Query 018552
Match_columns 354
No_of_seqs 124 out of 1176
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 17:03:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.6 4.9E-15 1.7E-19 147.9 9.0 308 28-351 108-490 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.3 4.7E-11 1.6E-15 117.8 16.5 260 28-319 107-446 (491)
3 1pw4_A Glycerol-3-phosphate tr 97.9 0.00012 4.1E-09 70.4 14.0 85 28-118 118-203 (451)
4 3o7q_A L-fucose-proton symport 97.7 0.001 3.4E-08 63.7 16.8 87 27-119 115-227 (438)
5 2gfp_A EMRD, multidrug resista 97.5 4.8E-05 1.6E-09 71.7 4.2 83 28-116 87-169 (375)
6 1pw4_A Glycerol-3-phosphate tr 96.7 0.0034 1.2E-07 60.1 8.1 88 28-121 345-433 (451)
7 4aps_A DI-OR tripeptide H+ sym 96.2 0.01 3.5E-07 57.7 7.9 92 27-125 384-475 (491)
8 4gc0_A D-xylose-proton symport 95.4 0.23 7.7E-06 47.9 14.0 85 26-116 123-215 (491)
9 2xut_A Proton/peptide symporte 95.0 0.027 9.4E-07 55.2 6.0 93 27-125 403-506 (524)
10 2cfq_A Lactose permease; trans 94.5 0.022 7.4E-07 54.6 3.6 85 30-120 313-398 (417)
11 3o7q_A L-fucose-proton symport 92.4 0.21 7E-06 47.3 6.6 80 33-120 351-431 (438)
12 2gfp_A EMRD, multidrug resista 91.1 0.11 3.8E-06 48.3 3.1 78 28-112 290-367 (375)
13 4gc0_A D-xylose-proton symport 85.6 5.8 0.0002 37.7 11.3 67 46-118 387-459 (491)
14 3arc_L Photosystem II reaction 28.7 61 0.0021 19.6 3.1 22 20-41 5-26 (37)
15 2cfq_A Lactose permease; trans 24.8 2E+02 0.0068 26.4 7.9 62 50-116 243-304 (417)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.56 E-value=4.9e-15 Score=147.88 Aligned_cols=308 Identities=22% Similarity=0.289 Sum_probs=179.4
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.+.++++..+.++|.|+..|+..++++|.+++++. .+..+.|++++.+.++|..+++.+.+++.+..||++.|.+.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 567788899999999999999999999999986543 23578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccceeecCCCCCchhHHHHHHHHHHHhcccccCCcccccccccCCCcccccCCcccccCCchhhhh
Q 018552 108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD 187 (354)
Q Consensus 108 ~v~m~ial~~f~~g~~~y~~~~p~gspl~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~l~ 187 (354)
++..+++.+.++..++.+.+.+|++++..+..+.+..+.+++..+.+ +... +.+......... .+.+......+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ 259 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGL-VLALIGGVSAAY---ALVNIPTLGIVA 259 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHH-HHHHHHHHHHHH---TGGGTTTTCSSH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccch-hhhhhhhhhhhh---hhcccchhhhhh
Confidence 99988888877766665544444444333333333333332211000 0000 000000000000 000000000000
Q ss_pred HhHhhhhc--ccCCCCCc-------ccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhhhccc----c--
Q 018552 188 KAALELKE--DVINPSPW-------KLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH----M-- 252 (354)
Q Consensus 188 ~a~~~~~~--~~~~~~~~-------~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~md~~----i-- 252 (354)
.+...... +.....+| +.+++.+.++.|+++..+++++...++|..+.|..+.+..++.+++.+ .
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (524)
T 2xut_A 260 GLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAM 339 (524)
T ss_dssp HHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHH
T ss_pred hhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHH
Confidence 00000000 00001222 112233456677788888888888888998888888777776655431 0
Q ss_pred -------------------------ccCCCCCchHHHHHHHHHHHHHHHHH-----------------------------
Q 018552 253 -------------------------GHPRGASQLQRVGIGLAVSILSVIWA----------------------------- 278 (354)
Q Consensus 253 -------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a----------------------------- 278 (354)
++++.+++.+++.+|+++.+++++..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 419 (524)
T 2xut_A 340 MQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGE 419 (524)
T ss_dssp HHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHH
Confidence 11223556677888888777766432
Q ss_pred -----HHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCC-CCCcCcchHHHHHHhh
Q 018552 279 -----GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTDTSTGLSRSMAM 351 (354)
Q Consensus 279 -----~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~~~W~~~-~ln~~~ld~~~~~~~~ 351 (354)
...++..+.+|+++|+.++|++.....+|+.++..+...+...+. .+|.++ ++|.+ .+.||+.++
T Consensus 420 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~ 490 (524)
T 2xut_A 420 VLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSVT--AFQMFFFAG 490 (524)
T ss_dssp HHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc------cccccccccccc--ccHHHHHHH
Confidence 122346678999999999999999999999999999887754332 246543 33332 233665554
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.29 E-value=4.7e-11 Score=117.79 Aligned_cols=260 Identities=18% Similarity=0.181 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+...++++..+.++|.|+..|...++++|.+++++. .|..++++++.+.++|..+++.+.+++.+++||++.|.++
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 466788889999999999999999999999987653 3678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccceeec---CCCC-CchhHHHHHHH--------------HHHHhcccccCCcccccccccCCCcc
Q 018552 108 AIAMGISNMLFFIGTPLYRHR---LPGG-SPLTRVAQVLV--------------AAFRKRHAAFSSSELIGLYEVPGKHS 169 (354)
Q Consensus 108 ~v~m~ial~~f~~g~~~y~~~---~p~g-spl~~~~~v~~--------------~a~~~~~~~~~~~~~~~l~~~~~~~~ 169 (354)
++..+++++.++..++++... +|+. ....+..+... ........+.. ..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~--~~----------- 249 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLP--AY----------- 249 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTT--HH-----------
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccc--cc-----------
Confidence 998888888776554433222 1111 11111111000 00001000000 00
Q ss_pred cccCCcccccCCchhhhhHhHhhhhcccCCCCCcccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhh-h
Q 018552 170 AIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-M 248 (354)
Q Consensus 170 ~~~~~~~i~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~-m 248 (354)
................. ..|+... ....++++..+.+++++...++|..+.+..+.+..+..+ .
T Consensus 250 ----------~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (491)
T 4aps_A 250 ----------INLLTIVAIAIPVFYFA----WMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERV 314 (491)
T ss_dssp ----------HHHHHHHHHHHHHHHHH----HHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSC
T ss_pred ----------hhhhhHHHHHHHHHHHH----HHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 00000000000000000 0011001 112556777788899999999999999998887766654 3
Q ss_pred cccc--------------------------cc-CCCCCchHHHHHHHHHHHHHHHHH-----------------------
Q 018552 249 NTHM--------------------------GH-PRGASQLQRVGIGLAVSILSVIWA----------------------- 278 (354)
Q Consensus 249 d~~i--------------------------~~-~~~~s~l~ki~iG~~l~~ls~~~a----------------------- 278 (354)
+.+. |. ++.+....++.+|+++.++++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 3331 21 233566778888888877775422
Q ss_pred -----------HHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018552 279 -----------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 319 (354)
Q Consensus 279 -----------~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~ 319 (354)
....+..+..|++.|+.++|++.....+|+.++..+...+.
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12345678899999999999999999999999988876654
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.93 E-value=0.00012 Score=70.38 Aligned_cols=85 Identities=11% Similarity=0.144 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~i 106 (354)
+.+.++++..+.++|.|..-|...++++|.++++ +|...++++..+.++|.++++.+.+++.+.+| |++.|.+
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4567888888999999999999999999999743 37889999999999999999999999888898 9999999
Q ss_pred HHHHHHHHHHHH
Q 018552 107 LAIAMGISNMLF 118 (354)
Q Consensus 107 ~~v~m~ial~~f 118 (354)
.++..++..+..
T Consensus 192 ~~~~~~~~~~~~ 203 (451)
T 1pw4_A 192 PAFCAILVALFA 203 (451)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887766655443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.73 E-value=0.001 Score=63.66 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=71.6
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhhc------
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG------ 99 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~-~~~g------ 99 (354)
.+.+.++++..+.++|.|..-|...++++|.+++++ |...++++..+.++|.++++.+.+++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 457788899999999999999999999999997543 567799999999999999999999887 5554
Q ss_pred -------------------hHHHHHHHHHHHHHHHHHHH
Q 018552 100 -------------------WGSAFGALAIAMGISNMLFF 119 (354)
Q Consensus 100 -------------------~~~gF~i~~v~m~ial~~f~ 119 (354)
|++.|.+.++...+..+.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999777666555554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.54 E-value=4.8e-05 Score=71.71 Aligned_cols=83 Identities=11% Similarity=0.179 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.+.++++..+.++|.|...|...++..|.+++++ |...++++..+.++|..+++.+.+++.++.||+..|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 56677788888999999999999999999997543 678899999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 018552 108 AIAMGISNM 116 (354)
Q Consensus 108 ~v~m~ial~ 116 (354)
++..++..+
T Consensus 161 ~~~~~~~~~ 169 (375)
T 2gfp_A 161 LVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 877765554
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.72 E-value=0.0034 Score=60.07 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNi-Gslia~~~~~~i~~~~g~~~gF~i 106 (354)
+...+.+.+.+++++.++.-+...++..|.++++ .+...++++....++ |..+++.+.+++.+..||...|.+
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 418 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 5566777788888888888888889999999753 368899999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 018552 107 LAIAMGISNMLFFIG 121 (354)
Q Consensus 107 ~~v~m~ial~~f~~g 121 (354)
.++..+++.+.++..
T Consensus 419 ~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 419 MIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888887776553
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.19 E-value=0.01 Score=57.71 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=72.6
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i 106 (354)
.+...+.++..+.++|.+..-|...++..|.++++. +.....+++...++|..+++.+.+++.+ .++...|.+
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~ 456 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSY 456 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 356677788889999999999999999999998653 5678888999999999999999888875 467778888
Q ss_pred HHHHHHHHHHHHHhcccce
Q 018552 107 LAIAMGISNMLFFIGTPLY 125 (354)
Q Consensus 107 ~~v~m~ial~~f~~g~~~y 125 (354)
.++..+++.++++...++.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 457 FGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp THHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8887777777666554433
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=95.42 E-value=0.23 Score=47.92 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=64.2
Q ss_pred cchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q 018552 26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------- 97 (354)
Q Consensus 26 ~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~-------- 97 (354)
..+...++++-.+.++|.|+.-+....+++|..+++ +|....+++..++.+|.+++..+...+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 346788999999999999999999999999988632 367788888899999999888776655432
Q ss_pred hchHHHHHHHHHHHHHHHH
Q 018552 98 HGWGSAFGALAIAMGISNM 116 (354)
Q Consensus 98 ~g~~~gF~i~~v~m~ial~ 116 (354)
.+|++.+.+..+..++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~ 215 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLM 215 (491)
T ss_dssp THHHHHHHTTHHHHHHHHH
T ss_pred hhhHHHhhhhhhhhhhhhh
Confidence 3566666666555444333
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=95.01 E-value=0.027 Score=55.16 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--ch----
Q 018552 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW---- 100 (354)
Q Consensus 27 ~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~--g~---- 100 (354)
.+...+.++..++++|.+..-|...++..|..+++. +....++++...++|+.+++.+.+++.+.. +|
T Consensus 403 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~ 476 (524)
T 2xut_A 403 LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQT 476 (524)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 355667778888999999999999999999998543 678889999999999999999999987632 23
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhcccce
Q 018552 101 -----GSAFGALAIAMGISNMLFFIGTPLY 125 (354)
Q Consensus 101 -----~~gF~i~~v~m~ial~~f~~g~~~y 125 (354)
+..|.+.++..+++.++++...+++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 477 GMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3347777777777777665544444
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=94.48 E-value=0.022 Score=54.63 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 018552 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (354)
Q Consensus 30 ~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~-fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~ 108 (354)
..+.+...+.+++.+++-+....+..|.++++ .+...+.+ +..+.++|+.+++.+.+++.+..||...|.+.+
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 33444444455566666666677888888632 35666777 466778999999999999999999999999988
Q ss_pred HHHHHHHHHHHh
Q 018552 109 IAMGISNMLFFI 120 (354)
Q Consensus 109 v~m~ial~~f~~ 120 (354)
+..+++.++.+.
T Consensus 387 ~~~l~~~~~~~~ 398 (417)
T 2cfq_A 387 LVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888877776544
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=92.36 E-value=0.21 Score=47.26 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHH
Q 018552 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 111 (354)
Q Consensus 33 ~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g-~~~gF~i~~v~m 111 (354)
.+.+.+++++.+..-|...++..|.++++ +.....+.. ..++|..+++.+.+++.+..| |..+|.+++++.
T Consensus 351 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 44567788899999999999988888743 122222222 456999999999999999999 999999988777
Q ss_pred HHHHHHHHh
Q 018552 112 GISNMLFFI 120 (354)
Q Consensus 112 ~ial~~f~~ 120 (354)
++.++..+.
T Consensus 423 ~~~~~~~~~ 431 (438)
T 3o7q_A 423 AVIFIFARF 431 (438)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 665554443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=91.13 E-value=0.11 Score=48.27 Aligned_cols=78 Identities=13% Similarity=-0.011 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (354)
Q Consensus 28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~ 107 (354)
+.+.++++..+.++|.|..-|...++..|.++ + ++.+.+..+....++|..+++.+.+++.++.+|...|.+.
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p--~-----~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP--F-----LAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH--H-----HHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC--c-----ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 45667778888899999999999999999874 1 3678899999999999999999999999988999999887
Q ss_pred HHHHH
Q 018552 108 AIAMG 112 (354)
Q Consensus 108 ~v~m~ 112 (354)
++.++
T Consensus 363 ~~~~~ 367 (375)
T 2gfp_A 363 LMGLL 367 (375)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=85.64 E-value=5.8 Score=37.73 Aligned_cols=67 Identities=4% Similarity=-0.031 Sum_probs=49.6
Q ss_pred cccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------hhchHHHHHHHHHHHHHHHHHH
Q 018552 46 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLF 118 (354)
Q Consensus 46 ~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~------~~g~~~gF~i~~v~m~ial~~f 118 (354)
.-|....+.+|.|+.+ .|..+..+-+...++|+++++.+.|++.+ ..++...|.+.++..+++.+..
T Consensus 387 ~~~~~~~~~~E~fPt~------~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNA------IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp TTHHHHHHHHHSSCTT------THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3466678899999853 37888999999999999999988888754 3456667777666666555543
No 14
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=28.66 E-value=61 Score=19.63 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=16.6
Q ss_pred CCcCCCcchHHHHHHHHHHHHH
Q 018552 20 SCEPAKSWQMLYLYTVLYITGF 41 (354)
Q Consensus 20 ~c~~~~~~~~~~~~~gL~lia~ 41 (354)
+=.++.....+.+|+||.+|-+
T Consensus 5 pn~q~VELNRTSLy~GLLlifv 26 (37)
T 3arc_L 5 PNRQPVELNRTSLYLGLLLILV 26 (37)
T ss_dssp TTCCCBCCCHHHHHHHHHHHHH
T ss_pred CCCCcceechhhHHHHHHHHHH
Confidence 3445677889999999988653
No 15
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=24.76 E-value=2e+02 Score=26.39 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=36.8
Q ss_pred hhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 018552 50 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 116 (354)
Q Consensus 50 v~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~~v~m~ial~ 116 (354)
.+.+..++++..+ .-...+.+......++..++..+.+++.|++|-+-...+..+.+.++.+
T Consensus 243 ~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 243 FANFFTSFFATGE-----QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHTSSSHH-----HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 4455566664221 0123345555555567777777888999998877666665555554433
Done!