Query 018552
Match_columns 354
No_of_seqs 124 out of 1176
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 3.1E-61 6.8E-66 490.7 22.8 335 6-352 130-548 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 4.9E-41 1.1E-45 329.7 13.0 259 27-317 115-452 (498)
3 PF00854 PTR2: POT family; In 100.0 5.2E-38 1.1E-42 306.9 9.2 241 24-278 28-305 (372)
4 TIGR00926 2A1704 Peptide:H+ sy 100.0 4.9E-34 1.1E-38 295.9 23.1 219 27-285 83-342 (654)
5 PRK15462 dipeptide/tripeptide 100.0 7.4E-30 1.6E-34 256.9 23.4 257 30-320 101-439 (493)
6 PRK10207 dipeptide/tripeptide 100.0 2.1E-26 4.7E-31 233.0 24.9 256 30-319 106-439 (489)
7 TIGR00924 yjdL_sub1_fam amino 99.9 4.4E-25 9.6E-30 222.7 22.0 261 28-318 101-440 (475)
8 PRK09584 tppB putative tripept 99.9 3.9E-24 8.5E-29 217.1 21.7 257 29-319 112-442 (500)
9 TIGR00926 2A1704 Peptide:H+ sy 98.4 9.1E-06 2E-10 85.3 18.0 182 27-251 80-271 (654)
10 TIGR00900 2A0121 H+ Antiporter 98.4 3.1E-05 6.7E-10 73.7 18.0 86 28-119 91-176 (365)
11 TIGR00893 2A0114 d-galactonate 98.3 7.1E-05 1.5E-09 71.6 17.8 86 28-119 81-166 (399)
12 PF07690 MFS_1: Major Facilita 98.1 3.5E-05 7.6E-10 73.0 13.2 84 28-117 84-167 (352)
13 PRK11646 multidrug resistance 98.1 0.00011 2.5E-09 72.4 16.5 83 28-117 98-180 (400)
14 PRK10489 enterobactin exporter 98.1 0.00032 7E-09 69.2 19.1 86 28-119 109-194 (417)
15 TIGR00895 2A0115 benzoate tran 98.1 0.00038 8.3E-09 67.0 18.5 84 28-117 104-187 (398)
16 PRK11551 putative 3-hydroxyphe 98.0 0.00024 5.2E-09 69.6 15.7 84 28-117 102-185 (406)
17 PRK14995 methyl viologen resis 98.0 0.00054 1.2E-08 69.6 18.2 87 27-118 92-178 (495)
18 cd06174 MFS The Major Facilita 97.9 0.00048 1E-08 64.8 16.3 88 27-120 85-172 (352)
19 PRK03545 putative arabinose tr 97.9 0.0013 2.8E-08 64.3 18.6 84 28-117 96-179 (390)
20 PRK06814 acylglycerophosphoeth 97.8 0.00056 1.2E-08 76.4 17.6 84 27-116 106-189 (1140)
21 PRK10054 putative transporter; 97.8 0.00074 1.6E-08 66.5 16.2 82 29-117 96-177 (395)
22 TIGR00711 efflux_EmrB drug res 97.8 0.00091 2E-08 66.9 16.8 85 28-118 89-173 (485)
23 PF05977 MFS_3: Transmembrane 97.7 0.002 4.3E-08 66.2 18.3 90 26-121 100-189 (524)
24 TIGR00710 efflux_Bcr_CflA drug 97.7 0.0052 1.1E-07 59.1 20.1 87 28-120 92-178 (385)
25 KOG1330 Sugar transporter/spin 97.7 5.1E-06 1.1E-10 82.2 -1.0 88 27-120 119-208 (493)
26 PRK15402 multidrug efflux syst 97.7 0.0035 7.6E-08 61.5 19.0 85 28-118 100-184 (406)
27 TIGR00902 2A0127 phenyl propri 97.7 0.0027 6E-08 62.0 17.9 82 27-116 92-173 (382)
28 TIGR00901 2A0125 AmpG-related 97.7 0.0026 5.6E-08 61.1 16.9 86 28-119 82-175 (356)
29 TIGR00903 2A0129 major facilit 97.7 0.0018 3.8E-08 63.5 15.8 80 28-114 78-157 (368)
30 PRK10504 putative transporter; 97.6 0.0037 8.1E-08 62.6 18.4 87 28-120 97-183 (471)
31 TIGR00881 2A0104 phosphoglycer 97.6 0.0026 5.7E-08 60.6 16.4 86 28-119 82-168 (379)
32 TIGR00891 2A0112 putative sial 97.6 0.0039 8.4E-08 60.3 17.8 83 28-116 99-183 (405)
33 PRK09874 drug efflux system pr 97.6 0.0028 6E-08 61.8 16.8 84 28-118 106-189 (408)
34 PRK12307 putative sialic acid 97.6 0.0015 3.3E-08 64.3 14.7 79 28-112 105-183 (426)
35 TIGR00879 SP MFS transporter, 97.5 0.0067 1.4E-07 59.6 17.6 86 28-119 126-214 (481)
36 PRK11128 putative 3-phenylprop 97.5 0.0078 1.7E-07 58.7 17.9 82 27-116 92-173 (382)
37 TIGR00788 fbt folate/biopterin 97.5 0.0044 9.6E-08 62.7 15.9 81 34-118 125-205 (468)
38 TIGR00894 2A0114euk Na(+)-depe 97.4 0.0093 2E-07 59.7 17.8 83 29-117 131-214 (465)
39 PRK05122 major facilitator sup 97.4 0.012 2.6E-07 57.4 18.0 79 29-113 112-190 (399)
40 PRK10473 multidrug efflux syst 97.4 0.018 3.8E-07 56.2 18.9 84 28-117 90-173 (392)
41 PRK05122 major facilitator sup 97.4 0.0007 1.5E-08 66.1 8.8 96 29-130 302-397 (399)
42 PRK11652 emrD multidrug resist 97.4 0.018 4E-07 56.1 18.8 83 28-116 95-177 (394)
43 TIGR00880 2_A_01_02 Multidrug 97.3 0.0012 2.5E-08 53.4 8.1 87 28-120 50-136 (141)
44 PRK08633 2-acyl-glycerophospho 97.3 0.015 3.2E-07 64.9 19.4 64 28-97 102-165 (1146)
45 TIGR00898 2A0119 cation transp 97.3 0.02 4.4E-07 57.8 18.7 82 28-118 179-260 (505)
46 TIGR00890 2A0111 Oxalate/Forma 97.3 0.0088 1.9E-07 56.9 14.8 84 28-118 90-173 (377)
47 TIGR00892 2A0113 monocarboxyla 97.3 0.0089 1.9E-07 60.1 15.4 85 29-120 107-192 (455)
48 TIGR00899 2A0120 sugar efflux 97.2 0.028 6E-07 53.9 17.8 87 29-119 87-173 (375)
49 PRK15011 sugar efflux transpor 97.2 0.021 4.6E-07 55.9 17.0 69 45-118 121-190 (393)
50 TIGR00883 2A0106 metabolite-pr 97.1 0.019 4E-07 55.0 15.8 82 30-117 97-186 (394)
51 PRK11102 bicyclomycin/multidru 97.1 0.0035 7.5E-08 60.5 10.7 85 28-118 78-162 (377)
52 PRK12382 putative transporter; 97.1 0.028 6E-07 54.8 17.0 77 28-110 111-187 (392)
53 PRK15403 multidrug efflux syst 97.1 0.004 8.7E-08 61.7 11.0 84 28-117 103-186 (413)
54 PRK11902 ampG muropeptide tran 97.1 0.047 1E-06 53.6 18.1 86 27-118 92-178 (402)
55 PRK09705 cynX putative cyanate 97.0 0.045 9.7E-07 53.7 17.6 84 28-118 96-180 (393)
56 PRK11195 lysophospholipid tran 97.0 0.083 1.8E-06 51.9 19.0 77 33-116 92-168 (393)
57 PRK10213 nepI ribonucleoside t 97.0 0.0032 6.9E-08 62.0 8.8 84 27-116 106-189 (394)
58 PRK11010 ampG muropeptide tran 96.9 0.069 1.5E-06 54.3 18.3 86 27-118 105-191 (491)
59 PRK12382 putative transporter; 96.9 0.0039 8.4E-08 60.8 8.6 86 29-120 302-387 (392)
60 TIGR00896 CynX cyanate transpo 96.9 0.12 2.7E-06 49.5 18.6 82 28-116 86-169 (355)
61 PRK11663 regulatory protein Uh 96.8 0.0061 1.3E-07 60.7 9.4 81 28-114 110-190 (434)
62 PRK09874 drug efflux system pr 96.8 0.004 8.7E-08 60.7 7.6 87 29-121 311-397 (408)
63 TIGR00805 oat sodium-independe 96.7 0.0083 1.8E-07 63.2 9.7 86 28-119 171-278 (633)
64 TIGR00792 gph sugar (Glycoside 96.6 0.11 2.4E-06 51.1 17.0 86 30-120 100-192 (437)
65 PRK10091 MFS transport protein 96.6 0.0086 1.9E-07 58.4 8.3 85 27-117 89-173 (382)
66 PRK03633 putative MFS family t 96.6 0.092 2E-06 51.0 15.6 72 28-105 93-164 (381)
67 COG2814 AraJ Arabinose efflux 96.5 0.39 8.5E-06 47.5 19.2 91 27-123 99-189 (394)
68 PRK11043 putative transporter; 96.5 0.012 2.6E-07 57.5 8.6 86 28-119 93-178 (401)
69 TIGR00890 2A0111 Oxalate/Forma 96.4 0.0097 2.1E-07 56.6 7.6 79 32-116 298-376 (377)
70 cd06174 MFS The Major Facilita 96.4 0.012 2.7E-07 55.1 7.9 85 29-119 265-349 (352)
71 TIGR00712 glpT glycerol-3-phos 96.4 0.023 4.9E-07 56.6 10.0 83 29-117 118-201 (438)
72 PRK10406 alpha-ketoglutarate t 96.3 0.021 4.6E-07 56.7 9.7 80 29-114 124-211 (432)
73 TIGR00889 2A0110 nucleoside tr 96.3 0.012 2.7E-07 58.4 7.8 86 29-120 308-400 (418)
74 PRK03893 putative sialic acid 96.2 0.014 3E-07 58.7 7.6 80 28-113 107-186 (496)
75 PRK10489 enterobactin exporter 96.1 0.019 4E-07 56.6 8.0 86 29-120 312-397 (417)
76 PRK03699 putative transporter; 96.1 0.04 8.7E-07 53.9 9.9 85 28-118 94-179 (394)
77 TIGR00893 2A0114 d-galactonate 96.0 0.028 6.1E-07 53.5 8.3 79 35-119 317-396 (399)
78 KOG2532 Permease of the major 95.9 0.34 7.3E-06 49.2 16.1 83 32-120 131-214 (466)
79 TIGR00897 2A0118 polyol permea 95.9 0.89 1.9E-05 44.5 18.7 72 28-105 104-176 (402)
80 TIGR00899 2A0120 sugar efflux 95.9 0.031 6.7E-07 53.6 8.2 84 30-120 289-372 (375)
81 TIGR02332 HpaX 4-hydroxyphenyl 95.9 0.027 5.9E-07 55.7 7.9 83 28-116 95-183 (412)
82 TIGR01301 GPH_sucrose GPH fami 95.9 0.052 1.1E-06 55.2 10.0 92 30-125 115-221 (477)
83 PRK03633 putative MFS family t 95.9 0.033 7.2E-07 54.2 8.3 78 33-116 289-366 (381)
84 TIGR01272 gluP glucose/galacto 95.8 0.043 9.3E-07 52.4 8.7 88 25-118 6-109 (310)
85 PRK10077 xylE D-xylose transpo 95.7 0.047 1E-06 54.6 8.9 85 27-117 118-210 (479)
86 KOG3764 Vesicular amine transp 95.6 0.02 4.3E-07 56.4 5.5 109 27-140 157-268 (464)
87 TIGR00892 2A0113 monocarboxyla 95.5 0.017 3.7E-07 58.0 4.9 88 28-121 332-420 (455)
88 TIGR00886 2A0108 nitrite extru 95.4 0.085 1.8E-06 50.4 9.0 76 28-110 90-176 (366)
89 PRK10642 proline/glycine betai 95.4 0.088 1.9E-06 53.3 9.5 76 31-112 120-203 (490)
90 PRK11273 glpT sn-glycerol-3-ph 95.3 0.09 1.9E-06 52.6 9.4 82 28-115 119-201 (452)
91 PRK03545 putative arabinose tr 95.3 0.12 2.5E-06 50.4 9.8 88 29-123 294-381 (390)
92 PRK09705 cynX putative cyanate 95.1 0.09 2E-06 51.6 8.5 79 37-120 300-379 (393)
93 KOG1237 H+/oligopeptide sympor 95.1 0.14 3.1E-06 53.2 10.2 78 28-120 58-135 (571)
94 PRK09528 lacY galactoside perm 95.1 0.26 5.7E-06 48.5 11.6 49 71-120 141-189 (420)
95 TIGR02718 sider_RhtX_FptX side 95.0 2.5 5.4E-05 41.1 18.3 50 70-119 132-181 (390)
96 TIGR00885 fucP L-fucose:H+ sym 95.0 0.099 2.1E-06 51.9 8.4 86 27-118 92-203 (410)
97 PRK15011 sugar efflux transpor 94.8 0.15 3.3E-06 49.8 9.1 75 39-120 315-389 (393)
98 PRK09528 lacY galactoside perm 94.8 0.066 1.4E-06 52.8 6.5 85 29-119 315-400 (420)
99 PF13347 MFS_2: MFS/sugar tran 94.7 1 2.3E-05 44.5 15.1 92 28-124 102-200 (428)
100 TIGR00879 SP MFS transporter, 94.7 0.12 2.5E-06 50.8 8.0 68 46-119 400-467 (481)
101 TIGR00887 2A0109 phosphate:H+ 94.6 0.18 3.9E-06 51.2 9.4 82 29-116 115-219 (502)
102 TIGR00882 2A0105 oligosacchari 94.4 1.2 2.6E-05 43.4 14.4 71 37-116 107-177 (396)
103 PRK03699 putative transporter; 94.2 0.1 2.3E-06 51.0 6.5 78 32-116 297-374 (394)
104 PRK09952 shikimate transporter 94.2 0.27 5.9E-06 49.0 9.5 77 31-113 127-211 (438)
105 PRK15075 citrate-proton sympor 93.9 0.32 6.9E-06 48.3 9.3 73 31-109 119-199 (434)
106 PRK09669 putative symporter Ya 93.9 0.24 5.2E-06 49.4 8.3 75 27-101 317-392 (444)
107 TIGR00924 yjdL_sub1_fam amino 93.7 0.17 3.7E-06 51.2 7.0 94 26-125 378-471 (475)
108 PF11700 ATG22: Vacuole efflux 93.6 4 8.6E-05 41.6 16.7 41 283-323 404-444 (477)
109 TIGR01299 synapt_SV2 synaptic 93.6 0.2 4.3E-06 53.8 7.5 74 39-119 658-731 (742)
110 PRK11273 glpT sn-glycerol-3-ph 93.6 0.19 4.2E-06 50.2 7.1 62 52-119 370-432 (452)
111 TIGR00891 2A0112 putative sial 93.6 0.16 3.5E-06 48.9 6.3 74 30-109 329-403 (405)
112 TIGR01299 synapt_SV2 synaptic 93.5 0.24 5.1E-06 53.2 7.8 85 28-118 254-351 (742)
113 PRK11663 regulatory protein Uh 93.3 0.26 5.7E-06 48.9 7.6 52 68-119 370-421 (434)
114 PRK03893 putative sialic acid 93.2 0.29 6.2E-06 49.2 7.8 62 46-113 383-444 (496)
115 PRK09848 glucuronide transport 92.9 4 8.7E-05 40.6 15.4 34 289-322 356-389 (448)
116 TIGR00792 gph sugar (Glycoside 92.8 0.44 9.4E-06 46.9 8.1 91 29-119 311-417 (437)
117 PF03209 PUCC: PUCC protein; 92.6 12 0.00026 37.2 20.3 93 29-127 89-185 (403)
118 PRK10133 L-fucose transporter; 92.5 0.87 1.9E-05 45.5 10.0 62 27-94 115-176 (438)
119 COG2271 UhpC Sugar phosphate p 92.5 0.26 5.7E-06 48.9 5.9 74 44-123 132-208 (448)
120 PRK11646 multidrug resistance 92.4 0.31 6.6E-06 48.0 6.5 84 30-119 298-385 (400)
121 PLN00028 nitrate transmembrane 92.3 0.68 1.5E-05 46.8 9.0 83 28-117 123-214 (476)
122 PRK09556 uhpT sugar phosphate 92.2 0.22 4.7E-06 50.1 5.3 81 27-113 120-203 (467)
123 PRK11010 ampG muropeptide tran 92.2 0.77 1.7E-05 46.7 9.3 74 44-123 331-404 (491)
124 PRK11551 putative 3-hydroxyphe 92.2 0.54 1.2E-05 45.8 7.9 83 30-118 309-392 (406)
125 TIGR02718 sider_RhtX_FptX side 92.0 0.73 1.6E-05 44.8 8.6 71 42-117 316-386 (390)
126 KOG3626 Organic anion transpor 91.8 2.2 4.7E-05 45.6 12.1 89 29-123 237-344 (735)
127 TIGR00897 2A0118 polyol permea 91.8 0.92 2E-05 44.4 9.1 82 29-118 316-397 (402)
128 TIGR00883 2A0106 metabolite-pr 91.7 0.27 5.8E-06 46.9 5.1 79 28-112 311-391 (394)
129 PRK10054 putative transporter; 91.4 1.1 2.3E-05 44.1 9.1 84 29-119 298-381 (395)
130 PRK10213 nepI ribonucleoside t 91.4 0.91 2E-05 44.5 8.6 80 28-114 304-383 (394)
131 PF11700 ATG22: Vacuole efflux 91.1 1.2 2.5E-05 45.4 9.2 87 28-120 379-466 (477)
132 PF03092 BT1: BT1 family; Int 90.9 15 0.00032 36.8 16.8 86 28-117 85-170 (433)
133 PRK11462 putative transporter; 90.8 2.6 5.6E-05 42.4 11.4 83 36-123 116-205 (460)
134 TIGR00902 2A0127 phenyl propri 90.6 1.2 2.5E-05 43.4 8.4 84 28-119 292-376 (382)
135 PRK09669 putative symporter Ya 90.6 2.5 5.3E-05 42.1 10.8 83 30-117 110-199 (444)
136 KOG2533 Permease of the major 90.5 0.47 1E-05 48.5 5.6 80 31-116 136-221 (495)
137 PRK09952 shikimate transporter 90.2 1.5 3.4E-05 43.6 9.1 84 32-121 346-432 (438)
138 COG2807 CynX Cyanate permease 90.1 1.7 3.7E-05 42.5 8.7 88 28-122 98-186 (395)
139 PRK09556 uhpT sugar phosphate 89.9 1.3 2.8E-05 44.4 8.3 63 52-120 372-447 (467)
140 PRK10077 xylE D-xylose transpo 89.5 2.7 5.8E-05 41.8 10.2 78 35-118 369-453 (479)
141 TIGR00881 2A0104 phosphoglycer 89.4 0.56 1.2E-05 44.4 4.9 62 37-104 318-379 (379)
142 PF05977 MFS_3: Transmembrane 89.2 1.4 3.1E-05 45.3 8.1 53 68-120 340-392 (524)
143 TIGR00712 glpT glycerol-3-phos 89.2 0.85 1.8E-05 45.3 6.3 63 52-120 368-431 (438)
144 TIGR00882 2A0105 oligosacchari 89.2 1 2.2E-05 43.9 6.7 83 29-117 307-390 (396)
145 PRK09848 glucuronide transport 88.8 1.7 3.6E-05 43.3 8.1 91 28-118 318-424 (448)
146 TIGR00900 2A0121 H+ Antiporter 88.1 0.75 1.6E-05 43.4 4.9 65 29-99 301-365 (365)
147 PRK11902 ampG muropeptide tran 87.6 1.8 4E-05 42.3 7.4 74 39-122 317-390 (402)
148 PF13347 MFS_2: MFS/sugar tran 87.2 2.1 4.6E-05 42.3 7.7 74 27-100 313-387 (428)
149 PRK15034 nitrate/nitrite trans 86.9 5 0.00011 40.7 10.1 87 27-120 126-230 (462)
150 PRK10642 proline/glycine betai 86.6 4 8.8E-05 41.2 9.5 72 29-106 342-414 (490)
151 TIGR01272 gluP glucose/galacto 86.3 1.4 3E-05 42.0 5.6 71 34-112 235-305 (310)
152 TIGR00894 2A0114euk Na(+)-depe 85.9 2.8 6.1E-05 41.8 7.8 53 68-120 393-448 (465)
153 PRK15075 citrate-proton sympor 85.9 3.3 7.1E-05 41.0 8.2 60 35-100 337-397 (434)
154 PRK11652 emrD multidrug resist 85.5 4.3 9.3E-05 39.3 8.7 81 29-116 299-379 (394)
155 TIGR00887 2A0109 phosphate:H+ 84.8 5.3 0.00012 40.5 9.3 63 48-116 411-483 (502)
156 PRK06814 acylglycerophosphoeth 84.8 3.3 7.2E-05 46.4 8.5 80 28-113 333-413 (1140)
157 COG2814 AraJ Arabinose efflux 84.6 8.1 0.00018 38.4 10.1 59 69-127 333-391 (394)
158 PRK10504 putative transporter; 84.3 4.5 9.7E-05 40.3 8.4 65 31-101 355-419 (471)
159 PRK10091 MFS transport protein 83.9 4.9 0.00011 38.9 8.3 44 77-120 330-374 (382)
160 PRK10429 melibiose:sodium symp 83.9 4.2 9.1E-05 40.9 8.0 73 28-100 323-396 (473)
161 TIGR00898 2A0119 cation transp 83.9 3.1 6.7E-05 41.9 7.1 71 39-117 420-490 (505)
162 TIGR02332 HpaX 4-hydroxyphenyl 83.6 1.5 3.2E-05 43.3 4.5 44 68-111 366-410 (412)
163 PRK08633 2-acyl-glycerophospho 83.4 5.7 0.00012 44.4 9.6 79 28-112 321-400 (1146)
164 PF14007 YtpI: YtpI-like prote 83.4 4.4 9.6E-05 31.4 6.1 69 56-130 18-86 (89)
165 PRK11128 putative 3-phenylprop 82.9 5 0.00011 38.8 7.9 80 28-115 292-372 (382)
166 PRK12307 putative sialic acid 82.7 6 0.00013 38.7 8.4 57 45-107 337-393 (426)
167 COG0738 FucP Fucose permease [ 82.5 5.6 0.00012 39.5 7.9 68 23-96 98-165 (422)
168 PF03825 Nuc_H_symport: Nucleo 82.3 6.9 0.00015 38.8 8.7 84 33-122 305-395 (400)
169 PF06609 TRI12: Fungal trichot 82.0 4.8 0.0001 42.2 7.6 88 25-119 127-214 (599)
170 PRK10429 melibiose:sodium symp 81.1 12 0.00027 37.5 10.2 82 37-123 114-202 (473)
171 PRK15402 multidrug efflux syst 81.0 8.8 0.00019 37.4 8.9 73 28-107 308-380 (406)
172 PLN00028 nitrate transmembrane 81.0 3.3 7.2E-05 41.8 6.0 83 32-122 351-433 (476)
173 KOG0252 Inorganic phosphate tr 79.7 8.1 0.00017 39.2 7.9 88 36-125 41-136 (538)
174 PRK10133 L-fucose transporter; 79.4 4.6 9.9E-05 40.4 6.4 81 33-121 351-432 (438)
175 PRK09584 tppB putative tripept 79.3 4.7 0.0001 41.1 6.5 93 27-125 380-482 (500)
176 TIGR00903 2A0129 major facilit 79.0 7.7 0.00017 37.8 7.7 67 43-117 294-360 (368)
177 TIGR00889 2A0110 nucleoside tr 77.7 62 0.0013 31.9 13.8 38 281-318 330-368 (418)
178 PRK11043 putative transporter; 77.3 13 0.00028 36.1 8.7 70 30-106 297-366 (401)
179 KOG2615 Permease of the major 77.2 49 0.0011 33.0 12.3 43 280-322 373-415 (451)
180 PRK11195 lysophospholipid tran 76.8 14 0.00031 36.0 8.9 81 30-116 294-374 (393)
181 PRK11462 putative transporter; 75.3 12 0.00025 37.7 8.0 70 31-100 320-390 (460)
182 KOG0254 Predicted transporter 75.3 30 0.00064 35.2 11.1 96 26-122 42-140 (513)
183 TIGR00806 rfc RFC reduced fola 75.0 11 0.00023 38.7 7.5 82 28-117 114-198 (511)
184 PF06645 SPC12: Microsomal sig 75.0 13 0.00028 27.9 6.2 56 71-129 8-63 (76)
185 KOG2504 Monocarboxylate transp 74.5 1.8 3.9E-05 44.5 1.9 82 35-122 394-476 (509)
186 PF01306 LacY_symp: LacY proto 74.3 42 0.00091 33.6 11.4 50 70-120 137-186 (412)
187 TIGR00895 2A0115 benzoate tran 73.9 3.9 8.5E-05 38.9 4.0 61 28-94 337-397 (398)
188 PRK10406 alpha-ketoglutarate t 73.9 14 0.00031 36.4 8.2 67 47-119 354-421 (432)
189 KOG0254 Predicted transporter 73.8 15 0.00031 37.5 8.4 83 28-117 141-225 (513)
190 TIGR00769 AAA ADP/ATP carrier 73.3 16 0.00034 37.3 8.3 85 29-118 264-350 (472)
191 TIGR00710 efflux_Bcr_CflA drug 72.5 19 0.0004 34.3 8.4 75 30-112 301-376 (385)
192 PF03137 OATP: Organic Anion T 71.0 1.1 2.4E-05 46.3 -0.6 87 29-121 141-249 (539)
193 PRK10207 dipeptide/tripeptide 71.0 11 0.00024 38.3 6.7 93 28-126 378-480 (489)
194 PTZ00207 hypothetical protein; 69.0 22 0.00048 37.3 8.5 77 27-112 118-195 (591)
195 COG2223 NarK Nitrate/nitrite t 65.8 29 0.00064 34.6 8.1 78 39-124 115-195 (417)
196 TIGR00885 fucP L-fucose:H+ sym 65.7 11 0.00024 37.2 5.4 74 33-114 325-404 (410)
197 KOG0255 Synaptic vesicle trans 64.9 37 0.00081 34.4 9.1 82 27-117 169-250 (521)
198 TIGR00896 CynX cyanate transpo 63.4 14 0.00031 35.0 5.5 59 36-99 292-350 (355)
199 KOG4686 Predicted sugar transp 63.0 17 0.00037 34.9 5.6 80 33-118 356-438 (459)
200 PF07690 MFS_1: Major Facilita 62.3 40 0.00086 31.3 8.2 76 33-116 2-77 (352)
201 TIGR00769 AAA ADP/ATP carrier 60.6 33 0.00071 35.0 7.6 38 52-95 152-189 (472)
202 KOG3764 Vesicular amine transp 57.9 14 0.00031 36.8 4.3 97 24-120 356-453 (464)
203 PF03825 Nuc_H_symport: Nucleo 55.6 25 0.00055 34.8 5.8 40 279-318 321-361 (400)
204 KOG4112 Signal peptidase subun 54.9 41 0.00089 26.2 5.5 53 73-128 25-77 (101)
205 PF10762 DUF2583: Protein of u 54.4 62 0.0014 24.7 6.2 9 340-348 68-76 (89)
206 TIGR00711 efflux_EmrB drug res 52.5 24 0.00052 35.0 5.1 65 28-98 347-411 (485)
207 COG0477 ProP Permeases of the 52.4 83 0.0018 27.5 8.3 81 28-113 93-176 (338)
208 PF03219 TLC: TLC ATP/ADP tran 51.8 57 0.0012 33.4 7.7 68 46-118 299-367 (491)
209 PRK10692 hypothetical protein; 50.9 79 0.0017 24.3 6.3 8 341-348 69-76 (92)
210 COG2270 Permeases of the major 50.6 42 0.00091 33.7 6.3 79 37-121 349-428 (438)
211 KOG2927 Membrane component of 50.5 17 0.00036 35.2 3.4 56 255-318 182-237 (372)
212 PTZ00207 hypothetical protein; 48.3 58 0.0012 34.2 7.3 81 30-117 453-547 (591)
213 PRK15403 multidrug efflux syst 48.2 76 0.0016 31.1 7.9 80 31-118 314-393 (413)
214 KOG2533 Permease of the major 47.8 31 0.00068 35.3 5.2 32 289-320 164-195 (495)
215 TIGR00880 2_A_01_02 Multidrug 47.5 80 0.0017 24.3 6.7 37 283-319 75-111 (141)
216 KOG2532 Permease of the major 46.3 29 0.00064 35.2 4.7 51 70-120 392-445 (466)
217 PF05631 DUF791: Protein of un 45.8 1.2E+02 0.0025 29.8 8.4 103 20-123 112-217 (354)
218 KOG1330 Sugar transporter/spin 43.6 8.2 0.00018 39.1 0.2 40 283-322 145-184 (493)
219 TIGR00788 fbt folate/biopterin 43.2 80 0.0017 31.8 7.3 72 37-114 359-435 (468)
220 PRK14995 methyl viologen resis 42.7 45 0.00098 33.7 5.4 61 30-96 352-412 (495)
221 COG2270 Permeases of the major 42.3 3.8E+02 0.0082 27.1 15.6 41 283-323 365-405 (438)
222 COG2211 MelB Na+/melibiose sym 41.7 71 0.0015 32.5 6.5 75 26-100 324-399 (467)
223 TIGR00886 2A0108 nitrite extru 39.8 1.4E+02 0.003 28.1 8.0 48 73-120 39-86 (366)
224 KOG0569 Permease of the major 39.5 1.2E+02 0.0025 31.2 7.7 54 68-121 57-110 (485)
225 KOG2504 Monocarboxylate transp 36.3 78 0.0017 32.5 6.0 90 27-123 132-222 (509)
226 PF00854 PTR2: POT family; In 35.7 33 0.00071 33.2 3.0 86 213-300 202-296 (372)
227 COG2211 MelB Na+/melibiose sym 34.2 4.6E+02 0.0099 26.8 10.9 77 36-117 119-202 (467)
228 PF03219 TLC: TLC ATP/ADP tran 34.0 78 0.0017 32.5 5.5 39 52-96 167-205 (491)
229 PRK00753 psbL photosystem II r 31.6 69 0.0015 20.5 2.9 23 19-41 6-28 (39)
230 CHL00038 psbL photosystem II p 31.4 70 0.0015 20.4 2.9 24 18-41 4-27 (38)
231 PF03209 PUCC: PUCC protein; 28.7 1.6E+02 0.0034 29.5 6.4 52 265-316 86-146 (403)
232 PRK10473 multidrug efflux syst 27.6 3E+02 0.0065 26.3 8.3 37 79-115 331-367 (392)
233 TIGR00806 rfc RFC reduced fola 26.9 1.8E+02 0.0038 30.1 6.5 38 281-318 136-173 (511)
234 PRK09597 lipid A 1-phosphatase 26.2 2.9E+02 0.0063 24.6 7.0 34 1-43 1-34 (190)
235 PRK11102 bicyclomycin/multidru 26.1 3.6E+02 0.0078 25.3 8.5 80 33-121 291-371 (377)
236 COG2271 UhpC Sugar phosphate p 24.7 38 0.00083 34.0 1.3 39 82-120 394-432 (448)
237 PF00083 Sugar_tr: Sugar (and 23.9 9.5 0.00021 37.6 -3.2 66 45-116 365-430 (451)
238 PF03839 Sec62: Translocation 23.1 1.4E+02 0.0031 27.2 4.6 49 257-315 105-155 (224)
239 PF09125 COX2-transmemb: Cytoc 21.6 1.7E+02 0.0037 18.7 3.3 22 99-121 15-36 (38)
240 PF02419 PsbL: PsbL protein; 21.5 58 0.0013 20.7 1.2 23 19-41 4-26 (37)
241 PRK15034 nitrate/nitrite trans 21.4 5.2E+02 0.011 26.3 8.8 94 27-120 343-452 (462)
242 KOG2816 Predicted transporter 21.1 3.6E+02 0.0078 27.4 7.6 75 43-120 123-197 (463)
243 PF11027 DUF2615: Protein of u 21.0 1.3E+02 0.0029 24.0 3.5 27 102-128 54-80 (103)
244 COG2807 CynX Cyanate permease 20.0 3E+02 0.0066 27.3 6.4 84 36-127 303-391 (395)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-61 Score=490.69 Aligned_cols=335 Identities=42% Similarity=0.666 Sum_probs=295.7
Q ss_pred CCCCCCcccccCCCCCcCCCcchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 018552 6 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 85 (354)
Q Consensus 6 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGsl 85 (354)
.+|.+| .-.-.+..|+.|+..+...||.+|+++++|+|++|||+.++++||||+.+++++..+.++|+|||+.+|+|++
T Consensus 130 l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l 208 (571)
T KOG1237|consen 130 LLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGAL 208 (571)
T ss_pred cCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHH
Confidence 355566 2222367899999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhcccceeecCCCCCchhHHHHHHHHHHHhcccccCCcccccccccC
Q 018552 86 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVP 165 (354)
Q Consensus 86 ia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~g~~~y~~~~p~gspl~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~ 165 (354)
++.++.+|+|++.||.+||++++++|++++++|+.|++.|++++|.|+|++.+.+|+++++++++...+.+.+. + +.
T Consensus 209 ~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~-~~- 285 (571)
T KOG1237|consen 209 LAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L-YY- 285 (571)
T ss_pred HHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c-cc-
Confidence 99999999999999999999999999999999999999999999999999999999999999988776655332 2 11
Q ss_pred CCcccccCCcccccCCchhhhhHhHhhhhccc---CCCCCcccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhH
Q 018552 166 GKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 242 (354)
Q Consensus 166 ~~~~~~~~~~~i~~~~~~~~l~~a~~~~~~~~---~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~ 242 (354)
...+.....+++.++++|+|+.+...+. ...+||++|+++||||+|+++|++|+|++.++||+++.|+.|.++
T Consensus 286 ----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v 361 (571)
T KOG1237|consen 286 ----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFV 361 (571)
T ss_pred ----cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhhee
Confidence 0111123345778899999998754321 125789999999999999999999999999999999999999999
Q ss_pred hhhhhhcccc--------------------------------------ccCCCCCchHHHHHHHHHHHHHHHHH------
Q 018552 243 QQAYTMNTHM--------------------------------------GHPRGASQLQRVGIGLAVSILSVIWA------ 278 (354)
Q Consensus 243 lqa~~md~~i--------------------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a------ 278 (354)
+||.+|||++ +++++++++|||++|++++.++|.++
T Consensus 362 ~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~k 441 (571)
T KOG1237|consen 362 LQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAK 441 (571)
T ss_pred hhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHH
Confidence 9999999986 23356899999999999999999887
Q ss_pred ------------------------------------HHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 018552 279 ------------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 322 (354)
Q Consensus 279 ------------------------------------~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~~~t 322 (354)
|++||+|+|+|++|||+++++|+++.|+|++++.++++++++.|
T Consensus 442 rl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 442 RLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred HhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCC-CCCCcCcchHHHHHHhhc
Q 018552 323 GNPKKGQPNWLA-QNINTDTSTGLSRSMAMT 352 (354)
Q Consensus 323 ~~~~~~~~~W~~-~~ln~~~ld~~~~~~~~~ 352 (354)
+ + ..+|++ +|||++|+|||||++|.+
T Consensus 522 ~--~--~~~w~~~~~ln~~~ld~Fy~lla~~ 548 (571)
T KOG1237|consen 522 G--K--AAEWLGFANLNKGRLDYFYWLLAVY 548 (571)
T ss_pred C--C--CcccCChhHhhhhHHHHHHHHHHHH
Confidence 5 3 458999 999999999999999865
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-41 Score=329.70 Aligned_cols=259 Identities=17% Similarity=0.218 Sum_probs=201.7
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.....+|+||.+|++|+|++|||+++++||||+++||| ||.+|++||+++|+|+++++++++|+++++||+++|++
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 56889999999999999999999999999999999995 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccceeecC--CCCCchhH------HHHHHHHHHHh--cccccCCcccccccccCCCcccccCCcc
Q 018552 107 LAIAMGISNMLFFIGTPLYRHRL--PGGSPLTR------VAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGSGK 176 (354)
Q Consensus 107 ~~v~m~ial~~f~~g~~~y~~~~--p~gspl~~------~~~v~~~a~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 176 (354)
++++|.+++++|+++++++...+ |+.+|++. ...+++..+.. .... ..+ .+... ..
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~----~~~~~---------~~ 256 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLL-NQN----TFSGV---------LL 256 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHH-HHH----HHHHH---------HH
Confidence 99999999999999999887763 44444321 11111111110 0000 000 00000 00
Q ss_pred cccCCchhhhhHhHhhhhcccCCCCCcccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhh-hcccc---
Q 018552 177 IAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM--- 252 (354)
Q Consensus 177 i~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~-md~~i--- 252 (354)
+ .. ......+..+. ..| .+.+ ||+||+++++|+|++.++||++|+|++|++++|+++ .||++
T Consensus 257 ~-----~~--i~~~~~~~~~~---~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~ 322 (498)
T COG3104 257 V-----IS--ILIAIIYFAEA---FRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGF 322 (498)
T ss_pred H-----HH--HHHHHHHHHHH---hcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccce
Confidence 0 00 00111111100 111 2345 999999999999999999999999999999999986 68882
Q ss_pred ------------------------------ccCCCCCchHHHHHHHHHHHHHHHHH------------------------
Q 018552 253 ------------------------------GHPRGASQLQRVGIGLAVSILSVIWA------------------------ 278 (354)
Q Consensus 253 ------------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a------------------------ 278 (354)
+++++|+++.|+++|++++++++++.
T Consensus 323 ~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~ 402 (498)
T COG3104 323 EVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYV 402 (498)
T ss_pred ecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHH
Confidence 34578999999999999999999876
Q ss_pred -----------HHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 018552 279 -----------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 317 (354)
Q Consensus 279 -----------~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~ 317 (354)
.++|+.+++||++|+|++||+|+++.++|+.+++.+..+
T Consensus 403 l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 403 LQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred HHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 588899999999999999999999999999999999874
No 3
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=5.2e-38 Score=306.92 Aligned_cols=241 Identities=34% Similarity=0.527 Sum_probs=162.1
Q ss_pred CCcchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 018552 24 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSA 103 (354)
Q Consensus 24 ~~~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~g 103 (354)
+++.+.+++|+||+++++|+|++|||++++++|||+++++ +++|++|+||||++|+|++++.++++|+|+++||+++
T Consensus 28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~ 104 (372)
T PF00854_consen 28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG 104 (372)
T ss_dssp ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence 4567889999999999999999999999999999998853 3699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccceeec-CCCCCchhH-HHHHHHHHHHhcccccCCcccccccccCCCcccccCCcccccCC
Q 018552 104 FGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLTR-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTD 181 (354)
Q Consensus 104 F~i~~v~m~ial~~f~~g~~~y~~~-~p~gspl~~-~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~ 181 (354)
|++|+++|++++++|+.++++|++. +|+++++.+ ...+..++.+++....+..... +.+.... ...... ..
T Consensus 105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~--~~ 177 (372)
T PF00854_consen 105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQ----YSERSI--FG 177 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHH-HHHHHHH----HCCCCC--CC
T ss_pred hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHH-HHHhhhh----hhhhhh--hh
Confidence 9999999999999999999999998 788899888 4444455555554433211110 1110000 000000 00
Q ss_pred chhhhhHhHhhhhcccCCCCCcc-cccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhhhcccc--------
Q 018552 182 DFRCLDKAALELKEDVINPSPWK-LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-------- 252 (354)
Q Consensus 182 ~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~md~~i-------- 252 (354)
.....+.+...... ...|. .++++++++.|.+.+.+|.+.+.++|+..+.|.++....|+.++|+.+
T Consensus 178 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 253 (372)
T PF00854_consen 178 IIVFIRAAVIFFPE----IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPP 253 (372)
T ss_dssp CCCHHHHHHHHCCC----HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------S
T ss_pred hhhhccchhhhhhh----hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhcccccccccccccccc
Confidence 00111111111100 01122 156788999999999999999999999999999999999998887554
Q ss_pred --------------------------ccCCCCCchHHHHHHHHHHHHHHHHH
Q 018552 253 --------------------------GHPRGASQLQRVGIGLAVSILSVIWA 278 (354)
Q Consensus 253 --------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a 278 (354)
++++++++++|+++|+++++++++++
T Consensus 254 ~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~~~k~~~G~~~~~~~~~~~ 305 (372)
T PF00854_consen 254 AWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSPPQKFGIGMVFAILAMFVA 305 (372)
T ss_dssp GGGTTHHHHHCHHHHHHHHHHCCCTTTT------HHHHHHH-HHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHHHHHHHHhHHhhhcccchhhhhhhHHHHHHHHHHHHH
Confidence 55678999999999999999999875
No 4
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=4.9e-34 Score=295.86 Aligned_cols=219 Identities=26% Similarity=0.434 Sum_probs=186.9
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-------c
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-------G 99 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~-------g 99 (354)
.+..++++||+++++|+|++|||++++++|||+++++ ++++++|+||||++|+|+++++++++|+++++ |
T Consensus 83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~ 159 (654)
T TIGR00926 83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC 159 (654)
T ss_pred hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence 3456788999999999999999999999999987554 36999999999999999999999999999665 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccceeecCCCCCchhHHHHHHHHHHHhcccccCCcccccccccCCCcccccCCccccc
Q 018552 100 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH 179 (354)
Q Consensus 100 ~~~gF~i~~v~m~ial~~f~~g~~~y~~~~p~gspl~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~ 179 (354)
|+++|++|+++|++++++|+.++++|++.||+++++.+..++++.+++++....+.
T Consensus 160 ~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------------------------ 215 (654)
T TIGR00926 160 YPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------------------------ 215 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------------------------
Confidence 99999999999999999999999999988999999988889988888764321100
Q ss_pred CCchhhhhHhHhhhhcccCCCCCcccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhhhcccc-------
Q 018552 180 TDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------- 252 (354)
Q Consensus 180 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~md~~i------- 252 (354)
....+|+|.+.... .++++||+|++++++++++..++||++++|++|++++|+.+||+++
T Consensus 216 ~~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~ 282 (654)
T TIGR00926 216 HWPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQP 282 (654)
T ss_pred ccchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCH
Confidence 01136777665331 3467999999999999999999999999999999999999998763
Q ss_pred ---------------------------ccCCCCCchHHHHHHHHHHHHHHHHHHHHhHhh
Q 018552 253 ---------------------------GHPRGASQLQRVGIGLAVSILSVIWAGLLEFLY 285 (354)
Q Consensus 253 ---------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a~~lE~~~ 285 (354)
+++..+++++|+++|++++++++++++..|.-.
T Consensus 283 ~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 283 DQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999998877643
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.97 E-value=7.4e-30 Score=256.91 Aligned_cols=257 Identities=16% Similarity=0.169 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 109 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v 109 (354)
..+++++.++++|+|++|||.+++++|+|+++|++ |+++|+++|+++|+|+++++++++++++++||+++|+++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 45778899999999999999999999999988763 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccceeecCC-CCCchh--HHHHH-----HHHH-----HHhcccccCCcccccccccCCCcccccCCcc
Q 018552 110 AMGISNMLFFIGTPLYRHRLP-GGSPLT--RVAQV-----LVAA-----FRKRHAAFSSSELIGLYEVPGKHSAIKGSGK 176 (354)
Q Consensus 110 ~m~ial~~f~~g~~~y~~~~p-~gspl~--~~~~v-----~~~a-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 176 (354)
+|++++++|+.+++++.+... +.+|.+ +.... +... +...... .... .+
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~-------------- 238 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFW--KEWS--VY-------------- 238 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HH--------------
Confidence 999999999998887755311 112221 11000 0000 0000000 0000 00
Q ss_pred cccCCchhhhhHhHhhhhcccCCCCCcccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhh-hcccc---
Q 018552 177 IAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM--- 252 (354)
Q Consensus 177 i~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~-md~~i--- 252 (354)
...........+.... ... . ...+|+||+..++++++..++||+.|+|+++++++++++ +|+++
T Consensus 239 -----~~~~~~~~~~~~~~~~-~~~-----~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~ 306 (493)
T PRK15462 239 -----ALIVATIIGLGVLAKI-YRK-----A-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGY 306 (493)
T ss_pred -----HHHHHHHHHHHHHHHH-HHh-----c-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcce
Confidence 0000000000000000 000 1 224889999999999999999999999999999999975 89985
Q ss_pred ------------------------------ccCCCCCchHHHHHHHHHHHHHHHHH------------------------
Q 018552 253 ------------------------------GHPRGASQLQRVGIGLAVSILSVIWA------------------------ 278 (354)
Q Consensus 253 ------------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a------------------------ 278 (354)
|++++|+.+.|+++|+++++++|++.
T Consensus 307 ~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~ 386 (493)
T PRK15462 307 TVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAV 386 (493)
T ss_pred eeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence 35668999999999999999999765
Q ss_pred ----------HHHhHhhccCCCchhhHHHHHHHHHH-HHHHHHHHHhhhhhcc
Q 018552 279 ----------GLLEFLYEEAPDAMKSIGSAYAALAG-GLGCFAASILNSIIKS 320 (354)
Q Consensus 279 ----------~~lE~~~~~aP~~m~s~~~g~~~l~~-~iG~~l~~~l~~~~~~ 320 (354)
.++++++|.||++++|++||+|+++. ++|+++++.+.++...
T Consensus 387 ~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~ 439 (493)
T PRK15462 387 MGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQ 439 (493)
T ss_pred HHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35667899999999999999999965 8999999999988743
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.95 E-value=2.1e-26 Score=232.99 Aligned_cols=256 Identities=11% Similarity=0.163 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 109 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v 109 (354)
..+++++.++++|+|++|||..++++|||+++|+ ++++.|++||+++|+|+++++.+++++.+++||+++|.++++
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 4577899999999999999999999999987765 378899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccceeec--CCCCCchh--HHHHHHHHH-----HHhcccccCCcccccccccCCCcccccCCcccccC
Q 018552 110 AMGISNMLFFIGTPLYRHR--LPGGSPLT--RVAQVLVAA-----FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180 (354)
Q Consensus 110 ~m~ial~~f~~g~~~y~~~--~p~gspl~--~~~~v~~~a-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~ 180 (354)
++.++++.++.+++++++. +|++++.. ....+.... ......+.. +.. .+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~-~~~--~~------------------ 240 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV-EVA--NL------------------ 240 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh-hHH--HH------------------
Confidence 9999999999988777654 34343331 111110000 000000000 000 00
Q ss_pred CchhhhhHhHhhhhcccCCCCCcccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhh-hcccc-------
Q 018552 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM------- 252 (354)
Q Consensus 181 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~-md~~i------- 252 (354)
.............. ++..+.+ ..+++|.+..+++++..++||++++|+.+++++|+++ +|++.
T Consensus 241 -~~~~~~~i~~~~f~-------~~~~~~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~ 311 (489)
T PRK10207 241 -VLIVLSIVVTIIFF-------REAFKLD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINP 311 (489)
T ss_pred -HHHHHHHHHHHHHH-------HHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECH
Confidence 00000000000000 0001112 3557788889999999999999999999999999974 66642
Q ss_pred --------------------------ccCCCCCchHHHHHHHHHHHHHHHHH----------------------------
Q 018552 253 --------------------------GHPRGASQLQRVGIGLAVSILSVIWA---------------------------- 278 (354)
Q Consensus 253 --------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a---------------------------- 278 (354)
+|+.++++++|+++|+++++++++++
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 45668999999999999999888531
Q ss_pred -------HHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018552 279 -------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 319 (354)
Q Consensus 279 -------~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~ 319 (354)
.++|++++.+|++++|++||+|+++.++|+.+++.+.+++.
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999999999998875
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.94 E-value=4.4e-25 Score=222.65 Aligned_cols=261 Identities=16% Similarity=0.141 Sum_probs=188.9
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...+++++.++++|+|+++||..++++|+|++++++ +|+++|+++|+++|+|+++++.+.+++++++||+++|.++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 3566788999999999999999999999999876632 4788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccceeecCCCCCchhHH-----H--HHH----HHHHHhcccccCCcccccccccCCCcccccCCcc
Q 018552 108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRV-----A--QVL----VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGK 176 (354)
Q Consensus 108 ~v~m~ial~~f~~g~~~y~~~~p~gspl~~~-----~--~v~----~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 176 (354)
++++++++++|+..++.+++.++++++.+.. . +.+ ...++...........
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 239 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIA------------------ 239 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHH------------------
Confidence 9999999999999888887665444433210 0 000 0111110000000000
Q ss_pred cccCCchhhhhHhHhhhhcccCCCCCcccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhh-hcccc---
Q 018552 177 IAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM--- 252 (354)
Q Consensus 177 i~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~-md~~i--- 252 (354)
.........+..++.... ..+| +.++ +|+++..++++++++.++||+.|+|+.+++.+|+.+ +|+++
T Consensus 240 ---~~~~~~~~~~~~~~~~~~-~~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~ 310 (475)
T TIGR00924 240 ---NILLMTVTLAVIIFFFRL-AFKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGM 310 (475)
T ss_pred ---HHHHHHHHHHHHHHHHHH-HHhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccce
Confidence 000000011111111000 0011 1233 445666789999999999999999999999988754 77763
Q ss_pred ------------------------------ccCCCCCchHHHHHHHHHHHHHHHHH------------------------
Q 018552 253 ------------------------------GHPRGASQLQRVGIGLAVSILSVIWA------------------------ 278 (354)
Q Consensus 253 ------------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a------------------------ 278 (354)
+|+++++++.|+++|+++++++++++
T Consensus 311 ~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~ 390 (475)
T TIGR00924 311 SVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLF 390 (475)
T ss_pred EECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHH
Confidence 34467899999999999999988653
Q ss_pred ----------HHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 018552 279 ----------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 318 (354)
Q Consensus 279 ----------~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~ 318 (354)
++.|++++++|+++||.++|+|.++.++|+++++.+++..
T Consensus 391 ~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 391 QTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred HHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999998765
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.92 E-value=3.9e-24 Score=217.09 Aligned_cols=257 Identities=12% Similarity=0.138 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
...+++++.++++|+|+++|+..++++|+|+++++ ++++.|+++|+++|+|+++++++.+++.+++||+++|.+++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45678889999999999999999999999987664 36789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccceeec--CCCCCchhH--HH----HHHHHHHH-hcccccCCcccccccccCCCcccccCCccccc
Q 018552 109 IAMGISNMLFFIGTPLYRHR--LPGGSPLTR--VA----QVLVAAFR-KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH 179 (354)
Q Consensus 109 v~m~ial~~f~~g~~~y~~~--~p~gspl~~--~~----~v~~~a~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~ 179 (354)
+.++++++.|+..++++++. +|+++|... .. .++..... ......+ + ...
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~---------------- 246 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ---E--IAR---------------- 246 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcc---h--HHH----------------
Confidence 99999999988877766554 344333321 11 11111111 1100000 0 000
Q ss_pred CCchhhhhHhHhhhhcccCCCCCcccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhh-hcccc------
Q 018552 180 TDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM------ 252 (354)
Q Consensus 180 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~-md~~i------ 252 (354)
....+.......... ...+..+ .+|+++++..+++++..++||+.++|+.+++++|+.+ +|+++
T Consensus 247 -~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~ 317 (500)
T PRK09584 247 -MALGVVALGIVVIFG-------KEAFAMK-GAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVE 317 (500)
T ss_pred -HHHHHHHHHHHHHHH-------HHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEEC
Confidence 000000000000000 0001122 3567888888999999999999999999999999975 66543
Q ss_pred ------------------------ccCCCCCchHHHHHHHHHHHHHHHHH------------------------------
Q 018552 253 ------------------------GHPRGASQLQRVGIGLAVSILSVIWA------------------------------ 278 (354)
Q Consensus 253 ------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a------------------------------ 278 (354)
+.++.+++.+|+++|++++++++++.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 33444779999999999999998762
Q ss_pred ----HHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018552 279 ----GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 319 (354)
Q Consensus 279 ----~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~ 319 (354)
.++|++++++|+++||.+||+|+++.++|+.+++.+.+.+.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~ 442 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMA 442 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678899999999999999999999999999999988764
No 9
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.45 E-value=9.1e-06 Score=85.31 Aligned_cols=182 Identities=12% Similarity=-0.024 Sum_probs=128.6
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chHH---
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGS--- 102 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~-g~~~--- 102 (354)
.+.....++++.++++++|.+++.+++.++|.|..++ +++.+.+++|||..+.+.+.+.+ .+.+.... .+..
T Consensus 80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiGSli-s~~i~~~l~~~~~~fg 155 (654)
T TIGR00926 80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAGSLI-STIITPILRGDVGCFG 155 (654)
T ss_pred ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccc
Confidence 3456677788899999999999999999999998764 55668999999999999986554 45554444 4553
Q ss_pred ----HHHHHHHHHHHHHHHHHhcccceeecCCCCCchhHHHHHHHHHHHhcccccCCcccccccccCCCcccccCCcccc
Q 018552 103 ----AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIA 178 (354)
Q Consensus 103 ----gF~i~~v~m~ial~~f~~g~~~y~~~~p~gspl~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 178 (354)
-++..++.+++.++.++.....++..++.+.+-..+.+++......... +.
T Consensus 156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~------------------------~~- 210 (654)
T TIGR00926 156 CQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK------------------------RF- 210 (654)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH------------------------hh-
Confidence 3448888888888899998888877777655444455554333222110 00
Q ss_pred cCCchhhhhHhHhhhhcccCCCCCccc--ccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhhhccc
Q 018552 179 HTDDFRCLDKAALELKEDVINPSPWKL--CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 251 (354)
Q Consensus 179 ~~~~~~~l~~a~~~~~~~~~~~~~~~~--~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~md~~ 251 (354)
.....++ ...|-. ....++++++...++++++...+++|+.+.|.....+.|+.++++.
T Consensus 211 ~~~~~~~--------------~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m 271 (654)
T TIGR00926 211 STRSEHW--------------PLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRM 271 (654)
T ss_pred ccCCccc--------------chhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Confidence 0000000 011211 1333356789999999999999999999999999999999999864
No 10
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.36 E-value=3.1e-05 Score=73.72 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.+.++++..+.+++.|...|...++..|.++++ +|.+.++++..+.++|.++++.+.+++.+..||++.|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6777888889999999999999999999999753 3788999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 018552 108 AIAMGISNMLFF 119 (354)
Q Consensus 108 ~v~m~ial~~f~ 119 (354)
++..+++.+..+
T Consensus 165 ~~~~~~~~~~~~ 176 (365)
T TIGR00900 165 AVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHH
Confidence 887776655443
No 11
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.25 E-value=7.1e-05 Score=71.56 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.+.++++..+.++|.|..-|...+++.|.++++ +|...++++....++|.++++.+.+++.++.||++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 5677888888999999999999999999998642 3678899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 018552 108 AIAMGISNMLFF 119 (354)
Q Consensus 108 ~v~m~ial~~f~ 119 (354)
++..++..+..+
T Consensus 155 ~~~~~~~~~~~~ 166 (399)
T TIGR00893 155 GVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHhh
Confidence 877665555443
No 12
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.15 E-value=3.5e-05 Score=73.05 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.+.++++..+.++|.|...|...++..|.+++++ |...++++..+.++|.++++.+.+++.+++||++.|.+.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 34578888999999999999999999999999743 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++..+++.++
T Consensus 158 ~~~~~~~~il 167 (352)
T PF07690_consen 158 AILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHH
T ss_pred cchhhhhhhh
Confidence 9999888774
No 13
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.12 E-value=0.00011 Score=72.39 Aligned_cols=83 Identities=13% Similarity=0.269 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.+.++++..+.++|.|.+.|...+...|.++++ ++...+++++...++|..+++.+.+++. .+||++.|.+.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 4667788888889999999999999999888642 3778999999999999999999999998 78999999998
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++..+++.+.
T Consensus 171 ~~~~~~~~i~ 180 (400)
T PRK11646 171 AVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHH
Confidence 8776665443
No 14
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.09 E-value=0.00032 Score=69.16 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
....+++...+.+++.|..-+...+...|.++++ ++.+..++++++.++|..+++.+.+++.+..||++.|.+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 3455666666677788888888888888887642 3567788999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 018552 108 AIAMGISNMLFF 119 (354)
Q Consensus 108 ~v~m~ial~~f~ 119 (354)
++..+++.+..+
T Consensus 183 ~~~~~~~~~~~~ 194 (417)
T PRK10489 183 AAGTFITLLPLL 194 (417)
T ss_pred HHHHHHHHHHHH
Confidence 888776655443
No 15
>TIGR00895 2A0115 benzoate transport.
Probab=98.05 E-value=0.00038 Score=66.99 Aligned_cols=84 Identities=20% Similarity=0.327 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.++|.|..-+...++..|.++++ +|...++++..+.++|..+++.+.+++.++.||+..|.+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 4566778888899999999999999999998642 3678899999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++..++..++
T Consensus 178 ~~~~~~~~~~ 187 (398)
T TIGR00895 178 GIAPLLLLLL 187 (398)
T ss_pred hhHHHHHHHH
Confidence 6554444443
No 16
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.98 E-value=0.00024 Score=69.56 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...+.++..+.++|.|..-|...++..|.++++ +|...+++++.+.++|.++++.+..++.+..+|+..|.+.
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 4566777778889999999999999999999643 3678899999999999999999988898999999999998
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++..++..+.
T Consensus 176 ~~~~~~~~~~ 185 (406)
T PRK11551 176 GVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHH
Confidence 7765554443
No 17
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.95 E-value=0.00054 Score=69.61 Aligned_cols=87 Identities=17% Similarity=0.070 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+...++++-.+.++|.|++-|.....+.+.+.+++ +|..+++++....++|..+++.+.+++.++.||++.|.+
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 356778888889999999999988888888875422 477899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 018552 107 LAIAMGISNMLF 118 (354)
Q Consensus 107 ~~v~m~ial~~f 118 (354)
.....++.++..
T Consensus 167 ~~~~~~~~~~l~ 178 (495)
T PRK14995 167 NVPIVLVVMGLT 178 (495)
T ss_pred HHHHHHHHHHHH
Confidence 776655554443
No 18
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.93 E-value=0.00048 Score=64.82 Aligned_cols=88 Identities=20% Similarity=0.330 Sum_probs=76.4
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+...++++..+.+++.|...+...++..|.++++ +|...+++++.+.++|..+++.+.+++.++.+|+..|.+
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34667788888899999999999999999999863 267899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 018552 107 LAIAMGISNMLFFI 120 (354)
Q Consensus 107 ~~v~m~ial~~f~~ 120 (354)
.++..+++.+....
T Consensus 159 ~~~~~~~~~~~~~~ 172 (352)
T cd06174 159 LAILGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877665543
No 19
>PRK03545 putative arabinose transporter; Provisional
Probab=97.87 E-value=0.0013 Score=64.31 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.++|.|.+-|...++..|.++++ +|...++++..+.++|..+++.+.+++.+++||++.|.+.
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 169 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI 169 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence 4566777777888888888899999999999743 3678899999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++..++..+.
T Consensus 170 ~~~~~l~~~~ 179 (390)
T PRK03545 170 GGGALITLLL 179 (390)
T ss_pred HHHHHHHHHH
Confidence 8776655443
No 20
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.85 E-value=0.00056 Score=76.38 Aligned_cols=84 Identities=11% Similarity=0.084 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+.+.++++..+.++|++.+.|...+++.|.+++++ +..+.+++.++.++|.++++.+.+++.+..||+..|.+
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 357788999999999999999999999999998643 67899999999999999999999999999999999955
Q ss_pred HHHHHHHHHH
Q 018552 107 LAIAMGISNM 116 (354)
Q Consensus 107 ~~v~m~ial~ 116 (354)
.++..+++++
T Consensus 180 ~~~~~~~~~~ 189 (1140)
T PRK06814 180 LMGIAVLGWL 189 (1140)
T ss_pred HHHHHHHHHH
Confidence 5444443333
No 21
>PRK10054 putative transporter; Provisional
Probab=97.83 E-value=0.00074 Score=66.51 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
...++++..++..+.+.+.|...+...|.++++ ++.+.++++|...|+|..+++.+.+++.+ .||+..|.+++
T Consensus 96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~ 168 (395)
T PRK10054 96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA 168 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence 334444445556666777888888888888633 36789999999999999999999999875 79999999998
Q ss_pred HHHHHHHHH
Q 018552 109 IAMGISNML 117 (354)
Q Consensus 109 v~m~ial~~ 117 (354)
+..+++++.
T Consensus 169 ~~~~i~~i~ 177 (395)
T PRK10054 169 ICSAFPLVF 177 (395)
T ss_pred HHHHHHHHH
Confidence 887776543
No 22
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.81 E-value=0.00091 Score=66.91 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...+.++..+.++|.|+..|...+++.|.++++ +|..++.+++.+.++|..+++.+.+++.+++||++.|.+.
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 4667778888889999999999999999999732 3678899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 018552 108 AIAMGISNMLF 118 (354)
Q Consensus 108 ~v~m~ial~~f 118 (354)
++..+++++..
T Consensus 163 ~~~~~~~~~~~ 173 (485)
T TIGR00711 163 VPIGIIVVVVA 173 (485)
T ss_pred hHHHHHHHHHH
Confidence 76665555443
No 23
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.74 E-value=0.002 Score=66.20 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 018552 26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 105 (354)
Q Consensus 26 ~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~ 105 (354)
..+.+.+++...++++|+....|.-.+++.+..++++ +.++-++.-...|+.-++||.+.+.+-...|-.+.|.
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ 173 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL 173 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3467778888889999999999999999999998654 6678889999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 018552 106 ALAIAMGISNMLFFIG 121 (354)
Q Consensus 106 i~~v~m~ial~~f~~g 121 (354)
+.+++.+++++.+..-
T Consensus 174 inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 174 INALSFLISILALLRW 189 (524)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999988776655443
No 24
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.73 E-value=0.0052 Score=59.14 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.++|.|..-+...++..|.++++ +|...+++++...++|..+++.+.+++.+..||+..|.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4566777788889999999999999999998743 3678899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 018552 108 AIAMGISNMLFFI 120 (354)
Q Consensus 108 ~v~m~ial~~f~~ 120 (354)
++..++..+..+.
T Consensus 166 ~~~~~~~~~~~~~ 178 (385)
T TIGR00710 166 SLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 8777666655444
No 25
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.72 E-value=5.1e-06 Score=82.22 Aligned_cols=88 Identities=22% Similarity=0.361 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFG 105 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~ 105 (354)
.+.+.+.+.-.++++|....-|-..++++|.|+++ +|.+.|.||||+|++|+.+|..+..++.+.-+ |+++|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 45667777778899999999999999999999864 38999999999999999999998889988776 999999
Q ss_pred HHHHHHHHHHH-HHHh
Q 018552 106 ALAIAMGISNM-LFFI 120 (354)
Q Consensus 106 i~~v~m~ial~-~f~~ 120 (354)
+.++.+++..+ +|+.
T Consensus 193 ~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFLF 208 (493)
T ss_pred eehHHHHHHHHHHHhh
Confidence 98888776544 4444
No 26
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.72 E-value=0.0035 Score=61.49 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.+++.|..-+...+...|.+++++ +.+..++.+...++|..+++.+.+++.++.||++.|.+.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 34566777777888888888888899999987532 446677888888899999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 018552 108 AIAMGISNMLF 118 (354)
Q Consensus 108 ~v~m~ial~~f 118 (354)
++..+++.+..
T Consensus 174 ~~~~~~~~~~~ 184 (406)
T PRK15402 174 AALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHH
Confidence 88777665543
No 27
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.70 E-value=0.0027 Score=61.95 Aligned_cols=82 Identities=7% Similarity=0.023 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+.+.++++..+.+.+.+..-|...++..+ ++ +++...+.+.....++|..+++.+.+++.+++||+..|.+
T Consensus 92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~-------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 92 HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQ-------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HH-------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 346667777777777777777777776533 32 1245678999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 018552 107 LAIAMGISNM 116 (354)
Q Consensus 107 ~~v~m~ial~ 116 (354)
..+...+.++
T Consensus 164 ~~~~~~~~~~ 173 (382)
T TIGR00902 164 LTAGLAFMLI 173 (382)
T ss_pred HHHHHHHHHH
Confidence 7765443333
No 28
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.66 E-value=0.0026 Score=61.11 Aligned_cols=86 Identities=12% Similarity=0.188 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-------- 99 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-------- 99 (354)
+...++.-..+.+++.+...+...+++.|.++++ +|..+.++...+.++|.++++.+..++.++.|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 4444554445566777888899999999999643 36778899999999999999999988888888
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 018552 100 WGSAFGALAIAMGISNMLFF 119 (354)
Q Consensus 100 ~~~gF~i~~v~m~ial~~f~ 119 (354)
|+..|.+.++..++++++.+
T Consensus 156 wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 99999999988777665433
No 29
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.66 E-value=0.0018 Score=63.45 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++-.+.++|.|.. ++..+..+|.++++ +|....+++..+.++|..+++++.+++.+++||+..|.+.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 5667788888888998864 45555567877632 3788899999999999999999999999999999999885
Q ss_pred HHHHHHH
Q 018552 108 AIAMGIS 114 (354)
Q Consensus 108 ~v~m~ia 114 (354)
++.-++.
T Consensus 151 ~~l~~~~ 157 (368)
T TIGR00903 151 AAVAAAG 157 (368)
T ss_pred HHHHHHH
Confidence 5544333
No 30
>PRK10504 putative transporter; Provisional
Probab=97.65 E-value=0.0037 Score=62.56 Aligned_cols=87 Identities=15% Similarity=0.081 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.++|.|..-|...+.+.|.++++ ++...+.++....++|..+++.+.+++.++.||++.|.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 4566777888999999999999999999988632 3567889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 018552 108 AIAMGISNMLFFI 120 (354)
Q Consensus 108 ~v~m~ial~~f~~ 120 (354)
.....++.+....
T Consensus 171 ~~~~~l~~~~~~~ 183 (471)
T PRK10504 171 IPVGIIGAIATLM 183 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 7766655554443
No 31
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.64 E-value=0.0026 Score=60.61 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhhhchHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~-~~~~~i~~~~g~~~gF~i 106 (354)
+.+.++++..+.++|.|..-|...++..|.+++++ |...++++..+.++|..+++ ++...+.+..||++.|.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 56677788888899999999999999999997532 56778888999999999998 567778888999999998
Q ss_pred HHHHHHHHHHHHH
Q 018552 107 LAIAMGISNMLFF 119 (354)
Q Consensus 107 ~~v~m~ial~~f~ 119 (354)
.++..++..+..+
T Consensus 156 ~~~~~~~~~~~~~ 168 (379)
T TIGR00881 156 PGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHh
Confidence 8876665444433
No 32
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.63 E-value=0.0039 Score=60.28 Aligned_cols=83 Identities=13% Similarity=0.247 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--hHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFG 105 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g--~~~gF~ 105 (354)
+...++++..+.++|.|+.-+...++..|.++++ +|....+++..+.++|..+++.+.+.+.+..| |++.|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 4666778888899999999999999999999753 26788999999999999999999998888776 999998
Q ss_pred HHHHHHHHHHH
Q 018552 106 ALAIAMGISNM 116 (354)
Q Consensus 106 i~~v~m~ial~ 116 (354)
+.++..++.++
T Consensus 173 ~~~~~~~~~~~ 183 (405)
T TIGR00891 173 ISILPIIFALW 183 (405)
T ss_pred HHHHHHHHHHH
Confidence 87665554443
No 33
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.63 E-value=0.0028 Score=61.84 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.+.++++..+.+++.+. -|...+...|+++++ +|....+++..+.++|.++++.+.+++.+..||+..|.+.
T Consensus 106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 455666666777777554 476777888887532 3567788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018552 108 AIAMGISNMLF 118 (354)
Q Consensus 108 ~v~m~ial~~f 118 (354)
++..+++.+..
T Consensus 179 ~~~~~~~~~~~ 189 (408)
T PRK09874 179 ASVLFLCFLVT 189 (408)
T ss_pred HHHHHHHHHHH
Confidence 88776665543
No 34
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.61 E-value=0.0015 Score=64.33 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++-.+.++|.|+.-+...++..|.++++ +|....+++..+.++|.++++.+.+++.+.+||++.|.++
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 5667788888899999999999999999998743 2567788899999999999999999999999999999986
Q ss_pred HHHHH
Q 018552 108 AIAMG 112 (354)
Q Consensus 108 ~v~m~ 112 (354)
.+..+
T Consensus 179 ~~~~~ 183 (426)
T PRK12307 179 LLPVL 183 (426)
T ss_pred HHHHH
Confidence 55443
No 35
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.50 E-value=0.0067 Score=59.63 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHhhhchHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWGSAF 104 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~---~~i~~~~g~~~gF 104 (354)
+.+.++++..+.++|.|..-+...++.+|.+++++ |....++++++.++|.++++.+. ..+.+..||++.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 34578888899999999999999999999997543 57788999999999999999988 6666788999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018552 105 GALAIAMGISNMLFF 119 (354)
Q Consensus 105 ~i~~v~m~ial~~f~ 119 (354)
.++++..++.++..+
T Consensus 200 ~~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 200 GLQLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHHHHHHh
Confidence 997776666554443
No 36
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.50 E-value=0.0078 Score=58.68 Aligned_cols=82 Identities=7% Similarity=0.051 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+.+.+++...+.+++.+...|-..+...|. ++ ++...+++..+..++|..+++.+.+++.+++||+..|.+
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~-------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QK-------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh-------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 3466666777778888888988877777764 21 134557777888899999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 018552 107 LAIAMGISNM 116 (354)
Q Consensus 107 ~~v~m~ial~ 116 (354)
.++..++..+
T Consensus 164 ~~~~~~~~~~ 173 (382)
T PRK11128 164 LTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHH
Confidence 8876555443
No 37
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.45 E-value=0.0044 Score=62.68 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=68.4
Q ss_pred HHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 018552 34 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 113 (354)
Q Consensus 34 ~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~i 113 (354)
+.+.+++++.+......-++..|+.+ ++++ ......++.|.+.++|.+++..+.+++.+.+||+..|.+.++.+++
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll 200 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLL 200 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 46778999999999999999999998 3332 3456788999999999999999999999999999999999888877
Q ss_pred HHHHH
Q 018552 114 SNMLF 118 (354)
Q Consensus 114 al~~f 118 (354)
..+..
T Consensus 201 ~~~~~ 205 (468)
T TIGR00788 201 QLFVS 205 (468)
T ss_pred HHHHH
Confidence 74433
No 38
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.43 E-value=0.0093 Score=59.72 Aligned_cols=83 Identities=12% Similarity=0.227 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGAL 107 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~-g~~~gF~i~ 107 (354)
...+++.-.+.++|.|..-|.......|-++++ +|..+..+++.+.++|..+++.+.+++.+.. ||+..|.+.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 445666777889999999999999999988743 3678999999999999999999999999884 999999998
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++..++..+.
T Consensus 205 ~~~~~~~~~~ 214 (465)
T TIGR00894 205 GIVGCAWSLL 214 (465)
T ss_pred hHHHHHHHHH
Confidence 8876554443
No 39
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.41 E-value=0.012 Score=57.39 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
...++++-.+.++|.|..-++..+...|.+++++ |....+++..+.++|..+++.+.+++.+.+||+..|.+++
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 185 (399)
T PRK05122 112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM 185 (399)
T ss_pred HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4456667778889999999999999999986543 5677888889999999999999999999999999888876
Q ss_pred HHHHH
Q 018552 109 IAMGI 113 (354)
Q Consensus 109 v~m~i 113 (354)
+..++
T Consensus 186 ~~~~~ 190 (399)
T PRK05122 186 LLALL 190 (399)
T ss_pred HHHHH
Confidence 65443
No 40
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.39 E-value=0.018 Score=56.17 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.++|.|..-+...++..|.++++ +|...+++++...++|..+++.+..++.+..||+..|.+.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 3455666777788888888888889999998743 3678889999999999999999988888889999999998
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++..++..+.
T Consensus 164 ~~~~~i~~~~ 173 (392)
T PRK10473 164 AAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHH
Confidence 8776655544
No 41
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.38 E-value=0.0007 Score=66.14 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
...++++..+.++|.|..-|.......|.+++ +++.+.+++++...++|..+++.+.+++.+..||+..|.+.+
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPP------QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 34556667778888888778777777765542 247789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccceeecCC
Q 018552 109 IAMGISNMLFFIGTPLYRHRLP 130 (354)
Q Consensus 109 v~m~ial~~f~~g~~~y~~~~p 130 (354)
+..+++++..+..+++.++..|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T PRK05122 376 LAALLGLALTWLLYRRAPRAVP 397 (399)
T ss_pred HHHHHHHHHHHHhcccccccCC
Confidence 9888888776655555544444
No 42
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.37 E-value=0.018 Score=56.08 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.++|.|...+....+..|.++++ ++....+++..+..+|.++++.+.+++.+..||+..|.+.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 4556677777788888887787778888877642 2567788888899999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 018552 108 AIAMGISNM 116 (354)
Q Consensus 108 ~v~m~ial~ 116 (354)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 766554433
No 43
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.31 E-value=0.0012 Score=53.39 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...+++...+.+++.|..-+...+...|.+++++ +....++++...++|..+++.+.+++.+..||+..|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 34556667778888889889999999999997543 578899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 018552 108 AIAMGISNMLFFI 120 (354)
Q Consensus 108 ~v~m~ial~~f~~ 120 (354)
++..+++.+....
T Consensus 124 ~~~~~~~~~~~~~ 136 (141)
T TIGR00880 124 AILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHHHhh
Confidence 8777766655443
No 44
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.31 E-value=0.015 Score=64.85 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 97 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~ 97 (354)
+.+.++++..+.+++.|.+-|...++++|.+++++ |..+++++..+.++|.++++.+.+++.+.
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777888888999999999999999999997543 67889999999999999999999988765
No 45
>TIGR00898 2A0119 cation transport protein.
Probab=97.30 E-value=0.02 Score=57.78 Aligned_cols=82 Identities=11% Similarity=0.152 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.++|.|+.-+...++..|.+++++ |.....++.++.++|.++++.+...+.+ |++.|.+.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 45667777888999999999999999999997543 5566777788889999988887666654 99999988
Q ss_pred HHHHHHHHHHH
Q 018552 108 AIAMGISNMLF 118 (354)
Q Consensus 108 ~v~m~ial~~f 118 (354)
++..++..+..
T Consensus 250 ~i~~~~~~~~~ 260 (505)
T TIGR00898 250 SLPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHHHH
Confidence 87776655544
No 46
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.26 E-value=0.0088 Score=56.91 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.++|.|..-+...+...+.+++ +|.....++..+.++|++++..+...+.+.+||++.|.+.
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 456677777788888888777777777777752 2567788999999999988766677777788999999998
Q ss_pred HHHHHHHHHHH
Q 018552 108 AIAMGISNMLF 118 (354)
Q Consensus 108 ~v~m~ial~~f 118 (354)
++..++..+..
T Consensus 163 ~~~~~~~~~~~ 173 (377)
T TIGR00890 163 GIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHHH
Confidence 87766655443
No 47
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.26 E-value=0.0089 Score=60.07 Aligned_cols=85 Identities=18% Similarity=0.087 Sum_probs=62.8
Q ss_pred HHHHHHHH-HHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 29 MLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 29 ~~~~~~gL-~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
...++++. .+.++|.|..-+-..+...+-|+ + +|.....+++.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~--~-----~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY--R-----RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH--h-----hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 34444433 45577777654444466677663 1 2678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 018552 108 AIAMGISNMLFFI 120 (354)
Q Consensus 108 ~v~m~ial~~f~~ 120 (354)
++..+++.+..++
T Consensus 180 ~~~~~~~~v~~~~ 192 (455)
T TIGR00892 180 GGLLLHCCVCGAL 192 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 9887766654443
No 48
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.21 E-value=0.028 Score=53.91 Aligned_cols=87 Identities=13% Similarity=0.233 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
...+++.-.+++.+.+..-|...++..|..++++. .+.....+...+.++|..+++.+.+++.+.+||++.|.+.+
T Consensus 87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~ 162 (375)
T TIGR00899 87 YFLLLVLGVLLSSFASTANPQLFALAREHADRTGR----EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA 162 (375)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcch----hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence 34444444445555556667666776666543211 12223677788899999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 018552 109 IAMGISNMLFF 119 (354)
Q Consensus 109 v~m~ial~~f~ 119 (354)
+..++..+..+
T Consensus 163 ~~~~~~~~~~~ 173 (375)
T TIGR00899 163 LAFVLCGVLVW 173 (375)
T ss_pred HHHHHHHHHHH
Confidence 87766655433
No 49
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.19 E-value=0.021 Score=55.94 Aligned_cols=69 Identities=13% Similarity=0.256 Sum_probs=49.3
Q ss_pred CcccchhhhhhhcCCCCCcchhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 018552 45 GIRPCVSSFGADQFDERSKDYKTHLDRFF-NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 118 (354)
Q Consensus 45 ~~K~nv~~~~~dqy~~~d~~~~~~~~s~F-~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f 118 (354)
..-|....+..|..++++ +....+ ++...+.++|..+++.+.+++.+++||+..|.+.++..++..+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 190 (393)
T PRK15011 121 TANPQMFALAREHADKTG-----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMV 190 (393)
T ss_pred hhHHHHHHHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 445666666666554321 112233 588889999999999999999999999999999887665554443
No 50
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.14 E-value=0.019 Score=55.02 Aligned_cols=82 Identities=22% Similarity=0.282 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhhchH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWG 101 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~--------~~~g~~ 101 (354)
..++++..+.++|.|..-+...+++.|.+++++ |....+++..+.++|.++++++...+. +.+||+
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 356777788889999999999999999887432 567888899999999999988766554 357999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018552 102 SAFGALAIAMGISNML 117 (354)
Q Consensus 102 ~gF~i~~v~m~ial~~ 117 (354)
+.|.+.++..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 171 IPFLVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887766655443
No 51
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.14 E-value=0.0035 Score=60.51 Aligned_cols=85 Identities=20% Similarity=0.357 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.+++.|...+...++..|.++++ +|...+++++...++|..+++.+.+++.+..||++.|.+.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 3456677778888999999999999999998643 2678899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 018552 108 AIAMGISNMLF 118 (354)
Q Consensus 108 ~v~m~ial~~f 118 (354)
++..++..+..
T Consensus 152 ~~~~~~~~~~~ 162 (377)
T PRK11102 152 ALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHH
Confidence 77766655443
No 52
>PRK12382 putative transporter; Provisional
Probab=97.12 E-value=0.028 Score=54.78 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++-.+.++|.+..-|...+.+.|.++++ +|...++++..+.++|..+++.+.+++.+.+||+..+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 4566777778888999988888888888888643 2677888999999999999999999999999999877765
Q ss_pred HHH
Q 018552 108 AIA 110 (354)
Q Consensus 108 ~v~ 110 (354)
.+.
T Consensus 185 ~~~ 187 (392)
T PRK12382 185 MVL 187 (392)
T ss_pred HHH
Confidence 544
No 53
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.11 E-value=0.004 Score=61.69 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++-.+.++|.|..-+.......|.|++++ +.+..+++..+.++|..+++.+.+++.+..||++.|.+.
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 46677778888888888766666677888887532 567799999999999999999999999989999999998
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++..+++.+.
T Consensus 177 ~~~~~i~~~~ 186 (413)
T PRK15403 177 AVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHH
Confidence 8877766654
No 54
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.06 E-value=0.047 Score=53.57 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFG 105 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~-~g~~~gF~ 105 (354)
.+.+.+++...+.++......|...++..|.+++++ |.++..+..++.++|.+++..+..++.+. .||+..|.
T Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 92 AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 345555555556677788899999999999986532 56778888889999999998888888876 59999999
Q ss_pred HHHHHHHHHHHHH
Q 018552 106 ALAIAMGISNMLF 118 (354)
Q Consensus 106 i~~v~m~ial~~f 118 (354)
+.++..++..+..
T Consensus 166 i~a~~~l~~~l~~ 178 (402)
T PRK11902 166 LMAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHHH
Confidence 9888776655543
No 55
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.04 E-value=0.045 Score=53.72 Aligned_cols=84 Identities=12% Similarity=0.213 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~-g~~~gF~i 106 (354)
+...++++-.+.++|.|..-+.....+.|.|++ +|.....++..+.++|..++..+.+++.+++ ||+..|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 455677788889999999999999999988852 1457788888899999999999999998886 89988876
Q ss_pred HHHHHHHHHHHH
Q 018552 107 LAIAMGISNMLF 118 (354)
Q Consensus 107 ~~v~m~ial~~f 118 (354)
-++..++.+..+
T Consensus 169 ~~~~~~~~~~~~ 180 (393)
T PRK09705 169 WALPAVVALFAW 180 (393)
T ss_pred HHHHHHHHHHHH
Confidence 555444444333
No 56
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.99 E-value=0.083 Score=51.91 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 018552 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 112 (354)
Q Consensus 33 ~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ 112 (354)
++...+.++|.|++-|...+++.|.++++ ++.++.++.....++|.++++.+.+++.+. .|...|.+.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45556789999999999999999999853 377889999999999999999999998875 48788877766555
Q ss_pred HHHH
Q 018552 113 ISNM 116 (354)
Q Consensus 113 ial~ 116 (354)
++.+
T Consensus 165 ~~~~ 168 (393)
T PRK11195 165 LAAL 168 (393)
T ss_pred HHHH
Confidence 4433
No 57
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=96.97 E-value=0.0032 Score=61.96 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+.+.+++.-.+.+++.|..-|...++..|.++++ ++.....++..+.|+|.++++.+.+++.+..||++.|.+
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 45677888888899999999999999999999643 367889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 018552 107 LAIAMGISNM 116 (354)
Q Consensus 107 ~~v~m~ial~ 116 (354)
.++..++.++
T Consensus 180 ~~~l~~~~~l 189 (394)
T PRK10213 180 AAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHH
Confidence 8765554443
No 58
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.92 E-value=0.069 Score=54.33 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFG 105 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~-~~g~~~gF~ 105 (354)
.+...+++...+.+++.+...+...++..|.+++++ |..+..+.-++.++|.++++.+..++.+ ..||+..|.
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 456677777778888899999999999999987432 5677788889999999999999999988 579999999
Q ss_pred HHHHHHHHHHHHH
Q 018552 106 ALAIAMGISNMLF 118 (354)
Q Consensus 106 i~~v~m~ial~~f 118 (354)
+.++.+++..+..
T Consensus 179 i~a~l~ll~~l~~ 191 (491)
T PRK11010 179 LMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 9888776665543
No 59
>PRK12382 putative transporter; Provisional
Probab=96.89 E-value=0.0039 Score=60.80 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
...++++..+.++|.|..-|...+...|.++++ ++.+.+++++...++|..+++.+.+++.+++||+..|.+.+
T Consensus 302 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~ 375 (392)
T PRK12382 302 AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ------VRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGA 375 (392)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 345566677778888887888777788777532 36789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 018552 109 IAMGISNMLFFI 120 (354)
Q Consensus 109 v~m~ial~~f~~ 120 (354)
+..++++++.+.
T Consensus 376 ~~~~~~~~~~~~ 387 (392)
T PRK12382 376 ISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHh
Confidence 988888877654
No 60
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.86 E-value=0.12 Score=49.47 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--hHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFG 105 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g--~~~gF~ 105 (354)
+...++++..+.++|.|...+...+...|.+++ ++....+++..+.++|..+++.+.+++.+..+ |+..|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 455667777888899998888888888887742 25678889999999999999998888877653 999998
Q ss_pred HHHHHHHHHHH
Q 018552 106 ALAIAMGISNM 116 (354)
Q Consensus 106 i~~v~m~ial~ 116 (354)
+.++..++++.
T Consensus 159 ~~~~~~~~~~~ 169 (355)
T TIGR00896 159 WWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHH
Confidence 77665554443
No 61
>PRK11663 regulatory protein UhpC; Provisional
Probab=96.80 E-value=0.0061 Score=60.66 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...+++...+.+++.|..-+...++..|.|+++ +|....++++.+.++|+.+++.+.+++.+.+||++.|.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3445555556677888888888999999999743 3678899999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 018552 108 AIAMGIS 114 (354)
Q Consensus 108 ~v~m~ia 114 (354)
++..++.
T Consensus 184 ~i~~~~~ 190 (434)
T PRK11663 184 GIIAIVV 190 (434)
T ss_pred HHHHHHH
Confidence 7665443
No 62
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=96.77 E-value=0.004 Score=60.68 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
...+++...+.+++.|.+.|...+...+..+++ ++.+.+++++...++|..+++.+.+++.++.||+..|.+.+
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~ 384 (408)
T PRK09874 311 PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTA 384 (408)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHH
Confidence 455666677788889998888888876655432 35788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 018552 109 IAMGISNMLFFIG 121 (354)
Q Consensus 109 v~m~ial~~f~~g 121 (354)
+..+++.+..+..
T Consensus 385 ~~~l~~~~~~~~~ 397 (408)
T PRK09874 385 GVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHHHHH
Confidence 9888877765443
No 63
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.69 E-value=0.0083 Score=63.15 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---------
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--------- 98 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~--------- 98 (354)
...+++++-.+.++|.|.+-+...+++.|-+++++ +..++++++.+.++|..+++++.+++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 35677889999999999999999999999987543 578899999999999999999998887643
Q ss_pred -------------chHHHHHHHHHHHHHHHHHHH
Q 018552 99 -------------GWGSAFGALAIAMGISNMLFF 119 (354)
Q Consensus 99 -------------g~~~gF~i~~v~m~ial~~f~ 119 (354)
+|+.+|.+.++..++..+.++
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 289999998877766554443
No 64
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.65 E-value=0.11 Score=51.13 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hhhchHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-------MEHGWGS 102 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~-------~~~g~~~ 102 (354)
..+++...+..++.+.+.....++..|..++ ++ +|.+..++-..+.++|++++..+.+.+. +..||+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~---~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~ 174 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLD--PR---ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFM 174 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHH
Confidence 3334444555667777777777888887653 32 3667788888889999887766554443 3468999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 018552 103 AFGALAIAMGISNMLFFI 120 (354)
Q Consensus 103 gF~i~~v~m~ial~~f~~ 120 (354)
.|.+.++...+..++...
T Consensus 175 ~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 175 FALVLALIGVVSLIICFF 192 (437)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 888888776665554433
No 65
>PRK10091 MFS transport protein AraJ; Provisional
Probab=96.56 E-value=0.0086 Score=58.39 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+.+.++++..+.++|.|..-+....+..|.++++ ++...++++..+.++|..+++.+.+++.+..||++.|.+
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 35677888888889999988888888888877643 255678888899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018552 107 LAIAMGISNML 117 (354)
Q Consensus 107 ~~v~m~ial~~ 117 (354)
.++..++..+.
T Consensus 163 ~~~~~~~~~~~ 173 (382)
T PRK10091 163 IAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHH
Confidence 88876655543
No 66
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.56 E-value=0.092 Score=51.05 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 105 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~ 105 (354)
+...++++..+.++|.|++.|...+...|.++++ +|.+.+++++.+.|+|..+++.+.+++.+...+...+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 164 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV 164 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 4667777888889999998888877777776532 36788999999999999999999999877654444433
No 67
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=96.48 E-value=0.39 Score=47.52 Aligned_cols=91 Identities=14% Similarity=0.259 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+...+.++=.+.++..|.|-+-..+..+|.-++++ |.++-..-+.+..+.-.++.=+..+|.|.+||+..|.+
T Consensus 99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ 172 (394)
T COG2814 99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence 457788888899999999999999999999998653 67888888999999888888788999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q 018552 107 LAIAMGISNMLFFIGTP 123 (354)
Q Consensus 107 ~~v~m~ial~~f~~g~~ 123 (354)
-++.-+++++..+..-+
T Consensus 173 ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 173 IAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 87777666665554434
No 68
>PRK11043 putative transporter; Provisional
Probab=96.45 E-value=0.012 Score=57.51 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.++|.|..-+...++..|.|++++ +.+.++......++|..+++.+.+++.+++||+..|.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 45566677777788888877888888899887432 456788888889999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 018552 108 AIAMGISNMLFF 119 (354)
Q Consensus 108 ~v~m~ial~~f~ 119 (354)
++..++..+..+
T Consensus 167 ~~~~~~~~~~~~ 178 (401)
T PRK11043 167 FAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHH
Confidence 877766555433
No 69
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.43 E-value=0.0097 Score=56.60 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 018552 32 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 111 (354)
Q Consensus 32 ~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m 111 (354)
++....+..++.|..-+...++..|.+++++ +.+.+.+++...++|..+++.+.+++.++.||+..|.++++..
T Consensus 298 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~ 371 (377)
T TIGR00890 298 FLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA 371 (377)
T ss_pred HHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 4445566777778777777888888887443 6788999999999999999999999999999999999998888
Q ss_pred HHHHH
Q 018552 112 GISNM 116 (354)
Q Consensus 112 ~ial~ 116 (354)
+++++
T Consensus 372 ~~~~~ 376 (377)
T TIGR00890 372 LTSLA 376 (377)
T ss_pred HHhcc
Confidence 77653
No 70
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=96.38 E-value=0.012 Score=55.11 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
...+++...+.+++.++..+...++..|.++++ ++...++.+....++|..+++.+.+++.++.||+..|.+.+
T Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~ 338 (352)
T cd06174 265 LALLLVALLLLGFGLGFAFPALLTLASELAPPE------ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA 338 (352)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHH
Confidence 566778888899999999999999999998752 37889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018552 109 IAMGISNMLFF 119 (354)
Q Consensus 109 v~m~ial~~f~ 119 (354)
+..+++.+.+.
T Consensus 339 ~~~~i~~i~~~ 349 (352)
T cd06174 339 ALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHhe
Confidence 99888877654
No 71
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.35 E-value=0.023 Score=56.62 Aligned_cols=83 Identities=13% Similarity=0.214 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhhchHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY-IQMEHGWGSAFGAL 107 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~-i~~~~g~~~gF~i~ 107 (354)
...+++...+.+++.|..-+.......|.+++++ |..++++++.+.++|..+++.+.+. +.++.||+.+|.+.
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~ 191 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP 191 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4556667778888899888888899999887543 6788999999999999988777665 55567999999998
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++..++..+.
T Consensus 192 ~~~~~i~~~~ 201 (438)
T TIGR00712 192 AICAIIVALF 201 (438)
T ss_pred HHHHHHHHHH
Confidence 8876665443
No 72
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.34 E-value=0.021 Score=56.73 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhhch
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGW 100 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~--------~~~g~ 100 (354)
...+.+.-.+.++|.|+.-|...++++|.+++++ |..+.++.+.+.+.|.++++.+...+. +.+||
T Consensus 124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 197 (432)
T PRK10406 124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence 3457777788999999999999999999997532 456788889999999998887665554 26899
Q ss_pred HHHHHHHHHHHHHH
Q 018552 101 GSAFGALAIAMGIS 114 (354)
Q Consensus 101 ~~gF~i~~v~m~ia 114 (354)
++.|.+.++..++.
T Consensus 198 r~~F~i~~~~~ll~ 211 (432)
T PRK10406 198 RIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999877755443
No 73
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=96.31 E-value=0.012 Score=58.37 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhh------hchH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWG 101 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY-~~iNiGslia~~~~~~i~~~------~g~~ 101 (354)
...++++..+.+++.|..-+....++.|.++++ .+.+.+++++ +..++|+.+++.+.+++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 455677778888888888899999999998743 3678899997 56789999999999999987 4699
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018552 102 SAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 102 ~gF~i~~v~m~ial~~f~~ 120 (354)
..|.++++..+++.+.++.
T Consensus 382 ~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999887776666555433
No 74
>PRK03893 putative sialic acid transporter; Provisional
Probab=96.18 E-value=0.014 Score=58.72 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.+.++++..+.+++.|+..+...++..|.++++ +|...+++++.+.++|.++++.+.+++.+++||++.|.+.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 4667788888899999999999999999999742 3677889999999999999999999999999999999886
Q ss_pred HHHHHH
Q 018552 108 AIAMGI 113 (354)
Q Consensus 108 ~v~m~i 113 (354)
++..++
T Consensus 181 ~~~~~~ 186 (496)
T PRK03893 181 ILPIIF 186 (496)
T ss_pred HHHHHH
Confidence 554443
No 75
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.12 E-value=0.019 Score=56.63 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
.....+++.+.++|.|...+...++..|..+++ .+.+.+++++...++|..+++.+.+++.+.+|+...|.+.+
T Consensus 312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~ 385 (417)
T PRK10489 312 WILAVLCLALFGYLSAISSLLQYTLLQTQTPDE------MLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASG 385 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHH
Confidence 344455566667777776677677777777632 36788999999999999999999999999999988888776
Q ss_pred HHHHHHHHHHHh
Q 018552 109 IAMGISNMLFFI 120 (354)
Q Consensus 109 v~m~ial~~f~~ 120 (354)
++..+..++...
T Consensus 386 ~~~~~~~~~~~~ 397 (417)
T PRK10489 386 FGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHHH
Confidence 665554444433
No 76
>PRK03699 putative transporter; Provisional
Probab=96.06 E-value=0.04 Score=53.92 Aligned_cols=85 Identities=6% Similarity=0.110 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhhchHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~-~~~g~~~gF~i 106 (354)
+...++++..+.+++.|..-+...+...|.++++ +|.......+...++|+.+++.+.+++. ++.||++.|.+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4566777788888999999999999999999642 2456677778888999999988888764 56799999998
Q ss_pred HHHHHHHHHHHH
Q 018552 107 LAIAMGISNMLF 118 (354)
Q Consensus 107 ~~v~m~ial~~f 118 (354)
.++..++..+..
T Consensus 168 ~~~~~~~~~~~~ 179 (394)
T PRK03699 168 IGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHH
Confidence 877666554433
No 77
>TIGR00893 2A0114 d-galactonate transporter.
Probab=95.99 E-value=0.028 Score=53.49 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=63.4
Q ss_pred HHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHH
Q 018552 35 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGI 113 (354)
Q Consensus 35 gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~i~~v~m~i 113 (354)
.+.++..+..+.-|...++..|.+++++ +...++++....++|+.+++.+.+++.+..| |...|.+.++..++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~ 390 (399)
T TIGR00893 317 ALVALGFFGLGAGAIGWALISDNAPGNI------AGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALI 390 (399)
T ss_pred HHHHHHHhchhhhhHHHHHHHhhcChhH------HHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHH
Confidence 3333444444478889999999887433 6788999999999999999999999999998 99999999888887
Q ss_pred HHHHHH
Q 018552 114 SNMLFF 119 (354)
Q Consensus 114 al~~f~ 119 (354)
+.+.++
T Consensus 391 ~~~~~~ 396 (399)
T TIGR00893 391 GALSYL 396 (399)
T ss_pred HHHHHH
Confidence 776654
No 78
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.94 E-value=0.34 Score=49.19 Aligned_cols=83 Identities=20% Similarity=0.357 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHH
Q 018552 32 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIA 110 (354)
Q Consensus 32 ~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~-~g~~~gF~i~~v~ 110 (354)
+.+.-.+.+++.|..-|++..+.+.=.++++ |..+.+..|.+..+|.++++-+.+++-+. .||...|.+.++.
T Consensus 131 ~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~ 204 (466)
T KOG2532|consen 131 LLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIV 204 (466)
T ss_pred hHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHH
Confidence 3444556677888888888888887776433 78999999999999999999999999988 9999999998877
Q ss_pred HHHHHHHHHh
Q 018552 111 MGISNMLFFI 120 (354)
Q Consensus 111 m~ial~~f~~ 120 (354)
-++-.+++..
T Consensus 205 g~i~~~~w~~ 214 (466)
T KOG2532|consen 205 GLIWFILWFL 214 (466)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 79
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=95.89 E-value=0.89 Score=44.55 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhchHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFG 105 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGs-lia~~~~~~i~~~~g~~~gF~ 105 (354)
+...+++...+.++|.+..-+...+...+.++++ +|....+++..+.++|. .+++.+.+++.+..||...+.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~ 176 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLW 176 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 3455555566667777776666667777776542 36788899999999996 578888888888888544433
No 80
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=95.89 E-value=0.031 Score=53.58 Aligned_cols=84 Identities=7% Similarity=0.014 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 109 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v 109 (354)
+.+++...+.+++.|..-|...+...|..++ ++.+.++++++..++|..+++.+.+++.+..||+..|.+.++
T Consensus 289 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~ 361 (375)
T TIGR00899 289 WALLMLQLLNAIFIGILAGIGMLYFQDLMPG-------RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIV 361 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 3344444555667777667666777776642 134889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 018552 110 AMGISNMLFFI 120 (354)
Q Consensus 110 ~m~ial~~f~~ 120 (354)
..+++.+..+.
T Consensus 362 ~~~~~~~~~~~ 372 (375)
T TIGR00899 362 MLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHhe
Confidence 88888776543
No 81
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=95.89 E-value=0.027 Score=55.69 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------hhchH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWG 101 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~------~~g~~ 101 (354)
+...++++-.+.++|.|+.-|....+..|-|+++ +|....+++..+.++|..+++.+.+++.+ ..||+
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 3567778888999999999898888899999742 36678889999999999999999888864 47999
Q ss_pred HHHHHHHHHHHHHHH
Q 018552 102 SAFGALAIAMGISNM 116 (354)
Q Consensus 102 ~gF~i~~v~m~ial~ 116 (354)
+.|.+.++..++..+
T Consensus 169 ~~f~~~~~~~l~~~~ 183 (412)
T TIGR02332 169 WLFLLEGFPSVILGV 183 (412)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999997766654433
No 82
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=95.89 E-value=0.052 Score=55.21 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--Hhhh---------
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--QMEH--------- 98 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i--~~~~--------- 98 (354)
..+.+++.++-+......+...++++|..++++. +...+++|+.+..|+|++++..+.+++ .+..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 4556666677778888888889999999987653 246789999999999999999877665 2211
Q ss_pred ----chHHHHHHHHHHHHHHHHHHHhcccce
Q 018552 99 ----GWGSAFGALAIAMGISNMLFFIGTPLY 125 (354)
Q Consensus 99 ----g~~~gF~i~~v~m~ial~~f~~g~~~y 125 (354)
+++..|.+.++.++++.++-...-|.+
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 678899999999998888766655544
No 83
>PRK03633 putative MFS family transporter protein; Provisional
Probab=95.87 E-value=0.033 Score=54.17 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 018552 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 112 (354)
Q Consensus 33 ~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ 112 (354)
+.++.+.+++.+..-|...+...|..++++ +.+....+..+-++|.++++.+.+++.|++||.+.|.+.+...+
T Consensus 289 ~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l 362 (381)
T PRK03633 289 APALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSF 362 (381)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 345556666666777888888887775432 34566777788899999999999999999999999999877776
Q ss_pred HHHH
Q 018552 113 ISNM 116 (354)
Q Consensus 113 ial~ 116 (354)
++.+
T Consensus 363 ~~~~ 366 (381)
T PRK03633 363 IYLL 366 (381)
T ss_pred HHHH
Confidence 5543
No 84
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.82 E-value=0.043 Score=52.36 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=68.9
Q ss_pred CcchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--------
Q 018552 25 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------- 96 (354)
Q Consensus 25 ~~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~-------- 96 (354)
...+...+.+++.+++.|.+...+...+++++.-++++ +.+..|+.-.+..+|++++|++...+-.
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~ 79 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM 79 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence 34578899999999999999999999999999987654 4566888888899999999999887652
Q ss_pred --------hhchHHHHHHHHHHHHHHHHHH
Q 018552 97 --------EHGWGSAFGALAIAMGISNMLF 118 (354)
Q Consensus 97 --------~~g~~~gF~i~~v~m~ial~~f 118 (354)
...|++.|.+-++...+..+++
T Consensus 80 ~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 80 QVATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1478999995554444433333
No 85
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=95.72 E-value=0.047 Score=54.57 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=66.5
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhh
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEH 98 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~--------~~~ 98 (354)
.....++++-.+.++|.|+.-|...++++|.++++. |.....++-.+..+|.++++.+..++. +.+
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD 191 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence 335567778888999999999999999999998532 566778888889999998877655443 457
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 018552 99 GWGSAFGALAIAMGISNML 117 (354)
Q Consensus 99 g~~~gF~i~~v~m~ial~~ 117 (354)
||++.|.+.++..++.++.
T Consensus 192 gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 192 GWRYMFASEAIPALLFLML 210 (479)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 9999999987777665543
No 86
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.02 Score=56.36 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=87.6
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+.++++++-.+=++|..+...+-.++.+|-|.+|.. |.+...+---++.+|.++|+-+-+.+-|..|+.+-|++
T Consensus 157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV 231 (464)
T KOG3764|consen 157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV 231 (464)
T ss_pred chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence 4566788888888999999999999999999997654 67778888888999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHhcccceeec--CCCCCchhHHHH
Q 018552 107 LAIAMGISNML-FFIGTPLYRHR--LPGGSPLTRVAQ 140 (354)
Q Consensus 107 ~~v~m~ial~~-f~~g~~~y~~~--~p~gspl~~~~~ 140 (354)
+++.+++..+. |+.-.++-.+. .+++.|+.++++
T Consensus 232 L~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll~ 268 (464)
T KOG3764|consen 232 LAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLLM 268 (464)
T ss_pred HHHHHHHHHHHHHheeCccccCccccccCccHHHHHh
Confidence 99998886554 55545432222 467778877654
No 87
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=95.51 E-value=0.017 Score=58.00 Aligned_cols=88 Identities=9% Similarity=0.066 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~-g~~~gF~i 106 (354)
+...+++...+.+++.|..-++..++..|.++++ ++...+.++....++|..+++.+.+++.+.. +|...|.+
T Consensus 332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~ 405 (455)
T TIGR00892 332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ------RFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA 405 (455)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH------HHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence 3455666777788899999999999999988643 3678899999999999999999999998887 59999999
Q ss_pred HHHHHHHHHHHHHhc
Q 018552 107 LAIAMGISNMLFFIG 121 (354)
Q Consensus 107 ~~v~m~ial~~f~~g 121 (354)
+++.++++.+..+.+
T Consensus 406 ~~~~~li~~~~~~~~ 420 (455)
T TIGR00892 406 SGSIVVSAGLFLAIG 420 (455)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999888776654443
No 88
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=95.36 E-value=0.085 Score=50.40 Aligned_cols=76 Identities=16% Similarity=0.068 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----------h
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------E 97 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~----------~ 97 (354)
+.+.++++-.+.++|.+.+ +...++.+|.+++++ |....+++....|+|..+++.+.+.+.+ .
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5566777777888887666 445778888886432 5677888888888888888777766654 2
Q ss_pred hchHHHH-HHHHHH
Q 018552 98 HGWGSAF-GALAIA 110 (354)
Q Consensus 98 ~g~~~gF-~i~~v~ 110 (354)
.+|++.| .+.++.
T Consensus 163 ~~w~~~~~~~~~~~ 176 (366)
T TIGR00886 163 LAWGWAFVIVPAGI 176 (366)
T ss_pred ccccchhHHHHHHH
Confidence 4899999 443333
No 89
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=95.35 E-value=0.088 Score=53.32 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhhchHH
Q 018552 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS 102 (354)
Q Consensus 31 ~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~--------~~~g~~~ 102 (354)
.+.++-.+.++|.|+.-|...++.+|.++++. |.....+...+.++|..++..+...+. .++||++
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 46677788899999999999999999997543 445667777788888887776554432 2689999
Q ss_pred HHHHHHHHHH
Q 018552 103 AFGALAIAMG 112 (354)
Q Consensus 103 gF~i~~v~m~ 112 (354)
.|.+.++..+
T Consensus 194 ~f~i~~~~~l 203 (490)
T PRK10642 194 PFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHH
Confidence 9999765433
No 90
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=95.33 E-value=0.09 Score=52.59 Aligned_cols=82 Identities=11% Similarity=0.199 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhchHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGs-lia~~~~~~i~~~~g~~~gF~i 106 (354)
+...+++...+.+++.|..-|.......|.++++ +|..+.++++.+.++|. +++++....+....||+++|.+
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 4556667777888889988888888889988643 26778899999999986 4555544344444599999999
Q ss_pred HHHHHHHHH
Q 018552 107 LAIAMGISN 115 (354)
Q Consensus 107 ~~v~m~ial 115 (354)
.++..++..
T Consensus 193 ~~~~~~~~~ 201 (452)
T PRK11273 193 PAFAAILVA 201 (452)
T ss_pred HHHHHHHHH
Confidence 877665543
No 91
>PRK03545 putative arabinose transporter; Provisional
Probab=95.27 E-value=0.12 Score=50.45 Aligned_cols=88 Identities=11% Similarity=-0.088 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
...+++...+.++|.+++-+...+.+.+..++ .+.++..++....++|..+++.+.+++.|+.|+...|.+.+
T Consensus 294 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~ 366 (390)
T PRK03545 294 EWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGA 366 (390)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence 44555666677778777777777776665432 25678888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 018552 109 IAMGISNMLFFIGTP 123 (354)
Q Consensus 109 v~m~ial~~f~~g~~ 123 (354)
+..+++++.++...+
T Consensus 367 ~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 367 ALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHcc
Confidence 999888888766543
No 92
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=95.11 E-value=0.09 Score=51.55 Aligned_cols=79 Identities=13% Similarity=0.060 Sum_probs=63.4
Q ss_pred HHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHH
Q 018552 37 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN 115 (354)
Q Consensus 37 ~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~i~~v~m~ial 115 (354)
.+..+|.|+.-|+......|++++++ ++.+.++..+...++|+.+++.+.+++.|..| |..+|.++++..++++
T Consensus 300 ~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (393)
T PRK09705 300 MVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLM 374 (393)
T ss_pred HHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 34567788888877777777775322 36778999999999999999999999999886 8999999988888777
Q ss_pred HHHHh
Q 018552 116 MLFFI 120 (354)
Q Consensus 116 ~~f~~ 120 (354)
+..+.
T Consensus 375 ~~~~~ 379 (393)
T PRK09705 375 IITLR 379 (393)
T ss_pred HHHHH
Confidence 76544
No 93
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=95.11 E-value=0.14 Score=53.20 Aligned_cols=78 Identities=24% Similarity=0.309 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+-...|+...+..-+ +..++|++.+.|+||... ..-..+.-.|...|+.||+++++..+. .|+++
T Consensus 58 ~nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~--l~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt 122 (571)
T KOG1237|consen 58 SNLVTYLTLELHASG-GGAANNVNAFGGTQFLLP--LLGAFLADSFLGRYFTINIGSLISLLG------------LFGLT 122 (571)
T ss_pred hHHHHHHHHHhccch-HHHHHHHHHHhhHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHH
Confidence 455566677777777 999999999999999852 222357888999999999999987654 77888
Q ss_pred HHHHHHHHHHHHh
Q 018552 108 AIAMGISNMLFFI 120 (354)
Q Consensus 108 ~v~m~ial~~f~~ 120 (354)
...|+.++..+-+
T Consensus 123 ~~a~~~~l~p~~~ 135 (571)
T KOG1237|consen 123 LSAMIPALLPFMC 135 (571)
T ss_pred HHHHhhhcCCccc
Confidence 8888777766554
No 94
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.05 E-value=0.26 Score=48.52 Aligned_cols=49 Identities=10% Similarity=-0.119 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh
Q 018552 71 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 71 s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
..+.......++|..+++.+.+++.+ .+|+..|.+.++..++.++.++.
T Consensus 141 ~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 141 FEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred ccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence 45677788889999999999999976 58999999888777666655543
No 95
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.02 E-value=2.5 Score=41.06 Aligned_cols=50 Identities=14% Similarity=-0.052 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 018552 70 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 119 (354)
Q Consensus 70 ~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~ 119 (354)
..+-..+.++..+|.+++.....++.+++||+..|.+.++..++..+..+
T Consensus 132 ~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~ 181 (390)
T TIGR02718 132 AKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVL 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777999999998889999999999999999988876655543
No 96
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=94.98 E-value=0.099 Score=51.87 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----------- 95 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~----------- 95 (354)
.+.+.+.++..+.++|.|...+...++..+.-++++ +.+..++.....++|+.+++.+.+++.
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 356778888899999999999999999888765432 345577888889999999988877663
Q ss_pred ---------------hhhchHHHHHHHHHHHHHHHHHH
Q 018552 96 ---------------MEHGWGSAFGALAIAMGISNMLF 118 (354)
Q Consensus 96 ---------------~~~g~~~gF~i~~v~m~ial~~f 118 (354)
+..+|++.|.+.++..++..+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23579999987777555444433
No 97
>PRK15011 sugar efflux transporter B; Provisional
Probab=94.80 E-value=0.15 Score=49.82 Aligned_cols=75 Identities=9% Similarity=-0.002 Sum_probs=55.3
Q ss_pred HHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 018552 39 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 118 (354)
Q Consensus 39 ia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f 118 (354)
.+++.|..-+...+...|.+++ ++....+++....|+|..+++.+.+++.+..||+..|.++.+..+++++..
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~-------~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPG-------QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL 387 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555565542 245677788888999999999999999999999999999988888887766
Q ss_pred Hh
Q 018552 119 FI 120 (354)
Q Consensus 119 ~~ 120 (354)
+.
T Consensus 388 ~~ 389 (393)
T PRK15011 388 LR 389 (393)
T ss_pred Hh
Confidence 54
No 98
>PRK09528 lacY galactoside permease; Reviewed
Probab=94.79 E-value=0.066 Score=52.82 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~-fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
.+.+++...+.+++.+..-+....++.+.++++. +...+.. +.+..++|+.+++.+.+++.|..||+..|.+.
T Consensus 315 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 315 PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 4455555666777777777777778888886432 3334443 55678899999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 018552 108 AIAMGISNMLFF 119 (354)
Q Consensus 108 ~v~m~ial~~f~ 119 (354)
++..+++.++.+
T Consensus 389 ~~~~~i~~~~~~ 400 (420)
T PRK09528 389 GGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHH
Confidence 877766655444
No 99
>PF13347 MFS_2: MFS/sugar transport protein
Probab=94.74 E-value=1 Score=44.50 Aligned_cols=92 Identities=11% Similarity=0.109 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----Hhh---hch
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI----QME---HGW 100 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i----~~~---~g~ 100 (354)
+...+++...+..++.-.+.-+-.+++.|.-++.|. |.+..++=-++.++|.++...+.+.+ .+. .+|
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~ 176 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY 176 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence 334456666677888888999999999999876553 44555555566667776544444443 332 268
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 018552 101 GSAFGALAIAMGISNMLFFIGTPL 124 (354)
Q Consensus 101 ~~gF~i~~v~m~ial~~f~~g~~~ 124 (354)
.+.+.+.++..+++.++.....|.
T Consensus 177 ~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 177 RWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhheeee
Confidence 888887777777776666665554
No 100
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=94.69 E-value=0.12 Score=50.81 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=54.6
Q ss_pred cccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 018552 46 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 119 (354)
Q Consensus 46 ~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~ 119 (354)
.-+....+..|.++++ .+.......++..|+|+++++.+.+++.++.||.+.|.+.++..+++.++.+
T Consensus 400 ~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 467 (481)
T TIGR00879 400 WGPVPWVIVSEIFPLS------LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467 (481)
T ss_pred ccCeehhhhhccCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHh
Confidence 3477777778888743 2567888999999999999999999999999999999888777666655443
No 101
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=94.60 E-value=0.18 Score=51.18 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------------
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------ 96 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~------------ 96 (354)
...++++..+.++|.|+.-|....+..|.++++. |....+++++..++|.+++..+...+..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 188 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE 188 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 5678889999999999999999999999998543 6788889999999999888877654421
Q ss_pred -----------hhchHHHHHHHHHHHHHHHH
Q 018552 97 -----------EHGWGSAFGALAIAMGISNM 116 (354)
Q Consensus 97 -----------~~g~~~gF~i~~v~m~ial~ 116 (354)
..+|++.|.+.++..++..+
T Consensus 189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 189 ASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred ccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 24799999888776655444
No 102
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=94.41 E-value=1.2 Score=43.41 Aligned_cols=71 Identities=8% Similarity=-0.101 Sum_probs=49.4
Q ss_pred HHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 018552 37 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 116 (354)
Q Consensus 37 ~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~ 116 (354)
.+.+++.+...|....+..|.- + ++...|++.....|+|..+++.+.+.+.+ +||++.|.+.++..++..+
T Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~----~----~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~ 177 (396)
T TIGR00882 107 LYLGFVFSAGAGAIEAYIEKVS----R----NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILML 177 (396)
T ss_pred HHHHHHhccchhhHHHHHHHhh----h----hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHH
Confidence 4455666666666666554421 1 12246778888899999999999888865 5999999998777665543
No 103
>PRK03699 putative transporter; Provisional
Probab=94.23 E-value=0.1 Score=50.96 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 018552 32 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 111 (354)
Q Consensus 32 ~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m 111 (354)
..+...+.+++.++.-|.+.+.+.++.+++++ ...++.+.+.++|+.+++.+.+++.+..||..+|.+.++..
T Consensus 297 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~ 369 (394)
T PRK03699 297 LLYAILGLGFFSSAIYTTIITLGSQQTKVASP-------KLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLY 369 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHH
Confidence 34445556666676777778888887764332 34567788889999999999999999999999988777766
Q ss_pred HHHHH
Q 018552 112 GISNM 116 (354)
Q Consensus 112 ~ial~ 116 (354)
+++.+
T Consensus 370 ~~~~~ 374 (394)
T PRK03699 370 AVVFV 374 (394)
T ss_pred HHHHH
Confidence 66644
No 104
>PRK09952 shikimate transporter; Provisional
Probab=94.20 E-value=0.27 Score=48.97 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhhchHH
Q 018552 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS 102 (354)
Q Consensus 31 ~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~--------~~~g~~~ 102 (354)
.+.+.-.+.++|.|+.-|....+..|.++++. |....+....+.++|.+++..+..++. +.+||+.
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~ 200 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence 46666678899999999999999999887532 455667778888888888876666554 3579999
Q ss_pred HHHHHHHHHHH
Q 018552 103 AFGALAIAMGI 113 (354)
Q Consensus 103 gF~i~~v~m~i 113 (354)
.|.++++..++
T Consensus 201 ~f~~~~~~~l~ 211 (438)
T PRK09952 201 PFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHH
Confidence 99998776443
No 105
>PRK15075 citrate-proton symporter; Provisional
Probab=93.93 E-value=0.32 Score=48.32 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------HhhhchHH
Q 018552 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGS 102 (354)
Q Consensus 31 ~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i--------~~~~g~~~ 102 (354)
.+.++-.+.++|.|+.-|+...+.+|.+++++ |....+++..+.++|..+++.+...+ .+.+||++
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 45677788899999999999999999997543 56677777777777766666554444 35789999
Q ss_pred HHHHHHH
Q 018552 103 AFGALAI 109 (354)
Q Consensus 103 gF~i~~v 109 (354)
.|.+..+
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9998654
No 106
>PRK09669 putative symporter YagG; Provisional
Probab=93.85 E-value=0.24 Score=49.35 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK-THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 101 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~-~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~ 101 (354)
.+.+.+++...+.++|.|+.-+...++.+|..|.++.+.. ++...+|+.+.++.++|..+++.+.+++-+..||.
T Consensus 317 ~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 317 SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456677778889999999999999999999985443211 22345788999999999999999998887777763
No 107
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=93.69 E-value=0.17 Score=51.24 Aligned_cols=94 Identities=13% Similarity=0.274 Sum_probs=77.6
Q ss_pred cchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 018552 26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 105 (354)
Q Consensus 26 ~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~ 105 (354)
..+.+.+.+...++++|..+.-|...++..++-+++ .|..++..++.+..+|..++..+.....+..||..-|+
T Consensus 378 ~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~------~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~ 451 (475)
T TIGR00924 378 LTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR------LMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFG 451 (475)
T ss_pred ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 356777888888999999999999999998876532 47899999999999999999888877777778988999
Q ss_pred HHHHHHHHHHHHHHhcccce
Q 018552 106 ALAIAMGISNMLFFIGTPLY 125 (354)
Q Consensus 106 i~~v~m~ial~~f~~g~~~y 125 (354)
..++.+++..++++..++..
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~ 471 (475)
T TIGR00924 452 KIGLVTLLVGVVMALMVPWL 471 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777665544
No 108
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=93.62 E-value=4 Score=41.60 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=37.7
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 018552 283 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 323 (354)
Q Consensus 283 ~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~~~t~ 323 (354)
++.+..|++..+...|+|-++.=..+.++..++.++...|+
T Consensus 404 ~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 404 LFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57789999999999999999999999999999999988775
No 109
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=93.59 E-value=0.2 Score=53.76 Aligned_cols=74 Identities=8% Similarity=0.046 Sum_probs=56.4
Q ss_pred HHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 018552 39 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 118 (354)
Q Consensus 39 ia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f 118 (354)
+.+..++.-+.+.++.+|.|+.+ .|..++.+.+...++|+++++.+.+++.+. +....|.++++.++++.++.
T Consensus 658 ~g~~~~~~~~~~~a~~aEl~Pt~------~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~ 730 (742)
T TIGR01299 658 FGGLSIAAWNALDVLTVELYPSD------KRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLA 730 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Confidence 33444455566778889999742 378999999999999999999998887763 56778888888877766654
Q ss_pred H
Q 018552 119 F 119 (354)
Q Consensus 119 ~ 119 (354)
+
T Consensus 731 ~ 731 (742)
T TIGR01299 731 L 731 (742)
T ss_pred H
Confidence 4
No 110
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=93.59 E-value=0.19 Score=50.19 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=47.3
Q ss_pred hhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 018552 52 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 119 (354)
Q Consensus 52 ~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGsli-a~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~ 119 (354)
.+..|.++++ .+.+.+.++....++|+.+ ++.+.+++.+..||+.+|.++.+..+++++...
T Consensus 370 ~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 370 LHALELAPKK------AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHcChh------hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3445555432 3678888899888998654 789999999999999999988887777655443
No 111
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=93.55 E-value=0.16 Score=48.94 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALA 108 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~i~~ 108 (354)
..+.+++.+..+..++.-+...++..|.++++ ++.+.+++++...++|+.+++.+.+++.++.| |..+|....
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~~ 402 (405)
T TIGR00891 329 AVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD------QRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASLS 402 (405)
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHhhhCCcc------hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhc
Confidence 34444545555555666667778888877643 36788999999999999999999999999999 888777654
Q ss_pred H
Q 018552 109 I 109 (354)
Q Consensus 109 v 109 (354)
+
T Consensus 403 ~ 403 (405)
T TIGR00891 403 F 403 (405)
T ss_pred c
Confidence 3
No 112
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=93.46 E-value=0.24 Score=53.20 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------- 97 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~---------- 97 (354)
+.+.++++..+.++|.|+.-|...++++|.++++ .|...++++.++..+|.++++.+...+...
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 4667888888999999999999999999999732 356778888888888988887765554432
Q ss_pred ---hchHHHHHHHHHHHHHHHHHH
Q 018552 98 ---HGWGSAFGALAIAMGISNMLF 118 (354)
Q Consensus 98 ---~g~~~gF~i~~v~m~ial~~f 118 (354)
.+|++.|.++++..+++++.+
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHH
Confidence 368888888887776665544
No 113
>PRK11663 regulatory protein UhpC; Provisional
Probab=93.33 E-value=0.26 Score=48.93 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 018552 68 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 119 (354)
Q Consensus 68 ~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~ 119 (354)
++.....+.++..++|..+++.+.+++.+..||...|.+.+++.+++.++.+
T Consensus 370 ~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 370 AAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred hHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999999999999999999999888777665443
No 114
>PRK03893 putative sialic acid transporter; Provisional
Probab=93.23 E-value=0.29 Score=49.17 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=48.3
Q ss_pred cccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 018552 46 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 113 (354)
Q Consensus 46 ~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~i 113 (354)
.-+...++..|.++++ ++.+.+++++...++|+.+++.+.+++.++.||+..|.+.++++.+
T Consensus 383 ~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 383 ISGLLPKLIGGYFDTE------QRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred cchhhHHHHHhhCCHH------HhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 3455666777777632 3678899999999999999999999999999998887655544443
No 115
>PRK09848 glucuronide transporter; Provisional
Probab=92.90 E-value=4 Score=40.55 Aligned_cols=34 Identities=6% Similarity=0.076 Sum_probs=26.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 018552 289 PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 322 (354)
Q Consensus 289 P~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~~~t 322 (354)
+++..|..+|++.+..-+|..+++.+...+-..+
T Consensus 356 g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 356 GVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456799999999999999999888877654444
No 116
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=92.76 E-value=0.44 Score=46.89 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcc-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH-----
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS----- 102 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~-~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~----- 102 (354)
...+++...+.++|.|..-+...++.+|..|.++-+ .+++...+++.+.+..++|..+++.+.+++.+..||..
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~ 390 (437)
T TIGR00792 311 LPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQS 390 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCC
Confidence 445566667778889988999999999988754321 11235678899999999999999999999988777632
Q ss_pred ----------HHHHHHHHHHHHHHHHH
Q 018552 103 ----------AFGALAIAMGISNMLFF 119 (354)
Q Consensus 103 ----------gF~i~~v~m~ial~~f~ 119 (354)
-..+|+++.+++++++.
T Consensus 391 ~~~~~~~~~~~~~~p~i~~~~~~~~~~ 417 (437)
T TIGR00792 391 PITLNGIKILMFAVPALFLLLAAIIIG 417 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24455555655555443
No 117
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=92.61 E-value=12 Score=37.25 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc----hHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG----WGSAF 104 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g----~~~gF 104 (354)
.....++..++.+|.+.-...-.++.+|.=+|++ |.+.-++-|.-.-+|-.++.++.+.+-+.++ ....-
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~ 162 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ 162 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 3344444455666666667777788888877543 5666677777777888888888877766654 33444
Q ss_pred HHHHHHHHHHHHHHHhcccceee
Q 018552 105 GALAIAMGISNMLFFIGTPLYRH 127 (354)
Q Consensus 105 ~i~~v~m~ial~~f~~g~~~y~~ 127 (354)
.++.+.+.+.++-.+-..+++.+
T Consensus 163 ~~a~i~~~l~~ia~wg~E~r~~~ 185 (403)
T PF03209_consen 163 GVALIALLLNLIALWGQEPRRSR 185 (403)
T ss_pred HHHHHHHHHHHHHHHhcccCCcc
Confidence 45555555555555544454443
No 118
>PRK10133 L-fucose transporter; Provisional
Probab=92.54 E-value=0.87 Score=45.52 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 94 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i 94 (354)
.+...++++..+.++|.|...+...+++.|..++ +. +....+.+.....+|..+++.+.+.+
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-~~-----~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-SS-----GHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-hh-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999975432 21 33346667777788888888776554
No 119
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=92.46 E-value=0.26 Score=48.94 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=58.8
Q ss_pred cCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhhhchHHHHHHHHHH-HHHHHHHHHh
Q 018552 44 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIA-MGISNMLFFI 120 (354)
Q Consensus 44 G~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~--~~i~~~~g~~~gF~i~~v~-m~ial~~f~~ 120 (354)
|-=-|...-.++.=|..++ |.+..+++-.+-|+|+.+.+.++ +++..+++|+.+|.+|++. ++++++.+..
T Consensus 132 g~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 132 GMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred cCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3334666777788887443 67888999999999999999999 9999999999999999876 5556776666
Q ss_pred ccc
Q 018552 121 GTP 123 (354)
Q Consensus 121 g~~ 123 (354)
+|.
T Consensus 206 ~rd 208 (448)
T COG2271 206 LRD 208 (448)
T ss_pred hCC
Confidence 654
No 120
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=92.43 E-value=0.31 Score=48.00 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---c-hHHHHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---G-WGSAFG 105 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~---g-~~~gF~ 105 (354)
..+.+...+..+|.+...|...+...|..++++ +.+.++++....++|..+++.+.+++-|+. + ....|.
T Consensus 298 ~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~ 371 (400)
T PRK11646 298 QQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWM 371 (400)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHH
Confidence 334445566778888888999999998887543 567888888999999999999999998764 2 356666
Q ss_pred HHHHHHHHHHHHHH
Q 018552 106 ALAIAMGISNMLFF 119 (354)
Q Consensus 106 i~~v~m~ial~~f~ 119 (354)
+.++..+++.++..
T Consensus 372 ~~~~~~~~~~~~~~ 385 (400)
T PRK11646 372 MLGIIGLITLLALY 385 (400)
T ss_pred HHHHHHHHHHHHHH
Confidence 65555555555443
No 121
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=92.31 E-value=0.68 Score=46.78 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh---------hh
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------EH 98 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~---------~~ 98 (354)
+...++++..+.++|.|..-+ ....+++.|+++ +|..+..+++...|+|+.++..+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 345566666667777776533 445677888643 35677888888888888888766665532 25
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 018552 99 GWGSAFGALAIAMGISNML 117 (354)
Q Consensus 99 g~~~gF~i~~v~m~ial~~ 117 (354)
||++.|.+.++..++..+.
T Consensus 196 gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8999999988776554433
No 122
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=92.24 E-value=0.22 Score=50.06 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=64.0
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---chHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSA 103 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~---g~~~g 103 (354)
.+...+++...+.++|.|..-|...+.++|-|++++ |...+.++-.+.++|..+++.+..++.+.. +|+..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 356677777778889999888999999999998643 556778888899999999988887776653 68888
Q ss_pred HHHHHHHHHH
Q 018552 104 FGALAIAMGI 113 (354)
Q Consensus 104 F~i~~v~m~i 113 (354)
|.++++..++
T Consensus 194 f~~~g~~~~~ 203 (467)
T PRK09556 194 FIFPSIIALI 203 (467)
T ss_pred HHHHHHHHHH
Confidence 8887665544
No 123
>PRK11010 ampG muropeptide transporter; Validated
Probab=92.20 E-value=0.77 Score=46.66 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=55.6
Q ss_pred cCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccc
Q 018552 44 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 123 (354)
Q Consensus 44 G~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~g~~ 123 (354)
|..-+...++..+..+++-+ ...+.+++...++|..+++.+.+++.|.+||...|.+.++..+++++.....++
T Consensus 331 g~~~~~~~a~~~~l~~~~~~------~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 331 GMGTAAFVALLMTLCNKSFS------ATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334455666666654332 455788888899999888888999999999999999999999888877765443
No 124
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=92.19 E-value=0.54 Score=45.80 Aligned_cols=83 Identities=7% Similarity=-0.033 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chHHHHHHHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALA 108 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~-g~~~gF~i~~ 108 (354)
..+++...+++++.++..+...++..|.+++++ +.....+++...++|+.+++.+.+++-++. +|...|.+..
T Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~ 382 (406)
T PRK11551 309 AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASI 382 (406)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHH
Confidence 344455555666666777888888888886433 678899999999999999999999987764 5666666666
Q ss_pred HHHHHHHHHH
Q 018552 109 IAMGISNMLF 118 (354)
Q Consensus 109 v~m~ial~~f 118 (354)
...+++.+..
T Consensus 383 ~~~~~~~~~~ 392 (406)
T PRK11551 383 PVILVAALAA 392 (406)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 125
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=92.02 E-value=0.73 Score=44.80 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=53.6
Q ss_pred hccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 018552 42 GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 117 (354)
Q Consensus 42 GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~ 117 (354)
+.|..-+...+...+..++++ .+...++++....++|..+++.+.+++.|..||...|.++++..+++++.
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 316 ITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 345555555566566554322 35678888888899999999999999999999999999988877766543
No 126
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.81 E-value=2.2 Score=45.55 Aligned_cols=89 Identities=19% Similarity=0.320 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------------
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------ 96 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~------------ 96 (354)
..+|++|..+.++|.--+ .++|--..||+..+ ++...++.++|..--+|-.+|.++.+..-+
T Consensus 237 ~llff~~q~l~GIG~Tpi----~tlGisYiDDnvk~--~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i 310 (735)
T KOG3626|consen 237 FLLFFLGQLLLGIGATPI----FTLGISYIDDNVKK--KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI 310 (735)
T ss_pred HHHHHHHHHHhhcCCCCC----ccCCCccccccccc--cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC
Confidence 447777888887776544 45555555655432 235678888888888888888887776532
Q ss_pred ------hhc-hHHHHHHHHHHHHHHHHHHHhccc
Q 018552 97 ------EHG-WGSAFGALAIAMGISNMLFFIGTP 123 (354)
Q Consensus 97 ------~~g-~~~gF~i~~v~m~ial~~f~~g~~ 123 (354)
.+| ||+||++++..++++.+.++.-=+
T Consensus 311 t~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 311 TPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 233 999999999999988887766433
No 127
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=91.81 E-value=0.92 Score=44.45 Aligned_cols=82 Identities=17% Similarity=0.088 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
....++...+.+++.++.-|. .+...+. + |+ ++...+.+++...++|+.+++.+.+++-+..||...|.+.+
T Consensus 316 ~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~---~~---~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a 387 (402)
T TIGR00897 316 FAVALIIAIALGIFLAGYVPL-AAVFPTL-A---PK---HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFA 387 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhh-C---cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 344455555666666665443 3444432 2 21 36899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHH
Q 018552 109 IAMGISNMLF 118 (354)
Q Consensus 109 v~m~ial~~f 118 (354)
+..+++.+..
T Consensus 388 ~~~~i~~~~~ 397 (402)
T TIGR00897 388 ALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHH
Confidence 8776665543
No 128
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=91.72 E-value=0.27 Score=46.91 Aligned_cols=79 Identities=13% Similarity=0.002 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhhc-hHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHG-WGSAFG 105 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY-~~iNiGslia~~~~~~i~~~~g-~~~gF~ 105 (354)
....+++++.+..++.|..-+...++..|.+++++ |.+.++..| ++..+|+.+++.+.+++.++.| |...+.
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~ 384 (394)
T TIGR00883 311 SFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGY 384 (394)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHH
Confidence 34455566677778888888999999999998543 345555544 4566899899999999999988 776666
Q ss_pred HHHHHHH
Q 018552 106 ALAIAMG 112 (354)
Q Consensus 106 i~~v~m~ 112 (354)
...+..+
T Consensus 385 ~~~~~~l 391 (394)
T TIGR00883 385 YLAALAL 391 (394)
T ss_pred HHHHHHH
Confidence 6555443
No 129
>PRK10054 putative transporter; Provisional
Probab=91.45 E-value=1.1 Score=44.09 Aligned_cols=84 Identities=15% Similarity=-0.006 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
.+.+.++..+.++|.+..-|+..+.+.+.-+++ ++..+|+. +...++|..+++.+.+++.|.+|+...|.+-+
T Consensus 298 ~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~------~~~~~~~~-~~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~ 370 (395)
T PRK10054 298 LLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPG------MKASYFSA-QSLGWLGAAINPLVSGVILTTLPPWSLFVILA 370 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc------cceehHhH-HHHHHHHHHHHHHHHHHHHHHcChhhHHHHHH
Confidence 344555666777787777777777777755532 24556664 34566899999999999999999999998866
Q ss_pred HHHHHHHHHHH
Q 018552 109 IAMGISNMLFF 119 (354)
Q Consensus 109 v~m~ial~~f~ 119 (354)
+...++.+.-.
T Consensus 371 ~~~~~~~~~~~ 381 (395)
T PRK10054 371 LAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHHH
Confidence 55554444333
No 130
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=91.44 E-value=0.91 Score=44.52 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.+.++++..+.++|.+..-+...+++.+..+++ ..+..++++...++|..+++.+.+++.+.+|+...|..+
T Consensus 304 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~ 376 (394)
T PRK10213 304 DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLS 376 (394)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHH
Confidence 3455666777788888888888888888776532 234456677788899999999999999999999999888
Q ss_pred HHHHHHH
Q 018552 108 AIAMGIS 114 (354)
Q Consensus 108 ~v~m~ia 114 (354)
++..++.
T Consensus 377 ~~~~~~~ 383 (394)
T PRK10213 377 GTLMLLT 383 (394)
T ss_pred HHHHHHH
Confidence 7665433
No 131
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=91.11 E-value=1.2 Score=45.43 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~i 106 (354)
+.+-+|+-=.++++..|+..+..-++.++.-+++. ...+|..|-+.--..++++|++.+.+.+..| .+.||..
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 44556666667999999999999999999998654 4689999999999999999999999998886 8899999
Q ss_pred HHHHHHHHHHHHHh
Q 018552 107 LAIAMGISNMLFFI 120 (354)
Q Consensus 107 ~~v~m~ial~~f~~ 120 (354)
-.+.++++++++..
T Consensus 453 l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 453 LLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999888887754
No 132
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=90.94 E-value=15 Score=36.83 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.....+.+.+..+|.....-..-++..|.=++++.. +...=++.|...++|++++..+.+++.++.+++..|.++
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 3444555666777888877777777777776544332 445567789999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++...+.++.
T Consensus 161 ~~~~~l~~~~ 170 (433)
T PF03092_consen 161 AALPLLMLIV 170 (433)
T ss_pred HHHHHHHHHH
Confidence 8776666443
No 133
>PRK11462 putative transporter; Provisional
Probab=90.84 E-value=2.6 Score=42.43 Aligned_cols=83 Identities=10% Similarity=0.118 Sum_probs=52.4
Q ss_pred HHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------hchHHHHHHHH
Q 018552 36 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALA 108 (354)
Q Consensus 36 L~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~-------~g~~~gF~i~~ 108 (354)
..+..++.-++.-.-.+++++.=+| ++ +|.+..++.-.+.++|.++++++.+.+-+. .||.....+.+
T Consensus 116 ~~~~~~~~t~~~ipy~al~~~lt~d--~~---eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ 190 (460)
T PRK11462 116 YTLLTLLYTVVNIPYCALGGVITND--PT---QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS 190 (460)
T ss_pred HHHHHHHHHHHhccHHHHHHHhcCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 3344556666666777788877764 43 367888888899999988776665433332 35777666666
Q ss_pred HHHHHHHHHHHhccc
Q 018552 109 IAMGISNMLFFIGTP 123 (354)
Q Consensus 109 v~m~ial~~f~~g~~ 123 (354)
+..++...+.+...|
T Consensus 191 ii~~i~~~i~~~~~k 205 (460)
T PRK11462 191 VVAFMMLAFCFFTTK 205 (460)
T ss_pred HHHHHHHHHHHhcce
Confidence 665555544444443
No 134
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=90.61 E-value=1.2 Score=43.40 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY-~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
+.+.+++.-.+.++..|.+-+....++.++ ++++ +..+...|. .+..+|..+++.+.+++.|++|+ ..|.+
T Consensus 292 ~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~ 363 (382)
T TIGR00902 292 AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVF 363 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHH
Confidence 445566667788888899888888888875 4322 345555555 36779999999999999999997 66777
Q ss_pred HHHHHHHHHHHHH
Q 018552 107 LAIAMGISNMLFF 119 (354)
Q Consensus 107 ~~v~m~ial~~f~ 119 (354)
.++..++++++.+
T Consensus 364 ~~~~~~~~~~~~~ 376 (382)
T TIGR00902 364 MAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666665543
No 135
>PRK09669 putative symporter YagG; Provisional
Probab=90.55 E-value=2.5 Score=42.07 Aligned_cols=83 Identities=6% Similarity=0.085 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhchHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGS 102 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~-------~~g~~~ 102 (354)
..+++...+..++..++-..-.++++|.-++.+ +|.+..++.....|+|..++..+.+.+.. ..||..
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~ 184 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY 184 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence 333333334444444666677788888775433 26678888888999998887664433322 357877
Q ss_pred HHHHHHHHHHHHHHH
Q 018552 103 AFGALAIAMGISNML 117 (354)
Q Consensus 103 gF~i~~v~m~ial~~ 117 (354)
.+.+.++...+..++
T Consensus 185 ~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 185 AMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666555443
No 136
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=90.47 E-value=0.47 Score=48.52 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------hhchHHHH
Q 018552 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAF 104 (354)
Q Consensus 31 ~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~------~~g~~~gF 104 (354)
.+.+--.+.++=.++.-|+.....+.-|++++ +..-+.+||.+.++|+.++.++...+.+ ..||++-|
T Consensus 136 ~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~F 209 (495)
T KOG2533|consen 136 GLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLF 209 (495)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeeh
Confidence 33333456777788889999999999998654 4566888999999999999998888643 57999999
Q ss_pred HHHHHHHHHHHH
Q 018552 105 GALAIAMGISNM 116 (354)
Q Consensus 105 ~i~~v~m~ial~ 116 (354)
.+.++.+++.-+
T Consensus 210 iI~G~i~~~~gi 221 (495)
T KOG2533|consen 210 IIEGVITLVLGI 221 (495)
T ss_pred hHHHHHHHHHHh
Confidence 999988766443
No 137
>PRK09952 shikimate transporter; Provisional
Probab=90.22 E-value=1.5 Score=43.56 Aligned_cols=84 Identities=12% Similarity=0.023 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhh--chHHHHHHHH
Q 018552 32 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYIQMEH--GWGSAFGALA 108 (354)
Q Consensus 32 ~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~-iNiGslia~~~~~~i~~~~--g~~~gF~i~~ 108 (354)
+.+++.+..++.|..-+...++..|.|+.+ .|.++..+-|.. ..+|+.+++.+++++.+.. +|...|...+
T Consensus 346 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~------~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~ 419 (438)
T PRK09952 346 VFFSIMLANIAHDMVVCVQQPMFTEMFGAS------YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLL 419 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCcc------hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 334455556777777788889999999753 255666665554 4488889999999997744 4888888877
Q ss_pred HHHHHHHHHHHhc
Q 018552 109 IAMGISNMLFFIG 121 (354)
Q Consensus 109 v~m~ial~~f~~g 121 (354)
+..+++.+..+..
T Consensus 420 ~~~~i~~v~~~~~ 432 (438)
T PRK09952 420 AGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHc
Confidence 7777776665443
No 138
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=90.08 E-value=1.7 Score=42.54 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~-g~~~gF~i 106 (354)
+...+|.|-.++.+|-+....-+++++-+-|+++ ....-..|-.+.++|+.++..+++.+.++. ||+.+.+.
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 6778889999999999999999999998888743 457778889999999999999999988877 79999998
Q ss_pred HHHHHHHHHHHHHhcc
Q 018552 107 LAIAMGISNMLFFIGT 122 (354)
Q Consensus 107 ~~v~m~ial~~f~~g~ 122 (354)
=++.-++++++.+-..
T Consensus 171 WAl~allAl~~WlPq~ 186 (395)
T COG2807 171 WALLALLALLIWLPQA 186 (395)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 8888888888877663
No 139
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=89.94 E-value=1.3 Score=44.44 Aligned_cols=63 Identities=19% Similarity=0.078 Sum_probs=49.3
Q ss_pred hhhhhcCCCCCcchhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHh------------hhchHHHHHHHHHHHHHHHHHH
Q 018552 52 SFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLF 118 (354)
Q Consensus 52 ~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNi-Gslia~~~~~~i~~------------~~g~~~gF~i~~v~m~ial~~f 118 (354)
....|.++++ .+..+....-...|+ |..+++.+.+++.+ ..||..+|.+..++++++.+..
T Consensus 372 ~~~~~~~p~~------~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 372 VAAVGFVPKK------AIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred HHHHhhcchh------hHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 4455666532 367788888888887 77899999999999 6789999999988888887766
Q ss_pred Hh
Q 018552 119 FI 120 (354)
Q Consensus 119 ~~ 120 (354)
+.
T Consensus 446 ~~ 447 (467)
T PRK09556 446 AI 447 (467)
T ss_pred HH
Confidence 53
No 140
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=89.55 E-value=2.7 Score=41.85 Aligned_cols=78 Identities=5% Similarity=-0.060 Sum_probs=53.9
Q ss_pred HHHHHHHhccC-cccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HhhhchHHHHHHH
Q 018552 35 VLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI------QMEHGWGSAFGAL 107 (354)
Q Consensus 35 gL~lia~GtG~-~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i------~~~~g~~~gF~i~ 107 (354)
++.+...|.+. .-|+..++..|.++++ .|..+..+.+...++|+++++.+.|.+ .+.+||...|.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 442 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNA------IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY 442 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChh------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHH
Confidence 34444444432 4578888899988632 378889999999899998886666644 4678898888887
Q ss_pred HHHHHHHHHHH
Q 018552 108 AIAMGISNMLF 118 (354)
Q Consensus 108 ~v~m~ial~~f 118 (354)
++..+++.+..
T Consensus 443 ~~~~~~~~~~~ 453 (479)
T PRK10077 443 GCMGVLAALFM 453 (479)
T ss_pred HHHHHHHHHHH
Confidence 76655555443
No 141
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=89.38 E-value=0.56 Score=44.44 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=45.7
Q ss_pred HHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 018552 37 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 104 (354)
Q Consensus 37 ~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF 104 (354)
.+++...++.-+...++..|.++++ .+...++++....++|..+++.+.+++.+++||..+|
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 318 FALGFLVYGPQMLIGVIASELAPKK------AAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcCcc------hhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 3333334444444556667776543 3678899999999999999999999999999998765
No 142
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=89.25 E-value=1.4 Score=45.34 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=47.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh
Q 018552 68 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 68 ~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
.+.+.++.|.+..+.|..+|.++.+++.+.+|-..++.+++++++++.++.+.
T Consensus 340 ~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 340 VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999998888777654
No 143
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=89.19 E-value=0.85 Score=45.31 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=47.9
Q ss_pred hhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh
Q 018552 52 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 52 ~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGs-lia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
....|.++++ .+..+..+++...++|+ ++++.+.+++.++.||..+|.+..+..+++++..+.
T Consensus 368 ~~~~~~~~~~------~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 368 LHALELAPKK------AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred HHHHHhcChh------heeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 4556666532 25678888888888874 678999999999999999999888877777666543
No 144
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=89.17 E-value=1 Score=43.90 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~-fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
...+++...+-+++.+...........++++++. +...++. +.+..++|+.+++.+.+++-+.+||+..|.+.
T Consensus 307 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~ 380 (396)
T TIGR00882 307 ALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVL 380 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHH
Confidence 3334444444444443333333334444444221 2334444 55789999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 018552 108 AIAMGISNML 117 (354)
Q Consensus 108 ~v~m~ial~~ 117 (354)
++..++..++
T Consensus 381 ~~~~~i~~~~ 390 (396)
T TIGR00882 381 GCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHH
Confidence 8887766553
No 145
>PRK09848 glucuronide transporter; Provisional
Probab=88.75 E-value=1.7 Score=43.28 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchH-----
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG----- 101 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~-~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~----- 101 (354)
+.+.+++++.+.++|.|...+...++.+|.-|+++-+. +++...+++.+-+...+|..+++.+.+.+-+..||.
T Consensus 318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~ 397 (448)
T PRK09848 318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQ 397 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 45567777888999999999999999998887554221 123456678899999999999988887775555542
Q ss_pred ---------HH-HHHHHHHHHHHHHHH
Q 018552 102 ---------SA-FGALAIAMGISNMLF 118 (354)
Q Consensus 102 ---------~g-F~i~~v~m~ial~~f 118 (354)
.. ..+|+++++++++++
T Consensus 398 ~~~~~~~i~~~~~~~p~~~~~~~~~~~ 424 (448)
T PRK09848 398 TPEVIMGIRTSIALVPCGFMLLAFVII 424 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 255666666665554
No 146
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=88.11 E-value=0.75 Score=43.36 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 99 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g 99 (354)
.+.++++..+.++|.|...+...++..|..+++ ++.+.++.++...++|..+++.+.+++.|++|
T Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAE------LLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 566777788889999999999999999988742 36889999999999999999999999988764
No 147
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=87.64 E-value=1.8 Score=42.25 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=50.7
Q ss_pred HHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 018552 39 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 118 (354)
Q Consensus 39 ia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f 118 (354)
.+++.+..-+....+..+.++.+ .+.++....++|..++..+.+++.|..||...|.+.++..++++++.
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 317 GGMGTAAFVALLMALCNRSFSAT----------QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666555421 24555555578887777788999999999999999998888877765
Q ss_pred Hhcc
Q 018552 119 FIGT 122 (354)
Q Consensus 119 ~~g~ 122 (354)
+...
T Consensus 387 ~~~~ 390 (402)
T PRK11902 387 WLMR 390 (402)
T ss_pred HHHh
Confidence 4433
No 148
>PF13347 MFS_2: MFS/sugar transport protein
Probab=87.19 E-value=2.1 Score=42.27 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK-THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 100 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~-~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~ 100 (354)
.+.+.+++...+..+|.|..-+...++.+|.-|.++-+.. ++-...++.+-+...+|..++..+.+.+-+..||
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 5678888889999999999999999999999986543321 2235778888899999999999988887655554
No 149
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=86.88 E-value=5 Score=40.70 Aligned_cols=87 Identities=8% Similarity=-0.048 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----h-----
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-----M----- 96 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~-----~----- 96 (354)
.+...+++.-.++++| |+.-+.....+.+.|++++ +..+..++-...|+|..++..+.|.+. +
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~ 198 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN 198 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3566777777778887 5566778888999997532 567788887777888877666655432 2
Q ss_pred --------hhchHHHHHHHHHHHHHHHHHHHh
Q 018552 97 --------EHGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 97 --------~~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
..+|+.++.+-.+..+++.+.+++
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555455544444
No 150
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=86.65 E-value=4 Score=41.21 Aligned_cols=72 Identities=8% Similarity=-0.084 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 106 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~i 106 (354)
...++++..+.+++.|+.-+.......+.|+++ .|..+..+.|-..++++.+++.+.+++.+..+ |...+.+
T Consensus 342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~------~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~ 414 (490)
T PRK10642 342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH------IRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYY 414 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 445556666666665655566677777887643 25677887666667777788888899887654 5544433
No 151
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=86.34 E-value=1.4 Score=41.96 Aligned_cols=71 Identities=13% Similarity=0.022 Sum_probs=56.0
Q ss_pred HHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 018552 34 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 112 (354)
Q Consensus 34 ~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ 112 (354)
+++.++++|.+.+-|++.+...+.++++.. .-+.. ...-.+|+.+.|.+.+++.|..|.+.+|.++.++.+
T Consensus 235 ~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~-----~asai---~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~ 305 (310)
T TIGR01272 235 WFVLALGLFNSIMFPTIFSLALNALGRHTS-----QGSGI---LCLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYL 305 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hhHHH---HHHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 466688999999999999999999875432 22333 245668999999999999999999999987776654
No 152
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=85.93 E-value=2.8 Score=41.79 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHh
Q 018552 68 HLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 68 ~~~s~F~~fY~~iNiGslia~~~~~~i~~~---~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
.......+..+..++|+++++.+++++.+. .+|..+|.+.++..+++.+.+..
T Consensus 393 ~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 367788888889999999999999988764 35999999999999888877654
No 153
>PRK15075 citrate-proton symporter; Provisional
Probab=85.91 E-value=3.3 Score=41.03 Aligned_cols=60 Identities=10% Similarity=-0.044 Sum_probs=42.0
Q ss_pred HHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhch
Q 018552 35 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGW 100 (354)
Q Consensus 35 gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNi-Gslia~~~~~~i~~~~g~ 100 (354)
.+.++.++.|...+...+...|.++++. |..++.+.|-..+. |+.+++.+.+++.++.|+
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 337 VELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 3444556777777767778888887432 56677776655554 466789999999998885
No 154
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=85.48 E-value=4.3 Score=39.32 Aligned_cols=81 Identities=14% Similarity=0.013 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
...+.++..+..+|.|..-|...+...|.++++ +......+....|+|..+++.+.+++.++..+..+..++.
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (394)
T PRK11652 299 VWTLLVPAALFFFGAGMLFPLATSGAMEPFPYL-------AGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGLLMTL 371 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 445666777888899998999999888877532 3455677777889999999999888887777776666555
Q ss_pred HHHHHHHH
Q 018552 109 IAMGISNM 116 (354)
Q Consensus 109 v~m~ial~ 116 (354)
+..+..+.
T Consensus 372 ~~~~~~~~ 379 (394)
T PRK11652 372 MGLLILLC 379 (394)
T ss_pred HHHHHHHH
Confidence 44443333
No 155
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=84.81 E-value=5.3 Score=40.45 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=46.4
Q ss_pred cchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----------hchHHHHHHHHHHHHHHHH
Q 018552 48 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNM 116 (354)
Q Consensus 48 ~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~----------~g~~~gF~i~~v~m~ial~ 116 (354)
+....+.+|.|+.+ .|..+..+.+...++|+++++.+.+++.+. .|+...|.+.++..+++.+
T Consensus 411 ~~~~~~~~E~~p~~------~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 411 ATTFIVPGEVFPTR------YRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred chhhhhhhccCchh------HHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 34445567777643 478899999999999999999999999773 4556677777666666544
No 156
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=84.75 E-value=3.3 Score=46.44 Aligned_cols=80 Identities=8% Similarity=-0.135 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~-~~g~~~gF~i 106 (354)
+.+.+++++.++++|.|.+-+...+++.+..+++. +.+.+..+.+..++|..+++.+.+.+.+ ..++...|.+
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~ 406 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF 406 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 44566778888899999999889998888887544 5678888888899999999988888874 4577777766
Q ss_pred HHHHHHH
Q 018552 107 LAIAMGI 113 (354)
Q Consensus 107 ~~v~m~i 113 (354)
.+++.++
T Consensus 407 ~~~~~~~ 413 (1140)
T PRK06814 407 IALANLI 413 (1140)
T ss_pred HHHHHHH
Confidence 6554433
No 157
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=84.62 E-value=8.1 Score=38.35 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhcccceee
Q 018552 69 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 127 (354)
Q Consensus 69 ~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~g~~~y~~ 127 (354)
.|..=+++--..|+|-.++..+-+.+-|++||.....++++.++++++..+...+..++
T Consensus 333 ~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 333 ADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46666667777777777777778888888999999999999999999988776665433
No 158
>PRK10504 putative transporter; Provisional
Probab=84.25 E-value=4.5 Score=40.31 Aligned_cols=65 Identities=9% Similarity=0.108 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 018552 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 101 (354)
Q Consensus 31 ~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~ 101 (354)
.+.+.+.+.++|.|..-+....+..+..+++ .+...++++.+..++|..+++.+.+.+-+..|+.
T Consensus 355 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 355 LLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN------LASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------hccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444566666788877777778888877643 2567899999999999999999998887776663
No 159
>PRK10091 MFS transport protein AraJ; Provisional
Probab=83.93 E-value=4.9 Score=38.93 Aligned_cols=44 Identities=5% Similarity=-0.053 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHh
Q 018552 77 YLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 77 Y~~iNiGslia~~~~~~i~~~-~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
....++|..+++.+.+++-|. .||...|.++++...+++.....
T Consensus 330 ~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 330 QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 566789999999999998874 78999999998887776665543
No 160
>PRK10429 melibiose:sodium symporter; Provisional
Probab=83.91 E-value=4.2 Score=40.94 Aligned_cols=73 Identities=14% Similarity=0.036 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 100 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~-~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~ 100 (354)
..+.+.+...+..+|.|..-+...++.+|.-|.++-+. +++...+|+.+-+...+|..+++.+.+++-+..||
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566667777889999999999999999987553221 12233578999999999999999988888665555
No 161
>TIGR00898 2A0119 cation transport protein.
Probab=83.89 E-value=3.1 Score=41.88 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=49.4
Q ss_pred HHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 018552 39 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 117 (354)
Q Consensus 39 ia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~ 117 (354)
..++.++.-+....+.+|.|+++ .|..+..+......+|+++++.+.+ +. ..++...|.+.++..+++.+.
T Consensus 420 ~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 420 GKFGITSAFQMVYLYTAELYPTV------VRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHHHhcccccHH------HHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHH
Confidence 33444555566777888888642 3678899999999999999998877 43 456666666666665555443
No 162
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=83.65 E-value=1.5 Score=43.35 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=38.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHH
Q 018552 68 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 111 (354)
Q Consensus 68 ~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~i~~v~m 111 (354)
++...+.+.+...|+|+.+++.+.+.+.+..| |..+|.++++..
T Consensus 366 ~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 366 ARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 47788999999999999999999999999875 999998877643
No 163
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=83.44 E-value=5.7 Score=44.41 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~-~~g~~~gF~i 106 (354)
+...+.+++.+++++.|++-+...+++.+..+++ .+.++++++.+..++|.++++.+.+.+.. .+++...|.+
T Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~ 394 (1146)
T PRK08633 321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK------ELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYL 394 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc------chhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3455666777888899998888888888877643 26788899999999999887776665543 2455556665
Q ss_pred HHHHHH
Q 018552 107 LAIAMG 112 (354)
Q Consensus 107 ~~v~m~ 112 (354)
.++..+
T Consensus 395 ~~~~~~ 400 (1146)
T PRK08633 395 IALVTL 400 (1146)
T ss_pred HHHHHH
Confidence 554433
No 164
>PF14007 YtpI: YtpI-like protein
Probab=83.43 E-value=4.4 Score=31.41 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=48.0
Q ss_pred hcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhcccceeecCC
Q 018552 56 DQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 130 (354)
Q Consensus 56 dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~g~~~y~~~~p 130 (354)
+++...||.|+ ...-==+.|.+|.++.....--.-- .+-...+.++++.+++|+...+.|.|.|++-.|
T Consensus 18 k~~Rs~~p~~k-----~~~~aka~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 18 KYFRSKDPMEK-----KWYSAKANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHhhcCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 45666666433 2222245688888877654433332 455689999999999999999999988877655
No 165
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=82.89 E-value=5 Score=38.85 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY-~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
+.+.++++..+.+++.|..-+.......++ ++++ +....+.+. ...++|..+++.+.+++.|.+|+. .|.+
T Consensus 292 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~ 363 (382)
T PRK11128 292 ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWV 363 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHH
Confidence 455666677777888888777666666654 2211 345566554 456788889999999999999984 4555
Q ss_pred HHHHHHHHH
Q 018552 107 LAIAMGISN 115 (354)
Q Consensus 107 ~~v~m~ial 115 (354)
.++.-++++
T Consensus 364 ~~~~~~~~~ 372 (382)
T PRK11128 364 MALVALPAL 372 (382)
T ss_pred HHHHHHHHH
Confidence 444444443
No 166
>PRK12307 putative sialic acid transporter; Provisional
Probab=82.71 E-value=6 Score=38.68 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=42.8
Q ss_pred CcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 45 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 45 ~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.-+....+..|.++++ ++.+...+.+...++|+.+++.+.+++.+..|+..+..+.
T Consensus 337 ~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~ 393 (426)
T PRK12307 337 GVGGLVPKFLYDYFPLE------VRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFI 393 (426)
T ss_pred cHhHHHHHHHHHhCcHH------HHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 33455566777777642 3677888999999999999999999999999876543333
No 167
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=82.45 E-value=5.6 Score=39.50 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=51.0
Q ss_pred CCCcchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018552 23 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 96 (354)
Q Consensus 23 ~~~~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~ 96 (354)
.++.....+|..+|.+++.|.|..+....++++..-+++...+ |- |.---...+|+.++|.+..++-.
T Consensus 98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~---rl---nl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAF---RL---NLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH---HH---HHHHHhhhhHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999999999764432 22 22222346899999888777644
No 168
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=82.27 E-value=6.9 Score=38.83 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=59.5
Q ss_pred HHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc------hHHHHH
Q 018552 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYIQMEHG------WGSAFG 105 (354)
Q Consensus 33 ~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~-iNiGslia~~~~~~i~~~~g------~~~gF~ 105 (354)
.++..+-++..|.+-.....++.+..+++. +.++=++|... .-+|..++.++.+++-|++| |...|.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 334445677778888888888888887543 33444444442 35788899999999998875 667788
Q ss_pred HHHHHHHHHHHHHHhcc
Q 018552 106 ALAIAMGISNMLFFIGT 122 (354)
Q Consensus 106 i~~v~m~ial~~f~~g~ 122 (354)
++++..++..+.|+...
T Consensus 379 v~a~~~~~~~~~f~~~f 395 (400)
T PF03825_consen 379 VFAVMALVILVLFVILF 395 (400)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888888887653
No 169
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=81.97 E-value=4.8 Score=42.17 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=51.6
Q ss_pred CcchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 018552 25 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 104 (354)
Q Consensus 25 ~~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF 104 (354)
+..+...+..|..+.++|+|... .....++|..+... |..++.+..+..-+...+++.+.-.+..+-+|+|.|
T Consensus 127 tA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~ 199 (599)
T PF06609_consen 127 TAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIF 199 (599)
T ss_pred cCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHH
Confidence 33456678889999999988765 44556788875321 222222222211112222333333334456899999
Q ss_pred HHHHHHHHHHHHHHH
Q 018552 105 GALAIAMGISNMLFF 119 (354)
Q Consensus 105 ~i~~v~m~ial~~f~ 119 (354)
.++++...++++...
T Consensus 200 ~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 200 YIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888776543
No 170
>PRK10429 melibiose:sodium symporter; Provisional
Probab=81.15 E-value=12 Score=37.52 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=47.6
Q ss_pred HHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH-HH---H---hhhchHHHHHHHHH
Q 018552 37 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV-YI---Q---MEHGWGSAFGALAI 109 (354)
Q Consensus 37 ~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~-~i---~---~~~g~~~gF~i~~v 109 (354)
.+..++...+...-.++++|.=++ ++| |.+.+++=....|+|+++...+.. .+ . +..||.....+.++
T Consensus 114 ~l~~~~~t~~~ip~~al~~~lt~~--~~e---R~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~ 188 (473)
T PRK10429 114 ILWGMTYTIMDIPFWSLVPTLTLD--KRE---REQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIA 188 (473)
T ss_pred HHHHHHHHHHcchHHhhhHHhCCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 344566666777777888776654 332 556667666677887666544433 22 1 12357666666666
Q ss_pred HHHHHHHHHHhccc
Q 018552 110 AMGISNMLFFIGTP 123 (354)
Q Consensus 110 ~m~ial~~f~~g~~ 123 (354)
.+.++..+-+.+.|
T Consensus 189 ~~~~~~~~~~~~~~ 202 (473)
T PRK10429 189 FFIVSTIITLRNVH 202 (473)
T ss_pred HHHHHHHHHHcCce
Confidence 66655444443333
No 171
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=81.03 E-value=8.8 Score=37.36 Aligned_cols=73 Identities=14% Similarity=-0.038 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
....+++++.+.++|.|..-|......-+.-+ + ++.+.++.+++..++|..+++.+.+++.+..++.....++
T Consensus 308 ~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~--~-----~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~ 380 (406)
T PRK15402 308 AYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD--V-----SKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFN 380 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc--c-----cccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHH
Confidence 34456677788888888877766555433221 1 3578888888888899999999889887777755433333
No 172
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=80.95 E-value=3.3 Score=41.76 Aligned_cols=83 Identities=7% Similarity=-0.045 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 018552 32 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 111 (354)
Q Consensus 32 ~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m 111 (354)
..+.+.+.+++.++..+...+...+.. ++ .+.....+...+-++|+.+++.+.. .++..+|..+|.+.++.+
T Consensus 351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~---~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~ 422 (476)
T PLN00028 351 AIVVMILFSIFVQAACGATFGIVPFVS----RR---SLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMI 422 (476)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCcccC----hh---hchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHH
Confidence 333444455554444444444443332 21 2455666666666777776665432 233457999999999999
Q ss_pred HHHHHHHHhcc
Q 018552 112 GISNMLFFIGT 122 (354)
Q Consensus 112 ~ial~~f~~g~ 122 (354)
+++.++.++.+
T Consensus 423 ~i~~~~~~~~~ 433 (476)
T PLN00028 423 IACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHhee
Confidence 99888776654
No 173
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=79.67 E-value=8.1 Score=39.24 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=65.0
Q ss_pred HHHHHHhccCcc--------cchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 36 LYITGFGAAGIR--------PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 36 L~lia~GtG~~K--------~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
..++..|.|++- .-++.+.+..|-+.+....+..+..=+.=+.+-|+|-+++.+.-+|+.|.+|-.-.++..
T Consensus 41 k~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~ 120 (538)
T KOG0252|consen 41 KAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKE 120 (538)
T ss_pred HHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHH
Confidence 345666777664 446677778886655322222344445568899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccce
Q 018552 108 AIAMGISNMLFFIGTPLY 125 (354)
Q Consensus 108 ~v~m~ial~~f~~g~~~y 125 (354)
.+.|+++.+ .++-+..
T Consensus 121 liImIi~t~--~~~~s~~ 136 (538)
T KOG0252|consen 121 LIIMIICSA--LSGLSVG 136 (538)
T ss_pred HHHHHHHHH--HhccCCC
Confidence 999999988 5555544
No 174
>PRK10133 L-fucose transporter; Provisional
Probab=79.38 E-value=4.6 Score=40.36 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHH
Q 018552 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 111 (354)
Q Consensus 33 ~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~i~~v~m 111 (354)
..++.++.+|.|.+-|++.+...+.++++.. .-++... +.. +|+.+.+.+.+++.|.+| -+.+|.++.++.
T Consensus 351 ~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~----~as~l~~---~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~ 422 (438)
T PRK10133 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQDTK----YGSSFIV---MTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhc----cchhHHh---HHh-ccchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 4567789999999999999999999876432 1233332 222 466777788899999998 789999888777
Q ss_pred HHHHHHHHhc
Q 018552 112 GISNMLFFIG 121 (354)
Q Consensus 112 ~ial~~f~~g 121 (354)
+..++.=..+
T Consensus 423 ~~~~~~~~~~ 432 (438)
T PRK10133 423 AVIFIFARFR 432 (438)
T ss_pred HHHHHHHHHh
Confidence 6544433333
No 175
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=79.32 E-value=4.7 Score=41.13 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=65.8
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----------h
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----------M 96 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~----------~ 96 (354)
.+.+.+.++..++++|.+++-|...+++.+.-++ +.|......++++.-+|++++..+..+.. .
T Consensus 380 vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~------~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~ 453 (500)
T PRK09584 380 VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ------RLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMS 453 (500)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhh
Confidence 4455677778889999999999999998888543 25788889999888888888866654332 1
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhcccce
Q 018552 97 EHGWGSAFGALAIAMGISNMLFFIGTPLY 125 (354)
Q Consensus 97 ~~g~~~gF~i~~v~m~ial~~f~~g~~~y 125 (354)
.-+++..|..-++..++..++++.-+++.
T Consensus 454 ~~~~~~~f~~~~~~~~~~a~~~~~~~~~~ 482 (500)
T PRK09584 454 LEVYGRVFLQIGIATAVIAVLMLLTAPKL 482 (500)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22477888877777665555554444443
No 176
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=79.05 E-value=7.7 Score=37.82 Aligned_cols=67 Identities=9% Similarity=-0.014 Sum_probs=48.9
Q ss_pred ccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 018552 43 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 117 (354)
Q Consensus 43 tG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~ 117 (354)
.+..-+...++.+|.|+++ .|.....+.+...|+|+.+++.+.+.+.. |....|.+-++..+++.+.
T Consensus 294 ~~~~~~~~~~~~~~~~p~~------~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 294 MLPAYAIIMDWIGKFCDKE------LHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAI 360 (368)
T ss_pred hhhhHHHHHHHHHHhcchh------hcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence 3334455778889999743 37899999999999999999988877764 6556666666666555554
No 177
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=77.74 E-value=62 Score=31.93 Aligned_cols=38 Identities=18% Similarity=0.424 Sum_probs=28.6
Q ss_pred HhHhhccCCCchhhHHHHHHH-HHHHHHHHHHHHhhhhh
Q 018552 281 LEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSII 318 (354)
Q Consensus 281 lE~~~~~aP~~m~s~~~g~~~-l~~~iG~~l~~~l~~~~ 318 (354)
..+..+..|++.++.++|+.. ...++|+.++..+...+
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l 368 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM 368 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345678899999999999996 55677777776666544
No 178
>PRK11043 putative transporter; Provisional
Probab=77.26 E-value=13 Score=36.10 Aligned_cols=70 Identities=11% Similarity=-0.030 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
....++..+++++.|..-|.+.+...++.++ .+.+..+++....+.++.+++.+.+.+.+......++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 366 (401)
T PRK11043 297 VPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-------ATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGSVM 366 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------cChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 3445566778888888888887777777642 245677777776677777788888877765555554443
No 179
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=77.15 E-value=49 Score=33.00 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=35.9
Q ss_pred HHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 018552 280 LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 322 (354)
Q Consensus 280 ~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~~~t 322 (354)
...+..+..|++-||..+|+.....+++-.+|.++....-.++
T Consensus 373 Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 373 LTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 4556788999999999999999999999999888875555545
No 180
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=76.79 E-value=14 Score=36.04 Aligned_cols=81 Identities=7% Similarity=0.033 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 109 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v 109 (354)
+...+.+.+.++|.|.+-+...+..-+. .+++ ..+.+.++...+..|+|..++..+...+ +.+|=+..+.+.++
T Consensus 294 ~~~~~~~~~~G~~~g~~~~~~~~~~q~~-~~~~----~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 367 (393)
T PRK11195 294 LPAYPLLILIGALGGFFVVPMNALLQHR-GHVL----VGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGF 367 (393)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhh-Cccc----ccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHH
Confidence 3344555567788888888888876543 2221 1256788889999999999998887755 56676666666555
Q ss_pred HHHHHHH
Q 018552 110 AMGISNM 116 (354)
Q Consensus 110 ~m~ial~ 116 (354)
+.+++..
T Consensus 368 ~~~~~~~ 374 (393)
T PRK11195 368 GLLVALA 374 (393)
T ss_pred HHHHHHH
Confidence 5554443
No 181
>PRK11462 putative transporter; Provisional
Probab=75.34 E-value=12 Score=37.74 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 018552 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF-FNFFYLSVTVGAIVAFTLVVYIQMEHGW 100 (354)
Q Consensus 31 ~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~-F~~fY~~iNiGslia~~~~~~i~~~~g~ 100 (354)
.+++...+..+|.|+.-+...++.+|.-|.++-+..++++.. |+.+=++.++|..++..+.+++-+..||
T Consensus 320 ~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 320 TMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344455556677777777778889998886543333345544 6777778889998888877776544444
No 182
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=75.25 E-value=30 Score=35.24 Aligned_cols=96 Identities=14% Similarity=0.005 Sum_probs=68.3
Q ss_pred cchHHHHHHHHHHHHHhcc---CcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 018552 26 SWQMLYLYTVLYITGFGAA---GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 102 (354)
Q Consensus 26 ~~~~~~~~~gL~lia~GtG---~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~ 102 (354)
......+...+.-...|.. +.-.++..+.-+.....+..... ..+-++|+=-..++|++++.++.+.+.|.+|...
T Consensus 42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~-~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~ 120 (513)
T KOG0254|consen 42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGE-YSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKK 120 (513)
T ss_pred ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4456667777777888874 44555555555554433332100 1145689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 018552 103 AFGALAIAMGISNMLFFIGT 122 (354)
Q Consensus 103 gF~i~~v~m~ial~~f~~g~ 122 (354)
.+.++.+...++.++....+
T Consensus 121 ~l~~~~~~~~iG~ii~~~a~ 140 (513)
T KOG0254|consen 121 TLLLAVVLFLIGAIIIALAP 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999998888877665543
No 183
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=74.99 E-value=11 Score=38.65 Aligned_cols=82 Identities=16% Similarity=0.081 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH---
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF--- 104 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF--- 104 (354)
+...+.+.-.+.++|.|..- .....+..-++++ +|.+..+++-.+.++|.++++.+.+++. .+||+.=+
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence 46667777788899999987 8888889888743 3778899999999999999999999854 67876544
Q ss_pred HHHHHHHHHHHHH
Q 018552 105 GALAIAMGISNML 117 (354)
Q Consensus 105 ~i~~v~m~ial~~ 117 (354)
.|+...+.+++++
T Consensus 186 ~Isl~s~~~a~~~ 198 (511)
T TIGR00806 186 IISLVFMTFSVFL 198 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555543
No 184
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=74.97 E-value=13 Score=27.88 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhcccceeecC
Q 018552 71 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL 129 (354)
Q Consensus 71 s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~g~~~y~~~~ 129 (354)
..-.++...+-+++++|.+ ++|+.+++ +..+.+-+++.++++++.+--.+.|++.|
T Consensus 8 ~ae~l~~~il~~~~iisfi-~Gy~~q~~--~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p 63 (76)
T PF06645_consen 8 LAEKLMQYILIISAIISFI-VGYITQSF--SYTFYIYGAGVVLTLLVVVPPWPFYNRHP 63 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHhheeCCcHhhcCCc
Confidence 4456667788888887754 68888755 45777777788888888887777776544
No 185
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=74.48 E-value=1.8 Score=44.49 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=67.0
Q ss_pred HHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHH
Q 018552 35 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGI 113 (354)
Q Consensus 35 gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~i~~v~m~i 113 (354)
--.+.++..|.+-.+.+....|..+.+ +..++|.+..+...+++++++-+++++.|..| |...|..+++.+++
T Consensus 394 ~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~ 467 (509)
T KOG2504|consen 394 FSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL 467 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence 334556667777777777778888754 37899999999999999999999999998887 99999999999999
Q ss_pred HHHHHHhcc
Q 018552 114 SNMLFFIGT 122 (354)
Q Consensus 114 al~~f~~g~ 122 (354)
+.+..+.-+
T Consensus 468 s~~~~~~~~ 476 (509)
T KOG2504|consen 468 SAVLLLILR 476 (509)
T ss_pred HHHHHHHhH
Confidence 987766544
No 186
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=74.28 E-value=42 Score=33.57 Aligned_cols=50 Identities=14% Similarity=-0.018 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh
Q 018552 70 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 70 ~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
.-=|..=-+...+|..++.++++++-+ .+-+..|.++.+..++.+++.+.
T Consensus 137 ~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 137 GFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHH
Confidence 334555567788999999999999885 56667888766544444443333
No 187
>TIGR00895 2A0115 benzoate transport.
Probab=73.86 E-value=3.9 Score=38.95 Aligned_cols=61 Identities=18% Similarity=0.084 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 94 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i 94 (354)
+...+++...+.+++.|+.-+...+...|.++++ .+...+++++...++|..+++.+.+++
T Consensus 337 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTA------IRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH------HHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 3455666777888888888999999999998642 367889999999999999999887765
No 188
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=73.85 E-value=14 Score=36.38 Aligned_cols=67 Identities=7% Similarity=-0.063 Sum_probs=42.7
Q ss_pred ccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 018552 47 RPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 119 (354)
Q Consensus 47 K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNi-Gslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~ 119 (354)
-+.......|.|+++ .|..++.+-|...|+ ++..++.+..++.+.-.|...|...++..+++.+..+
T Consensus 354 ~~~~~~~~~e~fp~~------~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 354 TSISGILKAEMFPAQ------VRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHHCCCC------ccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 345667788999853 267888888876665 2334777777775443366667666666666655444
No 189
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=73.78 E-value=15 Score=37.51 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hchHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--HGWGSAFG 105 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~--~g~~~gF~ 105 (354)
+...+++|-.+.++|.|++-..++.+++|-=++ +.|...-+.+...+++|.+++..+ .+.-++ ++|+..++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~------~~RG~l~~~~~l~~~~Gi~~~~~~-~~~~~~~~~~Wr~~~~ 213 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA------HIRGTLVSLYQLFITIGILLGYCI-NYGTSKVYAGWRIPLG 213 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh------hhhHHHHHHHHHHHHHHHHHHHHH-hhhhccCCccHHHHHH
Confidence 678889999999999999986666666554432 246777888889999999998544 444443 48998887
Q ss_pred HHHHHHHHHHHH
Q 018552 106 ALAIAMGISNML 117 (354)
Q Consensus 106 i~~v~m~ial~~ 117 (354)
+..+.-++-.+.
T Consensus 214 ~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 214 LALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHHH
Confidence 766665544443
No 190
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=73.33 E-value=16 Score=37.30 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhc--cCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 29 MLYLYTVLYITGFGA--AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 29 ~~~~~~gL~lia~Gt--G~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
+-+..+++..++-|. -.+..---..+.++|++ +. .+.+++.-+...+|+-+++..+..+.+-+++||..+-.+
T Consensus 264 ~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~--~~---~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i 338 (472)
T TIGR00769 264 PYILDLALLVIAYGISINLVEVTWKSKLKAQYPS--PN---EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALI 338 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444455554444332 22333334566788853 32 378999999999999998777777999999999877766
Q ss_pred HHHHHHHHHHHH
Q 018552 107 LAIAMGISNMLF 118 (354)
Q Consensus 107 ~~v~m~ial~~f 118 (354)
.-+.+.++.+.|
T Consensus 339 ~Pii~lit~~~F 350 (472)
T TIGR00769 339 TPLVMLLTGVAF 350 (472)
T ss_pred HHHHHHHHHHHH
Confidence 666665544333
No 191
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=72.51 E-value=19 Score=34.27 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNi-Gslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
..++....+.++|.+..-+.......|.+++ ++.+..+.+...... |++.+++ .+.+.++.+|...|....
T Consensus 301 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~~ 372 (385)
T TIGR00710 301 AMIIGPMMFVGIGNSMISSIAMAYALEDFPH-------VAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLSCLV 372 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-------cchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHHHHHH
Confidence 3444455667788888888887777766542 144566666665554 5554444 456666666665555544
Q ss_pred HHHH
Q 018552 109 IAMG 112 (354)
Q Consensus 109 v~m~ 112 (354)
....
T Consensus 373 ~~~~ 376 (385)
T TIGR00710 373 LAVV 376 (385)
T ss_pred HHHH
Confidence 4433
No 192
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=71.03 E-value=1.1 Score=46.29 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------------
Q 018552 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------ 96 (354)
Q Consensus 29 ~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~------------ 96 (354)
..+|++|-.+.++|..-+ .++|-.-.||+-++ ++-.-+..++|..-.+|..+|.++.++.-+
T Consensus 141 ~~~f~~gq~l~GiG~~pl----~tLG~tYiDDnv~~--~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~ 214 (539)
T PF03137_consen 141 FYVFILGQLLIGIGATPL----YTLGITYIDDNVSK--KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDG 214 (539)
T ss_dssp -----------SSS------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccCC----ccceeeeecccccc--ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccC
Confidence 566777777777776654 45555555554432 223467788888888888887766554311
Q ss_pred ---------hhc-hHHHHHHHHHHHHHHHHHHHhc
Q 018552 97 ---------EHG-WGSAFGALAIAMGISNMLFFIG 121 (354)
Q Consensus 97 ---------~~g-~~~gF~i~~v~m~ial~~f~~g 121 (354)
.+| ||+||.++++..++..+.++.-
T Consensus 215 ~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 215 VGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp -----------------------------------
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 144 9999999999988777766553
No 193
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=70.99 E-value=11 Score=38.35 Aligned_cols=93 Identities=9% Similarity=0.152 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----------h
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------E 97 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~----------~ 97 (354)
+.+.+.....+.++|.+++-|...++..+.-+++ .+...-..++...++|+.++..+..+.+. .
T Consensus 378 s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~------~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~ 451 (489)
T PRK10207 378 SPWFIVLVYLFQSLGELFISALGLAMIAALVPQH------LMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETL 451 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhh
Confidence 4556667788899999999998888888876532 36778888999999999998777654421 1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhccccee
Q 018552 98 HGWGSAFGALAIAMGISNMLFFIGTPLYR 126 (354)
Q Consensus 98 ~g~~~gF~i~~v~m~ial~~f~~g~~~y~ 126 (354)
-.+..-|...++..++..++++...++++
T Consensus 452 ~~~~~~f~~~~~~~~~~~v~~~~~~~~~~ 480 (489)
T PRK10207 452 PVYTNVFGKIGLVTLGVAVVMALMVPWLN 480 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12556677666666655555555444443
No 194
>PTZ00207 hypothetical protein; Provisional
Probab=69.03 E-value=22 Score=37.26 Aligned_cols=77 Identities=8% Similarity=-0.057 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFG 105 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGsli-a~~~~~~i~~~~g~~~gF~ 105 (354)
.+.+.+++...+.++|.|.+-+.......+-|++ +|.....+...+.++|+.+ +++...++.+ +|+..|.
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 3577778888888899988888778888888852 2578899999999999975 5655566654 3555555
Q ss_pred HHHHHHH
Q 018552 106 ALAIAMG 112 (354)
Q Consensus 106 i~~v~m~ 112 (354)
+.++..+
T Consensus 189 ~l~vl~~ 195 (591)
T PTZ00207 189 FLMSFAL 195 (591)
T ss_pred HHHHHHH
Confidence 4444433
No 195
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=65.79 E-value=29 Score=34.60 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=58.3
Q ss_pred HHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---hHHHHHHHHHHHHHHH
Q 018552 39 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISN 115 (354)
Q Consensus 39 ia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g---~~~gF~i~~v~m~ial 115 (354)
+++|-|-|-. --+..+.-|++++ +..+..++= .-|+|..+..++.|.+....| |+..-.+..+.++++.
T Consensus 115 ~G~~GasFav-~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~ 186 (417)
T COG2223 115 LGLAGASFAV-GMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAA 186 (417)
T ss_pred Hhcccceehc-ccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444333332 2345566776543 456666666 899999999999999999999 9999999999999988
Q ss_pred HHHHhcccc
Q 018552 116 MLFFIGTPL 124 (354)
Q Consensus 116 ~~f~~g~~~ 124 (354)
+.+++..+-
T Consensus 187 v~~~~~~~d 195 (417)
T COG2223 187 VLAWLGMND 195 (417)
T ss_pred HHHHHHhCC
Confidence 888877654
No 196
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=65.73 E-value=11 Score=37.16 Aligned_cols=74 Identities=8% Similarity=0.049 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh------chHHHHHH
Q 018552 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGA 106 (354)
Q Consensus 33 ~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~------g~~~gF~i 106 (354)
...+.++.+..+.+-|.+.++.-+..+++. ...-...-+++ +|..+.|.+.+++.|++ |++.+|.+
T Consensus 325 ~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~l~~~~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~ 396 (410)
T TIGR00885 325 LYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAGLVMAI-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFIL 396 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHHHHHH-hccchHHHHHHHHHHHhcccccCccchHHHH
Confidence 345555666666666999999999997442 23334455566 99999999999999965 58999999
Q ss_pred HHHHHHHH
Q 018552 107 LAIAMGIS 114 (354)
Q Consensus 107 ~~v~m~ia 114 (354)
+.++.+.-
T Consensus 397 ~~~~~~~~ 404 (410)
T TIGR00885 397 PLLCFAVI 404 (410)
T ss_pred HHHHHHHH
Confidence 99888643
No 197
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=64.86 E-value=37 Score=34.37 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+...+.+.-.+.+++.++.-.+...+++|.+.++. |...-++ +.....|+.+++....|+-+ +|++-+.+
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~ 239 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWI 239 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 345566666677788888889999999999997543 4555555 77777788888888888877 99999999
Q ss_pred HHHHHHHHHHH
Q 018552 107 LAIAMGISNML 117 (354)
Q Consensus 107 ~~v~m~ial~~ 117 (354)
..+..++.++.
T Consensus 240 ~~~~~~~~~~~ 250 (521)
T KOG0255|consen 240 ISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHH
Confidence 87777666555
No 198
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=63.40 E-value=14 Score=35.05 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=44.7
Q ss_pred HHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018552 36 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 99 (354)
Q Consensus 36 L~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g 99 (354)
..+.++|.|..-|...+...+..++.+ ++...+...+...++|..+++.+.+++.|++|
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888887777776554321 24566777777888999999999999998876
No 199
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=62.96 E-value=17 Score=34.91 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---hHHHHHHHHH
Q 018552 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAI 109 (354)
Q Consensus 33 ~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g---~~~gF~i~~v 109 (354)
|.++.++++....+-...-+.++-..+++ ++..+|..-|-.-|+|-.+.+++++.|.+.-| |-=.|.+...
T Consensus 356 y~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 356 YTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 55666666665554444555555555432 47889999999999999999999999987654 6667777777
Q ss_pred HHHHHHHHH
Q 018552 110 AMGISNMLF 118 (354)
Q Consensus 110 ~m~ial~~f 118 (354)
.|.+..+..
T Consensus 430 ~~aL~svgi 438 (459)
T KOG4686|consen 430 LMALTSVGI 438 (459)
T ss_pred HHHHHHHHH
Confidence 776655443
No 200
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=62.33 E-value=40 Score=31.33 Aligned_cols=76 Identities=12% Similarity=0.316 Sum_probs=52.1
Q ss_pred HHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 018552 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 112 (354)
Q Consensus 33 ~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ 112 (354)
+++..+..++.+.+-+..+....++++-++. -.++......++..++....+++.|++|.+..+.++.+...
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~ 73 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPS--------QIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA 73 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSH--------CHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence 4566667777777777777566777764332 14444555556667777778999999999888888888888
Q ss_pred HHHH
Q 018552 113 ISNM 116 (354)
Q Consensus 113 ial~ 116 (354)
++..
T Consensus 74 ~~~~ 77 (352)
T PF07690_consen 74 LGSL 77 (352)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 8733
No 201
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=60.57 E-value=33 Score=34.97 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018552 52 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 95 (354)
Q Consensus 52 ~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~ 95 (354)
++..|.++.++ -.++|..+..+-|+|.++++.++.++.
T Consensus 152 ~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 152 GFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778877543 469999999999999999999888875
No 202
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.86 E-value=14 Score=36.81 Aligned_cols=97 Identities=9% Similarity=0.015 Sum_probs=65.9
Q ss_pred CCcchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 018552 24 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSA 103 (354)
Q Consensus 24 ~~~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~g 103 (354)
|-.....-+.+-..-+++|-|.....+.+..+...|.....+-+--.+.+.++=.+..+|.+++|++.+.+.++.||.|.
T Consensus 356 P~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl 435 (464)
T KOG3764|consen 356 PFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWL 435 (464)
T ss_pred HhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHH
Confidence 44445555666666677788888888888888888754321111234567777788999999999999999999999655
Q ss_pred H-HHHHHHHHHHHHHHHh
Q 018552 104 F-GALAIAMGISNMLFFI 120 (354)
Q Consensus 104 F-~i~~v~m~ial~~f~~ 120 (354)
- .+...-+.-+.+.++.
T Consensus 436 ~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 436 MTIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4 4444444445554444
No 203
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=55.55 E-value=25 Score=34.80 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=31.4
Q ss_pred HHHhHhhccCCCchhhHHHHHHHH-HHHHHHHHHHHhhhhh
Q 018552 279 GLLEFLYEEAPDAMKSIGSAYAAL-AGGLGCFAASILNSII 318 (354)
Q Consensus 279 ~~lE~~~~~aP~~m~s~~~g~~~l-~~~iG~~l~~~l~~~~ 318 (354)
+...+..+.+|+++|+.++|++.. ..|+|..+++.+...+
T Consensus 321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l 361 (400)
T PF03825_consen 321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL 361 (400)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567788899999999999999875 4577777777665533
No 204
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.90 E-value=41 Score=26.24 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhcccceeec
Q 018552 73 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 128 (354)
Q Consensus 73 F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~g~~~y~~~ 128 (354)
--++-..+.+|+++|.+ .++.++..+|.+ | +-+++.++++++-+--.++|++.
T Consensus 25 Er~~q~ilti~aiVg~i-~Gf~~Qqls~tv-y-~vg~~~v~t~li~LPpwP~y~rn 77 (101)
T KOG4112|consen 25 ERFQQLILTIGAIVGFI-YGFAQQQLSVTV-Y-IVGAGFVFTLLITLPPWPWYRRN 77 (101)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-H-HHHHHHHHHHHhcCCCchhhhcC
Confidence 34557789999998865 478888787733 2 22333444555555556666553
No 205
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=54.36 E-value=62 Score=24.73 Aligned_cols=9 Identities=0% Similarity=-0.193 Sum_probs=6.2
Q ss_pred CcchHHHHH
Q 018552 340 DTSTGLSRS 348 (354)
Q Consensus 340 ~~ld~~~~~ 348 (354)
.=-|+|||+
T Consensus 68 ~VaDRYwWv 76 (89)
T PF10762_consen 68 KVADRYWWV 76 (89)
T ss_pred hhhhhHHHH
Confidence 345788886
No 206
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=52.47 E-value=24 Score=34.95 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 98 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~ 98 (354)
+...+++.+.+.++|.|..-+.......+.++++ ++..+...+.+.-++|+.+++.+.+.+.++.
T Consensus 347 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPH------KIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677788888887776666666665422 3677888888888999998888877776654
No 207
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=52.38 E-value=83 Score=27.47 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHh--hhchHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQM--EHGWGSAF 104 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~-~iNiGslia~~~~~~i~~--~~g~~~gF 104 (354)
....+.+...+.+++.|..-|...++.+|.+++ . .++...++++.. ..++|..+++.+.+++.. ..+|+..|
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF 167 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 344455555557788888999999999999986 2 236666777777 577788887766555544 36788866
Q ss_pred HHHHHHHHH
Q 018552 105 GALAIAMGI 113 (354)
Q Consensus 105 ~i~~v~m~i 113 (354)
.+..+....
T Consensus 168 ~~~~~~~~~ 176 (338)
T COG0477 168 LLAALLGLL 176 (338)
T ss_pred HHHHHHHHH
Confidence 666555443
No 208
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=51.82 E-value=57 Score=33.43 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=48.0
Q ss_pred cccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-HHHHHHHHHHH
Q 018552 46 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL-AIAMGISNMLF 118 (354)
Q Consensus 46 ~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~-~v~m~ial~~f 118 (354)
+...--..+.++|++.+ ...++++-|.-.+++-+++-+++.+.+-++.||..+-.+. .+.++.++..|
T Consensus 299 vE~~wK~~lk~~~~~~~-----~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~~~FF 367 (491)
T PF03219_consen 299 VEVVWKSQLKQLYPDPN-----DYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITGLLFF 367 (491)
T ss_pred HHHHHHHHHHHHCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHH
Confidence 33344455667886443 3688999999999998888888889999999997776664 54444444443
No 209
>PRK10692 hypothetical protein; Provisional
Probab=50.94 E-value=79 Score=24.35 Aligned_cols=8 Identities=0% Similarity=-0.238 Sum_probs=5.5
Q ss_pred cchHHHHH
Q 018552 341 TSTGLSRS 348 (354)
Q Consensus 341 ~ld~~~~~ 348 (354)
=-|+|+|+
T Consensus 69 VaDRYwwv 76 (92)
T PRK10692 69 VADRYWWV 76 (92)
T ss_pred hhhhHHHH
Confidence 35778776
No 210
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=50.63 E-value=42 Score=33.69 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=65.8
Q ss_pred HHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHH
Q 018552 37 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISN 115 (354)
Q Consensus 37 ~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~-g~~~gF~i~~v~m~ial 115 (354)
.++++-.|+..+..-++.++..++++. .++|..|-..--..++++|...+.+-+.. .-+.|+..-.+.+.+++
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~------~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl 422 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKE------GRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL 422 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccc------cceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence 568899999999999999999987654 58999999999999999999988887655 46788888888888888
Q ss_pred HHHHhc
Q 018552 116 MLFFIG 121 (354)
Q Consensus 116 ~~f~~g 121 (354)
++++.-
T Consensus 423 ~~L~~v 428 (438)
T COG2270 423 LLLLRV 428 (438)
T ss_pred hhEEee
Confidence 766543
No 211
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.48 E-value=17 Score=35.24 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=38.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 018552 255 PRGASQLQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 318 (354)
Q Consensus 255 ~~~~s~l~ki~iG~~l~~ls~~~a~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~ 318 (354)
-.+|+|+..+.+|.++..+.+.+ ..+-+=|..|| .|+|+++.+.|++++.+++-++
T Consensus 182 ~yep~~~~~~vl~~~fvl~tlai-----vLFPLWP~~mR---~gvyY~sig~~gfl~~IlvLaI 237 (372)
T KOG2927|consen 182 IYEPRPLMWQVLGVLFVLVTLAI-----VLFPLWPRRMR---QGVYYLSIGAGGFLAFILVLAI 237 (372)
T ss_pred eccCCchhHHHHHHHHHHHHHHH-----HhcccCcHHHh---cceeeeecchhHHHHHHHHHHH
Confidence 45688888888887764433322 23445577666 6889999988888887666543
No 212
>PTZ00207 hypothetical protein; Provisional
Probab=48.34 E-value=58 Score=34.24 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhh-----------
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME----------- 97 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia-~~~~~~i~~~----------- 97 (354)
..+|++-+++++++|..-+...+...+.|. +|. ..-||.-+.+.-+|+++= -.+.+++-|+
T Consensus 453 ~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~------g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~ 525 (591)
T PTZ00207 453 AALPLPYFIAAFANGFMAATIALVTRTIFA-KDP------AKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCT 525 (591)
T ss_pred cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cch------HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeC
Confidence 579999999999999999999999999999 554 466888888999998874 3455655321
Q ss_pred --hchHHHHHHHHHHHHHHHHH
Q 018552 98 --HGWGSAFGALAIAMGISNML 117 (354)
Q Consensus 98 --~g~~~gF~i~~v~m~ial~~ 117 (354)
..++..|.+.++.-++|.+.
T Consensus 526 G~~C~~~~~~v~~~~~~~g~~~ 547 (591)
T PTZ00207 526 ERVCVVMPLAFLLGLSFLAFIT 547 (591)
T ss_pred CceeeHhHHHHHHHHHHHHHHH
Confidence 35889997776666665554
No 213
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=48.25 E-value=76 Score=31.14 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 018552 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 110 (354)
Q Consensus 31 ~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~ 110 (354)
.+++++.+..+|.|..-|++.+..-.|.+..+. +..+.+ ......+..++....+|+.++ +=.++|.+..+.
T Consensus 314 ~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G----~a~a~~---~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 385 (413)
T PRK15403 314 WSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKG----TVSASL---NMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV 385 (413)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCc----HHHHHH---HHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence 357788888999999999998654444443222 123333 444444555566666777554 445566555555
Q ss_pred HHHHHHHH
Q 018552 111 MGISNMLF 118 (354)
Q Consensus 111 m~ial~~f 118 (354)
..+.+...
T Consensus 386 ~~~~~~~~ 393 (413)
T PRK15403 386 AGVIVVFT 393 (413)
T ss_pred HHHHHHHH
Confidence 44444433
No 214
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=47.82 E-value=31 Score=35.32 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=28.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018552 289 PDAMKSIGSAYAALAGGLGCFAASILNSIIKS 320 (354)
Q Consensus 289 P~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~~ 320 (354)
.++.++..||+|+...++|+.+|+.++..+.+
T Consensus 164 ~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 164 GKSERGLRMGIWYASASLGNIFGGLIAYGVFK 195 (495)
T ss_pred ChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence 67889999999999999999999999988644
No 215
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=47.46 E-value=80 Score=24.35 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=31.4
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018552 283 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 319 (354)
Q Consensus 283 ~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~ 319 (354)
+..+..|++.++..++++.....+|..++..+.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 75 LIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 4567889999999999999999999998888876653
No 216
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=46.27 E-value=29 Score=35.21 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHh
Q 018552 70 DRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 70 ~s~F~~fY~~iNiGslia~~~~~~i~~---~~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
.-....--+..++..+++|.+++++-+ .-.|+..|.+.++.++++.++|.+
T Consensus 392 ~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 392 GFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 455555666777888888888877763 248999999999999999988865
No 217
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=45.76 E-value=1.2e+02 Score=29.81 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=69.1
Q ss_pred CCcCCCcchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 018552 20 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT-VGAIVAFTLVVYIQMEH 98 (354)
Q Consensus 20 ~c~~~~~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iN-iGslia~~~~~~i~~~~ 98 (354)
.|..-...+...+++|=.+-+++|-.+-..-.+-...+.++.+-++ +.+..-|+.--+..| +=+..+.++.-++.+..
T Consensus 112 scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~ 190 (354)
T PF05631_consen 112 SCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWF 190 (354)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence 4544555678889999999999999988877776666666555321 234555654443333 44555555666667766
Q ss_pred ch--HHHHHHHHHHHHHHHHHHHhccc
Q 018552 99 GW--GSAFGALAIAMGISNMLFFIGTP 123 (354)
Q Consensus 99 g~--~~gF~i~~v~m~ial~~f~~g~~ 123 (354)
|. ...|..+.+..+++.++.....+
T Consensus 191 ~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 191 GFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 55 78899999999888876655443
No 218
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=43.61 E-value=8.2 Score=39.08 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=35.1
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 018552 283 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 322 (354)
Q Consensus 283 ~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~~~t 322 (354)
++.+..|+..||.++++|+++.-+|+.+|....+.+.+.|
T Consensus 145 ~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 145 LIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 5678899999999999999999999999888887776655
No 219
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=43.16 E-value=80 Score=31.79 Aligned_cols=72 Identities=13% Similarity=-0.088 Sum_probs=47.2
Q ss_pred HHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hHHHHHHHHHHH
Q 018552 37 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-----WGSAFGALAIAM 111 (354)
Q Consensus 37 ~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-----~~~gF~i~~v~m 111 (354)
.+..++.|..-.....+..+.-+++. ....|.++....|+|..++..+.+++.+..| |+.-|.+-.++.
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~ 432 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHS 432 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHH
Confidence 33444444444444555555554432 4688999999999999999999999998888 555554444443
Q ss_pred HHH
Q 018552 112 GIS 114 (354)
Q Consensus 112 ~ia 114 (354)
+..
T Consensus 433 ~~~ 435 (468)
T TIGR00788 433 LAP 435 (468)
T ss_pred HHH
Confidence 333
No 220
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=42.69 E-value=45 Score=33.66 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 96 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~ 96 (354)
...++.+.+.++|.|..-+.......+..++++ +......+.+.-++|..+++.+.+.+-+
T Consensus 352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888888877777777766654332 4567788888889998888877777654
No 221
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=42.31 E-value=3.8e+02 Score=27.09 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=38.2
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 018552 283 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 323 (354)
Q Consensus 283 ~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~~~t~ 323 (354)
++.+.+|++-.+.-.|+|-++.-.++.++..+++++-.+|+
T Consensus 365 y~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 365 YLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred HHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999988775
No 222
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=41.65 E-value=71 Score=32.52 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 018552 26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD-RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 100 (354)
Q Consensus 26 ~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~-s~F~~fY~~iNiGslia~~~~~~i~~~~g~ 100 (354)
..+.+++++.+.+..+|++..-+-.-++.+|--|-++-+...|++ -.|+.+=+..=+|..++..+.+++-..+||
T Consensus 324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456788888888899999999999999999998865543333344 567777778888888888777776554443
No 223
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=39.83 E-value=1.4e+02 Score=28.05 Aligned_cols=48 Identities=6% Similarity=-0.006 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh
Q 018552 73 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 73 F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
.++.+....+|..++....+++.|++|.+..+.+..+.+.++.+.+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 466666777788888888899999999888787777777666555443
No 224
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=39.46 E-value=1.2e+02 Score=31.17 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhc
Q 018552 68 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 121 (354)
Q Consensus 68 ~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~g 121 (354)
..+-..+..--+.-+|+++|....+.+.|++|-..++.++.+...++.+.+...
T Consensus 57 ~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s 110 (485)
T KOG0569|consen 57 TLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLS 110 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666778888888889999999999888888888777776655443
No 225
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=36.32 E-value=78 Score=32.54 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=59.8
Q ss_pred chHHHHHHHHHH-HHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 018552 27 WQMLYLYTVLYI-TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 105 (354)
Q Consensus 27 ~~~~~~~~gL~l-ia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~ 105 (354)
.+.+.+|+.... .++|.|..-......++.-|++. |..+=.+=-.+--+|.++=+.+.-++-+++||+.++.
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l 204 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALL 204 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHH
Confidence 346677777665 67999998888888888766643 2333323334455666666667778889999999999
Q ss_pred HHHHHHHHHHHHHHhccc
Q 018552 106 ALAIAMGISNMLFFIGTP 123 (354)
Q Consensus 106 i~~v~m~ial~~f~~g~~ 123 (354)
+=+..++-.++.-..-++
T Consensus 205 ~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 205 IFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 887777444443343333
No 226
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=35.70 E-value=33 Score=33.22 Aligned_cols=86 Identities=9% Similarity=0.007 Sum_probs=55.4
Q ss_pred HHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhh-hccccccCCC--------CCchHHHHHHHHHHHHHHHHHHHHhH
Q 018552 213 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGHPRG--------ASQLQRVGIGLAVSILSVIWAGLLEF 283 (354)
Q Consensus 213 ~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~-md~~i~~~~~--------~s~l~ki~iG~~l~~ls~~~a~~lE~ 283 (354)
+.++.++.+...+....+|+.++|..+..+++... .++.-+.-.+ .+.+..+.+.+++..+.+++...++
T Consensus 202 ~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~- 280 (372)
T PF00854_consen 202 QRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR- 280 (372)
T ss_dssp TTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTT-
T ss_pred ceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhh-
Confidence 55678899999999999999999999999988875 4532122222 2456678888887777777765555
Q ss_pred hhccCCCchhhHHHHHH
Q 018552 284 LYEEAPDAMKSIGSAYA 300 (354)
Q Consensus 284 ~~~~aP~~m~s~~~g~~ 300 (354)
.+.-|...+.+..|+.
T Consensus 281 -~~~~~~~~~k~~~G~~ 296 (372)
T PF00854_consen 281 -RGIQPSPPQKFGIGMV 296 (372)
T ss_dssp -T------HHHHHHH-H
T ss_pred -hcccchhhhhhhHHHH
Confidence 3333444455555533
No 227
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=34.20 E-value=4.6e+02 Score=26.79 Aligned_cols=77 Identities=10% Similarity=0.134 Sum_probs=47.0
Q ss_pred HHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------hchHHHHHHHH
Q 018552 36 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALA 108 (354)
Q Consensus 36 L~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~-------~g~~~gF~i~~ 108 (354)
..+..++.-.+.---.+++++.=+ ||+ +|.+..+|-.++.|+|.++..++.+.+... .||...=.+-+
T Consensus 119 Y~l~~l~YT~vniPy~al~~~iT~--d~~---ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~ 193 (467)
T COG2211 119 YMLLGLGYTLVNIPYGALGPEITQ--DPQ---ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLG 193 (467)
T ss_pred HHHHHHHHHheeCchhhcchhhcC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 344445555555555566666554 454 377888899999999988887777666432 35555555444
Q ss_pred HHHHHHHHH
Q 018552 109 IAMGISNML 117 (354)
Q Consensus 109 v~m~ial~~ 117 (354)
+...++++.
T Consensus 194 vi~~i~~l~ 202 (467)
T COG2211 194 VIGVILLLF 202 (467)
T ss_pred HHHHHHHHH
Confidence 444444443
No 228
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=34.01 E-value=78 Score=32.45 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=30.9
Q ss_pred hhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018552 52 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 96 (354)
Q Consensus 52 ~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~ 96 (354)
.+..|.++.++ -.++|..+..+-|+|.++|..++.++.+
T Consensus 167 ~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 167 GFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555333 4699999999999999999999888877
No 229
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=31.60 E-value=69 Score=20.53 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=17.4
Q ss_pred CCCcCCCcchHHHHHHHHHHHHH
Q 018552 19 GSCEPAKSWQMLYLYTVLYITGF 41 (354)
Q Consensus 19 ~~c~~~~~~~~~~~~~gL~lia~ 41 (354)
++-.+|.....+.+|+||.+|-+
T Consensus 6 NpN~q~VELNRTSLy~GlLlifv 28 (39)
T PRK00753 6 NPNKQPVELNRTSLYLGLLLVFV 28 (39)
T ss_pred CCCCCCceechhhHHHHHHHHHH
Confidence 34456777889999999988754
No 230
>CHL00038 psbL photosystem II protein L
Probab=31.41 E-value=70 Score=20.40 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=17.9
Q ss_pred CCCCcCCCcchHHHHHHHHHHHHH
Q 018552 18 LGSCEPAKSWQMLYLYTVLYITGF 41 (354)
Q Consensus 18 ~~~c~~~~~~~~~~~~~gL~lia~ 41 (354)
+++=+++.....+.+|+||.+|-+
T Consensus 4 ~NPN~q~VELNRTSLy~GLLlifv 27 (38)
T CHL00038 4 SNPNKQNVELNRTSLYWGLLLIFV 27 (38)
T ss_pred CCCCCCccchhhhhHHHHHHHHHH
Confidence 344456777889999999988754
No 231
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=28.73 E-value=1.6e+02 Score=29.47 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHH---------HHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 018552 265 GIGLAVSILSVIWA---------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 316 (354)
Q Consensus 265 ~iG~~l~~ls~~~a---------~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~ 316 (354)
..|..+++++|+.. .++.+..|.+||+-|+...++-|...=+|..+++.+.+
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g 146 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFG 146 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666543 46778889999999999999888887777777766654
No 232
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=27.60 E-value=3e+02 Score=26.25 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 018552 79 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 115 (354)
Q Consensus 79 ~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial 115 (354)
...++..+++.+.+++.+..|+...+.+.+...+..+
T Consensus 331 ~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 367 (392)
T PRK10473 331 TLGIAQVCGSSLWIWLAAVLGISAWNMLIGILIACSI 367 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 3456666777777888888887665555554443333
No 233
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=26.86 E-value=1.8e+02 Score=30.07 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=33.9
Q ss_pred HhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 018552 281 LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 318 (354)
Q Consensus 281 lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~ 318 (354)
..++++-.|++.|+.++|++..+..+|..+++.++++.
T Consensus 136 ~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 136 SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567889999999999999999999999999999883
No 234
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=26.24 E-value=2.9e+02 Score=24.57 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=25.0
Q ss_pred CcccCCCCCCCcccccCCCCCcCCCcchHHHHHHHHHHHHHhc
Q 018552 1 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGA 43 (354)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~gL~lia~Gt 43 (354)
||-|.-|++-||+. |.+...+++-++++++..|-
T Consensus 1 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 34 (190)
T PRK09597 1 MKKFLFKQKFCESL---------PKSFSKTLLALSLGLILLGI 34 (190)
T ss_pred CccchHHHHHHHhc---------cchhHHHHHHHHHHHHHHHh
Confidence 67788888888883 55566677777877776654
No 235
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=26.07 E-value=3.6e+02 Score=25.34 Aligned_cols=80 Identities=13% Similarity=-0.006 Sum_probs=36.3
Q ss_pred HHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 018552 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 111 (354)
Q Consensus 33 ~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~-iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m 111 (354)
.++..+...+.+..-++......|.+++ .+.+..+.+... ..+|++++..+. ..... ++...+.+.+++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~g~~~g~~~~-~~~~~-~~~~~~~~~~~~~ 361 (377)
T PRK11102 291 VVGVAAFVGCVSMISSNAMAVILDEFPH-------MAGTASSLAGTLRFGIGAIVGALLS-LAPFT-SAWPMVWSMAFCS 361 (377)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccccc-------cchHHHHHHHHHHHHHHHHHHHHHH-hccCC-ChHHHHHHHHHHH
Confidence 3344444555555555555555555432 133344433222 235666665543 22222 2333344445555
Q ss_pred HHHHHHHHhc
Q 018552 112 GISNMLFFIG 121 (354)
Q Consensus 112 ~ial~~f~~g 121 (354)
+++++.++..
T Consensus 362 ~~~~~~~~~~ 371 (377)
T PRK11102 362 ILSILFYLYA 371 (377)
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 236
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=24.68 E-value=38 Score=34.02 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh
Q 018552 82 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 82 iGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
+|+..+....+++.|++||..+|.+-.++-+++.+.++.
T Consensus 394 ~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 394 IGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred hhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 488888888899988999999999888887777776654
No 237
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=23.88 E-value=9.5 Score=37.61 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=49.3
Q ss_pred CcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 018552 45 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 116 (354)
Q Consensus 45 ~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~ 116 (354)
+.-|....+.+|.|+.+. |..+..+.+...++|+++++.+.+++.++.+-...|.+.++.++++.+
T Consensus 365 g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i 430 (451)
T PF00083_consen 365 GWGPLPWIYTAELFPTKV------RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAII 430 (451)
T ss_pred cccccccccccccccccc------cccccccccccccccccccccccccccccccccccchhhHHHHHHHHh
Confidence 455777788899998543 678888999999999999999999999888744555555555544444
No 238
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=23.06 E-value=1.4e+02 Score=27.22 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=29.7
Q ss_pred CCCchHHHH--HHHHHHHHHHHHHHHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 018552 257 GASQLQRVG--IGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 315 (354)
Q Consensus 257 ~~s~l~ki~--iG~~l~~ls~~~a~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~ 315 (354)
+++++.... +++++++++++ .+-.-|..|| .|+|+++.++..+++.+++
T Consensus 105 e~~~~~~~l~~~~~~~~v~a~~-------lFPlWP~~~r---~gv~YlS~~~lgll~~~~~ 155 (224)
T PF03839_consen 105 EPSPLMQYLIGALLLVGVIAIC-------LFPLWPRWMR---QGVYYLSVGALGLLGLFFA 155 (224)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH-------hhhcChHHHh---heeehhHHHHHHHHHHHHH
Confidence 355555443 34444444333 3556677666 6789999887777777664
No 239
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=21.57 E-value=1.7e+02 Score=18.68 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhc
Q 018552 99 GWGSAFGALAIAMGISNMLFFIG 121 (354)
Q Consensus 99 g~~~gF~i~~v~m~ial~~f~~g 121 (354)
|| ..|++..+..++.++-|.+.
T Consensus 15 ~W-i~F~l~mi~vFi~li~ytl~ 36 (38)
T PF09125_consen 15 GW-IAFALAMILVFIALIGYTLA 36 (38)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHHHHHHHHHh
Confidence 55 78999999888888877653
No 240
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=21.54 E-value=58 Score=20.71 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=12.9
Q ss_pred CCCcCCCcchHHHHHHHHHHHHH
Q 018552 19 GSCEPAKSWQMLYLYTVLYITGF 41 (354)
Q Consensus 19 ~~c~~~~~~~~~~~~~gL~lia~ 41 (354)
.+-.++.....+.+|+||.+|.+
T Consensus 4 Npn~q~VELNRTSLY~GLllifv 26 (37)
T PF02419_consen 4 NPNKQPVELNRTSLYWGLLLIFV 26 (37)
T ss_dssp -TT---BE--CCHHHHHHHHHHH
T ss_pred CCCCCccchhHHhHHHHHHHHHH
Confidence 34445666778889999988754
No 241
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=21.43 E-value=5.2e+02 Score=26.26 Aligned_cols=94 Identities=13% Similarity=-0.004 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCC----------Ccch---hhhhh--hHHHHHHHHHHHHHHHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER----------SKDY---KTHLD--RFFNFFYLSVTVGAIVAFTLV 91 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~----------d~~~---~~~~~--s~F~~fY~~iNiGslia~~~~ 91 (354)
.+...+.++...+.+.+|.=+..+--++.+-|+++ ++++ +.+++ +.-.+==..--+|+++-|.+.
T Consensus 343 ~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~ 422 (462)
T PRK15034 343 GNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAF 422 (462)
T ss_pred cHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHH
Confidence 45666666666666777777777777777777631 1000 01111 222222223334444445444
Q ss_pred HHHHhh-hchHHHHHHHHHHHHHHHHHHHh
Q 018552 92 VYIQME-HGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 92 ~~i~~~-~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
++.-+. -+|..+|.+..+..++++++=+.
T Consensus 423 g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 423 GMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 444333 35888888887777766665443
No 242
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=21.14 E-value=3.6e+02 Score=27.39 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=53.7
Q ss_pred ccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh
Q 018552 43 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120 (354)
Q Consensus 43 tG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~ 120 (354)
.|++-...+.--+.+-|....+ .|...+.+-.-++-.|..+++....++.+.+|+...|.++++..+++++.-+.
T Consensus 123 ~g~~~~~~s~~~a~vadis~~~---~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~ 197 (463)
T KOG2816|consen 123 SGGFSAIFSVGFAYVADISSEE---ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLL 197 (463)
T ss_pred ccchhhhhhhhhhheeeccchh---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhh
Confidence 4445555555455555543332 36666766676777788889999999999999999999999998887775444
No 243
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=21.03 E-value=1.3e+02 Score=23.96 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccceeec
Q 018552 102 SAFGALAIAMGISNMLFFIGTPLYRHR 128 (354)
Q Consensus 102 ~gF~i~~v~m~ial~~f~~g~~~y~~~ 128 (354)
-.|.+..+-|+++++.|+++=+..+..
T Consensus 54 ~~~~~~~~w~~~A~~ly~~RP~s~R~~ 80 (103)
T PF11027_consen 54 SMFMMMMLWMVLAMALYLLRPSSLRSR 80 (103)
T ss_pred cHHHHHHHHHHHHHHHHHcCchhhcCC
Confidence 457777788999999999876666554
No 244
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=20.05 E-value=3e+02 Score=27.30 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=51.9
Q ss_pred HHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHhhh-chHHHHHHHHHH-
Q 018552 36 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV---AFTLVVYIQMEH-GWGSAFGALAIA- 110 (354)
Q Consensus 36 L~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGsli---a~~~~~~i~~~~-g~~~gF~i~~v~- 110 (354)
..++++|.|+.-|-.-.+..+--+ |+++..+++. | +-.+|.++ +|.+.+++.|.. +|+.....-.++
T Consensus 303 ~~llG~G~G~~F~laL~li~~rs~--~a~~Aa~LSg-m-----aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~ 374 (395)
T COG2807 303 ALLLGLGQGGAFPLALTLILLRSS--DAAIAAALSG-M-----AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT 374 (395)
T ss_pred HHHHhCccchHHHHHHHHHHhhcC--ChHHHHHHHH-H-----hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence 478899999988888888888776 4544444443 3 45555554 577889998876 465443332222
Q ss_pred HHHHHHHHHhcccceee
Q 018552 111 MGISNMLFFIGTPLYRH 127 (354)
Q Consensus 111 m~ial~~f~~g~~~y~~ 127 (354)
.+..+.-+..+|++|.+
T Consensus 375 i~m~i~Gl~a~r~~~i~ 391 (395)
T COG2807 375 LLMLIFGLRAGRNRYIR 391 (395)
T ss_pred HHHHHHHhhcchhHHhH
Confidence 22233445666666643
Done!