Your job contains 1 sequence.
>018554
MAESKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCF
VICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVS
ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW
ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQY
RLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQY
PMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGFLSIYSVH
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018554
(354 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2139340 - symbol:RBP-DR1 "RNA-binding protein-... 1137 2.4e-115 1
TAIR|locus:2825067 - symbol:BRN2 "Bruno-like 2" species:3... 967 2.5e-97 1
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 445 2.9e-46 2
UNIPROTKB|Q6K271 - symbol:P0415D04.46-1 "FCA" species:399... 409 1.5e-41 2
UNIPROTKB|Q6WQT6 - symbol:Q6WQT6 "Flowering time control ... 409 1.5e-41 2
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like... 405 3.2e-41 2
FB|FBgn0262475 - symbol:bru-2 "bruno-2" species:7227 "Dro... 445 4.5e-41 1
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ... 415 7.8e-39 1
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 380 2.2e-38 2
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 417 3.5e-38 1
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe... 372 3.5e-38 2
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 407 5.5e-38 1
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m... 372 7.3e-38 2
UNIPROTKB|Q7ZWM3 - symbol:tnrc4-b "CUGBP Elav-like family... 405 8.9e-38 1
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei... 405 8.9e-38 1
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m... 405 8.9e-38 1
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 405 8.9e-38 1
UNIPROTKB|Q08E07 - symbol:CELF3 "CUGBP Elav-like family m... 404 1.1e-37 1
UNIPROTKB|Q5SZQ7 - symbol:CELF3 "CUGBP Elav-like family m... 404 1.1e-37 1
UNIPROTKB|Q5SZQ8 - symbol:CELF3 "CUGBP Elav-like family m... 404 1.1e-37 1
RGD|1563168 - symbol:Celf3 "CUGBP, Elav-like family membe... 404 1.1e-37 1
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"... 373 1.2e-37 2
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"... 373 1.2e-37 2
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family... 403 1.5e-37 1
MGI|MGI:1926034 - symbol:Celf3 "CUGBP, Elav-like family m... 403 1.5e-37 1
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m... 370 1.9e-37 2
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 397 6.3e-37 1
UNIPROTKB|F1ND14 - symbol:CELF1 "CUGBP Elav-like family m... 376 6.4e-37 2
RGD|1565016 - symbol:Celf5 "CUGBP, Elav-like family membe... 391 2.7e-36 1
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 390 3.5e-36 1
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 382 2.4e-35 1
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 382 2.4e-35 1
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 382 2.4e-35 1
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 385 2.6e-35 1
MGI|MGI:1342295 - symbol:Celf1 "CUGBP, Elav-like family m... 380 4.0e-35 1
RGD|1307721 - symbol:Celf1 "CUGBP, Elav-like family membe... 380 4.0e-35 1
UNIPROTKB|Q4QQT3 - symbol:Celf1 "CUGBP Elav-like family m... 380 4.0e-35 1
ZFIN|ZDB-GENE-030826-35 - symbol:celf2 "cugbp, Elav-like ... 382 4.9e-35 1
UNIPROTKB|F1NXF6 - symbol:BRUNOL6 "Uncharacterized protei... 354 5.0e-35 2
UNIPROTKB|A7MB95 - symbol:CUGBP1 "Uncharacterized protein... 379 5.1e-35 1
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"... 379 5.1e-35 1
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ... 379 5.1e-35 1
UNIPROTKB|Q92879 - symbol:CELF1 "CUGBP Elav-like family m... 379 5.1e-35 1
UNIPROTKB|E2RGA8 - symbol:CELF3 "Uncharacterized protein"... 376 1.1e-34 1
UNIPROTKB|F1ST15 - symbol:CELF3 "Uncharacterized protein"... 376 1.1e-34 1
UNIPROTKB|Q5F3T7 - symbol:CELF1 "CUGBP Elav-like family m... 376 1.1e-34 1
UNIPROTKB|E1C045 - symbol:CELF2 "CUGBP Elav-like family m... 376 1.1e-34 1
UNIPROTKB|F1NZY6 - symbol:CELF2 "CUGBP Elav-like family m... 376 1.1e-34 1
UNIPROTKB|F1P017 - symbol:CELF2 "CUGBP Elav-like family m... 376 1.1e-34 1
UNIPROTKB|F1P674 - symbol:CELF2 "Uncharacterized protein"... 376 1.1e-34 1
UNIPROTKB|E9PC62 - symbol:CELF2 "CUGBP Elav-like family m... 376 1.1e-34 1
UNIPROTKB|O95319 - symbol:CELF2 "CUGBP Elav-like family m... 376 1.1e-34 1
UNIPROTKB|Q5VZZ6 - symbol:CELF2 "CUGBP Elav-like family m... 376 1.1e-34 1
MGI|MGI:1338822 - symbol:Celf2 "CUGBP, Elav-like family m... 376 1.1e-34 1
RGD|68347 - symbol:Celf2 "CUGBP, Elav-like family member ... 376 1.1e-34 1
UNIPROTKB|H0Y623 - symbol:CELF3 "CUGBP Elav-like family m... 375 1.3e-34 1
UNIPROTKB|Q7T2T1 - symbol:CELF2 "CUGBP Elav-like family m... 373 2.2e-34 1
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"... 327 9.0e-34 2
UNIPROTKB|Q5R995 - symbol:CELF1 "CUGBP Elav-like family m... 365 1.5e-33 1
WB|WBGene00006807 - symbol:unc-75 species:6239 "Caenorhab... 359 6.7e-33 1
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd... 359 2.0e-32 1
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like... 354 2.3e-32 1
UNIPROTKB|H9L0T2 - symbol:H9L0T2 "Uncharacterized protein... 335 2.3e-30 1
UNIPROTKB|A1L544 - symbol:TNRC4 "Trinucleotide repeat con... 307 2.2e-27 1
UNIPROTKB|F1S8E8 - symbol:CELF5 "Uncharacterized protein"... 305 3.5e-27 1
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein... 283 2.4e-24 1
TAIR|locus:2065190 - symbol:AT2G47310 species:3702 "Arabi... 266 2.2e-22 1
FB|FBgn0264001 - symbol:bru-3 "bruno-3" species:7227 "Dro... 234 4.4e-21 2
UNIPROTKB|K7EQ97 - symbol:CELF4 "CUGBP Elav-like family m... 242 1.7e-20 1
UNIPROTKB|B4DFI3 - symbol:CELF5 "CUGBP Elav-like family m... 233 1.5e-19 1
UNIPROTKB|K7EJK3 - symbol:CELF4 "CUGBP Elav-like family m... 219 4.6e-18 1
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 216 9.5e-18 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 220 5.5e-17 1
UNIPROTKB|F1M3I9 - symbol:Brunol4 "Protein Brunol4" speci... 213 2.9e-16 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 214 4.4e-16 1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 214 4.4e-16 1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 214 5.4e-16 1
UNIPROTKB|F1NYP4 - symbol:CELF4 "Uncharacterized protein"... 215 6.5e-16 1
UNIPROTKB|F1SAI1 - symbol:CELF4 "Uncharacterized protein"... 215 7.5e-16 1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 214 7.8e-16 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 212 8.6e-16 1
UNIPROTKB|E1BIM7 - symbol:LOC100851458 "Uncharacterized p... 215 1.0e-15 1
UNIPROTKB|B4DIB6 - symbol:CELF2 "cDNA FLJ51739, highly si... 215 1.1e-15 1
RGD|1307630 - symbol:Celf4 "CUGBP, Elav-like family membe... 213 1.1e-15 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 210 1.7e-15 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 210 1.7e-15 1
UNIPROTKB|Q0V9L3 - symbol:celf4 "CUGBP Elav-like family m... 198 1.9e-15 3
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 212 3.1e-15 1
UNIPROTKB|F1P5J4 - symbol:BRUNOL6 "Uncharacterized protei... 209 3.8e-15 1
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 209 7.5e-15 1
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 208 1.0e-14 1
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 208 1.0e-14 1
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 208 1.0e-14 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 204 1.1e-14 1
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 201 2.6e-14 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 202 3.6e-14 1
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 202 3.6e-14 1
UNIPROTKB|F1P311 - symbol:CELF1 "CUGBP Elav-like family m... 199 5.0e-14 1
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 200 5.7e-14 1
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 202 5.7e-14 1
WARNING: Descriptions of 647 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 223/344 (64%), Positives = 263/344 (76%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
VKLFVGQ+PKHM+E+QLL +F+EFA+VDEVNIIKDK TRASRGCCF++CPSR+EADK VN
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
ACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVSEAEV +LFS YGTIKDLQI
Sbjct: 78 ACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI 137
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LRG+QQTSKGCAFLKYETKEQA++A+E+INGKHKMEGS+VPLVVKWADTE+E
Sbjct: 138 LRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Query: 195 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGY-QASGSYGLMQYRLPPMQNQPGFHG 253
L N D +PSLFGALPMGY PPYNGYGY Q G+YG Y LPP+QNQ F
Sbjct: 198 AQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPPGTYG---YMLPPIQNQAAFSN 254
Query: 254 IIPPVNQGN--AMRGASPD-LSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLG 310
+I NQGN A++G SPD + + RN+ MPP ++GSGYPA+ G +P YP G++
Sbjct: 255 MIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMRGHPFPFAYPRGIVS 314
Query: 311 HRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGF-LSIYSV 353
RPL++SPGS+SP + S P EG L IY++
Sbjct: 315 PRPLSSSPGSISPGM--STPLGIGLSSVVQTEGPEGANLFIYNI 356
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 200/328 (60%), Positives = 240/328 (73%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
RVKLFVGQVPKHMTE QLL +F+EF++V+EVNIIK+KTTRA RGCCF+ CP+R++ADK +
Sbjct: 11 RVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI 70
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSEAEVSALFS 124
N+ HNKKTLPGASSPLQVKYADGELERL EHKLF+GMLPKNVSE EV +LFS
Sbjct: 71 NSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFS 130
Query: 125 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184
YGTIKDLQILRGS QTSKGC FLKYE+KEQA+AA+EA+NG+H MEG++VPL+VKWADTE
Sbjct: 131 EYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTE 190
Query: 185 KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPP 244
KE + L D Q+PS+FGALPM Y PPYNGYGY G+YG Y LPP
Sbjct: 191 KERQARRLLKVQSHVSRL---DPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPP 244
Query: 245 MQNQPGFHGIIPPVNQGN--AMRGASPDLSSNMGPRNYAMPPSGF-VGSGYPAVPGLQYP 301
+Q Q FH +I P NQGN A++G + L+ ++ PR P F G GLQYP
Sbjct: 245 IQTQHAFHNVISP-NQGNGRALQGTA--LTESVPPR--LAPRRNFPTALGNYGYHGLQYP 299
Query: 302 MPYPGGMLGHR-PLNNSPGSVSPAVANS 328
M +P GM+ R PL +VSP ++N+
Sbjct: 300 MAFPRGMIPPRLPLT----TVSPGISNN 323
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 445 (161.7 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 83/171 (48%), Positives = 118/171 (69%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVGQ+PK E ++ +F A ++ V++IK+KTT +GC FV PSR+EAD+A+
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQ 63
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
HN K G + LQVKYAD E E+L KLF+GMLP++ E ++ LF +G ++D+ IL
Sbjct: 64 LHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICIL 123
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
RG SKGC F+K++ +E AL+A+ +NG K++GS PLVVK+ADTEK+
Sbjct: 124 RGPNSESKGCGFIKFDNRESALSAIATLNGM-KLDGSPNPLVVKFADTEKD 173
Score = 129 (50.5 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG +P+ E Q+ +F+ +V+++ I++ + S+GC F+ +R+ A A+
Sbjct: 92 KLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSE-SKGCGFIKFDNRESALSAIAT 150
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
+ K L G+ +PL VK+AD E ++
Sbjct: 151 LNGMK-LDGSPNPLVVKFADTEKDK 174
Score = 74 (31.1 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQI-LRGSQQTSKGCAFLKYETKEQALAALEAI 163
LF+ +P S+ ++ LF YG + ++ + + SKG F+ Y+ A A+ +
Sbjct: 405 LFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNL 464
Query: 164 NGKHKMEGSSVPLVVK 179
+G+ M G + + +K
Sbjct: 465 HGQ-MMAGKKLKVSLK 479
Score = 57 (25.1 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 23/72 (31%), Positives = 30/72 (41%)
Query: 261 GNAMRGASP--DLSSNMGPRNYAMPPSGFVGSGY--PAVPGLQYPMPYPGGMLGHRPLNN 316
GN M P + +N GP M +G G+G P G+ M GGM P+ N
Sbjct: 336 GNGMNNGGPMGNGMNNGGPMGNGMNGNGMNGNGMGGPMGNGMNNGM---GGMNQGGPMGN 392
Query: 317 SPG-SVSPAVAN 327
SV P +N
Sbjct: 393 KKNQSVGPQGSN 404
Score = 55 (24.4 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 35/127 (27%), Positives = 47/127 (37%)
Query: 200 NNLPNADSQHPSLFGALPMGYAPPYNGYGY-QASGSYGLMQYRLPPMQNQPGFHGIIPPV 258
N +P+ DS PSL G P+ Y+ Y Q Y N +G
Sbjct: 247 NFIPSIDSS-PSLLGTPPIIGDGIYDIYSNSQFDNKYNNNGGMGGNGGNNGNMYG--RNF 303
Query: 259 NQGN--AMRGASPDLSSNMGPRNYAMPPSGFVGSGY----PAVPGLQYPMPYPGGMLGHR 312
N GN M G + + +N GP M G +G+G P G+ P GM G+
Sbjct: 304 NNGNNGPMGGMNGNGMNNGGPMGNGMNNGGPMGNGMNNGGPMGNGMNNGGPMGNGMNGNG 363
Query: 313 PLNNSPG 319
N G
Sbjct: 364 MNGNGMG 370
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 409 (149.0 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 75/174 (43%), Positives = 118/174 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
VKLF+G VP+ TE + +F+E V EV +IKD+ T +GCCFV + +EA++A+
Sbjct: 122 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 75 ACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131
A HN+ TLPGA P+QV+YADGE ER +EHKLF+ L K + E+ +F+ YG ++D
Sbjct: 182 ALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVED 241
Query: 132 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185
+ I++ + S+GC F+K+ ++E ALAA+ A++G + M G PL++++AD ++
Sbjct: 242 VYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKR 295
Score = 157 (60.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 35/112 (31%), Positives = 64/112 (57%)
Query: 83 PGASSPLQVKYADGELERLEH-------KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
PG S P +Y G + +H KLFIG +P+ +E +V LF +G + ++ ++
Sbjct: 97 PG-SGPRH-RYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALI 154
Query: 136 RGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +GC F+KY T E+A A+ A++ ++ + G+ P+ V++AD E+E
Sbjct: 155 KDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERE 206
Score = 121 (47.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFV + K T ++ +F + V++V I+KD R SRGC FV SR+ A A++A
Sbjct: 214 KLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGM-RQSRGCGFVKFSSREPALAAMSA 272
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
+ G PL +++AD + R
Sbjct: 273 LSGNYVMRGCEQPLIIRFADPKRPR 297
Score = 62 (26.9 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 39/162 (24%), Positives = 60/162 (37%)
Query: 171 GSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ 230
GS P+ K + N ++ + PS + MG PP G+
Sbjct: 357 GSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPS---SSHMGMNPPPMAQGHH 413
Query: 231 ASGSYGLMQYRLPPMQNQPGFHGIIPPV---NQ-GNAMRGASPDLSSNMGPRNYAMPPSG 286
G ++PP+Q PG P NQ G ++G + + P++ M P
Sbjct: 414 LGGQ------QIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQIGQLQVPQS--MGPGS 465
Query: 287 FVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 328
F G + G Q P+ P L + + S V AV+NS
Sbjct: 466 F---GQNRLSG-QLPVSQP---LMQQNASVSAVQVPSAVSNS 500
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 409 (149.0 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 75/174 (43%), Positives = 118/174 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
VKLF+G VP+ TE + +F+E V EV +IKD+ T +GCCFV + +EA++A+
Sbjct: 122 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 75 ACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131
A HN+ TLPGA P+QV+YADGE ER +EHKLF+ L K + E+ +F+ YG ++D
Sbjct: 182 ALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVED 241
Query: 132 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185
+ I++ + S+GC F+K+ ++E ALAA+ A++G + M G PL++++AD ++
Sbjct: 242 VYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKR 295
Score = 157 (60.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 35/112 (31%), Positives = 64/112 (57%)
Query: 83 PGASSPLQVKYADGELERLEH-------KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
PG S P +Y G + +H KLFIG +P+ +E +V LF +G + ++ ++
Sbjct: 97 PG-SGPRH-RYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALI 154
Query: 136 RGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +GC F+KY T E+A A+ A++ ++ + G+ P+ V++AD E+E
Sbjct: 155 KDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERE 206
Score = 121 (47.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFV + K T ++ +F + V++V I+KD R SRGC FV SR+ A A++A
Sbjct: 214 KLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGM-RQSRGCGFVKFSSREPALAAMSA 272
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
+ G PL +++AD + R
Sbjct: 273 LSGNYVMRGCEQPLIIRFADPKRPR 297
Score = 62 (26.9 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 39/162 (24%), Positives = 60/162 (37%)
Query: 171 GSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ 230
GS P+ K + N ++ + PS + MG PP G+
Sbjct: 357 GSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPS---SSHMGMNPPPMAQGHH 413
Query: 231 ASGSYGLMQYRLPPMQNQPGFHGIIPPV---NQ-GNAMRGASPDLSSNMGPRNYAMPPSG 286
G ++PP+Q PG P NQ G ++G + + P++ M P
Sbjct: 414 LGGQ------QIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQIGQLQVPQS--MGPGS 465
Query: 287 FVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 328
F G + G Q P+ P L + + S V AV+NS
Sbjct: 466 F---GQNRLSG-QLPVSQP---LMQQNASVSAVQVPSAVSNS 500
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 405 (147.6 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 79/172 (45%), Positives = 114/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ +R+ A KA
Sbjct: 47 IKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQT 106
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K E +V LF +G+I++ I
Sbjct: 107 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFGSIEECTI 166
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG SKGCAF+KY T +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 167 LRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFADTDKE 218
Score = 161 (61.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K E + +F+ F ++E I++ S+GC FV + EA A++A
Sbjct: 136 KLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPDGN-SKGCAFVKYSTHAEAQAAISA 194
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+PGASS L VK+AD + ER
Sbjct: 195 LHGSQTMPGASSSLVVKFADTDKER 219
Score = 72 (30.4 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ + E+ +F +G + ++ R + Q SK F+ ++ A AA+++
Sbjct: 437 LFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQ-SKCFGFVSFDNPGSAQAAIQS 495
Query: 163 ING 165
+NG
Sbjct: 496 MNG 498
Score = 49 (22.3 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 17/59 (28%), Positives = 22/59 (37%)
Query: 205 ADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNA 263
A QH + LP P +G G G +P + GF G+ PP G A
Sbjct: 275 AQMQHMATINGLPGAPMTPTSG-GSTPPGITAPTVTSIPSPISVNGFTGLPPPQANGQA 332
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 445 (161.7 bits), Expect = 4.5e-41, P = 4.5e-41
Identities = 114/314 (36%), Positives = 168/314 (53%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+K+FVGQ+PK E +L MF++F V +N+++DK T SRGCCFV +R+ A +A +
Sbjct: 295 IKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQD 354
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A HN KTL G P+Q+K AD E R E KLF+GML K +EA+V LF+ +GTI++ +
Sbjct: 355 ALHNIKTLDGMHHPIQMKPADSE-NRNERKLFVGMLNKKYTEADVRQLFTGHGTIEECTV 413
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LR SKGCAF+ + TK+ A+ A++A++ MEG S PLVVK+ADT+KE
Sbjct: 414 LRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEKDQKKMQQ 473
Query: 195 XXXXXN-NLPN---ADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250
N P+ A + P++ A + APP G + + S +P +Q Q G
Sbjct: 474 IHAFCGINTPSGATAGAATPTINAATALIAAPPSAG---RTNPSMAAALAAVPQVQ-QAG 529
Query: 251 FHGIIP----PVNQGNAMRGA-SPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYP 305
P P+N A+ + +P+L + A + ++G+ A LQ
Sbjct: 530 SAATAPTTLVPLNSTTALSASLTPNLLATNAAHQGAAAAAAYLGADPAAAAHLQLYQQLH 589
Query: 306 GGMLGHRPLNNSPG 319
G G P + PG
Sbjct: 590 G--YGLSPAHYLPG 601
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 80/172 (46%), Positives = 120/172 (69%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F++F + E+ +IKDK T +GC F+ +R+ A KA N
Sbjct: 7 IKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQN 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E R + KLF+GML K +S+A+V +F +G+I++ +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSE-GRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTV 125
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG SKGCAF+KY++ +A AA+ A++G + G+S LVVK+ADTEKE
Sbjct: 126 LRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKE 177
Score = 182 (69.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +++A + MF+ F ++E +++ AS+GC FV S EA A++A
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDG-ASKGCAFVKYQSNAEAQAAISA 153
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +TLPGASS L VK+AD E ER
Sbjct: 154 LHGSRTLPGASSSLVVKFADTEKER 178
Score = 76 (31.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 427
Query: 163 ING 165
+NG
Sbjct: 428 MNG 430
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 380 (138.8 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 73/171 (42%), Positives = 112/171 (65%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+FVG +P M E + +F +F + ++ IIKDK T S+GC F+ +++EAD A+N
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 77 HNKKT-LPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
+ T L + PLQVKY+D E+E++E KLFIGML + E ++ LF YG I+DL I+
Sbjct: 80 NESGTFLENMNKPLQVKYSDNEIEKMERKLFIGMLGTS-DEDQIRILFGNYGIIEDLNIV 138
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
R KG F+KY T++++ AL I+GKH + GS++P++VK+ADTE++
Sbjct: 139 REKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQ 189
Score = 132 (51.5 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 29/93 (31%), Positives = 55/93 (59%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + E Q+ +F + +++++NI+++K + +G F+ +R E++ A+
Sbjct: 108 KLFIGMLGTS-DEDQIRILFGNYGIIEDLNIVREKDGKP-KGYGFIKYSTRDESENALRE 165
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIG 108
K TLPG++ P+ VK+AD ER + K +G
Sbjct: 166 IDGKHTLPGSNLPIIVKFAD--TERQKRKKLLG 196
Score = 97 (39.2 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP + E+ LF+ YG + ++ + +QQ SK F+ Y+ + A+AA++
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQ-SKCFGFVSYDNTQSAIAAIQE 347
Query: 163 INGKHKMEGSSVPLVVK 179
+NG+ +EG + + K
Sbjct: 348 LNGR-AIEGKKLKVNFK 363
Score = 47 (21.6 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 222 PPYNGYG-YQASGSYGLMQYRLPPMQNQ--PGFHGIIPPVNQG---NAMRGASPDLSSNM 275
PP N + YQ + Q + QNQ P F+G ++Q N RG + N
Sbjct: 200 PPQNPFNFYQQNQQQQQQQQQQQQQQNQYQPFFYGQNSQMSQAMGNNGYRGYQQQPNVNF 259
Query: 276 G 276
G
Sbjct: 260 G 260
Score = 41 (19.5 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 224 YNGYGYQASGSYGLMQ 239
Y GY Q + ++G+MQ
Sbjct: 248 YRGYQQQPNVNFGMMQ 263
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 417 (151.9 bits), Expect = 3.5e-38, P = 3.5e-38
Identities = 84/173 (48%), Positives = 118/173 (68%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+K+FVGQVPK M E+QL MF+E+ V +N+++DK T S+GCCFV +R A KA +
Sbjct: 357 IKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQD 416
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A HN KTL G P+Q+K AD E R E KLF+GML K ++E +V LF ++G I++ +
Sbjct: 417 ALHNVKTLNGMYHPIQMKPADSE-NRNERKLFVGMLNKKLNENDVRKLFEVHGAIEECTV 475
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHK-MEGSSVPLVVKWADTEKE 186
LR SKGCAF+ + TK A++A++ ++K MEG + PLVVK+ADT+KE
Sbjct: 476 LRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKE 528
Score = 148 (57.2 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 91 VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLK 149
V Y + E + K+F+G +PK++ E+++ +F YG + + +LR SKGC F+
Sbjct: 345 VTYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVT 404
Query: 150 YETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184
+ T+ AL A +A++ + G P+ +K AD+E
Sbjct: 405 FYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSE 439
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K + E + +F+ ++E +++D+ + S+GC FV ++ A A+
Sbjct: 445 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQ-SKGCAFVTFATKHAAISAIKV 503
Query: 76 CHNK-KTLPGASSPLQVKYADGELERLEHKL 105
++ K + G +SPL VK+AD + E+ + K+
Sbjct: 504 TLSQNKIMEGCTSPLVVKFADTQKEKEQKKI 534
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 372 (136.0 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 74/172 (43%), Positives = 111/172 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LR TSKGCAF+K+ ++ +A AA++ ++G M G+S LVVK ADT++E
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRE 217
Score = 145 (56.1 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K E + +F+ F ++E +++ S+GC FV S+ EA A+
Sbjct: 135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDG-TSKGCAFVKFGSQGEAQAAIQG 193
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+ GASS L VK AD + ER
Sbjct: 194 LHGSRTMTGASSSLVVKLADTDRER 218
Score = 74 (31.1 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE+ F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 377 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ-SKCFGFVSFDNPTSAQTAIQA 435
Query: 163 ING 165
+NG
Sbjct: 436 MNG 438
Score = 53 (23.7 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 289 GSGYPAVPGLQYPMPYPG-GMLGHRPLNNSPGSVS 322
G+G A+PGL PM G G L + N PGS S
Sbjct: 300 GNGPGALPGLPAPMGVNGFGSLNPQT-NGQPGSDS 333
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 103/313 (32%), Positives = 162/313 (51%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E QL +F+ + V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 54 IKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEA 113
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLF+GM+ K +E ++ +FS YG I+
Sbjct: 114 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYGQIE 173
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXX 190
+ +ILRG S+GCAF+ + ++ A +A+++++ MEG S P+VVK+ADT+K+
Sbjct: 174 ECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDKEQK 233
Query: 191 XXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250
NA S +L G +G P Y Q S S G L PM
Sbjct: 234 RIAQQLQQQMQQLNAASMWGNLTGLNSLG--PQYLAL-LQQSASSGNALNNLHPMSGLNA 290
Query: 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLG 310
+ +A + A+P SS + + P S SG P+ G + G
Sbjct: 291 MQNLAALAAAASATQ-ATPTGSSAL--TTSSSPLSVLTSSGTPS--GQPAQSAWDAYKAG 345
Query: 311 HRPLNNSPGSVSP 323
P +++ SV+P
Sbjct: 346 SSPTSSTSSSVNP 358
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 372 (136.0 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 74/172 (43%), Positives = 111/172 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LR TSKGCAF+K+ ++ +A AA++ ++G M G+S LVVK ADT++E
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRE 217
Score = 145 (56.1 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K E + +F+ F ++E +++ S+GC FV S+ EA A+
Sbjct: 135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDG-TSKGCAFVKFGSQGEAQAAIQG 193
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+ GASS L VK AD + ER
Sbjct: 194 LHGSRTMTGASSSLVVKLADTDRER 218
Score = 74 (31.1 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE+ F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 377 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ-SKCFGFVSFDNPTSAQTAIQA 435
Query: 163 ING 165
+NG
Sbjct: 436 MNG 438
Score = 50 (22.7 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 289 GSGYPAVPGLQYPMPYPG-GMLGHRPLNNSPGS 320
G+G A+PGL PM G G L + N PGS
Sbjct: 300 GNGPGALPGLPAPMGVNGFGSLTPQS-NGQPGS 331
Score = 37 (18.1 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 204 NADSQHPSLFGALPMGYAPPYNGYGYQAS 232
N S +P+ A P YAP + Q S
Sbjct: 337 NGVSPYPA---AYPSAYAPASTAFSQQPS 362
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 77/172 (44%), Positives = 116/172 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F++F + E+ +IKDK T +GC F+ +R+ A KA +
Sbjct: 7 IKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +G I + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ A++G + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKE 178
Score = 180 (68.4 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+NA
Sbjct: 96 KLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPDG-TSKGCAFVKFQTHTEAQAAINA 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +TLPGASS L VK+AD E ER
Sbjct: 155 LHGSRTLPGASSSLVVKFADTEKER 179
Score = 74 (31.1 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA+++
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPGSAQAAIQS 437
Query: 163 ING 165
+NG
Sbjct: 438 MNG 440
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 80/172 (46%), Positives = 115/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E R + KLF+GML K SE +V LF +G I++ I
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 172
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 173 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 224
Score = 170 (64.9 bits), Expect = 6.4e-11, Sum P(3) = 6.4e-11
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 200
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 201 LHGSQTMPGASSSLVVKFADTDKERTMRRM 230
Score = 43 (20.2 bits), Expect = 6.4e-11, Sum P(3) = 6.4e-11
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
LFI LP+ +AE+ +F +G +
Sbjct: 412 LFIYHLPQEFGDAELMQMFLPFGFV 436
Score = 37 (18.1 bits), Expect = 6.4e-11, Sum P(3) = 6.4e-11
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 147 FLKYETKEQALAALEAING 165
F+ ++ A A++A+NG
Sbjct: 435 FVSFDNPASAQTAIQAMNG 453
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 80/172 (46%), Positives = 115/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E R + KLF+GML K SE +V LF +G I++ I
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 172
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 173 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 224
Score = 170 (64.9 bits), Expect = 6.4e-11, Sum P(3) = 6.4e-11
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 200
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 201 LHGSQTMPGASSSLVVKFADTDKERTMRRM 230
Score = 43 (20.2 bits), Expect = 6.4e-11, Sum P(3) = 6.4e-11
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
LFI LP+ +AE+ +F +G +
Sbjct: 411 LFIYHLPQEFGDAELMQMFLPFGFV 435
Score = 37 (18.1 bits), Expect = 6.4e-11, Sum P(3) = 6.4e-11
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 147 FLKYETKEQALAALEAING 165
F+ ++ A A++A+NG
Sbjct: 434 FVSFDNPASAQTAIQAMNG 452
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 80/172 (46%), Positives = 115/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E R + KLF+GML K SE +V LF +G I++ I
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 172
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 173 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 224
Score = 170 (64.9 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 200
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 201 LHGSQTMPGASSSLVVKFADTDKERTMRRM 230
Score = 45 (20.9 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
LFI LP+ +AE+ +F +G +
Sbjct: 411 LFIYHLPQEFGDAELMQMFLPFGNV 435
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 78/172 (45%), Positives = 114/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 179 (68.1 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 155 LHSSRTLPGASSSLVVKFADTEKER 179
Score = 76 (31.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 436
Query: 163 ING 165
+NG
Sbjct: 437 MNG 439
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 78/172 (45%), Positives = 114/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 179 (68.1 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 155 LHSSRTLPGASSSLVVKFADTEKER 179
Score = 76 (31.8 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 390
Query: 163 ING 165
+NG
Sbjct: 391 MNG 393
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 78/172 (45%), Positives = 114/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 179 (68.1 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 155 LHSSRTLPGASSSLVVKFADTEKER 179
Score = 76 (31.8 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 440
Query: 163 ING 165
+NG
Sbjct: 441 MNG 443
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 78/172 (45%), Positives = 114/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 179 (68.1 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 155 LHSSRTLPGASSSLVVKFADTEKER 179
Score = 76 (31.8 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 469
Query: 163 ING 165
+NG
Sbjct: 470 MNG 472
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 373 (136.4 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 74/172 (43%), Positives = 112/172 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LR TSKGCAF+K+ ++ +A AA+++++G M G+S LVVK ADT++E
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRE 217
Score = 146 (56.5 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K E + +F+ F ++E +++ S+GC FV S+ EA A+ +
Sbjct: 135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDG-TSKGCAFVKFGSQGEAQAAIQS 193
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+ GASS L VK AD + ER
Sbjct: 194 LHGSRTMAGASSSLVVKLADTDRER 218
Score = 74 (31.1 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE+ F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 399 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ-SKCFGFVSFDNPTSAQTAIQA 457
Query: 163 ING 165
+NG
Sbjct: 458 MNG 460
Score = 47 (21.6 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 19/44 (43%), Positives = 21/44 (47%)
Query: 283 PPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPL----NNSPGSVS 322
PP G G G +PGL P P G+ G PL N PGS S
Sbjct: 299 PPGG--GPG--TLPGL----PAPIGVNGFGPLTPQTNGQPGSDS 334
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 373 (136.4 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 74/172 (43%), Positives = 112/172 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LR TSKGCAF+K+ ++ +A AA+++++G M G+S LVVK ADT++E
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRE 217
Score = 146 (56.5 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K E + +F+ F ++E +++ S+GC FV S+ EA A+ +
Sbjct: 135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDG-TSKGCAFVKFGSQGEAQAAIQS 193
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+ GASS L VK AD + ER
Sbjct: 194 LHGSRTMAGASSSLVVKLADTDRER 218
Score = 74 (31.1 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE+ F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 399 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ-SKCFGFVSFDNPTSAQTAIQA 457
Query: 163 ING 165
+NG
Sbjct: 458 MNG 460
Score = 47 (21.6 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 19/44 (43%), Positives = 21/44 (47%)
Query: 283 PPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPL----NNSPGSVS 322
PP G G G +PGL P P G+ G PL N PGS S
Sbjct: 299 PPGG--GPG--TLPGL----PAPIGVNGFGPLTPQTNGQPGSDS 334
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 77/172 (44%), Positives = 116/172 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F++F + E+ +IKDK T +GC F+ +R+ A KA +
Sbjct: 7 IKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +G I + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ A++G + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKE 178
Score = 180 (68.4 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+NA
Sbjct: 96 KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPDG-TSKGCAFVKFQTHTEAQAAINA 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +TLPGASS L VK+AD E ER
Sbjct: 155 LHGSRTLPGASSSLVVKFADTEKER 179
Score = 77 (32.2 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPGSAQAAIQA 437
Query: 163 ING 165
+NG
Sbjct: 438 MNG 440
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 79/172 (45%), Positives = 115/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E R + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 125
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 126 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 177
Score = 179 (68.1 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 95 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 153
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 154 LHSSRTLPGASSSLVVKFADTEKER 178
Score = 76 (31.8 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 440
Query: 163 ING 165
+NG
Sbjct: 441 MNG 443
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 370 (135.3 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 74/172 (43%), Positives = 110/172 (63%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LR TSKGCAF+K+ ++ +A AA+ ++G M G+S LVVK ADT++E
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRE 217
Score = 145 (56.1 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K E + +F+ F ++E +++ S+GC FV S+ EA A+
Sbjct: 135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDG-TSKGCAFVKFGSQGEAQAAIRG 193
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+ GASS L VK AD + ER
Sbjct: 194 LHGSRTMAGASSSLVVKLADTDRER 218
Score = 74 (31.1 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE+ F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 398 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ-SKCFGFVSFDNPTSAQTAIQA 456
Query: 163 ING 165
+NG
Sbjct: 457 MNG 459
Score = 48 (22.0 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 289 GSGYPAVPGLQYPMPYPGGMLGHRPL----NNSPGS 320
GSG +PGL P P G+ G PL N PGS
Sbjct: 300 GSGPGTLPGL----PAPIGVNGFGPLTPQTNGQPGS 331
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 111/305 (36%), Positives = 153/305 (50%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ ++KD T +GC F+ +R A KA
Sbjct: 45 IKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQT 104
Query: 75 ACHNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A H +KTLPG + P+QVK AD E + KLF+GML K SE +V LF +G I +
Sbjct: 105 ALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 164
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXX 193
+LRG +SKGCAF+K+ + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 165 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQ 224
Query: 194 XXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHG 253
L PSL LP PY+ Y QA LMQ + + +
Sbjct: 225 QMVGQLGILT------PSL--TLPFS---PYSAYA-QA-----LMQQQTTVLSTSGSY-- 265
Query: 254 IIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGS---GYPAVPGLQYPM-------- 302
+ P V +S N P P SG G AVPGL P+
Sbjct: 266 LSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVV 325
Query: 303 PYPGG 307
P+PGG
Sbjct: 326 PFPGG 330
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 376 (137.4 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 74/176 (42%), Positives = 115/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 191
Score = 174 (66.3 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 48/156 (30%), Positives = 76/156 (48%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPIVVKFADTQKDK-EQKRIAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + L +T + L ++ H M G
Sbjct: 224 -GPQYLA-----LLQQTAAASSGNLNTLSSLHPMGG 253
Score = 37 (18.1 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 290 SGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
SG A+ P+ G P ++S SV+P
Sbjct: 277 SGTAALTSSSSPLSVLTSSAGSSPSSSSSSSVNP 310
>RGD|1565016 [details] [associations]
symbol:Celf5 "CUGBP, Elav-like family member 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565016 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13207 GeneTree:ENSGT00560000076837 OrthoDB:EOG4RJG30 CTD:60680
IPI:IPI00914219 RefSeq:NP_001129075.1 UniGene:Rn.12319
ProteinModelPortal:D4A8V0 Ensembl:ENSRNOT00000061219 GeneID:314647
KEGG:rno:314647 UCSC:RGD:1565016 NextBio:668034 Uniprot:D4A8V0
Length = 395
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 111/314 (35%), Positives = 156/314 (49%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ ++KD T +GC F+ +R A KA
Sbjct: 7 IKLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKAQT 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A H +KTLPG + P+QVK AD E + KLF+GML K SE +V LF +G I +
Sbjct: 67 ALHEQKTLPGMARPIQVKPADSENRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 126
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXX 193
+LRG +SKGCAF+K+ + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 127 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQ 186
Query: 194 XXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGY----------QASGSYGLMQYRLP 243
L PSL LP PY+ Y SGSY P
Sbjct: 187 QMVGQLGILT------PSL--TLPFS---PYSAYAQALMQQQTTVLSTSGSYLSPGVAFP 235
Query: 244 PMQNQP----GFHGI-IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGS-GYPAV-P 296
P Q +G+ P+ + + + P L + P PSGF G +P P
Sbjct: 236 PCHIQQIGTVSLNGLPATPIAPASGLH-SPPLLGTAAVPGLMTSIPSGFPGVLPFPGSHP 294
Query: 297 GLQ--YP---MPYP 305
L+ Y +PYP
Sbjct: 295 ALETVYANGLVPYP 308
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 110/305 (36%), Positives = 153/305 (50%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+++ E L +F++F + E+ ++KD T +GC F+ +R A KA
Sbjct: 45 IKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQT 104
Query: 75 ACHNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A H +KTLPG + P+QVK AD E + KLF+GML K SE +V LF +G I +
Sbjct: 105 ALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 164
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXX 193
+LRG +SKGCAF+K+ + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 165 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQ 224
Query: 194 XXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHG 253
L PSL LP PY+ Y QA LMQ + + +
Sbjct: 225 QMVGQLGILT------PSL--TLPFS---PYSAYA-QA-----LMQQQTTVLSTSGSY-- 265
Query: 254 IIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGS---GYPAVPGLQYPM-------- 302
+ P V +S N P P SG G AVPGL P+
Sbjct: 266 LSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVV 325
Query: 303 PYPGG 307
P+PGG
Sbjct: 326 PFPGG 330
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 80/182 (43%), Positives = 116/182 (63%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFS 124
A H +KTLPG + P+QVK AD E L + + KLF+GML K SE +V LF
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFE 173
Query: 125 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184
+G I++ ILRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+
Sbjct: 174 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233
Query: 185 KE 186
KE
Sbjct: 234 KE 235
Score = 170 (64.9 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 153 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 211
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 212 LHGSQTMPGASSSLVVKFADTDKERTMRRM 241
Score = 43 (20.2 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
LFI LP+ +AE+ +F +G +
Sbjct: 423 LFIYHLPQEFGDAELMQMFLPFGFV 447
Score = 37 (18.1 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 147 FLKYETKEQALAALEAING 165
F+ ++ A A++A+NG
Sbjct: 446 FVSFDNPASAQTAIQAMNG 464
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 80/182 (43%), Positives = 116/182 (63%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFS 124
A H +KTLPG + P+QVK AD E L + + KLF+GML K SE +V LF
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFE 173
Query: 125 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184
+G I++ ILRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+
Sbjct: 174 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233
Query: 185 KE 186
KE
Sbjct: 234 KE 235
Score = 170 (64.9 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 153 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 211
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 212 LHGSQTMPGASSSLVVKFADTDKERTMRRM 241
Score = 43 (20.2 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
LFI LP+ +AE+ +F +G +
Sbjct: 423 LFIYHLPQEFGDAELMQMFLPFGFV 447
Score = 37 (18.1 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 147 FLKYETKEQALAALEAING 165
F+ ++ A A++A+NG
Sbjct: 446 FVSFDNPASAQTAIQAMNG 464
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 80/182 (43%), Positives = 116/182 (63%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFS 124
A H +KTLPG + P+QVK AD E L + + KLF+GML K SE +V LF
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFE 173
Query: 125 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184
+G I++ ILRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+
Sbjct: 174 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233
Query: 185 KE 186
KE
Sbjct: 234 KE 235
Score = 170 (64.9 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 153 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 211
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 212 LHGSQTMPGASSSLVVKFADTDKERTMRRM 241
Score = 37 (18.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 147 FLKYETKEQALAALEAING 165
F+ ++ A A++A+NG
Sbjct: 446 FVSFDNPASAQTAIQAMNG 464
Score = 37 (18.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
L I LP+ +AE+ +F +G +
Sbjct: 423 LLIYHLPQEFGDAELMQMFLPFGFV 447
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 385 (140.6 bits), Expect = 2.6e-35, P = 2.6e-35
Identities = 77/181 (42%), Positives = 116/181 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F++F + E+ ++KD+ T +GC F+ +R+ A KA N
Sbjct: 136 IKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQN 195
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K +E +V LF YG I++ +
Sbjct: 196 ALHEQKTLPGMTRPIQVKPADSESRGEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEECTV 255
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM---------EGSSVPLVVKWADTEK 185
LRG SKGCAF+K+ T +A +A+ A++G M +G+S LVVK+ADT+K
Sbjct: 256 LRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQTMPTGSDSLLPQGASSSLVVKFADTDK 315
Query: 186 E 186
E
Sbjct: 316 E 316
Score = 150 (57.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 38/124 (30%), Positives = 63/124 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K TE + +F+ + +++E +++ S+GC FV + EA A++A
Sbjct: 225 KLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGN-SKGCAFVKFSTHAEAQSAISA 283
Query: 76 CHNKKTLP---------GASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFS 124
H +T+P GASS L VK+AD + ER ++ +G + ++ FS
Sbjct: 284 LHGSQTMPTGSDSLLPQGASSSLVVKFADTDKERTIRRMQQMVGQF--GIFNPAIALPFS 341
Query: 125 IYGT 128
Y T
Sbjct: 342 TYST 345
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 75/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+NI++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 180 (68.4 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRTMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 224 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 255
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 75/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+NI++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 178 (67.7 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 48/158 (30%), Positives = 78/158 (49%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRTMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKE---QALAALEAINGKHKME 170
G Q + L+ L++L + G + M+
Sbjct: 224 -GPQYLALYLQLLQQTANSGNLNTLSSLHPMGGLNAMQ 260
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 75/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+NI++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 178 (67.7 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 48/158 (30%), Positives = 78/158 (49%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRTMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKE---QALAALEAINGKHKME 170
G Q + L+ L++L + G + M+
Sbjct: 224 -GPQYLALYLQLLQQTANSGNLNTLSSLHPMGGLNAMQ 260
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 382 (139.5 bits), Expect = 4.9e-35, P = 4.9e-35
Identities = 86/227 (37%), Positives = 130/227 (57%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++NI++D++ S+GCCFV +R+ A +A
Sbjct: 115 IKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEA 174
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTL G P+Q+K AD E + KLFIGM+ K +E ++ +FS YG I+
Sbjct: 175 QNALHNIKTLTGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPYGQIE 234
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXX 190
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 235 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMVVKFADTQKDKEQR 294
Query: 191 XXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGL 237
N+ S SL G G P Y QA+ S L
Sbjct: 295 RLQQQLAQQMQQLNSASAWGSLTGLT--GLTPQYLALLQQATSSSNL 339
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 354 (129.7 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 76/179 (42%), Positives = 112/179 (62%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+++ E+ L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 48 IKLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQS 107
Query: 75 ACHNKKTLPGASSPLQVKY------ADGE-LERLEHKLFIGMLPKNVSEAEVSALFSIYG 127
A H +KTLPG S ++ AD L + KLF+GML K SE +V LF +G
Sbjct: 108 ALHEQKTLPGVSDGRELGRGLGWPPADSSALPPEDRKLFVGMLGKQQSEDDVRRLFEPFG 167
Query: 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
I++ ILRG SKGCAF+KY + +A AA+ +++G M G+S LVVK+ADT+KE
Sbjct: 168 QIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSLHGSQTMPGASSSLVVKFADTDKE 226
Score = 166 (63.5 bits), Expect = 5.1e-11, Sum P(3) = 5.1e-11
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ AS+GC FV S EA A+++
Sbjct: 144 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDG-ASKGCAFVKYSSHAEAQAAISS 202
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+PGASS L VK+AD + ER
Sbjct: 203 LHGSQTMPGASSSLVVKFADTDKER 227
Score = 45 (20.9 bits), Expect = 5.1e-11, Sum P(3) = 5.1e-11
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
LFI LP+ +AE++ +F +G +
Sbjct: 413 LFIYHLPQEFGDAELTQMFLPFGFV 437
Score = 41 (19.5 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 205 ADSQHPSLFGALPMGYAPPYNGYGYQA 231
A QH ++ A P YAP + QA
Sbjct: 371 AGMQHYAVPAAYPTAYAPISQAFPQQA 397
Score = 41 (19.5 bits), Expect = 5.1e-11, Sum P(3) = 5.1e-11
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 147 FLKYETKEQALAALEAING 165
F+ ++ A AA++A+NG
Sbjct: 436 FVSFDNPTSAQAAIQAMNG 454
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 74/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 180 (68.4 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 224 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 255
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 74/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 163 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218
Score = 180 (68.4 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 194
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 195 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 250
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 251 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 282
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 74/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 163 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218
Score = 180 (68.4 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 194
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 195 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 250
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 251 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 282
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 74/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 180 (68.4 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 224 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 255
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/166 (43%), Positives = 108/166 (65%)
Query: 21 QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80
Q+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +A H +K
Sbjct: 90 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQK 149
Query: 81 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ 140
TLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +LRG
Sbjct: 150 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG 209
Query: 141 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 210 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 255
Score = 179 (68.1 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 173 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 231
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 232 LHSSRTLPGASSSLVVKFADTEKER 256
Score = 76 (31.8 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 456 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 514
Query: 163 ING 165
+NG
Sbjct: 515 MNG 517
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/166 (43%), Positives = 108/166 (65%)
Query: 21 QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80
Q+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +A H +K
Sbjct: 14 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQK 73
Query: 81 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ 140
TLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +LRG
Sbjct: 74 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG 133
Query: 141 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 134 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 179
Score = 179 (68.1 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 155
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 156 LHSSRTLPGASSSLVVKFADTEKER 180
Score = 76 (31.8 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 440
Query: 163 ING 165
+NG
Sbjct: 441 MNG 443
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 74/176 (42%), Positives = 115/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 191
Score = 179 (68.1 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 48/156 (30%), Positives = 77/156 (49%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPIVVKFADTQKDK-EQKRIAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + L+ +T + L ++ H M G
Sbjct: 224 -GPQYLALYLQLLQ-QTAAASSGNLNTLSSLHPMGG 257
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 161 (61.7 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 168 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 197
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 161 (61.7 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 168 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 197
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 22 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 81
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 82 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 141
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 142 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 197
Score = 161 (61.7 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 115 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 173
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 174 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 203
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 161 (61.7 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 168 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 197
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 47 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 106
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 107 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 166
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 167 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 222
Score = 161 (61.7 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 140 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 198
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 199 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 228
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 159
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 160 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
Score = 161 (61.7 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 133 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 191
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 192 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 221
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 161 (61.7 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 168 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 197
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 159
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 160 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
Score = 161 (61.7 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 133 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 191
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 192 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 221
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 159
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 160 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
Score = 161 (61.7 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 133 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 191
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 192 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 221
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 74/166 (44%), Positives = 109/166 (65%)
Query: 21 QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80
Q+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +A H +K
Sbjct: 15 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQK 74
Query: 81 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ 140
TLPG + P+QVK AD E R + KLF+GML K ++ +V +F +GTI + +LRG
Sbjct: 75 TLPGMNRPIQVKPADSE-SRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG 133
Query: 141 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 134 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 179
Score = 179 (68.1 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 155
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 156 LHSSRTLPGASSSLVVKFADTEKER 180
Score = 76 (31.8 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 441
Query: 163 ING 165
+NG
Sbjct: 442 MNG 444
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 73/176 (41%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 161 (61.7 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 168 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 197
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 327 (120.2 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 64/155 (41%), Positives = 99/155 (63%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 169
LR TSKGCAF+K+ ++ +A AA+++++G M
Sbjct: 127 LRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTM 161
Score = 134 (52.2 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEA 162
KLF+G +P+ + E ++ LF +G I +L +L+ KGCAFL Y ++ AL A A
Sbjct: 8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 67
Query: 163 INGKHKMEGSSVPLVVKWADTE 184
++ + + G + P+ VK A +E
Sbjct: 68 LHEQKTLPGMNRPIQVKPAASE 89
Score = 56 (24.8 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 31/89 (34%), Positives = 41/89 (46%)
Query: 246 QNQPGFHGIIPPVNQGNAMRGASPDLSS---NMGPRNYAMPPSGFVGSGYPAVPGLQYPM 302
Q + G G+ P + A+ GA+ L N+GP SG V + PA+P + P
Sbjct: 170 QGEAG--GVGPGFSSPRAI-GAAQGLMGTALNLGPGL----GSGLVTAASPALP--RAPR 220
Query: 303 PYPG-GMLGHRPLNNSPGSVSPAVANSNP 330
P G G G RP +SP PA A S P
Sbjct: 221 PGAGRGGAGPRP--DSPTPRPPA-ATSQP 246
Score = 53 (23.7 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 23/69 (33%), Positives = 29/69 (42%)
Query: 256 PPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPL- 314
P +G A G PD + P + P G G ++PGL P P G+ G PL
Sbjct: 221 PGAGRGGA--GPRPDSPTPRPPAATSQP-----GGGPGSLPGL----PAPIGVNGFGPLT 269
Query: 315 ---NNSPGS 320
N PGS
Sbjct: 270 PQTNGQPGS 278
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 72/176 (40%), Positives = 114/176 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +IL G S+GCA + + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 163 ECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218
Score = 169 (64.5 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 47/156 (30%), Positives = 76/156 (48%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I+ SRGC V +R A A+ A
Sbjct: 136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILWGPDG-LSRGCALVTFTTRAMAQTAIKA 194
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 195 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 250
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 251 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 282
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 77/179 (43%), Positives = 113/179 (63%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+++ E L +F++F + E I+KDK T +GC F+ R A +
Sbjct: 29 IKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQA 88
Query: 75 ACHNKKTLPGASSPLQVKYADGEL------ERLEHK-LFIGMLPKNVSEAEVSALFSIYG 127
H++KTLPG + +QVK AD + ++++ K LFIGML K SE EV ALF+ +G
Sbjct: 89 TLHDQKTLPGMNRAMQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFG 148
Query: 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ ++ +LRG+ SKGCAF+KY+ A A+ A++G M G+S LVVK+ADTEKE
Sbjct: 149 ELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVKYADTEKE 207
Score = 184 (69.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 48/139 (34%), Positives = 73/139 (52%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K +E ++ A+F F +DEV +++ AS+GC FV +A A++A
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRG-ADGASKGCAFVKYKHGLDAHMAISA 183
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLF-----IGML-PKNVSEAEVSALFSIYGTI 129
H +T+PGASS L VKYAD E ER ++ +GML P V++ V ++ Y +
Sbjct: 184 LHGSQTMPGASSSLVVKYADTEKERQNRRMQQMAAQMGMLNPMLVNQ--VGMQYNAYQQV 241
Query: 130 KDLQILRGSQQTSKGCAFL 148
Q L A+L
Sbjct: 242 LQQQSLAAQTNAMASAAYL 260
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 359 (131.4 bits), Expect = 2.0e-32, P = 2.0e-32
Identities = 87/261 (33%), Positives = 135/261 (51%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+K+FVGQ+P+ E +F+++ V NI++DK+T+AS+GCCFV R++A +A
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQG 114
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A HN K + G P+Q+K AD E R E KLFIG L K +E + +F+ +G I+D +
Sbjct: 115 ALHNIKVIEGMHHPVQMKPADTE-NRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LR S+GCAF+ + + A+ A + ++ MEG S PLVVK+ADT+K+
Sbjct: 174 LRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADTQKDKDVKTKSM 233
Query: 195 XXXXXNNLPNADSQHPSLFGAL-PMGYAPPYNGYGYQASGSY-GLMQYRLPPMQNQPGFH 252
P + SL L P G YQA S L+ + Q
Sbjct: 234 ITGSGAGSPKGGAA--SLLQNLNPALLQQLGGGQNYQAVASLLSLINGQQGQQQQHQQQQ 291
Query: 253 GIIPPVNQGNAMRGASPDLSS 273
++ + GN + G +P +++
Sbjct: 292 NVLGILGTGNPLLG-NPAMAA 311
Score = 149 (57.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 39/125 (31%), Positives = 64/125 (51%)
Query: 61 VICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVS 120
V+ P + +NA K T P ++ V + E + K+F+G +P+ +E +
Sbjct: 18 VVVPIAEST--VINA---KDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCR 72
Query: 121 ALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179
LF YG++ ILR S Q SKGC F+ + ++ A+ A A++ +EG P+ +K
Sbjct: 73 RLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMK 132
Query: 180 WADTE 184
ADTE
Sbjct: 133 PADTE 137
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 70/173 (40%), Positives = 111/173 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+++ + E+ +IKDK T +GC F+ +R+ A KA +
Sbjct: 7 IKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H G + P+QVK AD E + KLF+GML K S+ +V +F +G I + +
Sbjct: 67 ALHYSSGYSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDECTV 126
Query: 135 LRGSQQTSK-GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSK GCAF+K+++ +A +A+ +++G + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVKFADTEKE 179
Score = 175 (66.7 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 35/85 (41%), Positives = 50/85 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K ++ + +F+ F +DE +++ + GC FV S EA A+N+
Sbjct: 96 KLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINS 155
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +TLPGASS L VK+AD E ER
Sbjct: 156 LHGSRTLPGASSSLVVKFADTEKER 180
Score = 71 (30.1 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 359 VFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPASAQTAIQA 417
Query: 163 ING 165
+NG
Sbjct: 418 MNG 420
>UNIPROTKB|H9L0T2 [details] [associations]
symbol:H9L0T2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02043362 EMBL:AADN02043363
Ensembl:ENSGALT00000028399 Uniprot:H9L0T2
Length = 225
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 73/169 (43%), Positives = 104/169 (61%)
Query: 20 GQVPKHMTEAQLLAMFKEF-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78
GQ+P+++ E A K A +E+ ++KD+ T +GC F+ +R A KA A H
Sbjct: 22 GQIPRNLEEKGPQAANKNSSARSNELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHE 81
Query: 79 KKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG 137
+KTLPG + P+QVK AD E + KLF+GML K SE +V LF +G I + +LRG
Sbjct: 82 QKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRG 141
Query: 138 SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
SKGCAF+K+ + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 142 PDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 190
Score = 177 (67.4 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E +L +F+ F ++DE +++ S+GC FV S EA A++A
Sbjct: 108 KLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGN-SKGCAFVKFSSHTEAQAAIHA 166
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+PGASS L VK+AD + ER
Sbjct: 167 LHGSQTMPGASSSLVVKFADTDKER 191
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 59/131 (45%), Positives = 85/131 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 135 LRGSQQTSKGC 145
LRG TSKGC
Sbjct: 127 LRGPDGTSKGC 137
Score = 140 (54.3 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEA 162
KLF+G +P+++ E ++ +F +G I +L +++ KGCAFL Y ++ AL A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 163 INGKHKMEGSSVPLVVKWADTE 184
++ + + G + P+ VK AD+E
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSE 89
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 96/268 (35%), Positives = 127/268 (47%)
Query: 52 TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLP 111
T +GC F+ +R A KA A H +KTLPG + P+QVK AD E + KLF+GML
Sbjct: 17 THTHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLN 76
Query: 112 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSK-GCAFLKYETKEQALAALEAINGKHKME 170
K SE +V LF +G I + +LRG +SK GCAF+K+ + +A AA+ A++G M
Sbjct: 77 KQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQTMP 136
Query: 171 GSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ 230
G+S LVVK+ADT+KE L PSL LP PY+ Y Q
Sbjct: 137 GASSSLVVKFADTDKERTLRRMQQMVGQLGILT------PSL--TLPFS---PYSAYA-Q 184
Query: 231 ASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGS 290
A LMQ + + + + P V +S N P P SG
Sbjct: 185 A-----LMQQQTTVLSTSGSY--LSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSP 237
Query: 291 ---GYPAVPGLQYPM--------PYPGG 307
G AVPGL P+ P+PGG
Sbjct: 238 PLLGTAAVPGLVAPITNGFAGVVPFPGG 265
Score = 183 (69.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 44/128 (34%), Positives = 67/128 (52%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E +L +F+ F ++DE +++ + GC FV S EA A++A
Sbjct: 69 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHA 128
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
H +T+PGASS L VK+AD + ER ++ +G L + ++ FS Y Q
Sbjct: 129 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--Q 184
Query: 134 ILRGSQQT 141
L Q T
Sbjct: 185 ALMQQQTT 192
Score = 42 (19.8 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 18/70 (25%), Positives = 26/70 (37%)
Query: 243 PPMQNQPGFHGIIPPVNQGNA----MRGASPDLSSNM--GPRNYAMPPSGFVGSGYPAVP 296
PP+ G++ P+ G A G P L + G Y + +PA
Sbjct: 237 PPLLGTAAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFS 296
Query: 297 GLQ-YPMPYP 305
G+Q Y YP
Sbjct: 297 GVQQYTAMYP 306
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 283 (104.7 bits), Expect = 2.4e-24, P = 2.4e-24
Identities = 100/309 (32%), Positives = 143/309 (46%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+++ E L +F++F + E+ ++KD T +G + R ++A
Sbjct: 49 IKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGLRWWTHIRRDNPEEAPA 108
Query: 75 ACHNKKTLPGASSPLQVKYA----DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
A ++ L G P VK GE +R KLF+GML K SE +V LF +G I
Sbjct: 109 AAGGQREL-GLQRPGGVKLPPSSPSGEGDR---KLFVGMLNKQQSEEDVLRLFQPFGVID 164
Query: 131 DLQILRGSQQTSK-GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXX 189
+ +LRG +SK GCAF+K+ + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 165 ECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTL 224
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
L PSL LP PY+ Y QA LMQ + +
Sbjct: 225 RRMQQMVGQLGILT------PSL--TLPFS---PYSAYA-QA-----LMQQQTTVLSTSG 267
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGS---GYPAVPGLQYPM---- 302
+ + P V +S N P P SG G VPGL P+
Sbjct: 268 SY--LSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTATVPGLVAPITNGF 325
Query: 303 ----PYPGG 307
P+PGG
Sbjct: 326 AGVVPFPGG 334
>TAIR|locus:2065190 [details] [associations]
symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
Length = 512
Score = 266 (98.7 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 59/179 (32%), Positives = 101/179 (56%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KL+V + K TE + +F+++ V E+ + KDK T CF+ +E + A+ A
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 76 CHNKKTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSEAEVSALFSIY 126
+ T PG P++V++A+ E ER+ KL++ L K ++ EV+ +FS Y
Sbjct: 171 LTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQTTKMEVNEVFSRY 230
Query: 127 GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185
G I+D+ + + +G AF+++ KE ALAA++A+NG + GS PL+V++AD +K
Sbjct: 231 GIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFADPKK 289
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 234 (87.4 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 52/128 (40%), Positives = 79/128 (61%)
Query: 64 PSRQEADKAVNACHNKKTLPGA---SSPLQVKYADGEL--ERLEHKLFIGMLPKNVSEAE 118
P + A + +CH+ P + LQ+K A+ E E L+ KLF+GML K +E +
Sbjct: 11 PKVEFAQQVTVSCHHPLIPPAIKLMNRALQLKPAENESRSEHLDRKLFVGMLSKQQTEDD 70
Query: 119 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178
V +F +GTI++ ILRG SKGCAF+K+ ++++A +A+ ++G M G+S LVV
Sbjct: 71 VRQIFHPFGTIEECTILRGPDGASKGCAFVKFGSQQEAQSAITNLHGSQTMPGASSSLVV 130
Query: 179 KWADTEKE 186
K+ADTEKE
Sbjct: 131 KYADTEKE 138
Score = 190 (71.9 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 75/269 (27%), Positives = 109/269 (40%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K TE + +F F ++E I++ AS+GC FV S+QEA A+
Sbjct: 56 KLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDG-ASKGCAFVKFGSQQEAQSAITN 114
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ-- 133
H +T+PGASS L VKYAD E ER ++ N+ V FS YG Q
Sbjct: 115 LHGSQTMPGASSSLVVKYADTEKERQIRRMQQMAGHMNLLNPFVFNQFSPYGAYAQQQQQ 174
Query: 134 -ILRGSQQTSKGCAFLKYETKEQALAAL--EAINGKHK---MEGSSVPLVVKWADT---E 184
L + T+ G A Y ALA +NG + + ++P A+T +
Sbjct: 175 AALMAAAATAPGSA-AAYMNPMAALATQIPHGLNGTGQPPSLPSPTMPNFNMGANTPNGQ 233
Query: 185 KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPP 244
N Q + F P+ P G +G +Q+ P
Sbjct: 234 PGGAAAAAAAAAAADGVFTNGIPQ--TAFPGHPLHLTIPPQGL---PNGDAATLQHAFPG 288
Query: 245 MQNQPGFHGIIPPVNQGNAMRGASPDLSS 273
+ P F G+ P G + P L++
Sbjct: 289 L---PPFPGVAFPAVYGQFPQALPPPLAA 314
Score = 37 (18.1 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 291 GYPAVPGLQYPMPY 304
G P PG+ +P Y
Sbjct: 288 GLPPFPGVAFPAVY 301
>UNIPROTKB|K7EQ97 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587819 Uniprot:K7EQ97
Length = 154
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 51/99 (51%), Positives = 67/99 (67%)
Query: 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAF 147
P+QVK AD E R + KLF+GML K SE +V LF +G I++ ILRG SKGCAF
Sbjct: 4 PIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAF 62
Query: 148 LKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 63 VKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 101
Score = 170 (64.9 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 19 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 77
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 78 LHGSQTMPGASSSLVVKFADTDKERTMRRM 107
>UNIPROTKB|B4DFI3 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 UniGene:Hs.655747 HGNC:HGNC:14058 EMBL:AK294109
IPI:IPI00645373 SMR:B4DFI3 STRING:B4DFI3 Ensembl:ENST00000334293
Uniprot:B4DFI3
Length = 320
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 81/232 (34%), Positives = 107/232 (46%)
Query: 88 PLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCA 146
P+QVK AD E + KLF+GML K SE +V LF +G I + +LRG +SKGCA
Sbjct: 4 PIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCA 63
Query: 147 FLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNAD 206
F+K+ + +A AA+ A++G M G+S LVVK+ADT+KE L
Sbjct: 64 FVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT--- 120
Query: 207 SQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRG 266
PSL LP PY+ Y QA LMQ + + + + P V
Sbjct: 121 ---PSL--TLPFS---PYSAYA-QA-----LMQQQTTVLSTSGSY--LSPGVAFSPCHIQ 164
Query: 267 ASPDLSSNMGPRNYAMPPSGFVGS---GYPAVPGLQYPM--------PYPGG 307
+S N P P SG G AVPGL P+ P+PGG
Sbjct: 165 QIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGG 216
Score = 182 (69.1 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 45/128 (35%), Positives = 69/128 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E +L +F+ F ++DE +++ +S+GC FV S EA A++A
Sbjct: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDG-SSKGCAFVKFSSHTEAQAAIHA 79
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
H +T+PGASS L VK+AD + ER ++ +G L + ++ FS Y Q
Sbjct: 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--Q 135
Query: 134 ILRGSQQT 141
L Q T
Sbjct: 136 ALMQQQTT 143
Score = 42 (19.8 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 18/70 (25%), Positives = 26/70 (37%)
Query: 243 PPMQNQPGFHGIIPPVNQGNA----MRGASPDLSSNM--GPRNYAMPPSGFVGSGYPAVP 296
PP+ G++ P+ G A G P L + G Y + +PA
Sbjct: 188 PPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFS 247
Query: 297 GLQ-YPMPYP 305
G+Q Y YP
Sbjct: 248 GVQQYTAMYP 257
>UNIPROTKB|K7EJK3 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589229 Uniprot:K7EJK3
Length = 162
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 51/109 (46%), Positives = 68/109 (62%)
Query: 88 PLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG 137
P+QVK AD E L + + KLF+GML K SE +V LF +G I++ ILRG
Sbjct: 4 PIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRG 63
Query: 138 SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 64 PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 112
Score = 170 (64.9 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 30 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 88
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 89 LHGSQTMPGASSSLVVKFADTDKERTMRRM 118
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCC--FVICPSRQEADK 71
+ L + +P+ MTE++L +F +F + + II+ + T S CC FV S ++A
Sbjct: 40 KTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGIS--CCYGFVDYVSERQAAA 97
Query: 72 AVNACHNKKTLPGASSPLQVKYA-DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
AVN +T L+V +A E E L++G LP + E +V LF+ YG I
Sbjct: 98 AVNGMDGYET---RGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIV 154
Query: 131 DLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
D+ +LR S+G AFL++E A A ++ ++ +EG+S PL VK+ + EK+
Sbjct: 155 DVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMD-RYMIEGASRPLTVKFVEREKK 210
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 220 (82.5 bits), Expect = 5.5e-17, P = 5.5e-17
Identities = 54/171 (31%), Positives = 98/171 (57%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+N+++ +V +FS +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
>UNIPROTKB|F1M3I9 [details] [associations]
symbol:Brunol4 "Protein Brunol4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00358672
Ensembl:ENSRNOT00000019548 ArrayExpress:F1M3I9 Uniprot:F1M3I9
Length = 306
Score = 213 (80.0 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 43/83 (51%), Positives = 57/83 (68%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163
KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A+
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61
Query: 164 NGKHKMEGSSVPLVVKWADTEKE 186
+G M G+S LVVK+ADT+KE
Sbjct: 62 HGSQTMPGASSSLVVKFADTDKE 84
Score = 170 (64.9 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 60
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 61 LHGSQTMPGASSSLVVKFADTDKERTMRRM 90
Score = 41 (19.5 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 139 QQTSKGCAFLKYETKEQALAALEAING 165
QQ +G F+ ++ A A++A+NG
Sbjct: 260 QQQREG--FVSFDNPASAQTAIQAMNG 284
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 214 (80.4 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 53/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 214 (80.4 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 52/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F ++ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 214 (80.4 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 53/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 27 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 86
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 87 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 143
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 144 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 192
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 215 (80.7 bits), Expect = 6.5e-16, P = 6.5e-16
Identities = 43/85 (50%), Positives = 58/85 (68%)
Query: 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161
+ KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+
Sbjct: 8 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 67
Query: 162 AINGKHKMEGSSVPLVVKWADTEKE 186
A++G M G+S LVVK+ADT+KE
Sbjct: 68 ALHGSQTMPGASSSLVVKFADTDKE 92
Score = 170 (64.9 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 10 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 68
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 69 LHGSQTMPGASSSLVVKFADTDKERTMRRM 98
Score = 80 (33.2 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 278 LFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 336
Query: 163 ING 165
+NG
Sbjct: 337 MNG 339
>UNIPROTKB|F1SAI1 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381
OMA:SAMESIN EMBL:CU442705 EMBL:FP102263 Ensembl:ENSSSCT00000004150
Uniprot:F1SAI1
Length = 371
Score = 215 (80.7 bits), Expect = 7.5e-16, P = 7.5e-16
Identities = 43/85 (50%), Positives = 58/85 (68%)
Query: 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161
+ KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+
Sbjct: 18 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 77
Query: 162 AINGKHKMEGSSVPLVVKWADTEKE 186
A++G M G+S LVVK+ADT+KE
Sbjct: 78 ALHGSQTMPGASSSLVVKFADTDKE 102
Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 20 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 78
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 79 LHGSQTMPGASSSLVVKFADTDKERTMRRM 108
Score = 69 (29.3 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163
LFI LP+ +AE+ +F +G I + + Q SK F+ ++ A A++A+
Sbjct: 289 LFICHLPQEFGDAELMQMFLPFGNGISSKAFVDRTNQ-SKCFGFVSFDNPASAQTAIQAM 347
Query: 164 NG 165
NG
Sbjct: 348 NG 349
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 214 (80.4 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 53/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 46 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 105
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 106 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 162
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 163 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 211
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 212 (79.7 bits), Expect = 8.6e-16, P = 8.6e-16
Identities = 53/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+++++ +V +FS +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITNFNG-HKPPGSSEPITVKFA 184
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 215 (80.7 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 43/101 (42%), Positives = 67/101 (66%)
Query: 88 PLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC 145
P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I++ +ILRG S+GC
Sbjct: 4 PIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGC 63
Query: 146 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
AF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 64 AFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 104
Score = 161 (61.7 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 80
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 81 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 110
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 215 (80.7 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 43/101 (42%), Positives = 67/101 (66%)
Query: 88 PLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC 145
P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I++ +ILRG S+GC
Sbjct: 4 PIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGC 63
Query: 146 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
AF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 64 AFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 104
Score = 161 (61.7 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 80
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 81 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 110
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 213 (80.0 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 43/83 (51%), Positives = 57/83 (68%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163
KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A+
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61
Query: 164 NGKHKMEGSSVPLVVKWADTEKE 186
+G M G+S LVVK+ADT+KE
Sbjct: 62 HGSQTMPGASSSLVVKFADTDKE 84
Score = 170 (64.9 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 60
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 61 LHGSQTMPGASSSLVVKFADTDKERTMRRM 90
Score = 70 (29.7 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
L I LP+ +AE+ +F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 272 LLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQ-SKCFGFVSFDNPASAQTAIQA 330
Query: 163 ING 165
+NG
Sbjct: 331 MNG 333
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 210 (79.0 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 52/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
+ + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 79 STLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 210 (79.0 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 52/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
+ + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 79 STLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
>UNIPROTKB|Q0V9L3 [details] [associations]
symbol:celf4 "CUGBP Elav-like family member 4" species:8364
"Xenopus (Silurana) tropicalis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 CTD:56853 EMBL:BC121490 RefSeq:NP_001072378.1
UniGene:Str.35078 ProteinModelPortal:Q0V9L3 SMR:Q0V9L3
GeneID:779831 KEGG:xtr:779831 Xenbase:XB-GENE-5873699
Uniprot:Q0V9L3
Length = 424
Score = 198 (74.8 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 47 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 106
Query: 75 ACHNKKTLPGASSPLQVKYADGE 97
A H +KTLPG + P+QVK AD E
Sbjct: 107 ALHEQKTLPGMNRPIQVKPADSE 129
Score = 151 (58.2 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEA 162
KLFIG +P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A
Sbjct: 48 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 107
Query: 163 INGKHKMEGSSVPLVVKWADTE 184
++ + + G + P+ VK AD+E
Sbjct: 108 LHEQKTLPGMNRPIQVKPADSE 129
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 127 GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
G + +Q+ ++ GCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 116 GMNRPIQVKPADSESRGGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 175
Score = 123 (48.4 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 47 IKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKL 105
+K + + GC FV S EA A+NA H +T+PGASS L VK+AD + ER ++
Sbjct: 123 VKPADSESRGGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 181
Score = 43 (20.2 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
LFI LP+ +AE+ +F +G +
Sbjct: 361 LFIYHLPQEFGDAELMQMFLPFGFV 385
Score = 41 (19.5 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 147 FLKYETKEQALAALEAING 165
F+ ++ A AA++A+NG
Sbjct: 384 FVSFDNPASAQAAIQAMNG 402
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 212 (79.7 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 83/302 (27%), Positives = 134/302 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+PA G +P P+P G +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPA-HGHSHPHPFPPGGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 209 (78.6 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 42/85 (49%), Positives = 58/85 (68%)
Query: 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161
+ KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+
Sbjct: 2 DRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAIS 61
Query: 162 AINGKHKMEGSSVPLVVKWADTEKE 186
+++G M G+S LVVK+ADT+KE
Sbjct: 62 SLHGSQTMPGASSSLVVKFADTDKE 86
Score = 166 (63.5 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ AS+GC FV S EA A+++
Sbjct: 4 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDG-ASKGCAFVKYSSHAEAQAAISS 62
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+PGASS L VK+AD + ER
Sbjct: 63 LHGSQTMPGASSSLVVKFADTDKER 87
Score = 83 (34.3 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE++ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 271 LFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPTSAQAAIQA 329
Query: 163 ING 165
+NG
Sbjct: 330 MNG 332
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 209 (78.6 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 82/302 (27%), Positives = 133/302 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+P G +P P+P G +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPG-HGHSHPHPFPPGGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 208 (78.3 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 82/302 (27%), Positives = 133/302 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+P G +P P+P G +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPG-HGHSHPHPFPPGGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 208 (78.3 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 82/302 (27%), Positives = 133/302 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+P G +P P+P G +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPG-HGHSHPHPFPPGGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 208 (78.3 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 82/302 (27%), Positives = 133/302 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+P G +P P+P G +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPG-HGHSHPHPFPPGGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 204 (76.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 51/171 (29%), Positives = 96/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V +A E ++ L+I LP+ +++ +V +F +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVKFA 184
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 201 (75.8 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 51/171 (29%), Positives = 95/171 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V A E ++ L+I LP+ +++ +V +F +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVKFA 184
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 202 (76.2 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILL-DQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 121 (47.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 65 (27.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 164 NG 165
NG
Sbjct: 346 NG 347
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 202 (76.2 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILL-DQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 121 (47.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 65 (27.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 164 NG 165
NG
Sbjct: 346 NG 347
>UNIPROTKB|F1P311 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02033464 IPI:IPI01017320
Ensembl:ENSGALT00000038509 ArrayExpress:F1P311 Uniprot:F1P311
Length = 328
Score = 199 (75.1 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 40/95 (42%), Positives = 62/95 (65%)
Query: 94 ADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 151
AD E + KLFIGM+ K +E ++ +FS +G I++ +ILRG S+GCAF+ +
Sbjct: 2 ADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFT 61
Query: 152 TKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 62 TRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 96
Score = 179 (68.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 48/156 (30%), Positives = 77/156 (49%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 14 KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 72
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 73 MHQAQTMEGCSSPIVVKFADTQKDK-EQKRIAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 128
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + L+ +T + L ++ H M G
Sbjct: 129 -GPQYLALYLQLLQ-QTAAASSGNLNTLSSLHPMGG 162
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 200 (75.5 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 47/176 (26%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ ++ LFS YG I
Sbjct: 97 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153
Query: 133 QIL--RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL + + S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 154 RILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 114 (45.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 25/85 (29%), Positives = 48/85 (56%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAVNA 75
L+V +PK M++ + +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 126 LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKG 185
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 186 LNGQKPL-GAAEPITVKFANNPSQK 209
Score = 65 (27.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 164 NG 165
NG
Sbjct: 338 NG 339
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 202 (76.2 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 81/302 (26%), Positives = 132/302 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+P G +P P+P +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPG-HGHSHPHPFPPSGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 200 (75.5 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 121 (47.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 65 (27.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 164 NG 165
NG
Sbjct: 346 NG 347
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 200 (75.5 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 121 (47.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 65 (27.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 164 NG 165
NG
Sbjct: 346 NG 347
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 200 (75.5 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 121 (47.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 65 (27.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 164 NG 165
NG
Sbjct: 346 NG 347
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 200 (75.5 bits), Expect = 6.3e-14, P = 6.3e-14
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 121 (47.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 65 (27.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 164 NG 165
NG
Sbjct: 347 NG 348
>UNIPROTKB|F1P022 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02039408 EMBL:AADN02039409
EMBL:AADN02039410 EMBL:AADN02039411 EMBL:AADN02039412
EMBL:AADN02039413 EMBL:AADN02039414 EMBL:AADN02039415
EMBL:AADN02039416 EMBL:AADN02039417 EMBL:AADN02039418
EMBL:AADN02039419 EMBL:AADN02039420 EMBL:AADN02039421
EMBL:AADN02039422 EMBL:AADN02039423 EMBL:AADN02039424
EMBL:AADN02039425 EMBL:AADN02039426 EMBL:AADN02039427
EMBL:AADN02039428 EMBL:AADN02039429 EMBL:AADN02039430
EMBL:AADN02039431 EMBL:AADN02039432 EMBL:AADN02039433
IPI:IPI00574286 Ensembl:ENSGALT00000040033 ArrayExpress:F1P022
Uniprot:F1P022
Length = 325
Score = 198 (74.8 bits), Expect = 6.3e-14, P = 6.3e-14
Identities = 40/95 (42%), Positives = 62/95 (65%)
Query: 94 ADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 151
AD E + KLFIGM+ K +E ++ +FS +G I++ +ILRG S+GCAF+ +
Sbjct: 2 ADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFS 61
Query: 152 TKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 62 TRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 96
Score = 171 (65.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 14 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 72
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLF--IGMLPKNVSEAEVSALFSIYG-TIKDL 132
H +T+ G SSP+ VK+AD + ++ + +L + + ++ A L + G T + L
Sbjct: 73 MHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYL 132
Query: 133 QILRGSQQTSKGC 145
+L+ + +S GC
Sbjct: 133 ALLQQATSSSNGC 145
>UNIPROTKB|E9PSH0 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 EMBL:AC090559
HGNC:HGNC:2549 ChiTaRS:CELF1 GO:GO:0006376 IPI:IPI00984001
ProteinModelPortal:E9PSH0 SMR:E9PSH0 Ensembl:ENST00000530151
ArrayExpress:E9PSH0 Bgee:E9PSH0 Uniprot:E9PSH0
Length = 95
Score = 182 (69.1 bits), Expect = 8.1e-14, P = 8.1e-14
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVK 92
NA HN K LPG P+Q+K
Sbjct: 76 QNALHNMKVLPGMHHPIQMK 95
Score = 130 (50.8 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAAL 160
K+F+G +P+ SE ++ LF YG + ++ +LR Q SKGC F+ + T++ AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 161 EAINGKHKMEGSSVPLVVK 179
A++ + G P+ +K
Sbjct: 77 NALHNMKVLPGMHHPIQMK 95
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 197 (74.4 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 187 NGQKP-PGATEPITVKFANNPSQK 209
Score = 63 (27.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 164 NG 165
NG
Sbjct: 325 NG 326
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 197 (74.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 187 NGQKP-PGATEPITVKFANNPSQK 209
Score = 63 (27.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 164 NG 165
NG
Sbjct: 338 NG 339
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 197 (74.4 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 187 NGQKP-PGATEPITVKFANNPSQK 209
Score = 63 (27.2 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 164 NG 165
NG
Sbjct: 339 NG 340
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 197 (74.4 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 66 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 125
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 126 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 182
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 183 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 236
Score = 129 (50.5 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 215 NGQKP-PGATEPITVKFANNPSQK 237
Score = 63 (27.2 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 164 NG 165
NG
Sbjct: 366 NG 367
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 197 (74.4 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 127 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 183
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 184 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 237
Score = 129 (50.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 216 NGQKP-PGATEPITVKFANNPSQK 238
Score = 68 (29.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 164 NGKHKMEGSSVPLVVKWADTEK 185
NG +++ G V V K T K
Sbjct: 368 NG-YRL-GDRVLQVFKTNKTHK 387
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 197 (74.4 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 127 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 183
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 184 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 237
Score = 129 (50.5 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 216 NGQKP-PGATEPITVKFANNPSQK 238
Score = 63 (27.2 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 164 NG 165
NG
Sbjct: 367 NG 368
>ZFIN|ZDB-GENE-070912-150 [details] [associations]
symbol:si:ch211-168n8.1 "si:ch211-168n8.1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070912-150 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CT027714 IPI:IPI00833044 Ensembl:ENSDART00000122509
Uniprot:E7F1Z5
Length = 187
Score = 178 (67.7 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 109 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168
ML K +E +V LF YG I++ +LRG SKGCAF+K+ T +A +A+ ++G
Sbjct: 1 MLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHTEAQSAIGGLHGSQT 60
Query: 169 MEGSSVPLVVKWADTEKE 186
M G+S LVVK+ADT+KE
Sbjct: 61 MPGASSSLVVKFADTDKE 78
Score = 144 (55.7 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 24 KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83
K TE + +F+ + +++E +++ S+GC FV + EA A+ H +T+P
Sbjct: 4 KQQTEEDVYRLFEPYGVIEECTVLRGPDGN-SKGCAFVKFSTHTEAQSAIGGLHGSQTMP 62
Query: 84 GASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGT 128
GASS L VK+AD + ER ++ +G + V+ FS Y +
Sbjct: 63 GASSSLVVKFADTDKERTIRRMQQMVGQF--GIFNPSVALPFSTYSS 107
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 194 (73.4 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 43 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 102
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 103 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 159
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 160 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 213
Score = 123 (48.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 192 NGQKP-SGATEPITVKFANNPSQKSSQAL 219
Score = 65 (27.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 164 NG 165
NG
Sbjct: 330 NG 331
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 195 (73.7 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 48/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAI 126
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS +G I
Sbjct: 127 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITS 183
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 184 RILV-DQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 237
Score = 134 (52.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F +F + I+ D+ T SRG F+ R EA++A+
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K PGA+ P+ VK+A+ ++ L
Sbjct: 216 NGQKP-PGATEPITVKFANNPSQKSSQAL 243
Score = 62 (26.9 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 164 NG 165
NG
Sbjct: 367 NG 368
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 195 (73.7 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 86/312 (27%), Positives = 136/312 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E+ L + + V VN+ KD+ T +G FV ++AD A+
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + ++ +F+G L V E + FS +G I + +
Sbjct: 75 NMIK-LYG--KPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGS-SVPLVVKWADTEKEXXXXX 191
I+R TSKG AF+ + + E + ALEA+NG+ + +V K D++ E
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK-RDSKGERHGTA 190
Query: 192 XXXXXXXXNNLPNADSQHPSLFGALPMGYAP--PYNGYGYQAS---GSYGLMQYRLPPMQ 246
N L D H +F +P+G P G A+ + G Y+ PP+
Sbjct: 191 AERMLAAQNPLFPKDRPH-QVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLM 249
Query: 247 N--QPGFHGIIPPVNQGN-AMRGASPDL--SSNMGPRNYAMPPSGFVGSGYPAVPGLQYP 301
Q G+ G PPV ++ P + + M PR P SG P PG
Sbjct: 250 GMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT-- 307
Query: 302 MPYPGGMLGHRP 313
P P GM G P
Sbjct: 308 -PGPPGMPGMPP 318
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 195 (73.7 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 86/312 (27%), Positives = 136/312 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E+ L + + V VN+ KD+ T +G FV ++AD A+
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + ++ +F+G L V E + FS +G I + +
Sbjct: 75 NMIK-LYG--KPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGS-SVPLVVKWADTEKEXXXXX 191
I+R TSKG AF+ + + E + ALEA+NG+ + +V K D++ E
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK-RDSKGERHGTA 190
Query: 192 XXXXXXXXNNLPNADSQHPSLFGALPMGYAP--PYNGYGYQAS---GSYGLMQYRLPPMQ 246
N L D H +F +P+G P G A+ + G Y+ PP+
Sbjct: 191 AERMLAAQNPLFPKDRPH-QVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLM 249
Query: 247 N--QPGFHGIIPPVNQGN-AMRGASPDL--SSNMGPRNYAMPPSGFVGSGYPAVPGLQYP 301
Q G+ G PPV ++ P + + M PR P SG P PG
Sbjct: 250 GMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT-- 307
Query: 302 MPYPGGMLGHRP 313
P P GM G P
Sbjct: 308 -PGPPGMPGMPP 318
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 194 (73.4 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215
Score = 123 (48.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221
Score = 65 (27.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 164 NG 165
NG
Sbjct: 345 NG 346
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 194 (73.4 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215
Score = 123 (48.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221
Score = 65 (27.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 164 NG 165
NG
Sbjct: 345 NG 346
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 194 (73.4 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220
Score = 124 (48.7 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 199 NGQKP-SGATEPITVKFANNPSQKTSQAL 226
Score = 65 (27.9 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 164 NG 165
NG
Sbjct: 350 NG 351
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 194 (73.4 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220
Score = 123 (48.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 199 NGQKP-SGATEPITVKFANNPSQKSSQAL 226
Score = 65 (27.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 164 NG 165
NG
Sbjct: 350 NG 351
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 194 (73.4 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 208
Score = 123 (48.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 187 NGQKP-SGATEPITVKFANNPSQKSSQAL 214
Score = 65 (27.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 164 NG 165
NG
Sbjct: 352 NG 353
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 194 (73.4 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 208
Score = 123 (48.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 187 NGQKP-SGATEPITVKFANNPSQKSSQAL 214
Score = 65 (27.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 164 NG 165
NG
Sbjct: 352 NG 353
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 194 (73.4 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215
Score = 123 (48.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221
Score = 65 (27.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 164 NG 165
NG
Sbjct: 359 NG 360
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 194 (73.4 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215
Score = 123 (48.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221
Score = 65 (27.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 164 NG 165
NG
Sbjct: 359 NG 360
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 194 (73.4 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 61 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 120
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 121 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 177
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 178 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 231
Score = 123 (48.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 210 NGQKP-SGATEPITVKFANNPSQKSSQAL 237
Score = 65 (27.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 164 NG 165
NG
Sbjct: 361 NG 362
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 194 (73.4 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 49 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 108
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 109 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 165
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 166 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 219
Score = 123 (48.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 198 NGQKP-SGATEPITVKFANNPSQKSSQAL 225
Score = 65 (27.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 164 NG 165
NG
Sbjct: 363 NG 364
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 194 (73.4 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220
Score = 123 (48.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 199 NGQKP-SGATEPITVKFANNPSQKSSQAL 226
Score = 65 (27.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 164 NG 165
NG
Sbjct: 364 NG 365
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 194 (73.4 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220
Score = 123 (48.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 199 NGQKP-SGATEPITVKFANNPSQKSSQAL 226
Score = 65 (27.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 164 NG 165
NG
Sbjct: 364 NG 365
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 194 (73.4 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 87 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 146
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 147 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 203
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 204 RILV-DQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGAAEPITVKFANNPSQ 257
Score = 124 (48.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 236 NGQKP-SGAAEPITVKFANNPSQKTSQAL 263
Score = 65 (27.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 164 NG 165
NG
Sbjct: 387 NG 388
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 193 (73.0 bits), Expect = 8.0e-13, P = 8.0e-13
Identities = 50/176 (28%), Positives = 98/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P+ M++ ++ ++F F V+ +I+DK T S G FV +++A+KA+
Sbjct: 109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 168
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
NA + + + ++V A E ++ L++ LPKN++++++ +LFS YG I
Sbjct: 169 NALNGLRL---QNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITS 225
Query: 133 QIL----RGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
+IL G SKG F++++ + +A A++ +NG + S+ P+ VK+A+
Sbjct: 226 RILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTP-KNSTEPITVKFAN 280
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 173 (66.0 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 43/156 (27%), Positives = 85/156 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGK 166
+IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|K7ES14 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 HGNC:HGNC:14058 Ensembl:ENST00000588350
Uniprot:K7ES14
Length = 295
Score = 187 (70.9 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 70/210 (33%), Positives = 93/210 (44%)
Query: 109 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168
ML K SE +V LF +G I + +LRG +SKGCAF+K+ + +A AA+ A++G
Sbjct: 1 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 60
Query: 169 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 228
M G+S LVVK+ADT+KE L PSL LP PY+ Y
Sbjct: 61 MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT------PSL--TLPFS---PYSAYA 109
Query: 229 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFV 288
QA LMQ + + + + P V +S N P P SG
Sbjct: 110 -QA-----LMQQQTTVLSTSGSY--LSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH 161
Query: 289 GS---GYPAVPGLQYPM--------PYPGG 307
G AVPGL P+ P+PGG
Sbjct: 162 SPPLLGTTAVPGLVAPITNGFAGVVPFPGG 191
Score = 158 (60.7 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 40/120 (33%), Positives = 63/120 (52%)
Query: 24 KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83
K +E +L +F+ F ++DE +++ +S+GC FV S EA A++A H +T+P
Sbjct: 4 KQQSEEDVLRLFQPFGVIDECTVLRGPDG-SSKGCAFVKFSSHTEAQAAIHALHGSQTMP 62
Query: 84 GASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT 141
GASS L VK+AD + ER ++ +G L + ++ FS Y Q L Q T
Sbjct: 63 GASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--QALMQQQTT 118
Score = 42 (19.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 18/70 (25%), Positives = 26/70 (37%)
Query: 243 PPMQNQPGFHGIIPPVNQGNA----MRGASPDLSSNM--GPRNYAMPPSGFVGSGYPAVP 296
PP+ G++ P+ G A G P L + G Y + +PA
Sbjct: 163 PPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFS 222
Query: 297 GLQ-YPMPYP 305
G+Q Y YP
Sbjct: 223 GVQQYTAMYP 232
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 191 (72.3 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 49/177 (27%), Positives = 97/177 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SRGCCFVICPSRQEADKA 72
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA
Sbjct: 65 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKA 124
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131
+N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 125 INTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 132 LQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 182 SRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 236
Score = 140 (54.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 28/89 (31%), Positives = 52/89 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K PGA+ P+ VK+A+ +++ H +
Sbjct: 215 NGQKP-PGATEPITVKFANNPSQKVNHTI 242
Score = 65 (27.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 16/82 (19%), Positives = 42/82 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 164 NGKHKMEGSSVPLVVKWADTEK 185
NG +++ + + K + T K
Sbjct: 368 NG-YRLGDRVLQVSFKTSKTHK 388
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 190 (71.9 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 187 NGQKP-PGATEPITVKFANNPSQK 209
Score = 63 (27.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 164 NG 165
NG
Sbjct: 338 NG 339
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 190 (71.9 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 187 NGQKP-PGATEPITVKFANNPSQK 209
Score = 63 (27.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 164 NG 165
NG
Sbjct: 338 NG 339
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 191 (72.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 90/309 (29%), Positives = 134/309 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP + G+ LPP P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSVPTPVVTALGPGVTPPGLPP----P 240
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPP-SGFVGSGYPAVP-GLQYPMPY--- 304
G PPV AM P + M P MPP +G G A P G P P+
Sbjct: 241 G--SFPPPVPPPGAM---PPGMPPAMPPP--PMPPGAGAPGPPTGAAPTGGHPPHPHAFP 293
Query: 305 PGGMLGHRP 313
PGGM H P
Sbjct: 294 PGGM--HHP 300
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 190 (71.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 48/176 (27%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P+ MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 66 KTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAI 125
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 126 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 182
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K ++ P+ VK+A+ +
Sbjct: 183 RILV-DQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ-KPPAATEPITVKFANNPSQ 236
Score = 123 (48.4 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K P A+ P+ VK+A+ ++
Sbjct: 215 NGQKP-PAATEPITVKFANNPSQK 237
Score = 63 (27.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 164 NG 165
NG
Sbjct: 367 NG 368
>ZFIN|ZDB-GENE-070620-21 [details] [associations]
symbol:zgc:165603 "zgc:165603" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070620-21 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CABZ01080723 EMBL:CABZ01080724 EMBL:CABZ01080725
EMBL:CABZ01080726 EMBL:CABZ01080727 EMBL:BC142894 IPI:IPI00851471
RefSeq:NP_001092221.1 UniGene:Dr.154402 SMR:A5PLG5
Ensembl:ENSDART00000105482 GeneID:571425 KEGG:dre:571425
eggNOG:KOG0146 HOGENOM:HOG000286011 HOVERGEN:HBG090495 OMA:DGHESSP
NextBio:20890554 Uniprot:A5PLG5
Length = 155
Score = 170 (64.9 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 29/70 (41%), Positives = 48/70 (68%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F++F + E+ ++KD+ T +GC F+ +R+ A KA N
Sbjct: 82 IKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQN 141
Query: 75 ACHNKKTLPG 84
A H +KTLPG
Sbjct: 142 ALHEQKTLPG 151
Score = 133 (51.9 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 80 KTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS 138
K + G S P+ + G ++ + KLFIG +P+N+ E ++ LF +G I +L +L+
Sbjct: 59 KPMNG-SEPISIHPDSGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDR 117
Query: 139 QQ-TSKGCAFLKYETKEQALAALEAINGKHKMEG 171
KGCAFL Y +E A+ A A++ + + G
Sbjct: 118 YTGMHKGCAFLTYCARESAIKAQNALHEQKTLPG 151
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 144 (55.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 38/150 (25%), Positives = 67/150 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG++ +TEA L +F V + + +D TR S G +V ++A++
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D L + + +FI L + + F+ +G I ++
Sbjct: 104 -NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 162
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+ YET E A A++ +NG
Sbjct: 163 QDEFGVSKGYGFVHYETAEAANNAIKHVNG 192
Score = 99 (39.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 39/158 (24%), Positives = 69/158 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKA---V 73
+F+ + + L F F + + +D+ S+G FV + + A+ A V
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVHYETAEAANNAIKHV 190
Query: 74 NAC--HNKKTLPG---ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 128
N ++KK G + Q K+ E++ ++I + V + E LF +G
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFE--EMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE 248
Query: 129 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
I + R S+ S+G F+ + T E A AA+E +N K
Sbjct: 249 ITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDK 286
Score = 96 (38.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 48/189 (25%), Positives = 70/189 (37%)
Query: 142 SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNN 201
SKG F+ + + ++A A+ +N + + G PL V A K+ NN
Sbjct: 416 SKGFGFVCFSSPDEASKAVTEMN-QRMVNGK--PLYVALAQ-RKDVRRSQLEASIQARNN 471
Query: 202 LPNADSQHPSLFGALPMG----YAPPYNGY--GYQASGSYGLMQYRLPPMQNQPG-FHGI 254
+ + + G M Y P G+ G Q G + + M +PG + G
Sbjct: 472 IRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGP 531
Query: 255 IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPL 314
P QG RG P+ + P +P G G P G+ YPM G G R
Sbjct: 532 FPG-QQGG--RGVGPN--QQIPPNFQGLPMGAMQGPGIPN--GMGYPM-VQGQFGGGRGR 583
Query: 315 NNSPGSVSP 323
PG P
Sbjct: 584 GQVPGMGGP 592
Score = 80 (33.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 33/156 (21%), Positives = 67/156 (42%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+++ + + + + +F++F + + +D + SRG FV + + A AV
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAVEEM 283
Query: 77 HNK-----KTLPGASSP-------LQVKYADGELERLEH----KLFIGMLPKNVSEAEVS 120
++K K G + L+ +Y +E+ L++ L +V + ++
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 156
LF YGTI +++R + A + ETKE A
Sbjct: 344 ELFGPYGTITSAKVMRDTAPVET--ATPESETKESA 377
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 186 (70.5 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 56/202 (27%), Positives = 96/202 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L V +P+ MT+ +L A+F+ ++ I++D T S G FV S ++ +A+
Sbjct: 127 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 186
Query: 77 HNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N T+ + L+V YA E ++ L++ LP+ +++ ++ +F YG+I IL
Sbjct: 187 -NGITV--RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNIL 243
Query: 136 RGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE-KEXXXXXXX 193
R +G AF++Y +E+A A+ A+N EG S PL V+ A+ K
Sbjct: 244 RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP-EGGSQPLSVRLAEEHGKAKAAHFMS 302
Query: 194 XXXXXXNNLPNADSQHPSLFGA 215
N+P Q P+ A
Sbjct: 303 QMGVVPANVPPPPPQPPAHMAA 324
>UNIPROTKB|E1C131 [details] [associations]
symbol:E1C131 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
IPI:IPI00822398 ProteinModelPortal:E1C131
Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
Length = 123
Score = 168 (64.2 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 52 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 111
Query: 75 ACHNKKTLPGAS 86
A H +KTLPG S
Sbjct: 112 ALHEQKTLPGVS 123
Score = 128 (50.1 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEA 162
KLFIG +P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A
Sbjct: 53 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 112
Query: 163 INGKHKMEGSS 173
++ + + G S
Sbjct: 113 LHEQKTLPGVS 123
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 186 (70.5 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 84/316 (26%), Positives = 131/316 (41%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP + + +PP P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSMPTPVMTALGAAMPIPGMPP----P 240
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
G +PP G G P + P A G G+P P +P GM
Sbjct: 241 GAFPPVPP--PGTMPPGMPPGMPMPPAPGTPAPQGGGGPPPGHPPFPPAGM---HPPGM- 294
Query: 310 GHRPL--NNSPGSVSP 323
H P+ PG V P
Sbjct: 295 PHMPMPPTGPPGMVPP 310
>UNIPROTKB|E9PKU1 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI00982591 ProteinModelPortal:E9PKU1 SMR:E9PKU1
Ensembl:ENST00000528434 ArrayExpress:E9PKU1 Bgee:E9PKU1
Uniprot:E9PKU1
Length = 114
Score = 165 (63.1 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 73 VNACHNKKTLPG 84
NA HN K LPG
Sbjct: 103 QNALHNMKVLPG 114
Score = 128 (50.1 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 86 SSPLQVKYADGELERLEH------KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ 139
SSP+ K +G L+ + K+F+G +P+ SE ++ LF YG + ++ +LR
Sbjct: 21 SSPVSKKM-NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRS 79
Query: 140 QT---SKGCAFLKYETKEQALAALEAINGKHKME 170
Q SKGC F+ + T++ AALEA N H M+
Sbjct: 80 QNPPQSKGCCFVTFYTRK---AALEAQNALHNMK 110
>UNIPROTKB|E9PQK4 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI00982054 ProteinModelPortal:E9PQK4 SMR:E9PQK4
Ensembl:ENST00000525841 ArrayExpress:E9PQK4 Bgee:E9PQK4
Uniprot:E9PQK4
Length = 87
Score = 165 (63.1 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPG 84
NA HN K LPG
Sbjct: 76 QNALHNMKVLPG 87
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAAL 160
K+F+G +P+ SE ++ LF YG + ++ +LR Q SKGC F+ + T++ AAL
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK---AAL 73
Query: 161 EAINGKHKME 170
EA N H M+
Sbjct: 74 EAQNALHNMK 83
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 181 (68.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 87/309 (28%), Positives = 136/309 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + ++E L +F + V V + KD+ T + F+ S ++AD A+
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTI-KDLQ 133
+ K L G P++V A + + L+ LFIG L +V E + FS +G I + +
Sbjct: 87 NMIK-LHG--KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R S+G F+ Y++ E + AA+E++ G++ S+ + V +A DT+ E
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYL---SNRQITVSYAYKKDTKGERHG 200
Query: 190 XXXXXXXXXXNNLPNADSQHP-SLFGALPMGYAPPYNGYGYQ-ASGSYGLMQYRLPPMQN 247
N P A P +LF P AP NG A+GS MQ P
Sbjct: 201 TPAERLLAATN--PTAQKSRPHTLFAMGPPSSAPQVNGLPRPFANGS---MQPVPIPAPR 255
Query: 248 QPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAM--PPSGF-VGSGYPAVPGLQYPMPY 304
QP PP Q + P S P+ ++M PP F G P P Q+ + +
Sbjct: 256 QPP-----PPPPQ--VYQTQPPSWPSQ--PQQHSMVPPPMQFRPPQGMPPPPPPQF-LNH 305
Query: 305 PGGMLGHRP 313
G G RP
Sbjct: 306 QQGFGGPRP 314
>UNIPROTKB|F6UBL3 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
Length = 133
Score = 162 (62.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 17 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 76
Query: 75 ACHNKKTLPG 84
A H +KTLPG
Sbjct: 77 ALHEQKTLPG 86
Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEA 162
KLF+G +P+ + E ++ LF +G I +L +L+ KGCAFL Y ++ AL A A
Sbjct: 18 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 77
Query: 163 INGKHKMEG 171
++ + + G
Sbjct: 78 LHEQKTLPG 86
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 179 (68.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 52/182 (28%), Positives = 98/182 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT----RASR-------GCCFVI 62
R L V +P++MT+ +L ++F V+ +I+DK R+S G FV
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVN 78
Query: 63 CPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSA 121
+ ++A++A+N + + S ++V +A E ++ L+I LP+ +++ +V
Sbjct: 79 YLNAKDAERAINTLNGLRL---QSKTIKVSFARPSSESIKDANLYISGLPRTMTQKDVED 135
Query: 122 LFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179
+F +G I + ++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK
Sbjct: 136 MFLPFGHIINSRVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVK 193
Query: 180 WA 181
+A
Sbjct: 194 FA 195
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 179 (68.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 44/170 (25%), Positives = 93/170 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++M++ +L ++F V+ +I+DK S G FV + +A++A+
Sbjct: 33 KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAI 92
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
+ + + S ++V YA + ++ L+I LPK +++ +V +F YG I +
Sbjct: 93 STLNGLRL---QSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINS 149
Query: 133 QILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L S+G AF++++ + +A A++ +NG+ K G++ + VK+A
Sbjct: 150 RVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ-KPPGAAEQMTVKFA 198
>UNIPROTKB|Q3ZC34 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OrthoDB:EOG469QV2 EMBL:BC102935 IPI:IPI00706755
RefSeq:NP_001029537.1 UniGene:Bt.87430 HSSP:Q15434
ProteinModelPortal:Q3ZC34 SMR:Q3ZC34 PRIDE:Q3ZC34
Ensembl:ENSBTAT00000023705 GeneID:509798 KEGG:bta:509798 CTD:5939
InParanoid:Q3ZC34 OMA:SQQMAPP NextBio:20869135 Uniprot:Q3ZC34
Length = 407
Score = 178 (67.7 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 84/320 (26%), Positives = 133/320 (41%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 55 KTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 114
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 115 TALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTR 165
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-K----MEGSSVPLVVKWADTEKEXX 188
ILR + TS+G F + E+ E+ A + NGK+ K + S PL+ K+AD +
Sbjct: 166 ILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKR 225
Query: 189 XXXXXXXXXXXNNLPNADSQHPSLF----GALPMGYAP-PYNGYGYQASGSYGLMQYRLP 243
N D +L AL G+ P PYN + L Y
Sbjct: 226 QNQGKFVQNGRAWPRNGDMGGMALTYDPSTALQNGFYPAPYNLAPNRMLTQSALSPYLPS 285
Query: 244 PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMP 303
PM + V Q + ++ SP S M ++Y M PSG V PG+ +P+
Sbjct: 286 PMTSYQR-------VTQTSPLQAPSP---SWMHHQSYLMQPSGSV-----LTPGMDHPIS 330
Query: 304 Y-PGGMLGHRPLNNSPGSVS 322
P M+G PL G +S
Sbjct: 331 LQPASMVG--PLTQQLGHLS 348
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 177 (67.4 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 48/178 (26%), Positives = 94/178 (52%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK--------TTRASRGCCFVICPS 65
+ L + +P++M++ +L ++F V+ +I+DK T S G FV +
Sbjct: 55 KTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVN 114
Query: 66 RQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFS 124
+A++A+N + + S ++V YA + ++ L+I LPK +++ V +F+
Sbjct: 115 PSDAERAINTLNGLRL---QSKTIKVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMFT 171
Query: 125 IYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
YG I + +IL S+G AF++++ + +A A++ +NG K G+S P+ VK+A
Sbjct: 172 QYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGS-KPSGASEPITVKFA 228
>UNIPROTKB|B3KWE6 [details] [associations]
symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
highly similar to Homo sapiens bruno-like 6, RNA binding protein,
mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
Length = 342
Score = 165 (63.1 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 109 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168
ML K E +V LF +G I++ +LR TSKGCAF+K+ ++ +A AA+ ++G
Sbjct: 1 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRT 60
Query: 169 MEGSSVPLVVKWADTEKE 186
M G+S LVVK ADT++E
Sbjct: 61 MAGASSSLVVKLADTDRE 78
Score = 121 (47.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 24 KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83
K E + +F+ F ++E +++ S+GC FV S+ EA A+ H +T+
Sbjct: 4 KQQGEEDVRRLFQPFGHIEECTVLRSPDG-TSKGCAFVKFGSQGEAQAAIRGLHGSRTMA 62
Query: 84 GASSPLQVKYADGELER 100
GASS L VK AD + ER
Sbjct: 63 GASSSLVVKLADTDRER 79
Score = 74 (31.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE+ F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 259 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ-SKCFGFVSFDNPTSAQTAIQA 317
Query: 163 ING 165
+NG
Sbjct: 318 MNG 320
Score = 48 (22.0 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 289 GSGYPAVPGLQYPMPYPGGMLGHRPL----NNSPGS 320
GSG +PGL P P G+ G PL N PGS
Sbjct: 161 GSGPGTLPGL----PAPIGVNGFGPLTPQTNGQPGS 192
>UNIPROTKB|Q15434 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP
EMBL:D28483 EMBL:BC027863 EMBL:BC072679 IPI:IPI00003706 PIR:S47660
RefSeq:NP_002889.1 UniGene:Hs.505729 UniGene:Hs.683360 PDB:1X4E
PDBsum:1X4E ProteinModelPortal:Q15434 SMR:Q15434 IntAct:Q15434
STRING:Q15434 PhosphoSite:Q15434 DMDM:55976301 PRIDE:Q15434
Ensembl:ENST00000262031 GeneID:5939 KEGG:hsa:5939 UCSC:uc001sln.2
GeneCards:GC12P056915 HGNC:HGNC:9909 HPA:HPA039225 MIM:602387
neXtProt:NX_Q15434 PharmGKB:PA34275 InParanoid:Q15434
PhylomeDB:Q15434 EvolutionaryTrace:Q15434 GenomeRNAi:5939
NextBio:23154 ArrayExpress:Q15434 Bgee:Q15434 CleanEx:HS_RBMS2
Genevestigator:Q15434 GermOnline:ENSG00000076067 Uniprot:Q15434
Length = 407
Score = 177 (67.4 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 83/321 (25%), Positives = 134/321 (41%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 55 KTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 114
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 115 TALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTR 165
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-K----MEGSSVPLVVKWADTEKEXX 188
ILR + TS+G F + E+ E+ A + NGK+ K + S PL+ K+AD +
Sbjct: 166 ILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKR 225
Query: 189 XXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPP---YNGY---GYQASGSYGLMQYRL 242
NAD G + + Y P NG+ Y + + L Q L
Sbjct: 226 QNQGKFVQNGRAWPRNAD------MGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSAL 279
Query: 243 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPM 302
P + P V Q + ++ +P S M +Y M PSG V PG+ +P+
Sbjct: 280 SPYLSSPV--SSYQRVTQTSPLQVPNP---SWMHHHSYLMQPSGSV-----LTPGMDHPI 329
Query: 303 PY-PGGMLGHRPLNNSPGSVS 322
P M+G PL G +S
Sbjct: 330 SLQPASMMG--PLTQQLGHLS 348
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 173 (66.0 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 46/175 (26%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F+E + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+ +
Sbjct: 226 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 278
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 279 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 331
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 83/328 (25%), Positives = 126/328 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 307 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+ K D +
Sbjct: 364 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 415
Query: 185 -KEXXXXXXXXXXXXXNNL---PNADSQHP----SLFGALPMGYAPPYNGYGYQASGSYG 236
KE + P P G GY P Y GY YG
Sbjct: 416 RKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGRGGYGYPPDYYGYEDYYDDYYG 475
Query: 237 LMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGP---RNY-AMPPSGFVGSGY 292
+ P ++G + G A+RG P R A PP G G
Sbjct: 476 YDYHDYRGGYEDP-YYGY----DDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQ 530
Query: 293 PAVPGLQYPMPYPGGMLGHRPLNNSPGS 320
P L P GG G GS
Sbjct: 531 RGAP-LGPPRGSRGGRGGPAQQQRGRGS 557
Score = 47 (21.6 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 19/66 (28%), Positives = 24/66 (36%)
Query: 219 GYAPPYNGYGYQAS-GSYGLMQYRLP--PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNM 275
G PP G G G G Q P P + G G +G RGA + N+
Sbjct: 509 GAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGARGNRGGNV 568
Query: 276 GPRNYA 281
G + A
Sbjct: 569 GGKRKA 574
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 178 (67.7 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 46/177 (25%), Positives = 96/177 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
++K+FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 126 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 185
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDL 132
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+
Sbjct: 186 KLCDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDV 238
Query: 133 QILR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ ++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 239 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 293
Score = 128 (50.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 83/329 (25%), Positives = 126/329 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 209 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 268
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 269 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 325
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+ K D +
Sbjct: 326 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 377
Query: 185 -KEXXXXXXXXXXXXXNNL---PNADSQHPSLF-----GALPMGYAPPYNGYGYQASGSY 235
KE + P P G GY P Y GY Y
Sbjct: 378 RKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYY 437
Query: 236 GLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGP---RNY-AMPPSGFVGSG 291
G + P ++G + G A+RG P R A PP G G
Sbjct: 438 GYDYHDYRGGYEDP-YYGY----DDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYS 492
Query: 292 YPAVPGLQYPMPYPGGMLGHRPLNNSPGS 320
P L P GG G GS
Sbjct: 493 QRGAP-LGPPRGSRGGRGGPAQQQRGRGS 520
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 155 (59.6 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 39/150 (26%), Positives = 69/150 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG++ +TEA L +F + V + + +D TR S G +V + + +KA+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D L + + +FI L + + F+ +G I ++
Sbjct: 123 -NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 181
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+ YET E A A++ +NG
Sbjct: 182 QDENGNSKGYGFVHYETDEAASQAIKHVNG 211
Score = 69 (29.3 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 33/122 (27%), Positives = 42/122 (34%)
Query: 210 PSLFGALPMGYAPPYNGYGYQASG---SYGLMQYRLP----PMQNQPGFHGIIPPVNQGN 262
P G P G+A G G G YGL P P N P F + + Q +
Sbjct: 538 PGRPGQFPAGFAAQQGGRGAMPQGIPPMYGLPGQFPPQGPFPQPNNPQFLAAMQQIQQ-S 596
Query: 263 AMRGASPDLSSNMGPRNYAMPPSGFVG-SGYPAVPG---LQYPMPYPGGMLGHRPLNNSP 318
A+ G + GP +P G G +G P P Q P G G P
Sbjct: 597 ALAGGRGG-PAGRGPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGRAPAGAPA 655
Query: 319 GS 320
G+
Sbjct: 656 GA 657
Score = 64 (27.6 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 37/125 (29%), Positives = 48/125 (38%)
Query: 214 GALPMGYAPPYN-GYGYQAS-GSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDL 271
G +PM P G+ A G G M +PPM PG PP QG + +P
Sbjct: 532 GGMPMQPGRPGQFPAGFAAQQGGRGAMPQGIPPMYGLPGQ---FPP--QGPFPQPNNPQF 586
Query: 272 SSNMGP-RNYAMPPS--GFVGSGYPAVPGLQYP-MPYPGGMLGHRP--LNNSPGSVSPAV 325
+ M + A+ G G G P G+ P MP G+ G P PG+ A
Sbjct: 587 LAAMQQIQQSALAGGRGGPAGRG-PMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAA 645
Query: 326 ANSNP 330
A P
Sbjct: 646 AGRAP 650
Score = 46 (21.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 203 PNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250
PNA Q P G AP G + +G+ +Q +L + + PG
Sbjct: 631 PNARQQGPGAGRGAAAGRAPAGAPAGARGAGAPEGLQGQLAAVADNPG 678
Score = 40 (19.1 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 282 MPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRP 313
MPP+G G YP Q MP G G P
Sbjct: 519 MPPAGGRGMPYP-----QGGMPMQPGRPGQFP 545
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 175 (66.7 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 81/308 (26%), Positives = 123/308 (39%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
K+FVG + + T A+ L F ++ + + I+KD+ T RG FV DK +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHK---LFIGMLPKNVSEAEVSALFSIYGTIKDL 132
H + G ++ G + + K +F+G +P +V + E F +G +K+
Sbjct: 103 NH---IIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEH 159
Query: 133 QILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXX 191
QI+R S S+G F+ YE+ E + L A + ++ G+ V +K A+ +K
Sbjct: 160 QIMRDHSTGRSRGFGFVTYES-EDMVDHLLAKGNRIELSGTQVE--IKKAEPKKPNSVTT 216
Query: 192 XXXXXXXXNNLPNADSQHPSLFGA-LPMGYA-P--PYN---GYGYQASGSYGLMQYRLPP 244
+ N + +G GY P PY GYG SG YG
Sbjct: 217 PSKRFGDSRS--NFGGGYGDGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYGGYGGEFGG 274
Query: 245 MQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPY 304
G+ G + P +G G S G N G G GY PG Y Y
Sbjct: 275 YGGG-GYGGGVGPY-RGEPALGYSGRYGGGGGGYNRGGYSMGG-GGGYGGGPGDMYGGSY 331
Query: 305 --PGGMLG 310
PGG G
Sbjct: 332 GEPGGGYG 339
>UNIPROTKB|K7EPX2 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 Gene3D:3.30.70.330
HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386 EMBL:AC093332
EMBL:AC129908 Ensembl:ENST00000587924 Uniprot:K7EPX2
Length = 67
Score = 153 (58.9 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 33/64 (51%), Positives = 41/64 (64%)
Query: 88 PLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCA 146
P+QVK AD E + KLF+GML K SE +V LF +G I++ ILRG SKGCA
Sbjct: 4 PIQVKPADSESRGGKDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCA 63
Query: 147 FLKY 150
F+KY
Sbjct: 64 FVKY 67
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 172 (65.6 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 74/325 (22%), Positives = 140/325 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++G + + M E ++++F + +I++K T S G F+ S A++ +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT- 120
Query: 77 HNKKTLPGASSPLQVKYAD---GE----LERLEHKLFIGMLPKNVSEAEVSALF-SIYGT 128
+N +P ++ +A GE E +H +F+G L V++ +S F ++YG+
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGS 180
Query: 129 IKDLQI-LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEX 187
+K ++ L + SKG F+++ + + + A+ +NG++ S+ P+ + A +
Sbjct: 181 VKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYC---STRPMRIGPAANKNAL 237
Query: 188 XXXXXXXXXXXXNNLPNADSQHPSLF-GALPMGYAPPYNGYGYQASGSYG-LMQYRLPP- 244
N + D + ++F G L + G +G L+ ++PP
Sbjct: 238 PMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT---DDELKSIFGQFGELLHVKIPPG 294
Query: 245 -----MQ--NQPGFHGIIPPVNQ----GNAMR---GASPDLSSNMGPRN----YAMPPSG 286
+Q N+ + +N G ++R G SP+ S+ N Y PP
Sbjct: 295 KRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQP 354
Query: 287 FVGSGYPAVPGLQYPMPYPGGMLGH 311
G GY A P Q P Y GG G+
Sbjct: 355 QGGYGYAAQPPTQDPNAYYGGYTGY 379
>UNIPROTKB|F1P990 [details] [associations]
symbol:RBMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 CTD:5939 OMA:SQQMAPP EMBL:AAEX03006927
RefSeq:XP_538236.2 ProteinModelPortal:F1P990
Ensembl:ENSCAFT00000000217 GeneID:481115 KEGG:cfa:481115
Uniprot:F1P990
Length = 407
Score = 172 (65.6 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 83/322 (25%), Positives = 133/322 (41%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + T+ L+ + + + + I DK+T +G FV S A KAV
Sbjct: 55 KTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKSTNKCKGYGFVDFDSPSAAQKAV 114
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 115 TALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTR 165
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP-----LVVKWADTEKEXX 188
ILR + TS+G F + E+ E+ A + NGK+ + VP L+ K+AD +
Sbjct: 166 ILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPAGVPAPSDPLLCKFADGGPKKR 225
Query: 189 XXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPP---YNGYGYQASGSYGLMQYRLPPM 245
N D G + + Y P NG+ Y A Y + R M
Sbjct: 226 QNQGKYVQNGRAWPRNGD------MGGMALTYDPTTALQNGF-YPAP--YNITPNR---M 273
Query: 246 QNQPGFHGIIP-PVNQGNAMRGASPDLSSN---MGPRNYAMPPSGFVGSGYPAVPGLQYP 301
Q +P PV+ + SP N M ++Y M PSG V P PG+ +P
Sbjct: 274 LAQSALSPYLPSPVSSYQRVTQTSPLQVPNPSWMHHQSYLMQPSGSV---LP--PGMDHP 328
Query: 302 MPY-PGGMLGHRPLNNSPGSVS 322
+ P M+G PL G +S
Sbjct: 329 ISLQPASMMG--PLTQQLGHLS 348
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 168 (64.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 57/222 (25%), Positives = 106/222 (47%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++F+G +P+ + E L + +E + EV ++KD+ + S+G FV ++ A KA+
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQI 134
H+K+ G + ++ + L +++LFIG +PKN +E E + G ++++++
Sbjct: 177 LHSKE-FKGKT----IRCS---LSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228
Query: 135 LRGSQQTSK--GCAFLKYETKEQA-LAALEAINGKHKMEGSSVPLVVKWADTEK--EXXX 189
++ T++ G AF+ Y A + + I+ K+EG++ P V WAD + E
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNA-PTVT-WADPKSSPEHSA 286
Query: 190 XXXXXXXXXXNNLPNADS--QHPSLF---GALPMGYAPPYNG 226
N+P S Q LF G + PP G
Sbjct: 287 AAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKG 328
Score = 45 (20.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 266 GASPDLSSNMGPR--NYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
GA+P + + P +A P G +G+G PM Y G +
Sbjct: 382 GAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAM 427
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 169 (64.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 45/175 (25%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+ +
Sbjct: 226 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 278
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 279 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 331
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 83/328 (25%), Positives = 126/328 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 307 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+ K D +
Sbjct: 364 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 415
Query: 185 -KEXXXXXXXXXXXXXNNL---PNADSQHP----SLFGALPMGYAPPYNGYGYQASGSYG 236
KE + P P G GY P Y GY YG
Sbjct: 416 RKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGRGGYGYPPDYYGYEDYYDDYYG 475
Query: 237 LMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGP---RNY-AMPPSGFVGSGY 292
+ P ++G + G A+RG P R A PP G G
Sbjct: 476 YDYHDYRGGYEDP-YYGY----DDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQ 530
Query: 293 PAVPGLQYPMPYPGGMLGHRPLNNSPGS 320
P L P GG G GS
Sbjct: 531 RGAP-LGPPRGSRGGRGGPAQQQRGRGS 557
Score = 47 (21.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 19/66 (28%), Positives = 24/66 (36%)
Query: 219 GYAPPYNGYGYQAS-GSYGLMQYRLP--PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNM 275
G PP G G G G Q P P + G G +G RGA + N+
Sbjct: 509 GAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGARGNRGGNV 568
Query: 276 GPRNYA 281
G + A
Sbjct: 569 GGKRKA 574
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 173 (66.0 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 50/186 (26%), Positives = 100/186 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT--------RA-----SRGCCF 60
R L V +P+ MTE ++ ++F ++ V +I+DK+ +A S G F
Sbjct: 148 RTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGF 207
Query: 61 VICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV 119
V Q+A++AVN + + + ++V +A + ++ L++ LPK +++ E+
Sbjct: 208 VNYVRPQDAEQAVNVLNGLRL---QNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQEL 264
Query: 120 SALFSIYGTIKDLQILR--GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177
A+F+ +G I +IL+ G+ +KG F++++ +E+A A+ A+NG + P+V
Sbjct: 265 EAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTD-PIV 323
Query: 178 VKWADT 183
VK+++T
Sbjct: 324 VKFSNT 329
>FB|FBgn0052423 [details] [associations]
symbol:shep "alan shepard" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042332 "gravitaxis" evidence=IMP] [GO:0009629 "response to
gravity" evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:AE014296 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0009629 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HSSP:Q15434 OrthoDB:EOG4C8687 EMBL:AY060954
EMBL:AY060995 EMBL:AY094948 EMBL:AY118564 RefSeq:NP_001163350.1
RefSeq:NP_729054.3 RefSeq:NP_729055.1 RefSeq:NP_729056.1
RefSeq:NP_729057.2 UniGene:Dm.20861 ProteinModelPortal:Q8MSV2
SMR:Q8MSV2 MINT:MINT-339377 PaxDb:Q8MSV2 PRIDE:Q8MSV2
EnsemblMetazoa:FBtr0077172 GeneID:38605 KEGG:dme:Dmel_CG32423
UCSC:CG32423-RA CTD:38605 FlyBase:FBgn0052423 InParanoid:Q9VRK5
OMA:LVNMCAQ PhylomeDB:Q8MSV2 GenomeRNAi:38605 NextBio:809487
Bgee:Q8MSV2 Uniprot:Q8MSV2
Length = 578
Score = 168 (64.2 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 49/169 (28%), Positives = 83/169 (49%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + + T+ L+ M ++ + I DKTT +G FV A+ AV
Sbjct: 230 KTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAV 289
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
K L G +Q + A + E+ L+I LP + E ++ A+ S YG + +
Sbjct: 290 ------KGLQGKG--VQAQMAKQQ-EQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTR 340
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
ILR Q SKG F + E++E+ ++ NG + + G+ PL+VK+AD
Sbjct: 341 ILRDQQMNSKGVGFARMESREKCEQIIQMFNG-NTIPGAKDPLLVKFAD 388
Score = 126 (49.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++ +P H E L AM ++ V I++D+ S+G F SR++ ++ +
Sbjct: 312 LYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQM- 369
Query: 77 HNKKTLPGASSPLQVKYADG 96
N T+PGA PL VK+ADG
Sbjct: 370 FNGNTIPGAKDPLLVKFADG 389
Score = 47 (21.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 18/79 (22%), Positives = 32/79 (40%)
Query: 220 YAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFH------GIIPPVNQGNAMRGASPDLSS 273
++ P G GY +GS + Y + + +Q + PP+ + P+ +
Sbjct: 443 FSAPQVG-GYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLG----VTSYKPEAVN 497
Query: 274 NMGPRNYAMPPSGFVGSGY 292
+ PR +M SG G Y
Sbjct: 498 QVQPRGISMMVSGDTGVPY 516
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 173 (66.0 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 45/171 (26%), Positives = 94/171 (54%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG FV +++ A KAV
Sbjct: 164 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQKAVKL 223
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C+N + PG + + A+ ++LF+G +PK+ ++ ++ F+ + + D+ +
Sbjct: 224 CNNNEIRPGKHIGVCISVAN-------NRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVIL 276
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWAD 182
++ ++G FL YE K A A ++GK K+ G+ V V+WAD
Sbjct: 277 YHQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVV--TVEWAD 325
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 82/315 (26%), Positives = 131/315 (41%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+++ + +TE + +F +F + ++++KD+ + RG FV + + A KAV+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP-RGFGFVNYANHECAQKAVDEL 321
Query: 77 HNK-----KTLPGASSP-------LQVKYADGELERLEH----KLFIGMLPKNVSEAEVS 120
++K K G + L+ +Y +LE++ LFI L V + +
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
A FS +GTI +I+ Q SKG F+ Y T E+A A+ +N + + G PL V
Sbjct: 382 AEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN-QRMLAGK--PLYVAL 438
Query: 181 ADTEKEXXXXXXXXXXXXXNNLP-----NADSQHPSL-FGAL-PMGYAPPYNGYGYQASG 233
A KE N A + P++ +GA P+ Y P GY A+
Sbjct: 439 AQ-RKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGP--GGYPIPAAV 495
Query: 234 SYGLMQYRLP----PMQNQPGFHGIIP-----PVNQGNAMRGASPDLSSNMGPRNYAMPP 284
+ G +P PM PG P P G RG P M ++P
Sbjct: 496 N-GRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPAQGRPMMMPG-SVPS 553
Query: 285 SGFV-GSGYPAVPGL 298
+G PAVPG+
Sbjct: 554 AGPAEAEAVPAVPGM 568
Score = 148 (57.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 38/150 (25%), Positives = 70/150 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG++ +TEA L +F V + + +D TR S G +V + ++ +KA++
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D L ++ +FI L + + FS +G I ++
Sbjct: 142 -NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVA 200
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+KG F+ +++ E A AA+E +NG
Sbjct: 201 VDELGNAKGYGFVHFDSVESANAAIEHVNG 230
Score = 70 (29.7 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 276 GPRNYAMPPSGFVGSGYPAVPGLQYPMP-YPG 306
GP Y +P + G G P VPG PMP YPG
Sbjct: 485 GPGGYPIP-AAVNGRGMPMVPGHNGPMPMYPG 515
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 169 (64.5 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 45/175 (25%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 135 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 194
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+ +
Sbjct: 195 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 247
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 248 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 300
Score = 122 (48.0 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 47/173 (27%), Positives = 83/173 (47%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 216 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 275
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 276 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 332
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+
Sbjct: 333 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVL 377
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 173 (66.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 46/175 (26%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ S+ A +AV
Sbjct: 194 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQEAVKL 253
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C N + PG + + A+ ++LF+G +PKN ++ + F+ + + D+ +
Sbjct: 254 CDNYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFNKVTEGLVDVIL 306
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 307 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 359
Score = 130 (50.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 84/321 (26%), Positives = 128/321 (39%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 275 RLFVGSIPKNKTKENILEEFNKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 334
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 335 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 391
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A+ +NGK ++EG + +V+ K D +
Sbjct: 392 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMNEMNGK-EIEGEEIEIVLAKPPDKK 443
Query: 185 -KEXXXXXXXXXXXXXNNL---PNADSQHP----SLFGALPMGYAPPYNGYGYQASGSYG 236
KE + P P G GY P Y GY YG
Sbjct: 444 RKERQAARQASRSTAYEDYYYYPPPRMPPPIRGRGRGGRGGYGYPPDYYGYEDYYDDYYG 503
Query: 237 LMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMG----PRNY-AMPPSGFVGSG 291
+ P ++G + G A+RG G PR A PP G +G
Sbjct: 504 YDYHDYRGGYEDP-YYGY----DDGYAIRGRGGGGRGGRGAPPPPRGRGAPPPRG--RAG 556
Query: 292 YPAVPGLQYPMPYPGGMLGHR 312
Y + G PM P G G R
Sbjct: 557 Y-SQRGA--PMGPPRGARGGR 574
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 168 (64.2 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 58/276 (21%), Positives = 125/276 (45%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L + +P+ MT+ ++ ++F ++ +++DK T S G FV ++A +AV
Sbjct: 41 KTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAV 100
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
++ + + + ++V YA ++++ L++ +PK+++ E+ ++F +G I
Sbjct: 101 SSFNGLRL---QNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITS 157
Query: 133 QILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE-----KE 186
+IL + SKG F++++ K++A A++ +NG G S + VK+A+ K
Sbjct: 158 RILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIP-SGCSEQITVKFANNPASNNPKG 216
Query: 187 XXXXXXXXXXXXXNNLP-----NADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYR 241
+P A + + G PM +AP + Y Y G+ +
Sbjct: 217 LLSDLEAVQQAATTLVPLSTILGAPTLRATAGGIGPMHHAPITSKYRYSPMGAITAVSQP 276
Query: 242 LPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGP 277
+ + ++Q NA+ G +P ++ P
Sbjct: 277 TATLPADYLTTSALLQMSQLNALAGLNPFATATAVP 312
>UNIPROTKB|B4MM23 [details] [associations]
symbol:shep "Protein alan shepard" species:7260 "Drosophila
willistoni" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH963847 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_002062046.1 ProteinModelPortal:B4MM23 GeneID:6639197
KEGG:dwi:Dwil_GK17327 FlyBase:FBgn0219326 InParanoid:B4MM23
Uniprot:B4MM23
Length = 581
Score = 169 (64.5 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 48/169 (28%), Positives = 82/169 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + + T+ L+ M ++ + I DKTT +G FV A+ AV
Sbjct: 236 KTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAENAV 295
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
K G +Q + A + E+ L+I LP + E ++ A+ S YG + +
Sbjct: 296 KGLQAK----G----VQAQMAKQQ-EQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTR 346
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
ILR Q SKG F + E++E+ ++ NG + + G+ PL+VK+AD
Sbjct: 347 ILRDQQMNSKGVGFARMESREKCEQIIQMFNG-NTIPGAKDPLLVKFAD 394
Score = 126 (49.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++ +P H E L AM ++ V I++D+ S+G F SR++ ++ +
Sbjct: 318 LYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQM- 375
Query: 77 HNKKTLPGASSPLQVKYADG 96
N T+PGA PL VK+ADG
Sbjct: 376 FNGNTIPGAKDPLLVKFADG 395
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 169 (64.5 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 45/175 (25%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+ +
Sbjct: 226 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 278
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 279 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 331
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 61/236 (25%), Positives = 100/236 (42%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 307 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+ K D +
Sbjct: 364 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 415
Query: 185 -KEXXXXXXXXXXXXXNNL--PNADSQHPSLFGALPMG-YAPPYNGYGYQASGSYG 236
KE + P + G G Y P Y GY YG
Sbjct: 416 RKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGXYPPDYYGYEDYYDDYYG 471
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 169 (64.5 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 45/175 (25%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+ +
Sbjct: 226 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 278
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 279 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 331
Score = 128 (50.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 83/329 (25%), Positives = 126/329 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 307 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+ K D +
Sbjct: 364 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 415
Query: 185 -KEXXXXXXXXXXXXXNNL---PNADSQHPSLF-----GALPMGYAPPYNGYGYQASGSY 235
KE + P P G GY P Y GY Y
Sbjct: 416 RKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYY 475
Query: 236 GLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGP---RNY-AMPPSGFVGSG 291
G + P ++G + G A+RG P R A PP G G
Sbjct: 476 GYDYHDYRGGYEDP-YYGY----DDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYS 530
Query: 292 YPAVPGLQYPMPYPGGMLGHRPLNNSPGS 320
P L P GG G GS
Sbjct: 531 QRGAP-LGPPRGSRGGRGGPAQQQRGRGS 558
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 169 (64.5 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 45/175 (25%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+ +
Sbjct: 226 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 278
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 279 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 331
Score = 128 (50.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 83/329 (25%), Positives = 126/329 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 307 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+ K D +
Sbjct: 364 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 415
Query: 185 -KEXXXXXXXXXXXXXNNL---PNADSQHPSLF-----GALPMGYAPPYNGYGYQASGSY 235
KE + P P G GY P Y GY Y
Sbjct: 416 RKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYY 475
Query: 236 GLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGP---RNY-AMPPSGFVGSG 291
G + P ++G + G A+RG P R A PP G G
Sbjct: 476 GYDYHDYRGGYEDP-YYGY----DDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYS 530
Query: 292 YPAVPGLQYPMPYPGGMLGHRPLNNSPGS 320
P L P GG G GS
Sbjct: 531 QRGAP-LGPPRGSRGGRGGPAQQQRGRGS 558
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 169 (64.5 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 45/175 (25%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+ +
Sbjct: 226 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 278
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 279 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 331
Score = 128 (50.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 83/329 (25%), Positives = 126/329 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 307 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+ K D +
Sbjct: 364 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 415
Query: 185 -KEXXXXXXXXXXXXXNNL---PNADSQHPSLF-----GALPMGYAPPYNGYGYQASGSY 235
KE + P P G GY P Y GY Y
Sbjct: 416 RKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYY 475
Query: 236 GLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGP---RNY-AMPPSGFVGSG 291
G + P ++G + G A+RG P R A PP G G
Sbjct: 476 GYDYHDYRGGYEDP-YYGY----DDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYS 530
Query: 292 YPAVPGLQYPMPYPGGMLGHRPLNNSPGS 320
P L P GG G GS
Sbjct: 531 QRGAP-LGPPRGSRGGRGGPAQQQRGRGS 558
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 166 (63.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 47/176 (26%), Positives = 97/176 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ M E +L+ +F++ + E ++ + + +RG FV+ +R++A +A+
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEFSGE-NRGYAFVMYTTREKAQRAIQL 104
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSA-LFSIYGTIKDLQ 133
N + PG K+ G L++ +LFIG +PK+ + E+ + + + D+
Sbjct: 105 LDNYEIRPG-------KFI-GVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVI 156
Query: 134 ILRGS--QQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + + ++G AF++YE+ K A+A + I G ++ G ++ V WA+ EKE
Sbjct: 157 VYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQ--VDWAEPEKE 210
Score = 41 (19.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 263 AMRGASPDLSSNMGPRNYAMPP----SGFVGSGYPAVPGLQYPM 302
A + A +L + G PP SGF+ G ++P YPM
Sbjct: 441 AAQNALWNLDCSSGSSLNVSPPAPSGSGFLSFGCRSLPYPAYPM 484
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 169 (64.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 44/171 (25%), Positives = 94/171 (54%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ F++ + ++ ++ D + +RG F+ +++ A +AV
Sbjct: 227 EIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEAAQEAVKL 286
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C+N + PG + + A+ ++LF+G +PK+ ++ ++ FS + + D+ +
Sbjct: 287 CNNHEIRPGKHIGVCISVAN-------NRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 339
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWAD 182
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD
Sbjct: 340 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLV--TVEWAD 388
Score = 130 (50.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 76/309 (24%), Positives = 127/309 (41%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+LFVG +PK T+ Q++ F + L D + + + +RG CF+ + A +A
Sbjct: 308 RLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 367
Query: 74 NACHNKKTLPGASSPLQVKYADG------ELERLEHKLFIGMLPKNVSEAEVSALFSIYG 127
+ K + + V++AD E+ LF+ L +V+E + F +G
Sbjct: 368 RRLMSGKVKVWGNL-VTVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKAFGQFG 426
Query: 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV-VKWADTE-K 185
++ ++ L K AF+ + ++ A+ AL +NGK ++EG + +V K D + K
Sbjct: 427 NLERVKKL-------KDYAFVHFNDRDGAVKALTEMNGK-ELEGEHIEIVFAKPPDQKRK 478
Query: 186 EXXXXXXXXXXXXXNNLPN-ADSQHPSLF-----GALPMGYAPPYNGYGYQASGSY-GLM 238
E ++ Q P GA GY+ P + YGY+ Y G
Sbjct: 479 ERKAQRQAAKTQMYDDYYYYGPPQMPPPARGRGRGASRGGYSYPPDYYGYEDYYDYYGYD 538
Query: 239 QYRLPPMQNQP--GFHGIIPPVN----QGNAMRGASPDLSSNMG-PRNYA-MPPSGFVGS 290
+ + P G+ P +G+A G SP PR A P G G+
Sbjct: 539 YHNYRGGYDDPYFGYDDFQAPARGRGGRGSARGGTSPARGRGASAPRGRAGFPQRGGAGA 598
Query: 291 GYPAVPGLQ 299
G A GL+
Sbjct: 599 GPGASRGLR 607
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 168 (64.2 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 47/175 (26%), Positives = 91/175 (52%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++F G++PK M E +L+ +F+ ++ ++ ++ D T +RG FV +R+ A AV
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
N + PG L++ + L +LF+G +PK+ + E+ F + + ++ I
Sbjct: 225 LDNHEIKPGKC--LKINISVPNL-----RLFVGNIPKSKGKDEILEEFGKLTAGLYEVII 277
Query: 135 LRG--SQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE+ K +LA G+ K+ G + +V WAD ++E
Sbjct: 278 YSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI--IVDWADPQEE 330
>ZFIN|ZDB-GENE-030131-4967 [details] [associations]
symbol:rbms1a "RNA binding motif, single stranded
interacting protein 1a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4967 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CR792451
IPI:IPI00507907 Ensembl:ENSDART00000064860 Bgee:E7FAG7
Uniprot:E7FAG7
Length = 398
Score = 164 (62.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 87/318 (27%), Positives = 136/318 (42%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 56 KTNLYIRGLPPGTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPVSAQKAV 115
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A KT + +Q + A + E+ L++ LP ++ E E+ L +G + +
Sbjct: 116 AAL---KT-----NGVQAQMAKQQ-EQDPTNLYLSNLPVSMDEQELENLLKPFGQVVSTR 166
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-K----MEGSSVPLVVKWADTEKEXX 188
ILR + S+G F + E+ E+ A + NGK K M G+S PL+ K+AD ++
Sbjct: 167 ILRDTNGMSRGVGFARMESTEKCDAVISHFNGKFIKSSSGMLGASEPLLCKFADGGQKKR 226
Query: 189 XXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPP---YNGYGYQASGSYGLMQYRLPPM 245
+A+ + L G + + Y P NGY Y A + G RL
Sbjct: 227 QSQAKYIPNGRTWTRDAEVR---LSG-MTLTYDPNTALQNGY-YAAPYAMG---NRL--- 275
Query: 246 QNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPY- 304
QPG I P++ +P S M + Y M G V S P +++PM
Sbjct: 276 MTQPGVSPYISPISTYPVQ---NP---SWMPHQPYIMQHPGAVLS-----PSMEHPMSLQ 324
Query: 305 PGGMLGHRPLNNSPGSVS 322
P ML PL G +S
Sbjct: 325 PSAMLA--PLTQQMGHLS 340
>UNIPROTKB|E7ETU5 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 EMBL:AC104598 EMBL:AC131754 IPI:IPI00033611
HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105 SMR:E7ETU5
Ensembl:ENST00000409075 Ensembl:ENST00000409289
Ensembl:ENST00000409972 Uniprot:E7ETU5
Length = 370
Score = 163 (62.4 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 52/174 (29%), Positives = 84/174 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P H T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 28 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 87
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 88 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 138
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWAD 182
ILR S TS+G F + E+ E+ A + NGK K G S P L+ K+AD
Sbjct: 139 ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD 192
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 162 (62.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 54/224 (24%), Positives = 103/224 (45%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR------------------AS 55
R L V +P+ MT+ ++ ++F ++ +++DK + S
Sbjct: 25 RTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQS 84
Query: 56 RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNV 114
G FV ++A+KAVN + + + ++V YA E ++ L++ LPKN+
Sbjct: 85 LGYGFVNYVRAEDAEKAVNTLNGLRL---QNKVIKVSYARPSSESIKGANLYVSGLPKNL 141
Query: 115 SEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173
S+ ++ +F+ +G I +IL + SKG F++++ + +A A++ +NGK +G +
Sbjct: 142 SQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTP-KGYA 200
Query: 174 VPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALP 217
P+ VK+A+ P A + L GALP
Sbjct: 201 EPITVKFANNPSNSAKAQIAPPLTAYLT-PQAAAATRRLAGALP 243
>UNIPROTKB|P29558 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=NAS] [GO:0006260 "DNA
replication" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0003697
"single-stranded DNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
EMBL:AC092153 CTD:5937 eggNOG:NOG320163 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 EMBL:D28482 EMBL:X77494 EMBL:AC104598
EMBL:AC131754 EMBL:BC012992 EMBL:BC012993 EMBL:BC018951 EMBL:X64652
IPI:IPI00033611 IPI:IPI00929296 IPI:IPI00941661 PIR:I38042
PIR:S19873 PIR:S47659 PIR:S53612 RefSeq:NP_002888.1
RefSeq:NP_058520.1 UniGene:Hs.470412 PDB:1X5O PDBsum:1X5O
ProteinModelPortal:P29558 SMR:P29558 STRING:P29558
PhosphoSite:P29558 DMDM:55977783 PaxDb:P29558 PRIDE:P29558
DNASU:5937 Ensembl:ENST00000348849 GeneID:5937 KEGG:hsa:5937
UCSC:uc002ubn.3 UCSC:uc002ubo.3 GeneCards:GC02M161128
HGNC:HGNC:9907 HPA:HPA047943 MIM:602310 neXtProt:NX_P29558
PharmGKB:PA34273 InParanoid:P29558 PhylomeDB:P29558 ChiTaRS:RBMS1
EvolutionaryTrace:P29558 GenomeRNAi:5937 NextBio:23144
ArrayExpress:P29558 Bgee:P29558 CleanEx:HS_RBMS1
Genevestigator:P29558 GermOnline:ENSG00000153250 Uniprot:P29558
Length = 406
Score = 163 (62.4 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 52/174 (29%), Positives = 84/174 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P H T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 61 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 121 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 171
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWAD 182
ILR S TS+G F + E+ E+ A + NGK K G S P L+ K+AD
Sbjct: 172 ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD 225
>UNIPROTKB|O73664 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:P26378 GeneTree:ENSGT00630000089747 CTD:5937 eggNOG:NOG320163
HOGENOM:HOG000008467 HOVERGEN:HBG053108 EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 EMBL:AB009975 IPI:IPI00586219 RefSeq:NP_990355.1
UniGene:Gga.4540 SMR:O73664 Ensembl:ENSGALT00000018146
GeneID:395880 KEGG:gga:395880 NextBio:20815947 Uniprot:O73664
Length = 373
Score = 162 (62.1 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 52/174 (29%), Positives = 85/174 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 28 KTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 87
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 88 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 138
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWAD 182
ILR S TS+G F + E+ E+ A + NGK K G SVP L+ K+AD
Sbjct: 139 ILRDSSGTSRGVGFARMESTEKCEAVIAHFNGKFIKTPAGVSVPAEPLLCKFAD 192
>UNIPROTKB|B4DN88 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 HOGENOM:HOG000008467 HOVERGEN:HBG053108 OMA:THVQTAA
EMBL:AC104598 EMBL:AC131754 UniGene:Hs.470412 HGNC:HGNC:9907
ChiTaRS:RBMS1 EMBL:AC133105 EMBL:AK297812 IPI:IPI00102991
SMR:B4DN88 STRING:B4DN88 Ensembl:ENST00000392753 UCSC:uc002ubi.4
Uniprot:B4DN88
Length = 419
Score = 163 (62.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 52/174 (29%), Positives = 84/174 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P H T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 61 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 121 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 171
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWAD 182
ILR S TS+G F + E+ E+ A + NGK K G S P L+ K+AD
Sbjct: 172 ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD 225
>UNIPROTKB|B4HUE4 [details] [associations]
symbol:shep "Protein alan shepard" species:7238 "Drosophila
sechellia" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH480817 OrthoDB:EOG4C8687 RefSeq:XP_002035429.1
ProteinModelPortal:B4HUE4 EnsemblMetazoa:FBtr0196912 GeneID:6610863
KEGG:dse:Dsec_GM13927 FlyBase:FBgn0168857 Uniprot:B4HUE4
Length = 579
Score = 168 (64.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 49/169 (28%), Positives = 83/169 (49%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + + T+ L+ M ++ + I DKTT +G FV A+ AV
Sbjct: 230 KTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAV 289
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
K L G +Q + A + E+ L+I LP + E ++ A+ S YG + +
Sbjct: 290 ------KGLQGKG--VQAQMAKQQ-EQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTR 340
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
ILR Q SKG F + E++E+ ++ NG + + G+ PL+VK+AD
Sbjct: 341 ILRDQQMNSKGVGFARMESREKCEQIIQMFNG-NTIPGAKDPLLVKFAD 388
Score = 126 (49.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++ +P H E L AM ++ V I++D+ S+G F SR++ ++ +
Sbjct: 312 LYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQM- 369
Query: 77 HNKKTLPGASSPLQVKYADG 96
N T+PGA PL VK+ADG
Sbjct: 370 FNGNTIPGAKDPLLVKFADG 389
Score = 37 (18.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 17/76 (22%), Positives = 31/76 (40%)
Query: 220 YAPPYNGYGYQASGSYGLMQYRLPP-MQNQPGFHGIIPPVNQGNAMRGAS--PDLSSNMG 276
++ P G GY +GS + Y + + +Q + + + S P+ + +
Sbjct: 443 FSAPQVG-GYPVAGSQWIPGYMMTTQVDDQTSYSPQYMQMAAAPQLGVTSYKPEAVNQVQ 501
Query: 277 PRNYAMPPSGFVGSGY 292
PR +M SG G Y
Sbjct: 502 PRGISMMVSGDTGVPY 517
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 166 (63.5 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 44/150 (29%), Positives = 73/150 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +T++QL F + V V + +D TTR S G +V + Q+A +A+N
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N L G + + D L + +FI L K++ + FS +G I ++
Sbjct: 107 -NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVA 165
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
SKG F++Y+T E A A++ +NG
Sbjct: 166 VDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195
Score = 143 (55.4 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 75/329 (22%), Positives = 140/329 (42%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++V + + +++ +L +F EF + I++D + S+G FV + +A +AV+A
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVDAL 284
Query: 77 H-----NKKTLPGAS-------SPLQVKYADGELERLEHK----LFIGMLPKNVSEAEVS 120
+ +K+ G + + L+ K+ E + L++ L ++V++ ++
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
F+ +GTI +++R S+G F+ + T E+A A+ +NGK + + PL V
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIV---TKPLYVAL 401
Query: 181 ADTEKEXXXXXXXXXXXXXN-NLPNADSQHPSLF--GALPMGYAPPYNGYGYQA---SGS 234
A +++ N+P A ++ G PMG Y G G A
Sbjct: 402 AQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFY-GQGPPAMIPQPG 460
Query: 235 YGLMQYRLPPMQ--NQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGY 292
+G Q +P M+ P + +P + QG + G R A+P
Sbjct: 461 FGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQ-----Q 515
Query: 293 PAVPGLQYPMPYPGGMLGH--RPLNNSPG 319
P+ P +Q M G M + R +N PG
Sbjct: 516 PS-PMMQQQMHPRGRMYRYPQRDVNTMPG 543
>UNIPROTKB|B3NGA1 [details] [associations]
symbol:shep "Protein alan shepard" species:7220 "Drosophila
erecta" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH954178 OrthoDB:EOG4C8687 RefSeq:XP_001971976.1
ProteinModelPortal:B3NGA1 EnsemblMetazoa:FBtr0134193 GeneID:6544279
KEGG:der:Dere_GG14139 FlyBase:FBgn0106400 Uniprot:B3NGA1
Length = 582
Score = 168 (64.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 49/169 (28%), Positives = 83/169 (49%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + + T+ L+ M ++ + I DKTT +G FV A+ AV
Sbjct: 230 KTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAV 289
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
K L G +Q + A + E+ L+I LP + E ++ A+ S YG + +
Sbjct: 290 ------KGLQGKG--VQAQMAKQQ-EQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTR 340
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
ILR Q SKG F + E++E+ ++ NG + + G+ PL+VK+AD
Sbjct: 341 ILRDQQMNSKGVGFARMESREKCEQIIQMFNG-NTIPGAKDPLLVKFAD 388
Score = 126 (49.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++ +P H E L AM ++ V I++D+ S+G F SR++ ++ +
Sbjct: 312 LYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQM- 369
Query: 77 HNKKTLPGASSPLQVKYADG 96
N T+PGA PL VK+ADG
Sbjct: 370 FNGNTIPGAKDPLLVKFADG 389
Score = 37 (18.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 20/79 (25%), Positives = 31/79 (39%)
Query: 220 YAPPYNGYGYQASGSYGLMQYRLP-PMQNQPGFHGIIPPVNQGNA--MRGAS---PDLSS 273
++ P G GY +GS + Y + P+ P Q A G + P+ +
Sbjct: 443 FSAPQVG-GYPVAGSQWIPGYMMTQPITQVDDQTSYSPQYMQMAAAPQLGVTSYKPEAVN 501
Query: 274 NMGPRNYAMPPSGFVGSGY 292
+ PR +M SG G Y
Sbjct: 502 QVQPRGISMMVSGDTGVPY 520
>UNIPROTKB|B4PIS2 [details] [associations]
symbol:shep "Protein alan shepard" species:7245 "Drosophila
yakuba" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CM000159 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_002093780.1 ProteinModelPortal:B4PIS2
EnsemblMetazoa:FBtr0267086 GeneID:6533045 KEGG:dya:Dyak_GE20568
FlyBase:FBgn0237877 Uniprot:B4PIS2
Length = 582
Score = 168 (64.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 49/169 (28%), Positives = 83/169 (49%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + + T+ L+ M ++ + I DKTT +G FV A+ AV
Sbjct: 230 KTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAV 289
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
K L G +Q + A + E+ L+I LP + E ++ A+ S YG + +
Sbjct: 290 ------KGLQGKG--VQAQMAKQQ-EQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTR 340
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
ILR Q SKG F + E++E+ ++ NG + + G+ PL+VK+AD
Sbjct: 341 ILRDQQMNSKGVGFARMESREKCEQIIQMFNG-NTIPGAKDPLLVKFAD 388
Score = 126 (49.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++ +P H E L AM ++ V I++D+ S+G F SR++ ++ +
Sbjct: 312 LYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQM- 369
Query: 77 HNKKTLPGASSPLQVKYADG 96
N T+PGA PL VK+ADG
Sbjct: 370 FNGNTIPGAKDPLLVKFADG 389
Score = 37 (18.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 20/79 (25%), Positives = 31/79 (39%)
Query: 220 YAPPYNGYGYQASGSYGLMQYRLP-PMQNQPGFHGIIPPVNQGNA--MRGAS---PDLSS 273
++ P G GY +GS + Y + P+ P Q A G + P+ +
Sbjct: 443 FSAPQVG-GYPVAGSQWIPGYMMTQPITQVDDQTSYSPQYMQMAAAPQLGVTSYKPEAVN 501
Query: 274 NMGPRNYAMPPSGFVGSGY 292
+ PR +M SG G Y
Sbjct: 502 QVQPRGISMMVSGDTGVPY 520
>UNIPROTKB|B4LFQ9 [details] [associations]
symbol:shep "Protein alan shepard" species:7244 "Drosophila
virilis" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH940647 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_002046944.1 ProteinModelPortal:B4LFQ9 GeneID:6622264
KEGG:dvi:Dvir_GJ12205 FlyBase:FBgn0199455 InParanoid:B4LFQ9
Uniprot:B4LFQ9
Length = 595
Score = 165 (63.1 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 47/169 (27%), Positives = 82/169 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + + T+ L+ M ++ + I DKTT +G FV A+ AV
Sbjct: 242 KTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAV 301
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
K G +Q + A + E+ L+I LP + E ++ A+ + YG + +
Sbjct: 302 KGLQAK----G----VQAQMAKQQ-EQDPTNLYIANLPPHFKETDLEAMLAKYGQVVSTR 352
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
ILR Q SKG F + E++E+ ++ NG + + G+ PL+VK+AD
Sbjct: 353 ILRDQQMNSKGVGFARMESREKCEQIIQMFNG-NTIPGAKDPLLVKFAD 400
Score = 125 (49.1 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++ +P H E L AM ++ V I++D+ S+G F SR++ ++ +
Sbjct: 324 LYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQM- 381
Query: 77 HNKKTLPGASSPLQVKYADG 96
N T+PGA PL VK+ADG
Sbjct: 382 FNGNTIPGAKDPLLVKFADG 401
>UNIPROTKB|E1C5J3 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 OMA:THVQTAA EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 IPI:IPI00680409 ProteinModelPortal:E1C5J3
Ensembl:ENSGALT00000033119 ArrayExpress:E1C5J3 Uniprot:E1C5J3
Length = 395
Score = 162 (62.1 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 52/174 (29%), Positives = 85/174 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 53 KTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 112
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 113 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 163
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWAD 182
ILR S TS+G F + E+ E+ A + NGK K G SVP L+ K+AD
Sbjct: 164 ILRDSSGTSRGVGFARMESTEKCEAVIAHFNGKFIKTPAGVSVPAEPLLCKFAD 217
>UNIPROTKB|B4IX08 [details] [associations]
symbol:shep "Protein alan shepard" species:7222 "Drosophila
grimshawi" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH916366 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_001983966.1 ProteinModelPortal:B4IX08
EnsemblMetazoa:FBtr0150687 GeneID:6558604 KEGG:dgr:Dgri_GH15273
FlyBase:FBgn0122748 InParanoid:B4IX08 OMA:DDQYSSS Uniprot:B4IX08
Length = 609
Score = 165 (63.1 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 47/169 (27%), Positives = 82/169 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + + T+ L+ M ++ + I DKTT +G FV A+ AV
Sbjct: 256 KTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAV 315
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
K G +Q + A + E+ L+I LP + E ++ A+ + YG + +
Sbjct: 316 KGLQAK----G----VQAQMAKQQ-EQDPTNLYIANLPPHFKETDLEAMLAKYGQVVSTR 366
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
ILR Q SKG F + E++E+ ++ NG + + G+ PL+VK+AD
Sbjct: 367 ILRDQQMNSKGVGFARMESREKCEQIIQMFNG-NTIPGAKDPLLVKFAD 414
Score = 125 (49.1 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++ +P H E L AM ++ V I++D+ S+G F SR++ ++ +
Sbjct: 338 LYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQM- 395
Query: 77 HNKKTLPGASSPLQVKYADG 96
N T+PGA PL VK+ADG
Sbjct: 396 FNGNTIPGAKDPLLVKFADG 415
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 141 (54.7 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 53/182 (29%), Positives = 82/182 (45%)
Query: 48 KDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLE--HKL 105
KD+ T +G FV S ++AD A+ + K L G P++V A + L+ +
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIK-LYG--KPIRVNKASAHNKNLDVGANI 59
Query: 106 FIGMLPKNVSEAEVSALFSIYGTIKDL-QILRGSQQ-TSKGCAFLKYETKEQALAALEAI 163
FIG L + E + FS +G I +I+R SKG AF+ + + + + AA+EA+
Sbjct: 60 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 119
Query: 164 NGKHKMEGSSVPLVVKWA---DTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGY 220
NG++ P+ V +A D++ E N L AD H A P
Sbjct: 120 NGQYLCNR---PITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPS 176
Query: 221 AP 222
AP
Sbjct: 177 AP 178
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 162 (62.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 63/267 (23%), Positives = 115/267 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L + +P+ MT+ +L +F ++ I++D T S G FV + +++ A+
Sbjct: 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL 154
Query: 77 HNKKTLPGASSPLQVKYA-DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
+ + L+V YA G + L++ L +N+++ + +FS YG I IL
Sbjct: 155 NGFYV---RNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNIL 211
Query: 136 RGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
R +G AF++Y +E+A A++A+N EG S P+ V+ A+ +
Sbjct: 212 RDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVP-EGGSQPIWVRLAEEHGKAKAAQFMA 270
Query: 195 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGI 254
N H G PM PP++ + + + +PP +QP
Sbjct: 271 QIGGGNGGGGGGPPHMGPGG--PMH--PPHHHNNHHHNNHHNP---HMPPHHHQPQHPHQ 323
Query: 255 IPPVN-QGNAMRGASPDLSSNMGPRNY 280
P + Q + M+ P+ +N P N+
Sbjct: 324 HPQHHPQLHHMQHHHPNNHNNNHPNNH 350
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 161 (61.7 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ M E +L+ +F+ + E ++ + + +RG FV+ +++EA A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGE-NRGYAFVMYTTKEEAQLAIRI 120
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV-SALFSIYGTIKDLQ 133
+N + PG K+ G L++ +LFIG +PK + E+ + + + D+
Sbjct: 121 LNNYEIRPG-------KFI-GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVI 172
Query: 134 ILRGSQQTSK--GCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +K G AF++YE+ + A+A + I G ++ G ++ V WAD EKE
Sbjct: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ--VDWADPEKE 226
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 56/220 (25%), Positives = 98/220 (44%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAV 73
+LF+G +PK + ++L K+ V +V + T + +RG FV E+ +A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFV----EYESHRAA 197
Query: 74 NACHNKKTLPGA----SSPLQVKYADGELERLEHK------LFIGMLPKNVSEAEVSALF 123
A +K +PG +QV +AD E E E L++ L + +E + A F
Sbjct: 198 -AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 124 SIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KW 180
+ + G ++ ++ LR AF+ + +E A+AA+ +NGK ++G+S+ + + K
Sbjct: 257 NKFKPGAVERVKKLRDY-------AFVHFFNREDAVAAMSVMNGKC-IDGASIEVTLAKP 308
Query: 181 ADTEKEXXXXXXXXXXXXXNNL---PNADSQHPSLFGALP 217
+ E NL N + HP G LP
Sbjct: 309 VNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKLP 348
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 152 (58.6 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 43/171 (25%), Positives = 92/171 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D T +RG FV +++ A +AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
+N + G + + A+ ++LF+G +PK+ ++ ++ FS + + D+ +
Sbjct: 223 YNNHEIRSGKHIGVCISVAN-------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWAD 182
++ ++G FL+YE K A A ++GK K+ G+ V+WAD
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG--TVEWAD 324
Score = 53 (23.7 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 26/83 (31%), Positives = 28/83 (33%)
Query: 219 GYAPPYNGY-GYQASGSYGLMQYR---LPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSN 274
GY P Y GY Y Y YR P F + G RGA+P S
Sbjct: 454 GYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQ-VGARGRGGRGARGAAP--SRG 510
Query: 275 MGPRNYAMPPSGFVGSGYPAVPG 297
G A PP G G PG
Sbjct: 511 RG----AAPPRGRAGYSQRGGPG 529
Score = 43 (20.2 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 21/72 (29%), Positives = 26/72 (36%)
Query: 219 GYAPPYNGY-GYQ--ASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ-GNAMRGASPDLSSN 274
GY PY GY +Q A G G P + + G PP + G + RG
Sbjct: 479 GYEDPYYGYEDFQVGARGRGGRGARGAAPSRGR----GAAPPRGRAGYSQRGGPGSARGV 534
Query: 275 MGPRNYAMPPSG 286
G R A G
Sbjct: 535 RGARGGAQQQRG 546
Score = 38 (18.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 214 GALPM---GYAPPYNGYGYQASGSYG 236
GA P G APP GY G G
Sbjct: 504 GAAPSRGRGAAPPRGRAGYSQRGGPG 529
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 8/20 (40%), Positives = 8/20 (40%)
Query: 217 PMGYAPPYNGYGYQASGSYG 236
P PP G G G YG
Sbjct: 435 PPHMPPPTRGRGRGGRGGYG 454
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 161 (61.7 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ M E +L+ +F+ + E ++ + + +RG FV+ +++EA A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGE-NRGYAFVMYTTKEEAQLAIRI 120
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV-SALFSIYGTIKDLQ 133
+N + PG K+ G L++ +LFIG +PK + E+ + + + D+
Sbjct: 121 LNNYEIRPG-------KFI-GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVI 172
Query: 134 ILRGSQQTSK--GCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +K G AF++YE+ + A+A + I G ++ G ++ V WAD EKE
Sbjct: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ--VDWADPEKE 226
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 56/220 (25%), Positives = 98/220 (44%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAV 73
+LF+G +PK + ++L K+ V +V + T + +RG FV E+ +A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFV----EYESHRAA 197
Query: 74 NACHNKKTLPGA----SSPLQVKYADGELERLEHK------LFIGMLPKNVSEAEVSALF 123
A +K +PG +QV +AD E E E L++ L + +E + A F
Sbjct: 198 -AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 124 SIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KW 180
+ + G ++ ++ LR AF+ + +E A+AA+ +NGK ++G+S+ + + K
Sbjct: 257 NKFKPGAVERVKKLRDY-------AFVHFFNREDAVAAMSVMNGKC-IDGASIEVTLAKP 308
Query: 181 ADTEKEXXXXXXXXXXXXXNNL---PNADSQHPSLFGALP 217
+ E NL N + HP G LP
Sbjct: 309 VNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKLP 348
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 161 (61.7 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ M E +L+ +F+ + E ++ + + +RG FV+ +++EA A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGE-NRGYAFVMYTTKEEAQLAIRI 120
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV-SALFSIYGTIKDLQ 133
+N + PG K+ G L++ +LFIG +PK + E+ + + + D+
Sbjct: 121 LNNYEIRPG-------KFI-GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVI 172
Query: 134 ILRGSQQTSK--GCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +K G AF++YE+ + A+A + I G ++ G ++ V WAD EKE
Sbjct: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ--VDWADPEKE 226
Score = 115 (45.5 bits), Expect = 0.00077, P = 0.00077
Identities = 55/220 (25%), Positives = 97/220 (44%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAV 73
+LF+G +PK + ++L K+ V +V + T + +RG FV E+ +A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFV----EYESHRAA 197
Query: 74 NACHNKKTLPGA----SSPLQVKYADGELERLEHK------LFIGMLPKNVSEAEVSALF 123
A +K +PG +QV +AD E E E L++ L + +E + A F
Sbjct: 198 -AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 124 SIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KW 180
+ + G ++ ++ LR AF+ + +E A+AA+ +NGK ++G+S+ + + K
Sbjct: 257 NKFKPGAVERVKKLRDY-------AFVHFFNREDAVAAMSVMNGKC-IDGASIEVTLAKP 308
Query: 181 ADTEKEXXXXXXXXXXXXXNNL---PNADSQHPSLFGALP 217
+ E NL N + HP G P
Sbjct: 309 VNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKPP 348
>UNIPROTKB|B4KX02 [details] [associations]
symbol:shep "Protein alan shepard" species:7230 "Drosophila
mojavensis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH933809 OrthoDB:EOG4C8687 RefSeq:XP_002008147.1
ProteinModelPortal:B4KX02 EnsemblMetazoa:FBtr0162707 GeneID:6582444
KEGG:dmo:Dmoj_GI11982 FlyBase:FBgn0134739 InParanoid:B4KX02
Uniprot:B4KX02
Length = 592
Score = 162 (62.1 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 45/171 (26%), Positives = 81/171 (47%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + + T+ L+ M ++ + I DKTT +G FV A+ AV
Sbjct: 228 KTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAV 287
Query: 74 NACHNKKTLPG-ASSPLQVKYADG-ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131
K A + V + + E+ L+I LP + E ++ A+ + +G +
Sbjct: 288 KGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETDLEAMLAKFGQVVS 347
Query: 132 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
+ILR Q SKG F + E++E+ ++ NG + + G+ PL+VK+AD
Sbjct: 348 TRILRDQQMNSKGVGFARMESREKCEQIIQMFNG-NTITGAKDPLLVKFAD 397
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++ +P H E L AM +F V I++D+ S+G F SR++ ++ +
Sbjct: 321 LYIANLPPHFKETDLEAMLAKFGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQM- 378
Query: 77 HNKKTLPGASSPLQVKYADG 96
N T+ GA PL VK+ADG
Sbjct: 379 FNGNTITGAKDPLLVKFADG 398
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163
K+FIG +PK+V+E E+ + YGTI + + + Q+ +G AF+ YE + +A A+EA+
Sbjct: 8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEAL 67
Query: 164 NGKHKMEGSSVPLVVKWA 181
+ K S PL V++A
Sbjct: 68 DYKCIFPNSQRPLDVRFA 85
Score = 120 (47.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
K+F+G +PK +TE +L ++ + +V + T ++ RG F+ R EA KA+ A
Sbjct: 8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVP-ATAQSPRGWAFITYEQRSEAYKAIEA 66
Query: 76 CHNKKTLPGASSPLQVKYA 94
K P + PL V++A
Sbjct: 67 LDYKCIFPNSQRPLDVRFA 85
Score = 77 (32.2 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 18/75 (24%), Positives = 40/75 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164
+F+ LP + ++ E+ F +G + +I R + +KG F+ + E AL A++ ++
Sbjct: 152 VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMH 211
Query: 165 GKHKMEGSSVPLVVK 179
G + + G + + +K
Sbjct: 212 GFY-VSGKHLKVQLK 225
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163
K+FIG +PK+V+E E+ + YGTI + + + Q+ +G AF+ YE + +A A+EA+
Sbjct: 8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEAL 67
Query: 164 NGKHKMEGSSVPLVVKWA 181
+ K S PL V++A
Sbjct: 68 DYKCIFPNSQRPLDVRFA 85
Score = 120 (47.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
K+F+G +PK +TE +L ++ + +V + T ++ RG F+ R EA KA+ A
Sbjct: 8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVP-ATAQSPRGWAFITYEQRSEAYKAIEA 66
Query: 76 CHNKKTLPGASSPLQVKYA 94
K P + PL V++A
Sbjct: 67 LDYKCIFPNSQRPLDVRFA 85
Score = 77 (32.2 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 18/75 (24%), Positives = 40/75 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164
+F+ LP + ++ E+ F +G + +I R + +KG F+ + E AL A++ ++
Sbjct: 152 VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMH 211
Query: 165 GKHKMEGSSVPLVVK 179
G + + G + + +K
Sbjct: 212 GFY-VSGKHLKVQLK 225
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 161 (61.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ M E +L+ +F+ + E ++ + + +RG FV+ +++EA A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGE-NRGYAFVMYTTKEEAQLAIRI 120
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV-SALFSIYGTIKDLQ 133
+N + PG K+ G L++ +LFIG +PK + E+ + + + D+
Sbjct: 121 LNNYEIRPG-------KFI-GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVI 172
Query: 134 ILRGSQQTSK--GCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +K G AF++YE+ + A+A + I G ++ G ++ V WAD EKE
Sbjct: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ--VDWADPEKE 226
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 56/220 (25%), Positives = 98/220 (44%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAV 73
+LF+G +PK + ++L K+ V +V + T + +RG FV E+ +A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFV----EYESHRAA 197
Query: 74 NACHNKKTLPGA----SSPLQVKYADGELERLEHK------LFIGMLPKNVSEAEVSALF 123
A +K +PG +QV +AD E E E L++ L + +E + A F
Sbjct: 198 -AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 124 SIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KW 180
+ + G ++ ++ LR AF+ + +E A+AA+ +NGK ++G+S+ + + K
Sbjct: 257 NKFKPGAVERVKKLRDY-------AFVHFFNREDAVAAMSVMNGKC-IDGASIEVTLAKP 308
Query: 181 ADTEKEXXXXXXXXXXXXXNNL---PNADSQHPSLFGALP 217
+ E NL N + HP G LP
Sbjct: 309 VNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKLP 348
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 161 (61.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ M E +L+ +F+ + E ++ + + +RG FV+ +++EA A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGE-NRGYAFVMYTTKEEAQLAIRI 120
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV-SALFSIYGTIKDLQ 133
+N + PG K+ G L++ +LFIG +PK + E+ + + + D+
Sbjct: 121 LNNYEIRPG-------KFI-GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVI 172
Query: 134 ILRGSQQTSK--GCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +K G AF++YE+ + A+A + I G ++ G ++ V WAD EKE
Sbjct: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ--VDWADPEKE 226
Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
Identities = 55/220 (25%), Positives = 99/220 (45%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAV 73
+LF+G +PK + ++L K+ V +V + T + +RG FV E+ +A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFV----EYESHRAA 197
Query: 74 NACHNKKTLPGA----SSPLQVKYADGELERLEHK------LFIGMLPKNVSEAEVSALF 123
A +K +PG +QV +AD E E E L++ L + +E + A F
Sbjct: 198 -AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 124 SIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KW 180
+ + G+++ ++ LR AF+ + +E A+AA+ +NGK ++G+S+ + + K
Sbjct: 257 NKFKPGSVERVKKLRDY-------AFVHFFNREDAVAAMSVMNGKC-IDGASIEVTLAKP 308
Query: 181 ADTEKEXXXXXXXXXXXXXNNL---PNADSQHPSLFGALP 217
+ E NL N + HP + G P
Sbjct: 309 VNKENTWRQHLNGQISPNSENLIVFANKEESHPKILGKPP 348
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 161 (61.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ M E +L+ +F+ + E ++ + + +RG FV+ +++EA A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGE-NRGYAFVMYTTKEEAQLAIRI 120
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV-SALFSIYGTIKDLQ 133
+N + PG K+ G L++ +LFIG +PK + E+ + + + D+
Sbjct: 121 LNNYEIRPG-------KFI-GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVI 172
Query: 134 ILRGSQQTSK--GCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +K G AF++YE+ + A+A + I G ++ G ++ V WAD EKE
Sbjct: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ--VDWADPEKE 226
Score = 115 (45.5 bits), Expect = 0.00088, P = 0.00088
Identities = 55/220 (25%), Positives = 97/220 (44%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAV 73
+LF+G +PK + ++L K+ V +V + T + +RG FV E+ +A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFV----EYESHRAA 197
Query: 74 NACHNKKTLPGA----SSPLQVKYADGELERLEHK------LFIGMLPKNVSEAEVSALF 123
A +K +PG +QV +AD E E E L++ L + +E + A F
Sbjct: 198 -AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 124 SIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KW 180
+ + G ++ ++ LR AF+ + +E A+AA+ +NGK ++G+S+ + + K
Sbjct: 257 NKFKPGAVERVKKLRDY-------AFVHFFNREDAVAAMSVMNGKC-IDGASIEVTLAKP 308
Query: 181 ADTEKEXXXXXXXXXXXXXNNL---PNADSQHPSLFGALP 217
+ E NL N + HP G P
Sbjct: 309 VNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKPP 348
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 161 (61.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ M E +L+ +F+ + E ++ + + +RG FV+ +++EA A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGE-NRGYAFVMYTTKEEAQLAIRI 120
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV-SALFSIYGTIKDLQ 133
+N + PG K+ G L++ +LFIG +PK + E+ + + + D+
Sbjct: 121 LNNYEIRPG-------KFI-GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVI 172
Query: 134 ILRGSQQTSK--GCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +K G AF++YE+ + A+A + I G ++ G ++ V WAD EKE
Sbjct: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ--VDWADPEKE 226
Score = 115 (45.5 bits), Expect = 0.00088, P = 0.00088
Identities = 55/220 (25%), Positives = 97/220 (44%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAV 73
+LF+G +PK + ++L K+ V +V + T + +RG FV E+ +A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFV----EYESHRAA 197
Query: 74 NACHNKKTLPGA----SSPLQVKYADGELERLEHK------LFIGMLPKNVSEAEVSALF 123
A +K +PG +QV +AD E E E L++ L + +E + A F
Sbjct: 198 -AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 124 SIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KW 180
+ + G ++ ++ LR AF+ + +E A+AA+ +NGK ++G+S+ + + K
Sbjct: 257 NKFKPGAVERVKKLRDY-------AFVHFFNREDAVAAMSVMNGKC-IDGASIEVTLAKP 308
Query: 181 ADTEKEXXXXXXXXXXXXXNNL---PNADSQHPSLFGALP 217
+ E NL N + HP G P
Sbjct: 309 VNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKPP 348
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 161 (61.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ M E +L+ +F+ + E ++ + + +RG FV+ +++EA A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGE-NRGYAFVMYTTKEEAQLAIRI 120
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV-SALFSIYGTIKDLQ 133
+N + PG K+ G L++ +LFIG +PK + E+ + + + D+
Sbjct: 121 LNNYEIRPG-------KFI-GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVI 172
Query: 134 ILRGSQQTSK--GCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +K G AF++YE+ + A+A + I G ++ G ++ V WAD EKE
Sbjct: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ--VDWADPEKE 226
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 161 (61.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ M E +L+ +F+ + E ++ + + +RG FV+ +++EA A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGE-NRGYAFVMYTTKEEAQLAIRI 120
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV-SALFSIYGTIKDLQ 133
+N + PG K+ G L++ +LFIG +PK + E+ + + + D+
Sbjct: 121 LNNYEIRPG-------KFI-GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVI 172
Query: 134 ILRGSQQTSK--GCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +K G AF++YE+ + A+A + I G ++ G ++ V WAD EKE
Sbjct: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ--VDWADPEKE 226
>UNIPROTKB|B4QRJ0 [details] [associations]
symbol:shep "Protein alan shepard" species:7240 "Drosophila
simulans" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CM000363 OrthoDB:EOG4C8687 RefSeq:XP_002083716.1
ProteinModelPortal:B4QRJ0 EnsemblMetazoa:FBtr0213117 GeneID:6736860
KEGG:dsi:Dsim_GD13207 FlyBase:FBgn0184928 Uniprot:B4QRJ0
Length = 576
Score = 158 (60.7 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 49/169 (28%), Positives = 82/169 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + + T+ L+ M ++ + I DKTT G FV A+ AV
Sbjct: 230 KTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCYG--FVDFEQPAFAECAV 287
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
K L G +Q + A + E+ L+I LP + E ++ A+ S YG + +
Sbjct: 288 ------KGLQGKG--VQAQMAKQQ-EQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTR 338
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
ILR Q SKG F + E++E+ ++ NG + + G+ PL+VK+AD
Sbjct: 339 ILRDQQMNSKGVGFARMESREKCEQIIQMFNG-NTIPGAKDPLLVKFAD 386
Score = 126 (49.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++ +P H E L AM ++ V I++D+ S+G F SR++ ++ +
Sbjct: 310 LYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQM- 367
Query: 77 HNKKTLPGASSPLQVKYADG 96
N T+PGA PL VK+ADG
Sbjct: 368 FNGNTIPGAKDPLLVKFADG 387
Score = 44 (20.5 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 24/110 (21%), Positives = 43/110 (39%)
Query: 220 YAPPYNGYGYQASGSYGLMQYRLPP-MQNQPGFHGIIPPVNQGNAMRGAS--PDLSSNMG 276
++ P G GY +GS + Y + + +Q + + + S P+ + +
Sbjct: 441 FSAPQVG-GYPVAGSQWIPGYMMTTQVDDQTSYSPQYMQMAAAPQLGVTSYKPEAVNQVQ 499
Query: 277 PRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHR-PLNNSPGSVSPAV 325
PR +M SG G Y + Q G + HR P P ++ P +
Sbjct: 500 PRGISMMVSGDTGVPYGTMMP-QLATLQIGNSVSHRSPYYAPPPTIIPTM 548
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 147 (56.8 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAANKAIEKMNG 160
Score = 131 (51.2 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 40/164 (24%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A+KA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAANKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++R SKG F+ YE E A A+E +NGK +M G S+
Sbjct: 219 SVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSI 261
Score = 107 (42.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 44/187 (23%), Positives = 88/187 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+++ + + + L +F +F V +++D + + S+G FV ++A+KAV
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK-SKGFGFVSYEKHEDANKAVEEM 251
Query: 77 HNKKTLPGAS-------------SPLQVKYADGELERLEH----KLFIGMLPKNVSEAEV 119
N K + G S + L+ K+ + ER+ L+I L + + ++
Sbjct: 252 -NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 120 SALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179
FS +G+I +++ + SKG F+ + + E+A A+ +NG+ + GS PL V
Sbjct: 311 RKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGR--IVGSK-PLYVA 366
Query: 180 WADTEKE 186
A ++E
Sbjct: 367 LAQRKEE 373
Score = 56 (24.8 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 32/118 (27%), Positives = 49/118 (41%)
Query: 214 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSS 273
G P G+ + + SG +++ L P N P G+ P Q + A P+L+
Sbjct: 440 GGRPQGFQGMPSAL--RQSGPRPALRH-LAPTGNAPASRGL-PTTAQRVGVPTAVPNLAP 495
Query: 274 NM-----GPRNYAMPPSGF---VGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
PR A+ P + V S +PA+ LQ P P + G PL S + +P
Sbjct: 496 RATVAAAAPR--AVAPYKYASNVRSPHPAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 550
>UNIPROTKB|E2RMT9 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:AAEX03017702 EMBL:AAEX03017703 Ensembl:ENSCAFT00000015788
NextBio:20854045 Uniprot:E2RMT9
Length = 420
Score = 157 (60.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 76/311 (24%), Positives = 129/311 (41%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 62 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 121
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 122 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 172
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWADTEKEXX 188
ILR S TS+G F + E+ E+ A + NGK K G S P L+ K+AD ++
Sbjct: 173 ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR 232
Query: 189 XXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPP----YNGY---GYQASGSYGLMQYR 241
+PN H + + Y P NG+ Y + + + Q
Sbjct: 233 QNPNKY-------IPNGRPWHREGEAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTS 285
Query: 242 LPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSN--MGPRNYAMPPSGFVGSGYPAVPGLQ 299
L P P + + N RG++ + S M P+ Y + G V P ++
Sbjct: 286 LTPYIASPVSAYQVAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAV-----LTPSME 340
Query: 300 YPMPY-PGGML 309
+ M P M+
Sbjct: 341 HTMSLQPASMI 351
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 159 (61.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 44/171 (25%), Positives = 93/171 (54%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D T +RG FV +++ A +AV
Sbjct: 162 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 221
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
+N + G + + A+ ++LF+G +PK+ ++ ++ FS + + D+ +
Sbjct: 222 YNNHEIRSGKHIGVCISVAN-------NRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 274
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWAD 182
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD
Sbjct: 275 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVV--TVEWAD 323
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 76/303 (25%), Positives = 121/303 (39%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+LFVG +PK T+ Q++ F + L D + + + +RG CF+ + A +A
Sbjct: 243 RLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 302
Query: 74 NACHNKKTLPGASSPLQVKYADG------ELERLEHKLFIGMLPKNVSEAEVSALFSIYG 127
+ K + + V++AD E+ LF+ L V+E + FS +G
Sbjct: 303 RRLMSGKVKVWGNV-VTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 361
Query: 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV-VKWADTE-K 185
++ ++ L K AF+ ++ ++ A+ A+E +NGK +EG ++ +V K D + K
Sbjct: 362 KLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKD-LEGENIEIVFAKPPDQKRK 413
Query: 186 EXXXXXXXXXXXXXNNLPNADSQH---PSLF----GALPMGYAPPYNGY-GYQASGSYGL 237
E ++ H P+ G GY P Y GY Y Y
Sbjct: 414 ERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDY 473
Query: 238 MQYR---LPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPA 294
YR P F + G RGA+P S G A PP G G
Sbjct: 474 HNYRGGYEDPYYGYEDFQ-VGARGRGGRGARGAAP--SRGRG----AAPPRGRAGYAQRG 526
Query: 295 VPG 297
PG
Sbjct: 527 GPG 529
>UNIPROTKB|Q3ZBP3 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:BC103186 IPI:IPI00696485
RefSeq:NP_001030438.1 UniGene:Bt.44980 UniGene:Bt.91245 HSSP:P29558
ProteinModelPortal:Q3ZBP3 SMR:Q3ZBP3 PRIDE:Q3ZBP3
Ensembl:ENSBTAT00000006826 GeneID:526135 KEGG:bta:526135 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
InParanoid:Q3ZBP3 OMA:THVQTAA OrthoDB:EOG469QV2 NextBio:20874311
Uniprot:Q3ZBP3
Length = 403
Score = 156 (60.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 51/174 (29%), Positives = 84/174 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 61 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 121 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 171
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWAD 182
ILR S TS+G F + E+ E+ A + NGK K G S P L+ K+AD
Sbjct: 172 ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD 225
>UNIPROTKB|E2RM13 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:AAEX03017702
EMBL:AAEX03017703 Ensembl:ENSCAFT00000015804 Uniprot:E2RM13
Length = 404
Score = 156 (60.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 51/174 (29%), Positives = 84/174 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 59 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 118
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 119 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 169
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWAD 182
ILR S TS+G F + E+ E+ A + NGK K G S P L+ K+AD
Sbjct: 170 ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD 223
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 88/356 (24%), Positives = 142/356 (39%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++V + + T+ +L F ++ + +++D + SR FV + ++A +AV A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAARAVEAL 285
Query: 77 HNKKT-----LPGASSP-------LQVKYADGELE---RLEH-KLFIGMLPKNVSEAEVS 120
+ KK G + L +Y G + + + L++ L V++ ++
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
LF+ +GTI +++R TSKG F+ + +A L +NGK M G PL V
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK--MVGGK-PLYVAL 402
Query: 181 ADTEKEXXXXXXXXXXXXXNN-LPNADSQHPSLFGALP-------MGYAPP-----YNGY 227
A ++E +P + P G P G PP G+
Sbjct: 403 AQRKEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGF 462
Query: 228 GYQASGSYGLMQ-YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMP--- 283
GYQ G+ + PM QPG G P G G P + P Y P
Sbjct: 463 GYQPQLVPGMRPAFFGGPMM-QPGQQGPRP----GGRRSGDGPMRHQHQQPMPYMQPQMM 517
Query: 284 PSGFVGSGYPAVPGLQYPM-PYPGGM------LGHRPLNN--SPGSVSPAVANSNP 330
P G G YP+ G P P PGGM + P + S G ++ ++AN+ P
Sbjct: 518 PRGR-GYRYPS-GGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLATSLANATP 571
Score = 153 (58.9 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 43/151 (28%), Positives = 71/151 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + ++T++QL F E V V + +D T S G +V + +A+KA+
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N L G + D R LF+ L K+V + FS GTI ++
Sbjct: 108 -NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGK 166
S+G F++++T++ A A+E +NGK
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGK 197
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 156 (60.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 49/182 (26%), Positives = 92/182 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+FVG + K ++ L + F +F V E +I+D T+ S+G FV P++Q A+ A+
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 77 HNKKTLPGA--SSPLQVKYADGELERLEHK------------LFIGMLPKNVSEAEVSAL 122
+ K A ++ K ++ ++L + +++G + + ++A++ L
Sbjct: 287 NGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDL 346
Query: 123 FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
FS YG I +++I + + AF++YE KE A A+ +NGK +M G+ V W
Sbjct: 347 FSTYGDIAEVRIFKTQRY-----AFVRYEKKECATKAIMEMNGK-EMAGNQVRC--SWGR 398
Query: 183 TE 184
T+
Sbjct: 399 TQ 400
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 156 (60.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 43/162 (26%), Positives = 84/162 (51%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++G++ +TEA + ++ +V +I+++ T + G CFV S EA A+
Sbjct: 92 KTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM 151
Query: 74 NACHNKKTLPGASSPLQVKYADG------ELERL-EHKLFIGMLPKNVSEAEVSALF-SI 125
+ N K +PG + ++ +A G + + E+ +F+G L NV+E +V +LF S
Sbjct: 152 SM--NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209
Query: 126 YGTIKDLQILRGSQ-QTSKGCAFLKYETKEQALAALEAINGK 166
Y + K +I+ Q S+G F+++ + +AL + G+
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQ 251
>MGI|MGI:2387367 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2387367 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD EMBL:AB036992 EMBL:AY152391
EMBL:AK089975 EMBL:BC057890 IPI:IPI00221908 RefSeq:NP_700454.1
UniGene:Mm.33310 ProteinModelPortal:Q8BHN5 SMR:Q8BHN5 STRING:Q8BHN5
PhosphoSite:Q8BHN5 PaxDb:Q8BHN5 PRIDE:Q8BHN5
Ensembl:ENSMUST00000046389 GeneID:241490 KEGG:mmu:241490
GeneTree:ENSGT00680000100059 InParanoid:Q8BHN5 OrthoDB:EOG43R3MJ
NextBio:385019 Bgee:Q8BHN5 CleanEx:MM_RBM45 Genevestigator:Q8BHN5
GermOnline:ENSMUSG00000042369 Uniprot:Q8BHN5
Length = 476
Score = 156 (60.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 41/150 (27%), Positives = 75/150 (50%)
Query: 22 VPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81
+ KH +E L F F + ++ +++DK T+ S+G FV +A +A+ H +
Sbjct: 32 ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCL 91
Query: 82 LPGASSPLQV---------KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
P + P++V + D E E L ++F+ M+PK+ +E ++ F +YG I+
Sbjct: 92 GPSDTKPIKVFIAQSRSSGSHRDVEDEELT-RIFV-MIPKSYTEEDLREKFKVYGDIEYC 149
Query: 133 QILRGSQQ-TSKGCAFLKYETKEQALAALE 161
I++ SKG +++Y QA A+E
Sbjct: 150 SIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 146 (56.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 127 (49.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 105 (42.0 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 42/186 (22%), Positives = 88/186 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+++ + + + L +F +F V +++D + + S+G FV ++A+KAV
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHEDANKAVEEM 251
Query: 77 HNKKT-----LPGAS-------SPLQVKYADGELERLEH----KLFIGMLPKNVSEAEVS 120
+ K+ G + + L+ K+ + ER+ L+I L + + ++
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
FS +G+I +++ + SKG F+ + + E+A A+ +NG+ + GS PL V
Sbjct: 312 KEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGR--IVGSK-PLYVAL 367
Query: 181 ADTEKE 186
A ++E
Sbjct: 368 AQRKEE 373
Score = 54 (24.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 31/116 (26%), Positives = 49/116 (42%)
Query: 214 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ--G--NAMRGASP 269
G P G+ + + SG +++ L P N P G+ P Q G A++ +P
Sbjct: 440 GGRPQGFQGMPSAI--RQSGPRPALRH-LAPTGNAPASRGL-PTTAQRVGVPTAVQNLAP 495
Query: 270 DLS-SNMGPRNYA-MPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
+ + PR A + V S +PA+ LQ P P + G PL S + +P
Sbjct: 496 RAAVATAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 550
>UNIPROTKB|B3M3R5 [details] [associations]
symbol:shep "Protein alan shepard" species:7217 "Drosophila
ananassae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH902618 eggNOG:NOG320163 RefSeq:XP_001957552.1
ProteinModelPortal:B3M3R5 GeneID:6493340 KEGG:dan:Dana_GF10470
FlyBase:FBgn0087511 InParanoid:B3M3R5 OrthoDB:EOG4C8687
Uniprot:B3M3R5
Length = 597
Score = 157 (60.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + + T+ L+ M ++ + I DKTT G FV A+ AV
Sbjct: 235 KTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCYG--FVDFEQPAFAECAV 292
Query: 74 NACHNKKTLPG-ASSPLQVKYADG-ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131
K A + V + + E+ L+I LP + E ++ A+ S YG +
Sbjct: 293 KGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHYKETDLEAMLSKYGQVVS 352
Query: 132 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
+ILR Q SKG F + E++E+ ++ NG + + G PL+VK+AD
Sbjct: 353 TRILRDQQMNSKGVGFARMESREKCEQIIQMFNG-NTIPGGKDPLLVKFAD 402
Score = 121 (47.7 bits), Expect = 0.00022, P = 0.00022
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++ +P H E L AM ++ V I++D+ S+G F SR++ ++ +
Sbjct: 326 LYIANLPPHYKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQM- 383
Query: 77 HNKKTLPGASSPLQVKYADG 96
N T+PG PL VK+ADG
Sbjct: 384 FNGNTIPGGKDPLLVKFADG 403
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 159 (61.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 40/150 (26%), Positives = 72/150 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA L +F V + + +D TR S G +V + +A++A++
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + L + D L + +F+ L K++ + FS++G I ++
Sbjct: 78 -NYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVA 136
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
SK F+ YE +E A A+E +NG
Sbjct: 137 TDEFGKSKSYGFVHYEDEESAKEAIEKVNG 166
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 159 (61.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 40/150 (26%), Positives = 72/150 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA L +F V + + +D TR S G +V + +A++A++
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + L + D L + +F+ L K++ + FS++G I ++
Sbjct: 78 -NYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVA 136
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
SK F+ YE +E A A+E +NG
Sbjct: 137 TDEFGKSKSYGFVHYEDEESAKEAIEKVNG 166
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 157 (60.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + ++T++QL F + V V + +D TR S G +V + Q+A +A+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 77 HNKKTLPGASSPLQVKYA--DGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+ +P P++V Y+ D + R +FI L +++ + FS +G I +
Sbjct: 98 NY---IPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK 154
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
+ S SKG F++Y +E A A+E +NG
Sbjct: 155 VAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186
Score = 145 (56.1 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 75/346 (21%), Positives = 139/346 (40%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++V + + T+ L F E+ + ++KD + S+G FV + +A +AV +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESL 275
Query: 77 H-----NKKTLPGAS-------SPLQVKYADGELERLEH----KLFIGMLPKNVSEAEVS 120
+ +K+ G + + L+V+Y E + L++ L ++S+ ++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
+FS +GT+ +++R TSKG F+ + T E+A A+ ++GK +E + + +
Sbjct: 336 EIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGK-MIESKPLYVAIAQ 394
Query: 181 ADTEKEXXXXXXXXXXXXXNNLPNADSQHP------------SLFGALPMGYAPPYNGYG 228
++ P+ + P +G P PP GYG
Sbjct: 395 RKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYG 454
Query: 229 YQASGSYGLMQYRLPPMQNQPGFH-GIIPPVNQ--GNAMRGASPDLSSNMGPR-NYAMPP 284
YQ G+ P P F ++ P Q G R S P M P
Sbjct: 455 YQQQLVPGMR----PGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHP 510
Query: 285 SGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330
G + YP G +P P M + PL + G+++ ++N+ P
Sbjct: 511 RGRMFR-YPQGRGGSGDVP-PYDMGNNMPL--TIGALASNLSNATP 552
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 156 (60.0 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 39/150 (26%), Positives = 72/150 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + ++E L +F + LV + + +D TR S +V + +A++A++
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
+N + G + + D L + +FI L K + + FS +G I +++
Sbjct: 72 NNTP-IRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVV 130
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+SKG F+ YET+E A A+ +NG
Sbjct: 131 TDDGNSSKGFGFVHYETQESADKAIAKVNG 160
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 155 (59.6 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 70/254 (27%), Positives = 108/254 (42%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + E +L F F V E I+KD+TT +RG FV+ A+ +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 76 CHN--------KKTLP-------GASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVS 120
HN KK +P S+ ++ + G R K+F+G LP +V+E++
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTR-KIFVGGLPSSVTESDFK 125
Query: 121 ALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179
F +GT D+ ++ + Q +G F+ Y+++E L + H++ G V VK
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL--LKTFHELNGKMVE--VK 181
Query: 180 WADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGL-M 238
A KE + L S + L GYA G+ A G YGL M
Sbjct: 182 RA-VPKELSPGPSR------SPLGAGYSYGVNRVNNLLNGYA---QGFNPAAVGGYGLRM 231
Query: 239 QYRLPPM-QNQPGF 251
R P+ + GF
Sbjct: 232 DGRFSPVGAGRSGF 245
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 138 (53.6 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 58/227 (25%), Positives = 99/227 (43%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + T+ L F+++ + + +++++ + SR FV S EAD A++A
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 76 CHNKKTLPGASSPLQ--VKYAD-GELERLEH--KLFIGMLPKNVSEAEVSALFSIYGTIK 130
L G + L+ V D G+ E L K+FIG L ++ E + FS +G ++
Sbjct: 71 --RPHILDGNNVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVE 128
Query: 131 DLQILRGSQQTSK-GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXX 189
+++ + K G F+ +E + A A+ + H + G V VK A T++E
Sbjct: 129 KAEVITDKETGKKRGFGFVYFEDNDSADKAV--VLKFHMINGHKVE--VKKALTKQEMQA 184
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYG 236
+ + +G GY Y G GY + YG
Sbjct: 185 AGSRGGGRGGRGGGRGMGRPQNGYGGRGGGYGN-YGGGGYGGNDGYG 230
Score = 50 (22.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 219 GYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHG 253
GY +GYG Q+SG YG M+ N P G
Sbjct: 257 GYNDFGSGYGQQSSG-YGPMKGNYSGRSNAPYSRG 290
>UNIPROTKB|F1SLB3 [details] [associations]
symbol:RBMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CU633731
EMBL:CU655980 Ensembl:ENSSSCT00000000434 OMA:GHQMAPP
ArrayExpress:F1SLB3 Uniprot:F1SLB3
Length = 281
Score = 149 (57.5 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 48/174 (27%), Positives = 82/174 (47%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 25 KTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 84
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 85 TALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTR 135
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-K----MEGSSVPLVVKWAD 182
ILR + TS+G F + E+ E+ A + NGK+ K + S PL+ K+AD
Sbjct: 136 ILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFAD 189
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 150 (57.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 38/150 (25%), Positives = 70/150 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++G + ++EA L F V + + +D T+R S G +V +A++A++
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 77 HNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + + G + D R + +FI L + + V FS++G I ++
Sbjct: 119 -NFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVA 177
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+ +ET+ A A+E +NG
Sbjct: 178 TDDEGNSKGYGFVHFETEHSAQTAIEKVNG 207
Score = 119 (46.9 bits), Expect = 0.00045, P = 0.00045
Identities = 68/250 (27%), Positives = 98/250 (39%)
Query: 70 DKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSE-AEVSAL---FSI 125
D ++ C +K S+ L+ KY + ER++ + + KN+ E L FS
Sbjct: 307 DCKLSVCRAQKKSE-RSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSS 365
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185
+GTI +++ SKG F+ +E E+A AA+ +N K M G+ PL V A ++
Sbjct: 366 FGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSK--MIGAK-PLYVALAQRKE 422
Query: 186 EXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY----GYQASGSYGLM--- 238
+ L Q S A+ Y P GY A G G
Sbjct: 423 DRRAQLASQYMQRLATLRMG--QQASGVPAMTQLYQPGQQGYFVPNPMNAQGRPGFQPQS 480
Query: 239 -QYRLPP----MQNQPGFHGIIPPVNQGNA--MRGASPDLSSNMGPRNYAMPPSGFVGSG 291
Q R PP QNQ P NQ + P + +N G Y M P +G
Sbjct: 481 AQIRGPPGQRVFQNQMFMQY---PFNQRQVYPQQQGRPPMRTNDGRPQYGMAPRP---AG 534
Query: 292 YPAV--PGLQ 299
P V PG+Q
Sbjct: 535 APRVGGPGVQ 544
Score = 48 (22.0 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 210 PSLFG-ALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 268
P + G + MG AP G G+ Y+ PP Q QP H P G +G S
Sbjct: 536 PRVGGPGVQMGGAP-IRQQGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQS 594
>UNIPROTKB|F1RZE1 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:CU856244 Ensembl:ENSSSCT00000017417 Uniprot:F1RZE1
Length = 476
Score = 153 (58.9 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 40/150 (26%), Positives = 75/150 (50%)
Query: 22 VPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81
+ K+ E+ L F F + ++ +++DK T+ S+G FV +A +A+ H +
Sbjct: 32 ISKYTPESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
Query: 82 LPGASSPLQV---------KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
P + P++V + D E E L ++F+ M+PK+ +E ++ F +YG I+
Sbjct: 92 SPNDTKPIKVFIAQSRSSGSHRDVEDEELT-RIFV-MIPKSYTEEDLREKFKVYGDIEYC 149
Query: 133 QILRGSQQ-TSKGCAFLKYETKEQALAALE 161
I++ SKG +++Y QA A+E
Sbjct: 150 SIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 147 (56.8 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 45/167 (26%), Positives = 85/167 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KL+ G +P ++ A L + ++FA + V ++ ++ T SRG FV + ++ + ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 76 CHNKKTLPGASSPLQVKYADG---ELERL----EHKLFIGMLPKNVSEAEVSALFSIYGT 128
+ L A L+V +AD E L EHKLF+G L V+ ++ F G
Sbjct: 146 LDGTEYLGRA---LKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGD 202
Query: 129 IKDLQIL-RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
+ +++ G S+G F+ Y +K + ALE+++G ++EG ++
Sbjct: 203 VVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDG-FELEGRAI 248
>UNIPROTKB|F1PYP3 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 EMBL:AAEX03017810
Ensembl:ENSCAFT00000021639 Uniprot:F1PYP3
Length = 480
Score = 153 (58.9 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 40/150 (26%), Positives = 75/150 (50%)
Query: 22 VPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81
+ K+ E+ L F F + ++ +++DK T+ S+G FV +A +A+ H +
Sbjct: 32 ISKYTPESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
Query: 82 LPGASSPLQV---------KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
P + P++V + D E E L ++F+ M+PK+ +E ++ F +YG I+
Sbjct: 92 SPNDTKPIKVFIAQSRSSGSHRDVEDEELT-RIFV-MIPKSYTEEDLREKFKVYGDIEYC 149
Query: 133 QILRGSQQ-TSKGCAFLKYETKEQALAALE 161
I++ SKG +++Y QA A+E
Sbjct: 150 SIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
>UNIPROTKB|F5H4Y5 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI01015313 ProteinModelPortal:F5H4Y5 SMR:F5H4Y5
Ensembl:ENST00000543178 ArrayExpress:F5H4Y5 Bgee:F5H4Y5
Uniprot:F5H4Y5
Length = 79
Score = 131 (51.2 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 25/63 (39%), Positives = 43/63 (68%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNA 75
NA
Sbjct: 76 QNA 78
Score = 118 (46.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAAL 160
K+F+G +P+ SE ++ LF YG + ++ +LR Q SKGC F+ + T++ AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 161 EAI 163
A+
Sbjct: 77 NAL 79
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 142 (55.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET++ A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQDAADRAIEKMNG 160
Score = 111 (44.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 35/156 (22%), Positives = 69/156 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV ++ AD+A+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQDAADRAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I ++ + + LFS YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++ SKG F+ +E E A A+E +NGK
Sbjct: 219 SVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGK 254
Score = 55 (24.4 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 31/116 (26%), Positives = 45/116 (38%)
Query: 214 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSS 273
G P G+ N + SG +++ L P P G+ P Q + A L+
Sbjct: 440 GGRPQGFQGMPNAM--RQSGPRPALRH-LAPAGTAPASRGL-PVSAQRVGVTTAGQSLAP 495
Query: 274 N---MGPRNYAMPPSGF---VGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
P A+PP + V S +P V LQ P P + G PL S + +P
Sbjct: 496 RPPVAAPAPRAVPPYKYASSVRSPHPPVQPLQAPQPAVH-VQGQEPLTASMLAAAP 550
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 151 (58.2 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 92/346 (26%), Positives = 133/346 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFV----------ICPS 65
KLFVG + T+ L + F ++ V + I+KDKTT SRG FV + S
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 66 RQEADKAVNACHNKKTLPGASSPLQVKYADGELE--RLEH----KLFIGMLPKNVSEAEV 119
R N K P P + + +G + R ++ K+F+G +P N E E+
Sbjct: 61 RPHTLDGRNI-DPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 119
Query: 120 SALFSIYGTIKDL-QILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLV 177
F +G + ++ I +Q +G F+ +E EQ++ +A+N H + G V
Sbjct: 120 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVD--QAVNMHFHDIMGKKVE-- 174
Query: 178 VKWADTE--KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGY-----Q 230
VK A+ K +PNA + G P + Y G Q
Sbjct: 175 VKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN---GWAGQPPPTWQQGYGPQGMWVPAGQ 231
Query: 231 ASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPD--LSSNMG-PRNYAMPPSGF 287
A G YG PP P G PP + ++P G P+ Y PP
Sbjct: 232 AIGGYG------PP----PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFS 281
Query: 288 VGSGYPAVPGLQY--P-MPYPGGMLGHRPLNNSPGSVSPAVANSNP 330
G G P P Q+ P +P P G PL P A S P
Sbjct: 282 FGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKP 327
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 151 (58.2 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 92/346 (26%), Positives = 133/346 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFV----------ICPS 65
KLFVG + T+ L + F ++ V + I+KDKTT SRG FV + S
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 66 RQEADKAVNACHNKKTLPGASSPLQVKYADGELE--RLEH----KLFIGMLPKNVSEAEV 119
R N K P P + + +G + R ++ K+F+G +P N E E+
Sbjct: 71 RPHTLDGRNI-DPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 120 SALFSIYGTIKDL-QILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLV 177
F +G + ++ I +Q +G F+ +E EQ++ +A+N H + G V
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVD--QAVNMHFHDIMGKKVE-- 184
Query: 178 VKWADTE--KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGY-----Q 230
VK A+ K +PNA + G P + Y G Q
Sbjct: 185 VKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN---GWAGQPPPTWQQGYGPQGMWVPAGQ 241
Query: 231 ASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPD--LSSNMG-PRNYAMPPSGF 287
A G YG PP P G PP + ++P G P+ Y PP
Sbjct: 242 AIGGYG------PP----PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFS 291
Query: 288 VGSGYPAVPGLQY--P-MPYPGGMLGHRPLNNSPGSVSPAVANSNP 330
G G P P Q+ P +P P G PL P A S P
Sbjct: 292 FGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKP 337
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 151 (58.2 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 92/346 (26%), Positives = 133/346 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFV----------ICPS 65
KLFVG + T+ L + F ++ V + I+KDKTT SRG FV + S
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 66 RQEADKAVNACHNKKTLPGASSPLQVKYADGELE--RLEH----KLFIGMLPKNVSEAEV 119
R N K P P + + +G + R ++ K+F+G +P N E E+
Sbjct: 71 RPHTLDGRNI-DPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 120 SALFSIYGTIKDL-QILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLV 177
F +G + ++ I +Q +G F+ +E EQ++ +A+N H + G V
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVD--QAVNMHFHDIMGKKVE-- 184
Query: 178 VKWADTE--KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGY-----Q 230
VK A+ K +PNA + G P + Y G Q
Sbjct: 185 VKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN---GWAGQPPPTWQQGYGPQGMWVPAGQ 241
Query: 231 ASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPD--LSSNMG-PRNYAMPPSGF 287
A G YG PP P G PP + ++P G P+ Y PP
Sbjct: 242 AIGGYG------PP----PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFS 291
Query: 288 VGSGYPAVPGLQY--P-MPYPGGMLGHRPLNNSPGSVSPAVANSNP 330
G G P P Q+ P +P P G PL P A S P
Sbjct: 292 FGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKP 337
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 151 (58.2 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 92/346 (26%), Positives = 133/346 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFV----------ICPS 65
KLFVG + T+ L + F ++ V + I+KDKTT SRG FV + S
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 66 RQEADKAVNACHNKKTLPGASSPLQVKYADGELE--RLEH----KLFIGMLPKNVSEAEV 119
R N K P P + + +G + R ++ K+F+G +P N E E+
Sbjct: 71 RPHTLDGRNI-DPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 120 SALFSIYGTIKDL-QILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLV 177
F +G + ++ I +Q +G F+ +E EQ++ +A+N H + G V
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVD--QAVNMHFHDIMGKKVE-- 184
Query: 178 VKWADTE--KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGY-----Q 230
VK A+ K +PNA + G P + Y G Q
Sbjct: 185 VKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN---GWAGQPPPTWQQGYGPQGMWVPAGQ 241
Query: 231 ASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPD--LSSNMG-PRNYAMPPSGF 287
A G YG PP P G PP + ++P G P+ Y PP
Sbjct: 242 AIGGYG------PP----PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFS 291
Query: 288 VGSGYPAVPGLQY--P-MPYPGGMLGHRPLNNSPGSVSPAVANSNP 330
G G P P Q+ P +P P G PL P A S P
Sbjct: 292 FGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKP 337
>UNIPROTKB|Q3MHF0 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD GeneTree:ENSGT00680000100059
OrthoDB:EOG43R3MJ EMBL:DAAA02004143 EMBL:BC105262 IPI:IPI00711970
RefSeq:NP_001124225.1 UniGene:Bt.48322 STRING:Q3MHF0
Ensembl:ENSBTAT00000008111 GeneID:535331 KEGG:bta:535331
InParanoid:Q3MHF0 NextBio:20876704 Uniprot:Q3MHF0
Length = 474
Score = 152 (58.6 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 39/150 (26%), Positives = 76/150 (50%)
Query: 22 VPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81
+ K+ +E+ L F F + ++ +++DK T+ S+G FV +A +A+ H +
Sbjct: 32 ISKYTSESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
Query: 82 LPGASSPLQV---------KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
P + P++V + D E E L ++F+ M+PK+ +E ++ F ++G I+
Sbjct: 92 TPSDTKPIKVFIAQSRSSGSHRDVEDEELT-RIFV-MIPKSYTEEDLREKFKVFGDIEYC 149
Query: 133 QILRGSQQ-TSKGCAFLKYETKEQALAALE 161
I++ SKG +++Y QA A+E
Sbjct: 150 SIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 146 (56.5 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 127 (49.8 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 50 (22.7 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 31/116 (26%), Positives = 49/116 (42%)
Query: 214 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ--G--NAMRGASP 269
G P G+ + + SG +++ L P N P G+ P Q G A++ +P
Sbjct: 440 GGRPQGFQGMPSAI--RQSGPRPALRH-LAPTGNAPASRGL-PTTAQRVGVPTAVQTLAP 495
Query: 270 DLS-SNMGPRNYA-MPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
+ + PR A + V S +PA+ LQ P P + G PL S + +P
Sbjct: 496 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 550
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R K+ Q ++ T++ L F+++ +D I+ K + S G FV ++A+KA+
Sbjct: 82 RDKITGNQFREYFTDSSL---FEKWRPLDSEVIVLGKGWQ-SLGYGFVNYIDPKDAEKAI 137
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 138 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 194
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 195 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 248
Score = 129 (50.5 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 167 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 227 NGQKP-PGATEPITVKFANNPSQK 249
Score = 63 (27.2 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 164 NG 165
NG
Sbjct: 379 NG 380
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 146 (56.5 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 127 (49.8 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 50 (22.7 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 22/72 (30%), Positives = 30/72 (41%)
Query: 253 GIIPPVNQGNAMRGASPDLSSN-MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGH 311
G +P Q A R A + + P YA V S +PA+ LQ P P + G
Sbjct: 497 GGVPTAVQNLAPRAAVAAAAPRAVAPYKYASS----VRSPHPAIQPLQAPQPAVH-VQGQ 551
Query: 312 RPLNNSPGSVSP 323
PL S + +P
Sbjct: 552 EPLTASMLAAAP 563
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 149 (57.5 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 71/301 (23%), Positives = 120/301 (39%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+++G + + +T++ L + + V ++I +D+ + G F C E D AC
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNG--FGFCEFLHEQDVEY-AC 69
Query: 77 HNKKTLPGASSPLQVKYAD---GELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDL 132
+ P++V A G + LF+G L V E + FS G +K
Sbjct: 70 QILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAP 129
Query: 133 QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXX 192
Q+ R SKG F+ Y++ E A AA+EA+N + M + P+ V +A +
Sbjct: 130 QVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLM---NKPITVSYAFKREGKGERHG 186
Query: 193 XXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP--G 250
+ + LP G++P A+ + +PP+ N P G
Sbjct: 187 DIAERKLAAAAKKNKVAVTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVG 246
Query: 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMP----PSGFVGSGY--PAVPGLQYPMPY 304
+PP++ N + P ++ P AMP P G G+ P PG+ P
Sbjct: 247 ATTAVPPLSIPNVL----PFTAAQHFPGMPAMPMMNVPMGPGGAPLVPPPPPGMVMASPS 302
Query: 305 P 305
P
Sbjct: 303 P 303
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 147 (56.8 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 47/176 (26%), Positives = 90/176 (51%)
Query: 16 KLFVGQVPKHMTEAQLLAM-FKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
KLFVG +P + ++Q LAM F++ V+ +I ++ T SRG FV + +EA+KAV
Sbjct: 114 KLFVGNLP-YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 75 ACHN----------KKTLPGASSP-LQVKYADGELERLEHKLFIGMLPKNVSEAEVSALF 123
++ + P S P Q + D ++++G LP +V + LF
Sbjct: 173 KFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF-----RIYVGNLPWDVDSGRLERLF 227
Query: 124 SIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178
S +G + D +++ + S+G F++ + + A+ A++G++ +EG ++ + V
Sbjct: 228 SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQN-LEGRAIKVNV 282
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 152 (58.6 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 43/171 (25%), Positives = 92/171 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D T +RG FV +++ A +AV
Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
+N + G + + A+ ++LF+G +PK+ ++ ++ FS + + D+ +
Sbjct: 133 YNNHEIRSGKHIGVCISVAN-------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 185
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWAD 182
++ ++G FL+YE K A A ++GK K+ G+ V+WAD
Sbjct: 186 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG--TVEWAD 234
Score = 136 (52.9 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 76/302 (25%), Positives = 121/302 (40%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+LFVG +PK T+ Q+L F + L D + + + +RG CF+ + A +A
Sbjct: 154 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 213
Query: 74 NACHNKKT-LPGASSPLQ----VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 128
+ K + G ++ ++ D E+ LF+ L V+E + FS +G
Sbjct: 214 RRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGK 273
Query: 129 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV-VKWADTE-KE 186
++ ++ L K AF+ ++ ++ A+ A+E +NGK +EG ++ +V K D + KE
Sbjct: 274 LERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKD-LEGENIEIVFAKPPDQKRKE 325
Query: 187 XXXXXXXXXXXXXNNLPNADSQH---PSLF----GALPMGYAPPYNGY-GYQASGSYGLM 238
++ H P+ G GY P Y GY Y Y
Sbjct: 326 RKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYH 385
Query: 239 QYR---LPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV 295
YR P F + G RGA+P S G A PP G G
Sbjct: 386 NYRGGYEDPYYGYEDFQ-VGARGRGGRGARGAAP--SRGRG----AAPPRGRAGYSQRGG 438
Query: 296 PG 297
PG
Sbjct: 439 PG 440
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 152 (58.6 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 43/171 (25%), Positives = 92/171 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D T +RG FV +++ A +AV
Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
+N + G + + A+ ++LF+G +PK+ ++ ++ FS + + D+ +
Sbjct: 133 YNNHEIRSGKHIGVCISVAN-------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 185
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWAD 182
++ ++G FL+YE K A A ++GK K+ G+ V+WAD
Sbjct: 186 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG--TVEWAD 234
Score = 136 (52.9 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 76/302 (25%), Positives = 121/302 (40%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+LFVG +PK T+ Q+L F + L D + + + +RG CF+ + A +A
Sbjct: 154 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 213
Query: 74 NACHNKKT-LPGASSPLQ----VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 128
+ K + G ++ ++ D E+ LF+ L V+E + FS +G
Sbjct: 214 RRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGK 273
Query: 129 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV-VKWADTE-KE 186
++ ++ L K AF+ ++ ++ A+ A+E +NGK +EG ++ +V K D + KE
Sbjct: 274 LERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKD-LEGENIEIVFAKPPDQKRKE 325
Query: 187 XXXXXXXXXXXXXNNLPNADSQH---PSLF----GALPMGYAPPYNGY-GYQASGSYGLM 238
++ H P+ G GY P Y GY Y Y
Sbjct: 326 RKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYH 385
Query: 239 QYR---LPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV 295
YR P F + G RGA+P S G A PP G G
Sbjct: 386 NYRGGYEDPYYGYEDFQ-VGARGRGGRGARGAAP--SRGRG----AAPPRGRAGYSQRGG 438
Query: 296 PG 297
PG
Sbjct: 439 PG 440
>RGD|1307777 [details] [associations]
symbol:Rbms1 "RNA binding motif, single stranded interacting
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1307777 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
HSSP:P29558 CTD:5937 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620
RefSeq:NP_001012184.1 UniGene:Rn.98522 ProteinModelPortal:Q5PQP1
SMR:Q5PQP1 PRIDE:Q5PQP1 Ensembl:ENSRNOT00000011682 GeneID:362138
KEGG:rno:362138 UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
Length = 403
Score = 150 (57.9 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 49/174 (28%), Positives = 83/174 (47%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P + T+ L+ + + + + I DK T +G FV S A KAV
Sbjct: 61 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAV 120
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 121 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 171
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWAD 182
+LR S TS+G F + E+ E+ A + NGK K G S P L+ K+AD
Sbjct: 172 VLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD 225
>UNIPROTKB|Q5PQP1 [details] [associations]
symbol:Rbms1 "RNA-binding motif,
single-stranded-interacting protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 HSSP:P29558 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620 RefSeq:NP_001012184.1
UniGene:Rn.98522 ProteinModelPortal:Q5PQP1 SMR:Q5PQP1 PRIDE:Q5PQP1
Ensembl:ENSRNOT00000011682 GeneID:362138 KEGG:rno:362138
UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
Length = 403
Score = 150 (57.9 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 49/174 (28%), Positives = 83/174 (47%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P + T+ L+ + + + + I DK T +G FV S A KAV
Sbjct: 61 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAV 120
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 121 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 171
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWAD 182
+LR S TS+G F + E+ E+ A + NGK K G S P L+ K+AD
Sbjct: 172 VLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD 225
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 135 (52.6 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 45/161 (27%), Positives = 76/161 (47%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + TE L ++++ + + +++D ++ SRGC FV S E D A+ A
Sbjct: 10 KLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAA 69
Query: 76 C-HN--KKTL-PGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131
H+ + L P + P + G L+ KLF+G + ++ E + F YG I
Sbjct: 70 RPHSIDGRVLEPRRAIPREASGQRGAHWTLK-KLFVGGIKEDTEEHHLREYFEKYGKIDA 128
Query: 132 LQILRGSQQTSK-GCAFLKYETKEQA----LAALEAINGKH 167
++I+ Q K G F+ ++ + L AING H
Sbjct: 129 IEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHH 169
Score = 52 (23.4 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 23/72 (31%), Positives = 28/72 (38%)
Query: 220 YAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRN 279
YA GYG Q S G QP +G P+ GN G + ++ G N
Sbjct: 257 YAGRGPGYGNQWEFSGGGYGNNFGNYDQQPSNYG---PMRNGNF--GVGRNKAAPYGGGN 311
Query: 280 YAMPPSGFVGSG 291
Y P G GSG
Sbjct: 312 YG--PGGSGGSG 321
>UNIPROTKB|D4A6H0 [details] [associations]
symbol:Rbms1 "RNA-binding motif,
single-stranded-interacting protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567364
ProteinModelPortal:D4A6H0 Ensembl:ENSRNOT00000047180
ArrayExpress:D4A6H0 Uniprot:D4A6H0
Length = 411
Score = 150 (57.9 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 49/174 (28%), Positives = 83/174 (47%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ +P + T+ L+ + + + + I DK T +G FV S A KAV
Sbjct: 53 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAV 112
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 113 SALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR 163
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KME-GSSVP---LVVKWAD 182
+LR S TS+G F + E+ E+ A + NGK K G S P L+ K+AD
Sbjct: 164 VLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD 217
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 152 (58.6 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 43/171 (25%), Positives = 92/171 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D T +RG FV +++ A +AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
+N + G + + A+ ++LF+G +PK+ ++ ++ FS + + D+ +
Sbjct: 223 YNNHEIRSGKHIGVCISVAN-------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWAD 182
++ ++G FL+YE K A A ++GK K+ G+ V+WAD
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG--TVEWAD 324
Score = 137 (53.3 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 76/302 (25%), Positives = 121/302 (40%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+LFVG +PK T+ Q+L F + L D + + + +RG CF+ + A +A
Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 303
Query: 74 NACHNKKT-LPGASSPLQ----VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 128
+ K + G ++ ++ D E+ LF+ L V+E + FS +G
Sbjct: 304 RRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGK 363
Query: 129 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV-VKWADTE-KE 186
++ ++ L K AF+ ++ ++ A+ A+E +NGK +EG ++ +V K D + KE
Sbjct: 364 LERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKD-LEGENIEIVFAKPPDQKRKE 415
Query: 187 XXXXXXXXXXXXXNNLPNADSQH---PSLF----GALPMGYAPPYNGY-GYQASGSYGLM 238
++ H P+ G GY P Y GY Y Y
Sbjct: 416 RKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYH 475
Query: 239 QYR---LPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV 295
YR P F + G RGA+P S G A PP G G
Sbjct: 476 NYRGGYEDPYYGYEDFQ-VGARGRGGRGARGAAP--SRGRG----AAPPRGRAGYSQRGG 528
Query: 296 PG 297
PG
Sbjct: 529 PG 530
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 146 (56.5 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 127 (49.8 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 49 (22.3 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 253 GIIPPVNQGNAMRGASPDLSSNMGPRNYA-MPPSGFVGSGYPAVPGLQYPMPYPGGMLGH 311
G +P Q A R A +++ PR A + + S +PA+ LQ P P + G
Sbjct: 497 GGVPTAVQNLAPRAA---VAAAAAPRAVAPYKYASSIRSPHPAIQPLQAPQPAVH-VQGQ 552
Query: 312 RPLNNSPGSVSP 323
PL S + +P
Sbjct: 553 EPLTASMLAAAP 564
>UNIPROTKB|F8W1T6 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC090681 HGNC:HGNC:9909 EMBL:AC097104 IPI:IPI01022509
ProteinModelPortal:F8W1T6 SMR:F8W1T6 Ensembl:ENST00000552247
ArrayExpress:F8W1T6 Bgee:F8W1T6 Uniprot:F8W1T6
Length = 344
Score = 148 (57.2 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 48/174 (27%), Positives = 82/174 (47%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 55 KTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 114
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 115 TALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTR 165
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-K----MEGSSVPLVVKWAD 182
ILR + TS+G F + E+ E+ A + NGK+ K + S PL+ K+AD
Sbjct: 166 ILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFAD 219
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 146 (56.5 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 127 (49.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 48 (22.0 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 255 IPPVNQGNAMRGASPDLSSN-MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRP 313
+P Q A R A + + P YA V S +PA+ LQ P P + G P
Sbjct: 470 VPTAVQNLAPRAAVAAAAPRAVAPYKYASS----VRSPHPAIQPLQAPQPAVH-VQGQEP 524
Query: 314 LNNSPGSVSP 323
L S + +P
Sbjct: 525 LTASMLAAAP 534
WARNING: HSPs involving 497 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 354 318 0.00083 116 3 11 22 0.44 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 747
No. of states in DFA: 603 (64 KB)
Total size of DFA: 206 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.71u 0.08s 28.79t Elapsed: 00:00:02
Total cpu time: 28.77u 0.08s 28.85t Elapsed: 00:00:02
Start: Mon May 20 18:50:47 2013 End: Mon May 20 18:50:49 2013
WARNINGS ISSUED: 2