~~~g~~~~~~ 283 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRR---PNTDGLGLEKAGVKLDER 283 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCC---cCCCCCCccccCCEECCC
Confidence 11223344454 8899999999975432 34432 3679999999999999 6666 2 2222111
Q ss_pred ------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 295 ------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 295 ------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
..+|||+|||+.. ...|+...+.++.+.
T Consensus 284 G~i~vd~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 284 GGILVDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred CcEeECCCccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 2349999999873 345666777787664
No 22
>PRK07846 mycothione reductase; Reviewed
Probab=99.98 E-value=3.4e-31 Score=243.96 Aligned_cols=302 Identities=18% Similarity=0.196 Sum_probs=191.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+|||+||+|..+|.. ..|.+|.|+|++ .+||+|.+ .||+|.|.++..........+.+.. ++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n--------~GCiPsK~l~~~a~~~~~~~~~~~~--g~~ 67 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLN--------VGCIPTKMFVYAADVARTIREAARL--GVD 67 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccC--------cCcchhHHHHHHHHHHHHHHHHHhC--Ccc
Confidence 4799999999999998866 469999999984 79999998 4999999887765433222222111 110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------------CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
. ...-.++.++.++.....+++ +++ +.. .+..-+ +..+|.+.++.
T Consensus 68 -----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~a~~~-----~~~~V~v~~g~- 125 (451)
T PRK07846 68 -----A--------ELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNID--VYR-GHARFI-----GPKTLRTGDGE- 125 (451)
T ss_pred -----C--------CCCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcE--EEE-EEEEEe-----cCCEEEECCCC-
Confidence 0 000123355555554444332 222 222 122222 33456665543
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
++.||+||+||| ++|+.|+++|.... ....+.+.... ...+++++|||+|++|+|+|..|++.|.+|+++.+
T Consensus 126 ---~~~~d~lViATG--s~p~~p~i~g~~~~--~~~~~~~~~~l-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 197 (451)
T PRK07846 126 ---EITADQVVIAAG--SRPVIPPVIADSGV--RYHTSDTIMRL-PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNR 197 (451)
T ss_pred ---EEEeCEEEEcCC--CCCCCCCCCCcCCc--cEEchHHHhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEc
Confidence 799999999999 89999998885431 11222222111 22468999999999999999999999999999999
Q ss_pred cCC-----cc----ccccC-CCCCCeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCcccccC--chhh
Q 018550 229 SVA-----DE----THEKQ-PGYDNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PMAL 293 (354)
Q Consensus 229 ~~~-----~~----~~~~l-~~~~~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~ 293 (354)
.+. +. .+.++ +...++++++.+++++.++ . +.+.+|+++++|.|++|+|++ ||++++. ..+.
T Consensus 198 ~~~ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~---pn~~~l~~~~~gl 274 (451)
T PRK07846 198 SGRLLRHLDDDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRV---PNGDLLDAAAAGV 274 (451)
T ss_pred CCccccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCc---cCccccCchhcCc
Confidence 774 11 11122 2234788899999997543 2 556678899999999999999 7777642 2111
Q ss_pred h----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhc
Q 018550 294 L----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLH 351 (354)
Q Consensus 294 ~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (354)
. ..+|||+|||+.. ...|+...+.++.+...... ......+--+++.+|+.+.+
T Consensus 275 ~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~----~~~~~~p~~if~~p~ia~vG 350 (451)
T PRK07846 275 DVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIA----SDHRFVPAAVFTHPQIASVG 350 (451)
T ss_pred eECCCCcEeECCCcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCCCCccc----cCCCCCCeEEECCCCcEeEe
Confidence 1 2349999999974 34556666777755422111 11122233345556666555
Q ss_pred cc
Q 018550 352 KT 353 (354)
Q Consensus 352 ~~ 353 (354)
.|
T Consensus 351 lt 352 (451)
T PRK07846 351 LT 352 (451)
T ss_pred CC
Confidence 54
No 23
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.98 E-value=1.3e-31 Score=249.37 Aligned_cols=310 Identities=16% Similarity=0.223 Sum_probs=192.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC--------CccceeecCCCCCCCCCCCCCCCCcccccccccchhcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
.+||+||||||+|+.||..|+++|.+|+|+|+.. .+||+|.+ .+|.|.+.++..........+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n--------~gciPsK~l~~~a~~~~~~~~~ 76 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN--------VGCVPKKLMHYAANIGSIFHHD 76 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecc--------ccccchHHHHHHHHHHHHHHhH
Confidence 3799999999999999999999999999999631 48999987 4999987655543322211110
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceE---EEEEE---EeCCCcEEEEEeecC
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTE---VLNAR---LVESNKWKVKSRKKD 147 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~---v~~i~---~~~~~~~~v~~~~g~ 147 (354)
. ..+++.. + . -.++.++.+++....++++.. +....+ |+-+. ... +.++|.+.+.
T Consensus 77 ~-~~~g~~~-~------------~-~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~-~~~~v~v~~~- 137 (499)
T PTZ00052 77 S-QMYGWKT-S------------S-SFNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLK-DEHTVSYGDN- 137 (499)
T ss_pred H-hcCCCCC-C------------C-CcCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEc-cCCEEEEeeC-
Confidence 0 0111110 0 0 113366777776666554322 111111 11111 111 3345554332
Q ss_pred CceEEEEeCEEEEeeCCCCCcccCC-CCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEE
Q 018550 148 DVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (354)
Q Consensus 148 ~~~~~~~~d~vIlAtG~~s~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~ 226 (354)
+....+.||+||+||| +.|+.|. ++|...+ .+.+...... ...+++++|||+|++|+|+|..|++.|.+|+++
T Consensus 138 ~~~~~i~~d~lIIATG--s~p~~p~~i~G~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli 211 (499)
T PTZ00052 138 SQEETITAKYILIATG--GRPSIPEDVPGAKEY---SITSDDIFSL-SKDPGKTLIVGASYIGLETAGFLNELGFDVTVA 211 (499)
T ss_pred CCceEEECCEEEEecC--CCCCCCCCCCCccce---eecHHHHhhh-hcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 1124799999999999 8888874 8876542 1222222111 124679999999999999999999999999999
Q ss_pred EecCC---------ccccccCCCCC-CeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCcccccC--ch
Q 018550 227 SRSVA---------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PM 291 (354)
Q Consensus 227 ~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~ 291 (354)
.++.. +...+.|++.+ +++.++.++++...+ . +.+.+|+++++|.||+|+|++ ||++++. ..
T Consensus 212 ~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~---pn~~~l~l~~~ 288 (499)
T PTZ00052 212 VRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK---PDIKGLNLNAI 288 (499)
T ss_pred EcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC---CCccccCchhc
Confidence 87432 12233444555 888888888887432 2 566788889999999999999 7777652 22
Q ss_pred hh---------------hhceeeeecccchh-------hHHHHHHHhhhccCCCcc-cccCCCCCccccCCchhhhhhhh
Q 018550 292 AL---------------LLWMTIVLGHCTST-------FFRQSWHQAFHLLGYHRR-LSLSPSLNSRASGLPVFCLVELC 348 (354)
Q Consensus 292 ~~---------------~~~~i~a~GD~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 348 (354)
+. ...+|||+|||+.. ...|+...+.++.+.... ..+ ..++--+++.+|+.
T Consensus 289 g~~~~~~G~ii~~~~~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~------~~~p~~ift~p~ia 362 (499)
T PTZ00052 289 GVHVNKSNKIIAPNDCTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDY------TFIPTTIFTPIEYG 362 (499)
T ss_pred CcEECCCCCEeeCCCcCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCCCCcCcc------ccCCeEEecCCcce
Confidence 11 13459999999852 235555667777653321 122 22333355556665
Q ss_pred hhccc
Q 018550 349 FLHKT 353 (354)
Q Consensus 349 ~~~~~ 353 (354)
..+.|
T Consensus 363 ~vGlt 367 (499)
T PTZ00052 363 ACGYS 367 (499)
T ss_pred eecCC
Confidence 55544
No 24
>PLN02546 glutathione reductase
Probab=99.98 E-value=1.7e-31 Score=249.33 Aligned_cols=281 Identities=18% Similarity=0.182 Sum_probs=183.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEee---------CCCccceeecCCCCCCCCCCCCCCCCcccccccccchhc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~---------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (354)
.+||+|||+|++|+.+|..++++|.+|+|+|+ ...+||+|.+ .||+|.|.++...........
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n--------~GCiPsK~l~~aa~~~~~~~~ 150 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL--------RGCVPKKLLVYASKYSHEFEE 150 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC--------cchHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999996 2468999998 499999988765544332222
Q ss_pred ccccccccc---CCCCCccCCCCCCCCCCCCC----HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee
Q 018550 73 LPRELMGFQ---AYPFVARNYEGSVDLRRYPG----HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK 145 (354)
Q Consensus 73 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~ 145 (354)
......... .+.|.. .+-. ..++..++.+.+++.+++ ++. .+++.++. .++.+ +
T Consensus 151 ~~~~g~~~~~~~~~d~~~----------~~~~k~~~~~~l~~~~~~~l~~~gV~--~i~-G~a~~vd~-----~~V~v-~ 211 (558)
T PLN02546 151 SRGFGWKYETEPKHDWNT----------LIANKNAELQRLTGIYKNILKNAGVT--LIE-GRGKIVDP-----HTVDV-D 211 (558)
T ss_pred hhhcCcccCCCCCCCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCcE--EEE-eEEEEccC-----CEEEE-C
Confidence 211111100 111100 0000 022334444445555666 444 34444432 23444 2
Q ss_pred cCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEE
Q 018550 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI 225 (354)
Q Consensus 146 g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~ 225 (354)
+ ..+.||+||+||| +.|..|+++|.+.. +....... ....+++++|||+|++|+|+|..|++.+.+|++
T Consensus 212 G----~~~~~D~LVIATG--s~p~~P~IpG~~~v----~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtl 280 (558)
T PLN02546 212 G----KLYTARNILIAVG--GRPFIPDIPGIEHA----IDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHV 280 (558)
T ss_pred C----EEEECCEEEEeCC--CCCCCCCCCChhhc----cCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 3 2789999999999 89999999986531 22211111 123578999999999999999999999999999
Q ss_pred EEecCC-----c-----cccccCCCCC-CeEEecceeEEec--CCcEEE--ccCcEEecCEEEEcccCCCccCccccc--
Q 018550 226 ASRSVA-----D-----ETHEKQPGYD-NMWLHSMVERANE--DGTVVF--RNGRVVSADVIMHCTGLTGTSTTTLFL-- 288 (354)
Q Consensus 226 ~~r~~~-----~-----~~~~~l~~~~-~~~~~~~v~~v~~--~~~v~~--~~g~~~~~D~vi~a~G~~~~~p~~~~l-- 288 (354)
+.+.+. + ...+.|++.+ +++.++.++++.. ++.+.+ .+++...+|.||+|+|++ ||++++
T Consensus 281 v~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~---Pnt~~L~l 357 (558)
T PLN02546 281 FIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRK---PNTKNLGL 357 (558)
T ss_pred EEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccc---cCCCcCCh
Confidence 998764 1 1223444555 8899999999874 333333 344445599999999999 777653
Q ss_pred Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 289 KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 289 ~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
+..+.. ..+|||+|||+.. ...|+...+.++.+..
T Consensus 358 e~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~ 414 (558)
T PLN02546 358 EEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNE 414 (558)
T ss_pred hhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 222221 1339999999873 3455566677776654
No 25
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.98 E-value=4.4e-31 Score=244.07 Aligned_cols=282 Identities=18% Similarity=0.234 Sum_probs=182.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeC--------CCccceeecCCCCCCCCCCCCCCCCcccccccccchhc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~--------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (354)
.+||+|||+||+|..+|..+++. |.+|.|||++ ..+||+|.+ .||+|.|.+++.+.......+
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln--------~GCiPsK~l~~~a~~~~~~~~ 74 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN--------VGCVPKKLMVTGAQYMDTLRE 74 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC--------cCCccHHHHHHHHHHHHHHHH
Confidence 58999999999999999999996 9999999973 479999998 499999998876643322222
Q ss_pred cccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH-----------H-hCCcceEEeceEEEEEEEeCCCcEE
Q 018550 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-----------E-FGVDQVVRLHTEVLNARLVESNKWK 140 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~-~~~~~~v~~~~~v~~i~~~~~~~~~ 140 (354)
... +++.. .. ...-.++..+.++.....+ . .+++ +.. .+..-+ +..+
T Consensus 75 ~~~--~gi~~-~~----------~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~--~i~-G~a~f~-----~~~~ 133 (486)
T TIGR01423 75 SAG--FGWEF-DR----------SSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLT--FFL-GWGALE-----DKNV 133 (486)
T ss_pred hhc--cCeec-cC----------CccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeE--EEE-EEEEEc-----cCCE
Confidence 111 11100 00 0000122333333332222 2 1333 333 221111 2234
Q ss_pred EEEee---cCC-ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHH
Q 018550 141 VKSRK---KDD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDL 216 (354)
Q Consensus 141 v~~~~---g~~-~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l 216 (354)
|.+.. +.+ ..+.+.||+||+||| +.|+.|+++|.+.. ..+...... ...+++++|||+|++|+|+|..+
T Consensus 134 v~V~~~~~~~~~~~~~~~~d~lIIATG--s~p~~p~i~G~~~~----~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~~ 206 (486)
T TIGR01423 134 VLVRESADPKSAVKERLQAEHILLATG--SWPQMLGIPGIEHC----ISSNEAFYL-DEPPRRVLTVGGGFISVEFAGIF 206 (486)
T ss_pred EEEeeccCCCCCcceEEECCEEEEecC--CCCCCCCCCChhhe----echhhhhcc-ccCCCeEEEECCCHHHHHHHHHH
Confidence 44432 111 125799999999999 88999999886531 222111111 12568999999999999999877
Q ss_pred hcc---CCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecC--C--cEEEccCcEEecCEEEEcccC
Q 018550 217 AGF---AKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 217 ~~~---g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~~~~g~~~~~D~vi~a~G~ 278 (354)
... |.+|+++.+.+. +...+.|++.+ +++.++.++++..+ + .+.+++++++++|.||+|+|+
T Consensus 207 ~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 207 NAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 554 899999998774 22334455555 88999999999743 2 266677889999999999999
Q ss_pred CCccCcccccC--chhhh----------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 279 TGTSTTTLFLK--PMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 279 ~~~~p~~~~l~--~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
+ ||++++. ..+.. ..+|||+|||+.. +..|+...+.++.+.
T Consensus 287 ~---Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 287 V---PRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred C---cCcccCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 9 7666542 11111 2349999999974 345666677777654
No 26
>PRK13748 putative mercuric reductase; Provisional
Probab=99.98 E-value=6e-31 Score=250.26 Aligned_cols=283 Identities=19% Similarity=0.265 Sum_probs=185.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||+|+++|..|+++|.+|.|||++ .+||+|.+. ||.|.+.++.+..........+.+ .++
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~--------gciPsk~l~~~~~~~~~~~~~~~~-~g~- 166 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNV--------GCVPSKIMIRAAHIAHLRRESPFD-GGI- 166 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecccc--------CccccHHHHHHHHHHHHHhccccc-CCc-
Confidence 379999999999999999999999999999996 899999984 999998877655433322222110 011
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH------------Hh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR------------EF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
.... .-..+..+.++...... .. +++ +.. .++..++ . +.+.+...++.
T Consensus 167 --~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~--~-~~~~v~~~~g~- 227 (561)
T PRK13748 167 --AATV----------PTIDRSRLLAQQQARVDELRHAKYEGILDGNPAIT--VLH-GEARFKD--D-QTLIVRLNDGG- 227 (561)
T ss_pred --cCCC----------CccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeE--EEE-EEEEEec--C-CEEEEEeCCCc-
Confidence 0000 00122444444333222 21 333 333 3444332 2 55666654442
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.|+.|+++|.... ..+.+..... ....+++++|||+|++|+|+|..|.+.|++|+++.+
T Consensus 228 -~~~~~~d~lviAtG--s~p~~p~i~g~~~~--~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~ 301 (561)
T PRK13748 228 -ERVVAFDRCLIATG--ASPAVPPIPGLKET--PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILAR 301 (561)
T ss_pred -eEEEEcCEEEEcCC--CCCCCCCCCCCCcc--ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 24799999999999 88999999987642 1122211111 123568999999999999999999999999999998
Q ss_pred cCC---------ccccccCCCCC-CeEEecceeEEecCC-cEEE-ccCcEEecCEEEEcccCCCccCccccc--Cchhhh
Q 018550 229 SVA---------DETHEKQPGYD-NMWLHSMVERANEDG-TVVF-RNGRVVSADVIMHCTGLTGTSTTTLFL--KPMALL 294 (354)
Q Consensus 229 ~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~v~~-~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~~ 294 (354)
... ....+.+++.+ +++.++.+++++.++ .+.+ .++.++++|.||+|+|++ ||++++ ...+..
T Consensus 302 ~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~---pn~~~l~l~~~g~~ 378 (561)
T PRK13748 302 STLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRA---PNTRSLALDAAGVT 378 (561)
T ss_pred CccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCC---cCCCCcCchhcCce
Confidence 532 12233344555 888999999987443 2333 233479999999999999 777653 222211
Q ss_pred ----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 295 ----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 295 ----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
..+|||+|||+.. +..++...+.++.+..
T Consensus 379 ~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 429 (561)
T PRK13748 379 VNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGD 429 (561)
T ss_pred ECCCCCEeECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCC
Confidence 2349999999863 3456666777776544
No 27
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.97 E-value=1.2e-30 Score=241.74 Aligned_cols=311 Identities=18% Similarity=0.189 Sum_probs=196.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (354)
+++|+|||+|++|+.+|..|+++|.+|+++|++ .+||+|.+. +|.|.|.++.... +..+. .........
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~--------gciPsK~l~~~a~~~~~~~-~~~~~g~~~ 70 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLT--------DCVPSKTLIATAEVRTELR-RAAELGIRF 70 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccccc--------CCcchHHHHHHHHHHHHHH-HHHhCCccc
Confidence 468999999999999999999999999999986 689999984 9999988776542 22222 111110000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHH-----------HHHHHHHHHHhCCcceEEeceEEEEEE--EeCCCcEEEEEeecC
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEV-----------LRYLQNFAREFGVDQVVRLHTEVLNAR--LVESNKWKVKSRKKD 147 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~v~~~~~v~~i~--~~~~~~~~v~~~~g~ 147 (354)
.. + .....++..+ .+.+.+.+++.+++ ++. .++..++ .+. +...+...++.
T Consensus 71 ~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~~-g~~~~~~~~~~~-~~v~V~~~~g~ 134 (466)
T PRK07845 71 ID-D-----------GEARVDLPAVNARVKALAAAQSADIRARLEREGVR--VIA-GRGRLIDPGLGP-HRVKVTTADGG 134 (466)
T ss_pred cc-C-----------cccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEE-EEEEEeecccCC-CEEEEEeCCCc
Confidence 00 0 0000011222 23344445556777 554 4455543 222 44555554432
Q ss_pred CceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEE
Q 018550 148 DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (354)
Q Consensus 148 ~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~ 227 (354)
.+++.||+||+||| +.|+.|+.++... ...+++....+.. ..+++++|||+|.+|+|+|..|++.|.+|++++
T Consensus 135 --~~~~~~d~lViATG--s~p~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~ 207 (466)
T PRK07845 135 --EETLDADVVLIATG--ASPRILPTAEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVS 207 (466)
T ss_pred --eEEEecCEEEEcCC--CCCCCCCCCCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 24789999999999 7887665443321 1233333332222 246899999999999999999999999999999
Q ss_pred ecCC----------ccccccCCCCC-CeEEecceeEEecC-Cc--EEEccCcEEecCEEEEcccCCCccCccccc--Cch
Q 018550 228 RSVA----------DETHEKQPGYD-NMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGLTGTSTTTLFL--KPM 291 (354)
Q Consensus 228 r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~-~~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~ 291 (354)
+.+. +...+.|++.+ +++.++.+++++.+ +. +.+.+|+++++|.||+|+|++ ||++++ .+.
T Consensus 208 ~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~---pn~~~l~l~~~ 284 (466)
T PRK07845 208 SRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSV---PNTAGLGLEEA 284 (466)
T ss_pred cCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCC---cCCCCCCchhh
Confidence 8764 11233444555 88889999999643 22 555678899999999999999 666642 222
Q ss_pred hhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhh
Q 018550 292 ALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCF 349 (354)
Q Consensus 292 ~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (354)
+.. ..+|||+|||+.. +..|+...+.|+.+.... ......++-.+++.+|+.+
T Consensus 285 gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~-----~~~~~~~p~~vf~~p~~a~ 359 (466)
T PRK07845 285 GVELTPSGHITVDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVS-----PLRLKTVASNVFTRPEIAT 359 (466)
T ss_pred CceECCCCcEeECCCcccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCCCCC-----cCCCCCCCEEEeCCCccee
Confidence 211 1349999999973 346666777787654321 0112223334555666666
Q ss_pred hccc
Q 018550 350 LHKT 353 (354)
Q Consensus 350 ~~~~ 353 (354)
.+.|
T Consensus 360 vGlt 363 (466)
T PRK07845 360 VGVS 363 (466)
T ss_pred ecCC
Confidence 5554
No 28
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=7.8e-31 Score=242.17 Aligned_cols=299 Identities=20% Similarity=0.238 Sum_probs=188.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC-CccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++||+||||||+|+++|..|+++|.+|+|||+.+ .+||+|.+. +|.|.+.+.+....
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~--------gcip~k~l~~~~~~-------------- 60 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINI--------GCIPTKTLVHDAQQ-------------- 60 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeec--------cccchHHHHHHhcc--------------
Confidence 4799999999999999999999999999999975 479999874 78877654433211
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHH-----HHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
...+.. .+.....+.++++. ..+..+++ +.. .++..++. +.+.+...++. .++.|
T Consensus 61 -~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~-g~~~~i~~---~~~~v~~~~g~---~~~~~ 120 (441)
T PRK08010 61 -HTDFVR----------AIQRKNEVVNFLRNKNFHNLADMPNID--VID-GQAEFINN---HSLRVHRPEGN---LEIHG 120 (441)
T ss_pred -CCCHHH----------HHHHHHHHHHHHHHhHHHHHhhcCCcE--EEE-EEEEEecC---CEEEEEeCCCe---EEEEe
Confidence 000000 00000222232221 11222555 443 34555432 55666655442 36899
Q ss_pred CEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----
Q 018550 156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (354)
Q Consensus 156 d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---- 231 (354)
|+||+||| ++|+.|+++|.+...+ .+....... ....+++++|||+|++|+|+|..|++.|.+|+++++.+.
T Consensus 121 d~lviATG--s~p~~p~i~G~~~~~~-v~~~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 121 EKIFINTG--AQTVVPPIPGITTTPG-VYDSTGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CEEEEcCC--CcCCCCCCCCccCCCC-EEChhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 99999999 8899999999765432 333322222 223568999999999999999999999999999998764
Q ss_pred ------ccccccCCCCC-CeEEecceeEEecCC-cEEEc-cCcEEecCEEEEcccCCCccCcccccC--chhhh------
Q 018550 232 ------DETHEKQPGYD-NMWLHSMVERANEDG-TVVFR-NGRVVSADVIMHCTGLTGTSTTTLFLK--PMALL------ 294 (354)
Q Consensus 232 ------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~v~~~-~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~~------ 294 (354)
....+.+++.+ +++.++.|+++..++ .+.+. ++.++++|.|++|+|++ ||++++. ..+..
T Consensus 197 ~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~---pn~~~l~~~~~gl~~~~~G~ 273 (441)
T PRK08010 197 EDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQ---PATASLHPENAGIAVNERGA 273 (441)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCC---cCCCCcCchhcCcEECCCCc
Confidence 11223445555 889999999998543 24332 23468999999999999 7666532 21111
Q ss_pred ----------hceeeeecccchhh------HHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhccc
Q 018550 295 ----------LWMTIVLGHCTSTF------FRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLHKT 353 (354)
Q Consensus 295 ----------~~~i~a~GD~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (354)
..+|||+|||+... ..++...+.++.+...... .....++.-+++.+|+...+.|
T Consensus 274 i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~~~~~~----~~~~~~p~~~~~~p~ia~vGlt 344 (441)
T PRK08010 274 IVVDKYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRST----DDRKNVPYSVFMTPPLSRVGMT 344 (441)
T ss_pred EEECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCCCccc----CccCCCCEEEECCCCceeeeCC
Confidence 13499999999842 3444455666655322111 1111222334555666655544
No 29
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.7e-30 Score=237.30 Aligned_cols=200 Identities=33% Similarity=0.596 Sum_probs=180.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCc-EEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
..+|+|||||++|+++|+.|.++|.. +++|||++.+||+|..+ .|+.+..+.|....++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~--------------------ry~~l~~~~p~~~~~~ 67 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN--------------------RYPGLRLDSPKWLLGF 67 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc--------------------cCCceEECCchheecc
Confidence 47899999999999999999999998 99999999999999985 7888888999888888
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeecCCceEEEEeCEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+.+++. +...|+....+.+|+.++++++++...+.+++.|..+.++++ +.|+|++.++... ++.+|.||
T Consensus 68 ~~~p~~--------~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~--~~~a~~vV 137 (443)
T COG2072 68 PFLPFR--------WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTG--ELTADFVV 137 (443)
T ss_pred CCCccC--------CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCee--eEecCEEE
Confidence 888774 234566667799999999999999888899999988888654 5899999987632 27799999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+|||.++.|++|.++|.+.|.+..+|+.++++...+++|+|+|||+|.||++++.+|++.|++|+++.|++.
T Consensus 138 ~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 138 VATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred EeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 30
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.97 E-value=1.9e-30 Score=242.89 Aligned_cols=248 Identities=19% Similarity=0.248 Sum_probs=184.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|++.|.+|+|+++ .+||++.....+. .+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~~------------------------------~~~ 259 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGIE------------------------------NLI 259 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCcc------------------------------ccc
Confidence 37999999999999999999999999999985 5788776421100 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++. ....++.+.+.+.+.+++++ ++.+++|+++...+ +.+.+++.++. .+.||++|+|
T Consensus 260 ~~~~--------------~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~-~~~~v~~~~g~----~i~~d~lIlA 318 (515)
T TIGR03140 260 SVPY--------------TTGSQLAANLEEHIKQYPID--LMENQRAKKIETED-GLIVVTLESGE----VLKAKSVIVA 318 (515)
T ss_pred ccCC--------------CCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecC-CeEEEEECCCC----EEEeCEEEEC
Confidence 1111 12377888888888888988 88899999998766 67888877654 7999999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc----ccccc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEK 237 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~----~~~~~ 237 (354)
|| +.++.|.++|...+....++.+...+.....+++++|||+|++|+|+|..|++.+++|+++.+.+.. ...+.
T Consensus 319 tG--a~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~ 396 (515)
T TIGR03140 319 TG--ARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDK 396 (515)
T ss_pred CC--CCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHH
Confidence 99 6788888888655544444444333433456899999999999999999999999999999987641 12333
Q ss_pred CCC-CC-CeEEecceeEEecC-Cc---EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhhh------------
Q 018550 238 QPG-YD-NMWLHSMVERANED-GT---VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMALL------------ 294 (354)
Q Consensus 238 l~~-~~-~~~~~~~v~~v~~~-~~---v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------ 294 (354)
+.+ .+ +++.++.++++.++ +. |++.+ + +++++|.|++|+|+. ||+++++.....
T Consensus 397 l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~---Pn~~~l~~~~~~~~~G~I~vd~~~ 473 (515)
T TIGR03140 397 LKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV---PNTEWLKDAVELNRRGEIVIDERG 473 (515)
T ss_pred HhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCc---CCchHHhhhcccCCCCeEEECCCC
Confidence 443 34 88999999999865 32 55543 2 468999999999999 777776543111
Q ss_pred ---hceeeeecccchh
Q 018550 295 ---LWMTIVLGHCTST 307 (354)
Q Consensus 295 ---~~~i~a~GD~~~~ 307 (354)
..+|||+|||+..
T Consensus 474 ~Ts~p~IyAaGDv~~~ 489 (515)
T TIGR03140 474 RTSVPGIFAAGDVTTV 489 (515)
T ss_pred CCCCCCEEEcccccCC
Confidence 2349999999874
No 31
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=1.7e-30 Score=241.72 Aligned_cols=289 Identities=17% Similarity=0.174 Sum_probs=181.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
.+||+||||||+|+++|..|+++|.+|+|+|+. .+||+|.+ .+|.|.+.+++.. .+..+.. ........
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~--------~gciPsk~l~~~a~~~~~~~~-~~~~g~~~ 73 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH--------KGCIPSKALLHSAEVFQTAKK-ASPFGISV 73 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc--------CCcCchHHHHHHHHHHHHHHH-HHhcCccC
Confidence 489999999999999999999999999999995 89999998 4999998876654 2333222 11100000
Q ss_pred c--CCCCCccCCCCCCCCCCCCCHHHHHHH----HHHHHHHhCCcceEEeceEEEEEEEe----CCCcEEEEEeecCCce
Q 018550 81 Q--AYPFVARNYEGSVDLRRYPGHEEVLRY----LQNFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDVV 150 (354)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~v~~~~~v~~i~~~----~~~~~~v~~~~g~~~~ 150 (354)
. ...|.. ..-...++.++ ..+.+++.+++ +.. .++..++.+ .++.+.+.+.++. .
T Consensus 74 ~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~-g~a~~i~~~~~~~~~~~~~v~~~~g~--~ 138 (472)
T PRK05976 74 SGPALDFAK----------VQERKDGIVDRLTKGVAALLKKGKID--VFH-GIGRILGPSIFSPMPGTVSVETETGE--N 138 (472)
T ss_pred CCCccCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEeCCCCCcCCceEEEEEeCCCc--e
Confidence 0 001000 00000122222 22334455676 555 456666543 0025666655542 2
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++.||+||+||| +.|+.++ +........+++...... ...+++++|||+|++|+|+|..|++.|.+|+++.+.+
T Consensus 139 ~~~~~d~lViATG--s~p~~~p--~~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 139 EMIIPENLLIATG--SRPVELP--GLPFDGEYVISSDEALSL-ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred EEEEcCEEEEeCC--CCCCCCC--CCCCCCceEEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4799999999999 6775432 222111112332222221 2246899999999999999999999999999999876
Q ss_pred C----------ccccccCCCCC-CeEEecceeEEec--CCcE---EEccC--cEEecCEEEEcccCCCccCcccccC--c
Q 018550 231 A----------DETHEKQPGYD-NMWLHSMVERANE--DGTV---VFRNG--RVVSADVIMHCTGLTGTSTTTLFLK--P 290 (354)
Q Consensus 231 ~----------~~~~~~l~~~~-~~~~~~~v~~v~~--~~~v---~~~~g--~~~~~D~vi~a~G~~~~~p~~~~l~--~ 290 (354)
. ....+.+++.+ +++.++.|++++. ++.+ .+.+| +++++|.+|+|+|.+ |+++.+. .
T Consensus 214 ~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~l~l~~ 290 (472)
T PRK05976 214 RILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR---PNTEGIGLEN 290 (472)
T ss_pred ccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc---cCCCCCCchh
Confidence 4 11223445555 8999999999973 3332 23456 468999999999999 6655431 1
Q ss_pred hhh---------------hhceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 291 MAL---------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 291 ~~~---------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
... ...+|||+|||... ...++...+.++.+..
T Consensus 291 ~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (472)
T PRK05976 291 TDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344 (472)
T ss_pred cCceecCCEEEECCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 110 12459999999863 2445556666776543
No 32
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=2e-30 Score=240.38 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=191.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC--------CccceeecCCCCCCCCCCCCCCCCcccccccccchhcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
++||+|||+||+|+.+|..+++.|.+|.++|+.. .+||+|.+ .||.|.|.+++.........+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n--------~GCiPsK~l~~~a~~~~~~~~~ 73 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN--------VGCIPKKLMHQAALLGQALKDS 73 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc--------cCcCchhHHHHHHHHHHHHhhh
Confidence 5799999999999999999999999999999731 58999988 4999999887765432222111
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCcceEEeceEEEEEEEeCCCcEEEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----------FAREFGVDQVVRLHTEVLNARLVESNKWKVK 142 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~ 142 (354)
.. +++. ... ..-.++..+.++..+ .++..+++ +.. .+..-++ . +...+.
T Consensus 74 ~~--~g~~---~~~---------~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~--~i~-G~a~f~~--~-~~v~v~ 133 (484)
T TIGR01438 74 RN--YGWN---VEE---------TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN--YEN-AYAEFVD--K-HRIKAT 133 (484)
T ss_pred hh--cCcc---cCC---------CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEE-EEEEEcC--C-CEEEEe
Confidence 11 1110 000 000122333333322 23333444 332 2222221 1 333333
Q ss_pred EeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCE
Q 018550 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (354)
Q Consensus 143 ~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~ 222 (354)
..++ ....+.||+||+||| +.|+.|+++|..+. .+.+...... ...+++++|||+|++|+|+|..|++.|.+
T Consensus 134 ~~~g--~~~~~~~d~lVIATG--s~p~~p~ipG~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~ 205 (484)
T TIGR01438 134 NKKG--KEKIYSAERFLIATG--ERPRYPGIPGAKEL---CITSDDLFSL-PYCPGKTLVVGASYVALECAGFLAGIGLD 205 (484)
T ss_pred ccCC--CceEEEeCEEEEecC--CCCCCCCCCCccce---eecHHHhhcc-cccCCCEEEECCCHHHHHHHHHHHHhCCc
Confidence 2232 234799999999999 89999999987542 1222222221 12457899999999999999999999999
Q ss_pred EEEEEecCC---------ccccccCCCCC-CeEEecceeEEecCC-c--EEEccC---cEEecCEEEEcccCCCccCccc
Q 018550 223 VHIASRSVA---------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNG---RVVSADVIMHCTGLTGTSTTTL 286 (354)
Q Consensus 223 v~~~~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g---~~~~~D~vi~a~G~~~~~p~~~ 286 (354)
|+++.+... +...+.|++.+ +++.++.++++...+ . +++.++ +++++|.||+|+|++ ||++
T Consensus 206 Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~---pn~~ 282 (484)
T TIGR01438 206 VTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD---ACTR 282 (484)
T ss_pred EEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC---cCCC
Confidence 999998532 12233445555 889998888887432 2 555555 379999999999999 7776
Q ss_pred ccC--chhh-----------------hhceeeeecccchh-------hHHHHHHHhhhccCCCc-ccccCCCCCccccCC
Q 018550 287 FLK--PMAL-----------------LLWMTIVLGHCTST-------FFRQSWHQAFHLLGYHR-RLSLSPSLNSRASGL 339 (354)
Q Consensus 287 ~l~--~~~~-----------------~~~~i~a~GD~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 339 (354)
++. ..+. ...+|||+|||+.. +..|+...+.++.+... ...+ ..++.
T Consensus 283 ~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~------~~~p~ 356 (484)
T TIGR01438 283 KLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDY------ENVPT 356 (484)
T ss_pred cCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcCCCccccc------ccCCe
Confidence 532 2111 02349999999851 24556666777765332 1222 11333
Q ss_pred chhhhhhhhhhccc
Q 018550 340 PVFCLVELCFLHKT 353 (354)
Q Consensus 340 ~~~~~~~~~~~~~~ 353 (354)
.+++.+|+...+.|
T Consensus 357 ~i~~~p~ia~vGlt 370 (484)
T TIGR01438 357 TVFTPLEYGACGLS 370 (484)
T ss_pred EEeCCCceeeecCC
Confidence 35666666666554
No 33
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=2.3e-30 Score=238.85 Aligned_cols=257 Identities=18% Similarity=0.206 Sum_probs=168.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC-ccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++||+||||||||+++|..|++.|.+|+|||+++. +||+|.+. +|.|.+.++.....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~--------gciP~k~~~~~~~~-------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINI--------GCIPTKTLLVAAEK-------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecC--------ccccchHhhhhhhc--------------
Confidence 47999999999999999999999999999999764 69999873 88887765543321
Q ss_pred cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
...+... .-.. ..+.....+...+.+++ +..+ +...+ +..++....+. ...++.||
T Consensus 61 -~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~~~~~-----~~~~v~v~~~~-~~~~~~~d 120 (438)
T PRK07251 61 -NLSFEQV----------MATKNTVTSRLRGKNYAMLAGSGVD--LYDA-EAHFV-----SNKVIEVQAGD-EKIELTAE 120 (438)
T ss_pred -CCCHHHH----------HHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEc-----cCCEEEEeeCC-CcEEEEcC
Confidence 0000000 0000 11122223334445665 4442 23222 12234433321 12479999
Q ss_pred EEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----
Q 018550 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----- 231 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----- 231 (354)
+||+||| +.|+.|+++|..... ..+.+...... ...+++++|||+|++|+|+|..+++.|.+|+++.+.+.
T Consensus 121 ~vViATG--s~~~~p~i~G~~~~~-~v~~~~~~~~~-~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~ 196 (438)
T PRK07251 121 TIVINTG--AVSNVLPIPGLADSK-HVYDSTGIQSL-ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE 196 (438)
T ss_pred EEEEeCC--CCCCCCCCCCcCCCC-cEEchHHHhcc-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC
Confidence 9999999 789999999875422 23333222221 23578999999999999999999999999999999763
Q ss_pred cc-----ccccCCCCC-CeEEecceeEEecCC-cE-EEccCcEEecCEEEEcccCCCccCcccccC--chhh--------
Q 018550 232 DE-----THEKQPGYD-NMWLHSMVERANEDG-TV-VFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PMAL-------- 293 (354)
Q Consensus 232 ~~-----~~~~l~~~~-~~~~~~~v~~v~~~~-~v-~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~-------- 293 (354)
+. ..+.+++.+ +++.++.++++..++ .+ ...+++++++|.+|+|+|++ |+++.+. ..+.
T Consensus 197 ~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~---p~~~~l~l~~~~~~~~~~g~i 273 (438)
T PRK07251 197 EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRK---PNTEPLGLENTDIELTERGAI 273 (438)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCC---CCcccCCchhcCcEECCCCcE
Confidence 11 122234444 888889999997543 23 33467789999999999999 6555432 1110
Q ss_pred --------hhceeeeecccchh
Q 018550 294 --------LLWMTIVLGHCTST 307 (354)
Q Consensus 294 --------~~~~i~a~GD~~~~ 307 (354)
...+|||+|||+..
T Consensus 274 ~vd~~~~t~~~~IyaiGD~~~~ 295 (438)
T PRK07251 274 KVDDYCQTSVPGVFAVGDVNGG 295 (438)
T ss_pred EECCCcccCCCCEEEeeecCCC
Confidence 02349999999974
No 34
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=3.1e-30 Score=238.87 Aligned_cols=281 Identities=15% Similarity=0.206 Sum_probs=179.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+|+||||||+|+++|..|++.|.+|+|||++ .+||+|.+. +|.|.|.++.............. +++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~--------gciPsk~l~~~a~~~~~~~~~~~--~g~~-- 68 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNE--------GCMPTKSLLESAEVHDKVKKANH--FGIT-- 68 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCC--------ccccchHHHHHHHHHHHHHHHHh--cCcc--
Confidence 8999999999999999999999999999986 689999984 99999888765433222221111 1110
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHH-----------HHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNF-----------AREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
... .....++..+..+..+. +++.+++ +.. .++..++ + +...+...++. .+
T Consensus 69 -~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~a~~~~--~-~~v~v~~~~~~---~~ 130 (458)
T PRK06912 69 -LPN--------GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIK--VIQ-GKASFET--D-HRVRVEYGDKE---EV 130 (458)
T ss_pred -ccC--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEE-EEEEEcc--C-CEEEEeeCCCc---EE
Confidence 000 00011223443333322 2233444 322 3333332 2 44555543321 47
Q ss_pred EEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
+.||+||+||| +.|+.|++++.... ..+++..... ....+++++|||+|++|+|+|..+.+.|.+|+++.+.+.
T Consensus 131 ~~~d~lviATG--s~p~~~p~~~~~~~--~v~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 131 VDAEQFIIAAG--SEPTELPFAPFDGK--WIINSKHAMS-LPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred EECCEEEEeCC--CCCCCCCCCCCCCC--eEEcchHHhC-ccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 99999999999 78877766664321 2233222221 122468999999999999999999999999999998764
Q ss_pred ---------ccccccCCCCC-CeEEecceeEEecCCc-EEEc-cC--cEEecCEEEEcccCCCccCccccc--Cchhh--
Q 018550 232 ---------DETHEKQPGYD-NMWLHSMVERANEDGT-VVFR-NG--RVVSADVIMHCTGLTGTSTTTLFL--KPMAL-- 293 (354)
Q Consensus 232 ---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~-v~~~-~g--~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~-- 293 (354)
+...+.+++.+ +++.++.|++++.++. +.+. ++ .++++|.|++|+|++ |+++++ ...+.
T Consensus 206 l~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~---p~~~~l~l~~~gv~~ 282 (458)
T PRK06912 206 LPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRK---PRVQQLNLEKAGVQF 282 (458)
T ss_pred CccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCc---cCCCCCCchhcCcee
Confidence 11223344455 8899999999975543 4443 34 368999999999999 666543 11111
Q ss_pred -------------hhceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 294 -------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 294 -------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
...+|||+|||+.. ...++...+.++.+..
T Consensus 283 ~~~gi~Vd~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~~ 331 (458)
T PRK06912 283 SNKGISVNEHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGED 331 (458)
T ss_pred cCCCEEeCCCeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 12459999999962 3455666677776543
No 35
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2.7e-30 Score=240.16 Aligned_cols=309 Identities=17% Similarity=0.192 Sum_probs=192.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEee------CCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLP 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 74 (354)
.+||+||||||+|+++|..+++.|.+|+|+|+ ...+||+|.+ .+|.|.+.++.... +..+.....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n--------~gc~P~k~l~~~a~~~~~~~~~~~ 75 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN--------VGCIPSKALLASSEEFENAGHHFA 75 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc--------ccccHHHHHHHHHHHHHHHHhhHH
Confidence 47999999999999999999999999999998 3578999987 48888766554432 222221111
Q ss_pred cccccccCCCCCccCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEE
Q 018550 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS 143 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~ 143 (354)
.........+ .++..+.+ ...+..+..+++ +.. .++..++..+ +.++|.+
T Consensus 76 ~~G~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~~~~-~~~~v~v 136 (475)
T PRK06327 76 DHGIHVDGVK---------------IDVAKMIARKDKVVKKMTGGIEGLFKKNKIT--VLK-GRGSFVGKTD-AGYEIKV 136 (475)
T ss_pred hcCccCCCCc---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEecCCC-CCCEEEE
Confidence 1111000000 01122222 233334445666 443 5555665444 5677776
Q ss_pred eecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEE
Q 018550 144 RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV 223 (354)
Q Consensus 144 ~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v 223 (354)
..+.+ .+++||+||+||| +.|+.++..+. .+..+............+++++|||+|++|+|+|..|++.|.+|
T Consensus 137 ~~~~~--~~~~~d~lViATG--s~p~~~p~~~~---~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~V 209 (475)
T PRK06327 137 TGEDE--TVITAKHVIIATG--SEPRHLPGVPF---DNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEV 209 (475)
T ss_pred ecCCC--eEEEeCEEEEeCC--CCCCCCCCCCC---CCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 53221 3799999999999 77764432221 11222222211111235789999999999999999999999999
Q ss_pred EEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEcc--C--cEEecCEEEEcccCCCccCcc
Q 018550 224 HIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRN--G--RVVSADVIMHCTGLTGTSTTT 285 (354)
Q Consensus 224 ~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~--g--~~~~~D~vi~a~G~~~~~p~~ 285 (354)
+++.+.+. ....+.+++.+ +++.++.|++++.++. +.+.+ | +++++|.|++|+|++ |++
T Consensus 210 tli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~---p~~ 286 (475)
T PRK06327 210 TILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRV---PNT 286 (475)
T ss_pred EEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCc---cCC
Confidence 99998764 11233444555 8899999999985432 44444 3 478999999999999 666
Q ss_pred cccC--chhh----------------hhceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCch
Q 018550 286 LFLK--PMAL----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPV 341 (354)
Q Consensus 286 ~~l~--~~~~----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (354)
+++. ..+. ...+|||+|||+.. ...|+...+.++.+......+ ..++-.+
T Consensus 287 ~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~------~~~p~~~ 360 (475)
T PRK06327 287 DGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDY------NTIPWVI 360 (475)
T ss_pred CCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCCC------CCCCeEE
Confidence 5321 1111 12459999999863 345666777777665433333 1233335
Q ss_pred hhhhhhhhhccc
Q 018550 342 FCLVELCFLHKT 353 (354)
Q Consensus 342 ~~~~~~~~~~~~ 353 (354)
++.+|+...+.|
T Consensus 361 ~~~pe~a~vGlt 372 (475)
T PRK06327 361 YTSPEIAWVGKT 372 (475)
T ss_pred eCCcceEEEeCC
Confidence 666776665544
No 36
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=7.1e-30 Score=237.48 Aligned_cols=281 Identities=17% Similarity=0.209 Sum_probs=180.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
++||+|||||++|+++|..|++.|.+|+|||+ +.+||+|.+ .+|.|.+.++... .+..+.. ... +++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~--------~gc~Psk~l~~~~~~~~~~~~-~~~--~g~ 68 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN--------VGCIPTKALLHSAEVYDEIKH-AKD--YGI 68 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee--------cCccchHHHHHHhhHHHHHHH-HHh--cCC
Confidence 47999999999999999999999999999999 789999987 4889887666543 2332221 111 011
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.... ...++..+.++. ....++.+++ +.. .++..++ . +.+.+...++.
T Consensus 69 ---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~--~-~~~~v~~~~g~-- 127 (461)
T TIGR01350 69 ---EVEN----------VSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVT--VIK-GEAKFLD--P-GTVLVTGENGE-- 127 (461)
T ss_pred ---CCCC----------CcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEcc--C-CEEEEecCCCc--
Confidence 0000 001113333222 2333444665 444 3333332 2 44555544332
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCC-CCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVP-GIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
.++.||+||+||| +.|+.|+++ +... ....+...... ....+++++|||+|.+|+|+|..|++.|.+|+++.+
T Consensus 128 -~~~~~d~lVlAtG--~~p~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~ 201 (461)
T TIGR01350 128 -ETLTAKNIIIATG--SRPRSLPGPFDFDG--EVVITSTGALN-LKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEM 201 (461)
T ss_pred -EEEEeCEEEEcCC--CCCCCCCCCCCCCC--ceEEcchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 4799999999999 788877765 3221 11222222211 122568999999999999999999999999999998
Q ss_pred cCC----------ccccccCCCCC-CeEEecceeEEecCC-cE--EEccC--cEEecCEEEEcccCCCccCccc--ccCc
Q 018550 229 SVA----------DETHEKQPGYD-NMWLHSMVERANEDG-TV--VFRNG--RVVSADVIMHCTGLTGTSTTTL--FLKP 290 (354)
Q Consensus 229 ~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~v--~~~~g--~~~~~D~vi~a~G~~~~~p~~~--~l~~ 290 (354)
.+. ....+.+++.+ +++.++.|++++.++ .+ .+.+| +++++|.+++|+|+. |+++ +++.
T Consensus 202 ~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~---p~~~~l~~~~ 278 (461)
T TIGR01350 202 LDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK---PNTEGLGLEN 278 (461)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc---ccCCCCCcHh
Confidence 764 11222334444 889999999887443 33 34456 479999999999999 6665 2332
Q ss_pred hhh----------------hhceeeeecccchh------hHHHHHHHhhhccCCCc
Q 018550 291 MAL----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 291 ~~~----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~ 324 (354)
.+. ...+|||+|||+.. ...++...+.++.+...
T Consensus 279 ~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (461)
T TIGR01350 279 LGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEP 334 (461)
T ss_pred hCceECCCCcEeeCCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCC
Confidence 211 12459999999863 34666777777766544
No 37
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=6.6e-30 Score=237.53 Aligned_cols=276 Identities=18% Similarity=0.189 Sum_probs=177.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+||||||+|+++|..|++.|.+|+|||+ +.+||+|.+. +|.|.+.+++....-....+.+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~--------gc~psk~l~~~~~~~~~~~~~~------- 66 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNV--------GCIPSKALIAAAEAFHEAKHAE------- 66 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceecc--------ceeeHHHHHHHHHHHHHHHHHH-------
Confidence 57999999999999999999999999999999 6899999874 8998877665443222211111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh------------CCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF------------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.+.+.. .....++.++.++.++....+ +++ +.. .++..+ +.+.+.+ ++
T Consensus 67 ~~gi~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~-----~~~~v~v-~~--- 126 (460)
T PRK06292 67 EFGIHA--------DGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKID--KIK-GTARFV-----DPNTVEV-NG--- 126 (460)
T ss_pred hcCCCc--------CCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCE--EEE-EEEEEc-----cCCEEEE-Cc---
Confidence 111100 001234466666666555433 222 211 222222 2233444 22
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcc-eeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
.++.||+||+||| +. .|.++|.....+. .+++..... ....+++++|||+|++|+|+|..|++.|.+|+++.+
T Consensus 127 -~~~~~d~lIiATG--s~--~p~ipg~~~~~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~ 200 (460)
T PRK06292 127 -ERIEAKNIVIATG--SR--VPPIPGVWLILGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFER 200 (460)
T ss_pred -EEEEeCEEEEeCC--CC--CCCCCCCcccCCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEec
Confidence 3799999999999 55 4455555321112 222222211 123578999999999999999999999999999998
Q ss_pred cCC----------ccccccCCCCCCeEEecceeEEecCC--cEEE--ccC--cEEecCEEEEcccCCCccCccccc--Cc
Q 018550 229 SVA----------DETHEKQPGYDNMWLHSMVERANEDG--TVVF--RNG--RVVSADVIMHCTGLTGTSTTTLFL--KP 290 (354)
Q Consensus 229 ~~~----------~~~~~~l~~~~~~~~~~~v~~v~~~~--~v~~--~~g--~~~~~D~vi~a~G~~~~~p~~~~l--~~ 290 (354)
.+. ....+.+++..++++++.+++++.++ .+++ .++ +++++|.|++|+|++ ||++++ +.
T Consensus 201 ~~~~l~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~---p~~~~l~l~~ 277 (460)
T PRK06292 201 GDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRR---PNTDGLGLEN 277 (460)
T ss_pred CCCcCcchhHHHHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCc---cCCCCCCcHh
Confidence 764 11222333336788899999997543 2443 233 579999999999999 666642 22
Q ss_pred hhhh----------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 291 MALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 291 ~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
.+.. ..+|||+|||+.. ...|+...+.++.+.
T Consensus 278 ~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 278 TGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred hCCEecCCCcEeECCCcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 1111 2449999999863 356677777887664
No 38
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.7e-29 Score=210.80 Aligned_cols=308 Identities=17% Similarity=0.221 Sum_probs=205.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+|.+|||||..|+++|+.++++|.++.|+|..-.+||+|.+ .||.|.+.++....|.....+...
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn--------~GCVPKKvm~~~a~~~~~~~da~~------ 85 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN--------VGCVPKKVMWYAADYSEEMEDAKD------ 85 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe--------eccccceeEEehhhhhHHhhhhhh------
Confidence 378999999999999999999999999999986689999998 599999999998888776655543
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEE----EeCCCcEEEEEeecCCceEEEEeC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~----~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
+.|+... ..-.+|..+.+...+++.++ ++-.+...+..|.-|+ ..+++...|...++. ...|.++
T Consensus 86 -yG~~~~~-------~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~--~~~Ytak 155 (478)
T KOG0405|consen 86 -YGFPINE-------EGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGT--KIVYTAK 155 (478)
T ss_pred -cCCcccc-------ccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCe--eEEEecc
Confidence 2222210 11112344444444444332 1111011112222121 111245566666654 3569999
Q ss_pred EEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----
Q 018550 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----- 231 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----- 231 (354)
++++|+| ++|.+|++||.+. .+.+..+.+.++ .|++++|||+|++|+|+|..++.+|.+++++.|.+.
T Consensus 156 ~iLIAtG--g~p~~PnIpG~E~----gidSDgff~Lee-~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~F 228 (478)
T KOG0405|consen 156 HILIATG--GRPIIPNIPGAEL----GIDSDGFFDLEE-QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGF 228 (478)
T ss_pred eEEEEeC--CccCCCCCCchhh----ccccccccchhh-cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcch
Confidence 9999999 9999999999775 345555555433 679999999999999999999999999999999774
Q ss_pred -----ccccccCCCCC-CeEEecceeEEecCCc----EEEccCcEEecCEEEEcccCCCccCcccccC--chhhh-----
Q 018550 232 -----DETHEKQPGYD-NMWLHSMVERANEDGT----VVFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PMALL----- 294 (354)
Q Consensus 232 -----~~~~~~l~~~~-~~~~~~~v~~v~~~~~----v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~~----- 294 (354)
+...+.++..+ ++|.++.++++.+... +..+.|....+|.++||+|+. ||+.-|. ..+..
T Consensus 229 D~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~---Pntk~L~le~vGVk~~~~g 305 (478)
T KOG0405|consen 229 DEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRK---PNTKGLNLENVGVKTDKNG 305 (478)
T ss_pred hHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCC---CCcccccchhcceeeCCCC
Confidence 23344556666 9999999999875432 455566555699999999999 7766542 22221
Q ss_pred -----------hceeeeecccchhh--HHHHH----HHhhhccCC--CcccccCCCCCccc-cCCchhhh
Q 018550 295 -----------LWMTIVLGHCTSTF--FRQSW----HQAFHLLGY--HRRLSLSPSLNSRA-SGLPVFCL 344 (354)
Q Consensus 295 -----------~~~i~a~GD~~~~~--~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~ 344 (354)
...||++||++.+. ++-+. ..+-.+.+. +.++.| ...++.+ +++|++++
T Consensus 306 ~IivDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY-~nVp~vVFshP~igtV 374 (478)
T KOG0405|consen 306 AIIVDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDY-ENVPCVVFSHPPIGTV 374 (478)
T ss_pred CEEEeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhcCCCCCcccc-ccCceEEEecCCcccc
Confidence 12399999999853 22222 223334332 225555 3344444 55556665
No 39
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.97 E-value=1.6e-29 Score=238.38 Aligned_cols=259 Identities=20% Similarity=0.255 Sum_probs=186.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||||+++|..|+++|++|+|||++ .+||.+....... .++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~i~------------------------------~~p 52 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSEVV------------------------------NYP 52 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccccc------------------------------cCC
Confidence 479999999999999999999999999999995 7888876521100 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+. ......+.+++++.+.+++++ + .+++|+.++.++ +.+.+.+.++ .+.+++||+|
T Consensus 53 g~~--------------~~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~-~~~~V~~~~g-----~~~a~~lVlA 109 (555)
T TIGR03143 53 GIL--------------NTTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDG-DIKTIKTARG-----DYKTLAVLIA 109 (555)
T ss_pred CCc--------------CCCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecC-CEEEEEecCC-----EEEEeEEEEC
Confidence 111 112367888898888888888 5 468899988755 5567776543 6889999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----cccccc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK 237 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~~ 237 (354)
|| +.++.|+++|.+.+.+..++.+..++.....+++++|||+|++|+|+|..|++.|++|+++.+.+. .....+
T Consensus 110 TG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~ 187 (555)
T TIGR03143 110 TG--ASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEK 187 (555)
T ss_pred CC--CccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHH
Confidence 99 788889999976555555555444444556789999999999999999999999999999999774 111222
Q ss_pred C-CC-CCCeEEecceeEEecCCcE---EE---ccCcE----EecCE----EEEcccCCCccCcccccCchhh--------
Q 018550 238 Q-PG-YDNMWLHSMVERANEDGTV---VF---RNGRV----VSADV----IMHCTGLTGTSTTTLFLKPMAL-------- 293 (354)
Q Consensus 238 l-~~-~~~~~~~~~v~~v~~~~~v---~~---~~g~~----~~~D~----vi~a~G~~~~~p~~~~l~~~~~-------- 293 (354)
+ .. ..++++++.|+++.+++.+ .+ .+|+. +++|. |++|+|++ |++++++....
T Consensus 188 ~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~---Pn~~l~~~~l~l~~~G~I~ 264 (555)
T TIGR03143 188 VKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYA---PSSELFKGVVELDKRGYIP 264 (555)
T ss_pred HHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCC---CChhHHhhhcccCCCCeEE
Confidence 2 22 3488999999999866532 22 34543 23676 99999999 88877653211
Q ss_pred -------hhceeeeecccchh-------hHHHHHHHhhhc
Q 018550 294 -------LLWMTIVLGHCTST-------FFRQSWHQAFHL 319 (354)
Q Consensus 294 -------~~~~i~a~GD~~~~-------~~~~~~~~~~~~ 319 (354)
...+|||+|||+.. +..++..+|.++
T Consensus 265 vd~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 265 TNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred eCCccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHH
Confidence 12459999999752 244555555444
No 40
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.97 E-value=1.1e-29 Score=234.36 Aligned_cols=275 Identities=17% Similarity=0.184 Sum_probs=177.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+|||+||+|..+|. +.+|.+|.|+|+ +.+||+|.+ +||+|.|.++..........+.... ++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~-~~~GGtC~n--------~GCiPsK~l~~~a~~~~~~~~~~~~--g~~ 68 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEK-GTFGGTCLN--------VGCIPTKMFVYAAEVAQSIGESARL--GID 68 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeC-CCCCCeeec--------cCccchHHHHHHHHHHHHHHHhhcc--Cee
Confidence 589999999999999864 447999999998 479999998 4999999888765443333222211 110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHH-HHHH--------------hCCcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQN-FARE--------------FGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~--------------~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
. . ..-.++..+.++... ..+. .+++ +..+..+.. +.++|.+.++
T Consensus 69 ~-~------------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~------~~~~V~~~~g 127 (452)
T TIGR03452 69 A-E------------IDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNID--VYDGHARFV------GPRTLRTGDG 127 (452)
T ss_pred C-C------------CCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeE--EEEEEEEEe------cCCEEEECCC
Confidence 0 0 000122444444332 1111 2333 333222111 4456666554
Q ss_pred CCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEE
Q 018550 147 DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (354)
Q Consensus 147 ~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~ 226 (354)
. ++.||+||+||| +.|..|+..+... .....+....... ..+++++|||+|++|+|+|..|++.|.+|+++
T Consensus 128 ~----~~~~d~lIiATG--s~p~~p~~~~~~~--~~~~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli 198 (452)
T TIGR03452 128 E----EITGDQIVIAAG--SRPYIPPAIADSG--VRYHTNEDIMRLP-ELPESLVIVGGGYIAAEFAHVFSALGTRVTIV 198 (452)
T ss_pred c----EEEeCEEEEEEC--CCCCCCCCCCCCC--CEEEcHHHHHhhh-hcCCcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 3 789999999999 8888776433211 1122222221111 24689999999999999999999999999999
Q ss_pred EecCC-----ccc----cccC-CCCCCeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCcccccC--ch
Q 018550 227 SRSVA-----DET----HEKQ-PGYDNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PM 291 (354)
Q Consensus 227 ~r~~~-----~~~----~~~l-~~~~~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~ 291 (354)
.+.+. +.. +.++ ....+++.++.|++++.++ . +.+.+|+++++|.|++|+|++ ||++++. ..
T Consensus 199 ~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~---pn~~~l~~~~~ 275 (452)
T TIGR03452 199 NRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRV---PNGDLLDAEAA 275 (452)
T ss_pred EccCccccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccC---cCCCCcCchhc
Confidence 98764 111 1112 2234788889999997543 2 555678889999999999999 7777642 11
Q ss_pred hhh----------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 292 ALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 292 ~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
+.. ..+|||+|||+.. ...|+...+.++.+.
T Consensus 276 gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 276 GVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred CeeECCCCcEeeCCCcccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 111 2349999999974 355666677777654
No 41
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.97 E-value=9e-30 Score=230.49 Aligned_cols=279 Identities=19% Similarity=0.284 Sum_probs=189.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
|+++|||||||+||+.+|..|++.+ .+|+||++++.. .++ .. ..+.
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----~y~-----------------------~~--~l~~--- 48 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----EYN-----------------------KP--DLSH--- 48 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----CcC-----------------------cC--cCcH---
Confidence 6789999999999999999998864 589999987532 010 00 0000
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHH-HHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLR-YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
.+.. . ....++.. ...+++++++++ ++.+++|++++..+ ..+++. + ..+.||+
T Consensus 49 ~~~~--~--------------~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~---~~v~~~-~----~~~~yd~ 102 (377)
T PRK04965 49 VFSQ--G--------------QRADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAEA---QVVKSQ-G----NQWQYDK 102 (377)
T ss_pred HHhC--C--------------CCHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECCC---CEEEEC-C----eEEeCCE
Confidence 0000 0 00134443 245666778888 88899999998743 355543 3 2799999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccCC-----CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
||+||| +.++.|+++|.+. .+...... ......+++++|||+|++|+|+|..|++.+.+|+++++.+.
T Consensus 103 LVlATG--~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 103 LVLATG--ASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred EEECCC--CCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 999999 7888898988653 22211111 11122568999999999999999999999999999998763
Q ss_pred ----------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhh---
Q 018550 232 ----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL--- 294 (354)
Q Consensus 232 ----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~--- 294 (354)
....+.+++.+ +++.++.|+++..++. +.+.+|+++++|.||+|+|.. |++++++..+..
T Consensus 177 l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~---p~~~l~~~~gl~~~~ 253 (377)
T PRK04965 177 LASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR---PNTALARRAGLAVNR 253 (377)
T ss_pred cchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC---cchHHHHHCCCCcCC
Confidence 11223344455 7888999999986542 667888999999999999999 776665443221
Q ss_pred -----------hceeeeecccchh----------hHHHHHHHhhhccCCCcccccCCCC-CccccCCchhhhhh
Q 018550 295 -----------LWMTIVLGHCTST----------FFRQSWHQAFHLLGYHRRLSLSPSL-NSRASGLPVFCLVE 346 (354)
Q Consensus 295 -----------~~~i~a~GD~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 346 (354)
..+|||+|||+.. ...|+...|.++.|....+...+.. ...++++|+.+..+
T Consensus 254 gi~vd~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 327 (377)
T PRK04965 254 GIVVDSYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGE 327 (377)
T ss_pred CEEECCCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCC
Confidence 3459999999852 3456677788888876554432221 12236666655544
No 42
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=6.1e-30 Score=237.53 Aligned_cols=310 Identities=18% Similarity=0.233 Sum_probs=187.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (354)
++||+||||||+|+++|..|+++|.+|+|||++ .+||+|.+. +|.|.+.++.... +..+...... +++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~--------gciPsk~l~~~~~~~~~~~~~~~~--~gi 72 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV--------GCIPSKALLRNAELAHIFTKEAKT--FGI 72 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC--------CccccHHHHhhHHHHHHHHHHHHh--cCC
Confidence 379999999999999999999999999999984 799999884 8999887665432 2222211111 011
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCcceEEe-ceEEEEEEE----eCCCcEEEEEeecCCceEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQVVRL-HTEVLNARL----VESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~v~~-~~~v~~i~~----~~~~~~~v~~~~g~~~~~~~ 153 (354)
.. ....++..+..+.++..++. ++. ..+ ...|+.+.. .+...+.+...++. ..++
T Consensus 73 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~--~~~~ 134 (466)
T PRK07818 73 SG--------------EVTFDYGAAFDRSRKVAEGRVKGVH--FLMKKNKITEIHGYGTFTDANTLEVDLNDGG--TETV 134 (466)
T ss_pred Cc--------------CcccCHHHHHHHHHHHHHHHHHHHH--HHHHhCCCEEEEEEEEEcCCCEEEEEecCCC--eeEE
Confidence 00 00112233333333332211 111 000 011222221 11134445443332 3479
Q ss_pred EeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 154 TFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
.||+||+||| +.|+.| ||.+. ....+.+..... ....+++++|||+|++|+|+|..|++.|.+|+++.+.+.
T Consensus 135 ~~d~lViATG--s~p~~~--pg~~~-~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l 208 (466)
T PRK07818 135 TFDNAIIATG--SSTRLL--PGTSL-SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL 208 (466)
T ss_pred EcCEEEEeCC--CCCCCC--CCCCC-CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 9999999999 777654 44321 122333322111 123568999999999999999999999999999998763
Q ss_pred --------ccccccCCCCC-CeEEecceeEEecCCc---EEEc--cC--cEEecCEEEEcccCCCccCccccc--Cchhh
Q 018550 232 --------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFR--NG--RVVSADVIMHCTGLTGTSTTTLFL--KPMAL 293 (354)
Q Consensus 232 --------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~--~g--~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~ 293 (354)
....+.+++.+ +++.++.|+++..++. +++. +| +++++|.||+|+|++ ||++++ ...+.
T Consensus 209 ~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~---pn~~~l~l~~~g~ 285 (466)
T PRK07818 209 PNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFA---PRVEGYGLEKTGV 285 (466)
T ss_pred CccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcc---cCCCCCCchhcCc
Confidence 12233344555 8999999999985542 3443 56 479999999999999 666642 22211
Q ss_pred h----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhc
Q 018550 294 L----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLH 351 (354)
Q Consensus 294 ~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (354)
. ..+|||+|||+.. ...|+...+.++.+..... + -....++.-+++.+|+.+.+
T Consensus 286 ~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~-~---~~~~~~p~~~~~~p~~a~vG 361 (466)
T PRK07818 286 ALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLE-L---GDYRMMPRATFCQPQVASFG 361 (466)
T ss_pred EECCCCcEeeCCCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCCCCc-c---CccCCCCeEEECCCCeEEEe
Confidence 1 2349999999863 4566777788886543210 0 01122233355556665555
Q ss_pred cc
Q 018550 352 KT 353 (354)
Q Consensus 352 ~~ 353 (354)
.|
T Consensus 362 lt 363 (466)
T PRK07818 362 LT 363 (466)
T ss_pred CC
Confidence 44
No 43
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.97 E-value=5.4e-30 Score=235.72 Aligned_cols=242 Identities=16% Similarity=0.248 Sum_probs=164.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|||||||++|+.+|..|+++ +.+|+|||+++.++ +.. .
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~-~---------------------------------- 43 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FAN-C---------------------------------- 43 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--ccc-C----------------------------------
Confidence 35899999999999999999987 57999999986543 110 0
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHH-HHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYL-QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDA 157 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~ 157 (354)
.+++... .....+.++..+. .++.++.+++ ++.+++|++|+.++ +. |.+.++. +...++.||+
T Consensus 44 --~lp~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~~-~~--v~~~~~~~~~~~~~~yd~ 108 (438)
T PRK13512 44 --ALPYYIG--------EVVEDRKYALAYTPEKFYDRKQIT--VKTYHEVIAINDER-QT--VTVLNRKTNEQFEESYDK 108 (438)
T ss_pred --Ccchhhc--------CccCCHHHcccCCHHHHHHhCCCE--EEeCCEEEEEECCC-CE--EEEEECCCCcEEeeecCE
Confidence 0000000 0000112222222 3344566888 88889999998765 44 4444332 2234679999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
||+||| +.|+.|.+++... +......+. ....+++++|||+|.+|+|+|..|++.|.+|+++++.+
T Consensus 109 lviAtG--s~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 109 LILSPG--ASANSLGFESDIT-----FTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred EEECCC--CCCCCCCCCCCCe-----EEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 999999 8888777543221 111111000 11246899999999999999999999999999999876
Q ss_pred C----------ccccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCchhhh-----
Q 018550 231 A----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL----- 294 (354)
Q Consensus 231 ~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~----- 294 (354)
. ....+.+++.+ +++.++.|+++++.. +++++|+++++|.|++|+|++ ||+++++..+..
T Consensus 182 ~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-v~~~~g~~~~~D~vl~a~G~~---pn~~~l~~~gl~~~~~G 257 (438)
T PRK13512 182 KINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE-VTFKSGKVEHYDMIIEGVGTH---PNSKFIESSNIKLDDKG 257 (438)
T ss_pred ccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCE-EEECCCCEEEeCEEEECcCCC---cChHHHHhcCcccCCCC
Confidence 4 12233445555 889999999997654 888888899999999999999 777766544321
Q ss_pred -----------hceeeeecccch
Q 018550 295 -----------LWMTIVLGHCTS 306 (354)
Q Consensus 295 -----------~~~i~a~GD~~~ 306 (354)
..+|||+|||+.
T Consensus 258 ~i~Vd~~~~t~~~~IyA~GD~~~ 280 (438)
T PRK13512 258 FIPVNDKFETNVPNIYAIGDIIT 280 (438)
T ss_pred cEEECCCcccCCCCEEEeeeeEE
Confidence 134999999985
No 44
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=1.4e-29 Score=230.48 Aligned_cols=279 Identities=13% Similarity=0.142 Sum_probs=186.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||+||+.+|..|++++. +|+|+++++.+. +... . +...+...
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~--y~r~-~------------------l~~~~~~~------- 54 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP--YERP-P------------------LSKSMLLE------- 54 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC--CCCC-C------------------CCHHHHCC-------
Confidence 3689999999999999999999886 799999875431 0000 0 00000000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+... ..+ ....++....+++ ++.++.|..++..+ ..+.+.++. ++.||+||
T Consensus 55 ----~~~~---------~~~-------~~~~~~~~~~~i~--~~~g~~V~~id~~~---~~v~~~~g~----~~~yd~LV 105 (396)
T PRK09754 55 ----DSPQ---------LQQ-------VLPANWWQENNVH--LHSGVTIKTLGRDT---RELVLTNGE----SWHWDQLF 105 (396)
T ss_pred ----CCcc---------ccc-------cCCHHHHHHCCCE--EEcCCEEEEEECCC---CEEEECCCC----EEEcCEEE
Confidence 0000 000 0012233456787 88888999998743 456666654 79999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--- 231 (354)
+||| +.|+.+++++... ...+......+ .....+++++|||+|.+|+|+|..|++.|.+|+++++.+.
T Consensus 106 iATG--s~~~~~p~~~~~~--~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 181 (396)
T PRK09754 106 IATG--AAARPLPLLDALG--ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG 181 (396)
T ss_pred EccC--CCCCCCCCCCcCC--CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence 9999 7777666554322 12222111111 1122578999999999999999999999999999998663
Q ss_pred ---c-----cccccCCCCC-CeEEecceeEEecCCc--EEEccCcEEecCEEEEcccCCCccCcccccCchhhh------
Q 018550 232 ---D-----ETHEKQPGYD-NMWLHSMVERANEDGT--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL------ 294 (354)
Q Consensus 232 ---~-----~~~~~l~~~~-~~~~~~~v~~v~~~~~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------ 294 (354)
+ ...+.+++.+ +++.++.|+++..++. +.+.+|+++++|.|++|+|.. ||++++...+..
T Consensus 182 ~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~---pn~~l~~~~gl~~~~gi~ 258 (396)
T PRK09754 182 RNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGIS---ANDQLAREANLDTANGIV 258 (396)
T ss_pred hhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCC---hhhHHHHhcCCCcCCCEE
Confidence 1 1222334445 8899999999976433 567888999999999999999 777765433321
Q ss_pred --------hceeeeecccch---------------hhHHHHHHHhhhccCCCcccccCCCCCccccCCchhhh
Q 018550 295 --------LWMTIVLGHCTS---------------TFFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCL 344 (354)
Q Consensus 295 --------~~~i~a~GD~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (354)
..+|||+|||+. ....|+...|.++.+....+...|.+++..+++++...
T Consensus 259 vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~~~~~~~~~~~ 331 (396)
T PRK09754 259 IDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFI 331 (396)
T ss_pred ECCCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEeCCccEEEe
Confidence 244999999984 23557777888998877666666677777677654443
No 45
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=2.7e-29 Score=237.35 Aligned_cols=332 Identities=15% Similarity=0.172 Sum_probs=196.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC-CCccceeecCCCCCCCCCCCCCCCCcccccccccchhccc-ccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP-RELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (354)
.+||+|||+|++|..+|..++++|.+|+|||++ +.+||+|.+ .||+|.+.++..........+.. ...++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn--------~GCiPsK~l~~~a~~~~~~~~~~~~~~~G 187 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN--------VGCIPSKALLYATGKYRELKNLAKLYTYG 187 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE--------eCCcchHHHHHHHHHHHHHHhccccccCC
Confidence 469999999999999999999999999999974 369999998 49999998887654332222221 01112
Q ss_pred cc--CCCCCccCCCC-CCC--CCCCCCHHHHHHHHHHHHHHhC--Ccc-----eEEeceEEEEEEEeCC---CcEEEEEe
Q 018550 80 FQ--AYPFVARNYEG-SVD--LRRYPGHEEVLRYLQNFAREFG--VDQ-----VVRLHTEVLNARLVES---NKWKVKSR 144 (354)
Q Consensus 80 ~~--~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~--~~~-----~v~~~~~v~~i~~~~~---~~~~v~~~ 144 (354)
+. .|+.......+ ... ...-.++..+.++.+...+++. +.. .+....+.+++..... +..++...
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~ 267 (659)
T PTZ00153 188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267 (659)
T ss_pred eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence 11 01100000000 000 0111345666666655554431 110 0111122233332110 12233332
Q ss_pred -ecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEE
Q 018550 145 -KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV 223 (354)
Q Consensus 145 -~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v 223 (354)
++ .++.||+||+||| +.|+.|+..+... ..++++...... ...+++++|||+|++|+|+|..|++.|++|
T Consensus 268 ~~g----~~i~ad~lIIATG--S~P~~P~~~~~~~--~~V~ts~d~~~l-~~lpk~VvIVGgG~iGvE~A~~l~~~G~eV 338 (659)
T PTZ00153 268 KSG----KEFKVKNIIIATG--STPNIPDNIEVDQ--KSVFTSDTAVKL-EGLQNYMGIVGMGIIGLEFMDIYTALGSEV 338 (659)
T ss_pred cCC----EEEECCEEEEcCC--CCCCCCCCCCCCC--CcEEehHHhhhh-hhcCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence 22 3789999999999 8888887555432 123333222221 124689999999999999999999999999
Q ss_pred EEEEecCC-----cc-----ccccC-CCCC-CeEEecceeEEecCC--c-EE--Ecc-------C--------cEEecCE
Q 018550 224 HIASRSVA-----DE-----THEKQ-PGYD-NMWLHSMVERANEDG--T-VV--FRN-------G--------RVVSADV 271 (354)
Q Consensus 224 ~~~~r~~~-----~~-----~~~~l-~~~~-~~~~~~~v~~v~~~~--~-v~--~~~-------g--------~~~~~D~ 271 (354)
+++++.+. +. ..+.+ ++.+ +++.++.|++++.++ . +. +.+ + +++++|.
T Consensus 339 TLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~ 418 (659)
T PTZ00153 339 VSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS 418 (659)
T ss_pred EEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCE
Confidence 99999764 11 12222 3344 889999999997543 1 33 221 1 2799999
Q ss_pred EEEcccCCCccCcccccC--chhh---------h------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 272 IMHCTGLTGTSTTTLFLK--PMAL---------L------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 272 vi~a~G~~~~~p~~~~l~--~~~~---------~------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
||||+|++ ||+++|. ..+. + ..+|||+|||+.. +..|+...+.++.+.
T Consensus 419 VlvAtGr~---Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 419 CLVATGRK---PNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred EEEEECcc---cCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 99999999 7776542 1110 0 1469999999973 345666667777654
Q ss_pred Ccc-ccc------CCCCCccccCCchhhhhhhhhhccc
Q 018550 323 HRR-LSL------SPSLNSRASGLPVFCLVELCFLHKT 353 (354)
Q Consensus 323 ~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (354)
... +.. ...+..+.++--+++.+|+.+.+.|
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlT 533 (659)
T PTZ00153 496 GKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLT 533 (659)
T ss_pred CccccccccccccccccccCcCCEEEECcCceEEeeCC
Confidence 210 000 0011122233335788888877765
No 46
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.96 E-value=4.4e-29 Score=210.85 Aligned_cols=312 Identities=19% Similarity=0.230 Sum_probs=198.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccc-ccccccchh-cccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLRV-NLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 79 (354)
.+||+|||+||+|..||.++++.|++..++|++..+||+|.+ .||+|.+.++. +.+|..+.. +......+
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn--------vGcIPSKALL~nSh~yh~~q~~~~~~rGi~ 110 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN--------VGCIPSKALLNNSHLYHEAQHEDFASRGID 110 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee--------ccccccHHHhhhhHHHHHHhhhHHHhcCcc
Confidence 479999999999999999999999999999999999999998 59999998766 555655544 33333333
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCcceEEeceEEEEEEEe----CCCcEEEEEeecCCceEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~v~~~~~v~~i~~~----~~~~~~v~~~~g~~~~~~~ 153 (354)
.+...++ ...++......++++ +++..+. ..+|+-+.-. +.....+...++ +...+
T Consensus 111 vs~~~~d---------------l~~~~~~k~~~vk~Lt~gi~~lfk-knkV~~~kG~gsf~~p~~V~v~k~dg--~~~ii 172 (506)
T KOG1335|consen 111 VSSVSLD---------------LQAMMKAKDNAVKQLTGGIENLFK-KNKVTYVKGFGSFLDPNKVSVKKIDG--EDQII 172 (506)
T ss_pred ccceecC---------------HHHHHHHHHHHHHHHhhHHHHHhh-hcCeEEEeeeEeecCCceEEEeccCC--CceEE
Confidence 3222221 134444443333332 1111011 1111111110 113344444444 45799
Q ss_pred EeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 154 TFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
+++++|+||| |. .+++||+.--...++.+.-... -..-|++++|||+|.+|+|+..-+.++|.+||+++-.+.
T Consensus 173 ~aKnIiiATG--Se--V~~~PGI~IDekkIVSStgALs-L~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~ 247 (506)
T KOG1335|consen 173 KAKNIIIATG--SE--VTPFPGITIDEKKIVSSTGALS-LKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG 247 (506)
T ss_pred eeeeEEEEeC--Cc--cCCCCCeEecCceEEecCCccc-hhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc
Confidence 9999999999 52 2334565432234444332222 233579999999999999999999999999999998775
Q ss_pred ---ccc-----cccCCCCC-CeEEecceeEEecCC--c--EEEcc---C--cEEecCEEEEcccCCCccCcccccC--ch
Q 018550 232 ---DET-----HEKQPGYD-NMWLHSMVERANEDG--T--VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLK--PM 291 (354)
Q Consensus 232 ---~~~-----~~~l~~~~-~~~~~~~v~~v~~~~--~--v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~--~~ 291 (354)
+.+ .+-|.+.+ .+++++.+..++.++ . |++.+ + ++++||.+++++|++ |.++-|. ..
T Consensus 248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr---P~t~GLgle~i 324 (506)
T KOG1335|consen 248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR---PFTEGLGLEKI 324 (506)
T ss_pred cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc---ccccCCChhhc
Confidence 222 22234444 899999999998544 3 44443 2 578999999999999 8776652 11
Q ss_pred hhhh----------------ceeeeecccchhhHHH------HHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhh
Q 018550 292 ALLL----------------WMTIVLGHCTSTFFRQ------SWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCF 349 (354)
Q Consensus 292 ~~~~----------------~~i~a~GD~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (354)
+... ..||++||+...++.. .....-.+.+-+.- ...+.++--.+|-||+.+
T Consensus 325 Gi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~h------v~ynciP~v~ythPEvaw 398 (506)
T KOG1335|consen 325 GIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGH------VDYNCIPSVVYTHPEVAW 398 (506)
T ss_pred ccccccccceeccccccccCCceEEecccCCcchhhhhhhhhchhheeeecccCcc------cccCCCCceeecccceee
Confidence 1111 2299999999865433 22222233232222 233443334888899999
Q ss_pred hccc
Q 018550 350 LHKT 353 (354)
Q Consensus 350 ~~~~ 353 (354)
.+||
T Consensus 399 VG~T 402 (506)
T KOG1335|consen 399 VGKT 402 (506)
T ss_pred eccc
Confidence 9988
No 47
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-28 Score=193.94 Aligned_cols=257 Identities=19% Similarity=0.265 Sum_probs=198.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC----CccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE----QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
-+|+|||+|||+-.+|..+++..++.+|||-.. .+||++.......
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~ve------------------------------ 58 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVE------------------------------ 58 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccc------------------------------
Confidence 379999999999999999999999999999631 2345554432221
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
.|++||... ...++++.+++...++|.+ +.. ..|.+++... ..|.+.+..+ .+.+|.|
T Consensus 59 NfPGFPdgi-------------~G~~l~d~mrkqs~r~Gt~--i~t-EtVskv~~ss-kpF~l~td~~-----~v~~~av 116 (322)
T KOG0404|consen 59 NFPGFPDGI-------------TGPELMDKMRKQSERFGTE--IIT-ETVSKVDLSS-KPFKLWTDAR-----PVTADAV 116 (322)
T ss_pred cCCCCCccc-------------ccHHHHHHHHHHHHhhcce--eee-eehhhccccC-CCeEEEecCC-----ceeeeeE
Confidence 122333221 1278999999999999998 554 7788998877 8899888664 7899999
Q ss_pred EEeeCCCCCcccCCCCCC--CCCCcceeecccCCCCCC--CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc--
Q 018550 159 VVCNGHFSVPRLAQVPGI--DSWPGKQMHSHNYRIPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-- 232 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~--~~~~~~~~~~~~~~~~~~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-- 232 (354)
|+||| +..+...+||. .+|..+.+..|..++... ++.|..+|||||.+|+|-|..|.+-+++|.+++|++.-
T Consensus 117 I~atG--AsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA 194 (322)
T KOG0404|consen 117 ILATG--ASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA 194 (322)
T ss_pred EEecc--cceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH
Confidence 99999 56666667765 347788888888888754 79999999999999999999999999999999999872
Q ss_pred --cccccCCCCC--CeEEecceeEEecCCc----EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhhhh----
Q 018550 233 --ETHEKQPGYD--NMWLHSMVERANEDGT----VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMALLL---- 295 (354)
Q Consensus 233 --~~~~~l~~~~--~~~~~~~v~~v~~~~~----v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~~---- 295 (354)
...++.++.. +++.++.+.+..+++. +.+.+ | +.++.+-+++++|-. |++.|+++....+
T Consensus 195 s~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~---Pat~~l~gqve~d~~GY 271 (322)
T KOG0404|consen 195 SKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHS---PATKFLKGQVELDEDGY 271 (322)
T ss_pred HHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCC---chhhHhcCceeeccCce
Confidence 2233344444 6788888887777653 44432 3 678999999999999 9999998744432
Q ss_pred ------------ceeeeecccchhhHHHHHHHh
Q 018550 296 ------------WMTIVLGHCTSTFFRQSWHQA 316 (354)
Q Consensus 296 ------------~~i~a~GD~~~~~~~~~~~~~ 316 (354)
.++||+||+....|+|+..+|
T Consensus 272 i~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaA 304 (322)
T KOG0404|consen 272 IVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAA 304 (322)
T ss_pred EEeccCcccccccceeeccccchHHHHHHHhhh
Confidence 239999999999999988665
No 48
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.96 E-value=3e-29 Score=208.02 Aligned_cols=195 Identities=33% Similarity=0.565 Sum_probs=134.7
Q ss_pred EEEcCChHHHHHHHHHHHcCCc-EEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC-
Q 018550 6 AVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY- 83 (354)
Q Consensus 6 vIIG~G~aG~~~a~~l~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (354)
+||||||+|+++|..|.++|.+ +++||+++.+||.|...+..... ..|. .+. ..+.++++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~---~~~~-------~~~--------~~~~~~~~~ 62 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRL---HSPS-------FFS--------SDFGLPDFE 62 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT----BSSS-------CCT--------GGSS--CCC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCcc---ccCc-------ccc--------ccccCCccc
Confidence 6999999999999999999998 99999999999999863221100 0000 000 00000000
Q ss_pred --CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 84 --PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
...... .......+++..++.+|+++++++++++ ++++++|+++.+++ +.|+|++.++. ++.+|.||+|
T Consensus 63 ~~~~~~~~--~~~~~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~-~~w~v~~~~~~----~~~a~~VVlA 133 (203)
T PF13738_consen 63 SFSFDDSP--EWRWPHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDG-DGWTVTTRDGR----TIRADRVVLA 133 (203)
T ss_dssp HSCHHHHH--HHHHSBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEET-TTEEEEETTS-----EEEEEEEEE-
T ss_pred ccccccCC--CCCCCcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEec-cEEEEEEEecc----eeeeeeEEEe
Confidence 000000 0011345677899999999999999999 99999999999998 77999998873 8899999999
Q ss_pred eCCCCCcccCCCCC-CCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 162 NGHFSVPRLAQVPG-IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 162 tG~~s~~~~p~~~g-~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
||..+.|+.|.+++ ... ..+|+..+.+...+++++|+|||+|.+|+|+|..|++.|++|++++|++
T Consensus 134 tG~~~~p~~p~~~g~~~~---~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 134 TGHYSHPRIPDIPGSAFR---PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp --SSCSB---S-TTGGCS---EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred eeccCCCCcccccccccc---ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 99888999999998 222 6788888888778899999999999999999999999999999999987
No 49
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.96 E-value=6.9e-29 Score=241.69 Aligned_cols=258 Identities=16% Similarity=0.225 Sum_probs=183.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCcEEEEeeCCCcc-ceeecCCCCCCCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVG-GSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~----g~~v~lie~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+++|||||+|+||+.+|..|.++ +++|+||++++.++ ..+.. ...
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L----------------------~~~-------- 52 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHL----------------------SSY-------- 52 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcc----------------------hHh--------
Confidence 46899999999999999999865 47999999976541 00000 000
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
+... ..+++.....++..+.+++ ++.+++|++|+.. ...|++.++. .+.||
T Consensus 53 ------~~~~--------------~~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~---~~~V~~~~G~----~i~yD 103 (847)
T PRK14989 53 ------FSHH--------------TAEELSLVREGFYEKHGIK--VLVGERAITINRQ---EKVIHSSAGR----TVFYD 103 (847)
T ss_pred ------HcCC--------------CHHHccCCCHHHHHhCCCE--EEcCCEEEEEeCC---CcEEEECCCc----EEECC
Confidence 0000 0133333445556677888 8888999999763 3566666654 79999
Q ss_pred EEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+||+||| +.|+.|+++|.+.. ..+......+. ....+++++|||+|++|+|+|..|++.|.+|+++++.+.
T Consensus 104 ~LVIATG--s~p~~p~ipG~~~~--~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ 179 (847)
T PRK14989 104 KLIMATG--SYPWIPPIKGSETQ--DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM 179 (847)
T ss_pred EEEECCC--CCcCCCCCCCCCCC--CeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 9999999 88999999987642 11211111111 122568999999999999999999999999999998774
Q ss_pred -----------ccccccCCCCC-CeEEecceeEEecCC-----cEEEccCcEEecCEEEEcccCCCccCcccccCchhhh
Q 018550 232 -----------DETHEKQPGYD-NMWLHSMVERANEDG-----TVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL 294 (354)
Q Consensus 232 -----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-----~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~ 294 (354)
....+.+++.+ +++.++.++++..++ .+++++|+++++|+||+|+|++ ||+++++..+..
T Consensus 180 ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r---Pn~~L~~~~Gl~ 256 (847)
T PRK14989 180 LMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR---PQDKLATQCGLA 256 (847)
T ss_pred chhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc---cCchHHhhcCcc
Confidence 11233445555 899999999997432 1677899999999999999999 888876544432
Q ss_pred ----------------hceeeeecccchh----------hHHHHHHHhhhccCCCcc
Q 018550 295 ----------------LWMTIVLGHCTST----------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 295 ----------------~~~i~a~GD~~~~----------~~~~~~~~~~~~~~~~~~ 325 (354)
..+|||+|||+.. .+.++...|.++.|....
T Consensus 257 ~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~ 313 (847)
T PRK14989 257 VAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENA 313 (847)
T ss_pred CCCCCcEEECCCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcC
Confidence 2349999999962 356777788888876544
No 50
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.96 E-value=3.3e-28 Score=225.41 Aligned_cols=265 Identities=20% Similarity=0.259 Sum_probs=175.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|+|||||++|+++|..|++++ .+|+|||+++.++ +.. +.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~-~~---------------------------------- 43 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGA-CG---------------------------------- 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eec-CC----------------------------------
Confidence 47999999999999999999975 5899999986542 110 00
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
+++.. ...+....++..+..+.+.+.+++ ++++++|++|+.++ +.+.+.... .+....+.||+||+
T Consensus 44 --~~~~~--------~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~-~~v~~~~~~-~~~~~~~~yd~lvi 109 (444)
T PRK09564 44 --LPYFV--------GGFFDDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKN-KTITVKNLK-TGSIFNDTYDKLMI 109 (444)
T ss_pred --CceEe--------ccccCCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCC-CEEEEEECC-CCCEEEecCCEEEE
Confidence 00000 000011133344445556667888 88899999998765 444443321 11122344999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
||| ++|+.|.++|.+.. ..++...+.+. ....+++++|||+|++|+|+|..+.+.|++|+++.+.+.
T Consensus 110 AtG--~~~~~~~i~g~~~~--~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 185 (444)
T PRK09564 110 ATG--ARPIIPPIKNINLE--NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL 185 (444)
T ss_pred CCC--CCCCCCCCCCcCCC--CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 999 88888888886531 22322221110 112468999999999999999999999999999988663
Q ss_pred ---------ccccccCCCCC-CeEEecceeEEecCCcE--EEccCcEEecCEEEEcccCCCccCcccccCchhhh-----
Q 018550 232 ---------DETHEKQPGYD-NMWLHSMVERANEDGTV--VFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL----- 294 (354)
Q Consensus 232 ---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v--~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~----- 294 (354)
+...+.+++.+ +++.++.|+++.+++.+ ...++.++++|.+++|+|+. |+++++++.+..
T Consensus 186 ~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~---p~~~~l~~~gl~~~~~g 262 (444)
T PRK09564 186 PDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVK---PNTEFLEDTGLKTLKNG 262 (444)
T ss_pred chhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCC---cCHHHHHhcCccccCCC
Confidence 11122334444 88899999999765542 23455689999999999999 777766554332
Q ss_pred -----------hceeeeecccchh----------------hHHHHHHHhhhccCCCcc
Q 018550 295 -----------LWMTIVLGHCTST----------------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 295 -----------~~~i~a~GD~~~~----------------~~~~~~~~~~~~~~~~~~ 325 (354)
..+|||+|||+.. ...|+...+.++.+....
T Consensus 263 ~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~ 320 (444)
T PRK09564 263 AIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVS 320 (444)
T ss_pred CEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCC
Confidence 1349999999862 235566667788765443
No 51
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.96 E-value=1e-28 Score=217.62 Aligned_cols=244 Identities=17% Similarity=0.242 Sum_probs=167.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
++++|||||||++|+.+|..|.+.. .++++||+++..- +..+......+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl---------------------------~~plL~eva~g-- 52 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL---------------------------FTPLLYEVATG-- 52 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc---------------------------cchhhhhhhcC--
Confidence 4689999999999999999999975 8999999976331 11111111110
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
..+..++...++..+...+ ++ + ...+|++|+.++ .+|++.++. ++.||+
T Consensus 53 --------------------~l~~~~i~~p~~~~~~~~~~v~--~-~~~~V~~ID~~~---k~V~~~~~~----~i~YD~ 102 (405)
T COG1252 53 --------------------TLSESEIAIPLRALLRKSGNVQ--F-VQGEVTDIDRDA---KKVTLADLG----EISYDY 102 (405)
T ss_pred --------------------CCChhheeccHHHHhcccCceE--E-EEEEEEEEcccC---CEEEeCCCc----cccccE
Confidence 0111455555666666444 54 3 358899999854 566666643 899999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccC-----------CCCCCC----CCCeEEEEccCCCHHHHHHHHhccC--
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-----------RIPNPF----QDQVVILIGHYASGLDIKRDLAGFA-- 220 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~-----------~~~~~~----~~~~v~ViG~G~~g~e~a~~l~~~g-- 220 (354)
||+|+| +.+..+.++|..++....-...+. ...... .-.+++|+|||++|+|+|.+|+++-
T Consensus 103 LVvalG--s~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~ 180 (405)
T COG1252 103 LVVALG--SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHR 180 (405)
T ss_pred EEEecC--CcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHH
Confidence 999999 899999999977642111110000 000101 1247999999999999999997642
Q ss_pred -----------CEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCcEEEccCc-EEecCEEEEccc
Q 018550 221 -----------KEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGR-VVSADVIMHCTG 277 (354)
Q Consensus 221 -----------~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~-~~~~D~vi~a~G 277 (354)
.+|+++.+.+. +...+.|++.+ ++++++.|+++++++ |++++|. +|++|++|||+|
T Consensus 181 l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-v~~~~g~~~I~~~tvvWaaG 259 (405)
T COG1252 181 LLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-VTLKDGEEEIPADTVVWAAG 259 (405)
T ss_pred HhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-EEEccCCeeEecCEEEEcCC
Confidence 17999999885 33344556666 999999999999999 9999987 499999999999
Q ss_pred CCCccCcccccCchhhh---------------hceeeeecccchh
Q 018550 278 LTGTSTTTLFLKPMALL---------------LWMTIVLGHCTST 307 (354)
Q Consensus 278 ~~~~~p~~~~l~~~~~~---------------~~~i~a~GD~~~~ 307 (354)
.+++ |...-+.+.... ..+||++|||+.-
T Consensus 260 v~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~ 303 (405)
T COG1252 260 VRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAV 303 (405)
T ss_pred CcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccC
Confidence 9954 222211111111 1339999999963
No 52
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.96 E-value=5.4e-28 Score=235.77 Aligned_cols=254 Identities=14% Similarity=0.200 Sum_probs=180.3
Q ss_pred EEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccce-eecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 5 VAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGS-WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 5 vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
|||||+|+||+.+|.+|++. +++|+|||+++.++-. +.. +
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L------------------------------~------ 44 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILL------------------------------S------ 44 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccc------------------------------c------
Confidence 68999999999999999875 4699999998754200 000 0
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.+.. ...+.+++.....+++++.+++ ++++++|++|+.. .++|.+.++. ++.||+||+
T Consensus 45 -~~l~------------g~~~~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~---~k~V~~~~g~----~~~yD~LVl 102 (785)
T TIGR02374 45 -SVLQ------------GEADLDDITLNSKDWYEKHGIT--LYTGETVIQIDTD---QKQVITDAGR----TLSYDKLIL 102 (785)
T ss_pred -HHHC------------CCCCHHHccCCCHHHHHHCCCE--EEcCCeEEEEECC---CCEEEECCCc----EeeCCEEEE
Confidence 0000 0001133333334556677888 8999999999874 3567776664 799999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---- 231 (354)
||| +.|+.|+++|.+.. .++......+ .....+++++|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus 103 ATG--s~p~~p~ipG~~~~--~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~ 178 (785)
T TIGR02374 103 ATG--SYPFILPIPGADKK--GVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK 178 (785)
T ss_pred CCC--CCcCCCCCCCCCCC--CEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh
Confidence 999 88999999987642 1222111101 0112468999999999999999999999999999998764
Q ss_pred -------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhh------
Q 018550 232 -------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL------ 294 (354)
Q Consensus 232 -------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------ 294 (354)
....+.+++.+ +++.++.++++..++. |+++||+++++|+||+|+|++ ||++++...+..
T Consensus 179 ~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~---Pn~~la~~~gl~~~ggI~ 255 (785)
T TIGR02374 179 QLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIR---PNDELAVSAGIKVNRGII 255 (785)
T ss_pred hcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCC---cCcHHHHhcCCccCCCEE
Confidence 11223344555 8999999999876543 778899999999999999999 777776443221
Q ss_pred --------hceeeeecccch----------hhHHHHHHHhhhccCCC
Q 018550 295 --------LWMTIVLGHCTS----------TFFRQSWHQAFHLLGYH 323 (354)
Q Consensus 295 --------~~~i~a~GD~~~----------~~~~~~~~~~~~~~~~~ 323 (354)
..+|||+|||+. +.+.|+...|.++.|..
T Consensus 256 Vd~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 256 VNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred ECCCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 245999999985 23577888888998765
No 53
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.4e-28 Score=200.72 Aligned_cols=256 Identities=21% Similarity=0.257 Sum_probs=204.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||.++|...++.|++.-++- +.+||+....-.+.| |.
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IEN------------------------------fI 258 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIEN------------------------------FI 258 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchhh------------------------------ee
Confidence 4799999999999999999999999988885 478888876422221 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC--CCcEEEEEeecCCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+.+.-.. .++...+.+..+++.+. +..-.+.+++.+.. .+...+++++|. .++++.+|
T Consensus 259 sv~~teG--------------pkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGa----vLkaktvI 318 (520)
T COG3634 259 SVPETEG--------------PKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGA----VLKARTVI 318 (520)
T ss_pred ccccccc--------------hHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCc----eeccceEE
Confidence 2222222 77888899999998888 66667777887742 256788999987 89999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---c-ccc
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---D-ETH 235 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---~-~~~ 235 (354)
+||| +++|...+||.++|..+....|..|+...+++|+|+|||||.+|+|.|..|+..-..||++.-.+. + -+.
T Consensus 319 lstG--ArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq 396 (520)
T COG3634 319 LATG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQ 396 (520)
T ss_pred EecC--cchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHH
Confidence 9999 899999999999999999999999999999999999999999999999999999999999998775 2 233
Q ss_pred ccCCC--CCCeEEecceeEEecCCc----EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhhhh---------
Q 018550 236 EKQPG--YDNMWLHSMVERANEDGT----VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMALLL--------- 295 (354)
Q Consensus 236 ~~l~~--~~~~~~~~~v~~v~~~~~----v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~~--------- 295 (354)
+++.. +..++.+.+.+++.+++. +.+.+ | ..+.-+-|++-+|.. ||++||++.....
T Consensus 397 ~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~---PNT~WLkg~vel~~rGEIivD~ 473 (520)
T COG3634 397 DKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLL---PNTEWLKGAVELNRRGEIIVDA 473 (520)
T ss_pred HHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecc---cChhHhhchhhcCcCccEEEec
Confidence 44433 347889999999998854 44443 3 345677899999999 9999998775542
Q ss_pred ------ceeeeecccchhhHHHHHH
Q 018550 296 ------WMTIVLGHCTSTFFRQSWH 314 (354)
Q Consensus 296 ------~~i~a~GD~~~~~~~~~~~ 314 (354)
.+|||+|||...++.|...
T Consensus 474 ~g~TsvpGvFAAGD~T~~~yKQIII 498 (520)
T COG3634 474 RGETNVPGVFAAGDCTTVPYKQIII 498 (520)
T ss_pred CCCcCCCceeecCcccCCccceEEE
Confidence 3399999999988877653
No 54
>PRK12831 putative oxidoreductase; Provisional
Probab=99.95 E-value=1.7e-27 Score=219.64 Aligned_cols=236 Identities=22% Similarity=0.289 Sum_probs=160.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|+++|++|+++|+.+.+||.+.+. ++
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip 184 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG-----------------------------------IP 184 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence 5789999999999999999999999999999988889888651 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.++. .++..+..+.+++++++ +++++.+.. .+...+.. ..+.||.||+|
T Consensus 185 ~~~l~~---------------~~~~~~~~~~~~~~gv~--i~~~~~v~~---------~v~~~~~~---~~~~~d~viiA 235 (464)
T PRK12831 185 EFRLPK---------------ETVVKKEIENIKKLGVK--IETNVVVGK---------TVTIDELL---EEEGFDAVFIG 235 (464)
T ss_pred CccCCc---------------cHHHHHHHHHHHHcCCE--EEcCCEECC---------cCCHHHHH---hccCCCEEEEe
Confidence 111111 33556666777788888 888775521 12222211 14579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccC-------------CCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY-------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~-------------~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
||+ ..|+.++++|.+.. .++....+ .+.....+++|+|||+|.+|+|+|..+.+.|.+|++++|
T Consensus 236 tGa-~~~~~l~ipG~~~~--gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r 312 (464)
T PRK12831 236 SGA-GLPKFMGIPGENLN--GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYR 312 (464)
T ss_pred CCC-CCCCCCCCCCcCCc--CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEee
Confidence 994 26888888886531 12221111 111234689999999999999999999999999999998
Q ss_pred cCCcc------ccccCCCCC-CeEEecceeEEec--CCc---EEEc------------------cC--cEEecCEEEEcc
Q 018550 229 SVADE------THEKQPGYD-NMWLHSMVERANE--DGT---VVFR------------------NG--RVVSADVIMHCT 276 (354)
Q Consensus 229 ~~~~~------~~~~l~~~~-~~~~~~~v~~v~~--~~~---v~~~------------------~g--~~~~~D~vi~a~ 276 (354)
++..+ .+..+.+.+ ++++...+.++.. ++. |.+. +| .++++|+||+|+
T Consensus 313 ~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~Ai 392 (464)
T PRK12831 313 RSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSL 392 (464)
T ss_pred cCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECC
Confidence 76311 112233344 7888888888763 332 2221 22 268999999999
Q ss_pred cCCCccCcccccCc-hhh-----------------hhceeeeecccchh
Q 018550 277 GLTGTSTTTLFLKP-MAL-----------------LLWMTIVLGHCTST 307 (354)
Q Consensus 277 G~~~~~p~~~~l~~-~~~-----------------~~~~i~a~GD~~~~ 307 (354)
|+. |++.++.. .+. ...+|||+|||...
T Consensus 393 G~~---p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g 438 (464)
T PRK12831 393 GTS---PNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTG 438 (464)
T ss_pred CCC---CChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCC
Confidence 999 66655432 111 12359999999874
No 55
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.95 E-value=1e-27 Score=219.78 Aligned_cols=245 Identities=17% Similarity=0.259 Sum_probs=160.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|||||||+||+.+|..|.+.+.+|+|||+++.+- + ..+ .+....+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~----~-----------------------~~~---l~~~~~g-- 57 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML----F-----------------------TPL---LPQTTTG-- 57 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc----h-----------------------hhh---HHHhccc--
Confidence 4789999999999999999987789999999875331 0 000 0000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC----CceEEEEeCE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD----DVVEEETFDA 157 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~~~~~d~ 157 (354)
....+++...++..+...+++ + ...+|++|+.++ +.+.+...+.. ....++.||+
T Consensus 58 -----------------~~~~~~~~~~~~~~~~~~~~~--~-i~~~V~~Id~~~-~~v~~~~~~~~~~~~~~g~~i~yD~ 116 (424)
T PTZ00318 58 -----------------TLEFRSICEPVRPALAKLPNR--Y-LRAVVYDVDFEE-KRVKCGVVSKSNNANVNTFSVPYDK 116 (424)
T ss_pred -----------------CCChHHhHHHHHHHhccCCeE--E-EEEEEEEEEcCC-CEEEEecccccccccCCceEecCCE
Confidence 000144444455555555665 4 458999998765 55555321110 1124799999
Q ss_pred EEEeeCCCCCcccCCCCCCCCC--Ccceeec-ccC----------C---C--C-CCCCCCeEEEEccCCCHHHHHHHHhc
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSW--PGKQMHS-HNY----------R---I--P-NPFQDQVVILIGHYASGLDIKRDLAG 218 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~--~~~~~~~-~~~----------~---~--~-~~~~~~~v~ViG~G~~g~e~a~~l~~ 218 (354)
||+||| +.+..+.+||..+. ..+.+.. ... . . . .....++++|||+|++|+|+|..|++
T Consensus 117 LViAtG--s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~ 194 (424)
T PTZ00318 117 LVVAHG--ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELAD 194 (424)
T ss_pred EEECCC--cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHH
Confidence 999999 88888888887542 1110100 000 0 0 0 01123589999999999999999975
Q ss_pred --------------cCCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEE
Q 018550 219 --------------FAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIM 273 (354)
Q Consensus 219 --------------~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi 273 (354)
.+.+|+++++.+. +...+.|++.+ +++.++.|+++.++. |++++|+++++|++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~-v~~~~g~~i~~d~vi 273 (424)
T PTZ00318 195 FFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDKE-VVLKDGEVIPTGLVV 273 (424)
T ss_pred HHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCCE-EEECCCCEEEccEEE
Confidence 3688999998763 22334455555 889999999998776 889999999999999
Q ss_pred EcccCCCccCcccccCchhh-----------------hhceeeeecccch
Q 018550 274 HCTGLTGTSTTTLFLKPMAL-----------------LLWMTIVLGHCTS 306 (354)
Q Consensus 274 ~a~G~~~~~p~~~~l~~~~~-----------------~~~~i~a~GD~~~ 306 (354)
|++|.+++ + ++..++. ...+|||+|||+.
T Consensus 274 ~~~G~~~~-~---~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~ 319 (424)
T PTZ00318 274 WSTGVGPG-P---LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAA 319 (424)
T ss_pred EccCCCCc-c---hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEecccc
Confidence 99999943 2 2221111 1245999999996
No 56
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.95 E-value=6.8e-27 Score=215.38 Aligned_cols=232 Identities=24% Similarity=0.360 Sum_probs=160.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-----------------------------------ip 177 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG-----------------------------------IP 177 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec-----------------------------------CC
Confidence 4789999999999999999999999999999988888877651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. + .++.....+.+.+.+++ ++.++.+. ..+++.+. ...||+||+|
T Consensus 178 ~~~~--------------~--~~~~~~~~~~l~~~gv~--~~~~~~v~---------~~v~~~~~-----~~~yd~viiA 225 (449)
T TIGR01316 178 EFRL--------------P--KEIVVTEIKTLKKLGVT--FRMNFLVG---------KTATLEEL-----FSQYDAVFIG 225 (449)
T ss_pred CccC--------------C--HHHHHHHHHHHHhCCcE--EEeCCccC---------CcCCHHHH-----HhhCCEEEEe
Confidence 1100 0 45555555666777887 77766441 12333222 3468999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC--------------CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~--------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~ 227 (354)
||+ +.|+.|.++|.+.. .++....+. ......+++++|||+|.+|+|+|..+.+.|++|++++
T Consensus 226 tGa-~~p~~~~ipG~~~~--gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~ 302 (449)
T TIGR01316 226 TGA-GLPKLMNIPGEELC--GVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLY 302 (449)
T ss_pred CCC-CCCCcCCCCCCCCC--CcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 994 26888888886531 122211110 1112367999999999999999999999999999999
Q ss_pred ecCCc------cccccCCCCC-CeEEecceeEEecC--Cc---EEEc---------cC-----------cEEecCEEEEc
Q 018550 228 RSVAD------ETHEKQPGYD-NMWLHSMVERANED--GT---VVFR---------NG-----------RVVSADVIMHC 275 (354)
Q Consensus 228 r~~~~------~~~~~l~~~~-~~~~~~~v~~v~~~--~~---v~~~---------~g-----------~~~~~D~vi~a 275 (354)
+++.. ..++.+.+.+ ++++++.+.++..+ ++ |++. +| .++++|.||+|
T Consensus 303 ~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~A 382 (449)
T TIGR01316 303 RRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVA 382 (449)
T ss_pred ecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEEC
Confidence 97641 2223444555 88888888888642 32 3332 22 36899999999
Q ss_pred ccCCCccCcccccCchhhh----------------hceeeeecccch
Q 018550 276 TGLTGTSTTTLFLKPMALL----------------LWMTIVLGHCTS 306 (354)
Q Consensus 276 ~G~~~~~p~~~~l~~~~~~----------------~~~i~a~GD~~~ 306 (354)
+|+. |++.++...+.. ..+|||+||++.
T Consensus 383 iG~~---p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~ 426 (449)
T TIGR01316 383 IGNG---SNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIIL 426 (449)
T ss_pred CCCC---CCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCC
Confidence 9999 666665533221 235999999985
No 57
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.95 E-value=1.6e-26 Score=223.99 Aligned_cols=247 Identities=22% Similarity=0.270 Sum_probs=164.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~-----------------------------------IP 583 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI-----------------------------------IP 583 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee-----------------------------------cc
Confidence 4789999999999999999999999999999998898887651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. | .++..+..+.+...|++ +++++.+ .+..+ +. ....||+||+|
T Consensus 584 ~~Rl--------------p--~evL~~die~l~~~GVe--~~~gt~V-di~le----------~L----~~~gYDaVILA 630 (1019)
T PRK09853 584 QFRI--------------P--AELIQHDIEFVKAHGVK--FEFGCSP-DLTVE----------QL----KNEGYDYVVVA 630 (1019)
T ss_pred cccc--------------c--HHHHHHHHHHHHHcCCE--EEeCcee-EEEhh----------hh----eeccCCEEEEC
Confidence 1111 0 34455555666777888 8888776 22221 11 24569999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC------CCCCCCCCeEEEEccCCCHHHHHHHHhcc-C-CEEEEEEecCC--
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR------IPNPFQDQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVA-- 231 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g-~~v~~~~r~~~-- 231 (354)
||++ .++.+.++|... .++....+. ......+++|+|||||.+|+|+|..+.+. | ++|+++.|++.
T Consensus 631 TGA~-~~~~l~IpG~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~ 706 (1019)
T PRK09853 631 IGAD-KNGGLKLEGGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE 706 (1019)
T ss_pred cCCC-CCCCCCCCCccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc
Confidence 9953 345556776542 122221111 11223589999999999999999998887 4 48999999763
Q ss_pred ----ccccccC-CCCCCeEEecceeEEecCCcEE-------------------EccCcEEecCEEEEcccCCCccCcccc
Q 018550 232 ----DETHEKQ-PGYDNMWLHSMVERANEDGTVV-------------------FRNGRVVSADVIMHCTGLTGTSTTTLF 287 (354)
Q Consensus 232 ----~~~~~~l-~~~~~~~~~~~v~~v~~~~~v~-------------------~~~g~~~~~D~vi~a~G~~~~~p~~~~ 287 (354)
++.+... ++..+++....+.++..++.+. ..++.++++|+||+|+|.. |++++
T Consensus 707 MPA~~eEle~AleeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~---Pntel 783 (1019)
T PRK09853 707 MPAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ---VDTEL 783 (1019)
T ss_pred ccccHHHHHHHHHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc---CChhH
Confidence 1112222 2333777777777775433221 1223579999999999999 77777
Q ss_pred cCchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 288 LKPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 288 l~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
+...+.. ..+|||+||++.. +..++..+|.++.+..
T Consensus 784 le~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred HHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 6543321 2359999999852 3556666777775543
No 58
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-26 Score=192.96 Aligned_cols=274 Identities=20% Similarity=0.306 Sum_probs=183.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC--------CCccceeecCCCCCCCCCCCCCCCCcccccccccchhcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~--------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
.+|++|||||.+|++||++++..|.+|.++|-= ..+||+|.+ .||+|.+.|-...+.-+-.++.
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvN--------VGCIPKKLMHQAallG~al~da 90 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVN--------VGCIPKKLMHQAALLGEALHDA 90 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeee--------cccccHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999851 224677776 6999987665444332222222
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-----CcEEEEEeecCC
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-----NKWKVKSRKKDD 148 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-----~~~~v~~~~g~~ 148 (354)
. .+.|... ....-++|..+.+.+++.+...+.--++.++. ..+...+. +.+.+...+..+
T Consensus 91 ~-------kyGW~~~------e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre--KkV~Y~NsygeFv~~h~I~at~~~g 155 (503)
T KOG4716|consen 91 R-------KYGWNVD------EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE--KKVEYINSYGEFVDPHKIKATNKKG 155 (503)
T ss_pred H-------hhCCCCc------cccccccHHHHHHHHHHHhhhccceEEEEecc--ceeeeeecceeecccceEEEecCCC
Confidence 2 2333321 22445678999999999998876542233322 22222211 334444444334
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
++..+.++.+++||| .+|+.|++||..++ .+.+.+.... .+.|-+-+|||+|++|+|+|..|+..|..|+++.|
T Consensus 156 k~~~~ta~~fvIatG--~RPrYp~IpG~~Ey---~ITSDDlFsl-~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVR 229 (503)
T KOG4716|consen 156 KERFLTAENFVIATG--LRPRYPDIPGAKEY---GITSDDLFSL-PYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVR 229 (503)
T ss_pred ceEEeecceEEEEec--CCCCCCCCCCceee---eecccccccc-cCCCCceEEEccceeeeehhhhHhhcCCCcEEEEE
Confidence 567899999999999 99999999998773 3555444433 33455678999999999999999999999999999
Q ss_pred cCC----ccc-----cccCCCCC-CeEEecceeEEe--cCCc--EEEcc---C--cEEecCEEEEcccCCCccCcccccC
Q 018550 229 SVA----DET-----HEKQPGYD-NMWLHSMVERAN--EDGT--VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLK 289 (354)
Q Consensus 229 ~~~----~~~-----~~~l~~~~-~~~~~~~v~~v~--~~~~--v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~ 289 (354)
+-. ++. .+.|++.+ .++.++..+.++ .+++ |...+ + .+-.+|+|+||.|+. ++++-+.
T Consensus 230 SI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~---~~~~~l~ 306 (503)
T KOG4716|consen 230 SILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRK---ALTDDLN 306 (503)
T ss_pred EeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccc---cchhhcC
Confidence 875 332 33345666 777776666666 3343 33222 2 234599999999999 5554432
Q ss_pred --chhhh-----------------hceeeeecccchh
Q 018550 290 --PMALL-----------------LWMTIVLGHCTST 307 (354)
Q Consensus 290 --~~~~~-----------------~~~i~a~GD~~~~ 307 (354)
..+.. ...|||+||+...
T Consensus 307 L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~ 343 (503)
T KOG4716|consen 307 LDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILED 343 (503)
T ss_pred CCccceeecccCCccccChHHhcCCCceEEecceecC
Confidence 22221 1229999999984
No 59
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.94 E-value=1.8e-25 Score=219.86 Aligned_cols=234 Identities=18% Similarity=0.238 Sum_probs=159.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||++||..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG-----------------------------------IP 350 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG-----------------------------------IP 350 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc-----------------------------------CC
Confidence 4799999999999999999999999999999999999998761 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
++.. ..++.+...+.+..+|++ ++.++.+- ..++..+. ....||+|++|
T Consensus 351 ~~rl----------------p~~vi~~~i~~l~~~Gv~--f~~n~~vG---------~dit~~~l----~~~~yDAV~LA 399 (944)
T PRK12779 351 EFRL----------------PNQLIDDVVEKIKLLGGR--FVKNFVVG---------KTATLEDL----KAAGFWKIFVG 399 (944)
T ss_pred CCcC----------------hHHHHHHHHHHHHhhcCe--EEEeEEec---------cEEeHHHh----ccccCCEEEEe
Confidence 1111 156677777777888988 88776541 12344332 14579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC---------------CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR---------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~---------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~ 226 (354)
||+ ..|+.+++||.+.. .++...++. ......+++|+|||||.+|+|+|..+.+.|++|+++
T Consensus 400 tGA-~~pr~l~IpG~dl~--GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv 476 (944)
T PRK12779 400 TGA-GLPTFMNVPGEHLL--GVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIV 476 (944)
T ss_pred CCC-CCCCcCCCCCCcCc--CcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 995 36888889886531 111111110 011236799999999999999999999999999999
Q ss_pred EecCCc------cccccC-CCCCCeEEecceeEEecC--C-cE---EE---------c--------cC--cEEecCEEEE
Q 018550 227 SRSVAD------ETHEKQ-PGYDNMWLHSMVERANED--G-TV---VF---------R--------NG--RVVSADVIMH 274 (354)
Q Consensus 227 ~r~~~~------~~~~~l-~~~~~~~~~~~v~~v~~~--~-~v---~~---------~--------~g--~~~~~D~vi~ 274 (354)
+|++.. ..+... ++..+++....++++..+ + .| .+ . +| .++++|+||+
T Consensus 477 ~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~ 556 (944)
T PRK12779 477 YRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM 556 (944)
T ss_pred EecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEE
Confidence 987631 111112 233377777777777543 1 12 11 1 22 3689999999
Q ss_pred cccCCCccCcccccCc---h-----h----------hhhceeeeecccchh
Q 018550 275 CTGLTGTSTTTLFLKP---M-----A----------LLLWMTIVLGHCTST 307 (354)
Q Consensus 275 a~G~~~~~p~~~~l~~---~-----~----------~~~~~i~a~GD~~~~ 307 (354)
|+|+. |+..+... . + ....+|||+|||+..
T Consensus 557 AiG~~---p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G 604 (944)
T PRK12779 557 ALGNT---ANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARG 604 (944)
T ss_pred cCCcC---CChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCC
Confidence 99999 44432211 0 0 112459999999974
No 60
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.94 E-value=6.4e-26 Score=210.06 Aligned_cols=233 Identities=23% Similarity=0.308 Sum_probs=159.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+.+. ++
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g-----------------------------------ip 184 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG-----------------------------------IP 184 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc-----------------------------------CC
Confidence 4789999999999999999999999999999988888776541 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+. . ..++..+..+.+.+++++ ++.++.+.. .++..+. .+.||+||+|
T Consensus 185 ~~~--~--------------~~~~~~~~~~~l~~~gv~--~~~~~~v~~---------~v~~~~~-----~~~~d~vvlA 232 (457)
T PRK11749 185 EFR--L--------------PKDIVDREVERLLKLGVE--IRTNTEVGR---------DITLDEL-----RAGYDAVFIG 232 (457)
T ss_pred Ccc--C--------------CHHHHHHHHHHHHHcCCE--EEeCCEECC---------ccCHHHH-----HhhCCEEEEc
Confidence 010 0 156667777777778888 777776521 1122221 3689999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC--------CCCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEEEecCC-
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------IPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVA- 231 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~r~~~- 231 (354)
||++ .++.+.++|.+.. .+++...+. ......+++|+|||+|.+|+|+|..+.+.|. +|+++++++.
T Consensus 233 tGa~-~~~~~~i~G~~~~--gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~ 309 (457)
T PRK11749 233 TGAG-LPRFLGIPGENLG--GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE 309 (457)
T ss_pred cCCC-CCCCCCCCCccCC--CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc
Confidence 9952 4666777776531 122211110 0112368999999999999999999999987 8999998653
Q ss_pred -----ccccccCCCCC-CeEEecceeEEecCCc----EEEc-------------------cCcEEecCEEEEcccCCCcc
Q 018550 232 -----DETHEKQPGYD-NMWLHSMVERANEDGT----VVFR-------------------NGRVVSADVIMHCTGLTGTS 282 (354)
Q Consensus 232 -----~~~~~~l~~~~-~~~~~~~v~~v~~~~~----v~~~-------------------~g~~~~~D~vi~a~G~~~~~ 282 (354)
....+.+.+.+ ++++++.+.++..++. |++. ++.++++|.||+|+|++
T Consensus 310 ~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~--- 386 (457)
T PRK11749 310 EMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT--- 386 (457)
T ss_pred cCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC---
Confidence 12233344445 8899999998875431 4432 22479999999999999
Q ss_pred CcccccCc---h---------------hhhhceeeeecccchh
Q 018550 283 TTTLFLKP---M---------------ALLLWMTIVLGHCTST 307 (354)
Q Consensus 283 p~~~~l~~---~---------------~~~~~~i~a~GD~~~~ 307 (354)
|+..++.. . .....+|||+||+...
T Consensus 387 p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~ 429 (457)
T PRK11749 387 PNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG 429 (457)
T ss_pred CCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC
Confidence 66554321 1 1112459999999863
No 61
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.93 E-value=6.6e-25 Score=196.70 Aligned_cols=244 Identities=22% Similarity=0.259 Sum_probs=157.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+++|..|++.|.+|+++|+.+.+|+.+.....
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~----------------------------------- 62 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIP----------------------------------- 62 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCc-----------------------------------
Confidence 468999999999999999999999999999998888877654100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEE---eCCCcEEEEEeecCCceEEEEeCEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL---VESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~---~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
... + ....+.....++ .+.+++ ++.++.+..+.. ...+.+.......+ ...+.||+|
T Consensus 63 ~~~--------------~-~~~~~~~~~~~l-~~~~i~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~l 122 (352)
T PRK12770 63 EFR--------------I-PIERVREGVKEL-EEAGVV--FHTRTKVCCGEPLHEEEGDEFVERIVSLE--ELVKKYDAV 122 (352)
T ss_pred ccc--------------c-CHHHHHHHHHHH-HhCCeE--EecCcEEeeccccccccccccccccCCHH--HHHhhCCEE
Confidence 000 0 013333344443 344777 788777765432 11122222111111 124789999
Q ss_pred EEeeCCCCCcccCCCCCCCCCCcceeecc-------c-------CCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCE-E
Q 018550 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSH-------N-------YRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-V 223 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~~~~~~~~~~-------~-------~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-v 223 (354)
|+|||++ .++.|+++|.+.. .++... . ........+++++|||+|.+|+|+|..|...|.+ |
T Consensus 123 viAtGs~-~~~~~~ipg~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~V 199 (352)
T PRK12770 123 LIATGTW-KSRKLGIPGEDLP--GVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKV 199 (352)
T ss_pred EEEeCCC-CCCcCCCCCcccc--CceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 9999941 4777888876531 111110 0 0011123478999999999999999999988876 9
Q ss_pred EEEEecCC------ccccccCCCCC-CeEEecceeEEecCCc---EEEc------------------c--CcEEecCEEE
Q 018550 224 HIASRSVA------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFR------------------N--GRVVSADVIM 273 (354)
Q Consensus 224 ~~~~r~~~------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~------------------~--g~~~~~D~vi 273 (354)
+++.+++. ....++|++.+ +++.++.+.++.+++. |.+. + +.++++|.+|
T Consensus 200 tvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi 279 (352)
T PRK12770 200 YLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVV 279 (352)
T ss_pred EEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEE
Confidence 99998653 12233455555 8888888888875443 2221 2 2578999999
Q ss_pred EcccCCCccCcccccCc-hhh----------------hhceeeeecccch
Q 018550 274 HCTGLTGTSTTTLFLKP-MAL----------------LLWMTIVLGHCTS 306 (354)
Q Consensus 274 ~a~G~~~~~p~~~~l~~-~~~----------------~~~~i~a~GD~~~ 306 (354)
+++|++ |++.+..+ .+. ...+||++|||..
T Consensus 280 ~a~G~~---p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~ 326 (352)
T PRK12770 280 FAIGEI---PTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVT 326 (352)
T ss_pred ECcccC---CCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEccccc
Confidence 999999 66555433 111 1245999999987
No 62
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.93 E-value=4.1e-25 Score=215.82 Aligned_cols=234 Identities=22% Similarity=0.329 Sum_probs=157.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip 475 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG-----------------------------------IP 475 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence 4789999999999999999999999999999988888887651 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
++.+ | .++.+...+.+.+++++ ++.++.+. . .++..+. ....||+||+|
T Consensus 476 ~~rl--------------p--~~~~~~~~~~l~~~gv~--~~~~~~v~-------~--~v~~~~l----~~~~ydavvlA 524 (752)
T PRK12778 476 EFRL--------------P--KKIVDVEIENLKKLGVK--FETDVIVG-------K--TITIEEL----EEEGFKGIFIA 524 (752)
T ss_pred CCCC--------------C--HHHHHHHHHHHHHCCCE--EECCCEEC-------C--cCCHHHH----hhcCCCEEEEe
Confidence 1111 1 34555555666778888 88776541 1 1222222 24579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccC----------C---CCCCCCCCeEEEEccCCCHHHHHHHHhccCCE-EEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY----------R---IPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-VHIAS 227 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~----------~---~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-v~~~~ 227 (354)
||+ ..++.+.++|.+.. .+++...+ . ......+++|+|||+|.+|+|+|..+.+.|++ |++++
T Consensus 525 tGa-~~~~~l~ipG~~~~--gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~ 601 (752)
T PRK12778 525 SGA-GLPNFMNIPGENSN--GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVY 601 (752)
T ss_pred CCC-CCCCCCCCCCCCCC--CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEee
Confidence 995 25888888886531 11221111 0 11224679999999999999999999999986 99999
Q ss_pred ecCCc------cccccCCCCC-CeEEecceeEEecC--Cc---EEEc---------cC-----------cEEecCEEEEc
Q 018550 228 RSVAD------ETHEKQPGYD-NMWLHSMVERANED--GT---VVFR---------NG-----------RVVSADVIMHC 275 (354)
Q Consensus 228 r~~~~------~~~~~l~~~~-~~~~~~~v~~v~~~--~~---v~~~---------~g-----------~~~~~D~vi~a 275 (354)
+++.. ..+..+.+.+ ++++.+.+.++..+ +. |.+. +| .++++|+||+|
T Consensus 602 r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A 681 (752)
T PRK12778 602 RRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVS 681 (752)
T ss_pred ecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEEC
Confidence 87631 1112333444 77878877777532 32 2221 12 35899999999
Q ss_pred ccCCCccCcccccCch-h----------------hhhceeeeecccchh
Q 018550 276 TGLTGTSTTTLFLKPM-A----------------LLLWMTIVLGHCTST 307 (354)
Q Consensus 276 ~G~~~~~p~~~~l~~~-~----------------~~~~~i~a~GD~~~~ 307 (354)
+|+. |+..++... + ....+|||+||+...
T Consensus 682 ~G~~---p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g 727 (752)
T PRK12778 682 VGVS---PNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRG 727 (752)
T ss_pred cCCC---CCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCC
Confidence 9999 555443221 1 112459999999863
No 63
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.93 E-value=7e-25 Score=213.66 Aligned_cols=245 Identities=20% Similarity=0.276 Sum_probs=157.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||++||..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-----------------------------------IP 581 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-----------------------------------IP 581 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-----------------------------------cc
Confidence 4789999999999999999999999999999998899887651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. | .+..++..+.+..+|++ ++++... . ++..+. ....||+||+|
T Consensus 582 ~~rl--------------p--~e~l~~~ie~l~~~GVe--~~~g~~~--------d---~~ve~l----~~~gYDaVIIA 628 (1012)
T TIGR03315 582 EFRI--------------S--AESIQKDIELVKFHGVE--FKYGCSP--------D---LTVAEL----KNQGYKYVILA 628 (1012)
T ss_pred ccCC--------------C--HHHHHHHHHHHHhcCcE--EEEeccc--------c---eEhhhh----hcccccEEEEC
Confidence 1110 0 34444555566667877 7665321 0 111111 14568999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccC----CC--CCCCCCCeEEEEccCCCHHHHHHHHhcc-C-CEEEEEEecCC--
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY----RI--PNPFQDQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVA-- 231 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~----~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g-~~v~~~~r~~~-- 231 (354)
||++ .++.+.++|... ..+....+ .. .....+++|+|||||.+|+|+|..+.+. | .+|++++|+..
T Consensus 629 TGA~-~~~~l~I~G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~ 704 (1012)
T TIGR03315 629 IGAW-KHGPLRLEGGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRY 704 (1012)
T ss_pred CCCC-CCCCCCcCCCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 9953 344555666432 12221111 11 1224689999999999999999998876 6 47999998763
Q ss_pred ----ccccc-cCCCCCCeEEecceeEEecCCcEE-----------------EccC--cEEecCEEEEcccCCCccCcccc
Q 018550 232 ----DETHE-KQPGYDNMWLHSMVERANEDGTVV-----------------FRNG--RVVSADVIMHCTGLTGTSTTTLF 287 (354)
Q Consensus 232 ----~~~~~-~l~~~~~~~~~~~v~~v~~~~~v~-----------------~~~g--~~~~~D~vi~a~G~~~~~p~~~~ 287 (354)
.+.+. .+++..+++....+.++.. +.++ +.+| .++++|+||+|+|+. |++++
T Consensus 705 Mpa~~eEl~~aleeGVe~~~~~~p~~I~~-g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~---Pnt~l 780 (1012)
T TIGR03315 705 MPASREELEEALEDGVDFKELLSPESFED-GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ---VDTDL 780 (1012)
T ss_pred cccCHHHHHHHHHcCCEEEeCCceEEEEC-CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc---CChHH
Confidence 11111 1233336666666666652 2221 1233 368999999999999 77766
Q ss_pred cCchhhh-----------------hceeeeecccch------hhHHHHHHHhhhccCC
Q 018550 288 LKPMALL-----------------LWMTIVLGHCTS------TFFRQSWHQAFHLLGY 322 (354)
Q Consensus 288 l~~~~~~-----------------~~~i~a~GD~~~------~~~~~~~~~~~~~~~~ 322 (354)
++..+.. ..+|||+|||.. .+..++..+|.++.+.
T Consensus 781 le~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred HHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 6433211 235999999984 2356666677777554
No 64
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.93 E-value=2.2e-26 Score=202.98 Aligned_cols=264 Identities=21% Similarity=0.239 Sum_probs=160.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.+|+++||.||+++++|..|.+.+ .++.+||+.+. ..|+.. .+.|...+..+.+.+......|...+.|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~--f~Wh~g--------mll~~~~~q~~fl~Dlvt~~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS--FSWHPG--------MLLPGARMQVSFLKDLVTLRDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGG--------G--SS-B-SS-TTSSSSTTT-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC--CCcCCc--------cCCCCCccccccccccCcCcCCCCcccH
Confidence 479999999999999999999887 89999998664 345442 2223333334444444444555555544
Q ss_pred cCCCCCccCCCCCC-CCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC---cEEEEEeecCCceEEEEeC
Q 018550 81 QAYPFVARNYEGSV-DLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN---KWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~---~~~v~~~~g~~~~~~~~~d 156 (354)
.+|-....++..+. ....+|++.++.+|+++.+++++.. ++++.+|++|....++ .|.|.+.+.++....+.++
T Consensus 72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar 149 (341)
T PF13434_consen 72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR 149 (341)
T ss_dssp HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES
T ss_pred HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC
Confidence 43332222211111 2345688999999999999999876 8999999999987633 4899987655556799999
Q ss_pred EEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC--CCCCCCeEEEEccCCCHHHHHHHHhccCC--EEEEEEecCC-
Q 018550 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAK--EVHIASRSVA- 231 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~v~~~~r~~~- 231 (354)
.||+|+| ..|.+|...........++|+.++... ....+++|+|||||.+|+|++..|.+.+. +|++++|++.
T Consensus 150 ~vVla~G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 150 NVVLATG--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp EEEE------EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred eEEECcC--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 9999999 889988744322122477888766432 24578999999999999999999998864 8999999884
Q ss_pred ---------------------------------c------------ccc----c-----cCCCC--CCeEEecceeEEec
Q 018550 232 ---------------------------------D------------ETH----E-----KQPGY--DNMWLHSMVERANE 255 (354)
Q Consensus 232 ---------------------------------~------------~~~----~-----~l~~~--~~~~~~~~v~~v~~ 255 (354)
. +.+ + ++.+. ..++.++.|+.++.
T Consensus 228 ~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~ 307 (341)
T PF13434_consen 228 FPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQ 307 (341)
T ss_dssp EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEE
T ss_pred CCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEE
Confidence 0 000 0 11111 25677889999874
Q ss_pred CC--c--EEEcc---C--cEEecCEEEEcccCC
Q 018550 256 DG--T--VVFRN---G--RVVSADVIMHCTGLT 279 (354)
Q Consensus 256 ~~--~--v~~~~---g--~~~~~D~vi~a~G~~ 279 (354)
++ . +.+.+ + .++.+|.||+|||++
T Consensus 308 ~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 308 DGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp ES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred CCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 33 3 55554 2 567899999999985
No 65
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.92 E-value=8.5e-24 Score=211.04 Aligned_cols=247 Identities=17% Similarity=0.156 Sum_probs=168.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||++||..|++.|.+|+|+|+++.+||.+.....
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~----------------------------------- 207 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE----------------------------------- 207 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc-----------------------------------
Confidence 368999999999999999999999999999999889888764210
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEE-e-------ecC--Cce
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKS-R-------KKD--DVV 150 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~-~-------~g~--~~~ 150 (354)
..+.. +..++...+.+.+..+ +++ +..+++|..+.... ....+.. . .+. +..
T Consensus 208 ~~~g~--------------~~~~~~~~~~~~l~~~~~v~--v~~~t~V~~i~~~~-~v~~v~~~~~~~~~~~~~~~~~~~ 270 (985)
T TIGR01372 208 TIDGK--------------PAADWAAATVAELTAMPEVT--LLPRTTAFGYYDHN-TVGALERVTDHLDAPPKGVPRERL 270 (985)
T ss_pred ccCCc--------------cHHHHHHHHHHHHhcCCCcE--EEcCCEEEEEecCC-eEEEEEEeeeccccccCCccccce
Confidence 00000 0134434444444444 466 78888888875321 1111110 0 000 112
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeec---ccCCC-CCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEE
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHS---HNYRI-PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHI 225 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~---~~~~~-~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~ 225 (354)
.++.++.||+||| +.++.|+++|.+. ++ ++.. ..+.. .....+++++|||+|++|+|+|..|++.|. .|++
T Consensus 271 ~~i~a~~VILATG--a~~r~~pipG~~~-pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~v 346 (985)
T TIGR01372 271 WRIRAKRVVLATG--AHERPLVFANNDR-PG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAI 346 (985)
T ss_pred EEEEcCEEEEcCC--CCCcCCCCCCCCC-CC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence 3689999999999 7888888888654 21 1111 11111 122357999999999999999999999994 5788
Q ss_pred EEecCC--ccccccCCCCC-CeEEecceeEEecCCc---EEEc----cCcEEecCEEEEcccCCCccCcccccCchhhh-
Q 018550 226 ASRSVA--DETHEKQPGYD-NMWLHSMVERANEDGT---VVFR----NGRVVSADVIMHCTGLTGTSTTTLFLKPMALL- 294 (354)
Q Consensus 226 ~~r~~~--~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~----~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~- 294 (354)
+.+.+. ....+++++.+ +++.++.++++.+++. |++. ++++++||.|+++.|+. ||++++...+..
T Consensus 347 v~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~---Pnt~L~~~lg~~~ 423 (985)
T TIGR01372 347 IDARADVSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWT---PVVHLFSQRGGKL 423 (985)
T ss_pred EccCcchhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcC---chhHHHHhcCCCe
Confidence 876553 33344555555 8899999999986653 4554 34789999999999999 888887654432
Q ss_pred --------------hceeeeecccchh
Q 018550 295 --------------LWMTIVLGHCTST 307 (354)
Q Consensus 295 --------------~~~i~a~GD~~~~ 307 (354)
..+||++||+...
T Consensus 424 ~~~~~~~~~~~~t~v~gVyaaGD~~g~ 450 (985)
T TIGR01372 424 AWDAAIAAFLPGDAVQGCILAGAANGL 450 (985)
T ss_pred eeccccCceecCCCCCCeEEeeccCCc
Confidence 2469999999874
No 66
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.92 E-value=2.9e-24 Score=205.93 Aligned_cols=232 Identities=22% Similarity=0.321 Sum_probs=154.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||+|+++|..|++.|++|++||+.+.+||.+.+. ++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g-----------------------------------ip 237 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG-----------------------------------IP 237 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec-----------------------------------CC
Confidence 3789999999999999999999999999999998899888651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. ..++.++..+.+.++|++ +++++.+ .++ ++..+. ...||.||+|
T Consensus 238 ~~~~----------------~~~~~~~~~~~l~~~Gv~--i~~~~~v-~~d--------v~~~~~-----~~~~DaVilA 285 (652)
T PRK12814 238 RFRL----------------PESVIDADIAPLRAMGAE--FRFNTVF-GRD--------ITLEEL-----QKEFDAVLLA 285 (652)
T ss_pred CCCC----------------CHHHHHHHHHHHHHcCCE--EEeCCcc-cCc--------cCHHHH-----HhhcCEEEEE
Confidence 1110 045556666667778887 7776644 111 111111 2359999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccC-----CCCCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEEEecCCc---
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY-----RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVAD--- 232 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~--- 232 (354)
||++ .++.+.++|.+.. + ++....+ .......+++|+|||+|.+|+|+|..+.+.|. +|+++++++..
T Consensus 286 tGa~-~~~~~~ipG~~~~-g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mp 362 (652)
T PRK12814 286 VGAQ-KASKMGIPGEELP-G-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMP 362 (652)
T ss_pred cCCC-CCCCCCCCCcCcC-C-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence 9942 2345677775431 1 1221111 11223468999999999999999999999985 69999987631
Q ss_pred ---ccccc-CCCCCCeEEecceeEEecC-CcE-----EEc---------------cC--cEEecCEEEEcccCCCccCcc
Q 018550 233 ---ETHEK-QPGYDNMWLHSMVERANED-GTV-----VFR---------------NG--RVVSADVIMHCTGLTGTSTTT 285 (354)
Q Consensus 233 ---~~~~~-l~~~~~~~~~~~v~~v~~~-~~v-----~~~---------------~g--~~~~~D~vi~a~G~~~~~p~~ 285 (354)
..+.+ +++..++++...+.++..+ +.+ .+. +| .++++|.||+|+|+. |++
T Consensus 363 a~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~---p~~ 439 (652)
T PRK12814 363 ANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ---VDP 439 (652)
T ss_pred CCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc---CCc
Confidence 11122 2333488888888777632 221 111 22 258999999999999 776
Q ss_pred cccCchhhh-----------------hceeeeecccch
Q 018550 286 LFLKPMALL-----------------LWMTIVLGHCTS 306 (354)
Q Consensus 286 ~~l~~~~~~-----------------~~~i~a~GD~~~ 306 (354)
+++...+.. ..+|||+||+..
T Consensus 440 ~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~ 477 (652)
T PRK12814 440 PIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVT 477 (652)
T ss_pred ccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCC
Confidence 666433211 235999999985
No 67
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.92 E-value=1.1e-24 Score=196.82 Aligned_cols=238 Identities=18% Similarity=0.216 Sum_probs=156.2
Q ss_pred eEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+|||||||+||+.+|..|+++ +.+|+|||+++.. .+ ... .+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~~-----------------------~~~---~~------ 44 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PY-----------------------SGM---LP------ 44 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----cc-----------------------cch---hh------
Confidence 599999999999999999754 6899999987532 11 000 00
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.+.. ......++...+.+.+++.+++ +.. .+|++|+.++ .+|.+.++. ++.||+||+
T Consensus 45 -~~~~------------g~~~~~~~~~~~~~~~~~~gv~--~~~-~~v~~id~~~---~~V~~~~g~----~~~yD~Lvi 101 (364)
T TIGR03169 45 -GMIA------------GHYSLDEIRIDLRRLARQAGAR--FVI-AEATGIDPDR---RKVLLANRP----PLSYDVLSL 101 (364)
T ss_pred -HHHh------------eeCCHHHhcccHHHHHHhcCCE--EEE-EEEEEEeccc---CEEEECCCC----cccccEEEE
Confidence 0000 0001144555566677777887 655 6899998754 367776664 789999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceee---ccc----CCC--CCCCCCCeEEEEccCCCHHHHHHHHhcc----C--CEEEE
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMH---SHN----YRI--PNPFQDQVVILIGHYASGLDIKRDLAGF----A--KEVHI 225 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~---~~~----~~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~----g--~~v~~ 225 (354)
||| +.++.|.++|..+....... ... ... .....+++++|||+|++|+|+|..|++. + .+|++
T Consensus 102 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~l 179 (364)
T TIGR03169 102 DVG--STTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTL 179 (364)
T ss_pred ccC--CCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999 88999998885431100000 000 000 0012357999999999999999999752 3 47999
Q ss_pred EEecCC---------ccccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCc-----
Q 018550 226 ASRSVA---------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKP----- 290 (354)
Q Consensus 226 ~~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~----- 290 (354)
+.+... +...+.+++.+ +++.++.++++..+. +++.+|.++++|.+++|+|.+ |+..+...
T Consensus 180 i~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-v~~~~g~~i~~D~vi~a~G~~---p~~~l~~~gl~~~ 255 (364)
T TIGR03169 180 IAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGA-LILADGRTLPADAILWATGAR---APPWLAESGLPLD 255 (364)
T ss_pred EeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCe-EEeCCCCEEecCEEEEccCCC---hhhHHHHcCCCcC
Confidence 943221 11222334444 888999999987654 888899999999999999999 54322110
Q ss_pred ----------hhh-hhceeeeecccch
Q 018550 291 ----------MAL-LLWMTIVLGHCTS 306 (354)
Q Consensus 291 ----------~~~-~~~~i~a~GD~~~ 306 (354)
... ...+|||+|||+.
T Consensus 256 ~~g~i~vd~~l~~~~~~~Iya~GD~~~ 282 (364)
T TIGR03169 256 EDGFLRVDPTLQSLSHPHVFAAGDCAV 282 (364)
T ss_pred CCCeEEECCccccCCCCCEEEeeeeee
Confidence 011 1345999999985
No 68
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.92 E-value=1e-23 Score=209.33 Aligned_cols=212 Identities=19% Similarity=0.321 Sum_probs=144.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g-----------------------------------ip 474 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG-----------------------------------IP 474 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc-----------------------------------CC
Confidence 4789999999999999999999999999999998888877651 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. ..++.+...+.+.++|++ +++++.+ . .. ++..+-. ....||+||+|
T Consensus 475 ~~rl----------------~~e~~~~~~~~l~~~Gv~--~~~~~~v-g------~~--~~~~~l~---~~~~yDaViIA 524 (1006)
T PRK12775 475 SFRL----------------PRDIIDREVQRLVDIGVK--IETNKVI-G------KT--FTVPQLM---NDKGFDAVFLG 524 (1006)
T ss_pred ccCC----------------CHHHHHHHHHHHHHCCCE--EEeCCcc-C------Cc--cCHHHHh---hccCCCEEEEe
Confidence 1110 156677777778888988 8887543 1 11 1211110 02468999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeeccc--------------CCCCCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHN--------------YRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA 226 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~--------------~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~ 226 (354)
||+ ..|+.+++||.+. ..+++... +.+.....+++|+|||||.+|+|+|..+.+.|. .|+++
T Consensus 525 TGa-~~pr~l~IpG~~l--~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv 601 (1006)
T PRK12775 525 VGA-GAPTFLGIPGEFA--GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCV 601 (1006)
T ss_pred cCC-CCCCCCCCCCcCC--CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 995 2578888988643 12222211 112223468999999999999999999999986 58899
Q ss_pred EecCCccc------cccCCCCC-CeEEecceeEEec--CCc---EEEc-----------------cC--cEEecCEEEEc
Q 018550 227 SRSVADET------HEKQPGYD-NMWLHSMVERANE--DGT---VVFR-----------------NG--RVVSADVIMHC 275 (354)
Q Consensus 227 ~r~~~~~~------~~~l~~~~-~~~~~~~v~~v~~--~~~---v~~~-----------------~g--~~~~~D~vi~a 275 (354)
+|+...+. ++.+++.+ ++++.+.+.++.. ++. |.+. +| .++++|.||+|
T Consensus 602 ~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~A 681 (1006)
T PRK12775 602 YRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYA 681 (1006)
T ss_pred eecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEEC
Confidence 88654211 22233444 8888888888753 333 2221 12 36899999999
Q ss_pred ccCCCc
Q 018550 276 TGLTGT 281 (354)
Q Consensus 276 ~G~~~~ 281 (354)
+|+.|+
T Consensus 682 iG~~p~ 687 (1006)
T PRK12775 682 LGTKAN 687 (1006)
T ss_pred CCcCCC
Confidence 999943
No 69
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.91 E-value=5.9e-24 Score=186.08 Aligned_cols=239 Identities=17% Similarity=0.283 Sum_probs=173.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.++++|||+|++|..|+..+.+.|. +++++-+...+ .+ +. -.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----py-----------------------dr---------~~ 117 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----PY-----------------------DR---------AR 117 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----cc-----------------------cc---------hh
Confidence 3689999999999999999999986 78888765322 11 00 00
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
++.+..... ..+.....++.+..+++ +++++.|+.++. ...+|.+.+|. .++|++++
T Consensus 118 Ls~~~~~~~--------------~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~---~~K~l~~~~Ge----~~kys~Li 174 (478)
T KOG1336|consen 118 LSKFLLTVG--------------EGLAKRTPEFYKEKGIE--LILGTSVVKADL---ASKTLVLGNGE----TLKYSKLI 174 (478)
T ss_pred cccceeecc--------------ccccccChhhHhhcCce--EEEcceeEEeec---cccEEEeCCCc----eeecceEE
Confidence 001111000 33334445567788888 999999999998 44677887775 99999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--- 231 (354)
+||| +.++.|+++|.... .+....+..+. .......|+++|+|.+|+|+|..|...+.+||++.+.+.
T Consensus 175 lATG--s~~~~l~~pG~~~~--nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~ 250 (478)
T KOG1336|consen 175 IATG--SSAKTLDIPGVELK--NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP 250 (478)
T ss_pred Eeec--CccccCCCCCcccc--ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh
Confidence 9999 79999999997742 11111111111 122467799999999999999999999999999999874
Q ss_pred --------ccccccCCCCC-CeEEecceeEEecCC--c---EEEccCcEEecCEEEEcccCCCccCcccccCc-hhhhh-
Q 018550 232 --------DETHEKQPGYD-NMWLHSMVERANEDG--T---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKP-MALLL- 295 (354)
Q Consensus 232 --------~~~~~~l~~~~-~~~~~~~v~~v~~~~--~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~-~~~~~- 295 (354)
.....-+++++ +++.++.+.+++.+. + |.+.|++++++|+|++++|.+ ||+.+++. ..+..
T Consensus 251 ~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~---p~t~~~~~g~~~~~~ 327 (478)
T KOG1336|consen 251 RLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK---PNTSFLEKGILLDSK 327 (478)
T ss_pred hhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc---cccccccccceeccc
Confidence 11222235555 899999999998543 4 788999999999999999999 99999873 22221
Q ss_pred -------------ceeeeecccch
Q 018550 296 -------------WMTIVLGHCTS 306 (354)
Q Consensus 296 -------------~~i~a~GD~~~ 306 (354)
.+|||+||++.
T Consensus 328 G~i~V~~~f~t~~~~VyAiGDva~ 351 (478)
T KOG1336|consen 328 GGIKVDEFFQTSVPNVYAIGDVAT 351 (478)
T ss_pred CCEeehhceeeccCCcccccceee
Confidence 23999999998
No 70
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.91 E-value=2.1e-23 Score=193.58 Aligned_cols=233 Identities=21% Similarity=0.296 Sum_probs=153.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+++|..|++.|++|++||+.+.+||.+.+. ++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-----------------------------------ip 187 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG-----------------------------------IP 187 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec-----------------------------------CC
Confidence 3789999999999999999999999999999998888877641 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. + .++.....+.+.++|++ +++++.+.. . +...+ ....||.||+|
T Consensus 188 ~~~~--------------~--~~~~~~~~~~~~~~gv~--~~~~~~v~~-~--------~~~~~-----~~~~~d~vvlA 235 (471)
T PRK12810 188 DFKL--------------E--KEVIDRRIELMEAEGIE--FRTNVEVGK-D--------ITAEE-----LLAEYDAVFLG 235 (471)
T ss_pred cccC--------------C--HHHHHHHHHHHHhCCcE--EEeCCEECC-c--------CCHHH-----HHhhCCEEEEe
Confidence 1100 0 44555556667778888 888776521 1 00011 13579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccC-------------CCCCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY-------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIAS 227 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~-------------~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~ 227 (354)
||+ ..++.+.++|.+.. .+.....+ .......+++|+|||+|++|+|+|..+.+.|. +|+.+.
T Consensus 236 tGa-~~~~~l~ipG~~~~--gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~ 312 (471)
T PRK12810 236 TGA-YKPRDLGIPGRDLD--GVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD 312 (471)
T ss_pred cCC-CCCCcCCCCCccCC--CcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence 994 23677778876531 11111000 11123468999999999999999998888875 788666
Q ss_pred ecCC---cc-------------ccccCCCCC-CeEEecceeEEec-CCcE---EEc-----c-------C--cEEecCEE
Q 018550 228 RSVA---DE-------------THEKQPGYD-NMWLHSMVERANE-DGTV---VFR-----N-------G--RVVSADVI 272 (354)
Q Consensus 228 r~~~---~~-------------~~~~l~~~~-~~~~~~~v~~v~~-~~~v---~~~-----~-------g--~~~~~D~v 272 (354)
+... +. ....+.+.+ ++++...++++.. +++| .+. + + .++++|.|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~V 392 (471)
T PRK12810 313 IMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLV 392 (471)
T ss_pred ccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEE
Confidence 5442 11 122333444 8899999999874 4433 221 2 2 57899999
Q ss_pred EEcccCCCccCcc-cccCchhh-----------------hhceeeeecccchh
Q 018550 273 MHCTGLTGTSTTT-LFLKPMAL-----------------LLWMTIVLGHCTST 307 (354)
Q Consensus 273 i~a~G~~~~~p~~-~~l~~~~~-----------------~~~~i~a~GD~~~~ 307 (354)
|+|+|+. |+. .+++..+. ...+|||+||+...
T Consensus 393 I~A~G~~---p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g 442 (471)
T PRK12810 393 LLAMGFT---GPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRG 442 (471)
T ss_pred EECcCcC---CCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCC
Confidence 9999999 543 34433221 12459999999874
No 71
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.91 E-value=6.9e-23 Score=197.24 Aligned_cols=233 Identities=22% Similarity=0.312 Sum_probs=154.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||||+++|..|++.|++|++||+.+.+||.+.+. ++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g-----------------------------------ip 371 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG-----------------------------------IP 371 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec-----------------------------------CC
Confidence 4789999999999999999999999999999998899887651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. . .++.+...+.+.++|++ +++++.+.. + ++..+ ....||.|++|
T Consensus 372 ~~~l--~--------------~~~~~~~~~~~~~~Gv~--~~~~~~v~~------~---i~~~~-----~~~~~DavilA 419 (654)
T PRK12769 372 AFKL--D--------------KSLLARRREIFSAMGIE--FELNCEVGK------D---ISLES-----LLEDYDAVFVG 419 (654)
T ss_pred CccC--C--------------HHHHHHHHHHHHHCCeE--EECCCEeCC------c---CCHHH-----HHhcCCEEEEe
Confidence 1111 0 45566666777788888 888776521 0 11111 12479999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeec--------------ccCCCC--CCCCCCeEEEEccCCCHHHHHHHHhccCC-EEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHS--------------HNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAK-EVH 224 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~--------------~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~ 224 (354)
||++ .++.+.++|... .+ ++.. ....+. ....+++|+|||+|.+|+|+|..+.+.|. +|+
T Consensus 420 tGa~-~~~~l~i~g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt 496 (654)
T PRK12769 420 VGTY-RSMKAGLPNEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVT 496 (654)
T ss_pred CCCC-CCCCCCCCCCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence 9962 344566666543 11 1100 000000 12367899999999999999999888885 799
Q ss_pred EEEecCC------ccccccCCCCC-CeEEecceeEEec--CCc---EEEc---------cC-----------cEEecCEE
Q 018550 225 IASRSVA------DETHEKQPGYD-NMWLHSMVERANE--DGT---VVFR---------NG-----------RVVSADVI 272 (354)
Q Consensus 225 ~~~r~~~------~~~~~~l~~~~-~~~~~~~v~~v~~--~~~---v~~~---------~g-----------~~~~~D~v 272 (354)
++++++. +..++.+.+.+ ++++.+.++++.. +++ |++. +| .++++|+|
T Consensus 497 ~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~V 576 (654)
T PRK12769 497 CAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAV 576 (654)
T ss_pred EeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEE
Confidence 9998753 12233344444 8888888888852 333 2321 12 26899999
Q ss_pred EEcccCCCccCcc-cccCchh--------------------hhhceeeeecccchh
Q 018550 273 MHCTGLTGTSTTT-LFLKPMA--------------------LLLWMTIVLGHCTST 307 (354)
Q Consensus 273 i~a~G~~~~~p~~-~~l~~~~--------------------~~~~~i~a~GD~~~~ 307 (354)
|+|+|+. |+. .+++..+ ....+|||+||++..
T Consensus 577 i~AiG~~---p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g 629 (654)
T PRK12769 577 IMAFGFN---PHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRG 629 (654)
T ss_pred EECccCC---CCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCC
Confidence 9999999 542 2332211 122459999999874
No 72
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.90 E-value=1.3e-22 Score=187.74 Aligned_cols=233 Identities=22% Similarity=0.292 Sum_probs=154.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||+|+++|..|++.|++|+++|+.+.+||.+.+. ++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g-----------------------------------ip 185 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG-----------------------------------IP 185 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec-----------------------------------Cc
Confidence 4789999999999999999999999999999998898877651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. . .++.++..+.+.++|++ +++++++..- +...+ ....||.||+|
T Consensus 186 ~~~~--~--------------~~~~~~~~~~~~~~Gv~--~~~~~~v~~~---------~~~~~-----~~~~~D~vilA 233 (467)
T TIGR01318 186 SFKL--D--------------KAVLSRRREIFTAMGIE--FHLNCEVGRD---------ISLDD-----LLEDYDAVFLG 233 (467)
T ss_pred cccC--C--------------HHHHHHHHHHHHHCCCE--EECCCEeCCc---------cCHHH-----HHhcCCEEEEE
Confidence 1111 0 55666777778888988 8888766220 11111 13479999999
Q ss_pred eCCCCCc-ccCCCCCCCCCCcceeecc-----------cC---CC--CCCCCCCeEEEEccCCCHHHHHHHHhccCC-EE
Q 018550 162 NGHFSVP-RLAQVPGIDSWPGKQMHSH-----------NY---RI--PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EV 223 (354)
Q Consensus 162 tG~~s~~-~~p~~~g~~~~~~~~~~~~-----------~~---~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v 223 (354)
|| +.+ +.+.++|.+.. + +.+.. .. .. .....+++++|||+|.+|+|+|..+.+.|. +|
T Consensus 234 tG--a~~~~~~~i~g~~~~-g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~V 309 (467)
T TIGR01318 234 VG--TYRSMRGGLPGEDAP-G-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASV 309 (467)
T ss_pred eC--CCCCCcCCCCCcCCC-C-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeE
Confidence 99 444 34567775531 1 11100 00 00 012357999999999999999999999984 79
Q ss_pred EEEEecCC------ccccccCCCCC-CeEEecceeEEec--CCc---EEEc---------c---------C--cEEecCE
Q 018550 224 HIASRSVA------DETHEKQPGYD-NMWLHSMVERANE--DGT---VVFR---------N---------G--RVVSADV 271 (354)
Q Consensus 224 ~~~~r~~~------~~~~~~l~~~~-~~~~~~~v~~v~~--~~~---v~~~---------~---------g--~~~~~D~ 271 (354)
++++|++. +.....+.+.+ ++++++.+.++.. ++. |++. + | .++++|.
T Consensus 310 tvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~ 389 (467)
T TIGR01318 310 TCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADV 389 (467)
T ss_pred EEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCE
Confidence 99998763 22233343444 8888888888863 232 2221 1 1 3689999
Q ss_pred EEEcccCCCccCcccccCch--------------------hhhhceeeeecccchh
Q 018550 272 IMHCTGLTGTSTTTLFLKPM--------------------ALLLWMTIVLGHCTST 307 (354)
Q Consensus 272 vi~a~G~~~~~p~~~~l~~~--------------------~~~~~~i~a~GD~~~~ 307 (354)
||+|+|+.|+. ..++... .....+||++||++..
T Consensus 390 Vi~a~G~~p~~--~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~ 443 (467)
T TIGR01318 390 VIMAFGFQPHA--MPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRG 443 (467)
T ss_pred EEECCcCCCCc--cccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCC
Confidence 99999999431 1222211 0112459999999874
No 73
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.90 E-value=4.4e-23 Score=188.89 Aligned_cols=277 Identities=19% Similarity=0.264 Sum_probs=201.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
+.+++|||-|++|..+..++.+. -+++++|-..+.+ .+ +...
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~----nY-----------------------~Ri~-------- 47 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP----NY-----------------------NRIL-------- 47 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc----cc-----------------------ccee--------
Confidence 47899999999999999999984 3689999876543 11 1000
Q ss_pred cccC-CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 79 GFQA-YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
++. ++-+ -+.+++.-...+++.+++++ ++.+.+|+.|++ ...+|+++.|. .+.||.
T Consensus 48 -Ls~vl~~~-------------~~~edi~l~~~dwy~~~~i~--L~~~~~v~~idr---~~k~V~t~~g~----~~~YDk 104 (793)
T COG1251 48 -LSSVLAGE-------------KTAEDISLNRNDWYEENGIT--LYTGEKVIQIDR---ANKVVTTDAGR----TVSYDK 104 (793)
T ss_pred -eccccCCC-------------ccHHHHhccchhhHHHcCcE--EEcCCeeEEecc---CcceEEccCCc----Eeecce
Confidence 000 0000 01156666677888999999 999999999998 44778888875 899999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
+|+||| |.|.++++||..... ++....+.+. .....++-+|||||..|+|+|..|...|-+++|++-++.
T Consensus 105 LilATG--S~pfi~PiPG~~~~~--v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l 180 (793)
T COG1251 105 LIIATG--SYPFILPIPGSDLPG--VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL 180 (793)
T ss_pred eEEecC--ccccccCCCCCCCCC--eeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchH
Confidence 999999 999999999987632 1211111110 011335579999999999999999999999999998875
Q ss_pred ----------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhh---
Q 018550 232 ----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL--- 294 (354)
Q Consensus 232 ----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~--- 294 (354)
..+..++++.+ +++++.+.+++...+. +.++||..+++|+|+||+|.+ ||+++....+..
T Consensus 181 MerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIr---Pn~ela~~aGlavnr 257 (793)
T COG1251 181 MERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIR---PNDELAKEAGLAVNR 257 (793)
T ss_pred HHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccc---cccHhHHhcCcCcCC
Confidence 22344556666 8999988888875443 888999999999999999999 998887655544
Q ss_pred -----------hceeeeecccch----------hhHHHHHHHhhhccCCCcccccCCCCCc---cccCCchhhh
Q 018550 295 -----------LWMTIVLGHCTS----------TFFRQSWHQAFHLLGYHRRLSLSPSLNS---RASGLPVFCL 344 (354)
Q Consensus 295 -----------~~~i~a~GD~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 344 (354)
..+|||+|+|+. +.+.|+...|.|+.+.... .|..+..+ .++|.-++..
T Consensus 258 GIvvnd~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~-~y~gsv~stkLKv~Gvdl~S~ 330 (793)
T COG1251 258 GIVVNDYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAE-AYEGSVTSTKLKVSGVDVFSA 330 (793)
T ss_pred CeeecccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccc-ccccccchhhhcccccceeec
Confidence 345999999997 4688888889998776553 33333322 3366655544
No 74
>PRK13984 putative oxidoreductase; Provisional
Probab=99.89 E-value=2.2e-22 Score=192.63 Aligned_cols=234 Identities=24% Similarity=0.317 Sum_probs=150.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+++|..|+++|++|+++|+.+.+||.+.+. ++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~-----------------------------------i~ 327 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG-----------------------------------IP 327 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec-----------------------------------CC
Confidence 4689999999999999999999999999999998888877651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. + .++.....+.+++++++ +++++.|.. + +...+ ....||+||+|
T Consensus 328 ~~~~--------------~--~~~~~~~~~~~~~~gv~--~~~~~~v~~-~--------~~~~~-----~~~~yD~vilA 375 (604)
T PRK13984 328 SYRL--------------P--DEALDKDIAFIEALGVK--IHLNTRVGK-D--------IPLEE-----LREKHDAVFLS 375 (604)
T ss_pred cccC--------------C--HHHHHHHHHHHHHCCcE--EECCCEeCC-c--------CCHHH-----HHhcCCEEEEE
Confidence 0000 0 44555556677778888 888877632 0 11111 13579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC---------CC-CCCCCCeEEEEccCCCHHHHHHHHhccCC------EEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR---------IP-NPFQDQVVILIGHYASGLDIKRDLAGFAK------EVHI 225 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~---------~~-~~~~~~~v~ViG~G~~g~e~a~~l~~~g~------~v~~ 225 (354)
||+ ..++.++++|.+.. .++....+. .. ....+++++|||||.+|+|+|..+++.+. +|++
T Consensus 376 tGa-~~~r~l~i~G~~~~--gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v 452 (604)
T PRK13984 376 TGF-TLGRSTRIPGTDHP--DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKV 452 (604)
T ss_pred cCc-CCCccCCCCCcCCc--CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEE
Confidence 994 23677788886531 111111110 00 11246899999999999999999988753 6888
Q ss_pred EEec-CC------ccccccCCCCC-CeEEecceeEEec-CCc---EEEc-------------------cCcEEecCEEEE
Q 018550 226 ASRS-VA------DETHEKQPGYD-NMWLHSMVERANE-DGT---VVFR-------------------NGRVVSADVIMH 274 (354)
Q Consensus 226 ~~r~-~~------~~~~~~l~~~~-~~~~~~~v~~v~~-~~~---v~~~-------------------~g~~~~~D~vi~ 274 (354)
+... .. ......+.+.+ +++.+..+.++.. ++. |.+. ++.++++|+||+
T Consensus 453 ~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~ 532 (604)
T PRK13984 453 TSLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVE 532 (604)
T ss_pred eccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEE
Confidence 7432 11 11111122233 7777777766652 222 2221 124689999999
Q ss_pred cccCCCccCcccccCch-h--h---------------hhceeeeecccchhh
Q 018550 275 CTGLTGTSTTTLFLKPM-A--L---------------LLWMTIVLGHCTSTF 308 (354)
Q Consensus 275 a~G~~~~~p~~~~l~~~-~--~---------------~~~~i~a~GD~~~~~ 308 (354)
|+|+. |+++++... . . ...+|||+||++...
T Consensus 533 aiG~~---p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~ 581 (604)
T PRK13984 533 AIGQA---PDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGP 581 (604)
T ss_pred eeCCC---CChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCch
Confidence 99999 766665321 0 0 123599999999743
No 75
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.89 E-value=5.8e-22 Score=190.03 Aligned_cols=234 Identities=21% Similarity=0.299 Sum_probs=153.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||+|+++|..|++.|++|++||+.+.+||.+.+. +.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------ip-------------------------- 354 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------IP-------------------------- 354 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------CC--------------------------
Confidence 4789999999999999999999999999999999999888761 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.+ + .++.+...+.+..+|++ +++++++.. .++..+ ....||.|++|
T Consensus 355 ~~~l--------------~--~~~~~~~~~~~~~~Gv~--~~~~~~v~~---------~~~~~~-----l~~~~DaV~la 402 (639)
T PRK12809 355 PFKL--------------D--KTVLSQRREIFTAMGID--FHLNCEIGR---------DITFSD-----LTSEYDAVFIG 402 (639)
T ss_pred cccC--------------C--HHHHHHHHHHHHHCCeE--EEcCCccCC---------cCCHHH-----HHhcCCEEEEe
Confidence 1111 1 45556666777888988 888776521 011111 13478999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeec-----------ccCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhccC-CEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHS-----------HNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVH 224 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~-----------~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~v~ 224 (354)
||++ .++.+.++|.+. .+. +.. ..... .....+++++|||+|.+|+|+|..+.+.| ++|+
T Consensus 403 tGa~-~~~~~~i~g~~~-~gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt 479 (639)
T PRK12809 403 VGTY-GMMRADLPHEDA-PGV-IQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVT 479 (639)
T ss_pred CCCC-CCCCCCCCCCcc-CCc-EeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence 9963 344556666543 111 110 00000 11236799999999999999999988888 4799
Q ss_pred EEEecCCc------cccccCCCCC-CeEEecceeEEec--CCcE---EE---c------cC-----------cEEecCEE
Q 018550 225 IASRSVAD------ETHEKQPGYD-NMWLHSMVERANE--DGTV---VF---R------NG-----------RVVSADVI 272 (354)
Q Consensus 225 ~~~r~~~~------~~~~~l~~~~-~~~~~~~v~~v~~--~~~v---~~---~------~g-----------~~~~~D~v 272 (354)
+++|++.. .....+.+.+ ++++.+.++++.. +++| .+ . +| .++++|+|
T Consensus 480 ~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~V 559 (639)
T PRK12809 480 CAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVL 559 (639)
T ss_pred EeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEE
Confidence 99987531 1122223344 8888888888863 3332 11 1 12 36899999
Q ss_pred EEcccCCCccCcccccCchh--------------------hhhceeeeecccchh
Q 018550 273 MHCTGLTGTSTTTLFLKPMA--------------------LLLWMTIVLGHCTST 307 (354)
Q Consensus 273 i~a~G~~~~~p~~~~l~~~~--------------------~~~~~i~a~GD~~~~ 307 (354)
|+|+|+.++. ..++...+ ....+|||+||+...
T Consensus 560 i~AiG~~p~~--~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g 612 (639)
T PRK12809 560 IMAFGFQAHA--MPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHG 612 (639)
T ss_pred EECcCCCCCc--cccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCC
Confidence 9999999421 12332211 112459999999874
No 76
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.89 E-value=2.4e-22 Score=185.22 Aligned_cols=201 Identities=20% Similarity=0.277 Sum_probs=140.4
Q ss_pred HHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE--eCEEEEeeCCCCCcccCCCCCCCCCCcceeecc
Q 018550 110 QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET--FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSH 187 (354)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~--~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~ 187 (354)
.+++.+++++ ++.+++|++++..+ +.+.+....+ + ..+. ||+||+||| +.|+.|.++|.+.. ..+...
T Consensus 51 ~~~~~~~gv~--~~~~~~V~~id~~~-~~v~~~~~~~-~--~~~~~~yd~lIiATG--~~p~~~~i~G~~~~--~v~~~~ 120 (427)
T TIGR03385 51 EVFIKKRGID--VKTNHEVIEVNDER-QTVVVRNNKT-N--ETYEESYDYLILSPG--ASPIVPNIEGINLD--IVFTLR 120 (427)
T ss_pred HHHHHhcCCe--EEecCEEEEEECCC-CEEEEEECCC-C--CEEecCCCEEEECCC--CCCCCCCCCCcCCC--CEEEEC
Confidence 4455777888 88889999998754 4444433211 1 2566 999999999 78898888886521 122221
Q ss_pred cCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-----------cccccCCCCC-CeEEec
Q 018550 188 NYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-----------ETHEKQPGYD-NMWLHS 248 (354)
Q Consensus 188 ~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-----------~~~~~l~~~~-~~~~~~ 248 (354)
...+. ....+++++|||+|++|+|+|..|++.|.+|+++.+.+.. ...+.+++.+ +++.++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~ 200 (427)
T TIGR03385 121 NLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNE 200 (427)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCC
Confidence 11100 1135689999999999999999999999999999987631 1122334444 888999
Q ss_pred ceeEEecCCc-EEEccCcEEecCEEEEcccCCCccCcccccCchhhh----------------hceeeeecccchh----
Q 018550 249 MVERANEDGT-VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL----------------LWMTIVLGHCTST---- 307 (354)
Q Consensus 249 ~v~~v~~~~~-v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~----------------~~~i~a~GD~~~~---- 307 (354)
.|+++..++. +++.+|+++++|.+|+|+|++ |+++++...+.. ..+|||+|||+..
T Consensus 201 ~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~---p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~ 277 (427)
T TIGR03385 201 EVDSIEGEERVKVFTSGGVYQADMVILATGIK---PNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNII 277 (427)
T ss_pred EEEEEecCCCEEEEcCCCEEEeCEEEECCCcc---CCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeecc
Confidence 9999987665 367788899999999999999 777666543221 2349999999852
Q ss_pred ------------hHHHHHHHhhhccCCC
Q 018550 308 ------------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 308 ------------~~~~~~~~~~~~~~~~ 323 (354)
...|+...|.++.+..
T Consensus 278 ~~~~~~~~~~~~A~~~g~~~a~ni~g~~ 305 (427)
T TIGR03385 278 TKKPAWVPLAWGANKMGRIAGENIAGND 305 (427)
T ss_pred CCCceeeechHHHHHHHHHHHHHhcCCC
Confidence 2345566677776653
No 77
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.88 E-value=3.8e-22 Score=171.75 Aligned_cols=251 Identities=14% Similarity=0.151 Sum_probs=165.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|||+|+|.+|++++..|-...++|+++++++.+--++..+ ....+-.
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLp------------------------------S~~vGTv 104 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLP------------------------------STTVGTV 104 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccC------------------------------Cccccce
Confidence 5789999999999999999999999999999876553333321 1111100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee--cCCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK--KDDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~--g~~~~~~~~~d~vI 159 (354)
+ ...+.+-.+....+..... -.++.+..+|+.+. +........ +...+..+.||++|
T Consensus 105 e-------------------~rSIvEPIr~i~r~k~~~~-~y~eAec~~iDp~~-k~V~~~s~t~~~~~~e~~i~YDyLV 163 (491)
T KOG2495|consen 105 E-------------------LRSIVEPIRAIARKKNGEV-KYLEAECTKIDPDN-KKVHCRSLTADSSDKEFVIGYDYLV 163 (491)
T ss_pred e-------------------ehhhhhhHHHHhhccCCCc-eEEecccEeecccc-cEEEEeeeccCCCcceeeecccEEE
Confidence 0 1566677777666543231 34567778888765 444433322 22345789999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcc---eee----------cc---cC---CCCCCCCCCeEEEEccCCCHHHHHHHHhcc-
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGK---QMH----------SH---NY---RIPNPFQDQVVILIGHYASGLDIKRDLAGF- 219 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~---~~~----------~~---~~---~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~- 219 (354)
+|+| +.+..+.+||..++... +-+ +. .. .+++..+-.+++|||||++|+|+|.+|+..
T Consensus 164 iA~G--A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi 241 (491)
T KOG2495|consen 164 IAVG--AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFI 241 (491)
T ss_pred Eecc--CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHH
Confidence 9999 88999999987763110 000 00 00 111112335699999999999999999752
Q ss_pred -------------CCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCcEEEccC----cEEecCE
Q 018550 220 -------------AKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNG----RVVSADV 271 (354)
Q Consensus 220 -------------g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g----~~~~~D~ 271 (354)
--+||++...+. +-+.+++.+.+ .+..++.|+.+.++. ++.+.+ ++||+-+
T Consensus 242 ~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~-I~~~~~~g~~~~iPYG~ 320 (491)
T KOG2495|consen 242 PEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT-IHAKTKDGEIEEIPYGL 320 (491)
T ss_pred HHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcE-EEEEcCCCceeeecceE
Confidence 236899988874 22333444444 888899999998776 665544 7899999
Q ss_pred EEEcccCCCccCcccccCchhhhh---------------ceeeeecccch
Q 018550 272 IMHCTGLTGTSTTTLFLKPMALLL---------------WMTIVLGHCTS 306 (354)
Q Consensus 272 vi~a~G~~~~~p~~~~l~~~~~~~---------------~~i~a~GD~~~ 306 (354)
++|+||..+.---..|..+....+ .+|||+|||+.
T Consensus 321 lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~ 370 (491)
T KOG2495|consen 321 LVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCAD 370 (491)
T ss_pred EEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccc
Confidence 999999985522233443333222 23999999993
No 78
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.88 E-value=5e-21 Score=177.78 Aligned_cols=233 Identities=24% Similarity=0.376 Sum_probs=148.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|++|+++|..|++.|++|++||+.+.+||.+.+. ++.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g-----------------------------------ip~ 188 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG-----------------------------------IPN 188 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc-----------------------------------CCC
Confidence 689999999999999999999999999999988888777651 001
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+.. ..++.....+.+.+.|++ +++++.+.. + +.. +. ....||.|++||
T Consensus 189 ~~~----------------~~~~~~~~~~~~~~~Gv~--~~~~~~v~~-~--------~~~-~~----~~~~~d~VilAt 236 (485)
T TIGR01317 189 MKL----------------DKAIVDRRIDLLSAEGID--FVTNTEIGV-D--------ISA-DE----LKEQFDAVVLAG 236 (485)
T ss_pred ccC----------------CHHHHHHHHHHHHhCCCE--EECCCEeCC-c--------cCH-HH----HHhhCCEEEEcc
Confidence 110 034555555667778888 888777631 1 100 11 135799999999
Q ss_pred CCCCCcccCCCCCCCCCCcceeeccc--------CC-------CCCCCCCCeEEEEccCCCHHHHHHHHhccC-CEEEEE
Q 018550 163 GHFSVPRLAQVPGIDSWPGKQMHSHN--------YR-------IPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIA 226 (354)
Q Consensus 163 G~~s~~~~p~~~g~~~~~~~~~~~~~--------~~-------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~v~~~ 226 (354)
|++ .++.++++|.+. . .+..... .. ......+++|+|||+|.+|+|+|..+.+.+ +.|+++
T Consensus 237 Ga~-~~~~l~i~G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv 313 (485)
T TIGR01317 237 GAT-KPRDLPIPGREL-K-GIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQF 313 (485)
T ss_pred CCC-CCCcCCCCCcCC-C-CcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 942 378888888653 1 1111100 00 011246799999999999999988887776 579999
Q ss_pred EecCCcc-------c-------------cccCC-CCC--CeEEecceeEEecC--Cc---EEE--------ccC------
Q 018550 227 SRSVADE-------T-------------HEKQP-GYD--NMWLHSMVERANED--GT---VVF--------RNG------ 264 (354)
Q Consensus 227 ~r~~~~~-------~-------------~~~l~-~~~--~~~~~~~v~~v~~~--~~---v~~--------~~g------ 264 (354)
.+.+... . .++.. ..+ .+++.+.+.++..+ +. +.+ ++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~ 393 (485)
T TIGR01317 314 EIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVE 393 (485)
T ss_pred EecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCcccee
Confidence 8765310 0 01111 112 33456667776543 22 221 123
Q ss_pred -----cEEecCEEEEcccCCCccCcccccCchhhh-----------------hceeeeecccchh
Q 018550 265 -----RVVSADVIMHCTGLTGTSTTTLFLKPMALL-----------------LWMTIVLGHCTST 307 (354)
Q Consensus 265 -----~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~-----------------~~~i~a~GD~~~~ 307 (354)
.++++|+||+|+|+.+ |++++++..+.. ..+|||+||++..
T Consensus 394 ~~g~~~~i~~D~Vi~AiG~~~--p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g 456 (485)
T TIGR01317 394 IPGSEEVFEADLVLLAMGFVG--PEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRG 456 (485)
T ss_pred cCCceEEEECCEEEEccCcCC--CccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCC
Confidence 3689999999999851 444454433221 1349999999863
No 79
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.88 E-value=1.8e-21 Score=178.16 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=109.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHH--cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+||||||||+++|..|++ .|++|+|||+.+.+||.+++. ..|
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~g---------vaP----------------------- 73 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSG---------VAP----------------------- 73 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeec---------cCC-----------------------
Confidence 5789999999999999999987 799999999999999888762 110
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.++....+...+.+.+...+++ ++.+.++- ..++..+- ...||.||
T Consensus 74 ------------------~~~~~k~v~~~~~~~~~~~~v~--~~~nv~vg---------~dvtl~~L-----~~~yDaVI 119 (491)
T PLN02852 74 ------------------DHPETKNVTNQFSRVATDDRVS--FFGNVTLG---------RDVSLSEL-----RDLYHVVV 119 (491)
T ss_pred ------------------CcchhHHHHHHHHHHHHHCCeE--EEcCEEEC---------ccccHHHH-----hhhCCEEE
Confidence 0111144556666666666666 66655441 11222221 34799999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccC----------CC--CCCCCCCeEEEEccCCCHHHHHHHHhcc--------
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNY----------RI--PNPFQDQVVILIGHYASGLDIKRDLAGF-------- 219 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~----------~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~-------- 219 (354)
+|||++ .++.+.++|.+.. .++....+ .. .....+++++|||+|.+|+|+|..|.+.
T Consensus 120 lAtGa~-~~~~l~IpG~d~~--gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~td 196 (491)
T PLN02852 120 LAYGAE-SDRRLGIPGEDLP--GVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTD 196 (491)
T ss_pred EecCCC-CCCCCCCCCCCCC--CeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCcccccccc
Confidence 999942 2467778886531 11211111 00 1123579999999999999999998764
Q ss_pred ------------C-CEEEEEEecCC
Q 018550 220 ------------A-KEVHIASRSVA 231 (354)
Q Consensus 220 ------------g-~~v~~~~r~~~ 231 (354)
+ .+|+++.|+.+
T Consensus 197 i~~~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 197 IAEHALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred ccHHHHHHHhhCCCCEEEEEEcCCh
Confidence 4 56999999885
No 80
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.87 E-value=3.9e-21 Score=182.39 Aligned_cols=231 Identities=27% Similarity=0.374 Sum_probs=151.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||+|+++|..|++.|++|+++|+.+.+||.+.+. ++
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip 181 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG-----------------------------------IP 181 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence 3689999999999999999999999999999999998877651 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEE-EEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v-~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.+.. + .++.+...+.+.++|++ +.+++.+ .++.... ....||+||+
T Consensus 182 ~~~~--------------~--~~~~~~~l~~~~~~Gv~--~~~~~~~~~~~~~~~---------------~~~~~D~Vi~ 228 (564)
T PRK12771 182 AYRL--------------P--REVLDAEIQRILDLGVE--VRLGVRVGEDITLEQ---------------LEGEFDAVFV 228 (564)
T ss_pred CccC--------------C--HHHHHHHHHHHHHCCCE--EEeCCEECCcCCHHH---------------HHhhCCEEEE
Confidence 1111 1 44455555666778887 7777655 3321110 0225899999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccC-----CCCCCCCCCeEEEEccCCCHHHHHHHHhccC-CEEEEEEecCCcc-
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNY-----RIPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVADE- 233 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~~~~- 233 (354)
|+|++ .+..+.+++... .+ ......+ .......+++++|||+|.+|+|.+..+.+.+ ++|+++.|.+.+.
T Consensus 229 AtG~~-~~~~~~i~g~~~-~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~ 305 (564)
T PRK12771 229 AIGAQ-LGKRLPIPGEDA-AG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDM 305 (564)
T ss_pred eeCCC-CCCcCCCCCCcc-CC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccC
Confidence 99953 233445666432 11 1111111 1112345789999999999999999888888 6799999876421
Q ss_pred -----ccccCC-CCCCeEEecceeEEecCC-c---E---EE------c-------cC--cEEecCEEEEcccCCCccCcc
Q 018550 234 -----THEKQP-GYDNMWLHSMVERANEDG-T---V---VF------R-------NG--RVVSADVIMHCTGLTGTSTTT 285 (354)
Q Consensus 234 -----~~~~l~-~~~~~~~~~~v~~v~~~~-~---v---~~------~-------~g--~~~~~D~vi~a~G~~~~~p~~ 285 (354)
.+..+. ...++++...+.++..++ . + .+ . +| .++++|+||+|+|+. |+.
T Consensus 306 ~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~---p~~ 382 (564)
T PRK12771 306 PAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD---IDS 382 (564)
T ss_pred CCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC---Cch
Confidence 122222 334888888888886432 1 1 11 1 12 478999999999999 666
Q ss_pred cccCc-hhh----------------hhceeeeecccch
Q 018550 286 LFLKP-MAL----------------LLWMTIVLGHCTS 306 (354)
Q Consensus 286 ~~l~~-~~~----------------~~~~i~a~GD~~~ 306 (354)
+++.+ .+. ...+||++||+..
T Consensus 383 ~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~ 420 (564)
T PRK12771 383 AGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVP 420 (564)
T ss_pred hhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCC
Confidence 66543 111 1245999999986
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.83 E-value=1.7e-19 Score=155.17 Aligned_cols=268 Identities=19% Similarity=0.161 Sum_probs=177.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
..|++.||-||+-+++|..|.+++ .+...+||.+. -.|+.. .+.|...+..+++-+......|...+.|
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~--F~WHpG--------mllegstlQv~FlkDLVTl~~PTs~ySF 74 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD--FSWHPG--------MLLEGSTLQVPFLKDLVTLVDPTSPYSF 74 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCC--CCcCCC--------cccCCccccccchhhhccccCCCCchHH
Confidence 368999999999999999999986 68999999654 355542 3333333444444444445555555555
Q ss_pred cCCCCCccCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEE--EEEeecCCceEEEEeC
Q 018550 81 QAYPFVARNYE-GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWK--VKSRKKDDVVEEETFD 156 (354)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~--v~~~~g~~~~~~~~~d 156 (354)
.++-....++- +......++.|.++.+|+++.+..+ -. ++++++|++|...+. .... +.+.+++ .+.+.
T Consensus 75 LNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~--~rfg~~V~~i~~~~~d~~~~~~~~t~~~~----~y~ar 147 (436)
T COG3486 75 LNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PS--LRFGEEVTDISSLDGDAVVRLFVVTANGT----VYRAR 147 (436)
T ss_pred HHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC-Cc--cccCCeeccccccCCcceeEEEEEcCCCc----EEEee
Confidence 44433333222 2223456689999999999999998 44 899999997744321 2333 3333333 89999
Q ss_pred EEEEeeCCCCCcccCCC-CCCCCCCcceeecccCCCC--CCCCCCeEEEEccCCCHHHHHHHHhcc----CCEEEEEEec
Q 018550 157 AVVVCNGHFSVPRLAQV-PGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGF----AKEVHIASRS 229 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~-~g~~~~~~~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~----g~~v~~~~r~ 229 (354)
.||+++| .+|.+|+. ..+.. .+++|+.++... +....++|.|||+|.+|+|+...|... ..++.|++|+
T Consensus 148 ~lVlg~G--~~P~IP~~f~~l~~--~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~ 223 (436)
T COG3486 148 NLVLGVG--TQPYIPPCFRSLIG--ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRS 223 (436)
T ss_pred eEEEccC--CCcCCChHHhCcCc--cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeecc
Confidence 9999999 89999862 22221 367787776432 222334599999999999999998643 3469999998
Q ss_pred CC------------------------------c-------------------c----ccc-cCC---CCCCeEEecceeE
Q 018550 230 VA------------------------------D-------------------E----THE-KQP---GYDNMWLHSMVER 252 (354)
Q Consensus 230 ~~------------------------------~-------------------~----~~~-~l~---~~~~~~~~~~v~~ 252 (354)
.. + + .++ ++. ....++..+.|+.
T Consensus 224 ~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~ 303 (436)
T COG3486 224 SGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQS 303 (436)
T ss_pred CCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceee
Confidence 84 0 0 000 111 1125678889999
Q ss_pred EecCC--c--EEEcc---C--cEEecCEEEEcccCCCccCcccccCchh
Q 018550 253 ANEDG--T--VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMA 292 (354)
Q Consensus 253 v~~~~--~--v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~ 292 (354)
++..| . +.+.+ + .+++.|.||+|||++...| .|+.++.
T Consensus 304 ~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P--~fL~~l~ 350 (436)
T COG3486 304 VEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVP--SFLEGLA 350 (436)
T ss_pred eecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCc--hhhhhHH
Confidence 98554 2 33322 2 5788999999999996656 3554444
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.78 E-value=2.1e-18 Score=165.83 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=33.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg 39 (354)
.++|+|||+||||+++|+.|++.|++|+++|+.+..|+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 47999999999999999999999999999998654433
No 83
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.75 E-value=2.7e-17 Score=155.71 Aligned_cols=156 Identities=29% Similarity=0.390 Sum_probs=110.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||||++||-+|.+.|+.|+++||.+.+||.+.+. ++
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg-----------------------------------ip 1829 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG-----------------------------------IP 1829 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec-----------------------------------CC
Confidence 4789999999999999999999999999999999999999872 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+..+ ..+.+...+...+.|++ +..|+++- +. +. -++ ..-..|.||+|
T Consensus 1830 nmkld----------------k~vv~rrv~ll~~egi~--f~tn~eig--------k~-vs-~d~----l~~~~daiv~a 1877 (2142)
T KOG0399|consen 1830 NMKLD----------------KFVVQRRVDLLEQEGIR--FVTNTEIG--------KH-VS-LDE----LKKENDAIVLA 1877 (2142)
T ss_pred ccchh----------------HHHHHHHHHHHHhhCce--EEeecccc--------cc-cc-HHH----HhhccCeEEEE
Confidence 11110 34566667777778988 88777662 21 11 121 23478999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeec-ccC--------C----CC--CCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHS-HNY--------R----IP--NPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHI 225 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~-~~~--------~----~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~ 225 (354)
+|+ ..|+.++++|-+. +.++. .++ . +. ...++|+|+|||||.+|-++...-.++|. +|--
T Consensus 1878 ~gs-t~prdlpv~grd~---kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n 1953 (2142)
T KOG0399|consen 1878 TGS-TTPRDLPVPGRDL---KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGN 1953 (2142)
T ss_pred eCC-CCCcCCCCCCccc---cccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecc
Confidence 996 6788888888553 11110 000 0 00 12378999999999999999988888875 3544
Q ss_pred EEe
Q 018550 226 ASR 228 (354)
Q Consensus 226 ~~r 228 (354)
+.-
T Consensus 1954 ~el 1956 (2142)
T KOG0399|consen 1954 FEL 1956 (2142)
T ss_pred eee
Confidence 443
No 84
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.72 E-value=5.6e-17 Score=140.15 Aligned_cols=158 Identities=18% Similarity=0.310 Sum_probs=116.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC-CCCCCCCCc--cc---ccccccchhccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-LGVDPNRYP--VH---SSLYKSLRVNLP 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~-~~~~~~~~~--~~---~~~~~~~~~~~~ 74 (354)
+.++|+||||||||++||..++++|.+|+|||+.+.+|..+...++...+- +.+.|...+ +. .+.+..+....+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 358999999999999999999999999999999999987776655443111 111111110 11 344555555556
Q ss_pred ccccccc---CCCCCccCCCCCCCCCCCCC---HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 75 RELMGFQ---AYPFVARNYEGSVDLRRYPG---HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 75 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
++.+.+. +..+. .+.+.+.||. ...+.+.+...+++.|++ ++++++|.+++.++ ..+.+.+.++.
T Consensus 82 ~d~i~~~e~~Gi~~~-----e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~-~~f~l~t~~g~- 152 (408)
T COG2081 82 EDFIDWVEGLGIALK-----EEDLGRMFPDSDKASPIVDALLKELEALGVT--IRTRSRVSSVEKDD-SGFRLDTSSGE- 152 (408)
T ss_pred HHHHHHHHhcCCeeE-----EccCceecCCccchHHHHHHHHHHHHHcCcE--EEecceEEeEEecC-ceEEEEcCCCC-
Confidence 5555542 22222 2356777876 367888888888899999 99999999999987 78999999985
Q ss_pred ceEEEEeCEEEEeeCCCCCccc
Q 018550 149 VVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.||.+|+|||..|.|++
T Consensus 153 ---~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 153 ---TVKCDSLILATGGKSWPKL 171 (408)
T ss_pred ---EEEccEEEEecCCcCCCCC
Confidence 8999999999998777754
No 85
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.71 E-value=5.3e-17 Score=147.44 Aligned_cols=158 Identities=26% Similarity=0.422 Sum_probs=114.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||||+++|..|++.|+.|+++|+.+..||.+.+. ++
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG-----------------------------------IP 167 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG-----------------------------------IP 167 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec-----------------------------------Cc
Confidence 3689999999999999999999999999999999999999872 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
++..+ .++.+...+.+.+.|++ ++.++++-. .++.++ ..-.+|+|++|
T Consensus 168 ~~kl~----------------k~i~d~~i~~l~~~Gv~--~~~~~~vG~---------~it~~~-----L~~e~Dav~l~ 215 (457)
T COG0493 168 DFKLP----------------KDILDRRLELLERSGVE--FKLNVRVGR---------DITLEE-----LLKEYDAVFLA 215 (457)
T ss_pred hhhcc----------------chHHHHHHHHHHHcCeE--EEEcceECC---------cCCHHH-----HHHhhCEEEEe
Confidence 22111 67888888899998977 888877731 122222 12355999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeeccc------------CC--CCCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHN------------YR--IPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA 226 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~------------~~--~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~ 226 (354)
+|. ..|+..+++|.+.- .+....+ +. ......+++++|||+|.+++|++....+.|+ +|+.+
T Consensus 216 ~G~-~~~~~l~i~g~d~~--gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~ 292 (457)
T COG0493 216 TGA-GKPRPLDIPGEDAK--GVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCF 292 (457)
T ss_pred ccc-cCCCCCCCCCcCCC--cchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEe
Confidence 997 68888888887531 1111000 10 1112245999999999999999999888886 68888
Q ss_pred Eec
Q 018550 227 SRS 229 (354)
Q Consensus 227 ~r~ 229 (354)
.+.
T Consensus 293 ~~~ 295 (457)
T COG0493 293 YRE 295 (457)
T ss_pred ccc
Confidence 643
No 86
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.67 E-value=4.3e-16 Score=143.43 Aligned_cols=175 Identities=21% Similarity=0.192 Sum_probs=122.2
Q ss_pred HHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCC
Q 018550 114 REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193 (354)
Q Consensus 114 ~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~ 193 (354)
.+.++. +..+++|.+++.. ...+.+.++ ++.||++++||| +.++.++ +... ..........+..
T Consensus 64 ~~~~i~--~~~~~~v~~id~~---~~~v~~~~g-----~~~yd~LvlatG--a~~~~~~--~~~~--~~~~~~~~~~~~~ 127 (415)
T COG0446 64 RATGID--VRTGTEVTSIDPE---NKVVLLDDG-----EIEYDYLVLATG--ARPRPPP--ISDW--EGVVTLRLREDAE 127 (415)
T ss_pred HhhCCE--EeeCCEEEEecCC---CCEEEECCC-----cccccEEEEcCC--CcccCCC--cccc--CceEEECCHHHHH
Confidence 345676 8888999999874 356666665 689999999999 7777765 1111 1112211111111
Q ss_pred -----CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--ccc---------cccCCCCC-CeEEecceeEEecC
Q 018550 194 -----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DET---------HEKQPGYD-NMWLHSMVERANED 256 (354)
Q Consensus 194 -----~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--~~~---------~~~l~~~~-~~~~~~~v~~v~~~ 256 (354)
....++++|||+|++|+++|..++++|.+|+++...+. ... .+.+++.+ +++.+..+.++..+
T Consensus 128 ~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~ 207 (415)
T COG0446 128 ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGK 207 (415)
T ss_pred HHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcc
Confidence 11247899999999999999999999999999999875 111 12224444 78899999999865
Q ss_pred Cc------EEEccCcEEecCEEEEcccCCCccCcccccCchh--hh----------------hceeeeecccchh
Q 018550 257 GT------VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMA--LL----------------LWMTIVLGHCTST 307 (354)
Q Consensus 257 ~~------v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~--~~----------------~~~i~a~GD~~~~ 307 (354)
.. +...++..+++|++++++|.+ ||+.+..... .. ..+||++|||...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~---p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~ 279 (415)
T COG0446 208 GNTLVVERVVGIDGEEIKADLVIIGPGER---PNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEI 279 (415)
T ss_pred cCcceeeEEEEeCCcEEEeeEEEEeeccc---ccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEee
Confidence 43 366777899999999999999 6665554432 11 1349999998773
No 87
>PRK09897 hypothetical protein; Provisional
Probab=99.66 E-value=5.4e-15 Score=137.33 Aligned_cols=210 Identities=17% Similarity=0.261 Sum_probs=122.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCC----CCCCCCCCCCCcccccccccchhcccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETE----SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (354)
+++|+|||||++|+++|..|.+.+ .+|+|||++..+|..+.+.+... +.+...... .......+..+......
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~-p~~~~~f~~Wl~~~~~~ 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEI-PPIYCTYLEWLQKQEDS 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhccccccc-CCChHHHHHHhhhhhHH
Confidence 468999999999999999998865 58999999888887766543211 111000000 00011111111110000
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
. +..+..... ......|+++..+.+|+++..+.+ |....++.+++|++++..+ +.|.+++.++.
T Consensus 80 -~--~~~~g~~~~----~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~~V~t~~gg- 150 (534)
T PRK09897 80 -H--LQRYGVKKE----TLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGVMLATNQDL- 150 (534)
T ss_pred -H--HHhcCCcce----eecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEEEEEECCCC-
Confidence 0 000010000 012346777777777777655432 3222366788999998877 77888875542
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCC--CCCCCCCCeEEEEccCCCHHHHHHHHhccC------
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR--IPNPFQDQVVILIGHYASGLDIKRDLAGFA------ 220 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g------ 220 (354)
..+.+|.||+|+|+ ..|..+ .+...| ....|. ......+.+|+|+|.|.+++|++..|...|
T Consensus 151 --~~i~aD~VVLAtGh-~~p~~~--~~~~~y-----i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~ 220 (534)
T PRK09897 151 --PSETFDLAVIATGH-VWPDEE--EATRTY-----FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIED 220 (534)
T ss_pred --eEEEcCEEEECCCC-CCCCCC--hhhccc-----cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceecc
Confidence 37899999999996 223222 111111 111111 111224689999999999999999987552
Q ss_pred ---------------CEEEEEEecCC
Q 018550 221 ---------------KEVHIASRSVA 231 (354)
Q Consensus 221 ---------------~~v~~~~r~~~ 231 (354)
.+|++++|+..
T Consensus 221 ~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 221 DKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred CCCcceeeecCCCCCceEEEEeCCCC
Confidence 26888888763
No 88
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.61 E-value=1.7e-15 Score=130.39 Aligned_cols=176 Identities=18% Similarity=0.163 Sum_probs=125.1
Q ss_pred CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCC-CCCC-CCCcceeecc---cCCC
Q 018550 117 GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQV-PGID-SWPGKQMHSH---NYRI 191 (354)
Q Consensus 117 ~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~-~g~~-~~~~~~~~~~---~~~~ 191 (354)
|+. +..+.+|+.|...+ ..|++++|. ++.||.+++||| .+|+..+. .... +...++...+ ++..
T Consensus 271 GvA--vl~G~kvvkid~~d---~~V~LnDG~----~I~YdkcLIATG--~~Pk~l~~~~~A~~evk~kit~fr~p~DF~r 339 (659)
T KOG1346|consen 271 GVA--VLRGRKVVKIDEED---KKVILNDGT----TIGYDKCLIATG--VRPKKLQVFEEASEEVKQKITYFRYPADFKR 339 (659)
T ss_pred ceE--EEeccceEEeeccc---CeEEecCCc----EeehhheeeecC--cCcccchhhhhcCHHhhhheeEEecchHHHH
Confidence 565 77888899988644 457778876 999999999999 77876653 2222 1122222211 1111
Q ss_pred CC--CCCCCeEEEEccCCCHHHHHHHHhcc----CCEEEEEEecCC-----------ccccccCCCCC-CeEEecceeEE
Q 018550 192 PN--PFQDQVVILIGHYASGLDIKRDLAGF----AKEVHIASRSVA-----------DETHEKQPGYD-NMWLHSMVERA 253 (354)
Q Consensus 192 ~~--~~~~~~v~ViG~G~~g~e~a~~l~~~----g~~v~~~~r~~~-----------~~~~~~l~~~~-~~~~~~~v~~v 253 (354)
.+ ....++|.|||+|..|-|+|..|.+. |.+|+-+-.... .+.++++.+.+ .++.+..|+.+
T Consensus 340 lek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv 419 (659)
T KOG1346|consen 340 LEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESV 419 (659)
T ss_pred HHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhh
Confidence 00 11347899999999999999999764 556655544332 34556666666 89999999998
Q ss_pred ecCCc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhhh----------------ceeeeecccch
Q 018550 254 NEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALLL----------------WMTIVLGHCTS 306 (354)
Q Consensus 254 ~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~~----------------~~i~a~GD~~~ 306 (354)
..+.. +.+.||.++..|+|+.|+|.. ||+++...++... .+||++||+..
T Consensus 420 ~~~~~nl~lkL~dG~~l~tD~vVvavG~e---PN~ela~~sgLeiD~~lGGfrvnaeL~ar~NvwvAGdaac 488 (659)
T KOG1346|consen 420 RKCCKNLVLKLSDGSELRTDLVVVAVGEE---PNSELAEASGLEIDEKLGGFRVNAELKARENVWVAGDAAC 488 (659)
T ss_pred hhhccceEEEecCCCeeeeeeEEEEecCC---CchhhcccccceeecccCcEEeeheeecccceeeecchhh
Confidence 75543 778999999999999999999 9999988777652 23999999876
No 89
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.60 E-value=8.6e-14 Score=123.58 Aligned_cols=216 Identities=19% Similarity=0.281 Sum_probs=131.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC---CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g---~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
+++|+|||+|++|+.+|.+|.+.- ..+.|||+.+.+|....+....+....... .. ......-..|.+..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~-a~------~mS~~~pD~p~~F~ 73 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVP-AA------RMSAFAPDIPQDFV 73 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccc-cc------cccccCCCCchHHH
Confidence 478999999999999999999863 249999999999988888644331111100 00 00000011111111
Q ss_pred cccCCC---CCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh---CCcc-eEEeceEEEEEEEeCC-CcEEEEEeecCCce
Q 018550 79 GFQAYP---FVARNYEGSVDLRRYPGHEEVLRYLQNFAREF---GVDQ-VVRLHTEVLNARLVES-NKWKVKSRKKDDVV 150 (354)
Q Consensus 79 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~-~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~ 150 (354)
.|.... ... ......+...||++..+.+|+.+....+ +-.. .....++++++.+.++ +.|.++..+|+
T Consensus 74 ~WL~~~~~~~~d-~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~--- 149 (474)
T COG4529 74 RWLQKQLQRYRD-PEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP--- 149 (474)
T ss_pred HHHHhcccccCC-hhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCC---
Confidence 111110 000 0011235678899999999999887655 1111 1344677788877632 67888888886
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC---CCCCCCeEEEEccCCCHHHHHHHHhccCC--EEEE
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP---NPFQDQVVILIGHYASGLDIKRDLAGFAK--EVHI 225 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~---~~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~v~~ 225 (354)
...||.+|+|||+ +.|..+. ..........+....+... ......+|+|+|+|.+.+|....|.++|. +||+
T Consensus 150 -~~~ad~~Vlatgh-~~~~~~~-~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~ 226 (474)
T COG4529 150 -SEIADIIVLATGH-SAPPADP-AARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITA 226 (474)
T ss_pred -eeeeeEEEEeccC-CCCCcch-hhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEE
Confidence 8899999999997 3333322 1111111111221112111 12245669999999999999999999874 5999
Q ss_pred EEecCC
Q 018550 226 ASRSVA 231 (354)
Q Consensus 226 ~~r~~~ 231 (354)
++|+..
T Consensus 227 iSRrGl 232 (474)
T COG4529 227 ISRRGL 232 (474)
T ss_pred Eecccc
Confidence 999874
No 90
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.58 E-value=4.6e-14 Score=127.67 Aligned_cols=42 Identities=33% Similarity=0.373 Sum_probs=38.4
Q ss_pred CCeEEEEcCChHHHHHHHHHH-HcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELL-REGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~-~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+||||||||+.+|..|+ +.|++|+|||+.+.+||.+++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 468999999999999999865 579999999999999999987
No 91
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.55 E-value=4.1e-15 Score=134.11 Aligned_cols=156 Identities=26% Similarity=0.356 Sum_probs=84.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc--------ceeecCC-CCCCCCCCCCCCCCcccccccccchhcc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTS-ETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g--------g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
|+|+||||||||++||..|++.|.+|+|+|+++.+| |.|+..+ ......+.. .......+....+....
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~--~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLS--GYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEEC--S-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhh--hcccchHHHHHHHhcCC
Confidence 689999999999999999999999999999999987 4444432 111000000 00000112222333333
Q ss_pred cccccccc-CCCCCccCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 74 PRELMGFQ-AYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 74 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
+.+...+. +...... .......|| ...++.+.+...+.+.+++ ++++++|.+|+..+++.+.|.++++
T Consensus 79 ~~d~~~ff~~~Gv~~~---~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~f~v~~~~~--- 150 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTK---IEEDGRVFPKSDKASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDGVFGVKTKNG--- 150 (409)
T ss_dssp HHHHHHHHHHTT--EE---E-STTEEEETT--HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTEEEEEEETTT---
T ss_pred HHHHHHHHHhcCCeEE---EcCCCEECCCCCcHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCceeEeeccCc---
Confidence 33333221 1211111 011233344 2367888888889999999 9999999999987734588888433
Q ss_pred eEEEEeCEEEEeeCCCCCcc
Q 018550 150 VEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~ 169 (354)
..+.+|.||+|||..+.|.
T Consensus 151 -~~~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 151 -GEYEADAVILATGGKSYPK 169 (409)
T ss_dssp -EEEEESEEEE----SSSGG
T ss_pred -ccccCCEEEEecCCCCccc
Confidence 4899999999999766554
No 92
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.49 E-value=2.2e-14 Score=116.29 Aligned_cols=82 Identities=13% Similarity=0.312 Sum_probs=56.1
Q ss_pred CcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCC-----CCCCCCCCeEEEEccCCCHHH
Q 018550 137 NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLD 211 (354)
Q Consensus 137 ~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e 211 (354)
....+.+.+|. .+.|++|++|+| ++|.+.. ++.+. +++-..+.. .-...++|.|+|+|.|-+++|
T Consensus 79 ~ehci~t~~g~----~~ky~kKOG~tg--~kPklq~-E~~n~---~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~E 148 (334)
T KOG2755|consen 79 SEHCIHTQNGE----KLKYFKLCLCTG--YKPKLQV-EGINP---KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAME 148 (334)
T ss_pred ccceEEecCCc----eeeEEEEEEecC--CCcceee-cCCCc---eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHH
Confidence 55677788775 899999999999 7776543 22222 222211111 112236899999999999999
Q ss_pred HHHHHhccCCEEEEEEecC
Q 018550 212 IKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 212 ~a~~l~~~g~~v~~~~r~~ 230 (354)
.+.++... +|+|....+
T Consensus 149 l~yElk~~--nv~w~ikd~ 165 (334)
T KOG2755|consen 149 LTYELKIL--NVTWKIKDE 165 (334)
T ss_pred HHHHhhcc--eeEEEecch
Confidence 99999754 677777665
No 93
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.48 E-value=2.3e-12 Score=113.49 Aligned_cols=42 Identities=36% Similarity=0.518 Sum_probs=39.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++++|||||+||+.||+.|++.|++|.|+||++.+||.+..
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 478999999999999999999999999999999999999765
No 94
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.39 E-value=6.3e-12 Score=107.55 Aligned_cols=159 Identities=23% Similarity=0.375 Sum_probs=107.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.+|.|||+||||+.+|..|.++ ++.|.++|+.+.+.|..++. .-|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG---------VAPD----------------------- 68 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG---------VAPD----------------------- 68 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec---------cCCC-----------------------
Confidence 5899999999999999999984 58999999999888888872 1111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEE-EEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v-~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.| --..+...+.+.+++.... +..|.+| .++.. ++ .+-.||.||
T Consensus 69 --Hp----------------EvKnvintFt~~aE~~rfs--f~gNv~vG~dvsl----------~e-----L~~~ydavv 113 (468)
T KOG1800|consen 69 --HP----------------EVKNVINTFTKTAEHERFS--FFGNVKVGRDVSL----------KE-----LTDNYDAVV 113 (468)
T ss_pred --Cc----------------chhhHHHHHHHHhhccceE--EEecceecccccH----------HH-----HhhcccEEE
Confidence 00 0034445555666654444 5555554 33322 11 245899999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeeccc----CC-------CCCCCCCCeEEEEccCCCHHHHHHHHhcc---------
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHN----YR-------IPNPFQDQVVILIGHYASGLDIKRDLAGF--------- 219 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~----~~-------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~--------- 219 (354)
+|.|+ ..++.+++||.+. ..++.... |. ...+....+++|||.|.+|+|+|..|...
T Consensus 114 LaYGa-~~dR~L~IPGe~l--~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TD 190 (468)
T KOG1800|consen 114 LAYGA-DGDRRLDIPGEEL--SGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTD 190 (468)
T ss_pred EEecC-CCCcccCCCCccc--ccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccC
Confidence 99997 5788899999863 11111111 11 11233578999999999999999998531
Q ss_pred -------------CCEEEEEEecCC
Q 018550 220 -------------AKEVHIASRSVA 231 (354)
Q Consensus 220 -------------g~~v~~~~r~~~ 231 (354)
-++|+++.|+.+
T Consensus 191 i~~~aL~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 191 IPKLALNLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred CcHHHHhhhhcCCcceEEEEeccCc
Confidence 136899999885
No 95
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.38 E-value=3.6e-13 Score=111.29 Aligned_cols=149 Identities=24% Similarity=0.346 Sum_probs=87.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
||+|||||+||+++|..|++.+.+++++|+.+..+..... .+........
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~---------------------~~~~~~~~~~--------- 50 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC---------------------IPSPLLVEIA--------- 50 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH---------------------HHHHHHHHHH---------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc---------------------cccccccccc---------
Confidence 6999999999999999999999999999886532210000 0000000000
Q ss_pred CCCccCCCCCCCCCCCCCHHHHH--H--HHHHHHHHhCCcceEEeceEEEEEEEeCCCc-----EEEEEeecCCceEEEE
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVL--R--YLQNFAREFGVDQVVRLHTEVLNARLVESNK-----WKVKSRKKDDVVEEET 154 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~--~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-----~~v~~~~g~~~~~~~~ 154 (354)
. ....+. + .+.+.+...+++ +.++.++.+++... +. +.+.... .+...++.
T Consensus 51 ---~-------------~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 110 (201)
T PF07992_consen 51 ---P-------------HRHEFLPARLFKLVDQLKNRGVE--IRLNAKVVSIDPES-KRVVCPAVTIQVVE-TGDGREIK 110 (201)
T ss_dssp ---H-------------HHHHHHHHHHGHHHHHHHHHTHE--EEHHHTEEEEEEST-TEEEETCEEEEEEE-TTTEEEEE
T ss_pred ---c-------------cccccccccccccccccccceEE--Eeeccccccccccc-cccccCcccceeec-cCCceEec
Confidence 0 001111 1 223333456777 77889999998765 42 2332222 22346899
Q ss_pred eCEEEEeeCCCCCcccCCCCCCCC-CCcceeecccCCCCCCCCCCeEEEEc
Q 018550 155 FDAVVVCNGHFSVPRLAQVPGIDS-WPGKQMHSHNYRIPNPFQDQVVILIG 204 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~p~~~g~~~-~~~~~~~~~~~~~~~~~~~~~v~ViG 204 (354)
||+||+||| +.++.|.++|.+. +....+............+++++|||
T Consensus 111 ~d~lviAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 111 YDYLVIATG--SRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG 159 (201)
T ss_dssp EEEEEEEST--EEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred CCeeeecCc--cccceeecCCCccccccccccccccccccccccccccccc
Confidence 999999999 8899999998731 11122222222111222345999999
No 96
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.37 E-value=1.2e-11 Score=97.33 Aligned_cols=143 Identities=23% Similarity=0.369 Sum_probs=84.6
Q ss_pred EEEcCChHHHHHHHHHHHc-----CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccc-ccccc
Q 018550 6 AVIGAGAAGLVVGHELLRE-----GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP-RELMG 79 (354)
Q Consensus 6 vIIG~G~aG~~~a~~l~~~-----g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (354)
+|||+|++|++++..|.++ ..+|+|||+.+ +|....+.+.....-....|...+ .+....+ .....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~-~G~G~~~~~~~~~~~llN~~a~~~-------s~~~~~~~~~f~~ 72 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP-FGAGGAYRPDQPPSHLLNTPADQM-------SLFPDDPGDDFVD 72 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-ccccccCCCCCChHHhhccccccc-------ccccccCCCCHHH
Confidence 6999999999999999988 45999999954 452322221111000000000000 0000000 11111
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
|..-..... ........|++|..+.+|+++..+.. +++. .....+|++|...+ +++.+.+.+|. .+
T Consensus 73 Wl~~~~~~~--~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v-~~~~~~V~~i~~~~-~~~~v~~~~g~----~~ 144 (156)
T PF13454_consen 73 WLRANGADE--AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITV-RHVRAEVVDIRRDD-DGYRVVTADGQ----SI 144 (156)
T ss_pred HHHhcCccc--ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEE-EEEeeEEEEEEEcC-CcEEEEECCCC----EE
Confidence 100000000 01124567999999999998887763 2331 23468999999988 77999998886 88
Q ss_pred EeCEEEEeeCC
Q 018550 154 TFDAVVVCNGH 164 (354)
Q Consensus 154 ~~d~vIlAtG~ 164 (354)
.+|.||+|||+
T Consensus 145 ~~d~VvLa~Gh 155 (156)
T PF13454_consen 145 RADAVVLATGH 155 (156)
T ss_pred EeCEEEECCCC
Confidence 99999999994
No 97
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.36 E-value=1.8e-11 Score=104.26 Aligned_cols=142 Identities=21% Similarity=0.095 Sum_probs=86.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||||+++|+.|++.|++|+|+|+...+|+.+.-.... .+. ..........+ .-.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~-------~~~-~~v~~~~~~~l---------~~~ 87 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGML-------FNK-IVVQEEADEIL---------DEF 87 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccc-------ccc-ccchHHHHHHH---------HHC
Confidence 5799999999999999999999999999999988877654221000 000 00000000000 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEee------cC-CceEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK------KD-DVVEEE 153 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~------g~-~~~~~~ 153 (354)
+.++... .......++.++...+.+.+.+.|++ ++.+++|.++..++++. ..+.... +. .....+
T Consensus 88 gv~~~~~-----~~g~~~vd~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i 160 (257)
T PRK04176 88 GIRYKEV-----EDGLYVADSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTI 160 (257)
T ss_pred CCCceee-----cCcceeccHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEE
Confidence 1111110 00111234578888888888888988 99999999998765322 2222211 10 113589
Q ss_pred EeCEEEEeeCCCCC
Q 018550 154 TFDAVVVCNGHFSV 167 (354)
Q Consensus 154 ~~d~vIlAtG~~s~ 167 (354)
.++.||+|||+++.
T Consensus 161 ~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 161 EAKAVVDATGHDAE 174 (257)
T ss_pred EcCEEEEEeCCCcH
Confidence 99999999997553
No 98
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.35 E-value=8.5e-12 Score=113.82 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=91.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC-CCCCCCCCCCCcccccccccchhcccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
|++||+||||||||++||+.|++.|++|+++|+++.+|.......... .....+.|.... . +........+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~----~---i~~~v~~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDE----E---IERKVTGARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcch----h---hheeeeeeEEE
Confidence 579999999999999999999999999999999887764433211100 000000000000 0 00000000000
Q ss_pred ccCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 80 FQAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
+..-..... ......| ..+..+.+++.+.+.+.|.+ +..++++..+..++ +.+.+....+. .++.+++|
T Consensus 75 ~~~~~~~~~----~~~~~~y~v~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~-~~~~~~~~~~~---~e~~a~~v 144 (396)
T COG0644 75 FPGEKVAIE----VPVGEGYIVDRAKFDKWLAERAEEAGAE--LYPGTRVTGVIRED-DGVVVGVRAGD---DEVRAKVV 144 (396)
T ss_pred ecCCceEEe----cCCCceEEEEhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeC-CcEEEEEEcCC---EEEEcCEE
Confidence 000000000 0001111 34688999999999999999 99999999999987 66666665553 58999999
Q ss_pred EEeeCCC
Q 018550 159 VVCNGHF 165 (354)
Q Consensus 159 IlAtG~~ 165 (354)
|.|+|..
T Consensus 145 I~AdG~~ 151 (396)
T COG0644 145 IDADGVN 151 (396)
T ss_pred EECCCcc
Confidence 9999953
No 99
>PRK06847 hypothetical protein; Provisional
Probab=99.33 E-value=5.2e-11 Score=108.25 Aligned_cols=159 Identities=21% Similarity=0.180 Sum_probs=91.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+++|+|||||++|+++|..|++.|++|+|+|+.+.+. ......++.. ....++.+.. .........+....+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~-~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDEC-LEAGFGFDGVDLFDPDG 82 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHH-HHhCCCccceEEECCCC
Confidence 4789999999999999999999999999999976432 1111110000 0000110000 00000000000000000
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
..+..++.... ............+.++.+.+.+.+.+.+++ +.++++|++++.++ +.+.+.+.++. ++.+|
T Consensus 83 -~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~~~ad 153 (375)
T PRK06847 83 -TLLAELPTPRL-AGDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDD-DGVTVTFSDGT----TGRYD 153 (375)
T ss_pred -CEEEecCcccc-cccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcC-CEEEEEEcCCC----EEEcC
Confidence 00000100000 000001112345678889999988888888 99999999998766 67888877764 78999
Q ss_pred EEEEeeCCCCCccc
Q 018550 157 AVVVCNGHFSVPRL 170 (354)
Q Consensus 157 ~vIlAtG~~s~~~~ 170 (354)
.||+|+|.+|..+.
T Consensus 154 ~vI~AdG~~s~~r~ 167 (375)
T PRK06847 154 LVVGADGLYSKVRS 167 (375)
T ss_pred EEEECcCCCcchhh
Confidence 99999998776653
No 100
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.32 E-value=3.7e-11 Score=110.58 Aligned_cols=154 Identities=21% Similarity=0.187 Sum_probs=86.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC-CCCCCCCCCC---Cccccc-ccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNR---YPVHSS-LYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~-~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~ 76 (354)
++||+||||||||+++|..|+++|++|+|+||.+.++.......... .....+.|.. ...... ..+.+.......
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 48999999999999999999999999999999876653211110000 0000000000 000000 000000000000
Q ss_pred cccccCCCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 77 LMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
.. .+.+..... ...... ....+.++.+++.+.+.+.|++ +..+++|+++..++ +.+.....++. ++.+
T Consensus 85 ~~---~~~~~~~~~-~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-g~v~~v~~~g~----~i~A 153 (428)
T PRK10157 85 AM---TMDYCNGDE-TSPSQRSYSVLRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRD-GKVVGVEADGD----VIEA 153 (428)
T ss_pred ce---eeccccccc-cCCCCCceeeEHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeC-CEEEEEEcCCc----EEEC
Confidence 00 001110000 000111 1245788999999999888998 99999999998765 55543333332 7899
Q ss_pred CEEEEeeCCCC
Q 018550 156 DAVVVCNGHFS 166 (354)
Q Consensus 156 d~vIlAtG~~s 166 (354)
+.||+|+|.++
T Consensus 154 ~~VI~A~G~~s 164 (428)
T PRK10157 154 KTVILADGVNS 164 (428)
T ss_pred CEEEEEeCCCH
Confidence 99999999644
No 101
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.32 E-value=2.5e-11 Score=106.50 Aligned_cols=146 Identities=23% Similarity=0.229 Sum_probs=86.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC---CCCCCCCCCCCcccccccccchhcccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+||+|||||++|+++|..|++.|++|+|+|+.+.++..+.-. .+. ...+..... ..... +........... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~--~~~~~~~~~~~~-~ 75 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGG-ALSPRVLEELDLPLE-LIVNL--VRGARFFSPNGD-S 75 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccC-ccCHhHHHHhcCCch-hhhhh--eeeEEEEcCCCc-E
Confidence 589999999999999999999999999999987654321110 000 000000000 00000 000000000000 0
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
...+.. .......++.++.+.+.+.+.+.+++ +.++++++++..++ +.+.+...++. .++++|+||
T Consensus 76 -~~~~~~-------~~~~~~i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~-~~~~~~~~~~~---~~~~a~~vv 141 (295)
T TIGR02032 76 -VEIPIE-------TELAYVIDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHD-DRVVVIVRGGE---GTVTAKIVI 141 (295)
T ss_pred -EEeccC-------CCcEEEEEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeC-CEEEEEEcCcc---EEEEeCEEE
Confidence 000000 01112245688999999999888888 89999999998876 66666554432 478999999
Q ss_pred EeeCCCCC
Q 018550 160 VCNGHFSV 167 (354)
Q Consensus 160 lAtG~~s~ 167 (354)
+|+|.++.
T Consensus 142 ~a~G~~s~ 149 (295)
T TIGR02032 142 GADGSRSI 149 (295)
T ss_pred ECCCcchH
Confidence 99997553
No 102
>PRK08244 hypothetical protein; Provisional
Probab=99.28 E-value=6.6e-11 Score=111.33 Aligned_cols=152 Identities=25% Similarity=0.257 Sum_probs=89.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhcc-c
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-P 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~ 74 (354)
|+++|+||||||+|+++|..|+++|++|+|+|+.+.+. ......++.. ...+|+ ++.+.... +
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl-----------~~~l~~~~~~ 69 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGL-----------LERFLEKGRK 69 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCc-----------HHHHHhhccc
Confidence 57899999999999999999999999999999976431 1111100000 011111 11111000 0
Q ss_pred ccccccc----CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 75 RELMGFQ----AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 75 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.....+. .+.+... ...........+..+.+.+.+.+.+.+++ ++++++++++..++ +..++++.+.++ .
T Consensus 70 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~ 143 (493)
T PRK08244 70 LPSGHFAGLDTRLDFSAL--DTSSNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDG-DGVEVVVRGPDG-L 143 (493)
T ss_pred ccceEEecccccCCcccC--CCCCCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcC-CeEEEEEEeCCc-c
Confidence 0000000 0111000 00000011134567888888888888888 99999999998876 667777654322 2
Q ss_pred EEEEeCEEEEeeCCCCCcc
Q 018550 151 EEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~ 169 (354)
.++++|+||.|+|.+|..+
T Consensus 144 ~~i~a~~vVgADG~~S~vR 162 (493)
T PRK08244 144 RTLTSSYVVGADGAGSIVR 162 (493)
T ss_pred EEEEeCEEEECCCCChHHH
Confidence 4789999999999776544
No 103
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.28 E-value=1.6e-11 Score=110.69 Aligned_cols=157 Identities=27% Similarity=0.330 Sum_probs=88.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhcc-cccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-PRELMG 79 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 79 (354)
++|+|||||++|+++|..|+++|++|+|||+.+.+..... . ..+.|.. .+..-.+++.+.... +.....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~---~-----~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 73 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGR---G-----IGLSPNSLRILQRLGLLDEILARGSPHEVMR 73 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSS---S-----EEEEHHHHHHHHHTTEHHHHHHHSEEECEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccccccc---c-----cccccccccccccccchhhhhhhccccccee
Confidence 6899999999999999999999999999999765421000 0 0000000 000000111111110 000000
Q ss_pred --c-cC---C------CCCccCC--CCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee
Q 018550 80 --F-QA---Y------PFVARNY--EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK 145 (354)
Q Consensus 80 --~-~~---~------~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~ 145 (354)
+ .. . +...... ...........+..+.+.|.+.+.+.++. +.++++++++..+. +...+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~-~~~~~~~~~ 150 (356)
T PF01494_consen 74 IFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVD--IRFGTRVVSIEQDD-DGVTVVVRD 150 (356)
T ss_dssp EEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEET-TEEEEEEEE
T ss_pred eEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhh--heeeeecccccccc-ccccccccc
Confidence 0 00 0 0000000 00001111234678999999999998987 99999999999887 666666666
Q ss_pred c-CCceEEEEeCEEEEeeCCCCCccc
Q 018550 146 K-DDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 146 g-~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
+ +++.+++++|.||.|+|.+|.-+.
T Consensus 151 ~~~g~~~~i~adlvVgADG~~S~vR~ 176 (356)
T PF01494_consen 151 GEDGEEETIEADLVVGADGAHSKVRK 176 (356)
T ss_dssp TCTCEEEEEEESEEEE-SGTT-HHHH
T ss_pred ccCCceeEEEEeeeecccCcccchhh
Confidence 5 344568999999999998776554
No 104
>PRK10015 oxidoreductase; Provisional
Probab=99.27 E-value=7.5e-11 Score=108.46 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=84.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC-CCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++||+||||||||+++|+.|++.|++|+|+|+.+.+|.......... .....+.|.. .... .+........+.+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~--~~~~---~i~~~~~~~~~~~ 79 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGF--AASA---PVERKVTREKISF 79 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccc--cccC---CccccccceeEEE
Confidence 37999999999999999999999999999999876543211100000 0000000100 0000 0000000000000
Q ss_pred c------CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 81 Q------AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 81 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
. ..++................+..+.+++.+.+.+.|++ ++.+++|+++..++ +.+.....++ .++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~~v~~~~----~~i~ 152 (429)
T PRK10015 80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREG-NKVTGVQAGD----DILE 152 (429)
T ss_pred EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeC-CEEEEEEeCC----eEEE
Confidence 0 00010000000000011235678888999989888988 89999999998765 4444332222 3799
Q ss_pred eCEEEEeeCCCCC
Q 018550 155 FDAVVVCNGHFSV 167 (354)
Q Consensus 155 ~d~vIlAtG~~s~ 167 (354)
++.||+|+|..+.
T Consensus 153 A~~VI~AdG~~s~ 165 (429)
T PRK10015 153 ANVVILADGVNSM 165 (429)
T ss_pred CCEEEEccCcchh
Confidence 9999999996443
No 105
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.27 E-value=5.7e-11 Score=112.79 Aligned_cols=162 Identities=20% Similarity=0.118 Sum_probs=90.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee---ecCCCCC--CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW---IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
.++|+||||||+|+++|..|+++|++|+|+|+.+.+.... ...++.. ....++...- ......+..+......+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l-~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEV-LPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHH-HhhcccCCceEEEcCCC
Confidence 4799999999999999999999999999999986543211 1100000 0001111000 00000000000000000
Q ss_pred cccccCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 77 LMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
..+..++.... ...... .....+..+.+.+.+.+.++ +++ ++++++|++++.++ +.++++..+.+++..+++
T Consensus 89 -~~~~~~~~~~~--~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~-~~v~v~~~~~~G~~~~i~ 162 (538)
T PRK06183 89 -RCLAEIARPST--GEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDD-DGVTVTLTDADGQRETVR 162 (538)
T ss_pred -CEEEEEcCCCC--CCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcC-CeEEEEEEcCCCCEEEEE
Confidence 00001110000 000000 11223456777888877765 777 99999999999887 778888765333346899
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|+||.|+|.+|..+.
T Consensus 163 ad~vVgADG~~S~vR~ 178 (538)
T PRK06183 163 ARYVVGCDGANSFVRR 178 (538)
T ss_pred EEEEEecCCCchhHHH
Confidence 9999999998776553
No 106
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.27 E-value=2.5e-11 Score=111.38 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=89.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchh--ccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRV--NLPRE 76 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~ 76 (354)
|.++|+|||||++|+++|..|++.|++|+|+|+.+...............-..+.|.. .+..-..++.+.. ..+..
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 5689999999999999999999999999999997521111000000000000111110 0000111222111 00100
Q ss_pred cccccC------CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 77 LMGFQA------YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 77 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.+.+.+ ..+...... .........+..+.+.+.+.+.+.+++ +++++++++++.++ +.+.+++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~--- 153 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVH-AEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSG-DDWLLTLADGR--- 153 (405)
T ss_pred eEEEEcCCCCceEEecccccC-CCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcC-CeEEEEECCCC---
Confidence 000000 000000000 000001123456777777777667777 88999999998876 67888887764
Q ss_pred EEEEeCEEEEeeCCCCCccc
Q 018550 151 EEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.+|+||.|+|.+|..+.
T Consensus 154 -~~~a~~vVgAdG~~S~vR~ 172 (405)
T PRK05714 154 -QLRAPLVVAADGANSAVRR 172 (405)
T ss_pred -EEEeCEEEEecCCCchhHH
Confidence 7999999999998876654
No 107
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.26 E-value=8.1e-11 Score=99.91 Aligned_cols=141 Identities=18% Similarity=0.092 Sum_probs=85.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||+|+++|+.|+++|.+|+|+||+..+|+....... ..+.. .... ....+ ....
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~-------~~~~~-~~~~-~~~~~--------l~~~ 83 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGM-------LFSKI-VVEK-PAHEI--------LDEF 83 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCc-------ceecc-cccc-hHHHH--------HHHC
Confidence 479999999999999999999999999999999887654321100 00000 0000 00000 0001
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC--cEEEEEee------cC-CceEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN--KWKVKSRK------KD-DVVEE 152 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~--~~~v~~~~------g~-~~~~~ 152 (354)
+.++... .......++.++...+.+.+.+.+++ +..++++.++..+++. ...+.+.. +. .....
T Consensus 84 gi~~~~~-----~~g~~~~~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~ 156 (254)
T TIGR00292 84 GIRYEDE-----GDGYVVADSAEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT 156 (254)
T ss_pred CCCeeec-----cCceEEeeHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE
Confidence 2222110 00111234478888888888888988 9999999999876621 22233321 10 01358
Q ss_pred EEeCEEEEeeCCCC
Q 018550 153 ETFDAVVVCNGHFS 166 (354)
Q Consensus 153 ~~~d~vIlAtG~~s 166 (354)
+.++.||.|||+.+
T Consensus 157 i~Ak~VVdATG~~a 170 (254)
T TIGR00292 157 QRSRVVVDATGHDA 170 (254)
T ss_pred EEcCEEEEeecCCc
Confidence 99999999999643
No 108
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.26 E-value=8.2e-11 Score=107.27 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=86.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC-CCccceeecCCCCC---CCCCCCCCCCCcccccccccchhccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~-~~~gg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
+||+||||||||+++|+.|++.|++|+|+|+. +.. ..|.. .+. ...+++ |... .. ..+..+....+....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~-~~cg~--~i~~~~l~~l~i-~~~~-~~-~~~~~~~~~~~~~~~ 74 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNI-KPCGG--AIPPCLIEEFDI-PDSL-ID-RRVTQMRMISPSRVP 74 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCc-CcCcC--CcCHhhhhhcCC-chHH-Hh-hhcceeEEEcCCCce
Confidence 68999999999999999999999999999996 211 00100 000 001111 0000 00 001111111111100
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec----CCceEEEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK----DDVVEEET 154 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g----~~~~~~~~ 154 (354)
....++.. ........+..+.+++.+.+.+.|++ ++. .+++++..++ +.+.++..++ .++..++.
T Consensus 75 ~~~~~~~~-------~~~~~~~~r~~fd~~L~~~a~~~G~~--v~~-~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~~i~ 143 (388)
T TIGR02023 75 IKVTIPSE-------DGYVGMVRREVFDSYLRERAQKAGAE--LIH-GLFLKLERDR-DGVTLTYRTPKKGAGGEKGSVE 143 (388)
T ss_pred eeeccCCC-------CCceEeeeHHHHHHHHHHHHHhCCCE--EEe-eEEEEEEEcC-CeEEEEEEeccccCCCcceEEE
Confidence 00000000 00111257789999999999888988 654 5688988776 7788877642 12235799
Q ss_pred eCEEEEeeCCCCCcc
Q 018550 155 FDAVVVCNGHFSVPR 169 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~ 169 (354)
+|+||.|+|.+|..+
T Consensus 144 a~~VI~AdG~~S~v~ 158 (388)
T TIGR02023 144 ADVVIGADGANSPVA 158 (388)
T ss_pred eCEEEECCCCCcHHH
Confidence 999999999766544
No 109
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.26 E-value=3.4e-11 Score=109.60 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=91.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC-CCc---cceeecCCCCC--CCCCCCCCCCCcccccccccchhccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV---GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~-~~~---gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (354)
+.++|+||||||+|+++|..|++.|++|+|+|+. +.+ |......++.. ....|+.+.-.-.....+........
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~ 80 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG 80 (387)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecC
Confidence 4689999999999999999999999999999997 221 11111110000 11122210000000000000000000
Q ss_pred cccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEe-ecCCceEE
Q 018550 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEE 152 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~~~ 152 (354)
.. ....++.... . .........+..+...+.+.+.+.+ ++ +.++++|+.++.++ +..+++.. +|. +
T Consensus 81 ~~--~~~~~~~~~~--~-~~~~~~~~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~-~~v~v~l~~dG~----~ 148 (387)
T COG0654 81 GR--RLLIFDAAEL--G-RGALGYVVPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDG-DGVTVTLSFDGE----T 148 (387)
T ss_pred Cc--eeEEeccccc--C-CCcceEEeEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcC-CceEEEEcCCCc----E
Confidence 00 0000000000 0 0011122345888899999888765 77 99999999999987 67778887 654 8
Q ss_pred EEeCEEEEeeCCCCCccc
Q 018550 153 ETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~ 170 (354)
+.+|+||.|+|.+|.-|.
T Consensus 149 ~~a~llVgADG~~S~vR~ 166 (387)
T COG0654 149 LDADLLVGADGANSAVRR 166 (387)
T ss_pred EecCEEEECCCCchHHHH
Confidence 999999999998776554
No 110
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.26 E-value=1.1e-10 Score=106.52 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=83.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc-
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ- 81 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 81 (354)
++|+||||||||+++|..|++.|++|+|+|+....+..|.- +.|...+..-.....+..+.......+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~----------~i~~~~l~~~g~~~~~~~~~i~~~~~~~p 70 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGG----------AIPLCMVDEFALPRDIIDRRVTKMKMISP 70 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccc----------cccHhhHhhccCchhHHHhhhceeEEecC
Confidence 58999999999999999999999999999997554333321 1111100000000011100000000000
Q ss_pred -CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe--CCCcEEEEEeecC-----CceEEE
Q 018550 82 -AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKD-----DVVEEE 153 (354)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~--~~~~~~v~~~~g~-----~~~~~~ 153 (354)
....................+..+.+++.+.+.+.|++ +..+ ++.++... .++.+.++..... ++..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~--v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i 147 (398)
T TIGR02028 71 SNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGAT--LING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTL 147 (398)
T ss_pred CceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcE--EEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEE
Confidence 00000000000000111256788999999999988998 7665 57776532 2255666643211 223579
Q ss_pred EeCEEEEeeCCCCCc
Q 018550 154 TFDAVVVCNGHFSVP 168 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~ 168 (354)
.+++||.|+|..|..
T Consensus 148 ~a~~VIgADG~~S~v 162 (398)
T TIGR02028 148 EVDAVIGADGANSRV 162 (398)
T ss_pred EeCEEEECCCcchHH
Confidence 999999999965543
No 111
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.26 E-value=4.8e-11 Score=109.28 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=88.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc---eeecCCCCC--CCCCCCCCCCCccccc-ccccchhcccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSS-LYKSLRVNLPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 75 (354)
.++|+|||||++|+++|..|++.|++|+|+|+.+.++. .....++.. ...+++.+. +.... ....+......
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~--~~~~~~~~~~~~~~~~~ 81 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEA--ARQRAVFTDHLTMMDAV 81 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHH--HHhhccCCcceEEEeCC
Confidence 46999999999999999999999999999999865431 111111000 001111100 00000 00000000000
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
....+..++.................+.++.+.+.+.+.+.+ ++ ++++++++++..++ +.+.+++.++. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~g~----~~~ 154 (396)
T PRK08163 82 DAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDG-DGVTVFDQQGN----RWT 154 (396)
T ss_pred CCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCC-CceEEEEcCCC----EEe
Confidence 000000000000000000000012356778888888776654 66 88999999998766 67888777664 789
Q ss_pred eCEEEEeeCCCCCcccC
Q 018550 155 FDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~p 171 (354)
+|.||.|+|.+|..+..
T Consensus 155 ad~vV~AdG~~S~~r~~ 171 (396)
T PRK08163 155 GDALIGCDGVKSVVRQS 171 (396)
T ss_pred cCEEEECCCcChHHHhh
Confidence 99999999987766543
No 112
>PRK06834 hypothetical protein; Provisional
Probab=99.25 E-value=8.6e-11 Score=109.72 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=88.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhcc-cc--c
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-PR--E 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~--~ 76 (354)
.++|+||||||+|+++|..|+++|++|+|+|+.+.....-... .++.+.. .+..-.+++.+.... +. .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra-------~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~ 75 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRA-------GGLHARTLEVLDQRGIADRFLAQGQVAQVT 75 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcce-------eeECHHHHHHHHHcCcHHHHHhcCCccccc
Confidence 4799999999999999999999999999999976421000000 0001000 000001111111100 00 0
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
.+....+..... ..............+.+.+.+.+.+.+++ +++++++++++.++ +.+.+++.++. ++.+|
T Consensus 76 ~~~~~~~~~~~~--~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~-~~v~v~~~~g~----~i~a~ 146 (488)
T PRK06834 76 GFAATRLDISDF--PTRHNYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDD-TGVDVELSDGR----TLRAQ 146 (488)
T ss_pred eeeeEecccccC--CCCCCccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CeEEEEECCCC----EEEeC
Confidence 000000110000 00000011123467778888888888888 99999999999877 67777776553 79999
Q ss_pred EEEEeeCCCCCcc
Q 018550 157 AVVVCNGHFSVPR 169 (354)
Q Consensus 157 ~vIlAtG~~s~~~ 169 (354)
+||.|+|.+|..+
T Consensus 147 ~vVgADG~~S~vR 159 (488)
T PRK06834 147 YLVGCDGGRSLVR 159 (488)
T ss_pred EEEEecCCCCCcH
Confidence 9999999877544
No 113
>PRK06184 hypothetical protein; Provisional
Probab=99.24 E-value=6.2e-11 Score=111.70 Aligned_cols=164 Identities=20% Similarity=0.155 Sum_probs=87.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec---CCCCC--CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY---TSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+.+|+||||||+|+++|..|+++|++|+|+|+.+.+...-.- .++.. ...+++...- ......+..........
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l-~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRV-VAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHH-HhcCccccceeEEeCCc
Confidence 478999999999999999999999999999997654211000 00000 0011111000 00000000000000000
Q ss_pred cccccCCC-CCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 77 LMGFQAYP-FVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
...-..+. .................+..+.+.+.+.+.+.+++ +++++++++++.++ +.++++..+..+ ..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~~~~-~~~i~a 157 (502)
T PRK06184 82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHR--VEFGCELVGFEQDA-DGVTARVAGPAG-EETVRA 157 (502)
T ss_pred eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcC-CcEEEEEEeCCC-eEEEEe
Confidence 00000000 00000000000011123466777888888887887 99999999999876 667777643211 258999
Q ss_pred CEEEEeeCCCCCccc
Q 018550 156 DAVVVCNGHFSVPRL 170 (354)
Q Consensus 156 d~vIlAtG~~s~~~~ 170 (354)
|+||.|+|.+|.-+.
T Consensus 158 ~~vVgADG~~S~vR~ 172 (502)
T PRK06184 158 RYLVGADGGRSFVRK 172 (502)
T ss_pred CEEEECCCCchHHHH
Confidence 999999998775443
No 114
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.24 E-value=5.3e-11 Score=109.69 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=85.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc-----ceeecCCCCC--CCCCCCCCCCCcccccccccchhccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g-----g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (354)
.++|+|||||++|+++|..|++.|++|+|+|+.+.+. ......+... ...+|+..+-. -.......+....
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~-~~~~~~~~~~~~~- 95 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKIL-PQIGKFRQIRLSD- 95 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhH-hhcCCccEEEEEe-
Confidence 4789999999999999999999999999999976542 1111111000 01112111000 0000000000000
Q ss_pred cccccccCCCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 75 RELMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
........+..... . .... ....+..+.+.+.+.+.+. +++ +++++++++++.++ +.+.+++.++. ...+
T Consensus 96 ~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~-~~~~v~~~~~~-~~~~ 167 (415)
T PRK07364 96 ADYPGVVKFQPTDL--G--TEALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQ-DAATVTLEIEG-KQQT 167 (415)
T ss_pred CCCCceeeeccccC--C--CCccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeeEEEEccCC-cceE
Confidence 00000000100000 0 0000 0112245667777766654 576 88899999998776 67778776432 1247
Q ss_pred EEeCEEEEeeCCCCCccc
Q 018550 153 ETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~ 170 (354)
+++|+||.|+|.+|.-+.
T Consensus 168 i~adlvIgADG~~S~vR~ 185 (415)
T PRK07364 168 LQSKLVVAADGARSPIRQ 185 (415)
T ss_pred EeeeEEEEeCCCCchhHH
Confidence 999999999998776543
No 115
>PRK08013 oxidoreductase; Provisional
Probab=99.24 E-value=6.5e-11 Score=108.37 Aligned_cols=159 Identities=16% Similarity=0.061 Sum_probs=89.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhc--ccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN--LPREL 77 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~ 77 (354)
.++|+||||||+|+++|..|++.|++|+|+|+.+.+.......... ...++.|.. .+..-..++.+... .+...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~--r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPAL--RVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCc--eeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 4799999999999999999999999999999976532100000000 000011100 00000111111100 00000
Q ss_pred cccc------CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 78 MGFQ------AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
+.+. ...+...... .........+..+.+.+.+.+... +++ +++++++++++.++ +.+.++..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~--- 153 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMG-YSHLGHIIENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGE-NEAFLTLKDGS--- 153 (400)
T ss_pred EEEEeCCCCceEEEcccccC-CCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeEEEEEcCCC---
Confidence 0000 0000000000 000001234577888888877765 677 89999999998876 67778877664
Q ss_pred EEEEeCEEEEeeCCCCCccc
Q 018550 151 EEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.+|+||.|+|.+|.-+.
T Consensus 154 -~i~a~lvVgADG~~S~vR~ 172 (400)
T PRK08013 154 -MLTARLVVGADGANSWLRN 172 (400)
T ss_pred -EEEeeEEEEeCCCCcHHHH
Confidence 8999999999998776654
No 116
>PRK07045 putative monooxygenase; Reviewed
Probab=99.23 E-value=4.4e-11 Score=109.17 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=86.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+++|+||||||+|+++|..|++.|++|+|+|+.+.+. +.....++.. ....++...-.-........+.......
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 3689999999999999999999999999999987541 1100111000 0111111000000000000000000000
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCC-cEEEEEeecCCceEEEE
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEET 154 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~ 154 (354)
. ...+++... . .........+.++.+.+.+.+.. .+++ ++++++++++..++++ .+.++..++. ++.
T Consensus 85 ~--~~~~~~~~~--~-~~g~~~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g~----~~~ 153 (388)
T PRK07045 85 L--IASLDYRSA--S-ALGYFILIPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGTVTSVTLSDGE----RVA 153 (388)
T ss_pred E--EEEecCCcc--c-cCCceEEccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCcEEEEEeCCCC----EEE
Confidence 0 000111100 0 00001113457788877777654 4677 9999999999986633 2456766654 789
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|.||.|+|.+|..+.
T Consensus 154 ~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 154 PTVLVGADGARSMIRD 169 (388)
T ss_pred CCEEEECCCCChHHHH
Confidence 9999999998775554
No 117
>PLN02463 lycopene beta cyclase
Probab=99.23 E-value=8.9e-11 Score=107.76 Aligned_cols=143 Identities=15% Similarity=0.101 Sum_probs=85.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||||+++|..|++.|++|+|+|+.+.. .|..+.+ .- ...+......+.+...-+.....+.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~--~~p~~~g-------~w-~~~l~~lgl~~~l~~~w~~~~v~~~ 97 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS--IWPNNYG-------VW-VDEFEALGLLDCLDTTWPGAVVYID 97 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccc--hhccccc-------hH-HHHHHHCCcHHHHHhhCCCcEEEEe
Confidence 369999999999999999999999999999986431 1111100 00 0000000000000000000000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+. .. ..........++.++.+.+.+.+...+++ +. ..+|++++..+ +.+.|++.+|. ++.++.||.|
T Consensus 98 ~~-~~----~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~--~~-~~~V~~I~~~~-~~~~V~~~dG~----~i~A~lVI~A 164 (447)
T PLN02463 98 DG-KK----KDLDRPYGRVNRKKLKSKMLERCIANGVQ--FH-QAKVKKVVHEE-SKSLVVCDDGV----KIQASLVLDA 164 (447)
T ss_pred CC-CC----ccccCcceeEEHHHHHHHHHHHHhhcCCE--EE-eeEEEEEEEcC-CeEEEEECCCC----EEEcCEEEEC
Confidence 00 00 00011122346788999998888888887 54 57999999876 77888888764 8999999999
Q ss_pred eCCCCC
Q 018550 162 NGHFSV 167 (354)
Q Consensus 162 tG~~s~ 167 (354)
+|..+.
T Consensus 165 dG~~s~ 170 (447)
T PLN02463 165 TGFSRC 170 (447)
T ss_pred cCCCcC
Confidence 996543
No 118
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.23 E-value=1.7e-10 Score=106.31 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=84.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC---CCCCCCCCCCCcccccccccchhcccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
|++||+||||||||+++|..|++.|++|+|+|+.......|-- .++ ...++. +... .. .....+....+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg--~i~~~~l~~lgl-~~~~-~~-~~i~~~~~~~p~~~ 112 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGG--AIPLCMVGEFDL-PLDI-ID-RKVTKMKMISPSNV 112 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccc--cccHhHHhhhcC-cHHH-HH-HHhhhheEecCCce
Confidence 4689999999999999999999999999999996432111110 000 000010 0000 00 00000000001000
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC--CCcEEEEEeec-----CCce
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-----DDVV 150 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g-----~~~~ 150 (354)
. ..++.... .........+..+.+++.+.+.+.|.+ ++. .++.++.... ++.+.++..+. .++.
T Consensus 113 -~-v~~~~~~~----~~~~~~~v~R~~~d~~L~~~A~~~Ga~--~~~-~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~ 183 (450)
T PLN00093 113 -A-VDIGKTLK----PHEYIGMVRREVLDSFLRERAQSNGAT--LIN-GLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTP 183 (450)
T ss_pred -E-EEecccCC----CCCeEEEecHHHHHHHHHHHHHHCCCE--EEe-ceEEEEEeccCCCCcEEEEEEeccccccCCCc
Confidence 0 00000000 000001257789999999999888988 655 4677776432 24566766442 1223
Q ss_pred EEEEeCEEEEeeCCCCCcc
Q 018550 151 EEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~ 169 (354)
.++.+|.||.|+|.+|.-+
T Consensus 184 ~~v~a~~VIgADG~~S~vr 202 (450)
T PLN00093 184 KTLEVDAVIGADGANSRVA 202 (450)
T ss_pred cEEEeCEEEEcCCcchHHH
Confidence 5799999999999766443
No 119
>PRK07236 hypothetical protein; Provisional
Probab=99.23 E-value=1.2e-10 Score=106.16 Aligned_cols=148 Identities=18% Similarity=0.098 Sum_probs=82.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc----cceeecCCCCC--CCCCCCCCCCCcccccccccchhcccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~----gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (354)
.++|+|||||++|+++|..|++.|++|+|+|+.+.. |+.....++.. ...+++.+.... .............
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~--~~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADI--GVPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccc--ccCccceEEEeCC
Confidence 478999999999999999999999999999997532 11111111000 011111111000 0000000000000
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
+ ..+...+ .......+..+.+.+.+.+ .+.. ++++++|++++.++ +.++++..+|. ++.+
T Consensus 84 g-~~~~~~~----------~~~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a 143 (386)
T PRK07236 84 G-RVVQRRP----------MPQTQTSWNVLYRALRAAF--PAER--YHLGETLVGFEQDG-DRVTARFADGR----RETA 143 (386)
T ss_pred C-CEeeccC----------CCccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecC-CeEEEEECCCC----EEEe
Confidence 0 0000000 0011123444555444322 1234 89999999999876 77888888775 8899
Q ss_pred CEEEEeeCCCCCcccC
Q 018550 156 DAVVVCNGHFSVPRLA 171 (354)
Q Consensus 156 d~vIlAtG~~s~~~~p 171 (354)
|.||.|+|.+|..+..
T Consensus 144 d~vIgADG~~S~vR~~ 159 (386)
T PRK07236 144 DLLVGADGGRSTVRAQ 159 (386)
T ss_pred CEEEECCCCCchHHHH
Confidence 9999999987776643
No 120
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.22 E-value=5.3e-11 Score=108.78 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=85.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhc--cc-cc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN--LP-RE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~-~~ 76 (354)
.+||+|||||++|+++|..|++.|++|+|+|+.+...-.-...+... -..+.|.. .+..-..++.+... .+ ..
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r--~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVR--ISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCce--EEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 47999999999999999999999999999998642110000000000 00000000 00000011111000 00 00
Q ss_pred cc--cccCC--CCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 77 LM--GFQAY--PFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 77 ~~--~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.. .+... .+..... ..... ....+..+.+.+.+.+... +++ +.++++++++..++ +.+.+.+.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~--~~~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g~--- 154 (391)
T PRK08020 83 LETWEWETAHVVFDAAEL--KLPELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDD-DGWELTLADGE--- 154 (391)
T ss_pred EEEEeCCCCeEEeccccc--CCCccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcC-CeEEEEECCCC---
Confidence 00 00000 0000000 00000 0134467777887777665 777 88899999998776 67888877654
Q ss_pred EEEEeCEEEEeeCCCCCcc
Q 018550 151 EEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~ 169 (354)
++.+|.||.|+|.+|.-+
T Consensus 155 -~~~a~~vI~AdG~~S~vR 172 (391)
T PRK08020 155 -EIQAKLVIGADGANSQVR 172 (391)
T ss_pred -EEEeCEEEEeCCCCchhH
Confidence 799999999999877543
No 121
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.21 E-value=8.7e-11 Score=107.59 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=90.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhcc-c
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-P 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~ 74 (354)
|.++|+|||||++|+++|..|+++|++|+|+|+.+.+. ......++.. ...+++ ++.+.... +
T Consensus 1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl-----------~~~l~~~~~~ 69 (400)
T PRK06475 1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGV-----------ADRLSGTGVT 69 (400)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCC-----------hHHHhhcccC
Confidence 56899999999999999999999999999999976542 2211111100 011111 11110000 0
Q ss_pred cccccccC-CCCCc-c--CC---CCCCCCCC--CCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEe
Q 018550 75 RELMGFQA-YPFVA-R--NY---EGSVDLRR--YPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSR 144 (354)
Q Consensus 75 ~~~~~~~~-~~~~~-~--~~---~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~ 144 (354)
...+.+.+ ..... . .. ........ ...+.++.+.+.+.+... +++ ++++++|+++..++ +.+.++..
T Consensus 70 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~-~~v~v~~~ 146 (400)
T PRK06475 70 PKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTG-NSITATII 146 (400)
T ss_pred cceEEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCC-CceEEEEE
Confidence 00000000 00000 0 00 00000111 135678888888877653 677 89999999998766 67777765
Q ss_pred ecCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 145 KKDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 145 ~g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
++.+ ...+.+|.||.|+|.+|..|..
T Consensus 147 ~~~~-~~~~~adlvIgADG~~S~vR~~ 172 (400)
T PRK06475 147 RTNS-VETVSAAYLIACDGVWSMLRAK 172 (400)
T ss_pred eCCC-CcEEecCEEEECCCccHhHHhh
Confidence 4321 1378999999999988766654
No 122
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.21 E-value=9.2e-11 Score=106.94 Aligned_cols=150 Identities=25% Similarity=0.379 Sum_probs=90.1
Q ss_pred EEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC--CCCCCCC-Ccc---cccccccchhcccccccc
Q 018550 6 AVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP--LGVDPNR-YPV---HSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 6 vIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~--~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~ 79 (354)
+|||||++|+++|..|+++|.+|+|+|+++.+|+.+...++...+. ....+.. ... ....+..+......+...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999988887665443222100 0000000 000 000111111111111111
Q ss_pred c-c--CCCCCccCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 80 F-Q--AYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 80 ~-~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
+ . +.++... .....|| ....+.+.+.+.+++.+++ ++++++|+++...+ +.+.+.+. + ..+
T Consensus 81 ~~~~~Gv~~~~~-----~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~-~~~~v~~~-~----~~i 147 (400)
T TIGR00275 81 FFESLGLELKVE-----EDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDD-NGFGVETS-G----GEY 147 (400)
T ss_pred HHHHcCCeeEEe-----cCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecC-CeEEEEEC-C----cEE
Confidence 1 0 1111110 1122333 2477888888888888888 99999999998765 66777663 2 278
Q ss_pred EeCEEEEeeCCCCCc
Q 018550 154 TFDAVVVCNGHFSVP 168 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~ 168 (354)
.+|.||+|+|.++.|
T Consensus 148 ~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 148 EADKVILATGGLSYP 162 (400)
T ss_pred EcCEEEECCCCcccC
Confidence 999999999976654
No 123
>PRK07588 hypothetical protein; Provisional
Probab=99.21 E-value=1.4e-10 Score=105.94 Aligned_cols=158 Identities=15% Similarity=0.085 Sum_probs=86.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhcccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
++|+|||||++|+++|..|+++|++|+|+|+.+.+. ..+..++... ...+++...- ......+..+......+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l-~~~~~~~~~~~~~~~~g- 78 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQL-REAGYQIEHVRSVDPTG- 78 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHH-HhccCCccceEEEcCCC-
Confidence 489999999999999999999999999999976541 1121111100 0001110000 00000000000000000
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
..+..++..... ...........+.++.+.+.+.... +++ ++++++|++++.++ +.+++++.+|. ++.+|.
T Consensus 79 ~~~~~~~~~~~~-~~~g~~~~~i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~d~ 149 (391)
T PRK07588 79 RRKADLNVDSFR-RMVGDDFTSLPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHR-DGVRVTFERGT----PRDFDL 149 (391)
T ss_pred CEEEEecHHHcc-ccCCCceEEEEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECC-CeEEEEECCCC----EEEeCE
Confidence 000001100000 0000000123456677766654432 566 99999999999876 77888888765 679999
Q ss_pred EEEeeCCCCCcccC
Q 018550 158 VVVCNGHFSVPRLA 171 (354)
Q Consensus 158 vIlAtG~~s~~~~p 171 (354)
||.|+|.+|.-+..
T Consensus 150 vIgADG~~S~vR~~ 163 (391)
T PRK07588 150 VIGADGLHSHVRRL 163 (391)
T ss_pred EEECCCCCccchhh
Confidence 99999987776653
No 124
>PRK11445 putative oxidoreductase; Provisional
Probab=99.21 E-value=1.5e-10 Score=104.02 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC-CCCC--------CCCCCCC-CCCCcccccccccchh
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT-SETE--------SDPLGVD-PNRYPVHSSLYKSLRV 71 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~ 71 (354)
++||+||||||||+++|..|++. ++|+++|+.+..+..-... .+.. ...++.. +........
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~------- 72 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ------- 72 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-------
Confidence 47999999999999999999999 9999999976432000000 0000 0001110 000000000
Q ss_pred ccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe-ecCCce
Q 018550 72 NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVV 150 (354)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~ 150 (354)
.+......+...............++.++.+.+.+.. ..+++ +.+++.+.++..++ +.+.++.. ++. .
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~~g~--~ 141 (351)
T PRK11445 73 -----IFAVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWRED-DGYHVIFRADGW--E 141 (351)
T ss_pred -----cceeeEecccccchhhcCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcC-CEEEEEEecCCc--E
Confidence 0000000010000000000111256688888887753 45777 89999999998876 77888763 332 2
Q ss_pred EEEEeCEEEEeeCCCCCcc
Q 018550 151 EEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~ 169 (354)
.++.+|+||.|+|..|..+
T Consensus 142 ~~i~a~~vV~AdG~~S~vr 160 (351)
T PRK11445 142 QHITARYLVGADGANSMVR 160 (351)
T ss_pred EEEEeCEEEECCCCCcHHh
Confidence 4789999999999766544
No 125
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.20 E-value=7.9e-11 Score=107.63 Aligned_cols=157 Identities=14% Similarity=0.148 Sum_probs=87.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhc--ccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN--LPREL 77 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~ 77 (354)
.++|+||||||+|+++|..|+++|++|+|+|+.+.... ..... ......+.|.. .+..-..++.+... .+...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~--~~~~~-~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRW--QADQP-DLRVYAFAADNAALLDRLGVWPAVRAARAQPYRR 82 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCccc--ccCCC-CCEEEEecHHHHHHHHHCCchhhhhHhhCCcccE
Confidence 37999999999999999999999999999999753210 00000 00000000100 00000011111100 00000
Q ss_pred ccccC------CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceE
Q 018550 78 MGFQA------YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (354)
Q Consensus 78 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~ 151 (354)
+.+.+ ..+...... .........+..+.+.+.+.+.+.+++ +.++++|+++..++ +.+++++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~g~---- 154 (392)
T PRK08773 83 MRVWDAGGGGELGFDADTLG-REQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDA-DRVRLRLDDGR---- 154 (392)
T ss_pred EEEEeCCCCceEEechhccC-CCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecC-CeEEEEECCCC----
Confidence 00000 000000000 000001134577888888888888888 89999999998876 67888776654
Q ss_pred EEEeCEEEEeeCCCCCcc
Q 018550 152 EETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 152 ~~~~d~vIlAtG~~s~~~ 169 (354)
++.+|.||.|+|.+|..+
T Consensus 155 ~~~a~~vV~AdG~~S~vr 172 (392)
T PRK08773 155 RLEAALAIAADGAASTLR 172 (392)
T ss_pred EEEeCEEEEecCCCchHH
Confidence 789999999999766433
No 126
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.20 E-value=7.3e-11 Score=107.67 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=87.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce--------eecCCCCC--CCCCCCCCCCCcccccccccchhcc
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS--------WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
||+|||||++|+++|..|++.|++|+|+|+.+.++.. ....+... ...+++..+-.-.....+..+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 6999999999999999999999999999998654211 11100000 0011111000000000000000000
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
...... ..++.... . .........+.++.+.+.+.+.+.+ ++ ++++++|+++...+ +.+.++..++. +
T Consensus 81 ~~~~~~-~~~~~~~~--~-~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~ 149 (385)
T TIGR01988 81 GGSFGA-LHFDADEI--G-LEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHS-DHVELTLDDGQ----Q 149 (385)
T ss_pred CCCCce-EEechhhc--C-CCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecC-CeeEEEECCCC----E
Confidence 000000 00000000 0 0000112345788888888887776 77 89999999998876 77888877764 7
Q ss_pred EEeCEEEEeeCCCCCcc
Q 018550 153 ETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~ 169 (354)
+.+|.||.|+|.+|..+
T Consensus 150 ~~~~~vi~adG~~S~vr 166 (385)
T TIGR01988 150 LRARLLVGADGANSKVR 166 (385)
T ss_pred EEeeEEEEeCCCCCHHH
Confidence 99999999999876544
No 127
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.20 E-value=2.2e-10 Score=104.64 Aligned_cols=141 Identities=21% Similarity=0.174 Sum_probs=84.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
||+|||||+||+++|..|++.|++|+|+|+.+..++.... ++.+.. + .......+..+.-.....+. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~---------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~ 68 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTY---------GVWDDD-L-SDLGLADCVEHVWPDVYEYR-F 68 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccc---------cccHhh-h-hhhchhhHHhhcCCCceEEe-c
Confidence 6999999999999999999999999999998766543211 100000 0 00000000000000000000 0
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeC
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG 163 (354)
+-... ..........+..+.+.+.+.+.+.++. + ...+|..+..++++.+.+++.++. ++.++.||.|+|
T Consensus 69 ~~~~~---~~~~~~~~i~~~~l~~~l~~~~~~~gv~--~-~~~~v~~i~~~~~~~~~v~~~~g~----~~~a~~VI~A~G 138 (388)
T TIGR01790 69 PKQPR---KLGTAYGSVDSTRLHEELLQKCPEGGVL--W-LERKAIHAEADGVALSTVYCAGGQ----RIQARLVIDARG 138 (388)
T ss_pred CCcch---hcCCceeEEcHHHHHHHHHHHHHhcCcE--E-EccEEEEEEecCCceeEEEeCCCC----EEEeCEEEECCC
Confidence 00000 0001111245688899999888888876 5 467888888763377888887664 899999999999
Q ss_pred CCC
Q 018550 164 HFS 166 (354)
Q Consensus 164 ~~s 166 (354)
.++
T Consensus 139 ~~s 141 (388)
T TIGR01790 139 FGP 141 (388)
T ss_pred Cch
Confidence 765
No 128
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.20 E-value=1.9e-10 Score=104.99 Aligned_cols=153 Identities=17% Similarity=0.136 Sum_probs=86.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc---eeecCCCCCCCCCCCCCCC--Ccccccccccchh--cc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETESDPLGVDPNR--YPVHSSLYKSLRV--NL 73 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~ 73 (354)
|+++|+|||||++|+++|..|++.|++|+|+|+.+.+.. .|.. +. .++.|.. .+.....++.+.. ..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~--r~----~~l~~~~~~~l~~~g~~~~~~~~~~~ 77 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDS--RV----YAISPSSQAFLERLGVWQALDAARLA 77 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCC--ce----EeecHHHHHHHHHcCchhhhhhhcCC
Confidence 567999999999999999999999999999999865421 1100 00 0000000 0000001111000 00
Q ss_pred ccccccccC-----CCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 74 PRELMGFQA-----YPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 74 ~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
+...+.+.+ +.+... ....... ....+..+.+.+.+.+.+.+ ++ +. +.+++++...+ +.+.+++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~-~~~~v~~~~g 151 (388)
T PRK07608 78 PVYDMRVFGDAHARLHFSAY--QAGVPQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDP-DAATLTLADG 151 (388)
T ss_pred cceEEEEEECCCceeEeecc--ccCCCCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecC-CeEEEEECCC
Confidence 000000000 000000 0000000 01235778888888887776 66 66 88999998766 6788887776
Q ss_pred CCceEEEEeCEEEEeeCCCCCcc
Q 018550 147 DDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 147 ~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
. ++.+|+||.|+|.+|..+
T Consensus 152 ~----~~~a~~vI~adG~~S~vr 170 (388)
T PRK07608 152 Q----VLRADLVVGADGAHSWVR 170 (388)
T ss_pred C----EEEeeEEEEeCCCCchHH
Confidence 4 799999999999876543
No 129
>PRK07190 hypothetical protein; Provisional
Probab=99.19 E-value=2.3e-10 Score=106.82 Aligned_cols=152 Identities=18% Similarity=0.126 Sum_probs=86.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC-C-cccccccccchhcc-c----
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-Y-PVHSSLYKSLRVNL-P---- 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-~---- 74 (354)
.++|+||||||+|+++|..|+++|++|+|+|+.+.+...-+- .++.|.. . +..-..++.+.... +
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra--------~~l~~~tle~L~~lGl~~~l~~~~~~~~~~ 76 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRA--------DALNARTLQLLELVDLFDELYPLGKPCNTS 76 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccc--------eEeCHHHHHHHHhcChHHHHHhhCccceeE
Confidence 368999999999999999999999999999998654211100 0000000 0 00000011000000 0
Q ss_pred -----cccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 75 -----RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 75 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
..... ....+...............+...+.+.+.+.+.+.|++ +.++++|+++..++ +.+.+++.++.
T Consensus 77 ~~~~~g~~i~-~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~-~~v~v~~~~g~-- 150 (487)
T PRK07190 77 SVWANGKFIS-RQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQ-AGCLTTLSNGE-- 150 (487)
T ss_pred EEecCCceEe-eccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeeEEEECCCc--
Confidence 00000 000000000000000001123456777888888888888 99999999999877 66777766543
Q ss_pred eEEEEeCEEEEeeCCCCCcc
Q 018550 150 VEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~ 169 (354)
++.+++||.|+|.+|..+
T Consensus 151 --~v~a~~vVgADG~~S~vR 168 (487)
T PRK07190 151 --RIQSRYVIGADGSRSFVR 168 (487)
T ss_pred --EEEeCEEEECCCCCHHHH
Confidence 899999999999766544
No 130
>PRK09126 hypothetical protein; Provisional
Probab=99.19 E-value=8.9e-11 Score=107.36 Aligned_cols=158 Identities=22% Similarity=0.202 Sum_probs=83.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc--------ceeecCCCCC--CCCCCCCCCCCcccccccccch
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLR 70 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g--------g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 70 (354)
|+++|+||||||+|+++|..|+++|++|+|+|+.+.+. ......+... ...+++...-.-..........
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 56899999999999999999999999999999976431 0000000000 0001110000000000000000
Q ss_pred hccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
........ .+.+...... ........++..+.+.+.+.+.. .+++ ++++++|++++.++ +.+.+++.++.
T Consensus 82 ~~~~~~~~---~~~~~~~~~~-~~~~g~~~~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~-~~~~v~~~~g~-- 152 (392)
T PRK09126 82 VLNGRSPF---ALTFDARGRG-ADALGYLVPNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDD-DGAQVTLANGR-- 152 (392)
T ss_pred EEcCCCCc---eeEeehhhcC-CCcceEEEeHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcC-CeEEEEEcCCC--
Confidence 00000000 0000000000 00000112345566666555543 4777 99999999998776 67788777664
Q ss_pred eEEEEeCEEEEeeCCCCCcc
Q 018550 150 VEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~ 169 (354)
++.+|+||.|+|.+|..+
T Consensus 153 --~~~a~~vI~AdG~~S~vr 170 (392)
T PRK09126 153 --RLTARLLVAADSRFSATR 170 (392)
T ss_pred --EEEeCEEEEeCCCCchhh
Confidence 899999999999755443
No 131
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.19 E-value=7.8e-11 Score=108.18 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=88.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccc-----eeecCCCC-C-CCCCCCCCCCCcccccccccchhc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGG-----SWIYTSET-E-SDPLGVDPNRYPVHSSLYKSLRVN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg-----~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 72 (354)
+++|+||||||+|+++|..|+++| ++|+|+|+.+.... .....++. . ...+++...-. ........+...
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~-~~~~~~~~~~~~ 79 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIA-PEAQPITDMVIT 79 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhh-hhcCcccEEEEE
Confidence 478999999999999999999995 99999999754210 00000000 0 01111110000 000000000000
Q ss_pred cccc--cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 73 LPRE--LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 73 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.... ......+.+... ............+..+.+.+.+.+.+.+++ ++++++|++++.++ +.+.+++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~--- 152 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGE-VEPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRD-EGVTVTLSDGS--- 152 (403)
T ss_pred eCCCCCCCccceEEeccc-ccCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CEEEEEECCCC---
Confidence 0000 000000000000 000000001235688889998888888888 99999999998876 77888876654
Q ss_pred EEEEeCEEEEeeCCCCCcc
Q 018550 151 EEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~ 169 (354)
++.+|.||.|+|.+|..+
T Consensus 153 -~~~ad~vI~AdG~~S~vr 170 (403)
T PRK07333 153 -VLEARLLVAADGARSKLR 170 (403)
T ss_pred -EEEeCEEEEcCCCChHHH
Confidence 789999999999766533
No 132
>PRK06126 hypothetical protein; Provisional
Probab=99.19 E-value=7.6e-10 Score=105.48 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCcc
Q 018550 100 PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
.++..+.+.+.+.+.+. +++ ++++++++++..++ +.+++++.+ .++...++.+|+||.|+|.+|..+
T Consensus 123 i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR 191 (545)
T PRK06126 123 IPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDA-DGVTATVEDLDGGESLTIRADYLVGCDGARSAVR 191 (545)
T ss_pred CCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECC-CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHH
Confidence 34466778888887764 677 99999999999876 666776655 223345889999999999877544
No 133
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.18 E-value=5.8e-10 Score=77.15 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=67.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+|+|||||+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~------------------------------------------ 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGF------------------------------------------ 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTS------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhc------------------------------------------
Confidence 68999999999999999999999999999987542000
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
. .++..++.+.+++.|++ +++++.+.++..++++ ++|++++|
T Consensus 39 ---~---------------~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 39 ---D---------------PDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGDG-VEVTLEDG 80 (80)
T ss_dssp ---S---------------HHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTS-EEEEEETS
T ss_pred ---C---------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCE-EEEEEecC
Confidence 0 77888999999999999 9999999999998834 66777764
No 134
>PRK06753 hypothetical protein; Provisional
Probab=99.17 E-value=2.1e-10 Score=104.16 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=85.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc---eeecCCCCC--CCCCCCCCCCCcccccccccchhcccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
++|+|||||++|+++|..|++.|++|+|+|+.+.+.. .....++.. ...+++...- .........+....+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~-~~~~~~~~~~~~~~~~g~ 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGI-KNAGQILSTMNLLDDKGT 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHH-HhcCCcccceeEEcCCCC
Confidence 4899999999999999999999999999999875431 111110000 0001110000 000000000000000000
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
.+...++.. ........+..+.+.+.+.+. ..+ ++++++|++++.++ +.+.+++.++. ++.+|.
T Consensus 80 -~~~~~~~~~------~~~~~~i~R~~l~~~L~~~~~--~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~~~ 143 (373)
T PRK06753 80 -LLNKVKLKS------NTLNVTLHRQTLIDIIKSYVK--EDA--IFTGKEVTKIENET-DKVTIHFADGE----SEAFDL 143 (373)
T ss_pred -EEeeccccc------CCccccccHHHHHHHHHHhCC--Cce--EEECCEEEEEEecC-CcEEEEECCCC----EEecCE
Confidence 000000000 001112455777777766654 234 89999999998766 77888887764 789999
Q ss_pred EEEeeCCCCCccc
Q 018550 158 VVVCNGHFSVPRL 170 (354)
Q Consensus 158 vIlAtG~~s~~~~ 170 (354)
||.|+|.+|.-+.
T Consensus 144 vigadG~~S~vR~ 156 (373)
T PRK06753 144 CIGADGIHSKVRQ 156 (373)
T ss_pred EEECCCcchHHHH
Confidence 9999998776654
No 135
>PRK06185 hypothetical protein; Provisional
Probab=99.16 E-value=1.8e-10 Score=105.83 Aligned_cols=161 Identities=21% Similarity=0.255 Sum_probs=83.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee---ecCCCCC--CCCCCCCCCCCcccccccccchhcccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW---IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (354)
+.+||+|||||++|+++|..|+++|++|+|+|+.+...... ...+... ...++..+.-.-.....+..+......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 35799999999999999999999999999999975431100 0000000 000111100000000000000000000
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcE-EEEEeecCCceEEE
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEE 153 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~ 153 (354)
......++. .. ........+..+..+.+.+.+.+.+. +++ +.++++++++..++ +.. .+.+...++ +.++
T Consensus 85 ~~~~~~~~~--~~--~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~-~~v~~v~~~~~~g-~~~i 156 (407)
T PRK06185 85 RTVTLADFS--RL--PTPYPYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEG-GRVTGVRARTPDG-PGEI 156 (407)
T ss_pred eEEEecchh--hc--CCCCCcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeC-CEEEEEEEEcCCC-cEEE
Confidence 000000000 00 00000011234467778888777664 677 88999999998876 433 244432211 1478
Q ss_pred EeCEEEEeeCCCCCcc
Q 018550 154 TFDAVVVCNGHFSVPR 169 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~ 169 (354)
.+|.||.|+|.+|.-+
T Consensus 157 ~a~~vI~AdG~~S~vr 172 (407)
T PRK06185 157 RADLVVGADGRHSRVR 172 (407)
T ss_pred EeCEEEECCCCchHHH
Confidence 9999999999876433
No 136
>PRK07538 hypothetical protein; Provisional
Probab=99.16 E-value=6e-10 Score=102.50 Aligned_cols=153 Identities=20% Similarity=0.159 Sum_probs=86.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhcc-ccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-PRE 76 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 76 (354)
++|+|||||++|+++|..|+++|++|+|+|+.+.+. ......++.. ...++ +++.+.... +..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lg-----------l~~~l~~~~~~~~ 69 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELG-----------LLDALDAIGIRTR 69 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCC-----------CHHHHHhhCCCCc
Confidence 489999999999999999999999999999976542 1111110000 00011 111111000 000
Q ss_pred ccccc--------CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCC-cceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 77 LMGFQ--------AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGV-DQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 77 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
.+.+. ..+.... ...........+..+.+.+.+.+.+ .+. . ++++++|+++..++ +...+.+.++
T Consensus 70 ~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~--i~~~~~v~~~~~~~-~~~~~~~~~~ 144 (413)
T PRK07538 70 ELAYFNRHGQRIWSEPRGLA--AGYDWPQYSIHRGELQMLLLDAVRERLGPDA--VRTGHRVVGFEQDA-DVTVVFLGDR 144 (413)
T ss_pred ceEEEcCCCCEEeeccCCcc--cCCCCceEEEEHHHHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecC-CceEEEEecc
Confidence 00000 0000000 0000011124567888888777654 453 4 89999999998776 5556665543
Q ss_pred C-CceEEEEeCEEEEeeCCCCCcccC
Q 018550 147 D-DVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 147 ~-~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
. +...++.+|.||.|+|.+|..+..
T Consensus 145 ~~g~~~~~~adlvIgADG~~S~vR~~ 170 (413)
T PRK07538 145 AGGDLVSVRGDVLIGADGIHSAVRAQ 170 (413)
T ss_pred CCCccceEEeeEEEECCCCCHHHhhh
Confidence 2 223589999999999987765543
No 137
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.15 E-value=2.3e-10 Score=104.18 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=83.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC--CCCCCCCCCCCCC--Ccccccccccchhc--ccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS--ETESDPLGVDPNR--YPVHSSLYKSLRVN--LPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~ 75 (354)
.++|+||||||+|+++|..|++.|++|+|||+.+.. .+...+ +.. ...+.|.. .+..-..++.+... .+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~--~~~~~~~~~~r--~~~l~~~~~~~L~~lG~~~~~~~~~~~~~ 78 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPK--AFEPSQPMDIR--VSAISQTSVDLLESLGAWSSIVAMRVCPY 78 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcc--cCCCCCCCCcc--EEEecHHHHHHHHHCCCchhhhHhhCCcc
Confidence 369999999999999999999999999999986411 000000 000 00001100 00000011111100 000
Q ss_pred -ccccccC----CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 76 -ELMGFQA----YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 76 -~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.+..+.. ..+........... ....+..+...+.+.+... +++ +++++++++++.++ +.+++++.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~-~~~~v~~~~g~-- 152 (384)
T PRK08849 79 KRLETWEHPECRTRFHSDELNLDQLG-YIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSA-EGNRVTLESGA-- 152 (384)
T ss_pred ceEEEEeCCCceEEecccccCCCccE-EEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcC-CeEEEEECCCC--
Confidence 0000000 00000000000000 0112245555565555543 566 89999999999876 77888888764
Q ss_pred eEEEEeCEEEEeeCCCCCccc
Q 018550 150 VEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.+|.||.|+|.+|.-+.
T Consensus 153 --~~~~~lvIgADG~~S~vR~ 171 (384)
T PRK08849 153 --EIEAKWVIGADGANSQVRQ 171 (384)
T ss_pred --EEEeeEEEEecCCCchhHH
Confidence 8999999999998776554
No 138
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.14 E-value=2.5e-10 Score=93.66 Aligned_cols=148 Identities=23% Similarity=0.355 Sum_probs=84.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccc------
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE------ 76 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 76 (354)
-+|+|||+|++|++||..|+..|++|++|||+..+||.+....-.. -.+..-.+...-....+..+.....+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~-g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG-GRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC-ccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 3699999999999999999999999999999998988775421000 000000000000111111111111111
Q ss_pred ---cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 77 ---LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
++.+.+-..... ..+.....-|....+.+++. .+++ |+++++|+.+.+.+ +.|+++..+++ ...
T Consensus 81 ~~~~~~~~~~~~~~~--~d~~pyvg~pgmsalak~LA-----tdL~--V~~~~rVt~v~~~~-~~W~l~~~~g~---~~~ 147 (331)
T COG3380 81 TPAVWTFTGDGSPPR--GDEDPYVGEPGMSALAKFLA-----TDLT--VVLETRVTEVARTD-NDWTLHTDDGT---RHT 147 (331)
T ss_pred cccccccccCCCCCC--CCCCccccCcchHHHHHHHh-----ccch--hhhhhhhhhheecC-CeeEEEecCCC---ccc
Confidence 111110000000 00000112233334443222 2455 88999999999987 99999998876 478
Q ss_pred EeCEEEEeeCC
Q 018550 154 TFDAVVVCNGH 164 (354)
Q Consensus 154 ~~d~vIlAtG~ 164 (354)
.+|.||+|.-.
T Consensus 148 ~~d~vvla~PA 158 (331)
T COG3380 148 QFDDVVLAIPA 158 (331)
T ss_pred ccceEEEecCC
Confidence 99999999874
No 139
>PLN02697 lycopene epsilon cyclase
Probab=99.13 E-value=5.8e-10 Score=104.05 Aligned_cols=140 Identities=17% Similarity=0.144 Sum_probs=82.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||||+++|..|++.|++|+++|+...+...+-.+.. .....+..+. + ...|.......+..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~-~l~~lgl~~~---i-~~~w~~~~v~~~~~----- 177 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWED-EFKDLGLEDC---I-EHVWRDTIVYLDDD----- 177 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchh-HHHhcCcHHH---H-HhhcCCcEEEecCC-----
Confidence 479999999999999999999999999999985333211100000 0000000000 0 00011000000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE-EEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~~~~d~vIl 160 (354)
.. . ..........+..+.+.+.+.+.+.+++ + ++++|+++..++ +.+.+ +..++. ++.++.||+
T Consensus 178 -----~~-~-~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~-~~~~vv~~~dG~----~i~A~lVI~ 242 (529)
T PLN02697 178 -----KP-I-MIGRAYGRVSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEAS-DGLRLVACEDGR----VIPCRLATV 242 (529)
T ss_pred -----ce-e-eccCcccEEcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcC-CcEEEEEEcCCc----EEECCEEEE
Confidence 00 0 0001112246688889999888888887 5 678999998765 55543 444443 799999999
Q ss_pred eeCCCC
Q 018550 161 CNGHFS 166 (354)
Q Consensus 161 AtG~~s 166 (354)
|+|.++
T Consensus 243 AdG~~S 248 (529)
T PLN02697 243 ASGAAS 248 (529)
T ss_pred CCCcCh
Confidence 999876
No 140
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.13 E-value=8.2e-10 Score=100.89 Aligned_cols=160 Identities=23% Similarity=0.286 Sum_probs=85.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc------cceeecCCCCC-CCCCCCCCCCCcccccccccchhcc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~------gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
|+++|+||||||+|+++|..|++.|++|+|+|+.+.. ++......... ...+|+...-. ........+....
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~-~~~~~~~~~~~~~ 79 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMD-REGLVHDGIELRF 79 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHH-hcCCccCcEEEEE
Confidence 6789999999999999999999999999999997642 11111000000 01112110000 0000000000000
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
.... ..+++.... .......+ .+..+.+.+.+.+...+++ +++++++++++..+++...++... +++..++
T Consensus 80 ~g~~---~~~~~~~~~--~~~~~~~~-~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~~~~V~~~~-~G~~~~i 150 (392)
T PRK08243 80 DGRR---HRIDLTELT--GGRAVTVY-GQTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSDRPYVTYEK-DGEEHRL 150 (392)
T ss_pred CCEE---EEecccccc--CCceEEEe-CcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCCceEEEEEc-CCeEEEE
Confidence 0000 011111000 00000011 2345666666666667887 999999999986222555666632 1223578
Q ss_pred EeCEEEEeeCCCCCccc
Q 018550 154 TFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~~ 170 (354)
++|+||.|+|.+|..+.
T Consensus 151 ~ad~vVgADG~~S~vR~ 167 (392)
T PRK08243 151 DCDFIAGCDGFHGVSRA 167 (392)
T ss_pred EeCEEEECCCCCCchhh
Confidence 99999999998776654
No 141
>PRK05868 hypothetical protein; Validated
Probab=99.13 E-value=4.7e-10 Score=101.54 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=84.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc---eeecCCCCC--CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+++|+|||||++|+++|..|++.|++|+|+|+.+.+.. .....+... ...+++.... .........+....+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~-~~~~~~~~~~~~~~~~g 79 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAA-QEHKTRIRGASFVDRDG 79 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHH-HhhccCccceEEEeCCC
Confidence 46899999999999999999999999999999765421 111111000 0111111000 00000000000000000
Q ss_pred cccccCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 77 LMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
..+........ ......... ...+.++.+.+.+.+ ..+++ ++++++|++++.++ +..+++..++. ++.+
T Consensus 80 -~~~~~~~~~~~-~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~dg~----~~~a 149 (372)
T PRK05868 80 -NELFRDTESTP-TGGPVNSPDIELLRDDLVELLYGAT-QPSVE--YLFDDSISTLQDDG-DSVRVTFERAA----AREF 149 (372)
T ss_pred -CEEeecccccc-cCCCCCCceEEEEHHHHHHHHHHhc-cCCcE--EEeCCEEEEEEecC-CeEEEEECCCC----eEEe
Confidence 00000000000 000000000 112345555544322 23566 89999999998765 77888888875 7899
Q ss_pred CEEEEeeCCCCCcccC
Q 018550 156 DAVVVCNGHFSVPRLA 171 (354)
Q Consensus 156 d~vIlAtG~~s~~~~p 171 (354)
|.||.|+|.+|.-+..
T Consensus 150 dlvIgADG~~S~vR~~ 165 (372)
T PRK05868 150 DLVIGADGLHSNVRRL 165 (372)
T ss_pred CEEEECCCCCchHHHH
Confidence 9999999987776653
No 142
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.12 E-value=2.4e-10 Score=104.22 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=85.8
Q ss_pred eEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhcc-cccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-PRELMG 79 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 79 (354)
||+||||||+|+++|..|+++| ++|+|+|+.+.+.......+.. .++.|.. .+..-.+++.+.... +.....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~----~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARS----LALSYGSKQILEKLGLWPKLAPFATPILDIH 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCee----EeccHHHHHHHHHCCChhhhHhhcCccceEE
Confidence 6999999999999999999999 9999999976432110000000 0111100 000000111110000 000000
Q ss_pred ccCC-CCCccCCC---CCCCCC-CCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 80 FQAY-PFVARNYE---GSVDLR-RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 80 ~~~~-~~~~~~~~---~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
+... .+...... ...... ....+..+.+.+.+.+... +++ ++++++|+++..++ +.+++++.++. ++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~ 149 (382)
T TIGR01984 77 VSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQ-DYVRVTLDNGQ----QL 149 (382)
T ss_pred EEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcC-CeEEEEECCCC----EE
Confidence 0000 00000000 000000 1134578888888888774 888 89899999998776 77888876654 78
Q ss_pred EeCEEEEeeCCCCCc
Q 018550 154 TFDAVVVCNGHFSVP 168 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~ 168 (354)
.+|.||.|+|.+|.-
T Consensus 150 ~ad~vV~AdG~~S~v 164 (382)
T TIGR01984 150 RAKLLIAADGANSKV 164 (382)
T ss_pred EeeEEEEecCCChHH
Confidence 999999999977653
No 143
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.12 E-value=7.2e-10 Score=104.22 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
+...+...+...+.+.|.+ +..+++|+++..++ +.|.+.+.++.+++.++.++.||+|+|.|+...
T Consensus 153 d~~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 153 DDARLVVLNALDAAERGAT--ILTRTRCVSARREG-GLWRVETRDADGETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred cHHHHHHHHHHHHHHCCCE--EecCcEEEEEEEcC-CEEEEEEEeCCCCEEEEEecEEEECCCccHHHH
Confidence 3366666777777888988 99999999998876 678888777654456799999999999877543
No 144
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.12 E-value=5.3e-10 Score=89.05 Aligned_cols=137 Identities=19% Similarity=0.201 Sum_probs=84.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc-ccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM-GFQ 81 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (354)
.||+|+||||+|++||+.|++.|.+|++||++-.+||.+... ..+++.+....|...+ +-.
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~G------------------Gmlf~~iVv~~~a~~iL~e~ 92 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGG------------------GMLFNKIVVREEADEILDEF 92 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccccc------------------ccccceeeecchHHHHHHHh
Confidence 589999999999999999999999999999988887554331 1123333222222111 111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-------EEEEEeecC-CceEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-------WKVKSRKKD-DVVEEE 153 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-------~~v~~~~g~-~~~~~~ 153 (354)
+.++... .....-.+..++...+...+-+.|.+ +...+.|.++...++.. |+.....+. -....+
T Consensus 93 gI~ye~~-----e~g~~v~ds~e~~skl~~~a~~aGak--i~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i 165 (262)
T COG1635 93 GIRYEEE-----EDGYYVADSAEFASKLAARALDAGAK--IFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTI 165 (262)
T ss_pred CCcceec-----CCceEEecHHHHHHHHHHHHHhcCce--eeecceEEEEEEecCCceEEEEEecchhhhcccccCccee
Confidence 2333221 01111123366777777777777877 88899999998766321 222211110 002478
Q ss_pred EeCEEEEeeCC
Q 018550 154 TFDAVVVCNGH 164 (354)
Q Consensus 154 ~~d~vIlAtG~ 164 (354)
++++||-|||+
T Consensus 166 ~a~~VvDaTGH 176 (262)
T COG1635 166 RAKAVVDATGH 176 (262)
T ss_pred eEEEEEeCCCC
Confidence 99999999997
No 145
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.10 E-value=6e-10 Score=101.09 Aligned_cols=157 Identities=10% Similarity=0.161 Sum_probs=86.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhcc-ccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-PRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~ 78 (354)
+.+|+||||||+|+++|..|++.|++|+|+|+.+.........+.. .++.|.. .+..-..++.+.... +-..+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~----~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 76 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRT----TALTPHSKNFLFSIDIWEELEKFVAEMQDI 76 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceE----EEeCHHHHHHHHHCCcHHHHHhhcCCCcEE
Confidence 4689999999999999999999999999999863211110000000 0111110 000000111111000 00000
Q ss_pred cccCCC-CCccCCCCCC-C-CCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 79 GFQAYP-FVARNYEGSV-D-LRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 79 ~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
.+.+.. .......... . ......+.++.+.+.+.+.+.+ ++ ++++++++++..++ +.+.++..++ ++.
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~~-----~~~ 148 (374)
T PRK06617 77 YVVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHN-DYSIIKFDDK-----QIK 148 (374)
T ss_pred EEEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcC-CeEEEEEcCC-----EEe
Confidence 000000 0000000000 0 0011356888888888887764 66 78899999998876 6777777542 799
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|.||.|+|.+|.-+.
T Consensus 149 adlvIgADG~~S~vR~ 164 (374)
T PRK06617 149 CNLLIICDGANSKVRS 164 (374)
T ss_pred eCEEEEeCCCCchhHH
Confidence 9999999998776664
No 146
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.10 E-value=7.4e-10 Score=101.17 Aligned_cols=149 Identities=23% Similarity=0.181 Sum_probs=84.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCC--CCcccccccccchhcc-cccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN--RYPVHSSLYKSLRVNL-PRELMG 79 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~ 79 (354)
++|+|||||++|+++|..|++.|++|+|||+.+..... .. .++.+. ..+..-..++.+.... +...+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~--r~-------~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~ 78 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADL--RT-------TALLGPSIRFLERLGLWARLAPHAAPLQSMR 78 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCc--ch-------hhCcHHHHHHHHHhCchhhhHhhcceeeEEE
Confidence 58999999999999999999999999999997543210 00 000000 0000001111111000 000000
Q ss_pred ccCC----------CCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 80 FQAY----------PFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 80 ~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
+.+. .+... ........ ...+..+.+.+.+.+.+.+.. .+++++|++++.++ +.+++++.++.
T Consensus 79 ~~~~~g~~~~~~~~~~~~~--~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~~g~- 152 (388)
T PRK07494 79 IVDATGRLIRAPEVRFRAA--EIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPRE-DEVTVTLADGT- 152 (388)
T ss_pred EEeCCCCCCCCceEEEcHH--hcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcC-CeEEEEECCCC-
Confidence 0000 00000 00000001 134467778888777766544 47789999998876 77888877654
Q ss_pred ceEEEEeCEEEEeeCCCCCcc
Q 018550 149 VVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~ 169 (354)
.+.+|.||.|+|.+|..+
T Consensus 153 ---~~~a~~vI~AdG~~S~vr 170 (388)
T PRK07494 153 ---TLSARLVVGADGRNSPVR 170 (388)
T ss_pred ---EEEEeEEEEecCCCchhH
Confidence 799999999999766543
No 147
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.09 E-value=5.9e-10 Score=101.22 Aligned_cols=80 Identities=19% Similarity=0.062 Sum_probs=58.2
Q ss_pred EEEEccCCCHHHHH-HHHh----ccCCEEEEEEecCC--------ccccccCCCCC-CeEEecceeEEecC-CcE---EE
Q 018550 200 VILIGHYASGLDIK-RDLA----GFAKEVHIASRSVA--------DETHEKQPGYD-NMWLHSMVERANED-GTV---VF 261 (354)
Q Consensus 200 v~ViG~G~~g~e~a-~~l~----~~g~~v~~~~r~~~--------~~~~~~l~~~~-~~~~~~~v~~v~~~-~~v---~~ 261 (354)
=+|++.+.+|+|.+ ..++ +.|.+|+++...++ +.+.+.+.+.+ +++.++.|.+++.+ +.+ ..
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~ 297 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWT 297 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 37889999999998 5554 46999999988775 22334444445 89999999998743 332 23
Q ss_pred ccC--cEEecCEEEEcccCC
Q 018550 262 RNG--RVVSADVIMHCTGLT 279 (354)
Q Consensus 262 ~~g--~~~~~D~vi~a~G~~ 279 (354)
.++ ..+.+|.+|+|+|..
T Consensus 298 ~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 298 RNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred eCCceEEEECCEEEEeCCCc
Confidence 344 358899999999986
No 148
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.09 E-value=1.4e-09 Score=103.67 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=87.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce---eecCCCCC--CCCCCCCCCCCcccccccccchhc-ccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN-LPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 75 (354)
+++|+||||||+|+++|..|+++|++|+|||+.+.+... +...++.. ...+++...- ......+...... ...
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l-~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERM-VDKGVSWNVGKVFLRDE 101 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHH-HhhCceeeceeEEeCCC
Confidence 468999999999999999999999999999998654211 11111000 0011111000 0000000000000 000
Q ss_pred ccccccCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 76 ELMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
... .++.... ...... .....+..+.+++.+.+.+. +++ +++++++++++.++ +.++++..+.++ ..++
T Consensus 102 ~~~---~~~~~~~--~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~i 172 (547)
T PRK08132 102 EVY---RFDLLPE--PGHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHD-DGVTLTVETPDG-PYTL 172 (547)
T ss_pred eEE---EecCCCC--CCCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcC-CEEEEEEECCCC-cEEE
Confidence 000 0000000 000000 01124467778888887765 566 89999999999877 677776654322 2478
Q ss_pred EeCEEEEeeCCCCCcc
Q 018550 154 TFDAVVVCNGHFSVPR 169 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~ 169 (354)
.+|+||.|+|.+|.-+
T Consensus 173 ~ad~vVgADG~~S~vR 188 (547)
T PRK08132 173 EADWVIACDGARSPLR 188 (547)
T ss_pred EeCEEEECCCCCcHHH
Confidence 9999999999766544
No 149
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.09 E-value=2.3e-09 Score=100.74 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCcc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
..+...+...+.+.|.+ +..+++|+++..++ +.|.+.+.+. +++..++.++.||+|+|.|+...
T Consensus 155 ~rl~~~l~~~A~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l 219 (508)
T PRK12266 155 ARLVVLNARDAAERGAE--ILTRTRVVSARREN-GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQF 219 (508)
T ss_pred HHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHH
Confidence 55556666667778988 89999999998766 6788877652 12235799999999999876443
No 150
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.09 E-value=9.1e-10 Score=100.37 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=84.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc------cceeecCCCCC-CCCCCCCCCCCcccccccccchhc-
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVN- 72 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~------gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 72 (354)
|.++|+|||||++|+++|..|++.|++|+|+|+.+.. +......+... ...+| +++.+...
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lG-----------l~~~l~~~~ 69 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAG-----------VDERMDREG 69 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCC-----------ChHHHHhcC
Confidence 6789999999999999999999999999999997641 11111000000 01111 11111100
Q ss_pred cccccccc------cCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe-
Q 018550 73 LPRELMGF------QAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR- 144 (354)
Q Consensus 73 ~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~- 144 (354)
.+...+.+ ..+++... ...... ...+..+...+.+.+...+.. ++++.+++.+...+++...|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~~~~~~V~~~~ 143 (390)
T TIGR02360 70 LVHEGTEIAFDGQRFRIDLKAL----TGGKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLAGDRPYVTFER 143 (390)
T ss_pred ceecceEEeeCCEEEEEecccc----CCCceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecCCCccEEEEEE
Confidence 00000000 00111100 000000 012345666676666666777 88888887776533255666664
Q ss_pred ecCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 145 KKDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 145 ~g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
+|. ..++++|.||.|+|.+|.-+..
T Consensus 144 ~g~--~~~i~adlvIGADG~~S~VR~~ 168 (390)
T TIGR02360 144 DGE--RHRLDCDFIAGCDGFHGVSRAS 168 (390)
T ss_pred CCe--EEEEEeCEEEECCCCchhhHHh
Confidence 442 2478999999999988766543
No 151
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.08 E-value=6.1e-10 Score=102.53 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=83.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCccc---ccccccchhcc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVH---SSLYKSLRVNL 73 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~ 73 (354)
.+|+|||||++|+++|..|+++| ++|+|+|+.+.++ ......++.. ...+++.....-.. ...+.......
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 47999999999999999999998 6999999986653 1221111100 01111110000000 00000000000
Q ss_pred cc-ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 74 PR-ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 74 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
.. ....+...... .........+.++.+.+.+.+. ... ++++++|++++.++ ++++++..++. +
T Consensus 81 ~~~~~~~~~~~~~~------~~~~~~~i~R~~l~~~L~~~~~--~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~ 145 (414)
T TIGR03219 81 RNGSDASYLGATIA------PGVGQSSVHRADFLDALLKHLP--EGI--ASFGKRATQIEEQA-EEVQVLFTDGT----E 145 (414)
T ss_pred EecCccceeeeecc------ccCCcccCCHHHHHHHHHHhCC--Cce--EEcCCEEEEEEecC-CcEEEEEcCCC----E
Confidence 00 00000000000 0001112345667666665542 233 78899999999876 77999888765 7
Q ss_pred EEeCEEEEeeCCCCCccc
Q 018550 153 ETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~ 170 (354)
+.+|.||+|+|.+|.-|.
T Consensus 146 ~~ad~vVgADG~~S~vR~ 163 (414)
T TIGR03219 146 YRCDLLIGADGIKSALRD 163 (414)
T ss_pred EEeeEEEECCCccHHHHH
Confidence 899999999998876543
No 152
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.07 E-value=4.6e-10 Score=102.77 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=83.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceee-cCCCCCCCCCCCCCCC--Ccccccccccchhcc-c
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWI-YTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-P 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~ 74 (354)
+++|+||||||+|+++|..|+++ |++|+|+|+......... ..+.. .++.|.. .+..-.+++.+.... +
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~----~~l~~~~~~~l~~lgl~~~~~~~~~~ 78 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARA----IALAAGTCQQLARLGVWQALADCATP 78 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccc----eeccHHHHHHHHHCCChhhhHhhcCC
Confidence 47999999999999999999998 999999999522110000 00000 0000000 000001111111100 0
Q ss_pred cccccccC---C---CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecC
Q 018550 75 RELMGFQA---Y---PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKD 147 (354)
Q Consensus 75 ~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~ 147 (354)
...+.+.+ . .+...... .........+..+.+.+.+.+... +++ ++++++|+++...+ +.+.+++.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~-~~~~v~~~~g~ 154 (395)
T PRK05732 79 ITHIHVSDRGHAGFVRLDAEDYG-VPALGYVVELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQ-GSVRVTLDDGE 154 (395)
T ss_pred ccEEEEecCCCCceEEeehhhcC-CCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcC-CeEEEEECCCC
Confidence 00000000 0 00000000 000001123456667777766553 677 88899999998766 77888887664
Q ss_pred CceEEEEeCEEEEeeCCCCCc
Q 018550 148 DVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 148 ~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.+.+|+||.|+|.++.-
T Consensus 155 ----~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 155 ----TLTGRLLVAADGSHSAL 171 (395)
T ss_pred ----EEEeCEEEEecCCChhh
Confidence 78999999999976653
No 153
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.07 E-value=6.2e-10 Score=102.17 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=83.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC-CCc--cceeecCCCCCCCCCCCCCCC--Ccccccccccchhc--ccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV--GGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN--LPR 75 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~-~~~--gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~ 75 (354)
++|+||||||+|+++|..|++.|++|+|+|+. +.. +... ..+. .++.|.. .+..-..++.+... .+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~--~~r~----~~l~~~~~~~L~~lGl~~~l~~~~~~~~ 78 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELP--DVRV----SALSRSSEHILRNLGAWQGIEARRAAPY 78 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCC--Ccce----ecccHHHHHHHHhCCchhhhhhhhCCcc
Confidence 69999999999999999999999999999985 211 1000 0000 0011100 00000111111110 000
Q ss_pred ccccccCCC-CCccCCCCC-CCCCC---CCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 76 ELMGFQAYP-FVARNYEGS-VDLRR---YPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 76 ~~~~~~~~~-~~~~~~~~~-~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
..+.+.+-. ......... ...+. ...+..+.+.+.+.+.+. +++ +.++++|+++..++ +.++++..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~~~v~~~~g~-- 153 (405)
T PRK08850 79 IAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGE-SEAWLTLDNGQ-- 153 (405)
T ss_pred cEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeC-CeEEEEECCCC--
Confidence 000000000 000000000 00000 112345666666666554 566 88999999998876 67788887764
Q ss_pred eEEEEeCEEEEeeCCCCCccc
Q 018550 150 VEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.+|+||.|+|.+|.-+.
T Consensus 154 --~~~a~lvIgADG~~S~vR~ 172 (405)
T PRK08850 154 --ALTAKLVVGADGANSWLRR 172 (405)
T ss_pred --EEEeCEEEEeCCCCChhHH
Confidence 8999999999997665443
No 154
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.06 E-value=3.1e-09 Score=98.62 Aligned_cols=162 Identities=23% Similarity=0.280 Sum_probs=89.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceeecCCCCCC---CC----CCCC--CCCC----------cccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETES---DP----LGVD--PNRY----------PVHS 63 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~~~~~~~~---~~----~~~~--~~~~----------~~~~ 63 (354)
||||||+|.+|+++|..++++| .+|+|+||.+..||......+... .. .+.. ++.. ..+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 6999999999999999999999 999999998877765444322110 00 0000 0000 0001
Q ss_pred cccccchhcccccccccc-CCCCCccC---CCCC-CC-----CCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEE
Q 018550 64 SLYKSLRVNLPRELMGFQ-AYPFVARN---YEGS-VD-----LRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133 (354)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~-~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 133 (354)
.+...+..+.+.....+. +.++.... .... .. .........+.+.+.+.+.+.+++ ++++++|+++..
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~~ 158 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGID--TRLNSKVEDLIQ 158 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeEE
Confidence 111111111111100001 11111000 0000 00 011123467888888888888998 999999999998
Q ss_pred eCCC-cEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 134 VESN-KWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 134 ~~~~-~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
++++ ...+...+..+....+.++.||+|+|.++.
T Consensus 159 ~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 159 DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 6433 233444433333346789999999997664
No 155
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.05 E-value=3e-09 Score=96.31 Aligned_cols=135 Identities=20% Similarity=0.245 Sum_probs=84.0
Q ss_pred eEEEEcCChHHHHHHHHH--HHcCCcEEEEeeCCCcc--c--eeecCCCCCCCCCCCCCCCCcccccccccchhcccccc
Q 018550 4 HVAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVG--G--SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l--~~~g~~v~lie~~~~~g--g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
||+|||||+||+++|..| ++.|.+|+|+|+.+..+ . +|..+.. ...+ ..-.-...|+......+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~------~~~~-~~~~v~~~w~~~~v~~~~~~ 73 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEK------DLGP-LDSLVSHRWSGWRVYFPDGS 73 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccc------cccc-hHHHHheecCceEEEeCCCc
Confidence 799999999999999999 77899999999876541 1 1111100 0000 00000111221111111111
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
..... .......+..+.+++.+.+...+ . ..++.+|++|+..+ +.+.+.+.+|. ++.++.
T Consensus 74 ~~~~~------------~~Y~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~-~~~~v~~~~g~----~i~a~~ 133 (374)
T PF05834_consen 74 RILID------------YPYCMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETG-DGVLVVLADGR----TIRARV 133 (374)
T ss_pred eEEcc------------cceEEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecC-ceEEEEECCCC----EEEeeE
Confidence 00000 11123466888899888888434 3 57889999999887 67888888876 899999
Q ss_pred EEEeeCCC
Q 018550 158 VVVCNGHF 165 (354)
Q Consensus 158 vIlAtG~~ 165 (354)
||.|+|..
T Consensus 134 VvDa~g~~ 141 (374)
T PF05834_consen 134 VVDARGPS 141 (374)
T ss_pred EEECCCcc
Confidence 99999953
No 156
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.05 E-value=2.3e-09 Score=98.02 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
+...+.+.+.+.+.+.|++ +.++++|.++...+ +.+.+.+.++ ++.+|.||+|+|.|+
T Consensus 147 d~~~l~~aL~~~~~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~g-----~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGE--IRLGAEVTALDEHA-NGVVVRTTQG-----EYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEecC-CeEEEEECCC-----EEEeCEEEECCCcch
Confidence 3477888888888888988 89999999998766 6677766543 689999999999865
No 157
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.04 E-value=2.5e-09 Score=96.37 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE-EEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
+...+.+.+.+.+.+.|++ ++.+++|+++..++ +.++ |.+.++ .+.+|.||+|+|.|+..
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~-~~v~gv~~~~g-----~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVE--IRTGTEVTSIDVDG-GRVTGVRTSDG-----EIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-E--EEESEEEEEEEEET-TEEEEEEETTE-----EEEECEEEE--GGGHHH
T ss_pred cccchhhhhHHHHHHhhhh--ccccccccchhhcc-ccccccccccc-----ccccceeEeccccccee
Confidence 3478999999999999999 99999999999988 7787 888876 59999999999976544
No 158
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.03 E-value=5e-09 Score=97.98 Aligned_cols=163 Identities=19% Similarity=0.223 Sum_probs=86.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC--ccceeecCCCCC--C-CCC---C--CCCCCCc----------c
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ--VGGSWIYTSETE--S-DPL---G--VDPNRYP----------V 61 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~--~gg~~~~~~~~~--~-~~~---~--~~~~~~~----------~ 61 (354)
..||||||+|++|+++|..|++.|.+|+|+||.+. .||......+.. . .+. . ..++..+ .
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRT 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCC
Confidence 47999999999999999999999999999999763 455433322210 0 000 0 0000000 0
Q ss_pred cccccccchhcccccccccc--CCCCCccCCCCC--CCCCC--CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC
Q 018550 62 HSSLYKSLRVNLPRELMGFQ--AYPFVARNYEGS--VDLRR--YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE 135 (354)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~ 135 (354)
...+...+..+.+.....+. +.++........ ..... ......+...+.+.+++.+++ ++++++|+++..++
T Consensus 84 ~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~--i~~~t~v~~l~~~~ 161 (466)
T PRK08274 84 DEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVE--IRYDAPVTALELDD 161 (466)
T ss_pred CHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC
Confidence 00000000001100000000 111111000000 00000 011356778888888888988 99999999998755
Q ss_pred CCcE-EEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 136 SNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 136 ~~~~-~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+.. .+...+..+....+.++.||+|||.+..
T Consensus 162 -g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 162 -GRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred -CeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 433 3444322223357899999999996543
No 159
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.03 E-value=2.5e-09 Score=100.15 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=80.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC-CccceeecCCCCCCCCCCCCCCCCccc-ccccccch-------hc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLR-------VN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~ 72 (354)
++||+|||||+||++||..+++.|.+|.|+|++. .+|+ + .|.|...... ......+. ..
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~-m-----------~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ-M-----------SCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc-c-----------CCccccccchhhHHHHHHHhcCCHHHHH
Confidence 4799999999999999999999999999999873 4443 1 1111111000 00000000 00
Q ss_pred cccccccccCCCCCccCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 73 LPRELMGFQAYPFVARNYEGSV-DLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
....... +......-.... ......++..+...+.+.+.+. ++. + ++.+|.++..+++....|.+.+|.
T Consensus 72 ~d~~giq---~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~--I-~q~~V~~Li~e~grV~GV~t~dG~--- 142 (618)
T PRK05192 72 IDKTGIQ---FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLD--L-FQGEVEDLIVENGRVVGVVTQDGL--- 142 (618)
T ss_pred HhhccCc---eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEecCCEEEEEEECCCC---
Confidence 0000000 110000000000 0111234566777777777655 666 4 567888887665233446666654
Q ss_pred EEEEeCEEEEeeCCCC
Q 018550 151 EEETFDAVVVCNGHFS 166 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s 166 (354)
.+.++.||+|||.+.
T Consensus 143 -~I~Ak~VIlATGTFL 157 (618)
T PRK05192 143 -EFRAKAVVLTTGTFL 157 (618)
T ss_pred -EEECCEEEEeeCcch
Confidence 899999999999654
No 160
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.02 E-value=1.3e-10 Score=107.01 Aligned_cols=147 Identities=22% Similarity=0.209 Sum_probs=37.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
||||||||++|++||.++++.|.+|+|+|+.+.+||................ .......+..+...... ....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~---~~~~~gi~~e~~~~~~~----~~~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDE---DQVIGGIFREFLNRLRA----RGGY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHH---HHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchh---hccCCCHHHHHHHHHhh----hccc
Confidence 7999999999999999999999999999999999987665311000000000 00001112222211111 0000
Q ss_pred CCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 84 PFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+.... ..+.. .......+...+.+.+.+.|++ +.+++.|.++..+++.-+.|.+.+..+ ..++.++.+|.||
T Consensus 74 ~~~~~----~~~~~~~~~~~~~~~~~l~~~l~e~gv~--v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaT 146 (428)
T PF12831_consen 74 PQEDR----YGWVSNVPFDPEVFKAVLDEMLAEAGVE--VLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDAT 146 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc----cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccc-ccccccccccccc
Confidence 00000 00000 1223355666777777778898 999999999998764444555544222 3689999999999
Q ss_pred CC
Q 018550 163 GH 164 (354)
Q Consensus 163 G~ 164 (354)
|.
T Consensus 147 G~ 148 (428)
T PF12831_consen 147 GD 148 (428)
T ss_dssp --
T ss_pred cc
Confidence 94
No 161
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.02 E-value=8e-10 Score=88.58 Aligned_cols=138 Identities=22% Similarity=0.178 Sum_probs=73.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccc-cccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE-LMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (354)
.+||+||||||+|++||+.|++.|++|.+||++..+||..... ..+++.+..+.+.. ...-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~G------------------g~lf~~iVVq~~a~~iL~e 78 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGG------------------GMLFNKIVVQEEADEILDE 78 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-------------------CTT---EEEETTTHHHHHH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccc------------------ccccchhhhhhhHHHHHHh
Confidence 4799999999999999999999999999999988887654331 11222222222111 0011
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE-EEEEee------cC-CceEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRK------KD-DVVEE 152 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~------g~-~~~~~ 152 (354)
.+.++... .......+..++...+...+-+.|.+ +...+.|.++...+++.. .+..+- +- -....
T Consensus 79 lgi~y~~~-----~~g~~v~d~~~~~s~L~s~a~~aGak--ifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~ 151 (230)
T PF01946_consen 79 LGIPYEEY-----GDGYYVADSVEFTSTLASKAIDAGAK--IFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLT 151 (230)
T ss_dssp HT---EE------SSEEEES-HHHHHHHHHHHHHTTTEE--EEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EE
T ss_pred CCceeEEe-----CCeEEEEcHHHHHHHHHHHHhcCCCE--EEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcce
Confidence 12222211 00001123356666666666557887 888899999887652111 111111 00 01258
Q ss_pred EEeCEEEEeeCC
Q 018550 153 ETFDAVVVCNGH 164 (354)
Q Consensus 153 ~~~d~vIlAtG~ 164 (354)
+++++||-|||+
T Consensus 152 i~ak~ViDaTGH 163 (230)
T PF01946_consen 152 IRAKVVIDATGH 163 (230)
T ss_dssp EEESEEEE---S
T ss_pred EEEeEEEeCCCC
Confidence 999999999997
No 162
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.02 E-value=4.1e-09 Score=101.38 Aligned_cols=166 Identities=17% Similarity=0.115 Sum_probs=87.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCC----Ccc-cccccccch
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNR----YPV-HSSLYKSLR 70 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~----~~~-~~~~~~~~~ 70 (354)
+.+|+||||||+|+++|..|++. |++|+|||+.+... ......++.. ...+|+...- ... ....|..-.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 46899999999999999999995 99999999975431 1111111000 0111111000 000 000000000
Q ss_pred hccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC--CcEEEEEeec--
Q 018550 71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKK-- 146 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~~v~~~~g-- 146 (354)
...........+..... ..........++..+.+.+.+.+.+.+....+.+++++++++.+++ ...++++++.
T Consensus 112 -~~~~~i~r~~~~~~~~~--~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~ 188 (634)
T PRK08294 112 -ADPSTIVRTGRVQDTED--GLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG 188 (634)
T ss_pred -ccccceeccccccccCC--CCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence 00000000000000000 0000011123456678888888877665323788999999987642 3467777643
Q ss_pred --CCceEEEEeCEEEEeeCCCCCccc
Q 018550 147 --DDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 147 --~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.++++++|+||.|+|..|.-|.
T Consensus 189 ~~~g~~~tv~A~~lVGaDGa~S~VR~ 214 (634)
T PRK08294 189 EHEGEEETVRAKYVVGCDGARSRVRK 214 (634)
T ss_pred CCCCceEEEEeCEEEECCCCchHHHH
Confidence 233468999999999998777664
No 163
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.02 E-value=9.3e-09 Score=93.42 Aligned_cols=99 Identities=24% Similarity=0.364 Sum_probs=78.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~----------------------------------------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL----------------------------------------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh-----------------------------------------
Confidence 689999999999999999999999999999865431000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
++ ..+...+.+.+++.+++ +.+++++.++..++ +.+.+.+.++. ++.+|.||+|+
T Consensus 181 ----------------~~--~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vI~a~ 235 (377)
T PRK04965 181 ----------------MP--PEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTD-SGIRATLDSGR----SIEVDAVIAAA 235 (377)
T ss_pred ----------------CC--HHHHHHHHHHHHhCCCE--EEECCeEEEEEccC-CEEEEEEcCCc----EEECCEEEECc
Confidence 00 45667777888888988 89999999998765 66777777664 89999999999
Q ss_pred CCCCCcc
Q 018550 163 GHFSVPR 169 (354)
Q Consensus 163 G~~s~~~ 169 (354)
| ..|+
T Consensus 236 G--~~p~ 240 (377)
T PRK04965 236 G--LRPN 240 (377)
T ss_pred C--CCcc
Confidence 9 4554
No 164
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.00 E-value=5.4e-09 Score=95.09 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
....+...+.+.+.+.+++ ++.+++|+++...+ +.+.+.+.++ ++.+|.||+|+|.|+....+
T Consensus 147 ~p~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 147 RPELAIKAHLRLAREAGAE--LLFNEPVTAIEADG-DGVTVTTADG-----TYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred cHHHHHHHHHHHHHHCCCE--EECCCEEEEEEeeC-CeEEEEeCCC-----EEEeeEEEEecCcchhhhcc
Confidence 3466667677777777888 89999999999876 6777777654 68999999999987654433
No 165
>PRK06996 hypothetical protein; Provisional
Probab=99.00 E-value=3.4e-09 Score=97.00 Aligned_cols=150 Identities=14% Similarity=0.106 Sum_probs=84.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC----CcEEEEeeCCCccce-----eecCCCCC--CCCCCCCCCCCcccccccccch
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGEQVGGS-----WIYTSETE--SDPLGVDPNRYPVHSSLYKSLR 70 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g----~~v~lie~~~~~gg~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 70 (354)
.++|+||||||+|+++|..|+++| ++|+|+|+.+..... ...++... ...+++-+.. ...+..+.
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~----~~~~~~~~ 86 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPAD----ATPIEHIH 86 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhc----CCcccEEE
Confidence 579999999999999999999987 479999996432100 00000000 0111111110 00000000
Q ss_pred hccccccccccCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 71 VNLPRELMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.... ...+...+..... ...... ...+..+.+.+.+.+...+++ +.+++++++++.+. +.++++..++++
T Consensus 87 ~~~~-~~~g~~~~~~~~~----~~~~~g~~v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~-~~v~v~~~~~~g- 157 (398)
T PRK06996 87 VSQR-GHFGRTLIDRDDH----DVPALGYVVRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDA-DGVTLALGTPQG- 157 (398)
T ss_pred EecC-CCCceEEeccccc----CCCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecC-CeEEEEECCCCc-
Confidence 0000 0000000000000 000001 134578889999888888877 89999999998776 778888775533
Q ss_pred eEEEEeCEEEEeeCC
Q 018550 150 VEEETFDAVVVCNGH 164 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~ 164 (354)
.+++.+|+||.|+|.
T Consensus 158 ~~~i~a~lvIgADG~ 172 (398)
T PRK06996 158 ARTLRARIAVQAEGG 172 (398)
T ss_pred ceEEeeeEEEECCCC
Confidence 247999999999995
No 166
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.00 E-value=1.7e-09 Score=100.12 Aligned_cols=162 Identities=12% Similarity=0.125 Sum_probs=86.2
Q ss_pred CeEEEEcCChHHHHHHHHHHH----cCCcEEEEeeCCCccce---eecCCCC-CCCCCCCCCCC--Ccccccccccchhc
Q 018550 3 RHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGS---WIYTSET-ESDPLGVDPNR--YPVHSSLYKSLRVN 72 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~----~g~~v~lie~~~~~gg~---~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 72 (354)
+||+||||||+|+++|..|++ .|++|+|||+.+.+... +...... ...-.++.|.. .+..-..++.+...
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999999 89999999995422110 0000000 00000111110 00001112222110
Q ss_pred --cccccccccCCCC-CccCCCCCCCCC---CCCCHHHHHHHHHHHHHHhC---CcceEEeceEEEEEEEe------CCC
Q 018550 73 --LPRELMGFQAYPF-VARNYEGSVDLR---RYPGHEEVLRYLQNFAREFG---VDQVVRLHTEVLNARLV------ESN 137 (354)
Q Consensus 73 --~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~---~~~~v~~~~~v~~i~~~------~~~ 137 (354)
.+...+.+.+-.. ............ ....+..+.+.+.+.+.+.+ ++ ++++++|++++.. ++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~~~~~~~~ 158 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSKYPNDNSN 158 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccccccCCCC
Confidence 0000000000000 000000000001 11345677788888777664 56 8999999999753 125
Q ss_pred cEEEEEeecCCceEEEEeCEEEEeeCCCCCccc
Q 018550 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 138 ~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
.++++..+++ ++.+|+||.|+|.+|.-+.
T Consensus 159 ~v~v~~~~g~----~i~a~llVgADG~~S~vR~ 187 (437)
T TIGR01989 159 WVHITLSDGQ----VLYTKLLIGADGSNSNVRK 187 (437)
T ss_pred ceEEEEcCCC----EEEeeEEEEecCCCChhHH
Confidence 6777777764 8999999999998776664
No 167
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.00 E-value=7.1e-09 Score=97.54 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=87.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCC---C----CCCCC--CCCCc----------cc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---D----PLGVD--PNRYP----------VH 62 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~---~----~~~~~--~~~~~----------~~ 62 (354)
.+||||||+|.+|+++|..+++.|.+|+|+||.+..||......+..+ . ..+.. ++..+ .+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 468999999999999999999999999999998877765433221110 0 00000 00000 00
Q ss_pred ccccccchhcccccccccc--CCCCCccC-CCCC-C---C--CCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEE
Q 018550 63 SSLYKSLRVNLPRELMGFQ--AYPFVARN-YEGS-V---D--LRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133 (354)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-~---~--~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 133 (354)
..+...+..+.+.....+. +.++.... .... . . .........+...+.+.+.+.+++ +.++++++++..
T Consensus 141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~ 218 (506)
T PRK06481 141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIP--LFVNADVTKITE 218 (506)
T ss_pred HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCe--EEeCCeeEEEEe
Confidence 0011111111111000000 11111000 0000 0 0 001112245777778888888888 999999999986
Q ss_pred eCCCcE-EEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 134 VESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 134 ~~~~~~-~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
++ +.. .+.....++....+.++.||+|+|.+..
T Consensus 219 ~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 219 KD-GKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred cC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 54 432 2333322223357899999999996543
No 168
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.00 E-value=9.4e-09 Score=92.39 Aligned_cols=60 Identities=23% Similarity=0.296 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
.++...+.+.+.+.|.. ++++++|+.|++.+++.+.+.+.+|+ ++++++.||.|.|..+.
T Consensus 153 ~~~t~~l~e~a~~~g~~--i~ln~eV~~i~~~~dg~~~~~~~~g~---~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 153 GELTRALAEEAQANGVE--LRLNTEVTGIEKQSDGVFVLNTSNGE---ETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHHcCCE--EEecCeeeEEEEeCCceEEEEecCCc---EEEEeeEEEECCchhHH
Confidence 56777777788888988 99999999999988345677777764 12999999999997543
No 169
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.97 E-value=1.3e-08 Score=92.91 Aligned_cols=104 Identities=23% Similarity=0.286 Sum_probs=84.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||||+.|+..|..+++.|.+|+|+|+.+.+-
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL------------------------------------------- 209 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL------------------------------------------- 209 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------------------
Confidence 5789999999999999999999999999999987541
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
|..+ .++.+.+.+.+++.++. +.+++++..++..+ +...+..+++.+. .+.+|.|++|
T Consensus 210 --p~~D---------------~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~-~~v~v~~~~g~~~--~~~ad~vLvA 267 (454)
T COG1249 210 --PGED---------------PEISKELTKQLEKGGVK--ILLNTKVTAVEKKD-DGVLVTLEDGEGG--TIEADAVLVA 267 (454)
T ss_pred --CcCC---------------HHHHHHHHHHHHhCCeE--EEccceEEEEEecC-CeEEEEEecCCCC--EEEeeEEEEc
Confidence 0000 78889999988887788 89999999998876 4477777776532 7889999999
Q ss_pred eCCCCCcccCC
Q 018550 162 NGHFSVPRLAQ 172 (354)
Q Consensus 162 tG~~s~~~~p~ 172 (354)
+| .+|+...
T Consensus 268 iG--R~Pn~~~ 276 (454)
T COG1249 268 IG--RKPNTDG 276 (454)
T ss_pred cC--CccCCCC
Confidence 99 6666553
No 170
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.96 E-value=6.8e-08 Score=90.41 Aligned_cols=105 Identities=25% Similarity=0.297 Sum_probs=81.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 221 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA----------------------------------------- 221 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-----------------------------------------
Confidence 368999999999999999999999999999986533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+.+.+++ ++.+++|.+++.++ +...+...++++++.++++|.|++|
T Consensus 222 -----~d--------------~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~~~g~~~~i~~D~vl~a 279 (475)
T PRK06327 222 -----AD--------------EQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGG-KGVSVAYTDADGEAQTLEVDKLIVS 279 (475)
T ss_pred -----CC--------------HHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcC-CEEEEEEEeCCCceeEEEcCEEEEc
Confidence 00 56667777777778888 99999999998765 5556665554343457999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 280 ~G--~~p~~~ 287 (475)
T PRK06327 280 IG--RVPNTD 287 (475)
T ss_pred cC--CccCCC
Confidence 99 677655
No 171
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.96 E-value=3.6e-08 Score=92.29 Aligned_cols=105 Identities=20% Similarity=0.259 Sum_probs=77.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+.. .
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~---~-------------------------------------- 218 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP---T-------------------------------------- 218 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC---c--------------------------------------
Confidence 36899999999999999999999999999998753310 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE-EEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~~~~d~vIl 160 (354)
+ . .++.+.+.+.+++.|++ ++++++|.++....++...+ ...++. ..++.+|.||+
T Consensus 219 -~----~--------------~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~~~~~~~g~--~~~i~~D~vi~ 275 (472)
T PRK05976 219 -E----D--------------AELSKEVARLLKKLGVR--VVTGAKVLGLTLKKDGGVLIVAEHNGE--EKTLEADKVLV 275 (472)
T ss_pred -C----C--------------HHHHHHHHHHHHhcCCE--EEeCcEEEEEEEecCCCEEEEEEeCCc--eEEEEeCEEEE
Confidence 0 0 56677777788888998 99999999998521133333 333432 34799999999
Q ss_pred eeCCCCCcccCC
Q 018550 161 CNGHFSVPRLAQ 172 (354)
Q Consensus 161 AtG~~s~~~~p~ 172 (354)
|+| ..|+...
T Consensus 276 a~G--~~p~~~~ 285 (472)
T PRK05976 276 SVG--RRPNTEG 285 (472)
T ss_pred eeC--CccCCCC
Confidence 999 6666543
No 172
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.95 E-value=2.9e-08 Score=92.82 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=80.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+.. .
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---~-------------------------------------- 208 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP---G-------------------------------------- 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC---C--------------------------------------
Confidence 36899999999999999999999999999998754310 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.+++ ++++++|.+++.++ +...+...++. ..++.+|.||+|
T Consensus 209 -----~~--------------~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~g~--~~~i~~D~vi~a 264 (461)
T TIGR01350 209 -----ED--------------AEVSKVVAKALKKKGVK--ILTNTKVTAVEKND-DQVVYENKGGE--TETLTGEKVLVA 264 (461)
T ss_pred -----CC--------------HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEeCCc--EEEEEeCEEEEe
Confidence 00 55667777778888988 99999999998765 55666654442 247899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 265 ~G--~~p~~~ 272 (461)
T TIGR01350 265 VG--RKPNTE 272 (461)
T ss_pred cC--CcccCC
Confidence 99 666654
No 173
>PRK07121 hypothetical protein; Validated
Probab=98.94 E-value=1.4e-08 Score=95.57 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cEEEEEeecCCceEEEEe-CEEEEeeCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETF-DAVVVCNGHFS 166 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~~-d~vIlAtG~~s 166 (354)
...+...+.+.+++.+++ +.++++++++..++++ ...+...+. +....+.+ +.||+|||.++
T Consensus 176 g~~~~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~-~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQ--IRYDTRATRLIVDDDGRVVGVEARRY-GETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCCEEEEEEEeC-CcEEEEEeCCEEEECCCCcC
Confidence 456778888888888888 9999999999876423 233444332 22357888 99999999755
No 174
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.94 E-value=1.8e-08 Score=92.17 Aligned_cols=100 Identities=23% Similarity=0.238 Sum_probs=78.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+......
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~-------------------------------------- 185 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAP-------------------------------------- 185 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcC--------------------------------------
Confidence 368999999999999999999999999999987643211100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
..+..++.+.+.+.+++ ++++++++++.. + +...+.+.+++ ++.+|.||+|
T Consensus 186 ---------------------~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~-~-~~~~v~l~~g~----~i~aD~Vv~a 236 (396)
T PRK09754 186 ---------------------PPVQRYLLQRHQQAGVR--ILLNNAIEHVVD-G-EKVELTLQSGE----TLQADVVIYG 236 (396)
T ss_pred ---------------------HHHHHHHHHHHHHCCCE--EEeCCeeEEEEc-C-CEEEEEECCCC----EEECCEEEEC
Confidence 55667778888888998 999999999976 3 45666666664 7999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|+.
T Consensus 237 ~G--~~pn~ 243 (396)
T PRK09754 237 IG--ISAND 243 (396)
T ss_pred CC--CChhh
Confidence 99 55553
No 175
>PLN02985 squalene monooxygenase
Probab=98.93 E-value=1.5e-08 Score=95.11 Aligned_cols=163 Identities=16% Similarity=0.159 Sum_probs=81.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc----eeecCCCCC-CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG----SWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
.+||+|||||++|+++|..|++.|++|+|+|+...... .+...++.. ...+|+...-.-........+..... +
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~-g 121 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKD-G 121 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEEC-C
Confidence 46899999999999999999999999999999643211 100000000 01111111100000000000000000 0
Q ss_pred cccccCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 77 LMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
......++.... ...... .....+.++.+.+.+.+.+. +++ +.. .+++++..+++....++....+++..++.
T Consensus 122 ~~~~~~~~~~~~--~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~--i~~-gtvv~li~~~~~v~gV~~~~~dG~~~~~~ 196 (514)
T PLN02985 122 KEAVAPFPVDNN--NFPYEPSARSFHNGRFVQRLRQKASSLPNVR--LEE-GTVKSLIEEKGVIKGVTYKNSAGEETTAL 196 (514)
T ss_pred EEEEEeCCCCCc--CCCcccceeeeecHHHHHHHHHHHHhCCCeE--EEe-eeEEEEEEcCCEEEEEEEEcCCCCEEEEE
Confidence 000001111000 000000 01234578888888888765 566 554 46777765542222355443333345678
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|.||.|+|.+|.-+.
T Consensus 197 AdLVVgADG~~S~vR~ 212 (514)
T PLN02985 197 APLTVVCDGCYSNLRR 212 (514)
T ss_pred CCEEEECCCCchHHHH
Confidence 9999999998776554
No 176
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.93 E-value=6.5e-08 Score=89.73 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=77.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+.+|..|++.|.+|+++++.+.+....
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 196 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE---------------------------------------- 196 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC----------------------------------------
Confidence 4689999999999999999999999999999975431000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
..++.+.+.+.+++.|++ ++++++|++++.++ +...+.. ++ .++.+|.||+|
T Consensus 197 --------------------~~~~~~~~~~~l~~~GI~--i~~~~~V~~i~~~~-~~v~v~~-~g----~~i~~D~viva 248 (438)
T PRK07251 197 --------------------EPSVAALAKQYMEEDGIT--FLLNAHTTEVKNDG-DQVLVVT-ED----ETYRFDALLYA 248 (438)
T ss_pred --------------------CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEecC-CEEEEEE-CC----eEEEcCEEEEe
Confidence 055667777788888998 99999999998754 4444443 23 27999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 249 ~G--~~p~~~ 256 (438)
T PRK07251 249 TG--RKPNTE 256 (438)
T ss_pred eC--CCCCcc
Confidence 99 666654
No 177
>PLN02661 Putative thiazole synthesis
Probab=98.92 E-value=1.4e-08 Score=88.78 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=77.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
..||+|||||++|+.+|+.|++. |.+|+++|+...+||.........+ . ...... ...+.. -
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~-~-------~vv~~~-a~e~Le--------E 154 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFS-A-------MVVRKP-AHLFLD--------E 154 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCccccc-c-------cccccH-HHHHHH--------H
Confidence 46899999999999999999986 8999999998877663332111000 0 000000 000000 0
Q ss_pred cCCCCCccCCCCCCCCCCCC---CHHHHHHHHHHHH-HHhCCcceEEeceEEEEEEEeCCCcEEEEE------eecCC--
Q 018550 81 QAYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESNKWKVKS------RKKDD-- 148 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~------~~g~~-- 148 (354)
.+.++... ..|+ +...+...+.+.+ .+.+++ +..++.+.++..+++....+.+ .++..
T Consensus 155 lGV~fd~~--------dgy~vv~ha~e~~stLi~ka~~~~gVk--I~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s 224 (357)
T PLN02661 155 LGVPYDEQ--------ENYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQS 224 (357)
T ss_pred cCCCcccC--------CCeeEecchHHHHHHHHHHHHhcCCCE--EEeCeEeeeEEecCCEEEEEEeecchhhhccCCCC
Confidence 01222110 0111 1134444555444 345777 8889999999876533333332 12211
Q ss_pred --ceEEEEeCEEEEeeCC
Q 018550 149 --VVEEETFDAVVVCNGH 164 (354)
Q Consensus 149 --~~~~~~~d~vIlAtG~ 164 (354)
....+.+++||+|||+
T Consensus 225 ~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 225 CMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred ccceeEEECCEEEEcCCC
Confidence 1247899999999995
No 178
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.92 E-value=5.3e-09 Score=97.43 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=83.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC--CCCCCCC----------cccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNRY----------PVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~~----------~~~~~~~~~~ 69 (354)
++||+|||+|.||++||..+++.|.+|+|+||.+..+.++....++. ... ...++.. ..+......+
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~-~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 79 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIA-FPILEGDSIRAHVLDTIRAGKYINDEEVVWNV 79 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcc-cccCCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 47999999999999999999999999999999754332222211111 000 0001100 0011111111
Q ss_pred hhcccccccccc--CCCCCccC-CCCCCCCCC----CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE-E
Q 018550 70 RVNLPRELMGFQ--AYPFVARN-YEGSVDLRR----YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-V 141 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v 141 (354)
..+.+.....+. +.++.... ......... -.....+.+.+.+.+.+.+++ +..+ .++.+..++ +.+. +
T Consensus 80 ~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~-~v~~l~~~~-g~v~Gv 155 (466)
T PRK08401 80 ISKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVN--FIRG-FAEELAIKN-GKAYGV 155 (466)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCE--EEEe-EeEEEEeeC-CEEEEE
Confidence 111211111111 22221110 000000000 012356888888888888888 6654 788887654 4432 3
Q ss_pred EEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 142 KSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 142 ~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.. ++ ..+.++.||+|||.++..
T Consensus 156 ~~-~g----~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 156 FL-DG----ELLKFDATVIATGGFSGL 177 (466)
T ss_pred EE-CC----EEEEeCeEEECCCcCcCC
Confidence 33 32 268999999999976654
No 179
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.91 E-value=3.8e-08 Score=90.60 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC-ceEEEEeCEEEEeeCCCCCc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~-~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+...+.+.+.+.|++ ++.+++|++++.++ +.+++.+.++.+ +..++.+|.||+|+|.|+..
T Consensus 197 ~~~~~~l~~~a~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~ 260 (410)
T PRK12409 197 HKFTTGLAAACARLGVQ--FRYGQEVTSIKTDG-GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRA 260 (410)
T ss_pred HHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCccceEecCEEEECCCcChHH
Confidence 56677777888888998 89999999998766 667776554321 01368999999999987643
No 180
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.91 E-value=3.3e-08 Score=92.39 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=81.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 210 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------------------------------------- 210 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-----------------------------------------
Confidence 368999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+.+.+++ ++++++|.+++.++ +.+.+...++ +...++.+|.||+|
T Consensus 211 -----~~--------------~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~g-g~~~~i~~D~vi~a 267 (462)
T PRK06416 211 -----ED--------------KEISKLAERALKKRGIK--IKTGAKAKKVEQTD-DGVTVTLEDG-GKEETLEADYVLVA 267 (462)
T ss_pred -----CC--------------HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEEeC-CeeEEEEeCEEEEe
Confidence 00 56677778888888988 99999999998766 5666666554 22347899999999
Q ss_pred eCCCCCcccCC
Q 018550 162 NGHFSVPRLAQ 172 (354)
Q Consensus 162 tG~~s~~~~p~ 172 (354)
+| ..|....
T Consensus 268 ~G--~~p~~~~ 276 (462)
T PRK06416 268 VG--RRPNTEN 276 (462)
T ss_pred eC--CccCCCC
Confidence 99 6666543
No 181
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=1.3e-08 Score=97.84 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=86.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC-----CCCCC----------Cccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG-----VDPNR----------YPVHSSLY 66 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~-----~~~~~----------~~~~~~~~ 66 (354)
..||+|||+|.||++||..+++.|.+|+|+||....++......+......+ ..++. .+.+..+.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~v 87 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRMA 87 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHHH
Confidence 4689999999999999999999999999999986554432222221110000 01110 01111111
Q ss_pred ccchhcccccccccc--CCCCCccC---CC-CCCCCCCC--------CCHHHHHHHHHHHHHHh--------C-----Cc
Q 018550 67 KSLRVNLPRELMGFQ--AYPFVARN---YE-GSVDLRRY--------PGHEEVLRYLQNFAREF--------G-----VD 119 (354)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~~~~~~---~~-~~~~~~~~--------~~~~~~~~~l~~~~~~~--------~-----~~ 119 (354)
..+..+.+..+..+. +.++.... .. .......+ .+...+...+.+.+.+. | ++
T Consensus 88 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~ 167 (626)
T PRK07803 88 ELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIK 167 (626)
T ss_pred HHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCceE
Confidence 122222222222111 22222110 00 00001111 12356777777777665 5 66
Q ss_pred ceEEeceEEEEEEEeCCCcE-EEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 120 QVVRLHTEVLNARLVESNKW-KVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 120 ~~v~~~~~v~~i~~~~~~~~-~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+..++.++++..++ +.. .+...+ .++....+.++.||+|||.+..
T Consensus 168 --i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 168 --VFAECTITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred --EEeCCEEEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence 89999999998765 432 222211 2233457899999999996443
No 182
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.90 E-value=1.7e-08 Score=92.03 Aligned_cols=60 Identities=30% Similarity=0.310 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
+...+.+.+.+.+...+++ +..+++|+++..++ +.+.+.+.++ ++.+|.||+|+|.|+..
T Consensus 143 ~p~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~-~~~~v~~~~~-----~i~a~~vV~aaG~~~~~ 202 (380)
T TIGR01377 143 YAEKALRALQELAEAHGAT--VRDGTKVVEIEPTE-LLVTVKTTKG-----SYQANKLVVTAGAWTSK 202 (380)
T ss_pred cHHHHHHHHHHHHHHcCCE--EECCCeEEEEEecC-CeEEEEeCCC-----EEEeCEEEEecCcchHH
Confidence 3467788888888888988 88999999998766 6677776543 68999999999976543
No 183
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.89 E-value=2e-08 Score=97.77 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
....+...+.+.+.+ |++ ++++++|+++...+ +.|.|.+.++. .+.+|.||+|+|.|+..
T Consensus 406 ~p~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 406 CPAELCRALLALAGQ-QLT--IHFGHEVARLERED-DGWQLDFAGGT----LASAPVVVLANGHDAAR 465 (662)
T ss_pred CHHHHHHHHHHhccc-CcE--EEeCCEeeEEEEeC-CEEEEEECCCc----EEECCEEEECCCCCccc
Confidence 345777777777777 787 88999999998876 77888776653 56899999999987653
No 184
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.89 E-value=6.8e-09 Score=98.81 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
.+.++.+.|.+. .+.. .++++++|++++..+ +.+++++.++. ++.+|.||.|+|.+|.-+..
T Consensus 192 ~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~-d~VtV~~~dG~----ti~aDlVVGADG~~S~vR~~ 253 (668)
T PLN02927 192 SRMTLQQILARA---VGED-VIRNESNVVDFEDSG-DKVTVVLENGQ----RYEGDLLVGADGIWSKVRNN 253 (668)
T ss_pred eHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC-CEEEEEECCCC----EEEcCEEEECCCCCcHHHHH
Confidence 456666666433 3333 267888999998876 77888887764 78999999999988866543
No 185
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.89 E-value=7.3e-08 Score=89.83 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|++|+.+|..|.+.|.+|+++++.+.+....
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~---------------------------------------- 209 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE---------------------------------------- 209 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccc----------------------------------------
Confidence 3689999999999999999999999999999865331000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
..++.+.+.+.+.+.+++ +++++++.+++.++ ....+.. ++ ...++.+|.||+|
T Consensus 210 --------------------d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~-~~v~~~~-~g--~~~~i~~D~vivA 263 (458)
T PRK06912 210 --------------------DEDIAHILREKLENDGVK--IFTGAALKGLNSYK-KQALFEY-EG--SIQEVNAEFVLVS 263 (458)
T ss_pred --------------------cHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcC-CEEEEEE-CC--ceEEEEeCEEEEe
Confidence 056677778888888998 99999999998654 4344432 22 2247899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 264 ~G--~~p~~~ 271 (458)
T PRK06912 264 VG--RKPRVQ 271 (458)
T ss_pred cC--CccCCC
Confidence 99 666654
No 186
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.89 E-value=2.7e-08 Score=93.36 Aligned_cols=161 Identities=20% Similarity=0.172 Sum_probs=87.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC--CCCCCC----------Ccccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~ 69 (354)
..||+|||+|.||++||..+++.|. |+|+||.+..++......+...... ...++. .+.+......+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4689999999999999999999997 9999998665554333222110000 011110 01111111122
Q ss_pred hhcccccccccc--CCCCCccCC--------CCCCCCCCC----CCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEe
Q 018550 70 RVNLPRELMGFQ--AYPFVARNY--------EGSVDLRRY----PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~~----~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~ 134 (354)
....+..+..+. +.++..... ........+ .+...+...+.+.+.+ .+++ +..++.++++..+
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeecc
Confidence 222111111111 122211100 000000000 1235777888887776 5788 9999999999875
Q ss_pred CCCcE-EEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 135 ESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 135 ~~~~~-~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+ +.. .+...+. +....+.++.||+|||.++.
T Consensus 159 ~-g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 T-GRVVGVWVWNR-ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred C-CEEEEEEEEEC-CcEEEEEcCEEEECCCcccC
Confidence 5 433 2444442 22347899999999997664
No 187
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.88 E-value=2.3e-08 Score=95.92 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=90.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC----CCCCC----------Ccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG----VDPNR----------YPVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~----~~~~~----------~~~~~~~~~ 67 (354)
..||+|||+|.||++||..+++.|.+|+|+||....++......+..+...+ ..++. .+.+.....
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~ 108 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ 108 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 3589999999999999999999999999999987655544333222111101 01110 011111112
Q ss_pred cchhcccccccccc--CCCCCccCC---C---CCCCCC------CC--------CCHHHHHHHHHHHHHHhCCcceEEec
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARNY---E---GSVDLR------RY--------PGHEEVLRYLQNFAREFGVDQVVRLH 125 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~---~---~~~~~~------~~--------~~~~~~~~~l~~~~~~~~~~~~v~~~ 125 (354)
.+..+.+.....+. +.++..... . ...... .. .+...+...+.+.+.+.+++ +..+
T Consensus 109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~ 186 (617)
T PTZ00139 109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCN--FFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCE--EEec
Confidence 22222222211111 222211000 0 000000 00 12357888888888888888 9999
Q ss_pred eEEEEEEEeCCCc-EEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 126 TEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 126 ~~v~~i~~~~~~~-~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
+.++++..++++. ..+...+ .+++...+.++.||+|||.+...
T Consensus 187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 9999988733232 2233322 23345688999999999975543
No 188
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.88 E-value=1.4e-08 Score=90.22 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=74.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEE-eeCCCccceeecCCCCCCCCCCCCCCCCcc-cccccccchhc-------cc
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVY-EKGEQVGGSWIYTSETESDPLGVDPNRYPV-HSSLYKSLRVN-------LP 74 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~li-e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~ 74 (354)
||+|||||+||+.||.++++.|.+|.|+ .+.+.++. + .|.|...-. ...+-..+... ..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~-~-----------~Cnpsigg~~kg~L~~Eidalgg~m~~~aD 68 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGE-M-----------SCNPSIGGIAKGHLVREIDALGGLMGRAAD 68 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--------------SSSSEEESTTHHHHHHHHHHTT-SHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccc-c-----------cchhhhccccccchhHHHhhhhhHHHHHHh
Confidence 7999999999999999999999999999 33333321 1 122211000 00000000000 00
Q ss_pred cccccccCCCCCccCCCCCCC-CCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 75 RELMGFQAYPFVARNYEGSVD-LRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
.....+........ ...+ .....++..+.+++++.+... ++. + .+.+|+++..+++.-..|.+.+|. .
T Consensus 69 ~~~i~~~~lN~skG---pav~a~r~qvDr~~y~~~~~~~l~~~~nl~--i-~~~~V~~l~~e~~~v~GV~~~~g~----~ 138 (392)
T PF01134_consen 69 ETGIHFRMLNRSKG---PAVHALRAQVDRDKYSRAMREKLESHPNLT--I-IQGEVTDLIVENGKVKGVVTKDGE----E 138 (392)
T ss_dssp HHEEEEEEESTTS----GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE--E-EES-EEEEEECTTEEEEEEETTSE----E
T ss_pred HhhhhhhcccccCC---CCccchHhhccHHHHHHHHHHHHhcCCCeE--E-EEcccceEEecCCeEEEEEeCCCC----E
Confidence 00000000000000 0000 011245688899999888773 555 4 568999999876455667777664 8
Q ss_pred EEeCEEEEeeCC
Q 018550 153 ETFDAVVVCNGH 164 (354)
Q Consensus 153 ~~~d~vIlAtG~ 164 (354)
+.+|.||+|||.
T Consensus 139 ~~a~~vVlaTGt 150 (392)
T PF01134_consen 139 IEADAVVLATGT 150 (392)
T ss_dssp EEECEEEE-TTT
T ss_pred EecCEEEEeccc
Confidence 999999999995
No 189
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.88 E-value=1.1e-07 Score=88.93 Aligned_cols=105 Identities=25% Similarity=0.249 Sum_probs=79.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~---------------------------------------- 211 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE---------------------------------------- 211 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc----------------------------------------
Confidence 3689999999999999999999999999999865331000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+.+++.+++ ++++++|+++..++ +...+.....++...++++|.||+|
T Consensus 212 ------d--------------~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vi~a 268 (466)
T PRK07818 212 ------D--------------AEVSKEIAKQYKKLGVK--ILTGTKVESIDDNG-SKVTVTVSKKDGKAQELEADKVLQA 268 (466)
T ss_pred ------C--------------HHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CeEEEEEEecCCCeEEEEeCEEEEC
Confidence 0 55667788888888999 99999999998754 5555555411222347999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 269 ~G--~~pn~~ 276 (466)
T PRK07818 269 IG--FAPRVE 276 (466)
T ss_pred cC--cccCCC
Confidence 99 666654
No 190
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.87 E-value=8.3e-09 Score=95.17 Aligned_cols=162 Identities=27% Similarity=0.383 Sum_probs=86.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCC---C----CCC--CCC----------CCccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESD---P----LGV--DPN----------RYPVHSS 64 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~---~----~~~--~~~----------~~~~~~~ 64 (354)
||||||+|.||++||..|+++|.+|+|+||.+..|+......+.... + .+. .+. ....+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 79999999999999999999999999999998877654443222100 0 011 000 0000111
Q ss_pred ccccchhcccccccccc--CCCCCc--------cCCCC-CCC------C-----CCCCCHHHHHHHHHHHHHHhCCcceE
Q 018550 65 LYKSLRVNLPRELMGFQ--AYPFVA--------RNYEG-SVD------L-----RRYPGHEEVLRYLQNFAREFGVDQVV 122 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~-~~~------~-----~~~~~~~~~~~~l~~~~~~~~~~~~v 122 (354)
+...+..+.+.....+. ..++.. ..... ... . ........+...+.+.+++.+++ +
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~--i 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVD--I 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCee--e
Confidence 11111111111100000 111111 00000 000 0 01124577888999999999988 9
Q ss_pred EeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 123 RLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 123 ~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+++++++++..+++....+...+ .++....+.++.||+|||.+..
T Consensus 159 ~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred eccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 99999999999763223344442 3344578899999999997554
No 191
>PRK06116 glutathione reductase; Validated
Probab=98.87 E-value=4.8e-08 Score=90.93 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=80.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---~-------------------------------------- 205 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR---G-------------------------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc---c--------------------------------------
Confidence 36899999999999999999999999999998653210 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.+++ ++++++|.+++.++++.+.+.+.++. ++.+|.||+|
T Consensus 206 -~----~--------------~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~g~~~v~~~~g~----~i~~D~Vv~a 260 (450)
T PRK06116 206 -F----D--------------PDIRETLVEEMEKKGIR--LHTNAVPKAVEKNADGSLTLTLEDGE----TLTVDCLIWA 260 (450)
T ss_pred -c----C--------------HHHHHHHHHHHHHCCcE--EECCCEEEEEEEcCCceEEEEEcCCc----EEEeCEEEEe
Confidence 0 0 56677778888888998 99999999998765233667666653 7899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 261 ~G--~~p~~~ 268 (450)
T PRK06116 261 IG--REPNTD 268 (450)
T ss_pred eC--CCcCCC
Confidence 99 666654
No 192
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.87 E-value=1.6e-08 Score=85.83 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC--CcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ 172 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~ 172 (354)
....-...+++.+.++|+. ++.+.+|..+...++ ....|.+.+|. .|.++.+|+|+|+|-...+|.
T Consensus 151 ~a~kslk~~~~~~~~~G~i--~~dg~~v~~~~~~~e~~~~v~V~Tt~gs----~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 151 NAAKSLKALQDKARELGVI--FRDGEKVKFIKFVDEEGNHVSVQTTDGS----IYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred eHHHHHHHHHHHHHHcCeE--EecCcceeeEeeccCCCceeEEEeccCC----eeecceEEEEecHHHHhhcCc
Confidence 3467778889999999998 999999999986432 45667777775 799999999999987777774
No 193
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.87 E-value=5.1e-08 Score=91.13 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 214 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFL---------------------------------------- 214 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcC----------------------------------------
Confidence 3689999999999999999999999999999875431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+.+++.+++ +..+++++++..++ +.+.++..++. ++++|.|++|
T Consensus 215 ------d--------------~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vi~a 267 (461)
T PRK05249 215 ------D--------------DEISDALSYHLRDSGVT--IRHNEEVEKVEGGD-DGVIVHLKSGK----KIKADCLLYA 267 (461)
T ss_pred ------C--------------HHHHHHHHHHHHHcCCE--EEECCEEEEEEEeC-CeEEEEECCCC----EEEeCEEEEe
Confidence 0 56677788888888988 99999999998765 56666665553 7899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| .+|+..
T Consensus 268 ~G--~~p~~~ 275 (461)
T PRK05249 268 NG--RTGNTD 275 (461)
T ss_pred ec--CCcccc
Confidence 99 566543
No 194
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.86 E-value=4.7e-08 Score=89.85 Aligned_cols=164 Identities=21% Similarity=0.228 Sum_probs=95.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC---------------------------CCCCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---------------------------SDPLGV 54 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---------------------------~~~~~~ 54 (354)
.+||+|||||+.|+.+|+.++.+|++|+|+|+++...|+-....... +-|+.+
T Consensus 12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~v 91 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHLV 91 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcccc
Confidence 57999999999999999999999999999999876655543332221 122333
Q ss_pred CCCCCccccc--------------ccccchhc---cccc-ccccc----CCCCCcc-CCC-CCCCCCCCCCHHHHHHHHH
Q 018550 55 DPNRYPVHSS--------------LYKSLRVN---LPRE-LMGFQ----AYPFVAR-NYE-GSVDLRRYPGHEEVLRYLQ 110 (354)
Q Consensus 55 ~~~~~~~~~~--------------~~~~~~~~---~~~~-~~~~~----~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~ 110 (354)
.|...++... .|+.+... .|.. ..... -.|.... ... .....+...+...+.....
T Consensus 92 ~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~a 171 (532)
T COG0578 92 EPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAANA 171 (532)
T ss_pred ccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHHH
Confidence 3333222111 11111110 0000 00000 0000000 000 0000011112245555556
Q ss_pred HHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEEeeCCCCCc
Q 018550 111 NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 111 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+...|-. +...++|+++..++ +-|.|...+.. +++.++.++.||.|||.|+..
T Consensus 172 ~~A~~~Ga~--il~~~~v~~~~re~-~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 172 RDAAEHGAE--ILTYTRVESLRREG-GVWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHhcccc--hhhcceeeeeeecC-CEEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 666677888 88889999999987 57888887744 557899999999999987654
No 195
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.86 E-value=6.3e-08 Score=90.70 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=80.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccc-ccccccchh-------ccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLRV-------NLP 74 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~ 74 (354)
+||+|||+|++|+.+|..+++.|.+|.|+|+.....+.+.. .|...... ......+.. ...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c-----------~ps~gG~a~g~l~rEidaLGG~~~~~~d 69 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSC-----------NPAIGGPAKGILVKEIDALGGLMGKAAD 69 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCc-----------cccccccccchhhhhhhcccchHHHHHH
Confidence 58999999999999999999999999999986433332211 11100000 000000000 000
Q ss_pred cccccccCCCCCccCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEe-CCCcEEEEEeecCCceE
Q 018550 75 RELMGFQAYPFVARNYEGSV-DLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLV-ESNKWKVKSRKKDDVVE 151 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~g~~~~~ 151 (354)
....++ ......-.... ......++..+...+++.+.+. ++. + ++.+|+++..+ ++....|.+.+|.
T Consensus 70 ~~~i~~---r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--I-le~~Vv~li~e~~g~V~GV~t~~G~---- 139 (617)
T TIGR00136 70 KAGLQF---RVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLS--L-FQGEVEDLILEDNDEIKGVVTQDGL---- 139 (617)
T ss_pred hhceeh---eecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEEecCCcEEEEEECCCC----
Confidence 000001 10000000000 0112335577888888888776 555 4 45678888665 3244567776664
Q ss_pred EEEeCEEEEeeCCCCC
Q 018550 152 EETFDAVVVCNGHFSV 167 (354)
Q Consensus 152 ~~~~d~vIlAtG~~s~ 167 (354)
.+.++.||+|||.|..
T Consensus 140 ~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 140 KFRAKAVIITTGTFLR 155 (617)
T ss_pred EEECCEEEEccCcccC
Confidence 7999999999998753
No 196
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.85 E-value=4.1e-08 Score=93.06 Aligned_cols=164 Identities=23% Similarity=0.206 Sum_probs=88.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC--CCCCC----------Ccccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG--VDPNR----------YPVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~~ 69 (354)
..||+|||+|.||++||..+++.|.+|+|+||....+|......+......+ ..++. ...+......+
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~ 95 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL 95 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4789999999999999999999999999999987665433332221110000 01110 01111111122
Q ss_pred hhcccccccccc--CCCCCccC---C---CCCCC--CC-CC----CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 70 RVNLPRELMGFQ--AYPFVARN---Y---EGSVD--LR-RY----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~---~---~~~~~--~~-~~----~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
..+.+.....+. +.++.... . ....+ .. .+ .....+...+.+.+.+.+++ +..++.++++..+
T Consensus 96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~~ 173 (541)
T PRK07804 96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeeeEEc
Confidence 222221111111 12221110 0 00000 00 01 13467888888888888887 8999999999876
Q ss_pred CCC-cEEEEEee----cCCceEEEEeCEEEEeeCCCCC
Q 018550 135 ESN-KWKVKSRK----KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 135 ~~~-~~~v~~~~----g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+++ ...+...+ ..+....+.++.||+|||.++.
T Consensus 174 ~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 174 GTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 422 22233321 1111357899999999997654
No 197
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=2.7e-08 Score=94.79 Aligned_cols=163 Identities=18% Similarity=0.094 Sum_probs=88.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC------CCCCCC----------Ccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL------GVDPNR----------YPVHSSL 65 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~------~~~~~~----------~~~~~~~ 65 (354)
..||+|||+|.||++||..+++.|.+|+|+||.+..++......+...... ...++. ...+...
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 469999999999999999999999999999998655544333222111000 000100 0011111
Q ss_pred cccchhcccccccccc--CCCCCccCCC----CCCCCCCC--------CCHHHHHHHHHHHHHHhCCcceEEeceEEEEE
Q 018550 66 YKSLRVNLPRELMGFQ--AYPFVARNYE----GSVDLRRY--------PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNA 131 (354)
Q Consensus 66 ~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i 131 (354)
...+..+.+.....+. +.++...... .......+ .....+...+.+.+.+.+++ +..++.++++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~~L 162 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEEEE
Confidence 1122222222111111 2222111000 00000011 12356777777777777887 8999999999
Q ss_pred EEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCC
Q 018550 132 RLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 132 ~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s 166 (354)
..+++....+...+. ++....+.++.||+|||..+
T Consensus 163 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 163 VTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 986522233444332 23345789999999999754
No 198
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.85 E-value=5.1e-08 Score=93.68 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=90.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC----CCCC----------CCccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG----VDPN----------RYPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~~~ 68 (354)
.||+|||+|.||++||..+++.|.+|+|+||....++......+..+.... ..++ ..+.+......
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~~ 130 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQY 130 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHHH
Confidence 589999999999999999999999999999986555443333221111001 0010 00111111222
Q ss_pred chhcccccccccc--CCCCCccCC---C---CCCCCCC-----------C---CCHHHHHHHHHHHHHHhCCcceEEece
Q 018550 69 LRVNLPRELMGFQ--AYPFVARNY---E---GSVDLRR-----------Y---PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~---~---~~~~~~~-----------~---~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (354)
+..+.+.....+. +.++..... . ...+... + .....+...+.+.+.+.+++ +..++
T Consensus 131 l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~~ 208 (635)
T PLN00128 131 MCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQ--FFVEY 208 (635)
T ss_pred HHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCE--EEEee
Confidence 2222322222111 222221100 0 0000000 0 12356777787777777888 88899
Q ss_pred EEEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 127 EVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 127 ~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.++++..++++ ...+...+ .+++...+.++.||+|||.++..
T Consensus 209 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 209 FALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred EEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 99998765323 23343322 23335688999999999976543
No 199
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.85 E-value=5.5e-08 Score=92.35 Aligned_cols=65 Identities=17% Similarity=0.054 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+...+...+...+.+.|.+ +.++++|+++..+++..+.+.+.+. +++..++.++.||+|+|.|+.
T Consensus 147 dp~rl~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 147 DPFRLTAANMLDAKEHGAQ--ILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 3456666666777788998 8999999999886523334555442 122357999999999998764
No 200
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=2.9e-08 Score=94.34 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=86.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC-ccceeecCCCCCCCCC--CCCCCC----------Cccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYKS 68 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~-~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~ 68 (354)
..||+|||+|.||++||..+ +.|.+|+|+||.+. .||......+..+... ...++. ...+......
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~ 85 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI 85 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence 36899999999999999999 99999999999753 3433322211110000 001110 0111111222
Q ss_pred chhcccccccccc--CCCCCccCC----CCCCCCCCCC--------CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 69 LRVNLPRELMGFQ--AYPFVARNY----EGSVDLRRYP--------GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
+..+.+.....+. +.++..... ........++ +...+...+.+.+.+.+++ +.+++.++++..+
T Consensus 86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~~ 163 (543)
T PRK06263 86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIK--ILEEVMAIKLIVD 163 (543)
T ss_pred HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEEe
Confidence 2222221111111 222211000 0000000111 2356777788777777888 9999999999876
Q ss_pred CCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 135 ESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 135 ~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
+++ ...+...+ ..+....+.++.||+|||..+
T Consensus 164 ~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 164 ENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 523 22233322 233345789999999999754
No 201
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.84 E-value=4.5e-08 Score=93.65 Aligned_cols=161 Identities=18% Similarity=0.191 Sum_probs=84.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCC---CCCCC--CCCC----------Cccccccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---DPLGV--DPNR----------YPVHSSLYKS 68 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~---~~~~~--~~~~----------~~~~~~~~~~ 68 (354)
||+|||+|.||++||..+++.|.+|+|+||....++......+... ...+. .++. ...+......
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 6999999999999999999999999999997655433222211110 00000 0000 0001111111
Q ss_pred chhcccccccccc--CCCCCccCC--------CCC-CCCCCC---CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 69 LRVNLPRELMGFQ--AYPFVARNY--------EGS-VDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~--------~~~-~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
+..+.+.....+. +.++..... ... .....+ .....+...+.+.+.+.+++ +..++.++++..+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~v~~L~~~ 158 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVS--FFNEYFALDLIHD 158 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCE--EEeccEEEEEEEe
Confidence 1111111111111 112211000 000 000001 12346777777777777888 9999999999876
Q ss_pred CCCcE-EEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 135 ESNKW-KVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 135 ~~~~~-~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+ +.. .+...+ ..+....+.++.||+|||.++.
T Consensus 159 ~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 159 D-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred C-CEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 5 433 233222 1222357899999999997554
No 202
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.83 E-value=9.5e-08 Score=89.29 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=79.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------- 205 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE----------------------------------------- 205 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-----------------------------------------
Confidence 689999999999999999999999999999875431000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++...+++.+.+.+++ ++++++|.+++.++ +...+.+.... ...++++|.||+|+
T Consensus 206 -----d--------------~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~ViiA~ 262 (463)
T TIGR02053 206 -----E--------------PEISAAVEEALAEEGIE--VVTSAQVKAVSVRG-GGKIITVEKPG-GQGEVEADELLVAT 262 (463)
T ss_pred -----C--------------HHHHHHHHHHHHHcCCE--EEcCcEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEeE
Confidence 0 55667777888888998 99999999998765 55556554311 12479999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|+..
T Consensus 263 G--~~p~~~ 269 (463)
T TIGR02053 263 G--RRPNTD 269 (463)
T ss_pred C--CCcCCC
Confidence 9 666655
No 203
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=5.8e-08 Score=93.06 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=88.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--------------Cccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--------------YPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 68 (354)
.||+|||+|.||++||..+++.|.+|+|+||....++......+......+..+.. .+.+......
T Consensus 13 ~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~ 92 (598)
T PRK09078 13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIEY 92 (598)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHHH
Confidence 68999999999999999999999999999997655544333222111100100100 0011111111
Q ss_pred chhcccccccccc--CCCCCccC---CC---CCCCCC------CC--------CCHHHHHHHHHHHHHHhCCcceEEece
Q 018550 69 LRVNLPRELMGFQ--AYPFVARN---YE---GSVDLR------RY--------PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~---~~---~~~~~~------~~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (354)
+..+.+.....+. +.++.... .. ...... .+ .....+...+.+.+.+.+++ +..++
T Consensus 93 l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~--i~~~~ 170 (598)
T PRK09078 93 MCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAE--FFIEY 170 (598)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCE--EEEeE
Confidence 2222222111111 12221100 00 000000 00 12356777888878777888 99999
Q ss_pred EEEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 127 EVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 127 ~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.++++..++++ ...+...+ .++....+.++.||+|||.+...
T Consensus 171 ~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 171 FALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred EEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 99999875422 23333322 23334688999999999976543
No 204
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.82 E-value=2.6e-09 Score=73.88 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=53.5
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEccC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNG 264 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g 264 (354)
+++|||+|++|+|+|..|++.|++|+++++++. ....+.+++.+ ++++++.++++..++. |+++||
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 589999999999999999999999999999885 12333444555 9999999999986542 667765
No 205
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.82 E-value=3.5e-08 Score=83.07 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=28.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~-~v~lie~~~ 35 (354)
.++|+|||||.+|+.+|..+.+. +- +|.++|..+
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 46899999999999999999764 54 899999764
No 206
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=9.4e-08 Score=89.30 Aligned_cols=103 Identities=26% Similarity=0.341 Sum_probs=77.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~----------------------------------------- 213 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA----------------------------------------- 213 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcC-----------------------------------------
Confidence 689999999999999999999999999999876431000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++.+.+.+.+.+. ++ +.++++|.+++..+ +...+...++.+...++++|.||+|+
T Consensus 214 -----d--------------~~~~~~~~~~l~~~-v~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~i~~D~vi~a~ 270 (471)
T PRK06467 214 -----D--------------KDIVKVFTKRIKKQ-FN--IMLETKVTAVEAKE-DGIYVTMEGKKAPAEPQRYDAVLVAV 270 (471)
T ss_pred -----C--------------HHHHHHHHHHHhhc-eE--EEcCCEEEEEEEcC-CEEEEEEEeCCCcceEEEeCEEEEee
Confidence 0 55666777766665 76 89999999998765 55666655433323579999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|+..
T Consensus 271 G--~~pn~~ 277 (471)
T PRK06467 271 G--RVPNGK 277 (471)
T ss_pred c--ccccCC
Confidence 9 666654
No 207
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.82 E-value=3.3e-08 Score=92.18 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
+...+...+.+.+.+.|++ ++.++.|++++. + +.+.|.+.++ ++.+|.||+|+|.|+...
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~-~-~~~~v~t~~g-----~v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVE--IHENTPMTGLEE-G-QPAVVRTPDG-----QVTADKVVLALNAWMASH 240 (460)
T ss_pred CHHHHHHHHHHHHHHcCCE--EECCCeEEEEee-C-CceEEEeCCc-----EEECCEEEEccccccccc
Confidence 3467778888888888998 999999999975 3 4577777654 689999999999876533
No 208
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=9.1e-08 Score=91.59 Aligned_cols=165 Identities=13% Similarity=0.049 Sum_probs=88.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC----CCCCCC----------cccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG----VDPNRY----------PVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~----~~~~~~----------~~~~~~~~ 67 (354)
..||+|||+|.||++||..+++.|.+|+|+||....++......+......+ ..++.. +.+.....
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~ 91 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIE 91 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHH
Confidence 3689999999999999999999999999999976555443333221111111 111110 00111111
Q ss_pred cchhcccccccccc--CCCCCccC---C---CCCCCCC-----CC--------CCHHHHHHHHHHHHHHhCCcceEEece
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARN---Y---EGSVDLR-----RY--------PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~---~---~~~~~~~-----~~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (354)
.+....+.....+. +.++.... . ....+.. .+ .....+...+.+.+.+.+++ +..++
T Consensus 92 ~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~--i~~~~ 169 (591)
T PRK07057 92 FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQ--FFVEW 169 (591)
T ss_pred HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCE--EEeCc
Confidence 12111111111111 12221100 0 0000000 00 12356777787777778888 89999
Q ss_pred EEEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 127 EVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 127 ~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.++++..++++ ...+...+ .++....+.++.||+|||..+..
T Consensus 170 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 170 MALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred EEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 99998875323 33344322 22334578899999999975543
No 209
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.81 E-value=1e-07 Score=88.50 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=79.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..+++.|.+|+++++.+.+...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------------------- 204 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG----------------------------------------- 204 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-----------------------------------------
Confidence 367999999999999999999999999999986533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.+++ +..++++.++...+ +...+.+.++. ++++|.||+|
T Consensus 205 -~----d--------------~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~viva 258 (446)
T TIGR01424 205 -F----D--------------DDMRALLARNMEGRGIR--IHPQTSLTSITKTD-DGLKVTLSHGE----EIVADVVLFA 258 (446)
T ss_pred -c----C--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeEEEEEcCCc----EeecCEEEEe
Confidence 0 0 56667777778888998 99999999998755 45666665543 7999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 259 ~G--~~pn~~ 266 (446)
T TIGR01424 259 TG--RSPNTK 266 (446)
T ss_pred eC--CCcCCC
Confidence 99 666543
No 210
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.81 E-value=9.5e-08 Score=88.72 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=79.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~---------------------------------------- 205 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSF---------------------------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCccc----------------------------------------
Confidence 3689999999999999999999999999999875431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+++.+++.+++ ++.++.++++..+.++...+...++. ..+.+|.|++|
T Consensus 206 ------d--------------~~~~~~~~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~v~~~~g~---~~i~~D~vi~a 260 (450)
T TIGR01421 206 ------D--------------SMISETITEEYEKEGIN--VHKLSKPVKVEKTVEGKLVIHFEDGK---SIDDVDELIWA 260 (450)
T ss_pred ------C--------------HHHHHHHHHHHHHcCCE--EEcCCEEEEEEEeCCceEEEEECCCc---EEEEcCEEEEe
Confidence 0 56677788888888999 99999999998754233556555442 37899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 261 ~G--~~pn~~ 268 (450)
T TIGR01421 261 IG--RKPNTK 268 (450)
T ss_pred eC--CCcCcc
Confidence 99 666654
No 211
>PRK06370 mercuric reductase; Validated
Probab=98.81 E-value=1.3e-07 Score=88.36 Aligned_cols=104 Identities=26% Similarity=0.318 Sum_probs=79.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~---------------------------------------- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE---------------------------------------- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc----------------------------------------
Confidence 3689999999999999999999999999999875431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+.+++.|++ ++++++|.+++..+ +...+...... ...++.+|.||+|
T Consensus 211 ------~--------------~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~Vi~A 266 (463)
T PRK06370 211 ------D--------------EDVAAAVREILEREGID--VRLNAECIRVERDG-DGIAVGLDCNG-GAPEITGSHILVA 266 (463)
T ss_pred ------C--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEC
Confidence 0 55667777778888998 99999999998765 44555543211 1247999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 267 ~G--~~pn~~ 274 (463)
T PRK06370 267 VG--RVPNTD 274 (463)
T ss_pred cC--CCcCCC
Confidence 99 666654
No 212
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=4.7e-08 Score=94.17 Aligned_cols=165 Identities=21% Similarity=0.188 Sum_probs=85.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc-eeecC-CCCC--CCC--CCCCCCC----------Ccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG-SWIYT-SETE--SDP--LGVDPNR----------YPVHSSL 65 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg-~~~~~-~~~~--~~~--~~~~~~~----------~~~~~~~ 65 (354)
..||+|||+|.||++||..+++.|.+|+|+||...+++ ..... +++. ... ....++. ...+...
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~l 114 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREAN 114 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCHHH
Confidence 36899999999999999999999999999998665542 21111 1110 000 0111110 0111111
Q ss_pred cccchhcccccccccc--CCCCCccCC--------CCCCCCCC-C---CCHHHHH----HHHHHHHHHhCCcceEEeceE
Q 018550 66 YKSLRVNLPRELMGFQ--AYPFVARNY--------EGSVDLRR-Y---PGHEEVL----RYLQNFAREFGVDQVVRLHTE 127 (354)
Q Consensus 66 ~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~-~---~~~~~~~----~~l~~~~~~~~~~~~v~~~~~ 127 (354)
...+..+.+.....+. +.++..... ........ + .+...+. +.+.+.+.+.+++ +.+++.
T Consensus 115 v~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~--i~~~t~ 192 (640)
T PRK07573 115 VYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVK--MYTRTE 192 (640)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCE--EEeceE
Confidence 1122222222111111 222221100 00000000 0 1122333 4455566677888 999999
Q ss_pred EEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCc
Q 018550 128 VLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 128 v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
++++..+++....+...+. ++....+.++.||+|||.++..
T Consensus 193 v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 193 MLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred EEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 9999876522233444332 2334578999999999976543
No 213
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.80 E-value=3.3e-08 Score=91.17 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=81.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC-CCCCCC----------cccccccccch
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG-VDPNRY----------PVHSSLYKSLR 70 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~ 70 (354)
..||+|||+|.||++||..+. .|.+|+|+||.+..++......+....... ..+... ..+..+...+.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~~ 82 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKILA 82 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 379999999999999999985 699999999987766543322111100000 000000 00111111111
Q ss_pred hcccccccccc--CCCCCccC--CC---C--CCCCCC-C---CCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCC
Q 018550 71 VNLPRELMGFQ--AYPFVARN--YE---G--SVDLRR-Y---PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVES 136 (354)
Q Consensus 71 ~~~~~~~~~~~--~~~~~~~~--~~---~--~~~~~~-~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~ 136 (354)
.+.+.....+. +.++.... .. . ...... + .....+.+.+.+.+.+ .+++ +.+++.++++..+++
T Consensus 83 ~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~--i~~~t~v~~Li~~~~ 160 (433)
T PRK06175 83 NESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNIT--IIENCYLVDIIENDN 160 (433)
T ss_pred HHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCE--EEECcEeeeeEecCC
Confidence 11111111111 11111100 00 0 000000 0 1234566667666654 4788 999999999976542
Q ss_pred CcEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 137 NKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 137 ~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
....+...+ .+....+.++.||+|||..+
T Consensus 161 ~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 161 TCIGAICLK-DNKQINIYSKVTILATGGIG 189 (433)
T ss_pred EEEEEEEEE-CCcEEEEEcCeEEEccCccc
Confidence 223333222 12234689999999999643
No 214
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=6.2e-08 Score=92.58 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=88.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC----CCCCCCC----------Cccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP----LGVDPNR----------YPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~----~~~~~~~----------~~~~~~~~~~ 68 (354)
.||+|||+|.||++||..+++.|.+|+|+||....++......+...-. ....++. .+.+......
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~ 87 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEY 87 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 5899999999999999999999999999999865554333221111000 0111110 0111112222
Q ss_pred chhcccccccccc--CCCCCccCC---C---CCCCCCC-----C--------CCHHHHHHHHHHHHHHhCCcceEEeceE
Q 018550 69 LRVNLPRELMGFQ--AYPFVARNY---E---GSVDLRR-----Y--------PGHEEVLRYLQNFAREFGVDQVVRLHTE 127 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~---~---~~~~~~~-----~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 127 (354)
+..+.+.....+. +.++..... . ...+... + .....+...+.+.+.+.+++ +..++.
T Consensus 88 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~--i~~~~~ 165 (588)
T PRK08958 88 MCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT--IFSEWY 165 (588)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCE--EEeCcE
Confidence 2223332222111 223321100 0 0000000 0 12356777777777777887 899999
Q ss_pred EEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 128 VLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 128 v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
++++..++++ ..-+...+ .++....+.++.||+|||..+.
T Consensus 166 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 166 ALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred EEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 9999875323 22333322 2333457889999999997553
No 215
>PLN02507 glutathione reductase
Probab=98.79 E-value=1.4e-07 Score=88.63 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=79.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~---------------------------------------- 242 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGF---------------------------------------- 242 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCccc----------------------------------------
Confidence 3689999999999999999999999999999865321000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+.+++.+++ ++++++|.++...+ +...+...++. ++++|.|++|
T Consensus 243 ------d--------------~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~-~~~~v~~~~g~----~i~~D~vl~a 295 (499)
T PLN02507 243 ------D--------------DEMRAVVARNLEGRGIN--LHPRTNLTQLTKTE-GGIKVITDHGE----EFVADVVLFA 295 (499)
T ss_pred ------C--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CeEEEEECCCc----EEEcCEEEEe
Confidence 0 66777788888888998 99999999998765 55666665543 7999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 296 ~G--~~pn~~ 303 (499)
T PLN02507 296 TG--RAPNTK 303 (499)
T ss_pred ec--CCCCCC
Confidence 99 666654
No 216
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.79 E-value=3.3e-08 Score=91.22 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE-EEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
...+...+.+.+.+.|++ ++.+++|++++.++ +.+ .+.+.++ ++.+|.||+|+|.|+..
T Consensus 200 p~~~~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~~v~t~~~-----~~~a~~VV~a~G~~~~~ 259 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVK--FRFNTPVDGLLVEG-GRITGVQTGGG-----VITADAYVVALGSYSTA 259 (416)
T ss_pred HHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEEeCCc-----EEeCCEEEECCCcchHH
Confidence 357777777788888988 89999999998766 444 3555432 78999999999987643
No 217
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.79 E-value=8.7e-09 Score=68.38 Aligned_cols=37 Identities=38% Similarity=0.625 Sum_probs=34.4
Q ss_pred EEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 7 VIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 7 IIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence 8999999999999999999999999999999988875
No 218
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.78 E-value=1.8e-07 Score=87.26 Aligned_cols=105 Identities=26% Similarity=0.288 Sum_probs=78.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~----------------------------------------- 212 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG----------------------------------------- 212 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-----------------------------------------
Confidence 478999999999999999999999999999986543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIl 160 (354)
+ . .++.+.+++.+++.+++ +++++++.++..++ +...+..... ++...++++|.|++
T Consensus 213 -~----d--------------~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~ 270 (466)
T PRK06115 213 -T----D--------------TETAKTLQKALTKQGMK--FKLGSKVTGATAGA-DGVSLTLEPAAGGAAETLQADYVLV 270 (466)
T ss_pred -C----C--------------HHHHHHHHHHHHhcCCE--EEECcEEEEEEEcC-CeEEEEEEEcCCCceeEEEeCEEEE
Confidence 0 0 45667777788888998 99999999998754 4555554321 12235799999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|+..
T Consensus 271 a~G--~~pn~~ 279 (466)
T PRK06115 271 AIG--RRPYTQ 279 (466)
T ss_pred ccC--Cccccc
Confidence 999 666543
No 219
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.78 E-value=1.4e-07 Score=88.04 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=79.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE----------------------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC-----------------------------------------
Confidence 689999999999999999999999999999865331100
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++.+.+.+.+++.|++ +..++++.+++.++ +.+.+...++. ++++|.|++|+
T Consensus 217 -----d--------------~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~g~----~l~~D~vl~a~ 270 (466)
T PRK07845 217 -----D--------------ADAAEVLEEVFARRGMT--VLKRSRAESVERTG-DGVVVTLTDGR----TVEGSHALMAV 270 (466)
T ss_pred -----C--------------HHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeC-CEEEEEECCCc----EEEecEEEEee
Confidence 0 55667788888888998 99999999998765 55666665553 79999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|+..
T Consensus 271 G--~~pn~~ 277 (466)
T PRK07845 271 G--SVPNTA 277 (466)
T ss_pred c--CCcCCC
Confidence 9 666654
No 220
>PRK07846 mycothione reductase; Reviewed
Probab=98.78 E-value=1.3e-07 Score=87.89 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=75.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~----------------------------------------- 204 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH----------------------------------------- 204 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----------------------------------------
Confidence 368999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.. +.+++ +++++++++++.++ +...+.+.++. ++++|.|++|
T Consensus 205 -~---d---------------~~~~~~l~~l~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~i~~D~vl~a 257 (451)
T PRK07846 205 -L---D---------------DDISERFTELA-SKRWD--VRLGRNVVGVSQDG-SGVTLRLDDGS----TVEADVLLVA 257 (451)
T ss_pred -c---C---------------HHHHHHHHHHH-hcCeE--EEeCCEEEEEEEcC-CEEEEEECCCc----EeecCEEEEE
Confidence 0 0 44555555443 34676 88999999998755 55666665543 7999999999
Q ss_pred eCCCCCcccCC
Q 018550 162 NGHFSVPRLAQ 172 (354)
Q Consensus 162 tG~~s~~~~p~ 172 (354)
+| ..|+...
T Consensus 258 ~G--~~pn~~~ 266 (451)
T PRK07846 258 TG--RVPNGDL 266 (451)
T ss_pred EC--CccCccc
Confidence 99 6666544
No 221
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.77 E-value=1.4e-07 Score=90.52 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=83.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCC--CCCCCCC--CCCCCC----------ccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSE--TESDPLG--VDPNRY----------PVHSSLY 66 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~--~~~~~~~--~~~~~~----------~~~~~~~ 66 (354)
.||+|||+|.||++||..+++. |.+|+|+||....++.. ...+ ..+...+ ..++.. ..+....
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 6899999999999999999998 99999999976433222 1111 1111111 011100 0000011
Q ss_pred ccchhcccccccccc--CCCCCccC---CCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEE
Q 018550 67 KSLRVNLPRELMGFQ--AYPFVARN---YEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWK 140 (354)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~ 140 (354)
..+....+.....+. +.++.... ...............+...+.+.+.+.+ ++ +..++.++++..+++....
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~--i~~~~~v~~Li~~~g~v~G 168 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDN--VLNRVFITDLLVDDNRIAG 168 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCE--EEeCCEEEEEEEeCCEEEE
Confidence 111111111111111 12221100 0000000011234567777777776654 88 9999999999865522222
Q ss_pred EEE-eecCCceEEEEeCEEEEeeCCCCC
Q 018550 141 VKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 141 v~~-~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+.. ....+....+.++.||+|||.++.
T Consensus 169 v~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 169 AVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEccCCcEEEEECCEEEECCCchhh
Confidence 322 111222357899999999997654
No 222
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=1.3e-07 Score=90.58 Aligned_cols=162 Identities=18% Similarity=0.104 Sum_probs=84.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--------------Ccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--------------YPVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 67 (354)
..||+|||+|.||++||..+++. .+|+|+||....++......+...-..+..+.. .+.+.....
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v~ 83 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAE 83 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHH
Confidence 36899999999999999999987 999999997654443222211110000000110 000111111
Q ss_pred cchhcccccccccc--CCCCCccCCC------CCCC---------CC-CC---CCHHHHHHHHHHHHHHhCCcceEEece
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARNYE------GSVD---------LR-RY---PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~---------~~-~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (354)
.+..+.+.....+. +.++...... .... .. .+ .+...+...+.+.+.+.+++ +..++
T Consensus 84 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~--i~~~~ 161 (583)
T PRK08205 84 IMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVE--FFNEF 161 (583)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCE--EEeCC
Confidence 11111221111111 2222111000 0000 00 01 12356778888888888888 99999
Q ss_pred EEEEEEEeC----CCcEEEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 127 EVLNARLVE----SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 127 ~v~~i~~~~----~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
.++++..++ +....+...+ .++....+.++.||+|||.++
T Consensus 162 ~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 162 YVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred EEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 999998654 1222233221 223335789999999999755
No 223
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.76 E-value=9.6e-08 Score=82.47 Aligned_cols=106 Identities=26% Similarity=0.328 Sum_probs=88.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||+|..|+..+.--.+.|-+|+++|-.+++|+.+.
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD--------------------------------------- 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD--------------------------------------- 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------------
Confidence 47899999999999999999999999999999887765532
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIl 160 (354)
.++...++..+.+.++. +.++++|+.++.+.++...+.+.+.. ++.+++++|.+++
T Consensus 252 ---------------------~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLV 308 (506)
T KOG1335|consen 252 ---------------------GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLV 308 (506)
T ss_pred ---------------------HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEE
Confidence 67778888888888999 99999999999987567777776643 3458999999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| .+|..-
T Consensus 309 siG--RrP~t~ 317 (506)
T KOG1335|consen 309 SIG--RRPFTE 317 (506)
T ss_pred Ecc--Cccccc
Confidence 999 555543
No 224
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.76 E-value=1.8e-07 Score=86.76 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 102 HEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 102 ~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
...+.+.+.+.+.+ .+++ ++++++|+++.+.+++.|++...+ ..+...++.+|+||+|.|.|+..
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~--i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQ--VKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred HHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence 34566666666544 3777 899999999988733789887532 11111368999999999987743
No 225
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.76 E-value=1.8e-07 Score=87.00 Aligned_cols=99 Identities=23% Similarity=0.297 Sum_probs=75.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---~--------------------------------------- 187 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP---D--------------------------------------- 187 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc---h---------------------------------------
Confidence 6899999999999999999999999999998653210 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
.+ ..++.+++.+.+++.+++ +++++++.++..++ +...+...+ . ++.+|.+|+|+
T Consensus 188 ---------------~~--~~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~-~----~i~~d~vi~a~ 242 (444)
T PRK09564 188 ---------------SF--DKEITDVMEEELRENGVE--LHLNEFVKSLIGED-KVEGVVTDK-G----EYEADVVIVAT 242 (444)
T ss_pred ---------------hc--CHHHHHHHHHHHHHCCCE--EEcCCEEEEEecCC-cEEEEEeCC-C----EEEcCEEEECc
Confidence 00 066778888888888998 99999999996533 333444433 2 68999999999
Q ss_pred CCCCCccc
Q 018550 163 GHFSVPRL 170 (354)
Q Consensus 163 G~~s~~~~ 170 (354)
| ..|+.
T Consensus 243 G--~~p~~ 248 (444)
T PRK09564 243 G--VKPNT 248 (444)
T ss_pred C--CCcCH
Confidence 9 55543
No 226
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.75 E-value=1.1e-07 Score=91.42 Aligned_cols=66 Identities=18% Similarity=0.042 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC-CC-cEEEEEeec-CCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SN-KWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~-~~-~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
+...+...+...+.+.|.+ +..+++|+++..++ ++ .+.+...+. ++...++.+|.||+|+|.|+..
T Consensus 230 dp~rl~~al~~~A~~~Ga~--i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~ 298 (627)
T PLN02464 230 NDSRLNVALACTAALAGAA--VLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDE 298 (627)
T ss_pred cHHHHHHHHHHHHHhCCcE--EEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHH
Confidence 4467777888888888988 88999999998763 13 344555432 2223478999999999987643
No 227
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.75 E-value=1.2e-07 Score=88.30 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
+...+...+.+.+.+.|++ ++++++|+++..++++.|.+++.+. .+...++.+|+||+|+|.|+..
T Consensus 176 dp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence 3467788888888888988 9999999999886535688765431 1212368999999999987643
No 228
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=1.2e-07 Score=90.79 Aligned_cols=163 Identities=19% Similarity=0.195 Sum_probs=86.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCC-CCC--CCCCC--CCCCC----------Cccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTS-ETE--SDPLG--VDPNR----------YPVHSS 64 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~-~~~--~~~~~--~~~~~----------~~~~~~ 64 (354)
..||+|||+|.||++||..+++.| .+|+|+||....++...... ++. ..+.. ..++. .+.+..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 469999999999999999999874 89999999765554333221 111 00000 00100 001111
Q ss_pred ccccchhcccccccccc--CCCCCccCCC--------CC-CCCCCC---CCHHHHHHHHHHHHHHhCCcceEEeceEEEE
Q 018550 65 LYKSLRVNLPRELMGFQ--AYPFVARNYE--------GS-VDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLN 130 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~-~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~ 130 (354)
....+..+.+.....+. +.++...... .. .....+ .....+...+.+.+.+.+++ +..++.+++
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~--i~~~t~v~~ 160 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVT--IYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCE--EEeCcEEEE
Confidence 12222222222211111 1222110000 00 000001 13356778888877777888 899999999
Q ss_pred EEEeCCCc-EEEEE-eecCCceEEEEeCEEEEeeCCCCC
Q 018550 131 ARLVESNK-WKVKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 131 i~~~~~~~-~~v~~-~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+..++ +. ..+.. ...++....+.++.||+|||.++.
T Consensus 161 L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 161 LILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 98754 32 22221 111222346899999999997654
No 229
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.75 E-value=7.5e-08 Score=89.58 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHH----hCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 101 GHEEVLRYLQNFARE----FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~----~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+...+...+.+.+.+ .|....+.++++|++|...+++.|.|.+.++ ++.+|.||+|+|.|+.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-----~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-----EIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-----EEEeCEEEECcChhHH
Confidence 345677777777777 6733238899999999987436788887765 7999999999998764
No 230
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.74 E-value=2.1e-07 Score=86.39 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=77.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE----------------------------------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCc-----------------------------------------
Confidence 689999999999999999999999999999865331000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++.+.+.+.+++.|++ +++++++.+++.++ +.+.+...++ ++.+|.|++|+
T Consensus 198 -----~--------------~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~v~v~~~~g-----~i~~D~vl~a~ 250 (441)
T PRK08010 198 -----D--------------RDIADNIATILRDQGVD--IILNAHVERISHHE-NQVQVHSEHA-----QLAVDALLIAS 250 (441)
T ss_pred -----C--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEcCC-----eEEeCEEEEee
Confidence 0 55667788888888999 99999999998765 5555554332 58899999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| .+|+..
T Consensus 251 G--~~pn~~ 257 (441)
T PRK08010 251 G--RQPATA 257 (441)
T ss_pred c--CCcCCC
Confidence 9 566543
No 231
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.74 E-value=1.2e-07 Score=84.76 Aligned_cols=130 Identities=22% Similarity=0.407 Sum_probs=89.9
Q ss_pred eEEEEcCChHHHHHHHHHHHc-------------CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccch
Q 018550 4 HVAVIGAGAAGLVVGHELLRE-------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR 70 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~-------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (354)
+|+|+|||+.|+.+|.+|++. .++|+|+|+.+.+ ..
T Consensus 157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I----Lp--------------------------- 205 (405)
T COG1252 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI----LP--------------------------- 205 (405)
T ss_pred EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh----cc---------------------------
Confidence 699999999999999999764 1389999987643 00
Q ss_pred hccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.|+ .++.++.++..++.|++ +++++.|++++.+. +++++++
T Consensus 206 ---------------------------~~~--~~l~~~a~~~L~~~GV~--v~l~~~Vt~v~~~~-----v~~~~g~--- 246 (405)
T COG1252 206 ---------------------------MFP--PKLSKYAERALEKLGVE--VLLGTPVTEVTPDG-----VTLKDGE--- 246 (405)
T ss_pred ---------------------------CCC--HHHHHHHHHHHHHCCCE--EEcCCceEEECCCc-----EEEccCC---
Confidence 011 78889999999999999 99999999997654 6776664
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCC-CcceeecccCCCCCCCCCCeEEEEccC
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSW-PGKQMHSHNYRIPNPFQDQVVILIGHY 206 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~-~~~~~~~~~~~~~~~~~~~~v~ViG~G 206 (354)
.+++++.+|-|+|....+..-.+.+.+.- .++.......... .-..|-++|-.
T Consensus 247 ~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~---~~~~IFa~GD~ 300 (405)
T COG1252 247 EEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVP---GHPDIFAAGDC 300 (405)
T ss_pred eeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccC---CCCCeEEEecc
Confidence 15999999999997555544443233322 2344432222111 22457777743
No 232
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.74 E-value=9.3e-08 Score=86.61 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=31.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
+||+|||||++|+++|+.|+++|.+|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999753
No 233
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.73 E-value=2.6e-07 Score=86.32 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=77.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
.++++|||||+.|+.+|..+... |.+|+|+++.+.+...+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~------------------------------------- 229 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGF------------------------------------- 229 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccccc-------------------------------------
Confidence 36899999999999999876654 89999999876431000
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
. .++.+.+.+.+++.+++ +++++.+.++..++++...+.+.++. ++++|.|
T Consensus 230 ---------d--------------~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~i~~D~v 280 (486)
T TIGR01423 230 ---------D--------------STLRKELTKQLRANGIN--IMTNENPAKVTLNADGSKHVTFESGK----TLDVDVV 280 (486)
T ss_pred ---------C--------------HHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCceEEEEEcCCC----EEEcCEE
Confidence 0 66778888888888998 99999999998754243556655543 7999999
Q ss_pred EEeeCCCCCcccC
Q 018550 159 VVCNGHFSVPRLA 171 (354)
Q Consensus 159 IlAtG~~s~~~~p 171 (354)
++|+| ..|+..
T Consensus 281 l~a~G--~~Pn~~ 291 (486)
T TIGR01423 281 MMAIG--RVPRTQ 291 (486)
T ss_pred EEeeC--CCcCcc
Confidence 99999 666654
No 234
>PRK08275 putative oxidoreductase; Provisional
Probab=98.73 E-value=1.6e-07 Score=89.41 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=84.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCcc-ceeecCCCCCCC---CCCCCCCCC----------cccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVG-GSWIYTSETESD---PLGVDPNRY----------PVHSSL 65 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~g-g~~~~~~~~~~~---~~~~~~~~~----------~~~~~~ 65 (354)
.+||+|||+|.||++||..+++. |.+|+|+||.+..+ +.+....+..+. +-...|+.. ..+...
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence 36899999999999999999987 68999999976532 221111000000 000111100 011111
Q ss_pred cccchhcccccccccc--CCCCCccCCCC----C-CC--CCCC--CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 66 YKSLRVNLPRELMGFQ--AYPFVARNYEG----S-VD--LRRY--PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 66 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~-~~--~~~~--~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
...+..+.+.....+. +.++....... . .. ...+ +....+.+.+.+.+.+.+++ +..++.++++..+
T Consensus 89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~ 166 (554)
T PRK08275 89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVL--ITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCE--EEcceEEEEEEEc
Confidence 1111111111111111 11111100000 0 00 0011 23457888888888888888 9999999999876
Q ss_pred CCCc-EEEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 135 ESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 135 ~~~~-~~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
+++. ..+...+ ..+....+.++.||+|||..+
T Consensus 167 ~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 167 ADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred CCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3232 2233222 222335689999999999654
No 235
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=1.5e-07 Score=90.15 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=85.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC---CcEEEEeeCCCccceeecCCCCCCCCC----CCCCCCC----------ccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPL----GVDPNRY----------PVHSS 64 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g---~~v~lie~~~~~gg~~~~~~~~~~~~~----~~~~~~~----------~~~~~ 64 (354)
..||+|||+|.||++||..+++.| .+|+|+||....++......+...... +..++.. +.+..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~~ 84 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQD 84 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCHH
Confidence 468999999999999999999998 899999998766654443322111100 1111110 01111
Q ss_pred ccccchhcccccccccc--CCCCCccCCC----CCCCCCCCC--------CHHHHHHHHHHHHHH-hCCcceEEeceEEE
Q 018550 65 LYKSLRVNLPRELMGFQ--AYPFVARNYE----GSVDLRRYP--------GHEEVLRYLQNFARE-FGVDQVVRLHTEVL 129 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~ 129 (354)
....+..+.+.....+. +.++...... .......++ +...+...+.+.+.+ .+++ +..++.++
T Consensus 85 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~--i~~~~~v~ 162 (577)
T PRK06069 85 AVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIH--FYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCE--EEECCEEE
Confidence 11222222222211111 2222110000 000000111 224566666666655 5777 88999999
Q ss_pred EEEEeCCCcE-EEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 130 NARLVESNKW-KVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 130 ~i~~~~~~~~-~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
++..++ +.. .+...+ .++....+.++.||+|||..+
T Consensus 163 ~Li~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 163 SLIVEN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred EEEEEC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 998655 432 222212 122235789999999999654
No 236
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.72 E-value=1.4e-07 Score=88.85 Aligned_cols=161 Identities=18% Similarity=0.165 Sum_probs=85.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC--CCCCCC----------Ccccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~ 69 (354)
..||+|||+|.||++||..+++ |.+|+|+||.+..++......+...... ...++. ...+......+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 4699999999999999999976 8999999998766655443322111000 011110 01111111122
Q ss_pred hhcccccccccc--CCCCCccC--------CCCCCCCC-CC----CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 70 RVNLPRELMGFQ--AYPFVARN--------YEGSVDLR-RY----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
..+.+.....+. +.++.... ........ .+ .....+.+.+.+.+. .+++ +..++.++++..+
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~--i~~~~~v~~Li~~ 158 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVT--VVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCE--EEECeEhhheeec
Confidence 222221111111 22222100 00000000 00 122456666666554 4777 8899999999765
Q ss_pred CCCc-EEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 135 ESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 135 ~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+ +. ..+...+.++....+.++.||+|||.++.
T Consensus 159 ~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 159 N-GRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred C-CEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 5 43 33444443334457899999999996543
No 237
>PLN02815 L-aspartate oxidase
Probab=98.72 E-value=1.7e-07 Score=89.42 Aligned_cols=162 Identities=16% Similarity=0.131 Sum_probs=86.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC--CCCCCC----------Ccccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~ 69 (354)
..||+|||+|.||++||..+++.| +|+|+||.+..++......+..+-.. ...++. ...+......+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~ 107 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVV 107 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHHH
Confidence 368999999999999999999999 99999998776654443322111000 001110 01111112222
Q ss_pred hhcccccccccc--CCCCCccC--------CCCCCCCCC-C---CCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEe
Q 018550 70 RVNLPRELMGFQ--AYPFVARN--------YEGSVDLRR-Y---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~-~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~ 134 (354)
..+.+.....+. +.++.... ......... + .....+...+.+.+.+. +++ +..++.++++..+
T Consensus 108 ~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~--i~~~~~~~~Li~~ 185 (594)
T PLN02815 108 CTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNIT--FFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCE--EEeceEhheeeee
Confidence 222222111111 12221100 000000000 0 12356777777766554 777 8899999998875
Q ss_pred CCC----cEEEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 135 ESN----KWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 135 ~~~----~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
+++ ..-+...+ .++....+.++.||||||.+.
T Consensus 186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 423 23343322 233346789999999999654
No 238
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.72 E-value=1.9e-07 Score=86.44 Aligned_cols=99 Identities=20% Similarity=0.309 Sum_probs=75.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|++|+.+|..|++.|.+|+++++.+.+.. . .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~---~--------------------------------------~ 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN---K--------------------------------------L 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc---c--------------------------------------c
Confidence 6899999999999999999999999999998653310 0 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+. .++.+.+.+.+++.|++ +.+++++.++..++ .. +...++. ++.+|.||+|+
T Consensus 177 ----------------~~--~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~--~~-v~~~~g~----~i~~D~vi~a~ 229 (427)
T TIGR03385 177 ----------------FD--EEMNQIVEEELKKHEIN--LRLNEEVDSIEGEE--RV-KVFTSGG----VYQADMVILAT 229 (427)
T ss_pred ----------------cC--HHHHHHHHHHHHHcCCE--EEeCCEEEEEecCC--CE-EEEcCCC----EEEeCEEEECC
Confidence 00 55667778888888998 89999999997643 23 3444543 79999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|...
T Consensus 230 G--~~p~~~ 236 (427)
T TIGR03385 230 G--IKPNSE 236 (427)
T ss_pred C--ccCCHH
Confidence 9 565543
No 239
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.72 E-value=1.5e-07 Score=85.02 Aligned_cols=129 Identities=16% Similarity=0.265 Sum_probs=73.4
Q ss_pred eEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccc--eeecCCCCCCCCCCCCCCC--Cc--ccccccccchhcccc
Q 018550 4 HVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGG--SWIYTSETESDPLGVDPNR--YP--VHSSLYKSLRVNLPR 75 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg--~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~ 75 (354)
||+|||||+||+++|..|++. |++|.++|+.+..++ +|..+.. ...+.. .+ .-...|.......+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~------~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDS------DLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceeccc------ccchhhhhhhhhhheEeCCCCEEECcc
Confidence 699999999999999999987 999999999876654 3332210 000000 00 001122221111110
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
....+ ........+.++.+++.+.+ +.. +.++++|.+++ . +.+++ .+|. ++.+
T Consensus 75 ~~~~l-------------~~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~--~-~~v~l--~dg~----~~~A 127 (370)
T TIGR01789 75 YRRKL-------------KTAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLD--A-DGVDL--APGT----RINA 127 (370)
T ss_pred hhhhc-------------CCCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEe--C-CEEEE--CCCC----EEEe
Confidence 00000 01112234466766665433 333 66688999883 2 44444 5554 8999
Q ss_pred CEEEEeeCCC
Q 018550 156 DAVVVCNGHF 165 (354)
Q Consensus 156 d~vIlAtG~~ 165 (354)
+.||.|+|..
T Consensus 128 ~~VI~A~G~~ 137 (370)
T TIGR01789 128 RSVIDCRGFK 137 (370)
T ss_pred eEEEECCCCC
Confidence 9999999954
No 240
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.71 E-value=2.9e-07 Score=85.56 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=74.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~---------------------------------------- 208 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHL---------------------------------------- 208 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccccc----------------------------------------
Confidence 3689999999999999999999999999999865431000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+... .+++ ++++++|.+++.++ +...++..++. ++++|.|++|
T Consensus 209 -----d---------------~~~~~~l~~~~~-~gI~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~~D~vl~a 260 (452)
T TIGR03452 209 -----D---------------EDISDRFTEIAK-KKWD--IRLGRNVTAVEQDG-DGVTLTLDDGS----TVTADVLLVA 260 (452)
T ss_pred -----C---------------HHHHHHHHHHHh-cCCE--EEeCCEEEEEEEcC-CeEEEEEcCCC----EEEcCEEEEe
Confidence 0 444455554433 4677 89999999998765 55666665543 7999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 261 ~G--~~pn~~ 268 (452)
T TIGR03452 261 TG--RVPNGD 268 (452)
T ss_pred ec--cCcCCC
Confidence 99 666654
No 241
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.71 E-value=2.7e-07 Score=88.10 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=87.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCC--CCCC----------CCcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLG--VDPN----------RYPVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~--~~~~----------~~~~~~~~~~ 67 (354)
..||+|||+|.||++||..+++. |.+|+|+||....++......+......+ ..++ ..+.+.....
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 46899999999999999999987 57999999987666554443221110000 0111 0011111222
Q ss_pred cchhcccccccccc--CCCCCccC---C-----CCCCCCCC-C---CCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEE
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARN---Y-----EGSVDLRR-Y---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR 132 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~---~-----~~~~~~~~-~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~ 132 (354)
.+..+.+..+..+. +.++.... . ........ + .....+...+.+.+.+. ++. +..++.++++.
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li 160 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIM--RYDEWFVTDLL 160 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCE--EEeCeEEEEEE
Confidence 22233332222221 22222110 0 00000000 0 13456777777766553 676 88899999998
Q ss_pred EeCCCcEEEEE-eecCCceEEEEeCEEEEeeCCCCC
Q 018550 133 LVESNKWKVKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 133 ~~~~~~~~v~~-~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
.+++...-+.. ...++....+.++.||+|||..+.
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 76522222222 212233467899999999997554
No 242
>PTZ00058 glutathione reductase; Provisional
Probab=98.71 E-value=3.2e-07 Score=86.80 Aligned_cols=103 Identities=17% Similarity=0.344 Sum_probs=77.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~----------------------------------------- 275 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK----------------------------------------- 275 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-----------------------------------------
Confidence 368999999999999999999999999999987533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.|++ +.++..+.+++..+++...+...++. .++++|.|++|
T Consensus 276 -~----d--------------~~i~~~l~~~L~~~GV~--i~~~~~V~~I~~~~~~~v~v~~~~~~---~~i~aD~VlvA 331 (561)
T PTZ00058 276 -F----D--------------ETIINELENDMKKNNIN--IITHANVEEIEKVKEKNLTIYLSDGR---KYEHFDYVIYC 331 (561)
T ss_pred -C----C--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCCcEEEEECCCC---EEEECCEEEEC
Confidence 0 0 56677778888888998 99999999998654234444443322 47999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|...
T Consensus 332 ~G--r~Pn~~ 339 (561)
T PTZ00058 332 VG--RSPNTE 339 (561)
T ss_pred cC--CCCCcc
Confidence 99 566544
No 243
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.70 E-value=2.6e-07 Score=91.34 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=78.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||||+.|+.+|..|++.|.+|+++++.+.+- .. .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll---~~--------------------------------------~ 179 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM---AK--------------------------------------Q 179 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh---hh--------------------------------------h
Confidence 689999999999999999999999999999865320 00 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+ . ......+.+.+++.|++ +++++.++++..++ ....+.+.+|. ++++|.||+|+
T Consensus 180 l----d--------------~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~-~~~~v~~~dG~----~i~~D~Vi~a~ 234 (785)
T TIGR02374 180 L----D--------------QTAGRLLQRELEQKGLT--FLLEKDTVEIVGAT-KADRIRFKDGS----SLEADLIVMAA 234 (785)
T ss_pred c----C--------------HHHHHHHHHHHHHcCCE--EEeCCceEEEEcCC-ceEEEEECCCC----EEEcCEEEECC
Confidence 0 0 55667778888888999 99999999987543 44556676664 89999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| .+|+..
T Consensus 235 G--~~Pn~~ 241 (785)
T TIGR02374 235 G--IRPNDE 241 (785)
T ss_pred C--CCcCcH
Confidence 9 666553
No 244
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.69 E-value=9e-07 Score=82.74 Aligned_cols=104 Identities=26% Similarity=0.341 Sum_probs=77.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 208 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLE---------------------------------------- 208 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcch----------------------------------------
Confidence 3689999999999999999999999999999875431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
..++.+.+.+.+++. ++ +++++++.+++.+++...+++..+++ ..++.+|.|++|
T Consensus 209 --------------------d~~~~~~~~~~l~~~-I~--i~~~~~v~~i~~~~~~~v~~~~~~~~--~~~i~~D~vi~a 263 (460)
T PRK06292 209 --------------------DPEVSKQAQKILSKE-FK--IKLGAKVTSVEKSGDEKVEELEKGGK--TETIEADYVLVA 263 (460)
T ss_pred --------------------hHHHHHHHHHHHhhc-cE--EEcCCEEEEEEEcCCceEEEEEcCCc--eEEEEeCEEEEc
Confidence 056667777777776 87 89999999998654213444332332 347999999999
Q ss_pred eCCCCCcccCC
Q 018550 162 NGHFSVPRLAQ 172 (354)
Q Consensus 162 tG~~s~~~~p~ 172 (354)
+| ..|+...
T Consensus 264 ~G--~~p~~~~ 272 (460)
T PRK06292 264 TG--RRPNTDG 272 (460)
T ss_pred cC--CccCCCC
Confidence 99 6777653
No 245
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.69 E-value=2.5e-07 Score=88.49 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=86.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCC--CCCCCC----------Ccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~ 67 (354)
..||+|||+|.||++||..+++.| .+|+|+||....++......+...... ...++. .+.+.....
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 83 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE 83 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 468999999999999999999874 799999998766655444322111000 011110 011111222
Q ss_pred cchhcccccccccc--CCCCCccCC--------CCCCCCCCC----CCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEE
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARNY--------EGSVDLRRY----PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR 132 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~~----~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~ 132 (354)
.+..+.+.....+. +.++..... ........+ .....+...+.+.+.+. +++ +..++.++++.
T Consensus 84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li 161 (582)
T PRK09231 84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQ--RFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcE--EEeCeEEEEEE
Confidence 22222222211111 222221100 000000000 12345666666655553 666 88899999998
Q ss_pred EeCCCcEE-EEE-eecCCceEEEEeCEEEEeeCCCCC
Q 018550 133 LVESNKWK-VKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 133 ~~~~~~~~-v~~-~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
.++ +... +.. ...++....+.++.||+|||.++.
T Consensus 162 ~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 162 VDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred EeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 765 4332 222 112223467899999999997554
No 246
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.69 E-value=1.5e-08 Score=99.85 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=77.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCc---cceeecCCCCCCCCCCCCCCCCcccccccccchhcc-ccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQV---GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL-PRE 76 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 76 (354)
++|+||||||+|+++|..|++. |++|+|+|+.+.. |..+...+.... .+.. ........+.... ...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~-~L~~------~~~~~~~~~~~~~~~~~ 73 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLG-NLRA------ADPVSAAAIGDAFNHWD 73 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHH-HHHh------cCHHHHHHHHHhcccCC
Confidence 4899999999999999999998 8999999997653 333322211000 0000 0000000000000 000
Q ss_pred cccccCCCCCccCCCCCCCCCC--CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 77 LMGFQAYPFVARNYEGSVDLRR--YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
...+. ...... ...... -..+.++.+.|.+.+.+.+++ ++++++++++.. ....
T Consensus 74 ~~~~~-~~g~~~----~~~g~~~~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i~~-----------------~~~~ 129 (765)
T PRK08255 74 DIDVH-FKGRRI----RSGGHGFAGIGRKRLLNILQARCEELGVK--LVFETEVPDDQA-----------------LAAD 129 (765)
T ss_pred ceEEE-ECCEEE----EECCeeEecCCHHHHHHHHHHHHHHcCCE--EEeCCccCchhh-----------------hhcC
Confidence 00000 000000 000111 145789999999999999988 899888876531 1347
Q ss_pred eCEEEEeeCCCCCcc
Q 018550 155 FDAVVVCNGHFSVPR 169 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~ 169 (354)
+|.||.|+|.+|..+
T Consensus 130 ~D~VVgADG~~S~vR 144 (765)
T PRK08255 130 ADLVIASDGLNSRIR 144 (765)
T ss_pred CCEEEEcCCCCHHHH
Confidence 899999999877554
No 247
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.69 E-value=5.9e-08 Score=83.82 Aligned_cols=162 Identities=20% Similarity=0.223 Sum_probs=84.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC----ccceeecCCCCC-CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ----VGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~----~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
..||+|||||.+|.++|..|++.|.+|.+|||+-. +-|-+.+.++.. ...+|+.-.-..++.........+....
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk 124 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGK 124 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCc
Confidence 36899999999999999999999999999999522 111111111110 0111111000000000000000000000
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
-.+.+++............|.+ -.+.+.+++.+... +++ ..+..|.++-.+++--..++.++..+++.+..+
T Consensus 125 ---~v~~pyP~~~f~~d~~GrsFhn-GRFvq~lR~ka~slpNV~---~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~A 197 (509)
T KOG1298|consen 125 ---EVDLPYPLKNFPSDPSGRSFHN-GRFVQRLRKKAASLPNVR---LEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFA 197 (509)
T ss_pred ---eeeccCCCcCCCCCcccceeec-cHHHHHHHHHHhcCCCeE---EeeeeHHHHHhccCeEEeEEEecCCCceEEEec
Confidence 0022332221111112233333 45666777666543 554 345677777666533344666666666678899
Q ss_pred CEEEEeeCCCCCccc
Q 018550 156 DAVVVCNGHFSVPRL 170 (354)
Q Consensus 156 d~vIlAtG~~s~~~~ 170 (354)
..-|+|+|.+|+-|.
T Consensus 198 pLTvVCDGcfSnlRr 212 (509)
T KOG1298|consen 198 PLTVVCDGCFSNLRR 212 (509)
T ss_pred ceEEEecchhHHHHH
Confidence 999999999876554
No 248
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.67 E-value=4.7e-07 Score=83.88 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=75.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~----------------------------------------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLM----------------------------------------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhc-----------------------------------------
Confidence 689999999999999999999999999999865431100
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++.+.+.+.+++.|++ ++++++|.+++. . .+++.++. ++.+|.|++|+
T Consensus 188 -----d--------------~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~---~--~v~~~~g~----~~~~D~vl~a~ 237 (438)
T PRK13512 188 -----D--------------ADMNQPILDELDKREIP--YRLNEEIDAING---N--EVTFKSGK----VEHYDMIIEGV 237 (438)
T ss_pred -----C--------------HHHHHHHHHHHHhcCCE--EEECCeEEEEeC---C--EEEECCCC----EEEeCEEEECc
Confidence 0 56677778888888998 999999999863 2 35555543 78999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| .+|+..
T Consensus 238 G--~~pn~~ 244 (438)
T PRK13512 238 G--THPNSK 244 (438)
T ss_pred C--CCcChH
Confidence 9 666543
No 249
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.67 E-value=7.7e-08 Score=84.29 Aligned_cols=37 Identities=35% Similarity=0.491 Sum_probs=33.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~ 37 (354)
++.+|+|||||.+|++.|..|.+.|++|+|+|+...+
T Consensus 1 ~~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4678999999999999999999999999999997654
No 250
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.67 E-value=3.2e-07 Score=87.87 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=85.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC-----CCCCCCCC----------ccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-----LGVDPNRY----------PVHSSLY 66 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~-----~~~~~~~~----------~~~~~~~ 66 (354)
+.||+|||+|.||++||.++++.|.+|+|+||....++......+..+-. ....|+.. +.+....
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 46999999999999999999999999999999866554433322211100 01111110 1111112
Q ss_pred ccchhcccccccccc--CCCCCccC--------CCCCCCCC-CC---CCHHHHHHHHHHHHHHhC----CcceEEeceEE
Q 018550 67 KSLRVNLPRELMGFQ--AYPFVARN--------YEGSVDLR-RY---PGHEEVLRYLQNFAREFG----VDQVVRLHTEV 128 (354)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~----~~~~v~~~~~v 128 (354)
..+..+.+.....+. +.++.... ........ .+ .....+...+.+.+.+.+ ++ +..++.+
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~--i~~~~~~ 160 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVT--KYEGWEF 160 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcE--EEeeEEE
Confidence 222222222111111 22221100 00000000 01 134567777777766543 44 7778888
Q ss_pred EEEEEeCCC-cEEEEEeec-CCceEEEEeCEEEEeeCCCCC
Q 018550 129 LNARLVESN-KWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 129 ~~i~~~~~~-~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+++..++++ ..-+...+. ++....+.++.||+|||.++.
T Consensus 161 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 161 LGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred EEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 888865323 233443332 223357889999999997554
No 251
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.67 E-value=2.7e-07 Score=88.32 Aligned_cols=44 Identities=36% Similarity=0.475 Sum_probs=39.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~ 45 (354)
.+||+|||+|.+|+++|..+++.|.+|+||||.+.+||.+....
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~ 55 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSG 55 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccC
Confidence 47999999999999999999999999999999887887766543
No 252
>PRK14727 putative mercuric reductase; Provisional
Probab=98.67 E-value=4.6e-07 Score=84.93 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=76.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.. + +..
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~---l~~-------------------------------------- 225 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-L---LFR-------------------------------------- 225 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-C---CCc--------------------------------------
Confidence 3689999999999999999999999999998742 1 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. ..++.+.+.+.+++.|++ +++++++.++..++ +.+.+...++ ++.+|.||+|
T Consensus 226 -----~--------------d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~i~aD~VlvA 278 (479)
T PRK14727 226 -----E--------------DPLLGETLTACFEKEGIE--VLNNTQASLVEHDD-NGFVLTTGHG-----ELRAEKLLIS 278 (479)
T ss_pred -----c--------------hHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeC-CEEEEEEcCC-----eEEeCEEEEc
Confidence 0 056677888888888998 99999999998765 5566655433 6899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 279 ~G--~~pn~~ 286 (479)
T PRK14727 279 TG--RHANTH 286 (479)
T ss_pred cC--CCCCcc
Confidence 99 566554
No 253
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.67 E-value=2.7e-07 Score=84.28 Aligned_cols=59 Identities=22% Similarity=0.141 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+..-+...+.+.|... +..++.+..+.... ..+.+.+.++ ++.+|.||+|+|.|+..
T Consensus 156 ~~~~~~l~~~~~~~G~~~-~~~~~~~~~~~~~~-~~~~v~t~~g-----~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 156 RLLTRALAAAAEELGVVI-IEGGTPVTSLERDG-RVVGVETDGG-----TIEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHHHHHhcCCeE-EEccceEEEEEecC-cEEEEEeCCc-----cEEeCEEEEcCchHHHH
Confidence 566677777777777441 55688888888753 4677888776 59999999999986554
No 254
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.66 E-value=2.7e-07 Score=88.19 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=37.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
..||||||+|.+|+++|..++++|.+|+|+||.+..||....
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~ 52 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTAL 52 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHH
Confidence 468999999999999999999999999999998877765443
No 255
>PRK14694 putative mercuric reductase; Provisional
Probab=98.66 E-value=5.1e-07 Score=84.45 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=76.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++...+ ..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l----~~-------------------------------------- 215 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL----SQ-------------------------------------- 215 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC----CC--------------------------------------
Confidence 368999999999999999999999999999863211 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+++.+++.|++ ++.++++.+++.++ +.+.+.+.++ ++.+|.||+|
T Consensus 216 -----~~--------------~~~~~~l~~~l~~~GI~--v~~~~~v~~i~~~~-~~~~v~~~~~-----~i~~D~vi~a 268 (468)
T PRK14694 216 -----ED--------------PAVGEAIEAAFRREGIE--VLKQTQASEVDYNG-REFILETNAG-----TLRAEQLLVA 268 (468)
T ss_pred -----CC--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEECCC-----EEEeCEEEEc
Confidence 00 56677788888888998 99999999998655 5455544332 6999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 269 ~G--~~pn~~ 276 (468)
T PRK14694 269 TG--RTPNTE 276 (468)
T ss_pred cC--CCCCcC
Confidence 99 566554
No 256
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.65 E-value=3.4e-07 Score=85.50 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 103 EEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+.+.+.+.+++.+ ++ +.++++|+++...+++.|.+++.+ ..+...++.+++||+|+|.|+..
T Consensus 183 ~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 567777777777776 67 899999999998653558887654 11112368999999999987643
No 257
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.65 E-value=3.7e-07 Score=86.72 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=39.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~ 45 (354)
.+||||||+| +|+++|..+++.|.+|+|+||.+.+||++....
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~g 58 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSG 58 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcC
Confidence 4799999999 899999999999999999999989999887764
No 258
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.65 E-value=6.2e-07 Score=82.47 Aligned_cols=59 Identities=20% Similarity=0.082 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
...+...+.+.+.+.|++ +..+++|+++...+++. +.+.+.++ ++.++.||+|+|.|+.
T Consensus 182 p~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~~~v~t~~g-----~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVD--IIQNCEVTGFIRRDGGRVIGVETTRG-----FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEeCCc-----eEECCEEEECCChhhH
Confidence 345666667777888988 88999999998643243 44666554 6899999999997653
No 259
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.64 E-value=4.9e-07 Score=92.98 Aligned_cols=42 Identities=31% Similarity=0.414 Sum_probs=37.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
..||||||+|.||++||.++++.|.+|+|+||.+..||....
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~ 450 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAK 450 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhh
Confidence 368999999999999999999999999999999888876543
No 260
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.64 E-value=2.9e-07 Score=89.00 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
..+...+.+.+.+.+++ +..++.++++..+++....+...+ .++....+.++.||+|||.++.
T Consensus 158 ~~l~~~L~~~~~~~gv~--i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVP--VHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHHHHHHHhCCCE--EEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 44556666777777888 899999999987652233344332 2333457889999999997553
No 261
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.63 E-value=8.6e-07 Score=87.86 Aligned_cols=101 Identities=20% Similarity=0.164 Sum_probs=78.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||||+.|+.+|..|++.|.+|+|+++.+.+-. . .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~---~--------------------------------------~ 184 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA---E--------------------------------------Q 184 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh---h--------------------------------------h
Confidence 5799999999999999999999999999998653210 0 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeecCCceEEEEeCEEEEe
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. ....+.+++.+++.|++ ++++..+.+|..++. ....+...++. ++.+|.||+|
T Consensus 185 ----ld--------------~~~~~~l~~~L~~~GV~--v~~~~~v~~I~~~~~~~~~~v~~~dG~----~i~~D~Vv~A 240 (847)
T PRK14989 185 ----LD--------------QMGGEQLRRKIESMGVR--VHTSKNTLEIVQEGVEARKTMRFADGS----ELEVDFIVFS 240 (847)
T ss_pred ----cC--------------HHHHHHHHHHHHHCCCE--EEcCCeEEEEEecCCCceEEEEECCCC----EEEcCEEEEC
Confidence 00 56677888888889999 999999999976431 33456666664 8999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| .+|+.
T Consensus 241 ~G--~rPn~ 247 (847)
T PRK14989 241 TG--IRPQD 247 (847)
T ss_pred CC--cccCc
Confidence 99 66664
No 262
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.63 E-value=2.9e-07 Score=88.22 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=31.1
Q ss_pred EEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc
Q 018550 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (354)
Q Consensus 5 vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g 38 (354)
|+|||+|.||++||..+++.|.+|+|+||.+.++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6999999999999999999999999999986443
No 263
>PRK13748 putative mercuric reductase; Provisional
Probab=98.63 E-value=6e-07 Score=86.08 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=77.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.. + +..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~---l~~-------------------------------------- 307 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST-L---FFR-------------------------------------- 307 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-c---ccc--------------------------------------
Confidence 3689999999999999999999999999999742 1 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ +++++.+.++..++ +.+.+...++ ++.+|.|++|
T Consensus 308 -----~d--------------~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~-~~~~v~~~~~-----~i~~D~vi~a 360 (561)
T PRK13748 308 -----ED--------------PAIGEAVTAAFRAEGIE--VLEHTQASQVAHVD-GEFVLTTGHG-----ELRADKLLVA 360 (561)
T ss_pred -----cC--------------HHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEecCC-----eEEeCEEEEc
Confidence 00 56777888888888999 99999999998755 5555554432 6899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 361 ~G--~~pn~~ 368 (561)
T PRK13748 361 TG--RAPNTR 368 (561)
T ss_pred cC--CCcCCC
Confidence 99 666654
No 264
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.62 E-value=9.7e-07 Score=84.55 Aligned_cols=43 Identities=37% Similarity=0.491 Sum_probs=38.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
..||+|||+|++|+++|..++++|.+|+|+||....||.....
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s 51 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFS 51 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcccee
Confidence 4689999999999999999999999999999998887665544
No 265
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.62 E-value=5.9e-07 Score=85.52 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=39.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~ 45 (354)
++||+|||+|.+|+++|..+++.|.+|+|||+.+..||.+....
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~ 49 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSG 49 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceec
Confidence 57899999999999999999999999999999877887765543
No 266
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.62 E-value=1.8e-07 Score=88.76 Aligned_cols=161 Identities=14% Similarity=0.069 Sum_probs=83.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC--CCCCCC----------Ccccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~ 69 (354)
..||+|||+|.||++||..+++ |.+|+|+||.+..++......+...-.. ...++. ...+..+...+
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~~ 87 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRFL 87 (553)
T ss_pred cCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4689999999999999999964 9999999998766654433322111000 001110 01111112222
Q ss_pred hhcccccccccc--CCCCCccC-------CCCCCCCCC-C---CCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeC
Q 018550 70 RVNLPRELMGFQ--AYPFVARN-------YEGSVDLRR-Y---PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVE 135 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~-~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~ 135 (354)
..+.+.....+. +.++.... ......... + .....+...+.+.+.+ .+++ +..++.++++..++
T Consensus 88 ~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~--i~~~~~v~~Li~~~ 165 (553)
T PRK07395 88 VEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIE--IISQALALSLWLEP 165 (553)
T ss_pred HHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcE--EEECcChhhheecC
Confidence 222221111111 11221100 000000000 0 1235667777776654 4787 89999999998753
Q ss_pred C-C-cEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 136 S-N-KWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 136 ~-~-~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
+ + ...+...+ ++....+.++.||+|||..+
T Consensus 166 ~~g~v~Gv~~~~-~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 166 ETGRCQGISLLY-QGQITWLRAGAVILATGGGG 197 (553)
T ss_pred CCCEEEEEEEEE-CCeEEEEEcCEEEEcCCCCc
Confidence 1 2 22233322 22334688999999999643
No 267
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.62 E-value=7.8e-07 Score=82.84 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=37.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~----g~~v~lie~~~~~gg~~~~ 43 (354)
+++++|||||.||+++|..|.+. |.+|+|+|+.+.+||.+.-
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~ 67 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDG 67 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccC
Confidence 46899999999999999999995 6799999999999988653
No 268
>PTZ00367 squalene epoxidase; Provisional
Probab=98.61 E-value=7.4e-08 Score=91.09 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3689999999999999999999999999999964
No 269
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.61 E-value=8e-07 Score=83.59 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=77.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++. .+ +..
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~---l~~--------------------------------------- 219 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IP---LRG--------------------------------------- 219 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cc---ccc---------------------------------------
Confidence 58999999999999999999999999999863 21 000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+ . .++.+.+++.+++.+++ +..++.+.++...+ +...+...++. ++.+|.|++|+
T Consensus 220 ~----d--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~-~~~~v~~~~g~----~i~~D~vl~a~ 274 (499)
T PTZ00052 220 F----D--------------RQCSEKVVEYMKEQGTL--FLEGVVPINIEKMD-DKIKVLFSDGT----TELFDTVLYAT 274 (499)
T ss_pred C----C--------------HHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcC-CeEEEEECCCC----EEEcCEEEEee
Confidence 0 0 56677888888888998 99999999888755 44556665553 68999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|+..
T Consensus 275 G--~~pn~~ 281 (499)
T PTZ00052 275 G--RKPDIK 281 (499)
T ss_pred C--CCCCcc
Confidence 9 666654
No 270
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.60 E-value=1.1e-06 Score=82.27 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=77.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||||+.|+.+|..|++.|.+|+++++. .+ +..
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~---l~~--------------------------------------- 217 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL---LRG--------------------------------------- 217 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cc---ccc---------------------------------------
Confidence 57999999999999999999999999999873 22 000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+ . .++.+++++.+++.|++ +++++.+.++...+ +...+...++.+ ..++++|.|++|+
T Consensus 218 ~----d--------------~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~~~~-~~~i~~D~vl~a~ 275 (484)
T TIGR01438 218 F----D--------------QDCANKVGEHMEEHGVK--FKRQFVPIKVEQIE-AKVKVTFTDSTN-GIEEEYDTVLLAI 275 (484)
T ss_pred c----C--------------HHHHHHHHHHHHHcCCE--EEeCceEEEEEEcC-CeEEEEEecCCc-ceEEEeCEEEEEe
Confidence 0 0 66777888888888999 99999998988755 455565544321 2378999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|+..
T Consensus 276 G--~~pn~~ 282 (484)
T TIGR01438 276 G--RDACTR 282 (484)
T ss_pred c--CCcCCC
Confidence 9 566554
No 271
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.59 E-value=8.8e-07 Score=84.06 Aligned_cols=41 Identities=39% Similarity=0.533 Sum_probs=34.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
..||+|||+|.||++||..+++. .+|+|+||....++....
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~ 48 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFY 48 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhh
Confidence 46899999999999999999987 899999998766654333
No 272
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.59 E-value=1.2e-06 Score=82.65 Aligned_cols=41 Identities=32% Similarity=0.476 Sum_probs=36.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
..||||||+| +|+++|.++++.|.+|+|+||.+..||....
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~ 47 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAY 47 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceec
Confidence 4699999999 9999999999999999999998777765544
No 273
>PRK12839 hypothetical protein; Provisional
Probab=98.58 E-value=1.4e-06 Score=82.97 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=39.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~ 45 (354)
..||+|||+|.+|+++|..+++.|.+|+|+|+.+.+||.+....
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~ 51 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSG 51 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccC
Confidence 36899999999999999999999999999999888888766543
No 274
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.57 E-value=3.7e-07 Score=77.18 Aligned_cols=164 Identities=20% Similarity=0.270 Sum_probs=93.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC-------CCCCCCC--CCCC----------ccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-------SDPLGVD--PNRY----------PVHSS 64 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~-------~~~~~~~--~~~~----------~~~~~ 64 (354)
.|||||+|.||++++..+...+-.|+++|+...+||.-..+.... +...+.. |+-. -....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 599999999999999999998878999999988987766543322 1111111 1111 11111
Q ss_pred ccccchhcccccccccc-CCCCCccC---C------CCCCCCCCCCCHHHHHHHHHHHHHHhCCc----ceEEeceEEEE
Q 018550 65 LYKSLRVNLPRELMGFQ-AYPFVARN---Y------EGSVDLRRYPGHEEVLRYLQNFAREFGVD----QVVRLHTEVLN 130 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~~~~~---~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~v~~~~~v~~ 130 (354)
+...+..+.+.....+. .|...... + .-.......|+..++...+....+++..+ ..+..+++|++
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 22222222222211111 01111000 0 00112223445566666665555543211 23778999999
Q ss_pred EEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 131 ARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 131 i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
|.++++.-..|..-+..++...+.++.||+|||.++.
T Consensus 171 il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 171 ILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred eecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 9976634455666566666678899999999998664
No 275
>PLN02546 glutathione reductase
Probab=98.57 E-value=1.2e-06 Score=83.05 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=76.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~---------------------------------------- 291 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGF---------------------------------------- 291 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccccc----------------------------------------
Confidence 3689999999999999999999999999999865431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++..++.+.+++.|++ +++++.+.++...+++...+...++ ....+|.|++|
T Consensus 292 ------d--------------~~~~~~l~~~L~~~GV~--i~~~~~v~~i~~~~~g~v~v~~~~g----~~~~~D~Viva 345 (558)
T PLN02546 292 ------D--------------EEVRDFVAEQMSLRGIE--FHTEESPQAIIKSADGSLSLKTNKG----TVEGFSHVMFA 345 (558)
T ss_pred ------C--------------HHHHHHHHHHHHHCCcE--EEeCCEEEEEEEcCCCEEEEEECCe----EEEecCEEEEe
Confidence 0 66777888888888999 9999999999865424344443322 23458999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 346 ~G--~~Pnt~ 353 (558)
T PLN02546 346 TG--RKPNTK 353 (558)
T ss_pred ec--cccCCC
Confidence 99 666654
No 276
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.57 E-value=7.1e-07 Score=85.22 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=84.4
Q ss_pred eEEEEcCChHHHHHHHHHH----HcCCcEEEEeeCCCccceeecCCC--CCCCCCC-----CCCCCC----------ccc
Q 018550 4 HVAVIGAGAAGLVVGHELL----REGHTVVVYEKGEQVGGSWIYTSE--TESDPLG-----VDPNRY----------PVH 62 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~----~~g~~v~lie~~~~~gg~~~~~~~--~~~~~~~-----~~~~~~----------~~~ 62 (354)
||+|||+|.||++||.+++ +.|.+|+|+||....+... .+.+ ..+..+. ..|+.. +.+
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 6999999999999999998 6799999999975432222 1211 0111110 111110 111
Q ss_pred ccccccchhcccccccccc--CCCCCccCCCCCCCCC----CCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC-
Q 018550 63 SSLYKSLRVNLPRELMGFQ--AYPFVARNYEGSVDLR----RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE- 135 (354)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~- 135 (354)
..+...+..+.+..+..+. +.++............ .......+...+...+.+.+++ +..++.++++..++
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~--i~~~~~v~~Ll~d~~ 157 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGD--IFERIFIVKLLLDKN 157 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCe--EEcccEEEEEEecCC
Confidence 1122223333333222222 2223211000000000 0011234444555555554555 88899999998754
Q ss_pred --CCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 136 --SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 136 --~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
+....+...+ .++....+.++.||+|||.++....|
T Consensus 158 ~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~ 196 (614)
T TIGR02061 158 TPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRP 196 (614)
T ss_pred CCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccccCC
Confidence 1233344322 22334678999999999987654433
No 277
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.57 E-value=7.7e-07 Score=81.95 Aligned_cols=99 Identities=27% Similarity=0.441 Sum_probs=78.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||+|+.|+.+|..|+++|++|+++|+.+.+++....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------------------------------- 177 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------------------------------- 177 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh---------------------------------------
Confidence 68999999999999999999999999999998766444321
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE---EEEeecCCceEEEEeCEEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK---VKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~---v~~~~g~~~~~~~~~d~vI 159 (354)
..+.+.+.+..+..+++ ++++..+.+++... +... +...++. .+++|.++
T Consensus 178 --------------------~~~~~~~~~~l~~~gi~--~~~~~~~~~i~~~~-~~~~~~~~~~~~~~----~~~~d~~~ 230 (415)
T COG0446 178 --------------------PEVAEELAELLEKYGVE--LLLGTKVVGVEGKG-NTLVVERVVGIDGE----EIKADLVI 230 (415)
T ss_pred --------------------HHHHHHHHHHHHHCCcE--EEeCCceEEEEccc-CcceeeEEEEeCCc----EEEeeEEE
Confidence 34667888888888988 89999999999765 3322 3444443 89999999
Q ss_pred EeeCCCCCcc
Q 018550 160 VCNGHFSVPR 169 (354)
Q Consensus 160 lAtG~~s~~~ 169 (354)
+++| ..|+
T Consensus 231 ~~~g--~~p~ 238 (415)
T COG0446 231 IGPG--ERPN 238 (415)
T ss_pred Eeec--cccc
Confidence 9999 5554
No 278
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=8.1e-08 Score=89.06 Aligned_cols=42 Identities=40% Similarity=0.564 Sum_probs=39.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||+||++||++|.+.|++|+|+|+++.+||....
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEE
Confidence 478999999999999999999999999999999999988654
No 279
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.56 E-value=2.1e-06 Score=79.31 Aligned_cols=91 Identities=31% Similarity=0.409 Sum_probs=71.3
Q ss_pred CeEEEEcCChHHHHHHHHHHH--------------cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLR--------------EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~--------------~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (354)
++|+|||||+.|+.+|..|++ .+.+|+++++.+.+...
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~---------------------------- 225 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS---------------------------- 225 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc----------------------------
Confidence 389999999999999999976 36899999986543110
Q ss_pred chhccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 69 LRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
++ ..+.+++++.+++.|++ ++++++|.++.. + .+.+.+|+
T Consensus 226 ------------------------------~~--~~~~~~~~~~L~~~gV~--v~~~~~v~~v~~---~--~v~~~~g~- 265 (424)
T PTZ00318 226 ------------------------------FD--QALRKYGQRRLRRLGVD--IRTKTAVKEVLD---K--EVVLKDGE- 265 (424)
T ss_pred ------------------------------CC--HHHHHHHHHHHHHCCCE--EEeCCeEEEEeC---C--EEEECCCC-
Confidence 00 56778888888889999 999999999864 2 35566664
Q ss_pred ceEEEEeCEEEEeeCC
Q 018550 149 VVEEETFDAVVVCNGH 164 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~ 164 (354)
++++|.+|.|+|.
T Consensus 266 ---~i~~d~vi~~~G~ 278 (424)
T PTZ00318 266 ---VIPTGLVVWSTGV 278 (424)
T ss_pred ---EEEccEEEEccCC
Confidence 8999999999994
No 280
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.55 E-value=1.5e-06 Score=82.77 Aligned_cols=43 Identities=35% Similarity=0.607 Sum_probs=37.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC--CccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~--~~gg~~~~~ 44 (354)
..||+|||+|.||++||..+++.|.+|+|+||.+ ..||.....
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s 48 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWS 48 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceecc
Confidence 4799999999999999999999999999999988 567765443
No 281
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.54 E-value=1.1e-06 Score=84.23 Aligned_cols=44 Identities=36% Similarity=0.413 Sum_probs=39.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~ 45 (354)
.++|+|||+|.+|+++|..++++|.+|+|+|+.+.+||......
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~ 59 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSA 59 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccC
Confidence 46899999999999999999999999999999888887776543
No 282
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.54 E-value=1.6e-06 Score=83.34 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~---------------------------------------- 351 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLL---------------------------------------- 351 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccC----------------------------------------
Confidence 3689999999999999999999999999999976431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCcceEEeceEEEEEEEeCCC-cEEEEEee---cCC--------
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESN-KWKVKSRK---KDD-------- 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~---g~~-------- 148 (354)
. .++.+++.+.. ++.+++ ++.++.|.++...++. ...+...+ +++
T Consensus 352 ------d--------------~eis~~l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 409 (659)
T PTZ00153 352 ------D--------------ADVAKYFERVFLKSKPVR--VHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMN 409 (659)
T ss_pred ------C--------------HHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecCCceEEEEEEeccccccccccccccc
Confidence 0 55666776654 567888 9999999999875422 24444322 110
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCC
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQ 172 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~ 172 (354)
..+++++|.|++|+| .+|+...
T Consensus 410 ~~~~i~aD~VlvAtG--r~Pnt~~ 431 (659)
T PTZ00153 410 DIKETYVDSCLVATG--RKPNTNN 431 (659)
T ss_pred cceEEEcCEEEEEEC--cccCCcc
Confidence 113799999999999 6666543
No 283
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.54 E-value=1.7e-06 Score=73.45 Aligned_cols=35 Identities=37% Similarity=0.633 Sum_probs=33.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|+|||||.||++|+.+|+++|.++.++.++.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 78999999999999999999999999999999853
No 284
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.52 E-value=1.4e-06 Score=83.04 Aligned_cols=43 Identities=37% Similarity=0.492 Sum_probs=38.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
..||+|||+|++|+++|..++++|.+|+||||.+.+||.....
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~ 49 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARS 49 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccccc
Confidence 4689999999999999999999999999999988777765544
No 285
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.51 E-value=9.1e-07 Score=83.45 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=81.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC-ccceeecCCCCCCCCCC--CCCCC----------Cccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPLG--VDPNR----------YPVHSSLYKS 68 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~-~gg~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~ 68 (354)
..||+|||+|.||++||..++ +.+|+|+||.+. .++......+......+ ..|+. ...+......
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v~~ 86 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVAAL 86 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHHHH
Confidence 468999999999999999997 569999999765 34333322211110011 11110 0111111112
Q ss_pred chhcccccccccc--CCCCCccCC---C---CCC-CC-C-----CCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEE
Q 018550 69 LRVNLPRELMGFQ--AYPFVARNY---E---GSV-DL-R-----RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR 132 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~---~---~~~-~~-~-----~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~ 132 (354)
+..+.+..+..+. +.++..... . ... .. . .-.....+.+.+.+.+.+. +++ +..++.++++.
T Consensus 87 ~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~--i~~~~~v~~Li 164 (513)
T PRK07512 87 ITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSIT--VLEGAEARRLL 164 (513)
T ss_pred HHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCE--EEECcChhhee
Confidence 2222221111111 122211000 0 000 00 0 0012356777777777654 787 88899999987
Q ss_pred EeCCCc-EEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 133 LVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 133 ~~~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
.++ +. ..+...+.. ....+.++.||+|||..+
T Consensus 165 ~~~-g~v~Gv~~~~~~-~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 165 VDD-GAVAGVLAATAG-GPVVLPARAVVLATGGIG 197 (513)
T ss_pred ecC-CEEEEEEEEeCC-eEEEEECCEEEEcCCCCc
Confidence 654 43 234433322 124689999999999754
No 286
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.51 E-value=2.5e-06 Score=76.12 Aligned_cols=42 Identities=36% Similarity=0.550 Sum_probs=38.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
..+|+|||+|.+||.+|..|.+.|++|+|+|.++.+||.+..
T Consensus 7 ~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 368999999999999999999999999999999999977543
No 287
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=1.1e-06 Score=79.87 Aligned_cols=150 Identities=18% Similarity=0.093 Sum_probs=84.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccc--cccccchhccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS--SLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (354)
+||+|||||.||+.||.+.++.|.++.|+--+..-=|.+.-+|.+. -.....+... ++--.+-.......+++
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIG-----G~~KG~lvrEIDALGG~Mg~~~D~~~IQ~ 79 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIG-----GPGKGHLVREIDALGGLMGKAADKAGIQF 79 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccC-----CcccceeEEeehhccchHHHhhhhcCCch
Confidence 7999999999999999999999999999987544334444333221 0001000000 00001111111111111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCC-cEEEEEeecCCceEEEEeCEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~~d~v 158 (354)
.-+......+ -.......++..+..+++..++.. ++. .++..|.++..+++. .+.|.+.+|. .+.++.|
T Consensus 80 r~LN~sKGPA--Vra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G~----~~~a~aV 150 (621)
T COG0445 80 RMLNSSKGPA--VRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADGP----EFHAKAV 150 (621)
T ss_pred hhccCCCcch--hcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCCC----eeecCEE
Confidence 1000000000 001112234456677777777654 444 566888888876533 5778888886 9999999
Q ss_pred EEeeCCCC
Q 018550 159 VVCNGHFS 166 (354)
Q Consensus 159 IlAtG~~s 166 (354)
|++||.+-
T Consensus 151 VlTTGTFL 158 (621)
T COG0445 151 VLTTGTFL 158 (621)
T ss_pred EEeecccc
Confidence 99999643
No 288
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.42 E-value=3.6e-06 Score=78.00 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE--EEeecCCceEEEEeCEEEEeeCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v--~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
...+.+.+.+.+++.+++ ++++++|+++..++++.+.+ ...++ ...+.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~g~v~gv~~~~~---~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFDGAHDGPLTTVG---THRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCCCeEEEEEEcCC---cEEEEcCEEEEcCCCcc
Confidence 356788888888888998 99999999998753123333 22222 14789999999999643
No 289
>PRK10262 thioredoxin reductase; Provisional
Probab=98.42 E-value=4.3e-06 Score=74.31 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=74.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+ ..
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~----~~-------------------------------------- 183 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF----RA-------------------------------------- 183 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc----CC--------------------------------------
Confidence 368999999999999999999999999999986432 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC--CceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~~~d~vI 159 (354)
...+.+.+++.+++.+++ +..++.++++..++.+...+++.++. +...++++|.||
T Consensus 184 --------------------~~~~~~~~~~~l~~~gV~--i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv 241 (321)
T PRK10262 184 --------------------EKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 241 (321)
T ss_pred --------------------CHHHHHHHHhhccCCCeE--EEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEE
Confidence 033445556666666787 88899999997643122234444321 223579999999
Q ss_pred EeeCCCCCcccC
Q 018550 160 VCNGHFSVPRLA 171 (354)
Q Consensus 160 lAtG~~s~~~~p 171 (354)
+|+| ..|+..
T Consensus 242 ~a~G--~~p~~~ 251 (321)
T PRK10262 242 VAIG--HSPNTA 251 (321)
T ss_pred EEeC--CccChh
Confidence 9999 566544
No 290
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.42 E-value=9.1e-07 Score=81.96 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE--EEEEeecCCceEEEEeCEEEEeeCC
Q 018550 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW--KVKSRKKDDVVEEETFDAVVVCNGH 164 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~--~v~~~~g~~~~~~~~~d~vIlAtG~ 164 (354)
.++..+.++|.+.+.+.|++ +.. .+|+++..++ +++ .|.+.+| .++.+|++|-|+|.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~--~~~-g~V~~v~~~~-~g~i~~v~~~~g----~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVE--VIE-GTVVDVELDE-DGRITAVRLDDG----RTIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEE-T-EEEEEE-T-TSEEEEEEETTS----EEEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCE--EEe-CEEEEEEEcC-CCCEEEEEECCC----CEEEEeEEEECCCc
Confidence 36789999999999999999 655 4688888877 554 4555554 38999999999994
No 291
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.39 E-value=4.4e-06 Score=73.27 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=85.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHc------CCcEEEEeeCCCccceeecCCCCCCCCCC---CCCCC-----Cccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPNR-----YPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~------g~~v~lie~~~~~gg~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~ 68 (354)
.||+||||||||+++|..|.+. .++|+++||...+|+...-..-+. |.. +.|+- .+.....-+.
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavie--p~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIE--PGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeec--cchhhhhCcchhhcCCcccccccccc
Confidence 6899999999999999999764 469999999988886654311100 000 00000 0000000011
Q ss_pred chhccccccccccCC-CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEee-
Q 018550 69 LRVNLPRELMGFQAY-PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK- 145 (354)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~- 145 (354)
+.....+..+.++.. ++ ..+.....+..++.+|+-+.++.+|++ +.-+..+.++-.++++. ..+.++|
T Consensus 155 ~~fLt~~~~i~vPv~~pm-------~NhGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~edgsVkGiaT~D~ 225 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPM-------DNHGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDEDGSVKGIATNDV 225 (621)
T ss_pred eeeeccCceeecCCCccc-------ccCCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcCCCcEeeEeeccc
Confidence 111111111111110 00 012222245578999999999999999 77777777877766432 2344433
Q ss_pred -----cCC-----ceEEEEeCEEEEeeCCC
Q 018550 146 -----KDD-----VVEEETFDAVVVCNGHF 165 (354)
Q Consensus 146 -----g~~-----~~~~~~~d~vIlAtG~~ 165 (354)
|.. ..-++.++.-|.|-|+.
T Consensus 226 GI~k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 226 GISKDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred cccCCCCccccccccceecceeEEEecccc
Confidence 110 01467888999999964
No 292
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.37 E-value=4.6e-07 Score=84.87 Aligned_cols=40 Identities=45% Similarity=0.635 Sum_probs=37.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
.+||||||||+.|+++|..|+++|++|+|+||++.+||.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcce
Confidence 5899999999999999999999999999999999998743
No 293
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.37 E-value=2e-06 Score=76.57 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=31.7
Q ss_pred EEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeC
Q 018550 122 VRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNG 163 (354)
Q Consensus 122 v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG 163 (354)
++.+++|++++..+++.|.+++.+. .+...++.+|.||+|||
T Consensus 296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 296 LLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred EeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 7789999999998756999999883 34457899999999999
No 294
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.37 E-value=9.2e-06 Score=72.91 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCc
Q 018550 104 EVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 104 ~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.+.+.+-+.+.+. +.. +.++++|++|.+.+++.|.|.+.+- .+...++.+++|++..|..+-+
T Consensus 182 ~LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFE--LHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHhCCCcE--EEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 4444445555444 677 9999999999998867799998763 2345799999999999975544
No 295
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=5.7e-07 Score=81.51 Aligned_cols=42 Identities=38% Similarity=0.549 Sum_probs=39.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
++|+|+|||.||+++|+.|+++|++|+|+|+++.+||.+.-+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeee
Confidence 589999999999999999999999999999999999887654
No 296
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.34 E-value=6.3e-07 Score=83.65 Aligned_cols=41 Identities=29% Similarity=0.587 Sum_probs=37.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeec
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~ 43 (354)
++|+|||||+||++||+.|++.| ++|+|+|+++.+||.+..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 57999999999999999999988 899999999999987544
No 297
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.34 E-value=7.6e-06 Score=82.38 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
.+||+|||+|.||+++|..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 46899999999999999999999999999999753
No 298
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.32 E-value=2.7e-06 Score=77.11 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g 38 (354)
.+|+|||||++|+.+|..|+++|++|+|||+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999876554
No 299
>PRK07208 hypothetical protein; Provisional
Probab=98.32 E-value=7.8e-07 Score=83.64 Aligned_cols=42 Identities=43% Similarity=0.569 Sum_probs=38.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|+.|+++|++|+|+|+.+.+||.+..
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 478999999999999999999999999999999999987643
No 300
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.31 E-value=9.1e-06 Score=76.90 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=70.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||+.|+.+|..|++.+.+|+++++.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-------------------------------------------- 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-------------------------------------------- 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------
Confidence 689999999999999999999999999999764320
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIl 160 (354)
. ...+.+.+.. .|++ +++++.++++..+++....+.+.++. +..+++++|.|++
T Consensus 389 --------------------~--~~~l~~~l~~~~gV~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~ 444 (515)
T TIGR03140 389 --------------------A--DKVLQDKLKSLPNVD--ILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV 444 (515)
T ss_pred --------------------h--hHHHHHHHhcCCCCE--EEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence 0 1223334443 4788 89999999997653122235555432 2345799999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|+..
T Consensus 445 a~G--~~Pn~~ 453 (515)
T TIGR03140 445 QIG--LVPNTE 453 (515)
T ss_pred EeC--CcCCch
Confidence 999 666654
No 301
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.29 E-value=8.3e-06 Score=73.00 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=83.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
.+|+++|+|..|+.+|..|...+.+|++|++.+.+--.
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~------------------------------------------ 251 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR------------------------------------------ 251 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh------------------------------------------
Confidence 46999999999999999999999999999987532000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE-EEEEeecCCceEEEEeCEEEEe
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.- ..++.+.+.++.++.+++ ++.++.+.+++.+.+++. -+.+.++. ++.+|.||+.
T Consensus 252 ---lf--------------~~~i~~~~~~y~e~kgVk--~~~~t~~s~l~~~~~Gev~~V~l~dg~----~l~adlvv~G 308 (478)
T KOG1336|consen 252 ---LF--------------GPSIGQFYEDYYENKGVK--FYLGTVVSSLEGNSDGEVSEVKLKDGK----TLEADLVVVG 308 (478)
T ss_pred ---hh--------------hHHHHHHHHHHHHhcCeE--EEEecceeecccCCCCcEEEEEeccCC----EeccCeEEEe
Confidence 00 067788888999999999 999999999988764333 35566664 9999999999
Q ss_pred eCCCCCcccCCCC
Q 018550 162 NGHFSVPRLAQVP 174 (354)
Q Consensus 162 tG~~s~~~~p~~~ 174 (354)
+| .+|....+.
T Consensus 309 iG--~~p~t~~~~ 319 (478)
T KOG1336|consen 309 IG--IKPNTSFLE 319 (478)
T ss_pred ec--ccccccccc
Confidence 99 788877665
No 302
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.29 E-value=4.6e-06 Score=78.67 Aligned_cols=163 Identities=20% Similarity=0.186 Sum_probs=85.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCC-------CCCC----------Cccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV-------DPNR----------YPVHSS 64 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~-------~~~~----------~~~~~~ 64 (354)
++||+|||+|.||+.||..+++.|.+|.|+||....++......+..+...+. .|+. .+.+..
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd 85 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQD 85 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCHH
Confidence 57999999999999999999999999999999766553322222211111111 1111 111122
Q ss_pred ccccchhcccccccccc--CCCCCccCCC--------C-C---CCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEE
Q 018550 65 LYKSLRVNLPRELMGFQ--AYPFVARNYE--------G-S---VDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVL 129 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~-~---~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~ 129 (354)
....+....|.....+. ..++...... . . .....-.....++..+.+.+.+ .++. +..+..+.
T Consensus 86 ~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~--~~~~~~~~ 163 (562)
T COG1053 86 AVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIE--IFDEYFVL 163 (562)
T ss_pred HHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcch--hhhhhhhh
Confidence 22233333333333222 1122111000 0 0 0000112235566666666655 4444 56677778
Q ss_pred EEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 130 NARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 130 ~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
++..++++ ...+...+ .++....+.++.||+|||...
T Consensus 164 ~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 164 DLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred hheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 88766533 23333222 223346778899999999644
No 303
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=98.28 E-value=7.9e-06 Score=71.99 Aligned_cols=100 Identities=22% Similarity=0.367 Sum_probs=74.3
Q ss_pred eEEEEcCChHHHHHHHHHHHc--------------CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLRE--------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL 69 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~--------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (354)
++|||||||.|+.+|.+|+.. .++|+++|+.+.+ ..
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i----L~-------------------------- 269 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI----LN-------------------------- 269 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH----HH--------------------------
Confidence 689999999999999999853 4689999987633 00
Q ss_pred hhccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
|+ ...+.+|.++...+.++. ++.++.|..+.. ..+....++++
T Consensus 270 -------mF-----------------------dkrl~~yae~~f~~~~I~--~~~~t~Vk~V~~-----~~I~~~~~~g~ 312 (491)
T KOG2495|consen 270 -------MF-----------------------DKRLVEYAENQFVRDGID--LDTGTMVKKVTE-----KTIHAKTKDGE 312 (491)
T ss_pred -------HH-----------------------HHHHHHHHHHHhhhccce--eecccEEEeecC-----cEEEEEcCCCc
Confidence 00 056677777777777888 899999988854 33555554555
Q ss_pred eEEEEeCEEEEeeCCCCCccc
Q 018550 150 VEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~ 170 (354)
..+++|-.+|-|||...+|..
T Consensus 313 ~~~iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 313 IEEIPYGLLVWATGNGPRPVI 333 (491)
T ss_pred eeeecceEEEecCCCCCchhh
Confidence 689999999999996555543
No 304
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.27 E-value=1.5e-06 Score=76.22 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=66.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------------------------------------------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------------------------------------------- 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---------------------------------------------- 231 (354)
..|+|||+|++|+-+|..+++.|.+|.++.+.+.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 4699999999999999999999999999998773
Q ss_pred -------------------------------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcc
Q 018550 232 -------------------------------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCT 276 (354)
Q Consensus 232 -------------------------------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~ 276 (354)
+-+++++++.+ ++++++.|..++.++. +.+.+|+++.||.+|+||
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAt 163 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILAT 163 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEec
Confidence 11223333444 8999999999997752 777778899999999999
Q ss_pred cCC
Q 018550 277 GLT 279 (354)
Q Consensus 277 G~~ 279 (354)
|-.
T Consensus 164 GG~ 166 (408)
T COG2081 164 GGK 166 (408)
T ss_pred CCc
Confidence 944
No 305
>PLN02268 probable polyamine oxidase
Probab=98.27 E-value=1.1e-06 Score=81.62 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=38.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.+|+|||||.+|++||+.|.+.|++|+|+|+++.+||.+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 47999999999999999999999999999999999988764
No 306
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.27 E-value=1.6e-05 Score=69.86 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+ ..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~----~~-------------------------------------- 178 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF----RA-------------------------------------- 178 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc----Cc--------------------------------------
Confidence 368999999999999999999999999999986422 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vI 159 (354)
...+.+.+.+. +++ +.+++.+.++..++ ....+...+. .+..+++++|.+|
T Consensus 179 ------------------------~~~~~~~l~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 179 ------------------------EKILLDRLRKNPNIE--FLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred ------------------------CHHHHHHHHhCCCeE--EEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEE
Confidence 01223334444 777 88899999998643 3233444331 1223689999999
Q ss_pred EeeCCCCCccc
Q 018550 160 VCNGHFSVPRL 170 (354)
Q Consensus 160 lAtG~~s~~~~ 170 (354)
+|+| ..|..
T Consensus 232 ~a~G--~~~~~ 240 (300)
T TIGR01292 232 IAIG--HEPNT 240 (300)
T ss_pred EeeC--CCCCh
Confidence 9999 55544
No 307
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.26 E-value=1.3e-06 Score=81.88 Aligned_cols=42 Identities=31% Similarity=0.489 Sum_probs=38.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~----g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|+.|.++ |++|+|+|+++.+||.+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 57899999999999999999998 9999999999999977553
No 308
>PRK07233 hypothetical protein; Provisional
Probab=98.24 E-value=1.4e-06 Score=80.90 Aligned_cols=39 Identities=38% Similarity=0.723 Sum_probs=36.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+|+|||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 699999999999999999999999999999999998653
No 309
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.23 E-value=3.2e-05 Score=70.05 Aligned_cols=93 Identities=22% Similarity=0.293 Sum_probs=67.9
Q ss_pred CeEEEEcCChHHHHHHHHHHH----cC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLR----EG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~----~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
++|+|||+|++|+.+|..|++ .| .+|+++ ..+.+.. .
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~---~--------------------------------- 188 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLP---G--------------------------------- 188 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccc---c---------------------------------
Confidence 589999999999999999975 34 478888 3322100 0
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
+ ...+...+.+.+++.+++ +..++++.+++. + .+.+.++. ++.+|
T Consensus 189 ----------------------~--~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~---~--~v~~~~g~----~i~~D 233 (364)
T TIGR03169 189 ----------------------F--PAKVRRLVLRLLARRGIE--VHEGAPVTRGPD---G--ALILADGR----TLPAD 233 (364)
T ss_pred ----------------------C--CHHHHHHHHHHHHHCCCE--EEeCCeeEEEcC---C--eEEeCCCC----EEecC
Confidence 0 045667778888888999 999999988852 3 45555554 89999
Q ss_pred EEEEeeCCCCCcc
Q 018550 157 AVVVCNGHFSVPR 169 (354)
Q Consensus 157 ~vIlAtG~~s~~~ 169 (354)
.||+|+| ..|.
T Consensus 234 ~vi~a~G--~~p~ 244 (364)
T TIGR03169 234 AILWATG--ARAP 244 (364)
T ss_pred EEEEccC--CChh
Confidence 9999999 5554
No 310
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.23 E-value=1.7e-06 Score=77.61 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=38.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
++||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 368999999999999999999999999999999899987654
No 311
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.22 E-value=1e-05 Score=69.48 Aligned_cols=41 Identities=37% Similarity=0.579 Sum_probs=35.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||+|++|++||..|+++ .+|+|||.+..+||.-+.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccce
Confidence 46899999999999999999874 689999999999977554
No 312
>PLN02576 protoporphyrinogen oxidase
Probab=98.20 E-value=2e-06 Score=81.30 Aligned_cols=42 Identities=38% Similarity=0.586 Sum_probs=38.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+++|+.|.+. |++|+|+|+++.+||.+..
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 46899999999999999999999 9999999999999987653
No 313
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.19 E-value=2.1e-06 Score=78.03 Aligned_cols=41 Identities=34% Similarity=0.587 Sum_probs=38.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeec
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~ 43 (354)
++|+|||||++|+++|+.|.+++ .+++|||+++.+||....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 57999999999999999999999 999999999999988664
No 314
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.19 E-value=2e-06 Score=80.47 Aligned_cols=42 Identities=31% Similarity=0.431 Sum_probs=37.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc------CCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~------g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|+.|.+. |.+|+|+|+++.+||.+..
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 46799999999999999999986 3799999999999987553
No 315
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.18 E-value=2.1e-06 Score=80.94 Aligned_cols=40 Identities=40% Similarity=0.509 Sum_probs=36.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
.+||+|||||++|+++|..|++.|++|+|+|+++.+||.+
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 3689999999999999999999999999999999898653
No 316
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.18 E-value=8.5e-06 Score=72.91 Aligned_cols=134 Identities=17% Similarity=0.129 Sum_probs=82.2
Q ss_pred CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCc------ccccccccchhcccccccccc-CCCCCccCCCCCCCCC
Q 018550 25 GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP------VHSSLYKSLRVNLPRELMGFQ-AYPFVARNYEGSVDLR 97 (354)
Q Consensus 25 g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 97 (354)
|.+|+|+|+++.+|......++-..+-....+...+ ...+.+..+..+.+.+...|. +...... .+...+
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~---~e~~gr 77 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETF---VGSSGR 77 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceE---ECCCCE
Confidence 568999999999987666655444211111110000 012234444444444444432 2222111 123455
Q ss_pred CCC---CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcc
Q 018550 98 RYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 98 ~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
.|| ...++.+.+...+++.+++ ++++++|.+| ++ +.|.+.+..+. ..+.+|.||+|||..+.|.
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i--~~-~~~~v~~~~~~---~~~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGW--QG-GTLRFETPDGQ---STIEADAVVLALGGASWSQ 144 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEE--eC-CcEEEEECCCc---eEEecCEEEEcCCCccccc
Confidence 676 4578999999999999999 9999999999 33 55888775432 3689999999999755443
No 317
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.16 E-value=0.00016 Score=67.32 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|||+|..|+.+|..|.+.|.+|+++++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999864
No 318
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.15 E-value=3e-06 Score=76.37 Aligned_cols=37 Identities=38% Similarity=0.524 Sum_probs=34.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~ 37 (354)
|+++|+|||||++|+.+|..|+++|++|+|+|+.+..
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 6789999999999999999999999999999986644
No 319
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.14 E-value=4.3e-05 Score=68.16 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
..+...+++.+..+|++ ++++++|.++...++....+.+.+|. ++.+|+||+|.|+.++
T Consensus 173 ~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~~~~v~~~~g~----~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNEVLGVKLTKGE----EIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCceEEEEccCCc----EEecCEEEEccCcchH
Confidence 57788889999999988 99999999999876345667777765 8999999999998554
No 320
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.13 E-value=3.7e-05 Score=69.25 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCc-EEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~-v~lie~~~ 35 (354)
++|+|||+|+.|+.+|..|.+.|.+ |+++++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 6899999999999999999999997 99999753
No 321
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.12 E-value=3e-05 Score=73.51 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=70.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||..|+.+|..|+..+.+|+++++.+.+. .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~----~--------------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK----A--------------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc----c---------------------------------------
Confidence 689999999999999999999999999999865320 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcE-EEEEeecC-CceEEEEeCEEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKKD-DVVEEETFDAVV 159 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~-~~~~~~~~d~vI 159 (354)
. ..+.+.+.. .+++ +++++.++++..++ +.. .+...+.. +...++.+|.++
T Consensus 389 --------------------~---~~l~~~l~~~~gI~--i~~~~~v~~i~~~~-g~v~~v~~~~~~~g~~~~i~~D~v~ 442 (517)
T PRK15317 389 --------------------D---QVLQDKLRSLPNVT--IITNAQTTEVTGDG-DKVTGLTYKDRTTGEEHHLELEGVF 442 (517)
T ss_pred --------------------c---HHHHHHHhcCCCcE--EEECcEEEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEEE
Confidence 1 223333333 4777 99999999998654 332 34554422 234579999999
Q ss_pred EeeCCCCCcccC
Q 018550 160 VCNGHFSVPRLA 171 (354)
Q Consensus 160 lAtG~~s~~~~p 171 (354)
+|+| ..|+..
T Consensus 443 ~~~G--~~p~~~ 452 (517)
T PRK15317 443 VQIG--LVPNTE 452 (517)
T ss_pred EeEC--CccCch
Confidence 9999 566543
No 322
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.11 E-value=2.9e-06 Score=80.28 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH 164 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~ 164 (354)
..+.+.+.+.+++.|.+ ++++++|.+|..+++..+.|.+.++. ++.+|.||+|++.
T Consensus 219 ~~l~~al~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~V~~~~g~----~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGE--LRLNAEVIRIETEGGRATAVHLADGE----RLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCE--EEECCeEEEEEeeCCEEEEEEECCCC----EEECCEEEECCcH
Confidence 45566667777777888 99999999998765234667776664 7899999999884
No 323
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=4.5e-06 Score=70.80 Aligned_cols=42 Identities=26% Similarity=0.458 Sum_probs=39.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
++|++|||||.+|+.+|..|+++|.+|.|+||++++||.|-.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 478999999999999999999999999999999999998865
No 324
>PLN02568 polyamine oxidase
Probab=98.10 E-value=4.4e-06 Score=78.96 Aligned_cols=42 Identities=31% Similarity=0.547 Sum_probs=37.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-----CcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-----HTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-----~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+++|..|++.| ++|+|+|+++.+||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 367999999999999999999987 899999999999987643
No 325
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.09 E-value=3.9e-06 Score=78.35 Aligned_cols=39 Identities=41% Similarity=0.607 Sum_probs=36.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+|+|||||++|+++|+.|.++|++|+|+|+.+.+||.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcc
Confidence 589999999999999999999999999999999998653
No 326
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.06 E-value=5.4e-06 Score=78.18 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
..+.+.+.+.+++.|.+ ++++++|.+|..+++..+.+.+.+++ ++.+|.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~--i~~~~~V~~I~~~~~~~~gv~~~~g~----~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQ--IRYRARVTKIILENGKAVGVKLADGE----KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCE--EEeCCeeeEEEecCCcEEEEEeCCCC----EEEcCEEEECCChHH
Confidence 45667778888888988 99999999998765355667776664 789999999999643
No 327
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.05 E-value=7.1e-06 Score=73.35 Aligned_cols=40 Identities=35% Similarity=0.691 Sum_probs=35.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWI 42 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~ 42 (354)
.+|+|||||.||++||..|.++|+ +++|+|..+.+||...
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 579999999999999999998775 8999999999987643
No 328
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.04 E-value=9.9e-07 Score=72.68 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=61.7
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----------------------c-----cccccCCCCC-CeEEecc
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----------------------D-----ETHEKQPGYD-NMWLHSM 249 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-----------------------~-----~~~~~l~~~~-~~~~~~~ 249 (354)
+|+|||||+.|+.+|..|++.+.+++++.+.+. . ...+++...+ ++++++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999977652 0 1122222333 6777888
Q ss_pred eeEEecCCc-E-----E-----EccCcEEecCEEEEcccCCCccCc
Q 018550 250 VERANEDGT-V-----V-----FRNGRVVSADVIMHCTGLTGTSTT 284 (354)
Q Consensus 250 v~~v~~~~~-v-----~-----~~~g~~~~~D~vi~a~G~~~~~p~ 284 (354)
+.++..... + . ..++.++.+|.+|+|||..+..|+
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 888874433 1 1 123478999999999998854443
No 329
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.03 E-value=3.8e-06 Score=69.34 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=50.4
Q ss_pred EEEccCCCHHHHHHHHhccCCE-EEEEEecCC----------------cccc------ccC-------------------
Q 018550 201 ILIGHYASGLDIKRDLAGFAKE-VHIASRSVA----------------DETH------EKQ------------------- 238 (354)
Q Consensus 201 ~ViG~G~~g~e~a~~l~~~g~~-v~~~~r~~~----------------~~~~------~~l------------------- 238 (354)
+|||+|++|+-+|..|.+.|.+ ++++.+.+. .... ..+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999988 999999853 0000 000
Q ss_pred ------------CCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccC
Q 018550 239 ------------PGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 239 ------------~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~ 278 (354)
++.+ ++..++.|+++..++. |++++++++.||.||+|||.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 0112 4778899999985543 77888878999999999996
No 330
>PLN02529 lysine-specific histone demethylase 1
Probab=98.03 E-value=6.7e-06 Score=79.70 Aligned_cols=42 Identities=38% Similarity=0.514 Sum_probs=38.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+++|..|+++|++|+|+|+.+.+||.+..
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 478999999999999999999999999999999888877653
No 331
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.02 E-value=0.00012 Score=68.44 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|+.+|..|.+.|. +|+++++.+
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999998 899999853
No 332
>PRK12831 putative oxidoreductase; Provisional
Probab=97.99 E-value=0.00012 Score=68.35 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|||+|..|+-+|..|.+.|.+|+++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999753
No 333
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=2.9e-05 Score=69.38 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||||.||+.+|.+.++.|.+.+|+-.+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 479999999999999999999999999999864
No 334
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.98 E-value=5.7e-05 Score=68.19 Aligned_cols=156 Identities=18% Similarity=0.158 Sum_probs=85.3
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC-CCCC--CCCCCCCCCC----------Ccccccccccch
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT-SETE--SDPLGVDPNR----------YPVHSSLYKSLR 70 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~--~~~~~~~~~~----------~~~~~~~~~~~~ 70 (354)
+|+|||+|.||+++|..|.+. ++|+|+.|.+.-.+.-.++ +++. ..+ ..+|+. .+.+......+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~-~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSE-DDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCC-CCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 799999999999999999998 9999999975432211111 2211 000 111111 111111222222
Q ss_pred hcccccccccc--CCCCCccCCC------CCCCC-------CCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEe
Q 018550 71 VNLPRELMGFQ--AYPFVARNYE------GSVDL-------RRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 71 ~~~~~~~~~~~--~~~~~~~~~~------~~~~~-------~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~ 134 (354)
.+.+.....+. +.++...... +..+. .. .+...++..+.+.+.+ .+++ +..+..+.++..+
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG~~I~~~L~~~v~~~p~I~--v~e~~~a~~li~~ 163 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATGKEIMTALLKKVRNRPNIT--VLEGAEALDLIIE 163 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-CccHHHHHHHHHHHhcCCCcE--EEecchhhhhhhc
Confidence 22222111111 2222221100 00000 01 2447888888888776 5777 8888888888877
Q ss_pred CCCcE-EEEEeecCCceEEEEeCEEEEeeCC
Q 018550 135 ESNKW-KVKSRKKDDVVEEETFDAVVVCNGH 164 (354)
Q Consensus 135 ~~~~~-~v~~~~g~~~~~~~~~d~vIlAtG~ 164 (354)
++... .+.+.+..++...+.++.||+|||.
T Consensus 164 ~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 164 DGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred CCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 63233 4454433223468899999999995
No 335
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.97 E-value=3.9e-06 Score=76.32 Aligned_cols=81 Identities=25% Similarity=0.263 Sum_probs=51.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----------------------------------------------
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------------------------------------------- 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------------------------------------------- 231 (354)
+|+|||||++|+-+|..+++.|.+|.++++.+.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 489999999999999999999999999999874
Q ss_pred -------------------------------ccccccCCCCC-CeEEecceeEEecC-Cc---EEEccCcEEecCEEEEc
Q 018550 232 -------------------------------DETHEKQPGYD-NMWLHSMVERANED-GT---VVFRNGRVVSADVIMHC 275 (354)
Q Consensus 232 -------------------------------~~~~~~l~~~~-~~~~~~~v~~v~~~-~~---v~~~~g~~~~~D~vi~a 275 (354)
+.++.++++.+ +++.++.|..+..+ +. |.++++.++.+|.||+|
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILA 161 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILA 161 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE-
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEe
Confidence 00111111223 68899999999743 32 66657789999999999
Q ss_pred ccCC
Q 018550 276 TGLT 279 (354)
Q Consensus 276 ~G~~ 279 (354)
+|-.
T Consensus 162 tGG~ 165 (409)
T PF03486_consen 162 TGGK 165 (409)
T ss_dssp ---S
T ss_pred cCCC
Confidence 9976
No 336
>PLN02676 polyamine oxidase
Probab=97.95 E-value=1.1e-05 Score=75.60 Aligned_cols=42 Identities=24% Similarity=0.493 Sum_probs=37.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+++|+.|+++|. +|+|+|+++.+||.+..
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence 4689999999999999999999998 69999999998886543
No 337
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.95 E-value=1.2e-05 Score=75.29 Aligned_cols=40 Identities=43% Similarity=0.652 Sum_probs=36.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+|+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999876543
No 338
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.92 E-value=0.00011 Score=70.36 Aligned_cols=33 Identities=30% Similarity=0.222 Sum_probs=31.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 689999999999999999999999999999865
No 339
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.92 E-value=3e-05 Score=72.06 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
.+...+.+.+...+++.|.. +..++.|++|.-..++.+.|.+..| .+++.++|.|+|.|++
T Consensus 184 ~DP~~lC~ala~~A~~~GA~--viE~cpV~~i~~~~~~~~gVeT~~G-----~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGAL--VIENCPVTGLHVETDKFGGVETPHG-----SIETECVVNAAGVWAR 244 (856)
T ss_pred cCHHHHHHHHHHHHHhcCcE--EEecCCcceEEeecCCccceeccCc-----ceecceEEechhHHHH
Confidence 34477888889999999999 9999999999876657788888887 6899999999998774
No 340
>PLN02487 zeta-carotene desaturase
Probab=97.91 E-value=1.6e-05 Score=75.41 Aligned_cols=41 Identities=44% Similarity=0.631 Sum_probs=37.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+++|+|||+|++|+++|..|.+.|++|+|+|+.+.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 35899999999999999999999999999999999987553
No 341
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.91 E-value=1.1e-05 Score=80.89 Aligned_cols=79 Identities=19% Similarity=0.047 Sum_probs=56.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-------------------ccccccCCCCC-CeEEecceeEEec
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------------------DETHEKQPGYD-NMWLHSMVERANE 255 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-------------------~~~~~~l~~~~-~~~~~~~v~~v~~ 255 (354)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+. +...+.+++.+ +++.++.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 579999999999999999999999999999998763 11122233333 444444321
Q ss_pred CCcEEEccCcEEecCEEEEcccCC
Q 018550 256 DGTVVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 256 ~~~v~~~~g~~~~~D~vi~a~G~~ 279 (354)
..+++++.....+|.||+|||..
T Consensus 381 -~dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 381 -KTATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred -cEEeHHHhccccCCEEEEeCCCC
Confidence 12555555556799999999984
No 342
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.90 E-value=1.5e-05 Score=77.89 Aligned_cols=42 Identities=43% Similarity=0.562 Sum_probs=38.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|+.|.+.|++|+|+|+++.+||.+..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 468999999999999999999999999999999989877543
No 343
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.88 E-value=0.00022 Score=61.29 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~----g~~v~lie~~~~ 36 (354)
..+|+|||||-.|.+.|.-|.++ |++|+++|+++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 35899999999999999999764 789999999764
No 344
>PRK06847 hypothetical protein; Provisional
Probab=97.88 E-value=2.9e-05 Score=70.60 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------------------------------------c---c
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------------------------------------D---E 233 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------------------------------------~---~ 233 (354)
..+|+|||+|++|+-+|..|++.|.+|+++++++. + .
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 46799999999999999999999999999998652 0 0
Q ss_pred cccc-------------------------C----CCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCC
Q 018550 234 THEK-------------------------Q----PGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 234 ~~~~-------------------------l----~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
.... + .+.+ +++.++.+++++.++. +.+.+|+++.+|.||.|+|..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 0000 0 0112 5777788888874432 6667888999999999999873
No 345
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.87 E-value=2e-05 Score=70.36 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=55.4
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC-C----------------------------------------------
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV-A---------------------------------------------- 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~-~---------------------------------------------- 231 (354)
.|+|||||..|+|+|..+++.|.+|.++.... .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 48999999999999999999999999995333 1
Q ss_pred ------------------ccccccCCCCCCe-EEecceeEEe-cCCc---EEEccCcEEecCEEEEcccC
Q 018550 232 ------------------DETHEKQPGYDNM-WLHSMVERAN-EDGT---VVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 232 ------------------~~~~~~l~~~~~~-~~~~~v~~v~-~~~~---v~~~~g~~~~~D~vi~a~G~ 278 (354)
....+.++...++ +....|+++. ++++ |.+.+|.++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0011122233322 4567888886 3443 88899999999999999998
No 346
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.86 E-value=0.00022 Score=66.84 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=28.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
++|+|||+|..|+.+|..+.+.|. +|++++..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 689999999999999999999986 78877654
No 347
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.85 E-value=7e-05 Score=63.65 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=67.6
Q ss_pred CCeEEEEccCCCHHHHHHHHhcc-C-CEEEEEEecCC-----------------c---cccccCCCCCCeEEecceeEEe
Q 018550 197 DQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVA-----------------D---ETHEKQPGYDNMWLHSMVERAN 254 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~-g-~~v~~~~r~~~-----------------~---~~~~~l~~~~~~~~~~~v~~v~ 254 (354)
.-.++|||||.-|+-+|..+.+. + .+|-++..++. + ..+..+.-.+..+.+..|+++.
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~ 118 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFN 118 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcC
Confidence 35699999999999999998765 3 35777776653 1 1122223344567778888888
Q ss_pred cCCc-EEEccCcEEecCEEEEcccCCCccCcccccCchhh
Q 018550 255 EDGT-VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMAL 293 (354)
Q Consensus 255 ~~~~-v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~ 293 (354)
.+.. |++++|++|.+|++|+|+|.. -+-+.+++..+
T Consensus 119 P~~N~v~t~gg~eIsYdylviA~Giq---l~y~~IkGl~E 155 (446)
T KOG3851|consen 119 PDKNTVVTRGGEEISYDYLVIAMGIQ---LDYGKIKGLVE 155 (446)
T ss_pred CCcCeEEccCCcEEeeeeEeeeeece---eccchhcChHh
Confidence 6654 999999999999999999998 44344544443
No 348
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.79 E-value=0.0002 Score=60.09 Aligned_cols=37 Identities=19% Similarity=0.436 Sum_probs=32.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC------CcEEEEeeCCCcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQVG 38 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g------~~v~lie~~~~~g 38 (354)
+++|+|+|||+.|++.|+.|++++ ..+++||+..-.|
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 478999999999999999999997 7899999865444
No 349
>PLN02612 phytoene desaturase
Probab=97.78 E-value=3.3e-05 Score=73.87 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=37.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
.++|+|||+|++|+++|..|+++|++++++|+++.+||...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 46899999999999999999999999999999888887643
No 350
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.77 E-value=2.8e-05 Score=71.54 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
.+||+|||+|.+|+.+|..|++.|.+|.++|+++..||.+.
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 47999999999999999999999999999999999998876
No 351
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.75 E-value=4.3e-05 Score=69.41 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=35.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~ 40 (354)
.+||+|||||..|..+|..++.+|.++.|+|+++...|+
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 379999999999999999999999999999998765444
No 352
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.75 E-value=0.00012 Score=68.82 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999753
No 353
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.74 E-value=0.0013 Score=65.36 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCc-EEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~-v~lie~~~ 35 (354)
++|+|||||..|+-+|..+.+.|.+ |+++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 6899999999999999999999997 99999853
No 354
>PLN02463 lycopene beta cyclase
Probab=97.72 E-value=8.7e-05 Score=68.58 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=59.1
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---cc-----------------------------------------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---DE----------------------------------------- 233 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---~~----------------------------------------- 233 (354)
-.|+|||+|++|+-+|..|++.|.+|.++.+.+. +.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 4699999999999999999999999999988652 00
Q ss_pred -----------ccccCCCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCC
Q 018550 234 -----------THEKQPGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 234 -----------~~~~l~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
+.+++.+.+.-+....|++++.++. |++++|.++.+|+||.|+|...
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 0000011221123467777764332 7778888999999999999983
No 355
>PRK06753 hypothetical protein; Provisional
Probab=97.69 E-value=0.00013 Score=66.40 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=61.0
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC------------------------c----------------c---cc
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------------------------D----------------E---TH 235 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~------------------------~----------------~---~~ 235 (354)
+|+|||||++|+-+|..|++.|.+|+++++.+. + . ..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 699999999999999999999999999998763 0 0 00
Q ss_pred ccC-----------------------CCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCC
Q 018550 236 EKQ-----------------------PGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 236 ~~l-----------------------~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
..+ .....++.++.+++++.++. |++++|+++.+|+||-|-|..
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~ 151 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIH 151 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcc
Confidence 000 01124777888888874432 667788889999999999966
No 356
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.69 E-value=5.5e-05 Score=71.37 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=28.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.|+|+|||+|++|+-.+..|.+.|-+++++++++.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 37899999999999999999999999999999885
No 357
>PLN03000 amine oxidase
Probab=97.69 E-value=5.5e-05 Score=74.15 Aligned_cols=42 Identities=33% Similarity=0.527 Sum_probs=38.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+.+|..|.+.|++|+|+|+++.+||.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 368999999999999999999999999999999999987654
No 358
>PRK07236 hypothetical protein; Provisional
Probab=97.68 E-value=0.00013 Score=66.68 Aligned_cols=83 Identities=22% Similarity=0.256 Sum_probs=62.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--c-------------cccccC------------------C----
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--D-------------ETHEKQ------------------P---- 239 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--~-------------~~~~~l------------------~---- 239 (354)
..+|+|||||++|+.+|..|++.|.+|+++++.+. . +.++++ .
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 47899999999999999999999999999998762 0 000000 0
Q ss_pred -------------------------CCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCC
Q 018550 240 -------------------------GYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 240 -------------------------~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
....++.++.++.++.++. +++++|+++.+|+||.|-|..
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR 153 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 0013677778888874432 667888999999999999976
No 359
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.68 E-value=4.7e-05 Score=75.93 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-------------------cccccCCCCC-CeEEecceeEEe
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------------------ETHEKQPGYD-NMWLHSMVERAN 254 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-------------------~~~~~l~~~~-~~~~~~~v~~v~ 254 (354)
..+++|+|||+|++|+.+|..|++.|.+|+++.+.+.. ...+.+.+.+ +++.++.+ .
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-d-- 613 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-D-- 613 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-E--
Confidence 35789999999999999999999999999999986530 0001111222 44444333 1
Q ss_pred cCCcEEEccCcEEecCEEEEcccCC
Q 018550 255 EDGTVVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 255 ~~~~v~~~~g~~~~~D~vi~a~G~~ 279 (354)
+.+++.....+|.||+|||..
T Consensus 614 ----i~le~L~~~gYDaVILATGA~ 634 (1019)
T PRK09853 614 ----LTVEQLKNEGYDYVVVAIGAD 634 (1019)
T ss_pred ----EEhhhheeccCCEEEECcCCC
Confidence 233333455699999999997
No 360
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.67 E-value=6.3e-05 Score=66.48 Aligned_cols=42 Identities=36% Similarity=0.476 Sum_probs=37.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~ 43 (354)
.++|+|+|||.+|+++|+.|++++. .++|+|+.+.+||..+-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 5789999999999999999999976 56779999999987665
No 361
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.67 E-value=0.00052 Score=70.05 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=67.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++|+|||+|+.|+.+|..|++.|. .|+|+|..+.+
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------------------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------------------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------------
Confidence 689999999999999999999996 58899875321
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
...+.+.+++.+++ ++.++.+.++..++ ..-.++.....+...++.+|.|+++
T Consensus 354 ------------------------~~~l~~~L~~~GV~--i~~~~~v~~i~g~~-~v~~V~l~~~~g~~~~i~~D~V~va 406 (985)
T TIGR01372 354 ------------------------SPEARAEARELGIE--VLTGHVVAATEGGK-RVSGVAVARNGGAGQRLEADALAVS 406 (985)
T ss_pred ------------------------hHHHHHHHHHcCCE--EEcCCeEEEEecCC-cEEEEEEEecCCceEEEECCEEEEc
Confidence 11234455677888 89999999987543 2223444321122357999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
.| ..|+.
T Consensus 407 ~G--~~Pnt 413 (985)
T TIGR01372 407 GG--WTPVV 413 (985)
T ss_pred CC--cCchh
Confidence 99 56654
No 362
>PRK05868 hypothetical protein; Validated
Probab=97.66 E-value=0.00015 Score=65.84 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999876
No 363
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.66 E-value=0.00095 Score=60.92 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=36.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC----CcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g----~~v~lie~~~~~gg~~~~~ 44 (354)
.++.=|||+|.|++++|..|-+.+ -+|+++|+.+..||.+.-.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~ 48 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGA 48 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCC
Confidence 456779999999999999998864 5999999998888776543
No 364
>PRK07588 hypothetical protein; Provisional
Probab=97.66 E-value=0.00013 Score=66.80 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=60.7
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------------------------------------c---cc-
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------------------------------------D---ET- 234 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------------------------------------~---~~- 234 (354)
+|+|||||++|+-+|..|++.|.+|+++++.+. + ..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 699999999999999999999999999997653 0 00
Q ss_pred -----------c-----------------ccCCCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCC
Q 018550 235 -----------H-----------------EKQPGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 235 -----------~-----------------~~l~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
. +.+....+++.++.+++++.++. |++++|+++.+|+||-|-|...
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 0 00011125667777888774432 6667888899999999999873
No 365
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.65 E-value=0.00087 Score=62.71 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|+.+|..+.+.|. +|+++++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 689999999999999999999996 799999864
No 366
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.64 E-value=0.0023 Score=62.47 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.++|+|||+|..|+.+|..|.+.|. +|+++.+.+
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3689999999999999999999997 699998753
No 367
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.63 E-value=0.00028 Score=60.87 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=77.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|+|||+.++..|--++..|.++.|+=|.+.+ .+
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv----LR-------------------------------------- 226 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV----LR-------------------------------------- 226 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh----hc--------------------------------------
Confidence 589999999999999999999999999999886543 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.|+ +.+.+.+.+..+..|++ ++.++.++.+.+..++...+.+..+. ....|.|+-|
T Consensus 227 ~FD------------------~~i~~~v~~~~~~~gin--vh~~s~~~~v~K~~~g~~~~i~~~~~----i~~vd~llwA 282 (478)
T KOG0405|consen 227 GFD------------------EMISDLVTEHLEGRGIN--VHKNSSVTKVIKTDDGLELVITSHGT----IEDVDTLLWA 282 (478)
T ss_pred chh------------------HHHHHHHHHHhhhccee--ecccccceeeeecCCCceEEEEeccc----cccccEEEEE
Confidence 010 55666677777777888 89999999999877565666665553 4469999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|..
T Consensus 283 iG--R~Pnt 289 (478)
T KOG0405|consen 283 IG--RKPNT 289 (478)
T ss_pred ec--CCCCc
Confidence 99 45544
No 368
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.63 E-value=0.00031 Score=59.73 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC--cEEEEEeecCCceEEEEeCEEEEeeCCC
Q 018550 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN--KWKVKSRKKDDVVEEETFDAVVVCNGHF 165 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~--~~~v~~~~g~~~~~~~~~d~vIlAtG~~ 165 (354)
.++..+...+-+-.+..+-+ +..+-+++.+..+++. .+-+.+.++.+ ++.+.+++|-|+|.+
T Consensus 193 vD~~~v~ls~~edF~~~gg~--i~~n~~l~g~~~n~~~~~~Ypivv~ngk~--ee~r~~~~vtc~gl~ 256 (453)
T KOG2665|consen 193 VDWGSVTLSFGEDFDFMGGR--IYTNFRLQGIAQNKEATFSYPIVVLNGKG--EEKRTKNVVTCAGLQ 256 (453)
T ss_pred eehHHHHHHHHHHHHHhccc--ccccceeccchhccCCCCCCceEEecCcc--ceeEEeEEEEecccc
Confidence 34455555555556666777 7888999999887642 45566666553 488999999999973
No 369
>PLN02976 amine oxidase
Probab=97.63 E-value=7.4e-05 Score=76.15 Aligned_cols=43 Identities=35% Similarity=0.604 Sum_probs=39.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
.++|+|||||++|+++|..|.+.|++|+|+|+++.+||.+...
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 4789999999999999999999999999999999999887653
No 370
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.63 E-value=0.00015 Score=66.39 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=31.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+.+|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4679999999999999999999999999999876
No 371
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00021 Score=66.15 Aligned_cols=91 Identities=22% Similarity=0.221 Sum_probs=61.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCE-EEEEEecCC---------------------------cc---------------c
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKE-VHIASRSVA---------------------------DE---------------T 234 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~-v~~~~r~~~---------------------------~~---------------~ 234 (354)
..|+|||+|.+|+-+|..|.+.|.. +.++++.+. .. .
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 5699999999999999999999987 999998763 00 0
Q ss_pred cccCCCCC---CeEEecceeEEe--cCCc---EEEccCcE--EecCEEEEcccCCCccCcccccC
Q 018550 235 HEKQPGYD---NMWLHSMVERAN--EDGT---VVFRNGRV--VSADVIMHCTGLTGTSTTTLFLK 289 (354)
Q Consensus 235 ~~~l~~~~---~~~~~~~v~~v~--~~~~---v~~~~g~~--~~~D~vi~a~G~~~~~p~~~~l~ 289 (354)
...+++.+ .+.+++.|+.+. +++. |+++++.+ +.+|.||+|||.- ..|+..-+.
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~-~~P~iP~~~ 152 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHL-SEPYIPDFA 152 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCC-CCCCCCCCC
Confidence 00011122 455666666665 3332 77777754 5599999999994 445554443
No 372
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.58 E-value=6.1e-05 Score=66.10 Aligned_cols=35 Identities=34% Similarity=0.572 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQV 37 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~ 37 (354)
+|++|||+|++|+.+|..|++.+ .+|+|+|+++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 68999999999999999999997 699999997543
No 373
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.58 E-value=0.00029 Score=62.12 Aligned_cols=59 Identities=29% Similarity=0.273 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCccc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
+-+.++..+.+.+-|+. ++-|..|.++.... +...+.+.+|. ++..|.||.|+| -.|+.
T Consensus 393 eyls~wt~ekir~~GV~--V~pna~v~sv~~~~-~nl~lkL~dG~----~l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVD--VRPNAKVESVRKCC-KNLVLKLSDGS----ELRTDLVVVAVG--EEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcCce--eccchhhhhhhhhc-cceEEEecCCC----eeeeeeEEEEec--CCCch
Confidence 45667777777888998 99999999998876 77888899986 899999999999 56654
No 374
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.56 E-value=0.0001 Score=67.03 Aligned_cols=32 Identities=22% Similarity=0.120 Sum_probs=29.8
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|+|||||.+|+++|..|++.|.+|+++.+++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 58999999999999999999999999998654
No 375
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.56 E-value=0.00024 Score=64.30 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=59.9
Q ss_pred EEEEccCCCHHHHHHHHhcc--CCEEEEEEecCC----------ccc--------cccC---------------------
Q 018550 200 VILIGHYASGLDIKRDLAGF--AKEVHIASRSVA----------DET--------HEKQ--------------------- 238 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~~----------~~~--------~~~l--------------------- 238 (354)
|+|||+|+.|+.+|..|++. |.+|.++.+.+. +.. ...+
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~ 81 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKT 81 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCC
Confidence 79999999999999999986 899999998762 000 0000
Q ss_pred ---------------CCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCC
Q 018550 239 ---------------PGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 239 ---------------~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
.+.+ .++.+..|.++..++ |++++|+++.+|.||.|.|..+
T Consensus 82 ~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~-v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 82 AYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADG-VDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCE-EEECCCCEEEeeEEEECCCCCC
Confidence 0001 266677888886555 8888899999999999999773
No 376
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.55 E-value=0.00025 Score=64.34 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=62.1
Q ss_pred EEEEccCCCHHHHHHHH--hccCCEEEEEEecCC----------------------------------------------
Q 018550 200 VILIGHYASGLDIKRDL--AGFAKEVHIASRSVA---------------------------------------------- 231 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l--~~~g~~v~~~~r~~~---------------------------------------------- 231 (354)
|+|||+|++|.-+|..| ++.|.+|.++.+.+.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 79999999999999999 778999999987542
Q ss_pred ---------ccccccCCCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCC
Q 018550 232 ---------DETHEKQPGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 232 ---------~~~~~~l~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
+...+++...+..+.++.|..+..++. |++++|+++.++.||-|.|..
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 011112232346778889999986553 677889999999999999976
No 377
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.54 E-value=0.002 Score=63.04 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|+-+|..+.++|. +|+++.+++
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 689999999999999999999997 699998754
No 378
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.54 E-value=0.00011 Score=69.17 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=34.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~ 40 (354)
+||+|||+||+|+.+|..|++.|++|.+||++...|+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence 58999999999999999999999999999998777643
No 379
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.54 E-value=0.00019 Score=65.72 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=30.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 469999999999999999999999999999854
No 380
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.51 E-value=0.00047 Score=63.29 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=64.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----------c----cccccC-----------------------
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----------D----ETHEKQ----------------------- 238 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-----------~----~~~~~l----------------------- 238 (354)
.++++|||+|++|+-.|..|.+.|.++++++|++. + ..++.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 58899999999999999999999999999999884 0 001111
Q ss_pred ---------------CC---CCCeEEecceeEEecC--Cc--EEEccC----cEEecCEEEEcccCC--CccCcccc
Q 018550 239 ---------------PG---YDNMWLHSMVERANED--GT--VVFRNG----RVVSADVIMHCTGLT--GTSTTTLF 287 (354)
Q Consensus 239 ---------------~~---~~~~~~~~~v~~v~~~--~~--v~~~~g----~~~~~D~vi~a~G~~--~~~p~~~~ 287 (354)
+. ...+.+++.+..+... +. |.+.++ .+.-+|.|++|||-- |..|..+.
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 01 1136778877777743 33 666554 245599999999987 44454443
No 381
>PRK06834 hypothetical protein; Provisional
Probab=97.49 E-value=0.00023 Score=66.87 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=61.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-------------------------ccc------------------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------------------------DET------------------ 234 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-------------------------~~~------------------ 234 (354)
..|+|||+|++|+-+|..|++.|.+|+++.+.+. ++.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 4699999999999999999999999999998652 000
Q ss_pred c-----------------------ccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCC
Q 018550 235 H-----------------------EKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 235 ~-----------------------~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
. +.+.+.+ +++.++.++.++.++. +++.+|.++.+|+||.|.|...
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 0 0001112 5677888888875432 5556777899999999999983
No 382
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.44 E-value=0.0001 Score=74.91 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=32.5
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 46789999999999999999999999999999865
No 383
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.44 E-value=0.00012 Score=68.13 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=32.8
Q ss_pred CCCeEEEEccCCCHHHHHHHHhc--cCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAG--FAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~--~g~~v~~~~r~~~ 231 (354)
.+++|+|||+|+.|+.+|..|++ .|.+|+++.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 46889999999999999999986 6899999999885
No 384
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.43 E-value=0.00013 Score=68.59 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=53.1
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc---cccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCE
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---ETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADV 271 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~---~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~ 271 (354)
.+++++|||+|.+|+++|..|++.|.+|+++.+++.+ ...+.+++.+ .++.+..+. ....+|+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-------------~~~~~D~ 81 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-------------LPEDTDL 81 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-------------ccCCCCE
Confidence 4688999999999999999999999999999876531 1112233333 333332221 1245999
Q ss_pred EEEcccCCCccCccccc
Q 018550 272 IMHCTGLTGTSTTTLFL 288 (354)
Q Consensus 272 vi~a~G~~~~~p~~~~l 288 (354)
||.++|.. |+.+++
T Consensus 82 Vv~s~Gi~---~~~~~~ 95 (480)
T PRK01438 82 VVTSPGWR---PDAPLL 95 (480)
T ss_pred EEECCCcC---CCCHHH
Confidence 99999999 555543
No 385
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0026 Score=55.61 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=70.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||-+++..|..|.+.+.+|+++=|++.+-.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------ 180 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------ 180 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------------------------------------------
Confidence 46899999999999999999999999999988754310
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.+.+.+.+.+. ++. +.+++.+.++.-++ .-.+..++..+++..+.+|.+.+
T Consensus 181 ------------------------~~~~~~~l~~~~~i~--~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~ 232 (305)
T COG0492 181 ------------------------EEILVERLKKNVKIE--VLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFI 232 (305)
T ss_pred ------------------------CHHHHHHHHhcCCeE--EEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEE
Confidence 13334444433 566 88999999987542 23455554334456899999999
Q ss_pred eeCCCCCccc
Q 018550 161 CNGHFSVPRL 170 (354)
Q Consensus 161 AtG~~s~~~~ 170 (354)
+.| ..|..
T Consensus 233 ~iG--~~p~~ 240 (305)
T COG0492 233 AIG--HLPNT 240 (305)
T ss_pred ecC--CCCch
Confidence 999 55554
No 386
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.42 E-value=0.00048 Score=54.12 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=25.4
Q ss_pred EEEccCCCHHHHHHHHhcc-----CCEEEEEEecC
Q 018550 201 ILIGHYASGLDIKRDLAGF-----AKEVHIASRSV 230 (354)
Q Consensus 201 ~ViG~G~~g~e~a~~l~~~-----g~~v~~~~r~~ 230 (354)
+|||+|++|+-++..|.+. ..+|++|.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5999999999999999776 35699998855
No 387
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.41 E-value=0.00036 Score=63.74 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=63.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC-C-------------------------------------------c-
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV-A-------------------------------------------D- 232 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~-~-------------------------------------------~- 232 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+ . .
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR 82 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence 569999999999999999999999999999983 1 0
Q ss_pred --------------------------cccccCCCCC--CeEEecceeEEecCCc---EEEc-cCcEEecCEEEEcccCC
Q 018550 233 --------------------------ETHEKQPGYD--NMWLHSMVERANEDGT---VVFR-NGRVVSADVIMHCTGLT 279 (354)
Q Consensus 233 --------------------------~~~~~l~~~~--~~~~~~~v~~v~~~~~---v~~~-~g~~~~~D~vi~a~G~~ 279 (354)
.+.+++.+.+ +++.++.|+.++.++. ++++ +|+++.||+||-|=|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence 0011111222 6778889999885542 6777 89999999999999976
No 388
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.41 E-value=0.0037 Score=55.40 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=38.9
Q ss_pred eEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCcccCC
Q 018550 121 VVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPRLAQ 172 (354)
Q Consensus 121 ~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~~~p~ 172 (354)
.+..+++|+.++..+++.+.+++.+. +++.++++.|.||+||| -....|.
T Consensus 294 ~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATG--Y~~~~P~ 344 (436)
T COG3486 294 RLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATG--YRRAVPS 344 (436)
T ss_pred eeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecc--cccCCch
Confidence 36778999999987755588888765 45568899999999999 5555553
No 389
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.39 E-value=0.00033 Score=61.23 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=29.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999875
No 390
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.37 E-value=0.00037 Score=64.08 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=29.0
Q ss_pred eEEEEccCCCHHHHHHHHhccC--CEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFA--KEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g--~~v~~~~r~~ 230 (354)
.|+|||+|++|+-+|..|++.| .+|+++++.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 4899999999999999999985 8999999864
No 391
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00058 Score=61.36 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=29.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||||..|+|.|.+.++.|++.++++.+-
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 359999999999999999999999988887654
No 392
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.36 E-value=0.00041 Score=65.72 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=30.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
-.|+|||||+.|+++|..+++.|.+|.++++.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 35999999999999999999999999999987
No 393
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.36 E-value=0.0013 Score=58.12 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=29.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~----g~~v~lie~~ 34 (354)
.++|+|+||||.|.++|..|... .+++.|+|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 47999999999999999999865 4699999987
No 394
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.35 E-value=0.00056 Score=63.67 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 3789999999999999999999999999998853
No 395
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.35 E-value=0.00053 Score=65.01 Aligned_cols=100 Identities=22% Similarity=0.194 Sum_probs=75.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++=+|||+|.-|+.+|..|...|.++++++-.+.+ ..++
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l--MerQ--------------------------------------- 184 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL--MERQ--------------------------------------- 184 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH--HHHh---------------------------------------
Confidence 34589999999999999999999999999764321 0000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+. ..-...|+...++.|++ ++++...+.+...+ ....+..++|+ .+.+|.||.|+
T Consensus 185 LD------------------~~ag~lL~~~le~~Gi~--~~l~~~t~ei~g~~-~~~~vr~~DG~----~i~ad~VV~a~ 239 (793)
T COG1251 185 LD------------------RTAGRLLRRKLEDLGIK--VLLEKNTEEIVGED-KVEGVRFADGT----EIPADLVVMAV 239 (793)
T ss_pred hh------------------hHHHHHHHHHHHhhcce--eecccchhhhhcCc-ceeeEeecCCC----cccceeEEEec
Confidence 00 33346677777888998 88888777777644 56678888887 89999999999
Q ss_pred CCCCCccc
Q 018550 163 GHFSVPRL 170 (354)
Q Consensus 163 G~~s~~~~ 170 (354)
| -+|+.
T Consensus 240 G--IrPn~ 245 (793)
T COG1251 240 G--IRPND 245 (793)
T ss_pred c--ccccc
Confidence 9 66664
No 396
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.34 E-value=0.00059 Score=62.38 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 469999999999999999999999999999864
No 397
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.33 E-value=0.00047 Score=63.40 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 359999999999999999999999999999864
No 398
>PRK07045 putative monooxygenase; Reviewed
Probab=97.32 E-value=0.00064 Score=62.16 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-+|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 469999999999999999999999999999866
No 399
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.32 E-value=0.00019 Score=64.54 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=30.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 48999999999999999999999999999984
No 400
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.32 E-value=0.00061 Score=62.88 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=30.1
Q ss_pred eEEEEccCCCHHHHHHHHhccC-CEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~~ 231 (354)
+|+|||+|+.|+-+|..|++.| .+|+++++++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 6999999999999999999998 49999999763
No 401
>PRK09126 hypothetical protein; Provisional
Probab=97.31 E-value=0.00052 Score=62.83 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 459999999999999999999999999999853
No 402
>PRK06184 hypothetical protein; Provisional
Probab=97.29 E-value=0.00057 Score=64.75 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999875
No 403
>PRK13984 putative oxidoreductase; Provisional
Probab=97.26 E-value=0.013 Score=56.87 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=25.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC------cEEEEe
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH------TVVVYE 32 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~------~v~lie 32 (354)
++|+|||||..|+.+|..|.+.+. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 689999999999999999998753 566653
No 404
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.26 E-value=0.0055 Score=59.74 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|+-+|..+.+.|. +|+++.+++
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999995 799998753
No 405
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.24 E-value=0.00084 Score=61.37 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=29.1
Q ss_pred EEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 2 viIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 8999999999999999999999999999765
No 406
>PRK02106 choline dehydrogenase; Validated
Probab=97.23 E-value=0.00037 Score=66.85 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCC
Q 018550 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177 (354)
Q Consensus 108 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~ 177 (354)
|+....++-+++ +..++.|++|..++.....|...+..+....+.++.||+|.|+...|+++...|+.
T Consensus 206 ~l~~a~~~~nl~--i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG 273 (560)
T PRK02106 206 YLDPALKRPNLT--IVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIG 273 (560)
T ss_pred hhccccCCCCcE--EEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence 333333334566 88999999998875222334444433333456899999999998889887766654
No 407
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.22 E-value=0.0004 Score=68.81 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=33.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468999999999999999999999999999999753
No 408
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.21 E-value=0.00078 Score=62.18 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=31.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 3569999999999999999999999999999865
No 409
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.21 E-value=0.0061 Score=61.55 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=29.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~-~v~lie~~~ 35 (354)
.++|+|||||..|+-+|..+.+. |. +|+++.++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 36899999999999999999886 75 799999853
No 410
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.19 E-value=0.00077 Score=61.47 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=29.2
Q ss_pred EEEEccCCCHHHHHHHHhccC-CEEEEEEecC
Q 018550 200 VILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 230 (354)
|+|||+|++|+-+|..|++.| .+|+++++.+
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 899999999999999999999 9999999864
No 411
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.19 E-value=0.00075 Score=61.59 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=30.2
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||||+.|.-+|..|++.|.+|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 369999999999999999999999999999753
No 412
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.19 E-value=0.00094 Score=61.11 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 469999999999999999999999999999764
No 413
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.19 E-value=0.00066 Score=62.83 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=30.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|++|.-+|..|++.|.+|.++.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 459999999999999999999999999999864
No 414
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.18 E-value=0.00078 Score=61.43 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=29.5
Q ss_pred EEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 8999999999999999999999999999874
No 415
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.18 E-value=0.00038 Score=55.71 Aligned_cols=38 Identities=29% Similarity=0.512 Sum_probs=32.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccce
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGS 40 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~ 40 (354)
.||+|+|+|.+|+++|+.++++ +.+|.+||..-.+||.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG 116 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG 116 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence 4899999999999999999865 5799999997666644
No 416
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.17 E-value=0.037 Score=52.17 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~ 36 (354)
++|+|||+|..|+.+|..+.+.+. +|+++|..+.
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 689999999999999999888885 7999998653
No 417
>PLN02697 lycopene epsilon cyclase
Probab=97.15 E-value=0.00092 Score=63.04 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=57.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--------cccc----------------------------------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--------DETH---------------------------------- 235 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--------~~~~---------------------------------- 235 (354)
-.|+|||+|++|+-+|..|++.|.+|.++.+..+ ....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 4699999999999999999999999999976432 0000
Q ss_pred -----------ccCCCCCCeEEecceeEEecC-Cc---EEEccCcEEecCEEEEcccCCC
Q 018550 236 -----------EKQPGYDNMWLHSMVERANED-GT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 236 -----------~~l~~~~~~~~~~~v~~v~~~-~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
+++.+.+..+.+..|+.+..+ +. ++..+|.++.+|.||.|+|...
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000112322355677777633 22 3456788899999999999973
No 418
>PRK07190 hypothetical protein; Provisional
Probab=97.14 E-value=0.00086 Score=63.04 Aligned_cols=33 Identities=21% Similarity=0.062 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 469999999999999999999999999999876
No 419
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.14 E-value=0.00042 Score=62.25 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=29.1
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.|+|||+|+.|+-+|..|++.|.+|+++.+++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 589999999999999999999999999999773
No 420
>PRK08244 hypothetical protein; Provisional
Probab=97.10 E-value=0.00089 Score=63.29 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 359999999999999999999999999999876
No 421
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.09 E-value=0.0013 Score=60.12 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 359999999999999999999999999999764
No 422
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.07 E-value=0.0012 Score=60.66 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=30.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999999999985
No 423
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.00073 Score=61.98 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||||..|+|.|.+.++.|.++.+++-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 359999999999999999999999988887654
No 424
>PRK09897 hypothetical protein; Provisional
Probab=97.06 E-value=0.0012 Score=62.21 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=28.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCC--EEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~--~v~~~~r~~ 230 (354)
++|+|||+|++|+-+|..|.+.+. +|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 479999999999999999987654 799999855
No 425
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.06 E-value=0.00077 Score=62.14 Aligned_cols=36 Identities=22% Similarity=0.076 Sum_probs=32.1
Q ss_pred CCCeEEEEccCCCHHHHHHHHh-ccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLA-GFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~-~~g~~v~~~~r~~~ 231 (354)
.+++|+|||+|++|+.+|..|. +.|.+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5789999999999999999764 67999999999885
No 426
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0014 Score=55.41 Aligned_cols=34 Identities=32% Similarity=0.341 Sum_probs=28.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC-------CcEEEEeeC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKG 34 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g-------~~v~lie~~ 34 (354)
++.+|+|||+|..|++.|..+.+.. .+|++++..
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 3579999999999999998888853 588998864
No 427
>PRK08013 oxidoreductase; Provisional
Probab=97.02 E-value=0.0016 Score=59.82 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 469999999999999999999999999999754
No 428
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.02 E-value=0.0016 Score=59.82 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 679999999999999999999999999999876
No 429
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.01 E-value=0.00089 Score=60.74 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+||+|||+|++|+++|..|++.|.+|.++|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
No 430
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.01 E-value=0.03 Score=53.88 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=28.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~ 34 (354)
.++|+|||+|..|+.++..+.+.+ .+++++.+.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 468999999999999999999988 578888875
No 431
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.00073 Score=57.93 Aligned_cols=35 Identities=34% Similarity=0.566 Sum_probs=32.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|...|-|||||.||..+|++++++|++|.|+|-++
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 34679999999999999999999999999999864
No 432
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.97 E-value=0.0018 Score=58.95 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=29.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.|+|||+|++|+-+|..|++.|.+|+++++.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 5899999999999999999999999999975
No 433
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.95 E-value=0.0016 Score=55.47 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=31.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.-.|+|||+|++|+-+|..|++.|.+|.++.+..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4569999999999999999999999999999875
No 434
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.0028 Score=51.42 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=33.9
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
++....|+|||+|++|+-+|..|++.|.+|.+++|+-.
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls 64 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS 64 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence 34557799999999999999999999999999999763
No 435
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.93 E-value=0.00086 Score=63.77 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC--ceEEEEeCEEEEeeCCCCCcccCCCCCCC
Q 018550 107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD--VVEEETFDAVVVCNGHFSVPRLAQVPGID 177 (354)
Q Consensus 107 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~--~~~~~~~d~vIlAtG~~s~~~~p~~~g~~ 177 (354)
.++....+.-+++ +..++.|..|..+......+......+ .+..+..+.||+|.|....|.+....|..
T Consensus 207 a~l~~a~~~~nl~--v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig 277 (542)
T COG2303 207 AYLKPALKRPNLT--LLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG 277 (542)
T ss_pred hcchhHhcCCceE--EecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence 3444444444566 889999999999874344444443222 34567889999999988888777665543
No 436
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.93 E-value=0.0018 Score=60.42 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|+|+|..|+++|..|++.|++|+++|+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999999999999999999999999999985
No 437
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.93 E-value=0.0019 Score=59.18 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.|+|||+|++|.-+|..|++.|.+|.++.+.+.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 599999999999999999999999999999774
No 438
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.91 E-value=0.0021 Score=58.82 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=29.6
Q ss_pred CeEEEEccCCCHHHHHHHHhcc---CCEEEEEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGF---AKEVHIASRS 229 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~---g~~v~~~~r~ 229 (354)
-.|+|||+|++|+-+|..|++. |.+|+++++.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4599999999999999999998 9999999994
No 439
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.88 E-value=0.0013 Score=60.23 Aligned_cols=30 Identities=27% Similarity=0.220 Sum_probs=27.2
Q ss_pred EEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 201 ILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 201 ~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|||+|++|+-+|..+++.|.+|+++++.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 589999999999999999999999999765
No 440
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.004 Score=53.74 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=73.9
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+-+|||||+.++.||-.|+..|++|++.-|.--+ . +|
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L-----r--------------------------------------GF 236 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL-----R--------------------------------------GF 236 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeec-----c--------------------------------------cc
Confidence 5689999999999999999999999998874211 0 11
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEEee
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCN 162 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIlAt 162 (354)
+ .++.+.+.+.+...|+. +.-.+...++++.+++...|..++.. +++-+-.||.|+.|.
T Consensus 237 D------------------qdmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~Ai 296 (503)
T KOG4716|consen 237 D------------------QDMAELVAEHMEERGIK--FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAI 296 (503)
T ss_pred c------------------HHHHHHHHHHHHHhCCc--eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhh
Confidence 1 78888889999999998 66666777888766566666655432 223466899999999
Q ss_pred CC
Q 018550 163 GH 164 (354)
Q Consensus 163 G~ 164 (354)
|.
T Consensus 297 GR 298 (503)
T KOG4716|consen 297 GR 298 (503)
T ss_pred cc
Confidence 93
No 441
>PRK10015 oxidoreductase; Provisional
Probab=96.86 E-value=0.0019 Score=59.81 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 359999999999999999999999999999865
No 442
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.86 E-value=0.00078 Score=62.32 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=26.7
Q ss_pred EEEEccCCCHHHHHHHHhccCCEEEEEEecCC-------------------------------cccc-------------
Q 018550 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------------------------------DETH------------- 235 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-------------------------------~~~~------------- 235 (354)
|+|||||+.|+-+|...++.|.+|.|+++.+. +...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 89999999999999999999999999999873 0000
Q ss_pred ---------------cc-CCCCC-CeEEecceeEEecCC-c---EEEcc--C-cEEecCEEEEcccCC
Q 018550 236 ---------------EK-QPGYD-NMWLHSMVERANEDG-T---VVFRN--G-RVVSADVIMHCTGLT 279 (354)
Q Consensus 236 ---------------~~-l~~~~-~~~~~~~v~~v~~~~-~---v~~~~--g-~~~~~D~vi~a~G~~ 279 (354)
.+ +.+.+ +++.++.+.++..++ + |++.+ | .++.++.+|-|||.-
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDG 149 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 11223 678888888887554 2 55554 3 678999999999953
No 443
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.86 E-value=0.0015 Score=60.71 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=26.7
Q ss_pred eEEEEccCCCHHHHHHHHhccC---CEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFA---KEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g---~~v~~~~r~~ 230 (354)
+|+|||||+.|.-+|..|++.+ .+|+++++..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 5899999999999999999987 7899999986
No 444
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.84 E-value=0.001 Score=63.40 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCC
Q 018550 105 VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177 (354)
Q Consensus 105 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~ 177 (354)
...|+.....+.+++ +..++.|.+|..+++....|...++.+......++.||+|.|+...|+++...|+.
T Consensus 196 ~~~~l~~a~~r~nl~--i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 196 ARAYLHPAMKRPNLE--VQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred HHHHhhhhccCCCeE--EEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 344555444445676 99999999999865222334444432222345899999999998888877666543
No 445
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.84 E-value=0.0028 Score=60.11 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=28.8
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.|+|||+|++|+++|..+++.|.+|.++.+.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 4899999999999999999999999999875
No 446
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0014 Score=64.73 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 192 PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 192 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+....+++|+|||+|+.|+-+|..|.+.|..|++..|+++
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 3445789999999999999999999999999999999986
No 447
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.83 E-value=0.0021 Score=55.01 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=31.5
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
....|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 34569999999999999999999999999999865
No 448
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.83 E-value=0.00095 Score=54.85 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=47.8
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeEEecceeEEecCCcEEEccCcEEecCEEEEc
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHC 275 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~l~~~~~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a 275 (354)
.+++|+|||||.+|..-+..|.+.|++|+++.....++ +..+.+.++ ++.+..+- ..+..-.+|+||.|
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~-l~~l~~~~~------i~~~~~~~----~~~dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESE-LTLLAEQGG------ITWLARCF----DADILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHH-HHHHHHcCC------EEEEeCCC----CHHHhCCcEEEEEC
Confidence 57899999999999999999999999999998765322 222222222 22222111 01111248899999
Q ss_pred ccCC
Q 018550 276 TGLT 279 (354)
Q Consensus 276 ~G~~ 279 (354)
||-.
T Consensus 77 t~d~ 80 (205)
T TIGR01470 77 TDDE 80 (205)
T ss_pred CCCH
Confidence 9885
No 449
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.82 E-value=0.0024 Score=58.44 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=29.6
Q ss_pred eEEEEccCCCHHHHHHHHhcc--CCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~ 230 (354)
.|+|||||.+|+-+|..|++. |.+|+++.+.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 599999999999999999998 99999999863
No 450
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.78 E-value=0.0036 Score=57.34 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 569999999999999999999999999999875
No 451
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.78 E-value=0.001 Score=61.31 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=34.5
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
...+++|+|||+|+.|+.+|..|++.|..|+++.+.+.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 34569999999999999999999999999999998775
No 452
>PLN02785 Protein HOTHEAD
Probab=96.72 E-value=0.0018 Score=62.07 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.+|++|||+|.+|+.+|..|++ +.+|+|+|++.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 4799999999999999999999 69999999985
No 453
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.70 E-value=0.0023 Score=53.58 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=30.4
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|+|||+|..|+-+|..|...|.+|+++.++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 58999999999999999999999999999876
No 454
>PRK06996 hypothetical protein; Provisional
Probab=96.68 E-value=0.0031 Score=57.87 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=29.2
Q ss_pred CeEEEEccCCCHHHHHHHHhccC----CEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA----KEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g----~~v~~~~r~~ 230 (354)
..|+|||||++|+-+|..|++.| .+|+++++.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 46999999999999999999886 4799999864
No 455
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.66 E-value=0.0033 Score=57.17 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccC--CEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g--~~v~~~~r~~ 230 (354)
-.|+|||||.+|+-+|.+|++.. .+|.++++.+
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~ 38 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED 38 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 35999999999999999999998 8999999977
No 456
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.64 E-value=0.0024 Score=50.17 Aligned_cols=32 Identities=38% Similarity=0.627 Sum_probs=30.3
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+|+|||||..|.++|..|+++|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999864
No 457
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.64 E-value=0.0027 Score=54.72 Aligned_cols=39 Identities=38% Similarity=0.660 Sum_probs=34.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC--Cccce
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGS 40 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~--~~gg~ 40 (354)
..+|+|||+|.||+.+|.+|+..|.+|+++|.+. .+||+
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 3689999999999999999999999999999864 35544
No 458
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.63 E-value=0.0039 Score=59.64 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 569999999999999999999999999999876
No 459
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.62 E-value=0.0058 Score=59.96 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|.+|+-+|..|+++|.+|+++.+..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 579999999999999999999999999999863
No 460
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.62 E-value=0.0068 Score=58.56 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=32.2
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+..+|+|||||+.|+-+|..|++.|.+|++++|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 55779999999999999999999999999999854
No 461
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.60 E-value=0.0019 Score=53.64 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=53.2
Q ss_pred EEEEccCCCHHHHHHHHhcc--CCEEEEEEecCC----------ccccccC----------CCCCCeEEecceeEEecCC
Q 018550 200 VILIGHYASGLDIKRDLAGF--AKEVHIASRSVA----------DETHEKQ----------PGYDNMWLHSMVERANEDG 257 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~~----------~~~~~~l----------~~~~~~~~~~~v~~v~~~~ 257 (354)
.+|||||..|+-+|..|+.. .++|.+++.++- .+.+++. ...-+-.++. |.......
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~~~s~e 80 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVTWDSSE 80 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhhhcccc
Confidence 58999999999999999765 677888888874 1111111 1111111112 33333222
Q ss_pred c-EEEccCcEEecCEEEEcccCC
Q 018550 258 T-VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 258 ~-v~~~~g~~~~~D~vi~a~G~~ 279 (354)
. +++.+|.++.++.+.+|+|++
T Consensus 81 hci~t~~g~~~ky~kKOG~tg~k 103 (334)
T KOG2755|consen 81 HCIHTQNGEKLKYFKLCLCTGYK 103 (334)
T ss_pred ceEEecCCceeeEEEEEEecCCC
Confidence 2 889999999999999999999
No 462
>PRK11445 putative oxidoreductase; Provisional
Probab=96.59 E-value=0.0051 Score=55.38 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=28.7
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|++|+-+|..|++. .+|+++.+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 589999999999999999998 8999999865
No 463
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.57 E-value=0.0026 Score=42.06 Aligned_cols=30 Identities=27% Similarity=0.229 Sum_probs=27.3
Q ss_pred EEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 202 LIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 202 ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998874
No 464
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.56 E-value=0.0042 Score=56.22 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=33.6
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
-.++++|||||.+|++.|..|++.|-+|+++.+.+.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 358899999999999999999999999999999885
No 465
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.49 E-value=0.027 Score=51.78 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE-EEeecCCceEEEEeCEEEEeeCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVVCNGH 164 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~~~~d~vIlAtG~ 164 (354)
.++.+.+.+.+.+.|++ +..+++|.++...+ +.... ...++ ....+.+|.+|+|+|.
T Consensus 259 ~rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~-~~V~~v~~~~g--~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 259 LRLQNALRRAFERLGGR--IMPGDEVLGAEFEG-GRVTAVWTRNH--GDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CEEEEEEeeCC--ceEEEECCEEEEeCCC
Confidence 45777788888888988 99999999998766 44433 23222 2357899999999994
No 466
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.48 E-value=0.0089 Score=53.22 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+|+|||||.+|+-.|..|++.|-+|.+++.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 569999999999999999999999999999855
No 467
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.44 E-value=0.0058 Score=58.58 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 569999999999999999999999999999876
No 468
>PRK06185 hypothetical protein; Provisional
Probab=96.43 E-value=0.0062 Score=56.07 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||||++|+-+|..|++.|.+|+++.+.+
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 569999999999999999999999999999864
No 469
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.36 E-value=0.0092 Score=54.60 Aligned_cols=33 Identities=27% Similarity=0.220 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 569999999999999999999999999999866
No 470
>PRK07538 hypothetical protein; Provisional
Probab=96.35 E-value=0.01 Score=54.72 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=30.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 59999999999999999999999999999876
No 471
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.35 E-value=0.0057 Score=49.23 Aligned_cols=32 Identities=38% Similarity=0.610 Sum_probs=28.3
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 68999999999999999999999999999864
No 472
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.0056 Score=51.18 Aligned_cols=34 Identities=41% Similarity=0.712 Sum_probs=31.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++++|||+|..|..+|..|.+.|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 5799999999999999999999999999999753
No 473
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.30 E-value=0.0042 Score=55.69 Aligned_cols=39 Identities=36% Similarity=0.558 Sum_probs=35.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~ 40 (354)
.+|++|||+|.-|+.+|..|++.|.+|+++|++...||.
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGa 52 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGA 52 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcc
Confidence 579999999999999999999999999999998666544
No 474
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.29 E-value=0.0098 Score=54.39 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=29.5
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.|+|||+|++|.-+|..|++.|.+|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999987
No 475
>PRK06126 hypothetical protein; Provisional
Probab=96.26 E-value=0.0085 Score=57.46 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..+|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3569999999999999999999999999999876
No 476
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.18 E-value=0.038 Score=53.13 Aligned_cols=64 Identities=11% Similarity=-0.084 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
...+...+.+.+.+.+++ +..++.++++..++++ ..-+...+ .++....+.++.||+|||.+..
T Consensus 125 G~~i~~~L~~~~~~~gi~--i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTT--FLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHHHHHhccCCE--EEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 467788888877777888 8999999999875323 22333322 2334567899999999997553
No 477
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.17 E-value=0.0062 Score=49.19 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=27.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++|.|||.|+.|+..|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5899999999999999999999999999998653
No 478
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.13 E-value=0.006 Score=44.13 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=31.9
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++++++|||+|..|..-+..|.+.|++|++++...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 67999999999999999999999999999998874
No 479
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.12 E-value=0.0056 Score=44.28 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||+|..|..-+..|.+.|.+|+++.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 578999999999999999999999999999985
No 480
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.11 E-value=0.0089 Score=49.05 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=31.9
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+++|+|||||.+|...+..|.+.|.+|+++.+..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 67999999999999999999999999999997643
No 481
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.02 E-value=0.0061 Score=55.40 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|+|||||++|+++|..|++.|.+|+++.+++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999999644
No 482
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.98 E-value=0.014 Score=45.84 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~ 33 (354)
.++|+|||||..|..-+..|.+.|.+|+++++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 47899999999999999999999999999964
No 483
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.89 E-value=0.015 Score=47.88 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||||..|..-+..|.+.|.+|+|++++
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 478999999999999999999999999999875
No 484
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.89 E-value=0.009 Score=56.25 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV 37 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~ 37 (354)
.+|.+|||||-||+.+|..|++. .++|.|+|++...
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 58999999999999999999997 5899999997554
No 485
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.88 E-value=0.012 Score=52.67 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
|+++|.|||+|..|...|..|++.|++|+++++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6789999999999999999999999999999985
No 486
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.83 E-value=0.028 Score=51.25 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
+...+...+.+.+.+ |++ ++.+++|++++.++ +.|.+.+.++. .+.+|.||+|+|.|+...
T Consensus 133 dp~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RLT--LHFNTEITSLERDG-EGWQLLDANGE----VIAASVVVLANGAQAGQL 193 (381)
T ss_pred ChHHHHHHHHhccCC-CcE--EEeCCEEEEEEEcC-CeEEEEeCCCC----EEEcCEEEEcCCcccccc
Confidence 446777777777777 888 89999999998866 67888877763 589999999999876543
No 487
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.81 E-value=0.013 Score=51.71 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=31.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||+|..|.+.|..|+++|++|+++|+.+
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 3579999999999999999999999999999864
No 488
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.80 E-value=0.02 Score=53.29 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=28.1
Q ss_pred eEEEEccCCCHHHHHHHHhc----cCCEEEEEEe
Q 018550 199 VVILIGHYASGLDIKRDLAG----FAKEVHIASR 228 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~----~g~~v~~~~r 228 (354)
.|+|||+|++|+-+|..|++ .|.+|+++.+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 48999999999999999998 7999999998
No 489
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.79 E-value=0.035 Score=50.65 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=28.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccC---CEEEEEEecCC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA---KEVHIASRSVA 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g---~~v~~~~r~~~ 231 (354)
.+|+|||+|.+|+.+|.+|.+.- ..|+++..++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 47999999999999999997652 23999988774
No 490
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.25 Score=43.30 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=69.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|+|+|||||-+|+.+|..|+.-=-.|+++|=.+.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL-------------------------------------------- 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL-------------------------------------------- 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh--------------------------------------------
Confidence 479999999999999999998766689999854322
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vI 159 (354)
+....+++.+.. .+++ +..+..-++|.-+.++--.+...+. .+++..+.-+-|.
T Consensus 390 ----------------------kAD~VLq~kl~sl~Nv~--ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvF 445 (520)
T COG3634 390 ----------------------KADAVLQDKLRSLPNVT--IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVF 445 (520)
T ss_pred ----------------------hhHHHHHHHHhcCCCcE--EEecceeeEEecCCceecceEEEeccCCceeEEEeeeeE
Confidence 112334444443 3666 8888888888766423233444442 3445677778889
Q ss_pred EeeCCCCCcccCCCCC
Q 018550 160 VCNGHFSVPRLAQVPG 175 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g 175 (354)
+-.| -.|+...++|
T Consensus 446 VqIG--L~PNT~WLkg 459 (520)
T COG3634 446 VQIG--LLPNTEWLKG 459 (520)
T ss_pred EEEe--cccChhHhhc
Confidence 9999 5666555554
No 491
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.74 E-value=0.013 Score=54.95 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=30.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
+|+|||.|++|+++|+.|.+.|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998654
No 492
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.74 E-value=0.018 Score=50.77 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
|.++|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5689999999999999999999999999999995
No 493
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.71 E-value=0.016 Score=54.91 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=30.1
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 459999999999999999999999999999755
No 494
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.69 E-value=0.017 Score=47.82 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=32.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
++++|+|||||.+|..=+..|.+.|++|++++..-.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 568999999999999999999999999999987654
No 495
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=95.65 E-value=0.029 Score=48.64 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
...++|||+|..|+-.|.+|+++|.++.++.+-+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence 3568999999999999999999999999988866
No 496
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.63 E-value=0.016 Score=50.40 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=31.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++|.|||+|..|...|..+++.|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5799999999999999999999999999998653
No 497
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.62 E-value=0.022 Score=46.75 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||||-.|...+..|.+.|.+|+++++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 478999999999999999999999999999864
No 498
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.59 E-value=0.023 Score=43.36 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=30.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
.++|+|||+|--|..+|..|++.|. +++++|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4789999999999999999999998 79999975
No 499
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.57 E-value=0.018 Score=50.75 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=31.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..++.+|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 679999999999999999999999999999864
No 500
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.53 E-value=0.018 Score=50.33 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|+++|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 579999999999999999999999999999864
Done!