Query 018554
Match_columns 354
No_of_seqs 312 out of 2432
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0144 RNA-binding protein CU 100.0 1.3E-48 2.7E-53 351.0 22.3 225 6-230 26-254 (510)
2 TIGR01659 sex-lethal sex-letha 100.0 1.1E-36 2.5E-41 282.2 25.2 174 8-185 101-276 (346)
3 TIGR01628 PABP-1234 polyadenyl 100.0 2.9E-33 6.3E-38 279.3 34.3 180 10-194 174-374 (562)
4 KOG0148 Apoptosis-promoting RN 100.0 8.2E-35 1.8E-39 247.8 18.5 168 7-185 55-239 (321)
5 KOG0117 Heterogeneous nuclear 100.0 3.6E-33 7.7E-38 252.7 28.2 173 10-192 79-339 (506)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.3E-32 2.7E-37 259.7 20.8 169 13-185 2-172 (352)
7 TIGR01645 half-pint poly-U bin 100.0 5.5E-32 1.2E-36 263.4 19.7 168 11-184 104-284 (612)
8 KOG0145 RNA-binding protein EL 100.0 4.8E-32 1E-36 229.6 14.3 171 10-184 37-209 (360)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.5E-31 7.7E-36 249.9 21.2 171 11-185 86-350 (352)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 6.1E-30 1.3E-34 248.9 30.1 165 11-186 55-309 (578)
11 TIGR01628 PABP-1234 polyadenyl 100.0 6.3E-30 1.4E-34 255.4 19.0 160 16-181 2-164 (562)
12 TIGR01622 SF-CC1 splicing fact 100.0 1.9E-29 4.1E-34 246.1 21.3 167 11-184 86-266 (457)
13 KOG0146 RNA-binding protein ET 100.0 1.3E-28 2.8E-33 209.5 10.7 177 5-185 10-366 (371)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.5E-27 7.7E-32 230.4 20.4 161 13-185 1-175 (481)
15 KOG0131 Splicing factor 3b, su 99.9 5.1E-28 1.1E-32 195.2 10.0 169 10-184 5-177 (203)
16 KOG0145 RNA-binding protein EL 99.9 2E-26 4.4E-31 195.5 16.1 174 6-183 119-357 (360)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.2E-26 1.3E-30 221.7 20.7 162 12-183 273-479 (481)
18 KOG0144 RNA-binding protein CU 99.9 8.1E-27 1.7E-31 210.6 11.4 173 6-182 116-502 (510)
19 KOG0127 Nucleolar protein fibr 99.9 1.4E-25 2.9E-30 207.9 17.4 169 13-187 116-381 (678)
20 KOG0109 RNA-binding protein LA 99.9 1.4E-26 3E-31 199.5 9.8 147 15-183 3-149 (346)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.5E-25 5.4E-30 220.0 19.5 167 12-184 293-502 (509)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.4E-25 1.4E-29 217.1 20.0 162 9-183 170-374 (509)
23 KOG4205 RNA-binding protein mu 99.9 1.1E-25 2.5E-30 202.8 11.2 170 13-188 5-180 (311)
24 KOG0127 Nucleolar protein fibr 99.9 9.5E-25 2.1E-29 202.4 15.9 164 15-184 6-196 (678)
25 TIGR01622 SF-CC1 splicing fact 99.9 3.2E-23 7E-28 202.3 20.3 163 13-184 185-448 (457)
26 KOG0123 Polyadenylate-binding 99.9 4.7E-23 1E-27 192.4 17.2 158 15-190 2-159 (369)
27 KOG0124 Polypyrimidine tract-b 99.9 2.4E-23 5.2E-28 184.4 11.7 162 14-181 113-287 (544)
28 TIGR01645 half-pint poly-U bin 99.9 7.4E-21 1.6E-25 185.8 19.9 79 12-93 202-280 (612)
29 KOG0148 Apoptosis-promoting RN 99.9 1.2E-21 2.7E-26 167.5 10.6 141 10-185 2-143 (321)
30 KOG0110 RNA-binding protein (R 99.9 2.1E-21 4.6E-26 185.7 13.5 168 13-186 514-695 (725)
31 KOG0123 Polyadenylate-binding 99.9 9.1E-21 2E-25 177.1 16.7 166 14-188 76-250 (369)
32 KOG0147 Transcriptional coacti 99.8 1.5E-21 3.2E-26 182.1 7.1 165 10-181 175-355 (549)
33 KOG0146 RNA-binding protein ET 99.8 2.7E-19 5.8E-24 152.9 15.3 117 86-202 2-119 (371)
34 KOG0105 Alternative splicing f 99.8 2E-18 4.4E-23 139.9 12.8 145 11-167 3-174 (241)
35 KOG4212 RNA-binding protein hn 99.8 4.4E-18 9.5E-23 154.4 16.2 161 13-180 43-290 (608)
36 PLN03134 glycine-rich RNA-bind 99.8 4.6E-18 9.9E-23 138.8 10.5 85 11-98 31-115 (144)
37 KOG4206 Spliceosomal protein s 99.8 4.8E-17 1E-21 137.0 15.9 159 12-182 7-220 (221)
38 KOG1457 RNA binding protein (c 99.7 7.6E-17 1.6E-21 134.6 12.6 156 10-168 30-273 (284)
39 KOG0149 Predicted RNA-binding 99.7 1.3E-17 2.8E-22 140.7 7.4 77 10-88 8-84 (247)
40 KOG0147 Transcriptional coacti 99.7 4.2E-17 9E-22 152.6 10.9 160 13-182 277-526 (549)
41 PLN03134 glycine-rich RNA-bind 99.7 7.5E-17 1.6E-21 131.7 11.2 82 99-183 31-113 (144)
42 KOG4211 Splicing factor hnRNP- 99.7 2.5E-16 5.5E-21 145.5 15.7 161 10-181 6-179 (510)
43 KOG0106 Alternative splicing f 99.7 5.5E-17 1.2E-21 138.0 6.6 144 15-179 2-166 (216)
44 TIGR01659 sex-lethal sex-letha 99.7 4E-16 8.6E-21 145.2 11.0 86 11-97 190-275 (346)
45 KOG0149 Predicted RNA-binding 99.7 1.8E-16 4E-21 133.8 7.2 79 101-183 11-90 (247)
46 KOG0132 RNA polymerase II C-te 99.7 7.6E-15 1.7E-19 142.0 19.0 77 13-98 420-496 (894)
47 KOG1456 Heterogeneous nuclear 99.7 7E-15 1.5E-19 131.4 17.3 171 10-191 27-206 (494)
48 KOG0124 Polypyrimidine tract-b 99.6 2.8E-15 6.1E-20 133.5 12.8 68 10-77 206-273 (544)
49 KOG0122 Translation initiation 99.6 1.1E-15 2.4E-20 129.5 9.0 86 9-97 184-269 (270)
50 KOG0110 RNA-binding protein (R 99.6 4.5E-15 9.7E-20 142.7 12.7 161 10-182 381-596 (725)
51 KOG1190 Polypyrimidine tract-b 99.6 2E-15 4.3E-20 136.4 9.3 173 11-194 25-238 (492)
52 PF00076 RRM_1: RNA recognitio 99.6 2.5E-15 5.4E-20 107.2 7.9 63 17-80 1-63 (70)
53 KOG0121 Nuclear cap-binding pr 99.6 2.4E-15 5.1E-20 115.0 7.0 83 10-95 32-114 (153)
54 TIGR01648 hnRNP-R-Q heterogene 99.6 4.3E-15 9.2E-20 145.4 10.3 108 12-130 231-369 (578)
55 COG0724 RNA-binding proteins ( 99.6 3.3E-14 7.1E-19 128.6 14.2 144 14-160 115-284 (306)
56 PF00076 RRM_1: RNA recognitio 99.6 1.5E-14 3.2E-19 103.2 9.1 66 105-171 1-66 (70)
57 KOG1548 Transcription elongati 99.6 1.5E-13 3.3E-18 122.0 16.5 161 12-182 132-350 (382)
58 KOG1190 Polypyrimidine tract-b 99.6 7.2E-14 1.6E-18 126.4 14.5 158 14-184 150-373 (492)
59 KOG0126 Predicted RNA-binding 99.5 4.8E-16 1E-20 125.9 -0.9 79 11-92 32-110 (219)
60 KOG4212 RNA-binding protein hn 99.5 1.9E-13 4.2E-18 124.5 15.5 68 10-78 211-278 (608)
61 KOG0122 Translation initiation 99.5 3.5E-14 7.6E-19 120.5 9.6 83 99-184 186-269 (270)
62 KOG0107 Alternative splicing f 99.5 2.7E-14 5.8E-19 115.3 7.9 80 11-98 7-86 (195)
63 PF14259 RRM_6: RNA recognitio 99.5 4.5E-14 9.8E-19 101.0 7.9 66 17-84 1-66 (70)
64 KOG0125 Ataxin 2-binding prote 99.5 5.5E-14 1.2E-18 123.9 9.3 79 102-184 96-174 (376)
65 KOG0129 Predicted RNA-binding 99.5 3.5E-13 7.5E-18 125.8 15.0 157 6-162 251-432 (520)
66 KOG0120 Splicing factor U2AF, 99.5 1.1E-13 2.5E-18 131.3 11.6 172 8-185 283-493 (500)
67 PLN03120 nucleic acid binding 99.5 9.5E-14 2.1E-18 121.4 9.8 76 14-96 4-79 (260)
68 KOG0125 Ataxin 2-binding prote 99.5 5.5E-14 1.2E-18 123.9 8.2 88 7-99 89-176 (376)
69 KOG0113 U1 small nuclear ribon 99.5 8.9E-14 1.9E-18 121.2 8.9 82 10-94 97-178 (335)
70 KOG4207 Predicted splicing fac 99.5 6.1E-14 1.3E-18 116.0 6.3 85 8-95 7-91 (256)
71 PLN03120 nucleic acid binding 99.5 2.4E-13 5.3E-18 118.9 10.4 75 102-182 4-78 (260)
72 PF14259 RRM_6: RNA recognitio 99.5 5E-13 1.1E-17 95.5 9.6 67 105-172 1-67 (70)
73 PLN03213 repressor of silencin 99.5 2.7E-13 5.8E-18 125.4 9.3 81 9-96 5-87 (759)
74 KOG0107 Alternative splicing f 99.4 2.6E-13 5.6E-18 109.7 7.5 76 102-184 10-85 (195)
75 KOG0121 Nuclear cap-binding pr 99.4 2.4E-13 5.1E-18 104.2 6.8 82 100-184 34-116 (153)
76 KOG0113 U1 small nuclear ribon 99.4 5.7E-13 1.2E-17 116.2 8.6 80 101-181 100-180 (335)
77 KOG0132 RNA polymerase II C-te 99.4 1E-11 2.2E-16 120.7 17.9 79 102-188 421-499 (894)
78 smart00362 RRM_2 RNA recogniti 99.4 1.4E-12 2.9E-17 92.7 8.7 63 16-80 1-63 (72)
79 PLN03121 nucleic acid binding 99.4 1.2E-12 2.5E-17 112.8 9.3 74 13-93 4-77 (243)
80 KOG0108 mRNA cleavage and poly 99.4 5.7E-13 1.2E-17 125.9 8.1 82 15-99 19-100 (435)
81 KOG0114 Predicted RNA-binding 99.4 1.6E-12 3.4E-17 95.9 8.5 109 6-127 10-118 (124)
82 PLN03213 repressor of silencin 99.4 2.5E-12 5.5E-17 119.0 11.0 83 102-190 10-94 (759)
83 KOG4207 Predicted splicing fac 99.4 4.7E-13 1E-17 110.8 5.6 78 102-182 13-91 (256)
84 KOG0111 Cyclophilin-type pepti 99.4 2.5E-13 5.5E-18 113.4 3.9 83 102-187 10-93 (298)
85 smart00360 RRM RNA recognition 99.4 2.4E-12 5.3E-17 91.1 8.4 62 19-80 1-62 (71)
86 KOG0126 Predicted RNA-binding 99.4 1.2E-13 2.7E-18 112.0 1.7 103 71-180 8-111 (219)
87 KOG4454 RNA binding protein (R 99.4 1.7E-13 3.6E-18 114.4 1.4 139 10-165 5-147 (267)
88 smart00362 RRM_2 RNA recogniti 99.4 5.1E-12 1.1E-16 89.7 9.0 71 104-178 1-71 (72)
89 KOG0114 Predicted RNA-binding 99.4 1.1E-11 2.3E-16 91.6 10.6 84 102-190 18-101 (124)
90 KOG0111 Cyclophilin-type pepti 99.3 7.5E-13 1.6E-17 110.6 4.5 87 11-100 7-93 (298)
91 KOG1365 RNA-binding protein Fu 99.3 8.2E-12 1.8E-16 112.3 11.3 165 12-182 159-360 (508)
92 KOG0130 RNA-binding protein RB 99.3 2.1E-12 4.6E-17 99.8 6.0 81 11-94 69-149 (170)
93 KOG0117 Heterogeneous nuclear 99.3 4.8E-12 1E-16 116.0 9.1 81 102-182 83-164 (506)
94 PLN03121 nucleic acid binding 99.3 1.2E-11 2.6E-16 106.6 10.0 74 102-181 5-78 (243)
95 cd00590 RRM RRM (RNA recogniti 99.3 2.3E-11 5E-16 86.8 9.5 73 16-92 1-73 (74)
96 cd00590 RRM RRM (RNA recogniti 99.3 3.7E-11 8.1E-16 85.7 9.9 74 104-180 1-74 (74)
97 KOG0130 RNA-binding protein RB 99.3 8.2E-12 1.8E-16 96.6 6.4 80 102-184 72-152 (170)
98 KOG0108 mRNA cleavage and poly 99.3 1.2E-11 2.7E-16 116.9 8.8 88 103-193 19-107 (435)
99 KOG1456 Heterogeneous nuclear 99.3 3.3E-10 7.1E-15 101.8 16.3 156 14-182 120-361 (494)
100 smart00360 RRM RNA recognition 99.2 3.9E-11 8.3E-16 84.8 8.0 69 107-178 1-70 (71)
101 KOG0112 Large RNA-binding prot 99.2 6.7E-12 1.4E-16 123.8 5.0 168 8-186 366-533 (975)
102 smart00361 RRM_1 RNA recogniti 99.2 4.3E-11 9.4E-16 85.4 7.3 56 28-84 2-64 (70)
103 KOG0120 Splicing factor U2AF, 99.2 2.8E-11 6.1E-16 115.1 8.0 160 11-183 172-368 (500)
104 KOG0153 Predicted RNA-binding 99.2 3.4E-11 7.3E-16 107.3 8.0 76 101-183 227-302 (377)
105 PF13893 RRM_5: RNA recognitio 99.2 8.9E-11 1.9E-15 79.9 7.9 56 119-181 1-56 (56)
106 KOG0109 RNA-binding protein LA 99.2 1.7E-11 3.7E-16 106.7 5.4 72 103-184 3-74 (346)
107 KOG0131 Splicing factor 3b, su 99.2 3E-11 6.4E-16 98.5 5.8 78 102-182 9-87 (203)
108 COG0724 RNA-binding proteins ( 99.2 1.1E-10 2.3E-15 105.5 9.8 78 102-182 115-193 (306)
109 KOG0105 Alternative splicing f 99.2 4.9E-11 1.1E-15 97.3 6.5 79 101-184 5-83 (241)
110 KOG4211 Splicing factor hnRNP- 99.2 4E-09 8.6E-14 98.4 19.2 145 12-162 101-340 (510)
111 KOG0226 RNA-binding proteins [ 99.2 3.8E-11 8.2E-16 102.7 5.1 162 12-180 94-266 (290)
112 KOG4205 RNA-binding protein mu 99.1 6.2E-11 1.3E-15 107.6 5.7 89 13-105 96-184 (311)
113 PF13893 RRM_5: RNA recognitio 99.1 1.9E-10 4.1E-15 78.3 6.4 56 31-94 1-56 (56)
114 KOG0128 RNA-binding protein SA 99.1 2.1E-12 4.5E-17 126.8 -5.0 150 12-183 665-814 (881)
115 smart00361 RRM_1 RNA recogniti 99.1 4.4E-10 9.6E-15 80.1 7.6 60 116-178 2-69 (70)
116 KOG0415 Predicted peptidyl pro 99.1 1.7E-10 3.8E-15 102.9 6.1 83 11-96 236-318 (479)
117 KOG4849 mRNA cleavage factor I 99.1 1.7E-08 3.7E-13 90.1 17.8 81 102-184 80-163 (498)
118 KOG4210 Nuclear localization s 99.0 4.9E-10 1.1E-14 101.4 6.1 168 12-184 86-264 (285)
119 KOG4206 Spliceosomal protein s 99.0 1.7E-09 3.6E-14 91.7 7.2 80 102-186 9-92 (221)
120 KOG4208 Nucleolar RNA-binding 99.0 2.5E-09 5.4E-14 89.2 8.1 82 8-92 43-125 (214)
121 KOG0415 Predicted peptidyl pro 98.9 1.5E-09 3.2E-14 97.1 6.7 87 97-186 234-321 (479)
122 KOG0153 Predicted RNA-binding 98.9 2.6E-09 5.7E-14 95.4 7.6 82 7-96 221-302 (377)
123 KOG4660 Protein Mei2, essentia 98.9 8.8E-09 1.9E-13 97.5 11.4 69 7-80 68-136 (549)
124 PF04059 RRM_2: RNA recognitio 98.9 1.9E-08 4E-13 75.5 9.4 81 15-95 2-85 (97)
125 KOG4661 Hsp27-ERE-TATA-binding 98.9 6.5E-09 1.4E-13 98.2 7.7 82 10-94 401-482 (940)
126 KOG0226 RNA-binding proteins [ 98.8 6.7E-09 1.4E-13 89.1 5.9 80 10-92 186-265 (290)
127 KOG4208 Nucleolar RNA-binding 98.8 1.7E-08 3.6E-13 84.3 7.3 80 102-184 49-130 (214)
128 KOG1365 RNA-binding protein Fu 98.8 9.3E-08 2E-12 86.6 12.3 150 10-163 56-226 (508)
129 KOG2193 IGF-II mRNA-binding pr 98.8 1E-09 2.2E-14 100.1 -0.5 152 15-181 2-154 (584)
130 KOG0533 RRM motif-containing p 98.8 3.2E-08 6.9E-13 86.6 8.3 81 99-182 80-160 (243)
131 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.2E-08 4.8E-13 94.7 7.3 78 102-182 405-483 (940)
132 KOG0533 RRM motif-containing p 98.6 1.7E-07 3.6E-12 82.1 8.6 82 10-95 79-160 (243)
133 KOG0116 RasGAP SH3 binding pro 98.6 8.7E-08 1.9E-12 90.5 6.8 65 11-75 285-349 (419)
134 KOG4307 RNA binding protein RB 98.6 2.7E-07 5.8E-12 89.4 9.7 74 103-179 868-942 (944)
135 KOG1457 RNA binding protein (c 98.5 2.3E-07 5E-12 78.3 7.4 86 102-187 34-121 (284)
136 KOG4209 Splicing factor RNPS1, 98.5 1.5E-07 3.2E-12 82.6 5.4 82 8-93 95-176 (231)
137 KOG4454 RNA binding protein (R 98.5 4.8E-08 1E-12 82.1 2.2 79 102-182 9-87 (267)
138 KOG4307 RNA binding protein RB 98.5 3.6E-07 7.8E-12 88.6 7.8 162 11-180 308-510 (944)
139 KOG4849 mRNA cleavage factor I 98.4 4.5E-05 9.9E-10 68.6 19.3 73 11-84 77-151 (498)
140 KOG0106 Alternative splicing f 98.4 1.8E-07 4E-12 80.1 3.7 72 103-184 2-73 (216)
141 KOG4209 Splicing factor RNPS1, 98.4 6.7E-07 1.5E-11 78.5 6.8 83 96-182 95-178 (231)
142 KOG0116 RasGAP SH3 binding pro 98.4 4E-06 8.8E-11 79.3 12.1 76 102-181 288-364 (419)
143 KOG1548 Transcription elongati 98.4 1.3E-06 2.7E-11 78.5 7.7 78 102-182 134-219 (382)
144 PF04059 RRM_2: RNA recognitio 98.3 5.4E-06 1.2E-10 62.3 9.6 84 103-186 2-89 (97)
145 KOG4660 Protein Mei2, essentia 98.3 5.4E-07 1.2E-11 85.6 4.5 65 100-168 73-137 (549)
146 KOG0151 Predicted splicing reg 98.2 2E-06 4.4E-11 83.7 6.2 79 102-183 174-256 (877)
147 PF11608 Limkain-b1: Limkain b 98.1 1.4E-05 3E-10 57.4 7.5 70 103-184 3-77 (90)
148 PF08777 RRM_3: RNA binding mo 98.1 1.7E-05 3.6E-10 61.0 7.9 58 103-165 2-59 (105)
149 KOG0151 Predicted splicing reg 98.0 7.6E-06 1.6E-10 79.8 6.0 82 11-95 171-255 (877)
150 KOG4676 Splicing factor, argin 98.0 2.4E-06 5.1E-11 77.9 2.3 146 14-163 7-209 (479)
151 KOG1995 Conserved Zn-finger pr 98.0 8E-06 1.7E-10 74.0 5.5 87 8-97 60-154 (351)
152 PF08777 RRM_3: RNA binding mo 97.9 2.8E-05 6E-10 59.8 5.9 58 15-78 2-59 (105)
153 PF14605 Nup35_RRM_2: Nup53/35 97.8 4.7E-05 1E-09 50.7 5.3 53 14-73 1-53 (53)
154 PF11608 Limkain-b1: Limkain b 97.8 0.00016 3.5E-09 52.0 7.6 68 15-95 3-75 (90)
155 PF14605 Nup35_RRM_2: Nup53/35 97.7 8E-05 1.7E-09 49.6 5.0 52 103-160 2-53 (53)
156 KOG4210 Nuclear localization s 97.7 3.2E-05 6.8E-10 70.3 4.0 86 8-97 178-264 (285)
157 KOG2314 Translation initiation 97.7 9E-05 2E-09 70.8 6.4 74 10-84 54-133 (698)
158 COG5175 MOT2 Transcriptional r 97.6 0.00017 3.6E-09 64.8 7.1 81 102-185 114-204 (480)
159 KOG0129 Predicted RNA-binding 97.6 0.00021 4.5E-09 67.9 7.9 68 8-75 364-432 (520)
160 KOG1995 Conserved Zn-finger pr 97.6 5.7E-05 1.2E-09 68.6 3.6 79 102-183 66-153 (351)
161 KOG1855 Predicted RNA-binding 97.6 9.1E-05 2E-09 68.6 4.7 67 101-167 230-310 (484)
162 KOG0128 RNA-binding protein SA 97.5 9.1E-06 2E-10 81.0 -3.0 149 13-166 570-732 (881)
163 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00074 1.6E-08 51.1 7.0 78 102-183 6-91 (100)
164 KOG0115 RNA-binding protein p5 97.4 0.00044 9.4E-09 60.1 6.1 89 68-165 6-94 (275)
165 KOG2314 Translation initiation 97.3 0.00043 9.3E-09 66.3 6.5 76 102-179 58-139 (698)
166 KOG1855 Predicted RNA-binding 97.3 0.00029 6.4E-09 65.3 4.3 68 11-78 228-308 (484)
167 KOG3152 TBP-binding protein, a 97.3 0.00023 5E-09 61.7 3.3 71 13-83 73-155 (278)
168 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.00066 1.4E-08 51.4 5.3 82 11-96 3-91 (100)
169 KOG0115 RNA-binding protein p5 97.0 0.0018 4E-08 56.3 6.5 64 15-79 32-95 (275)
170 KOG2193 IGF-II mRNA-binding pr 97.0 0.0011 2.4E-08 61.4 5.3 79 103-188 2-80 (584)
171 COG5175 MOT2 Transcriptional r 97.0 0.0017 3.8E-08 58.5 6.3 105 15-122 115-240 (480)
172 KOG2591 c-Mpl binding protein, 97.0 0.056 1.2E-06 52.2 16.5 59 101-165 174-234 (684)
173 PF10309 DUF2414: Protein of u 97.0 0.0046 1E-07 42.2 6.8 54 14-76 5-62 (62)
174 PF10309 DUF2414: Protein of u 97.0 0.0044 9.5E-08 42.3 6.6 55 102-163 5-62 (62)
175 KOG2202 U2 snRNP splicing fact 96.9 0.00045 9.8E-09 60.1 1.7 63 117-182 83-146 (260)
176 KOG1996 mRNA splicing factor [ 96.8 0.0034 7.4E-08 55.6 6.5 67 116-185 300-368 (378)
177 KOG2416 Acinus (induces apopto 96.8 0.0015 3.2E-08 63.1 4.6 84 100-188 442-526 (718)
178 PF08675 RNA_bind: RNA binding 96.7 0.0089 1.9E-07 43.1 6.8 55 14-77 9-63 (87)
179 KOG2416 Acinus (induces apopto 96.7 0.0015 3.3E-08 63.0 3.7 82 10-97 440-522 (718)
180 PF07576 BRAP2: BRCA1-associat 96.5 0.045 9.7E-07 42.3 10.3 72 8-81 7-79 (110)
181 KOG3152 TBP-binding protein, a 96.5 0.002 4.4E-08 56.0 2.9 71 101-172 73-156 (278)
182 KOG0112 Large RNA-binding prot 96.4 0.0052 1.1E-07 62.3 5.6 79 10-95 451-529 (975)
183 KOG2202 U2 snRNP splicing fact 96.1 0.0038 8.2E-08 54.5 2.3 60 29-92 83-143 (260)
184 PF15023 DUF4523: Protein of u 95.7 0.064 1.4E-06 42.8 7.6 76 9-95 81-160 (166)
185 PF07576 BRAP2: BRCA1-associat 95.7 0.11 2.5E-06 40.0 9.0 65 103-168 14-79 (110)
186 KOG2591 c-Mpl binding protein, 95.6 0.05 1.1E-06 52.5 7.9 66 5-77 166-233 (684)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.042 9.1E-07 46.4 6.7 82 102-183 7-97 (176)
188 PF08952 DUF1866: Domain of un 95.6 0.05 1.1E-06 43.9 6.7 55 118-183 52-106 (146)
189 KOG1996 mRNA splicing factor [ 95.5 0.036 7.8E-07 49.3 6.3 64 28-94 300-364 (378)
190 KOG4676 Splicing factor, argin 95.5 0.021 4.5E-07 52.8 4.6 79 103-184 8-90 (479)
191 KOG0804 Cytoplasmic Zn-finger 95.1 0.086 1.9E-06 49.8 7.5 70 11-82 71-141 (493)
192 KOG2068 MOT2 transcription fac 94.8 0.027 5.8E-07 51.3 3.3 78 15-95 78-161 (327)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.03 6.4E-07 47.3 3.4 75 11-85 4-84 (176)
194 PF07292 NID: Nmi/IFP 35 domai 94.7 0.021 4.5E-07 42.0 2.0 65 59-123 1-73 (88)
195 PF15023 DUF4523: Protein of u 94.6 0.2 4.4E-06 40.0 7.5 73 99-181 83-159 (166)
196 KOG2068 MOT2 transcription fac 94.5 0.016 3.5E-07 52.7 1.1 79 103-184 78-163 (327)
197 PF08675 RNA_bind: RNA binding 94.3 0.26 5.5E-06 35.7 6.7 55 103-165 10-64 (87)
198 KOG2893 Zn finger protein [Gen 94.3 3.3 7.2E-05 36.0 18.1 8 111-118 17-24 (341)
199 KOG0804 Cytoplasmic Zn-finger 94.1 0.15 3.3E-06 48.2 6.6 66 102-168 74-140 (493)
200 KOG4285 Mitotic phosphoprotein 94.0 0.22 4.7E-06 44.7 7.2 75 105-188 200-274 (350)
201 PF11767 SET_assoc: Histone ly 94.0 0.19 4.1E-06 34.9 5.4 50 24-82 10-59 (66)
202 KOG4574 RNA-binding protein (c 93.9 0.038 8.3E-07 55.9 2.7 74 15-95 299-372 (1007)
203 KOG4574 RNA-binding protein (c 93.9 0.035 7.6E-07 56.1 2.2 75 104-184 300-374 (1007)
204 KOG4285 Mitotic phosphoprotein 93.3 0.35 7.6E-06 43.4 7.2 63 13-84 196-258 (350)
205 PF10567 Nab6_mRNP_bdg: RNA-re 93.3 4.4 9.6E-05 36.5 14.0 152 10-164 11-212 (309)
206 PF04847 Calcipressin: Calcipr 92.5 0.32 7E-06 41.3 5.7 61 115-183 8-70 (184)
207 KOG2236 Uncharacterized conser 92.5 7.5 0.00016 37.3 15.0 13 119-131 247-259 (483)
208 PF08952 DUF1866: Domain of un 91.7 0.36 7.9E-06 39.0 4.8 53 30-94 52-104 (146)
209 KOG2253 U1 snRNP complex, subu 91.3 0.021 4.5E-07 56.3 -3.1 65 10-84 36-100 (668)
210 KOG2893 Zn finger protein [Gen 90.2 4.2 9E-05 35.4 10.1 11 219-229 132-142 (341)
211 KOG2135 Proteins containing th 89.3 0.21 4.5E-06 47.6 1.8 60 115-183 386-445 (526)
212 KOG2236 Uncharacterized conser 88.7 8 0.00017 37.1 11.7 7 147-153 318-324 (483)
213 KOG2318 Uncharacterized conser 88.3 2 4.3E-05 42.2 7.6 79 101-180 173-304 (650)
214 PF11767 SET_assoc: Histone ly 88.1 1.7 3.8E-05 30.1 5.3 50 112-169 10-59 (66)
215 COG5180 PBP1 Protein interacti 86.7 8.4 0.00018 37.0 10.5 12 234-245 547-558 (654)
216 PRK14548 50S ribosomal protein 86.0 2.6 5.6E-05 30.8 5.5 58 16-76 22-81 (84)
217 PF04847 Calcipressin: Calcipr 85.5 1.6 3.4E-05 37.1 4.8 59 27-94 8-68 (184)
218 KOG2135 Proteins containing th 84.9 0.43 9.3E-06 45.5 1.2 76 12-97 370-446 (526)
219 KOG4410 5-formyltetrahydrofola 83.7 3.5 7.7E-05 36.9 6.3 53 10-67 326-378 (396)
220 PF03880 DbpA: DbpA RNA bindin 83.7 4.9 0.00011 28.4 6.1 59 112-181 11-74 (74)
221 TIGR03636 L23_arch archaeal ri 83.5 4.1 8.9E-05 29.2 5.5 58 16-76 15-74 (77)
222 KOG2253 U1 snRNP complex, subu 82.3 0.76 1.6E-05 45.7 1.8 64 101-173 39-102 (668)
223 KOG4483 Uncharacterized conser 80.5 4.2 9.1E-05 38.2 5.7 58 11-75 388-446 (528)
224 PF14111 DUF4283: Domain of un 78.1 3.3 7.2E-05 33.6 4.1 116 13-137 14-140 (153)
225 KOG2318 Uncharacterized conser 76.3 9.3 0.0002 37.7 7.0 70 11-80 171-292 (650)
226 TIGR03636 L23_arch archaeal ri 76.1 12 0.00025 26.9 5.8 57 104-162 15-73 (77)
227 PF10567 Nab6_mRNP_bdg: RNA-re 75.9 6.7 0.00015 35.4 5.5 65 96-160 9-81 (309)
228 PF03880 DbpA: DbpA RNA bindin 74.6 15 0.00033 25.9 6.2 64 16-92 2-72 (74)
229 COG0445 GidA Flavin-dependent 73.0 13 0.00027 37.1 7.0 87 58-151 238-343 (621)
230 PRK14548 50S ribosomal protein 72.6 15 0.00033 26.8 5.8 57 104-162 22-80 (84)
231 COG5594 Uncharacterized integr 71.1 6.1 0.00013 40.8 4.6 32 9-40 203-235 (827)
232 PF15513 DUF4651: Domain of un 69.7 9.9 0.00021 25.9 3.9 21 116-136 8-28 (62)
233 COG5638 Uncharacterized conser 69.2 31 0.00066 32.7 8.3 40 10-49 142-186 (622)
234 KOG2891 Surface glycoprotein [ 66.2 8.7 0.00019 34.3 4.0 34 102-135 149-194 (445)
235 PTZ00191 60S ribosomal protein 66.1 19 0.0004 29.2 5.6 57 16-75 83-141 (145)
236 KOG2295 C2H2 Zn-finger protein 65.7 0.85 1.8E-05 44.4 -2.5 66 10-75 227-295 (648)
237 PRK05738 rplW 50S ribosomal pr 62.9 25 0.00055 26.1 5.5 35 16-50 21-57 (92)
238 PF03468 XS: XS domain; Inter 62.8 15 0.00033 28.6 4.5 40 26-68 29-68 (116)
239 CHL00030 rpl23 ribosomal prote 61.5 30 0.00065 25.8 5.6 35 16-50 20-56 (93)
240 KOG2891 Surface glycoprotein [ 61.4 7.2 0.00016 34.8 2.6 37 11-47 146-194 (445)
241 TIGR02542 B_forsyth_147 Bacter 58.1 22 0.00048 27.4 4.4 44 110-153 82-129 (145)
242 KOG4483 Uncharacterized conser 58.1 38 0.00082 32.1 6.7 56 101-162 390-446 (528)
243 PF03468 XS: XS domain; Inter 57.2 6.3 0.00014 30.8 1.4 41 114-156 29-69 (116)
244 PRK11901 hypothetical protein; 56.9 23 0.0005 32.7 5.1 55 110-166 250-307 (327)
245 PF15513 DUF4651: Domain of un 56.4 26 0.00057 23.9 4.1 19 28-46 8-26 (62)
246 PF02714 DUF221: Domain of unk 55.2 23 0.0005 32.8 5.1 56 59-124 1-56 (325)
247 COG5193 LHP1 La protein, small 54.4 5.3 0.00012 37.6 0.7 65 11-75 171-245 (438)
248 PRK01178 rps24e 30S ribosomal 54.1 37 0.00079 25.7 5.0 48 24-72 29-81 (99)
249 PTZ00191 60S ribosomal protein 53.0 45 0.00097 27.1 5.6 55 104-160 83-139 (145)
250 PRK12280 rplW 50S ribosomal pr 51.7 48 0.001 27.3 5.7 35 16-50 23-59 (158)
251 KOG4008 rRNA processing protei 51.3 14 0.00031 32.3 2.7 37 8-44 34-70 (261)
252 KOG4213 RNA-binding protein La 51.1 11 0.00023 31.6 1.9 59 12-75 109-169 (205)
253 KOG4410 5-formyltetrahydrofola 51.0 34 0.00073 30.9 5.0 48 102-153 330-377 (396)
254 KOG3424 40S ribosomal protein 49.3 35 0.00075 26.5 4.2 48 24-72 33-85 (132)
255 PF00403 HMA: Heavy-metal-asso 49.1 75 0.0016 21.0 5.9 54 104-162 1-58 (62)
256 PF07530 PRE_C2HC: Associated 48.0 24 0.00052 24.6 3.0 45 29-73 2-47 (68)
257 PF08734 GYD: GYD domain; Int 45.4 1.1E+02 0.0025 22.4 6.6 45 28-76 22-67 (91)
258 PF07292 NID: Nmi/IFP 35 domai 42.2 26 0.00057 25.8 2.6 34 146-179 1-34 (88)
259 PF09707 Cas_Cas2CT1978: CRISP 40.6 62 0.0014 23.7 4.3 50 12-64 23-72 (86)
260 PTZ00071 40S ribosomal protein 40.1 68 0.0015 25.6 4.8 48 24-72 34-87 (132)
261 KOG4019 Calcineurin-mediated s 39.7 17 0.00038 30.5 1.5 58 119-183 32-89 (193)
262 KOG1295 Nonsense-mediated deca 39.0 39 0.00084 31.8 3.8 76 11-86 4-82 (376)
263 PRK10905 cell division protein 38.1 88 0.0019 28.9 5.8 58 104-166 249-309 (328)
264 PF15407 Spo7_2_N: Sporulation 38.0 11 0.00023 26.3 0.0 28 11-38 24-51 (67)
265 PF11411 DNA_ligase_IV: DNA li 37.7 25 0.00054 21.1 1.5 16 24-39 19-34 (36)
266 KOG4213 RNA-binding protein La 37.1 42 0.0009 28.2 3.3 57 102-163 111-170 (205)
267 KOG2854 Possible pfkB family c 36.9 1.7E+02 0.0037 27.3 7.4 137 13-162 80-231 (343)
268 KOG1295 Nonsense-mediated deca 36.2 50 0.0011 31.1 4.0 72 102-173 7-82 (376)
269 cd04880 ACT_AAAH-PDT-like ACT 36.0 1.5E+02 0.0032 20.5 5.8 51 115-165 12-66 (75)
270 cd04904 ACT_AAAH ACT domain of 36.0 1.2E+02 0.0025 21.2 5.2 50 116-165 14-65 (74)
271 PF01071 GARS_A: Phosphoribosy 35.8 1.5E+02 0.0033 25.3 6.7 48 27-78 25-72 (194)
272 KOG2295 C2H2 Zn-finger protein 35.5 5.9 0.00013 38.9 -2.1 66 102-167 231-297 (648)
273 COG0089 RplW Ribosomal protein 34.5 57 0.0012 24.3 3.4 37 14-50 20-58 (94)
274 PF00276 Ribosomal_L23: Riboso 34.2 54 0.0012 24.3 3.2 34 16-49 21-56 (91)
275 COG5353 Uncharacterized protei 33.7 2.2E+02 0.0048 23.2 6.7 56 13-68 86-154 (161)
276 PF08156 NOP5NT: NOP5NT (NUC12 33.7 14 0.0003 25.7 -0.0 39 117-164 27-65 (67)
277 KOG0119 Splicing factor 1/bran 33.2 4.9E+02 0.011 25.8 10.9 19 58-76 206-224 (554)
278 PF02714 DUF221: Domain of unk 33.2 42 0.0009 31.1 3.1 31 146-181 1-31 (325)
279 PRK10629 EnvZ/OmpR regulon mod 33.1 2.5E+02 0.0054 22.2 7.5 59 114-182 50-109 (127)
280 COG2004 RPS24A Ribosomal prote 33.0 1.4E+02 0.0029 22.9 5.2 47 24-71 30-81 (107)
281 COG2608 CopZ Copper chaperone 32.8 1.3E+02 0.0027 20.9 4.8 45 103-152 4-48 (71)
282 cd04889 ACT_PDH-BS-like C-term 32.6 1.4E+02 0.003 19.1 5.5 42 117-160 13-55 (56)
283 cd04905 ACT_CM-PDT C-terminal 32.1 1.7E+02 0.0038 20.4 5.7 50 116-165 15-68 (80)
284 PF01071 GARS_A: Phosphoribosy 31.7 77 0.0017 27.1 4.2 62 115-179 25-86 (194)
285 COG0150 PurM Phosphoribosylami 30.5 14 0.00031 34.2 -0.4 48 28-79 275-322 (345)
286 KOG2199 Signal transducing ada 30.3 3.6E+02 0.0078 25.9 8.5 12 64-75 164-175 (462)
287 PF09707 Cas_Cas2CT1978: CRISP 30.0 1E+02 0.0023 22.5 4.1 48 102-151 25-72 (86)
288 COG2061 ACT-domain-containing 29.7 3.2E+02 0.0069 22.5 12.0 123 35-165 26-153 (170)
289 PRK11558 putative ssRNA endonu 28.7 1E+02 0.0022 23.2 3.9 50 13-65 26-75 (97)
290 KOG4019 Calcineurin-mediated s 28.6 49 0.0011 27.9 2.4 74 14-95 10-88 (193)
291 PF03439 Spt5-NGN: Early trans 28.1 56 0.0012 23.7 2.4 23 55-77 43-65 (84)
292 PRK11558 putative ssRNA endonu 27.7 98 0.0021 23.3 3.6 49 102-152 27-75 (97)
293 PRK05192 tRNA uridine 5-carbox 27.6 1.3E+02 0.0027 30.9 5.6 79 58-136 238-335 (618)
294 PRK11230 glycolate oxidase sub 27.5 1.9E+02 0.004 28.8 6.7 50 27-77 202-255 (499)
295 PF08734 GYD: GYD domain; Int 27.3 2.5E+02 0.0055 20.6 5.9 46 116-164 22-68 (91)
296 PF08544 GHMP_kinases_C: GHMP 27.2 2.2E+02 0.0048 19.8 6.1 43 29-77 37-80 (85)
297 KOG0862 Synaptobrevin/VAMP-lik 27.2 62 0.0014 28.0 2.9 13 54-66 107-119 (216)
298 PF13046 DUF3906: Protein of u 26.9 66 0.0014 22.0 2.4 33 27-61 31-63 (64)
299 COG5193 LHP1 La protein, small 26.5 32 0.00068 32.6 1.0 59 102-160 174-243 (438)
300 PF10915 DUF2709: Protein of u 26.0 1.3E+02 0.0029 25.5 4.5 74 40-127 36-117 (238)
301 PF01282 Ribosomal_S24e: Ribos 25.7 2.6E+02 0.0057 20.2 6.2 48 24-72 11-63 (84)
302 cd04908 ACT_Bt0572_1 N-termina 25.5 2.1E+02 0.0046 19.1 8.0 45 115-162 14-59 (66)
303 PRK11901 hypothetical protein; 25.2 1.4E+02 0.0031 27.7 4.9 61 11-76 242-304 (327)
304 KOG4672 Uncharacterized conser 24.5 6.4E+02 0.014 24.3 9.4 6 31-36 52-57 (487)
305 KOG4008 rRNA processing protei 24.3 51 0.0011 29.0 1.8 32 102-133 40-71 (261)
306 PF10281 Ish1: Putative stress 23.6 75 0.0016 19.1 2.0 17 25-41 3-19 (38)
307 COG5638 Uncharacterized conser 23.4 77 0.0017 30.2 2.9 40 101-140 145-189 (622)
308 CHL00123 rps6 ribosomal protei 23.3 2.5E+02 0.0054 20.9 5.3 58 16-75 10-81 (97)
309 PF13721 SecD-TM1: SecD export 23.0 2.3E+02 0.0049 21.4 5.0 43 117-166 49-92 (101)
310 COG5470 Uncharacterized conser 22.5 2E+02 0.0044 21.5 4.4 19 56-74 53-71 (96)
311 PRK11230 glycolate oxidase sub 22.3 2.5E+02 0.0054 28.0 6.5 49 116-164 203-255 (499)
312 PHA01632 hypothetical protein 22.1 99 0.0021 20.5 2.4 21 17-37 19-39 (64)
313 PF04026 SpoVG: SpoVG; InterP 21.6 1.8E+02 0.0039 21.2 4.0 26 40-65 2-27 (84)
314 TIGR01873 cas_CT1978 CRISPR-as 21.5 81 0.0017 23.2 2.2 50 13-65 24-74 (87)
315 PF01842 ACT: ACT domain; Int 21.2 2.4E+02 0.0053 18.2 4.8 47 115-163 13-61 (66)
316 PRK10905 cell division protein 20.9 1.9E+02 0.004 26.8 4.8 60 13-76 246-306 (328)
317 cd00874 RNA_Cyclase_Class_II R 20.8 4.1E+02 0.009 24.8 7.3 111 21-151 119-238 (326)
318 PF14893 PNMA: PNMA 20.4 73 0.0016 29.8 2.2 27 11-37 15-41 (331)
319 PRK08559 nusG transcription an 20.4 2.5E+02 0.0055 22.8 5.2 31 41-76 36-66 (153)
320 PRK04204 RNA 3'-terminal-phosp 20.3 7E+02 0.015 23.5 8.7 117 15-150 114-242 (343)
321 PRK09631 DNA topoisomerase IV 20.0 5E+02 0.011 26.8 8.1 95 14-125 220-318 (635)
No 1
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-48 Score=350.99 Aligned_cols=225 Identities=48% Similarity=0.786 Sum_probs=200.4
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
+.+..+.+..+||||.||+.++|+||+++|++||.|.+|.|++||.|+.++|||||.|.+.++|++|+++||+...+.|.
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 44455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccceeeccccccccc--cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 018554 86 SSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (354)
Q Consensus 86 ~~~l~v~~~~~~~~~~--~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 163 (354)
..+++|++++.++++. +++||||.|+..+||.||+++|++||.|++|.|++|..+.+||||||+|+++|.|..||++|
T Consensus 106 ~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 106 HHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred CcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhh
Confidence 9999999999998886 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCceeEEEEecCChHHHHHHHH-HHHhhhccCCCCCCC-CCCCccCCCCCCCCCCCCCCCCC
Q 018554 164 NGKHKMEGSSVPLVVKWADTEKERQARRA-QKAQSQANNLPNADS-QHPSLFGALPMGYAPPYNGYGYQ 230 (354)
Q Consensus 164 ~g~~~~~g~~~~l~v~~a~~~~~~~~~~~-~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~p~~~~~~~~ 230 (354)
||.+.++|++.+|.|+|||++++|..++. +..+.+...+.+... .....++...++|.+++.++.+.
T Consensus 186 ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~s 254 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQS 254 (510)
T ss_pred ccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhcccc
Confidence 99999999999999999999988876665 444444444444422 23666777777777666665543
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.1e-36 Score=282.21 Aligned_cols=174 Identities=28% Similarity=0.500 Sum_probs=157.1
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
..+....++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.++++|++||+.|++.. +.+ +
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~-l~g--r 177 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGIT-VRN--K 177 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCc-cCC--c
Confidence 3466688999999999999999999999999999999999999999999999999999999999999998866 444 7
Q ss_pred cceeeccccccc-cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 88 PLQVKYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 88 ~l~v~~~~~~~~-~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
.|+|.+++.... ...++|||+||++++|+++|+++|++||+|++++|++|+ ++++|+||||+|+++++|++||+.||+
T Consensus 178 ~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 178 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 888988765432 236789999999999999999999999999999999985 899999999999999999999999999
Q ss_pred CcccCCCceeEEEEecCChH
Q 018554 166 KHKMEGSSVPLVVKWADTEK 185 (354)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~~ 185 (354)
.. +++..+.|+|+||+...
T Consensus 258 ~~-~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 258 VI-PEGGSQPLTVRLAEEHG 276 (346)
T ss_pred Cc-cCCCceeEEEEECCccc
Confidence 76 67777899999998653
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.9e-33 Score=279.31 Aligned_cols=180 Identities=26% Similarity=0.422 Sum_probs=155.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC--CCCc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP--GASS 87 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~--g~~~ 87 (354)
.....++|||+||+.++|+++|+++|++||+|.++.+++|. +++++|||||+|.+.++|.+|++.+++..+ . ...+
T Consensus 174 ~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i-~~~~~g~ 251 (562)
T TIGR01628 174 PLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKI-GLAKEGK 251 (562)
T ss_pred cccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEe-cccccce
Confidence 44566889999999999999999999999999999999996 589999999999999999999999988774 3 0136
Q ss_pred cceeecccccccc-------------------ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEE
Q 018554 88 PLQVKYADGELER-------------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFL 148 (354)
Q Consensus 88 ~l~v~~~~~~~~~-------------------~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV 148 (354)
.+.|.++..+.++ ..++|||+||++++|+++|+++|+.||.|++|+|+.|.++.++|||||
T Consensus 252 ~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV 331 (562)
T TIGR01628 252 KLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFV 331 (562)
T ss_pred eeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEE
Confidence 6777766544332 246899999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCChHHHHHHHHHH
Q 018554 149 KYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQK 194 (354)
Q Consensus 149 ~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~ 194 (354)
+|++.++|.+|++.|||+. ++| ++|.|+||+.+..+......+
T Consensus 332 ~f~~~~~A~~A~~~~~g~~-~~g--k~l~V~~a~~k~~~~~~~~~~ 374 (562)
T TIGR01628 332 CFSNPEEANRAVTEMHGRM-LGG--KPLYVALAQRKEQRRAHLQDQ 374 (562)
T ss_pred EeCCHHHHHHHHHHhcCCe-eCC--ceeEEEeccCcHHHHHHHHHH
Confidence 9999999999999999976 666 689999999887776554443
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-35 Score=247.78 Aligned_cols=168 Identities=23% Similarity=0.512 Sum_probs=150.7
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
++.+......|||+.|..+++-|+|++.|.+||+|.+++|+||..|+++|||+||.|.+.++|++||..++|+. |.+
T Consensus 55 sk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW-lG~-- 131 (321)
T KOG0148|consen 55 SKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW-LGR-- 131 (321)
T ss_pred CCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee-ecc--
Confidence 33444557789999999999999999999999999999999999999999999999999999999999998865 555
Q ss_pred ccceeeccccccccc-----------------cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEE
Q 018554 87 SPLQVKYADGELERL-----------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLK 149 (354)
Q Consensus 87 ~~l~v~~~~~~~~~~-----------------~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~ 149 (354)
+.|+-.|+..+..+. .++|||||++.-+||++||+.|+.||.|.+|+|+++ +||+||+
T Consensus 132 R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVr 206 (321)
T KOG0148|consen 132 RTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVR 206 (321)
T ss_pred ceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEE
Confidence 788888886554332 789999999999999999999999999999999998 8999999
Q ss_pred eCCHHHHHHHHHHhCCCcccCCCceeEEEEecCChH
Q 018554 150 YETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185 (354)
Q Consensus 150 f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (354)
|++.|+|.+||..+|++. ++| -.|+|.|.++..
T Consensus 207 F~tkEaAahAIv~mNnte-i~G--~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 207 FETKEAAAHAIVQMNNTE-IGG--QLVRCSWGKEGD 239 (321)
T ss_pred ecchhhHHHHHHHhcCce-eCc--eEEEEeccccCC
Confidence 999999999999999998 666 589999997653
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.6e-33 Score=252.66 Aligned_cols=173 Identities=25% Similarity=0.474 Sum_probs=148.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....|.||||.||.|+.|+||+-+|++.|+|.+++||+|+.+|.+||||||+|.+.++|++||+.||+..+-.|+...+
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999887666633333
Q ss_pred eeeccc--------------------------------------------------------------------------
Q 018554 90 QVKYAD-------------------------------------------------------------------------- 95 (354)
Q Consensus 90 ~v~~~~-------------------------------------------------------------------------- 95 (354)
+++.++
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn 238 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN 238 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC
Confidence 333221
Q ss_pred --------cccccc------cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 018554 96 --------GELERL------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (354)
Q Consensus 96 --------~~~~~~------~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~ 161 (354)
++.+.. .+.|||+||..++|+|.|+++|++||.|++|+.++| ||||.|.++++|.+|++
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHH
Confidence 111110 457999999999999999999999999999999966 99999999999999999
Q ss_pred HhCCCcccCCCceeEEEEecCChHHHHHHHH
Q 018554 162 AINGKHKMEGSSVPLVVKWADTEKERQARRA 192 (354)
Q Consensus 162 ~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~ 192 (354)
.+||+. |+| ..|.|.+|++..+++..+.
T Consensus 312 ~~ngke-ldG--~~iEvtLAKP~~k~k~~r~ 339 (506)
T KOG0117|consen 312 ETNGKE-LDG--SPIEVTLAKPVDKKKKERK 339 (506)
T ss_pred HhcCce-ecC--ceEEEEecCChhhhccchh
Confidence 999998 788 5899999999877766653
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.3e-32 Score=259.74 Aligned_cols=169 Identities=27% Similarity=0.530 Sum_probs=154.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
+.++|||+|||.+++|++|+++|++||+|.+|+|++|+.+|+++|||||+|.+.++|++||+.|++.. +.+ +.|+|.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~-l~g--~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR-LQN--KTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE-ECC--eeEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999998866 555 788998
Q ss_pred cccccccc-ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccC
Q 018554 93 YADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (354)
Q Consensus 93 ~~~~~~~~-~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 170 (354)
++++.... ..++|||+||+.++++++|+++|+.||.|..++++.+. ++.++|||||+|++.++|++|++.|||.. +.
T Consensus 79 ~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~-~~ 157 (352)
T TIGR01661 79 YARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT-PS 157 (352)
T ss_pred eecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc-cC
Confidence 88765432 46789999999999999999999999999999999884 78889999999999999999999999976 77
Q ss_pred CCceeEEEEecCChH
Q 018554 171 GSSVPLVVKWADTEK 185 (354)
Q Consensus 171 g~~~~l~v~~a~~~~ 185 (354)
|+..+|.|+|++...
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 777899999997654
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=5.5e-32 Score=263.44 Aligned_cols=168 Identities=20% Similarity=0.343 Sum_probs=147.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....++||||||+++++|++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++|++.||+.. +.| +.|+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~G--R~Ik 180 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGG--RNIK 180 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eec--ceee
Confidence 3567899999999999999999999999999999999999999999999999999999999999998865 555 6677
Q ss_pred eecccccc------------ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHH
Q 018554 91 VKYADGEL------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQAL 157 (354)
Q Consensus 91 v~~~~~~~------------~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~ 157 (354)
|.++.... ....++|||+||+.++++++|+++|+.||.|++++|.+|. ++.+||||||+|++.++|.
T Consensus 181 V~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 181 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 76543211 1124789999999999999999999999999999999985 6789999999999999999
Q ss_pred HHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 158 AALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 158 ~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
+||+.||+.. ++| +.|+|.++...
T Consensus 261 kAI~amNg~e-lgG--r~LrV~kAi~p 284 (612)
T TIGR01645 261 EAIASMNLFD-LGG--QYLRVGKCVTP 284 (612)
T ss_pred HHHHHhCCCe-eCC--eEEEEEecCCC
Confidence 9999999986 666 68889888653
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=4.8e-32 Score=229.57 Aligned_cols=171 Identities=26% Similarity=0.521 Sum_probs=157.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.++..+.|.|.-||.++|+|||+.+|...|+|++|+++|||.||.+.||+||.|.++++|++||+.|||.++ ..+.|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL---Q~KTI 113 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---QNKTI 113 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee---ccceE
Confidence 356677899999999999999999999999999999999999999999999999999999999999999774 56899
Q ss_pred eeecccccccc-ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 018554 90 QVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH 167 (354)
Q Consensus 90 ~v~~~~~~~~~-~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 167 (354)
+|+|+++..+. ...+|||.+||..+|..||.++|++||.|..-+|+.|. ++.+||++||+|+.+++|++||+.|||..
T Consensus 114 KVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 114 KVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred EEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 99999886554 36799999999999999999999999999998998884 89999999999999999999999999975
Q ss_pred ccCCCceeEEEEecCCh
Q 018554 168 KMEGSSVPLVVKWADTE 184 (354)
Q Consensus 168 ~~~g~~~~l~v~~a~~~ 184 (354)
-.|+..+|.|+||...
T Consensus 194 -P~g~tepItVKFannP 209 (360)
T KOG0145|consen 194 -PSGCTEPITVKFANNP 209 (360)
T ss_pred -CCCCCCCeEEEecCCc
Confidence 7888899999999876
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=3.5e-31 Score=249.85 Aligned_cols=171 Identities=25% Similarity=0.447 Sum_probs=150.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....++|||+|||.++++++|+++|++||.|..++++.|..++.++|||||+|.+.++|++|++.||+.. +.+....+.
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~-~~g~~~~i~ 164 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT-PSGCTEPIT 164 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc-cCCCceeEE
Confidence 4467799999999999999999999999999999999999889999999999999999999999999865 556566777
Q ss_pred eeccccccc-----------------------------------------------------------------------
Q 018554 91 VKYADGELE----------------------------------------------------------------------- 99 (354)
Q Consensus 91 v~~~~~~~~----------------------------------------------------------------------- 99 (354)
+.+++....
T Consensus 165 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR01661 165 VKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRA 244 (352)
T ss_pred EEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccC
Confidence 777642220
Q ss_pred ----------------------cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHH
Q 018554 100 ----------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQA 156 (354)
Q Consensus 100 ----------------------~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A 156 (354)
....+|||+||++++++++|+++|++||.|++++|++|. ++.+||||||+|.+.++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A 324 (352)
T TIGR01661 245 SPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEA 324 (352)
T ss_pred CCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHH
Confidence 001259999999999999999999999999999999995 899999999999999999
Q ss_pred HHHHHHhCCCcccCCCceeEEEEecCChH
Q 018554 157 LAALEAINGKHKMEGSSVPLVVKWADTEK 185 (354)
Q Consensus 157 ~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (354)
.+|++.|||.. ++| +.|+|.|+..+.
T Consensus 325 ~~Ai~~lnG~~-~~g--r~i~V~~~~~~~ 350 (352)
T TIGR01661 325 AMAILSLNGYT-LGN--RVLQVSFKTNKA 350 (352)
T ss_pred HHHHHHhCCCE-ECC--eEEEEEEccCCC
Confidence 99999999987 666 789999987653
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.98 E-value=6.1e-30 Score=248.88 Aligned_cols=165 Identities=26% Similarity=0.490 Sum_probs=136.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC----
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS---- 86 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~---- 86 (354)
....++|||+|||++++|++|+++|++||.|.+|+|++| .+|++||||||+|.+.++|++||+.||+..+..++.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445699999999999999999999999999999999999 689999999999999999999999998755332211
Q ss_pred ------------------------------------------------------------------------------cc
Q 018554 87 ------------------------------------------------------------------------------SP 88 (354)
Q Consensus 87 ------------------------------------------------------------------------------~~ 88 (354)
+.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 01
Q ss_pred ceeeccccccc------cccceEEEecCCCCCCHHHHHHhhccC--CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 018554 89 LQVKYADGELE------RLEHKLFIGMLPKNVSEAEVSALFSIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 89 l~v~~~~~~~~------~~~~~l~V~~l~~~~t~~~l~~~F~~~--G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai 160 (354)
|.|.|+..+.+ ...++|||+||++++|+|+|+++|++| |+|++|+++ ++||||+|++.++|++|+
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHH
Confidence 11222221111 013579999999999999999999999 999999987 459999999999999999
Q ss_pred HHhCCCcccCCCceeEEEEecCChHH
Q 018554 161 EAINGKHKMEGSSVPLVVKWADTEKE 186 (354)
Q Consensus 161 ~~l~g~~~~~g~~~~l~v~~a~~~~~ 186 (354)
++||+.. ++| +.|+|+||++...
T Consensus 287 ~~lnG~~-i~G--r~I~V~~Akp~~~ 309 (578)
T TIGR01648 287 DELNGKE-LEG--SEIEVTLAKPVDK 309 (578)
T ss_pred HHhCCCE-ECC--EEEEEEEccCCCc
Confidence 9999987 666 7899999987543
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=6.3e-30 Score=255.36 Aligned_cols=160 Identities=27% Similarity=0.459 Sum_probs=142.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeeccc
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 95 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~~ 95 (354)
+|||||||.++||++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++|++.+++.. +.+ +.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~-i~g--k~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKR-LGG--KPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--eeEEeeccc
Confidence 79999999999999999999999999999999999999999999999999999999999998765 444 778888875
Q ss_pred cccc---cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCC
Q 018554 96 GELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (354)
Q Consensus 96 ~~~~---~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~ 172 (354)
.+.. ....+|||+||+.++++++|+++|+.||.|++|+|..+.+++++|||||+|++.++|.+|++.|||.. +++
T Consensus 79 ~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~-~~~- 156 (562)
T TIGR01628 79 RDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGML-LND- 156 (562)
T ss_pred ccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccE-ecC-
Confidence 4322 22568999999999999999999999999999999999999999999999999999999999999976 555
Q ss_pred ceeEEEEec
Q 018554 173 SVPLVVKWA 181 (354)
Q Consensus 173 ~~~l~v~~a 181 (354)
+.|.|...
T Consensus 157 -~~i~v~~~ 164 (562)
T TIGR01628 157 -KEVYVGRF 164 (562)
T ss_pred -ceEEEecc
Confidence 45665443
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.9e-29 Score=246.13 Aligned_cols=167 Identities=31% Similarity=0.496 Sum_probs=145.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..+.++|||+|||.++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+ |++.. +.+ +.|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~-~~g--~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM-LLG--RPII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE-ECC--eeeE
Confidence 3457899999999999999999999999999999999999999999999999999999999996 66765 444 6666
Q ss_pred eecccccccc-------------ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHH
Q 018554 91 VKYADGELER-------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQA 156 (354)
Q Consensus 91 v~~~~~~~~~-------------~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A 156 (354)
|.++..+... ..++|||+||+..+|+++|+++|+.||.|+.|.|+++. ++.++|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 6654322111 14789999999999999999999999999999999985 678999999999999999
Q ss_pred HHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 157 LAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 157 ~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
.+|++.|||.. +.| +.|.|.|+...
T Consensus 242 ~~A~~~l~g~~-i~g--~~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFE-LAG--RPIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcE-ECC--EEEEEEEccCC
Confidence 99999999966 555 78999998743
No 13
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.3e-28 Score=209.54 Aligned_cols=177 Identities=32% Similarity=0.525 Sum_probs=162.7
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
.+++.+..+.++||||-|.+.-+|||++.+|..||+|++|.+.+..+ |.+||||||+|.+..+|..||+.||+...+.|
T Consensus 10 adsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG 88 (371)
T KOG0146|consen 10 ADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPG 88 (371)
T ss_pred cccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence 34455556889999999999999999999999999999999999886 89999999999999999999999999999999
Q ss_pred CCccceeeccccccccc---------------------------------------------------------------
Q 018554 85 ASSPLQVKYADGELERL--------------------------------------------------------------- 101 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~~~--------------------------------------------------------------- 101 (354)
....|-|++++.++++.
T Consensus 89 ASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA 168 (371)
T KOG0146|consen 89 ASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAA 168 (371)
T ss_pred CccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHH
Confidence 99999999999988875
Q ss_pred --------------------------------------------------------------------------------
Q 018554 102 -------------------------------------------------------------------------------- 101 (354)
Q Consensus 102 -------------------------------------------------------------------------------- 101 (354)
T Consensus 169 ~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~ 248 (371)
T KOG0146|consen 169 LNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYA 248 (371)
T ss_pred HhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhh
Confidence
Q ss_pred ------------------------------------cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcce
Q 018554 102 ------------------------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKG 144 (354)
Q Consensus 102 ------------------------------------~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g 144 (354)
.|+|||-.||.+..+.||.+.|-.||.|.+.+++-|+ ++.||+
T Consensus 249 g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKC 328 (371)
T KOG0146|consen 249 GVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKC 328 (371)
T ss_pred hHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccc
Confidence 6899999999999999999999999999999999995 889999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCChH
Q 018554 145 CAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185 (354)
Q Consensus 145 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (354)
|+||.|++..+|+.||.++||..+ ..++|+|.+.+++.
T Consensus 329 FGFVSfDNp~SaQaAIqAMNGFQI---GMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 329 FGFVSFDNPASAQAAIQAMNGFQI---GMKRLKVQLKRPKD 366 (371)
T ss_pred eeeEecCCchhHHHHHHHhcchhh---hhhhhhhhhcCccc
Confidence 999999999999999999999875 45778888766654
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=3.5e-27 Score=230.40 Aligned_cols=161 Identities=18% Similarity=0.283 Sum_probs=135.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC-CccCCCCCcccee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN-KKTLPGASSPLQV 91 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~-~~~~~g~~~~l~v 91 (354)
++++|||+|||++++|++|+++|++||.|.+|.|+++ +|||||+|.+.++|++||+.++. ...+.+ +.|+|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g--~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRG--QPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcC--eEEEE
Confidence 4789999999999999999999999999999999864 36999999999999999997632 233555 78888
Q ss_pred ecccccc-cc------------ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHH
Q 018554 92 KYADGEL-ER------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158 (354)
Q Consensus 92 ~~~~~~~-~~------------~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~ 158 (354)
.|+..+. .+ ...+|||+||++++|+++|+++|+.||+|++|.|+++.. +++|||+|++.++|.+
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQH 149 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHH
Confidence 8875332 11 123789999999999999999999999999999988643 4689999999999999
Q ss_pred HHHHhCCCcccCCCceeEEEEecCChH
Q 018554 159 ALEAINGKHKMEGSSVPLVVKWADTEK 185 (354)
Q Consensus 159 Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (354)
|++.|||..+.++ .+.|+|.|++...
T Consensus 150 A~~~Lng~~i~~~-~~~l~v~~sk~~~ 175 (481)
T TIGR01649 150 AKAALNGADIYNG-CCTLKIEYAKPTR 175 (481)
T ss_pred HHHHhcCCcccCC-ceEEEEEEecCCC
Confidence 9999999985554 4789999987654
No 15
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=5.1e-28 Score=195.18 Aligned_cols=169 Identities=27% Similarity=0.436 Sum_probs=147.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
+.....|||||||+..++++.|.++|-+.|+|.++.+.+|+.|...+|||||+|.++|+|+.|++.|+.-+ +-| ++|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk-LYg--rpI 81 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK-LYG--RPI 81 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH-hcC--cee
Confidence 34567899999999999999999999999999999999999999999999999999999999999998433 555 788
Q ss_pred eeeccc--cccccccceEEEecCCCCCCHHHHHHhhccCCCeeE-EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 90 QVKYAD--GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGS-QQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 90 ~v~~~~--~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~-i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
+|..+. .+......+|||+||..+++|..|.+.|+.||.+.. -+|+++. ++.+++|+||.|++.+.+.+|++.+||
T Consensus 82 rv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 82 RVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred EEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 887765 233344689999999999999999999999998655 5888884 689999999999999999999999999
Q ss_pred CcccCCCceeEEEEecCCh
Q 018554 166 KHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~ 184 (354)
..+ ++++++|+++..+
T Consensus 162 q~l---~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 162 QYL---CNRPITVSYAFKK 177 (203)
T ss_pred chh---cCCceEEEEEEec
Confidence 764 4478888888544
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=195.49 Aligned_cols=174 Identities=25% Similarity=0.460 Sum_probs=154.2
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
+...+..+...|||.+||+.+|..||+.+|+.||.|..-+|..|..||.+||.+||.|+..++|+.||+.|||.. -.+.
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~-P~g~ 197 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK-PSGC 197 (360)
T ss_pred cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC-CCCC
Confidence 455667788899999999999999999999999999999999999999999999999999999999999999876 6677
Q ss_pred Cccceeeccccccccc----------------------------------------------------------------
Q 018554 86 SSPLQVKYADGELERL---------------------------------------------------------------- 101 (354)
Q Consensus 86 ~~~l~v~~~~~~~~~~---------------------------------------------------------------- 101 (354)
..+|.|+|+.......
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 8899999985432221
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.-+|||-||..+.+|..|+++|..||.|..|+|++| .+.+.|||+||.+.+-++|..||..|||.. +.+ +.|.|+|
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~-lg~--rvLQVsF 354 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR-LGD--RVLQVSF 354 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc-ccc--eEEEEEE
Confidence 237999999999999999999999999999999999 468999999999999999999999999987 544 6788887
Q ss_pred cCC
Q 018554 181 ADT 183 (354)
Q Consensus 181 a~~ 183 (354)
...
T Consensus 355 Ktn 357 (360)
T KOG0145|consen 355 KTN 357 (360)
T ss_pred ecC
Confidence 543
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=6.2e-26 Score=221.70 Aligned_cols=162 Identities=22% Similarity=0.350 Sum_probs=136.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 12 EERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 12 ~~~~~lfVg~Lp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
...++|||+||++ ++|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++||+.||+.. +.| +.|+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~-l~g--~~l~ 344 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVK-LFG--KPLR 344 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCE-ECC--ceEE
Confidence 4678999999997 69999999999999999999999974 5899999999999999999999876 555 6777
Q ss_pred eeccccccc--------------------------------------cccceEEEecCCCCCCHHHHHHhhccCCC--ee
Q 018554 91 VKYADGELE--------------------------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGT--IK 130 (354)
Q Consensus 91 v~~~~~~~~--------------------------------------~~~~~l~V~~l~~~~t~~~l~~~F~~~G~--v~ 130 (354)
|.+++.+.. ...++|||+|||.++|+++|+++|+.||. |+
T Consensus 345 v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~ 424 (481)
T TIGR01649 345 VCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVK 424 (481)
T ss_pred EEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccce
Confidence 776532210 11358999999999999999999999998 88
Q ss_pred EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc----eeEEEEecCC
Q 018554 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS----VPLVVKWADT 183 (354)
Q Consensus 131 ~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~----~~l~v~~a~~ 183 (354)
.++++.+.++ .+++|||+|++.++|.+|+..||+.. ++++. ..|+|+|+++
T Consensus 425 ~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~-l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 425 KFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQ-LNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred EEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCc-cCCCCCCccceEEEEeccC
Confidence 8988765544 47899999999999999999999987 66542 2478888765
No 18
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8.1e-27 Score=210.61 Aligned_cols=173 Identities=30% Similarity=0.508 Sum_probs=157.4
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
.++++-.++++||||-|++.+||.|++++|++||.|++|.|++|.. +.+||||||+|.+.|.|..||++||+...+.|.
T Consensus 116 ~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGc 194 (510)
T KOG0144|consen 116 GERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGC 194 (510)
T ss_pred hhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccC
Confidence 3444456789999999999999999999999999999999999987 899999999999999999999999999999999
Q ss_pred Cccceeeccccccccc----------------------------------------------------------------
Q 018554 86 SSPLQVKYADGELERL---------------------------------------------------------------- 101 (354)
Q Consensus 86 ~~~l~v~~~~~~~~~~---------------------------------------------------------------- 101 (354)
..+|-|+|++.++++.
T Consensus 195 s~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~ 274 (510)
T KOG0144|consen 195 SQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQL 274 (510)
T ss_pred CCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHH
Confidence 9999999999887765
Q ss_pred --------------------------------------------------------------------------------
Q 018554 102 -------------------------------------------------------------------------------- 101 (354)
Q Consensus 102 -------------------------------------------------------------------------------- 101 (354)
T Consensus 275 qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a 354 (510)
T KOG0144|consen 275 QQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGA 354 (510)
T ss_pred HHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccc
Confidence
Q ss_pred ---------------------------------------------------------------------cceEEEecCCC
Q 018554 102 ---------------------------------------------------------------------EHKLFIGMLPK 112 (354)
Q Consensus 102 ---------------------------------------------------------------------~~~l~V~~l~~ 112 (354)
..+|||.+||.
T Consensus 355 ~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPq 434 (510)
T KOG0144|consen 355 GTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQ 434 (510)
T ss_pred cccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCch
Confidence 45899999999
Q ss_pred CCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 113 NVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 113 ~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
+.-+.||-..|..||.|+..+++-|+ ++.+++|+||.|++..+|..||..+||.. +.. ++++|.+..
T Consensus 435 efgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQ-ig~--KrlkVQlk~ 502 (510)
T KOG0144|consen 435 EFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQ-IGS--KRLKVQLKR 502 (510)
T ss_pred hhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchh-hcc--ccceEEeee
Confidence 99999999999999999999999884 89999999999999999999999999987 444 557776543
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=207.94 Aligned_cols=169 Identities=28% Similarity=0.446 Sum_probs=144.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
+.-+|+|+||||.|.+++|+.+|+.||.|.+|.|.+.+.++.+ |||||.|.+..+|.+|++.+|+.. +.| +++-|+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~-i~g--R~VAVD 191 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNK-IDG--RPVAVD 191 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCce-ecC--ceeEEe
Confidence 3778999999999999999999999999999999988875544 999999999999999999998866 555 888888
Q ss_pred ccccccccc-----------------------------------------------------------------------
Q 018554 93 YADGELERL----------------------------------------------------------------------- 101 (354)
Q Consensus 93 ~~~~~~~~~----------------------------------------------------------------------- 101 (354)
|+..+..-.
T Consensus 192 WAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S 271 (678)
T KOG0127|consen 192 WAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESS 271 (678)
T ss_pred eecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccc
Confidence 873211000
Q ss_pred --------------------cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHH
Q 018554 102 --------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 102 --------------------~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai 160 (354)
..+|||+||++++|+++|.++|++||+|..+.|+.+ .++.++|+|||.|.+..+|..||
T Consensus 272 ~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci 351 (678)
T KOG0127|consen 272 GKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCI 351 (678)
T ss_pred ccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHH
Confidence 358999999999999999999999999999999998 58999999999999999999999
Q ss_pred HHh-----CCCcccCCCceeEEEEecCChHHH
Q 018554 161 EAI-----NGKHKMEGSSVPLVVKWADTEKER 187 (354)
Q Consensus 161 ~~l-----~g~~~~~g~~~~l~v~~a~~~~~~ 187 (354)
+.. .|..+|+| +.|.|..|-.+++.
T Consensus 352 ~~Aspa~e~g~~ll~G--R~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 352 EAASPASEDGSVLLDG--RLLKVTLAVTRKEA 381 (678)
T ss_pred HhcCccCCCceEEEec--cEEeeeeccchHHH
Confidence 887 34466787 67888888766543
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=199.49 Aligned_cols=147 Identities=26% Similarity=0.533 Sum_probs=132.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
.+|||||||.++++.+|+.+|++||+|.+|.|+++ ||||..+|...|+.||..||+-+ |.| ..|+|.-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYt-Lhg--~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYT-LHG--VNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccce-ecc--eEEEEEec
Confidence 57999999999999999999999999999999986 99999999999999999998876 555 77888877
Q ss_pred ccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCce
Q 018554 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (354)
Q Consensus 95 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~ 174 (354)
+.+ .+.+.+|+|+||...++.+||++.|++||.|.+++|++ +|+||.|+..++|..|++.||+.. +.| +
T Consensus 72 ksK-sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~-~~g--k 140 (346)
T KOG0109|consen 72 KSK-SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTE-FQG--K 140 (346)
T ss_pred ccc-CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccc-ccc--c
Confidence 766 55678999999999999999999999999999999994 599999999999999999999987 677 5
Q ss_pred eEEEEecCC
Q 018554 175 PLVVKWADT 183 (354)
Q Consensus 175 ~l~v~~a~~ 183 (354)
+++|.+..+
T Consensus 141 ~m~vq~sts 149 (346)
T KOG0109|consen 141 RMHVQLSTS 149 (346)
T ss_pred eeeeeeecc
Confidence 677766544
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=2.5e-25 Score=220.05 Aligned_cols=167 Identities=23% Similarity=0.362 Sum_probs=138.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
...++|||+|||.++++++|+++|+.||.|..+.|++|..||.++|||||+|.+.++|..||+.|++.. +.+ +.|.|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~-~~~--~~l~v 369 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD-TGD--NKLHV 369 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999998877 444 56666
Q ss_pred ecccccc-----------------------------ccccceEEEecCCCC--C--------CHHHHHHhhccCCCeeEE
Q 018554 92 KYADGEL-----------------------------ERLEHKLFIGMLPKN--V--------SEAEVSALFSIYGTIKDL 132 (354)
Q Consensus 92 ~~~~~~~-----------------------------~~~~~~l~V~~l~~~--~--------t~~~l~~~F~~~G~v~~i 132 (354)
.++.... ....++|+|.||... + ..++|+++|++||.|++|
T Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v 449 (509)
T TIGR01642 370 QRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINI 449 (509)
T ss_pred EECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEE
Confidence 6652110 012467899888531 1 236799999999999999
Q ss_pred EEeeCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 133 QILRGS----QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 133 ~i~~~~----~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
.|+++. .+..+|++||+|++.++|++|+++|||.. ++| +.|.|.|.+..
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~-~~g--r~v~~~~~~~~ 502 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRK-FND--RVVVAAFYGED 502 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEEEeCHH
Confidence 998762 24557999999999999999999999987 666 68899987654
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=6.4e-25 Score=217.13 Aligned_cols=162 Identities=23% Similarity=0.422 Sum_probs=131.4
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEF------------ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~------------G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
......++|||||||.++|+++|+++|..+ +.|..+.+ .+.+|||||+|.+.++|.+|| +|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 345678899999999999999999999985 23333433 456789999999999999999 58
Q ss_pred cCCccCCCCCccceeecccccc------------------------------ccccceEEEecCCCCCCHHHHHHhhccC
Q 018554 77 HNKKTLPGASSPLQVKYADGEL------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIY 126 (354)
Q Consensus 77 ~~~~~~~g~~~~l~v~~~~~~~------------------------------~~~~~~l~V~~l~~~~t~~~l~~~F~~~ 126 (354)
++.. +.+ ..|+|....... ....++|||+||+..+|+++|+++|+.|
T Consensus 243 ~g~~-~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 319 (509)
T TIGR01642 243 DSII-YSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF 319 (509)
T ss_pred CCeE-eeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 7754 444 566665322110 1124689999999999999999999999
Q ss_pred CCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCC
Q 018554 127 GTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (354)
Q Consensus 127 G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 183 (354)
|.|+.+.|+++ .++.++|||||+|.+.++|.+||+.|||.. +.| ..|.|.++..
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~-~~~--~~l~v~~a~~ 374 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD-TGD--NKLHVQRACV 374 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEEECcc
Confidence 99999999998 578999999999999999999999999987 555 5788888853
No 23
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.93 E-value=1.1e-25 Score=202.84 Aligned_cols=170 Identities=25% Similarity=0.427 Sum_probs=142.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
+.++||||+|+|++++|.|+++|+.||+|.+|.+++|+.|+++|||+||+|++.+.+.++|.. ..+.++++....+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~--~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA--RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc--cccccCCccccceec
Confidence 899999999999999999999999999999999999999999999999999999999999877 335566644444444
Q ss_pred ccccccccc-----cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 018554 93 YADGELERL-----EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166 (354)
Q Consensus 93 ~~~~~~~~~-----~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 166 (354)
.++.+..+. ..+|||++|+.++++++++++|++||.|.++.++.| .+...++|+||.|++++++.+++.. ..
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~--~f 160 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ--KF 160 (311)
T ss_pred cCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc--ce
Confidence 444322222 458999999999999999999999999999999998 5788899999999999999998753 22
Q ss_pred cccCCCceeEEEEecCChHHHH
Q 018554 167 HKMEGSSVPLVVKWADTEKERQ 188 (354)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~~ 188 (354)
+.+.+ +.+.|+.|.++....
T Consensus 161 ~~~~g--k~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 161 HDFNG--KKVEVKRAIPKEVMQ 180 (311)
T ss_pred eeecC--ceeeEeeccchhhcc
Confidence 33555 678899888775544
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=9.5e-25 Score=202.36 Aligned_cols=164 Identities=26% Similarity=0.457 Sum_probs=145.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
.||||++||++++.++|.++|+.+|.|..|.++.++.++++|||+||.|.-.+++..|+..+++.. +.| +.|+|..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k-f~G--r~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK-FEG--RILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc-ccc--eecccccc
Confidence 899999999999999999999999999999999999999999999999999999999999987765 555 66666665
Q ss_pred ccccccc---------------------------cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEE
Q 018554 95 DGELERL---------------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAF 147 (354)
Q Consensus 95 ~~~~~~~---------------------------~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~af 147 (354)
..+.... .-+|.|+||||.+.+.+|+.+|+.||.|.+|.|.+...+.-.||||
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaF 162 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAF 162 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEE
Confidence 3221110 3479999999999999999999999999999999888777789999
Q ss_pred EEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 148 LKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 148 V~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
|.|....+|.+|++.+|+.. ++| ++|-|.||-.+
T Consensus 163 V~fk~~~dA~~Al~~~N~~~-i~g--R~VAVDWAV~K 196 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNK-IDG--RPVAVDWAVDK 196 (678)
T ss_pred EEEeeHHHHHHHHHhccCce-ecC--ceeEEeeeccc
Confidence 99999999999999999987 666 78999999554
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=3.2e-23 Score=202.32 Aligned_cols=163 Identities=25% Similarity=0.426 Sum_probs=136.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
..++|||+|||.++++++|+++|+.||.|..|.|++|..+|+++|||||+|.+.++|.+|++.|++.. +.+ +.|.|.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~-i~g--~~i~v~ 261 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFE-LAG--RPIKVG 261 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcE-ECC--EEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999855 444 677777
Q ss_pred ccccc---------------------------------------------------------------------------
Q 018554 93 YADGE--------------------------------------------------------------------------- 97 (354)
Q Consensus 93 ~~~~~--------------------------------------------------------------------------- 97 (354)
|+...
T Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (457)
T TIGR01622 262 YAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYAT 341 (457)
T ss_pred EccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccc
Confidence 73210
Q ss_pred ----------------cccccceEEEecCCCCCC----------HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeC
Q 018554 98 ----------------LERLEHKLFIGMLPKNVS----------EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 151 (354)
Q Consensus 98 ----------------~~~~~~~l~V~~l~~~~t----------~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~ 151 (354)
......+|+|.||-...+ .+||++.|++||.|+.|.|... ...|++||+|+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~ 418 (457)
T TIGR01622 342 GALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFS 418 (457)
T ss_pred cccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEEC
Confidence 001135688888854433 3689999999999999999743 23799999999
Q ss_pred CHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 152 TKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 152 ~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
+.++|.+|++.|||.. ++| +.|.|.+....
T Consensus 419 ~~e~A~~A~~~lnGr~-f~g--r~i~~~~~~~~ 448 (457)
T TIGR01622 419 SVDAALAAFQALNGRY-FGG--KMITAAFVVND 448 (457)
T ss_pred CHHHHHHHHHHhcCcc-cCC--eEEEEEEEcHH
Confidence 9999999999999987 777 68888887654
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.7e-23 Score=192.37 Aligned_cols=158 Identities=27% Similarity=0.468 Sum_probs=141.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
..|||| +++||+.|.++|+.+|+|.+|+|.+|. | +.|||||.|.+.++|++||+++|... +.| +.+++-|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~-~~~--~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDV-LKG--KPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcc-cCC--cEEEeehh
Confidence 468999 999999999999999999999999999 7 99999999999999999999997644 555 88888888
Q ss_pred ccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCce
Q 018554 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (354)
Q Consensus 95 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~ 174 (354)
..+... |||.||+.++|..+|.+.|+.||+|.+|++..+.+| ++|| ||+|+++++|.+|++.+||.. +.+ .
T Consensus 73 ~rd~~~----~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~l-l~~--k 143 (369)
T KOG0123|consen 73 QRDPSL----VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGML-LNG--K 143 (369)
T ss_pred ccCCce----eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcc-cCC--C
Confidence 765443 999999999999999999999999999999999888 8999 999999999999999999976 555 6
Q ss_pred eEEEEecCChHHHHHH
Q 018554 175 PLVVKWADTEKERQAR 190 (354)
Q Consensus 175 ~l~v~~a~~~~~~~~~ 190 (354)
.|.|.....+.++...
T Consensus 144 ki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 144 KIYVGLFERKEEREAP 159 (369)
T ss_pred eeEEeeccchhhhccc
Confidence 7888888777766533
No 27
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.4e-23 Score=184.45 Aligned_cols=162 Identities=20% Similarity=0.370 Sum_probs=140.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeec
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~ 93 (354)
-|+||||.|.+++.|+.|+..|..||+|++|.+-+|..|++++|||||+|+-.|.|..|++.+|+.. +.| +.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m-lGG--RNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGG--RNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccc-ccC--ccccccC
Confidence 4899999999999999999999999999999999999999999999999999999999999998754 666 6777765
Q ss_pred cccc------------cccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHH
Q 018554 94 ADGE------------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 94 ~~~~------------~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai 160 (354)
...- ..+.-++|||..+..+++|+||+.+|+.||+|.+|++-++. ...+|||+||+|.+..+..+||
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 4321 11225689999999999999999999999999999999995 5678999999999999999999
Q ss_pred HHhCCCcccCCCceeEEEEec
Q 018554 161 EAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 161 ~~l~g~~~~~g~~~~l~v~~a 181 (354)
..+|=.. ++|. -|+|-.+
T Consensus 270 asMNlFD-LGGQ--yLRVGk~ 287 (544)
T KOG0124|consen 270 ASMNLFD-LGGQ--YLRVGKC 287 (544)
T ss_pred hhcchhh-cccc--eEecccc
Confidence 9998765 6664 4555443
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=7.4e-21 Score=185.85 Aligned_cols=79 Identities=19% Similarity=0.340 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
...++|||+||+.++++++|+++|+.||+|.+|+|++|+.++++||||||+|.+.++|.+||+.+|+.. +.| +.|+|
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~e-lgG--r~LrV 278 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD-LGG--QYLRV 278 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCe-eCC--eEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999998765 344 44444
Q ss_pred ec
Q 018554 92 KY 93 (354)
Q Consensus 92 ~~ 93 (354)
.+
T Consensus 279 ~k 280 (612)
T TIGR01645 279 GK 280 (612)
T ss_pred Ee
Confidence 43
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.2e-21 Score=167.46 Aligned_cols=141 Identities=23% Similarity=0.475 Sum_probs=113.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
++++.+|||||||+.++||+-|..||.+.|.|.+|+|+.|-. .+..|..- +
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~----------------~v~wa~~p--------~----- 52 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL----------------KVNWATAP--------G----- 52 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh----------------ccccccCc--------c-----
Confidence 467889999999999999999999999999999999988710 00000000 0
Q ss_pred eeeccccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 018554 90 QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (354)
Q Consensus 90 ~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 168 (354)
..++.. .+.---+||+.|...++.|+||+.|..||+|.+++|++| .++++|||+||-|..+++|+.||..|||..
T Consensus 53 --nQsk~t-~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW- 128 (321)
T KOG0148|consen 53 --NQSKPT-SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW- 128 (321)
T ss_pred --cCCCCc-cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee-
Confidence 000000 011245899999999999999999999999999999999 699999999999999999999999999987
Q ss_pred cCCCceeEEEEecCChH
Q 018554 169 MEGSSVPLVVKWADTEK 185 (354)
Q Consensus 169 ~~g~~~~l~v~~a~~~~ 185 (354)
|.+ +.|+-.||..+.
T Consensus 129 lG~--R~IRTNWATRKp 143 (321)
T KOG0148|consen 129 LGR--RTIRTNWATRKP 143 (321)
T ss_pred ecc--ceeeccccccCc
Confidence 444 789999997665
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=185.67 Aligned_cols=168 Identities=25% Similarity=0.424 Sum_probs=141.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR---ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg---~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
..++|||.||.++++.++|...|...|.|.+|.|.+.++.. .|.|||||+|.+.++|..|++.|++.. +.| ..|
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv-ldG--H~l 590 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV-LDG--HKL 590 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce-ecC--ceE
Confidence 34449999999999999999999999999999887765422 356999999999999999999998765 777 556
Q ss_pred eeeccc--------cccc--cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHH
Q 018554 90 QVKYAD--------GELE--RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALA 158 (354)
Q Consensus 90 ~v~~~~--------~~~~--~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~ 158 (354)
.++++. .+.. ....+|+|.|||...+..+|+++|..||.|.+|+|... ..+.+||||||+|-+..+|..
T Consensus 591 ~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 591 ELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred EEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 665554 1111 11458999999999999999999999999999999987 456679999999999999999
Q ss_pred HHHHhCCCcccCCCceeEEEEecCChHH
Q 018554 159 ALEAINGKHKMEGSSVPLVVKWADTEKE 186 (354)
Q Consensus 159 Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 186 (354)
|+++|..+++ -| ++|++.||+....
T Consensus 671 A~~al~STHl-yG--RrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 671 AFDALGSTHL-YG--RRLVLEWAKSDNT 695 (725)
T ss_pred HHHhhcccce-ec--hhhheehhccchH
Confidence 9999998885 44 6899999987654
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=9.1e-21 Score=177.05 Aligned_cols=166 Identities=28% Similarity=0.451 Sum_probs=141.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeec
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~ 93 (354)
...|||.||+.++|..+|.++|+.||.|.+|+|+.|.. | ++|| ||+|+++++|.+|++.+||.. +.+ +.+.|..
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l-l~~--kki~vg~ 149 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML-LNG--KKIYVGL 149 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc-cCC--CeeEEee
Confidence 33399999999999999999999999999999999986 5 9999 999999999999999998855 444 5666655
Q ss_pred ccccccc---------ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018554 94 ADGELER---------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (354)
Q Consensus 94 ~~~~~~~---------~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 164 (354)
...+.++ ...+++|.++..++++++|.++|..+|.|..+.++.+..+.+++|+||.|++.++|..|++.|+
T Consensus 150 ~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 150 FERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred ccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 4433332 2467899999999999999999999999999999999988899999999999999999999999
Q ss_pred CCcccCCCceeEEEEecCChHHHH
Q 018554 165 GKHKMEGSSVPLVVKWADTEKERQ 188 (354)
Q Consensus 165 g~~~~~g~~~~l~v~~a~~~~~~~ 188 (354)
+.. +++ ..+.|..+..+.++.
T Consensus 230 ~~~-~~~--~~~~V~~aqkk~e~~ 250 (369)
T KOG0123|consen 230 GKI-FGD--KELYVGRAQKKSERE 250 (369)
T ss_pred CCc-CCc--cceeecccccchhhH
Confidence 976 443 567777766644443
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=1.5e-21 Score=182.15 Aligned_cols=165 Identities=27% Similarity=0.461 Sum_probs=141.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
+..+.++||+-.|....+..||.+||+.+|+|.+|.+|.|+.+++++|.|||+|.|.+++..|| .|.|+.+ .| .++
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl-lg--~pv 250 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL-LG--VPV 250 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc-cC--cee
Confidence 4567889999999999999999999999999999999999999999999999999999999999 6767764 34 677
Q ss_pred eeeccccccccc---------------cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCH
Q 018554 90 QVKYADGELERL---------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 153 (354)
Q Consensus 90 ~v~~~~~~~~~~---------------~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~ 153 (354)
.|+....++... -.+||||||-.++++++|+.+|+.||.|+.|.+.+|. +|.++||+||+|.+.
T Consensus 251 ~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 251 IVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred EecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 776543332221 2239999999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 154 EQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 154 ~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
++|.+|++.|||. .+-|. .|+|..-
T Consensus 331 ~~ar~a~e~lngf-elAGr--~ikV~~v 355 (549)
T KOG0147|consen 331 EDARKALEQLNGF-ELAGR--LIKVSVV 355 (549)
T ss_pred HHHHHHHHHhccc-eecCc--eEEEEEe
Confidence 9999999999994 46664 5555543
No 33
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.7e-19 Score=152.86 Aligned_cols=117 Identities=45% Similarity=0.724 Sum_probs=107.4
Q ss_pred Cccceeecccccccc-ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018554 86 SSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (354)
Q Consensus 86 ~~~l~v~~~~~~~~~-~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 164 (354)
.++|+|+.++.+.+. +.++||||.|...-.|||++.+|..||.|+++.+++..++.+|||+||+|.+..+|..||..|+
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhc
Confidence 478889888877655 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCceeEEEEecCChHHHHHHHHHHHhhhccCC
Q 018554 165 GKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNL 202 (354)
Q Consensus 165 g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~ 202 (354)
|...+-|....|.|+|||++++|.-+++++...+...+
T Consensus 82 gSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~ 119 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMF 119 (371)
T ss_pred ccccCCCCccceEEEeccchHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999998877666544
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2e-18 Score=139.90 Aligned_cols=145 Identities=18% Similarity=0.348 Sum_probs=123.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
...+++|||||||.++-|.||.++|.+||.|.+|.|..-+ ..-+||||+|+|..+|+.||..-++-. +.+ ..|+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYd-ydg--~rLR 76 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYD-YDG--CRLR 76 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccc-cCc--ceEE
Confidence 3568999999999999999999999999999999886543 245799999999999999998776655 444 8899
Q ss_pred eecccccc---------------------------ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcc
Q 018554 91 VKYADGEL---------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSK 143 (354)
Q Consensus 91 v~~~~~~~---------------------------~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~ 143 (354)
|.++..-. .+.+.+|.|.+||.+-+++||+++..+-|.|....+.+|
T Consensus 77 VEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------ 150 (241)
T KOG0105|consen 77 VEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------ 150 (241)
T ss_pred EEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------
Confidence 98875331 112568999999999999999999999999999999986
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCc
Q 018554 144 GCAFLKYETKEQALAALEAINGKH 167 (354)
Q Consensus 144 g~afV~f~~~~~A~~Ai~~l~g~~ 167 (354)
|++.|+|...|+-+-|++.|+...
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQK 174 (241)
T ss_pred cceeeeeeehhhHHHHHHhhcccc
Confidence 578999999999999999987654
No 35
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=4.4e-18 Score=154.45 Aligned_cols=161 Identities=19% Similarity=0.368 Sum_probs=133.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~-~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
..+.+||.|||+++.+.||+++|.+ .|+|+.|.+..|.. |++||||.|||+++|.++||++.||. ..+.+ ++|.|
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk-~~~~G--R~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNK-YEVNG--RELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhh-ccccC--ceEEE
Confidence 3455999999999999999999986 89999999999985 99999999999999999999999964 33555 66666
Q ss_pred eccccccccc----------------------------------------------------------------------
Q 018554 92 KYADGELERL---------------------------------------------------------------------- 101 (354)
Q Consensus 92 ~~~~~~~~~~---------------------------------------------------------------------- 101 (354)
+-........
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 6321110000
Q ss_pred ----------------cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 102 ----------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 102 ----------------~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
..++||+||.+.+..+.|++.|.--|.|+.|.+--|+.+.++|+|.|+|++.-+|.+||..|++
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 3478999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcccCCCceeEEEEe
Q 018554 166 KHKMEGSSVPLVVKW 180 (354)
Q Consensus 166 ~~~~~g~~~~l~v~~ 180 (354)
.-.+ +++..+.+
T Consensus 279 ~g~~---~~~~~~Rl 290 (608)
T KOG4212|consen 279 QGLF---DRRMTVRL 290 (608)
T ss_pred CCCc---cccceeec
Confidence 4322 24555555
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=4.6e-18 Score=138.83 Aligned_cols=85 Identities=28% Similarity=0.372 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....++|||+||+++++|++|+++|++||.|.+|.|++|+.|++++|||||+|++.++|++||+.|++.. +.+ +.|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~-i~G--r~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE-LNG--RHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999998765 555 7888
Q ss_pred eecccccc
Q 018554 91 VKYADGEL 98 (354)
Q Consensus 91 v~~~~~~~ 98 (354)
|+++..+.
T Consensus 108 V~~a~~~~ 115 (144)
T PLN03134 108 VNPANDRP 115 (144)
T ss_pred EEeCCcCC
Confidence 88876543
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.75 E-value=4.8e-17 Score=136.99 Aligned_cols=159 Identities=21% Similarity=0.428 Sum_probs=131.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 12 EERVKLFVGQVPKHMTEAQLLA----MFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~----~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
....||||.||...+..++|++ +|++||+|.+|...+ |.+.||-|||.|.+.+.|..|+++|+|-.++ | +
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFy-g--K 80 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFY-G--K 80 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCccc-C--c
Confidence 3455999999999999999999 999999999988766 4679999999999999999999999987643 3 6
Q ss_pred cceeeccccccc---------------------------------------------------cccceEEEecCCCCCCH
Q 018554 88 PLQVKYADGELE---------------------------------------------------RLEHKLFIGMLPKNVSE 116 (354)
Q Consensus 88 ~l~v~~~~~~~~---------------------------------------------------~~~~~l~V~~l~~~~t~ 116 (354)
++++.|++.+.. .....||+.+||.+++.
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~ 160 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESES 160 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhH
Confidence 777777643221 11346899999999999
Q ss_pred HHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 117 ~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
+.|..+|.+|.-.++|+++... ++.|||+|.+...|..|...|.+..+-. .-.+.|.+++
T Consensus 161 e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~--~~~m~i~~a~ 220 (221)
T KOG4206|consen 161 EMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITK--KNTMQITFAK 220 (221)
T ss_pred HHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceecc--CceEEecccC
Confidence 9999999999999999998753 5789999999999999999999866422 3467777664
No 38
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.72 E-value=7.6e-17 Score=134.59 Aligned_cols=156 Identities=25% Similarity=0.317 Sum_probs=123.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEee-CCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIK-DKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~-d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
+...-+||||.+||.|+.-.||..+|..|---+.+.|.. ++..+-++-+|||+|.+..+|..|+++|||.++-......
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 345689999999999999999999999985555555543 3333345679999999999999999999998877776777
Q ss_pred ceeeccccccccc-------------------------------------------------------------------
Q 018554 89 LQVKYADGELERL------------------------------------------------------------------- 101 (354)
Q Consensus 89 l~v~~~~~~~~~~------------------------------------------------------------------- 101 (354)
|++.+++....+.
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 7777764322111
Q ss_pred --------------------cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 018554 102 --------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (354)
Q Consensus 102 --------------------~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~ 161 (354)
-.+|||.||..+||||+|+.+|+.|-....++|... .| -.+||++|++.+.|..|+.
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHH
Confidence 237999999999999999999999977666666532 22 4689999999999999999
Q ss_pred HhCCCcc
Q 018554 162 AINGKHK 168 (354)
Q Consensus 162 ~l~g~~~ 168 (354)
.|.|..+
T Consensus 267 ~lqg~~~ 273 (284)
T KOG1457|consen 267 HLQGNLL 273 (284)
T ss_pred Hhhccee
Confidence 9999763
No 39
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=1.3e-17 Score=140.68 Aligned_cols=77 Identities=25% Similarity=0.375 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
.+...++||||||+|++.+|+|+++|++||+|+++.|+.|+.|||+|||+||+|.|.++|.+|++. -..+|+|+...
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d--p~piIdGR~aN 84 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD--PNPIIDGRKAN 84 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC--CCCcccccccc
Confidence 455678999999999999999999999999999999999999999999999999999999999876 44677774333
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.71 E-value=4.2e-17 Score=152.59 Aligned_cols=160 Identities=22% Similarity=0.415 Sum_probs=122.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
+-.+||||||..+++|++|+.+|+.||.|+.|.+.+|..||+++||+||+|.+.++|++|++.||+ -.+.| +.|+|.
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng-felAG--r~ikV~ 353 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG-FELAG--RLIKVS 353 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc-ceecC--ceEEEE
Confidence 344499999999999999999999999999999999999999999999999999999999999998 44555 556555
Q ss_pred ccccccc--------------c-c--------------------------------------------------------
Q 018554 93 YADGELE--------------R-L-------------------------------------------------------- 101 (354)
Q Consensus 93 ~~~~~~~--------------~-~-------------------------------------------------------- 101 (354)
.-..+.. . .
T Consensus 354 ~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 433 (549)
T KOG0147|consen 354 VVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPA 433 (549)
T ss_pred EeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcc
Confidence 3210000 0 0
Q ss_pred ---------cceEEEecC--CCCCC--------HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018554 102 ---------EHKLFIGML--PKNVS--------EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (354)
Q Consensus 102 ---------~~~l~V~~l--~~~~t--------~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 162 (354)
+.++.+.|+ |.+.| .|||.+.+++||.|..|.+..+. -||.||+|.+.+.|..|+.+
T Consensus 434 ~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns----~g~VYvrc~s~~~A~~a~~a 509 (549)
T KOG0147|consen 434 DASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS----AGCVYVRCPSAEAAGTAVKA 509 (549)
T ss_pred ccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC----CceEEEecCcHHHHHHHHHH
Confidence 112233333 11111 35678888999999998887652 48999999999999999999
Q ss_pred hCCCcccCCCceeEEEEecC
Q 018554 163 INGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 163 l~g~~~~~g~~~~l~v~~a~ 182 (354)
|||.+ +.| +.|+.+|-.
T Consensus 510 lhgrW-F~g--r~Ita~~~~ 526 (549)
T KOG0147|consen 510 LHGRW-FAG--RMITAKYLP 526 (549)
T ss_pred Hhhhh-hcc--ceeEEEEee
Confidence 99987 666 577777653
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=7.5e-17 Score=131.65 Aligned_cols=82 Identities=26% Similarity=0.485 Sum_probs=74.5
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
....++|||+||++++|+++|+++|++||.|++++|+.| .++.++|||||+|++.++|++|++.||+.. ++| +.|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~-i~G--r~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE-LNG--RHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 334679999999999999999999999999999999998 488999999999999999999999999976 666 6899
Q ss_pred EEecCC
Q 018554 178 VKWADT 183 (354)
Q Consensus 178 v~~a~~ 183 (354)
|+|+..
T Consensus 108 V~~a~~ 113 (144)
T PLN03134 108 VNPAND 113 (144)
T ss_pred EEeCCc
Confidence 999864
No 42
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.71 E-value=2.5e-16 Score=145.55 Aligned_cols=161 Identities=17% Similarity=0.271 Sum_probs=120.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
+-....-|-+++|||++|++||.++|+.+ .|+++.+.+ .+|+..|-|||+|.+++++++|+++ .+..+.. +-|
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk--dR~~mg~--RYI 78 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK--DRESMGH--RYI 78 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHh--hHHHhCC--ceE
Confidence 44566778899999999999999999999 567755554 4699999999999999999999987 3333332 444
Q ss_pred eeecccccc------------ccccceEEEecCCCCCCHHHHHHhhccCCCeeE-EEEeeCCCCCcceEEEEEeCCHHHH
Q 018554 90 QVKYADGEL------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQQTSKGCAFLKYETKEQA 156 (354)
Q Consensus 90 ~v~~~~~~~------------~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~-i~i~~~~~~~~~g~afV~f~~~~~A 156 (354)
.|-.+..+. ......|-+++||+.||++||.++|+..-.|.+ |.++.+..+++.|-|||+|++.+.|
T Consensus 79 EVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 79 EVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESA 158 (510)
T ss_pred EEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHH
Confidence 444332111 112457899999999999999999998866666 5566677888899999999999999
Q ss_pred HHHHHHhCCCcccCCCceeEEEEec
Q 018554 157 LAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 157 ~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
++|+..... . +.- +=|+|-.+
T Consensus 159 e~Al~rhre-~-iGh--RYIEvF~S 179 (510)
T KOG4211|consen 159 EIALGRHRE-N-IGH--RYIEVFRS 179 (510)
T ss_pred HHHHHHHHH-h-hcc--ceEEeehh
Confidence 999976433 2 333 44555433
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=5.5e-17 Score=137.99 Aligned_cols=144 Identities=24% Similarity=0.421 Sum_probs=119.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
.+||||+|++.+.+.||.++|..||.|.+|.++. ||+||+|.|..+|+.||..+|++.+... . +.+.++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e-~--~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGE-R--LVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecce-e--eeeecc
Confidence 5799999999999999999999999999987644 6999999999999999999988775433 2 666666
Q ss_pred ccc---------------c------ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCH
Q 018554 95 DGE---------------L------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETK 153 (354)
Q Consensus 95 ~~~---------------~------~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~ 153 (354)
... . ....+.|.|.++..++.+++|.++|..+|.+....+. ++++||+|++.
T Consensus 71 r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 71 RGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQ 143 (216)
T ss_pred cccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhh
Confidence 521 0 1126789999999999999999999999998665553 67999999999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 154 EQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 154 ~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
++|.+|++.|+++. +.+ +.|++.
T Consensus 144 ~da~ra~~~l~~~~-~~~--~~l~~~ 166 (216)
T KOG0106|consen 144 EDAKRALEKLDGKK-LNG--RRISVE 166 (216)
T ss_pred hhhhhcchhccchh-hcC--ceeeec
Confidence 99999999999987 454 466663
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=4e-16 Score=145.18 Aligned_cols=86 Identities=34% Similarity=0.552 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+.||+.. +.+..+.|+
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~-~~g~~~~l~ 268 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI-PEGGSQPLT 268 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc-cCCCceeEE
Confidence 3457889999999999999999999999999999999999999999999999999999999999998765 566567888
Q ss_pred eeccccc
Q 018554 91 VKYADGE 97 (354)
Q Consensus 91 v~~~~~~ 97 (354)
|++++..
T Consensus 269 V~~a~~~ 275 (346)
T TIGR01659 269 VRLAEEH 275 (346)
T ss_pred EEECCcc
Confidence 8887653
No 45
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.8e-16 Score=133.77 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=69.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
.-+|||||+|+|++++|+|+++|++||+|++..|+.| .+++||||+||+|.|.++|.+|++.- ..+||| ++..|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp--~piIdG--R~aNcn 86 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP--NPIIDG--RKANCN 86 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC--CCcccc--cccccc
Confidence 3578999999999999999999999999999999999 58999999999999999999999854 467999 466777
Q ss_pred ecCC
Q 018554 180 WADT 183 (354)
Q Consensus 180 ~a~~ 183 (354)
+|--
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 7643
No 46
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.65 E-value=7.6e-15 Score=142.03 Aligned_cols=77 Identities=34% Similarity=0.606 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
-++|||||+|+++++|.||.++|++||+|++|.++. +||||||++....+|.+|+.+|++..+ ..+.|++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv---~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKV---ADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccc---cceeeEEe
Confidence 468999999999999999999999999999998876 457999999999999999999976553 34788889
Q ss_pred cccccc
Q 018554 93 YADGEL 98 (354)
Q Consensus 93 ~~~~~~ 98 (354)
|+..+-
T Consensus 491 Wa~g~G 496 (894)
T KOG0132|consen 491 WAVGKG 496 (894)
T ss_pred eeccCC
Confidence 986553
No 47
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.65 E-value=7e-15 Score=131.37 Aligned_cols=171 Identities=16% Similarity=0.237 Sum_probs=131.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-ccCCCCCc-
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KTLPGASS- 87 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~-~~~~g~~~- 87 (354)
+...+-.|+|++|-..++|.||.+.++.||.|..+..+..+. -|.|+|+|.+.|+.|+.-.-.. ..+.+..-
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchhh
Confidence 445667799999999999999999999999999998877553 7999999999999998743222 22222111
Q ss_pred -----cceeeccccccccccceEEEecCC--CCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 018554 88 -----PLQVKYADGELERLEHKLFIGMLP--KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 88 -----~l~v~~~~~~~~~~~~~l~V~~l~--~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai 160 (354)
.-++.....+.....+.|.+.-|. +.+|.|.|..++...|.|.+|.|++. ++. .|.|+|++.+.|++|.
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngV---QAmVEFdsv~~AqrAk 176 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGV---QAMVEFDSVEVAQRAK 176 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cce---eeEEeechhHHHHHHH
Confidence 111122222223334556655554 77999999999999999999999986 333 6999999999999999
Q ss_pred HHhCCCcccCCCceeEEEEecCChHHHHHHH
Q 018554 161 EAINGKHKMEGSSVPLVVKWADTEKERQARR 191 (354)
Q Consensus 161 ~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~ 191 (354)
++|||..++.|+ +.|+|+||++.+.+..++
T Consensus 177 ~alNGADIYsGC-CTLKIeyAkP~rlnV~kn 206 (494)
T KOG1456|consen 177 AALNGADIYSGC-CTLKIEYAKPTRLNVQKN 206 (494)
T ss_pred hhcccccccccc-eeEEEEecCcceeeeeec
Confidence 999999999987 899999999887665443
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=2.8e-15 Score=133.51 Aligned_cols=68 Identities=16% Similarity=0.372 Sum_probs=63.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
+...-.+|||..+..|.+|+||+.+|+.||+|.+|.+-++..++.+|||+||+|.+..+-..||..+|
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 34567899999999999999999999999999999999999999999999999999999999998775
No 49
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.1e-15 Score=129.54 Aligned_cols=86 Identities=23% Similarity=0.405 Sum_probs=78.7
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
+...+.++|-|.||+.+++|+||.++|.+||.|..|.|.+|+.||.+||||||.|.+.++|.+||+.|+|.-. ....
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---d~LI 260 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---DNLI 260 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---ceEE
Confidence 3455889999999999999999999999999999999999999999999999999999999999999988653 3478
Q ss_pred ceeeccccc
Q 018554 89 LQVKYADGE 97 (354)
Q Consensus 89 l~v~~~~~~ 97 (354)
|+|.|++++
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 899998864
No 50
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=4.5e-15 Score=142.73 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=124.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....+.|+|+|||..+..++|...|..||.|..|.+... |. -++|+|.+..+|.+|++.|....+ +..++
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~---k~~pl 451 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRF---KSAPL 451 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhh---ccCcc
Confidence 4456788999999999999999999999999998844321 21 389999999999999998865442 22333
Q ss_pred eeecccccccc---------------------------------------------------ccceEEEecCCCCCCHHH
Q 018554 90 QVKYADGELER---------------------------------------------------LEHKLFIGMLPKNVSEAE 118 (354)
Q Consensus 90 ~v~~~~~~~~~---------------------------------------------------~~~~l~V~~l~~~~t~~~ 118 (354)
.+.|+..+... ..++|||.||++++|.++
T Consensus 452 yle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~ 531 (725)
T KOG0110|consen 452 YLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLED 531 (725)
T ss_pred ccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhH
Confidence 33332111000 033499999999999999
Q ss_pred HHHhhccCCCeeEEEEeeCCCC----CcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 119 VSALFSIYGTIKDLQILRGSQQ----TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 119 l~~~F~~~G~v~~i~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
|..+|...|.|.++.|...+.. .|.|||||+|.+.++|+.|++.|+|+. ++|+ .|.|+++.
T Consensus 532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv-ldGH--~l~lk~S~ 596 (725)
T KOG0110|consen 532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV-LDGH--KLELKISE 596 (725)
T ss_pred HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce-ecCc--eEEEEecc
Confidence 9999999999999988776443 345999999999999999999999976 8886 45555554
No 51
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.61 E-value=2e-15 Score=136.39 Aligned_cols=173 Identities=18% Similarity=0.227 Sum_probs=129.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
...++-|+++|||++++|+||.+++..||+|..+.+.+-++ -|||+|.|+++|...+....... -.-+..++.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~-p~lr~~~~y 97 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVT-PVLRGQPIY 97 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccC-ccccCccee
Confidence 45788999999999999999999999999999998887554 79999999999988544332111 111223334
Q ss_pred eecccccccc-----------------------------------------ccceEEEecCCCCCCHHHHHHhhccCCCe
Q 018554 91 VKYADGELER-----------------------------------------LEHKLFIGMLPKNVSEAEVSALFSIYGTI 129 (354)
Q Consensus 91 v~~~~~~~~~-----------------------------------------~~~~l~V~~l~~~~t~~~l~~~F~~~G~v 129 (354)
+.|+....-. ..-+++|+++-+.++-|.|+++|++||.|
T Consensus 98 iq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~V 177 (492)
T KOG1190|consen 98 IQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFV 177 (492)
T ss_pred ehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhccee
Confidence 4432110000 01256889999999999999999999999
Q ss_pred eEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCChHHHHHHHHHH
Q 018554 130 KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQK 194 (354)
Q Consensus 130 ~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~ 194 (354)
.+|.-+...++ -.|+|.|.+.+.|..|..+|+|.-+++|+ |.|+|.|.+......+-...+
T Consensus 178 lKIiTF~Knn~---FQALvQy~d~~sAq~AK~aLdGqnIyngc-CtLrId~Sklt~LnvKynndk 238 (492)
T KOG1190|consen 178 LKIITFTKNNG---FQALVQYTDAVSAQAAKLALDGQNIYNGC-CTLRIDFSKLTDLNVKYNNDK 238 (492)
T ss_pred EEEEEEecccc---hhhhhhccchhhHHHHHHhccCCcccCce-eEEEeehhhcccceeeccccc
Confidence 99877765432 25999999999999999999999999987 899999987654444333333
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=2.5e-15 Score=107.25 Aligned_cols=63 Identities=30% Similarity=0.648 Sum_probs=60.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 018554 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (354)
Q Consensus 17 lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~ 80 (354)
|||+|||.++|+++|+++|++||.|..+.++.+ .+++.+|||||+|.+.++|++|++.+++..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~ 63 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKK 63 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCE
Confidence 799999999999999999999999999999998 568999999999999999999999998855
No 53
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.4e-15 Score=115.04 Aligned_cols=83 Identities=20% Similarity=0.414 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...++++||||||+..++||.|.++|+++|+|..|.+=.|+.++...|||||+|.+.++|..|++-+++.. ++. ++|
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr-Ldd--r~i 108 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR-LDD--RPI 108 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc-ccc--cce
Confidence 45689999999999999999999999999999999999999999999999999999999999999998866 544 778
Q ss_pred eeeccc
Q 018554 90 QVKYAD 95 (354)
Q Consensus 90 ~v~~~~ 95 (354)
+++|.-
T Consensus 109 r~D~D~ 114 (153)
T KOG0121|consen 109 RIDWDA 114 (153)
T ss_pred eeeccc
Confidence 877654
No 54
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=4.3e-15 Score=145.44 Aligned_cols=108 Identities=24% Similarity=0.269 Sum_probs=92.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEF--ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~--G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...++|||+||++++||++|+++|++| |+|++|++++ +||||+|++.++|++|++.||+.. +.+ +.|
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~-i~G--r~I 299 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKE-LEG--SEI 299 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCE-ECC--EEE
Confidence 346789999999999999999999999 9999998764 499999999999999999998876 555 888
Q ss_pred eeecccccccc-----------------------------ccceEEEecCCCCCCHHHHHHhhccCCCee
Q 018554 90 QVKYADGELER-----------------------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130 (354)
Q Consensus 90 ~v~~~~~~~~~-----------------------------~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~ 130 (354)
+|.|+++.... ...++++++++++.+++.++++|..+|.|.
T Consensus 300 ~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 300 EVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred EEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 99888653222 256899999999999999999999998743
No 55
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.58 E-value=3.3e-14 Score=128.62 Aligned_cols=144 Identities=33% Similarity=0.522 Sum_probs=112.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeec
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~ 93 (354)
.++|||+||+.++++++|.++|.+||.|..|.+..|+.+++++|||||+|.+.++|.+|++.+++.. +.+ +.+.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~-~~~--~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE-LEG--RPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe-ECC--ceeEeec
Confidence 6999999999999999999999999999999999999999999999999999999999999998665 545 6666666
Q ss_pred cc----ccccc---------------------ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCC-cceEEE
Q 018554 94 AD----GELER---------------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAF 147 (354)
Q Consensus 94 ~~----~~~~~---------------------~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~-~~g~af 147 (354)
.. ..... ....+++.+++..++.+++...|..+|.+..+.+....... .....+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 192 AQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred cccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccc
Confidence 32 11111 14578999999999999999999999999777666553322 223333
Q ss_pred EEeCCHHHHHHHH
Q 018554 148 LKYETKEQALAAL 160 (354)
Q Consensus 148 V~f~~~~~A~~Ai 160 (354)
+.+.....+....
T Consensus 272 ~~~~~~~~~~~~~ 284 (306)
T COG0724 272 VGNEASKDALESN 284 (306)
T ss_pred cchhHHHhhhhhh
Confidence 4444444444433
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.5e-14 Score=103.22 Aligned_cols=66 Identities=42% Similarity=0.822 Sum_probs=62.4
Q ss_pred EEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCC
Q 018554 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (354)
Q Consensus 105 l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 171 (354)
|||+|||.++|+++|+++|++||.|..+.+..+..+..+++|||+|++.++|++|++.|+|.. ++|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~-~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKK-ING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCE-ECc
Confidence 799999999999999999999999999999998888889999999999999999999999966 665
No 57
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.56 E-value=1.5e-13 Score=122.00 Aligned_cols=161 Identities=13% Similarity=0.302 Sum_probs=126.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVD--------EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~--------~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
..++.|||.|||.++|.+++.++|++||-|. .|+|.++.. |+-+|=|.+.|-..++++.|++.|++..+ .
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~-r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL-R 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc-c
Confidence 3456699999999999999999999999876 378888876 99999999999999999999999988664 3
Q ss_pred CCCccceeeccccc---------------------------------------cccccceEEEecCC----CCCC-----
Q 018554 84 GASSPLQVKYADGE---------------------------------------LERLEHKLFIGMLP----KNVS----- 115 (354)
Q Consensus 84 g~~~~l~v~~~~~~---------------------------------------~~~~~~~l~V~~l~----~~~t----- 115 (354)
| +.|+|..|+-+ +.+..++|.+.|+= ...+
T Consensus 210 g--~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 210 G--KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred C--cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 4 66777655211 11115678888872 1222
Q ss_pred --HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 116 --EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 116 --~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
+++|++-+++||.|.+|.|.... ..|.+-|.|.+.++|..||+.|+|+. ++| +.|.....+
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~h---PdGvvtV~f~n~eeA~~ciq~m~GR~-fdg--Rql~A~i~D 350 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDRH---PDGVVTVSFRNNEEADQCIQTMDGRW-FDG--RQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEeccC---CCceeEEEeCChHHHHHHHHHhcCee-ecc--eEEEEEEeC
Confidence 45678889999999999988431 26889999999999999999999987 777 566655543
No 58
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.56 E-value=7.2e-14 Score=126.39 Aligned_cols=158 Identities=20% Similarity=0.318 Sum_probs=128.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC-CFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~-aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
--+++|+++-.-+|-|.|..+|++||.|..|.-+.. +.|| |.|+|.|.++|..|..+|+|+.+..+ -+.|+++
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId 223 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRID 223 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEee
Confidence 346889999999999999999999999998866553 3456 99999999999999999999886554 5666666
Q ss_pred ccc---------cccccc-------------------------------------------------------cceEEEe
Q 018554 93 YAD---------GELERL-------------------------------------------------------EHKLFIG 108 (354)
Q Consensus 93 ~~~---------~~~~~~-------------------------------------------------------~~~l~V~ 108 (354)
|++ .++.|+ .+.|.|.
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEe
Confidence 542 111111 2578888
Q ss_pred cCC-CCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 109 MLP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 109 ~l~-~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
||. +.+|.+.|..+|..||+|.+|+|++++ +.-|+|.|.|...|+-|++.|+|..+ .| ++|+|.+.+..
T Consensus 304 nln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l-~g--k~lrvt~SKH~ 373 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKL-YG--KKLRVTLSKHT 373 (492)
T ss_pred cCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhccee-cC--ceEEEeeccCc
Confidence 885 679999999999999999999999875 34699999999999999999999874 44 68899887654
No 59
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=4.8e-16 Score=125.93 Aligned_cols=79 Identities=24% Similarity=0.508 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
-.++.-|||||||.+.||.||..+|++||+|.+|.+++|+.||+++||||+.|+|..+...|+..|||..+ .+ +.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki-~g--Rtir 108 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI-LG--RTIR 108 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee-cc--eeEE
Confidence 35677899999999999999999999999999999999999999999999999999999999999998774 33 6777
Q ss_pred ee
Q 018554 91 VK 92 (354)
Q Consensus 91 v~ 92 (354)
|.
T Consensus 109 VD 110 (219)
T KOG0126|consen 109 VD 110 (219)
T ss_pred ee
Confidence 66
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.54 E-value=1.9e-13 Score=124.52 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=62.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~ 78 (354)
......++||+||...+..+.|++.|.-.|+|+.|.+-.||. |.++|||.++|...-+|-.||..+++
T Consensus 211 ~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 211 SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred CCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhcc
Confidence 345667899999999999999999999999999999999986 79999999999999999999998864
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.5e-14 Score=120.48 Aligned_cols=83 Identities=25% Similarity=0.483 Sum_probs=75.8
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
..++++|-|.||+.+++|++|+++|..||.|..+.+.+| .+|.+||||||.|.++++|++||+.|||.- + .++-|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~g-y--d~LILr 262 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYG-Y--DNLILR 262 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcc-c--ceEEEE
Confidence 335789999999999999999999999999999999999 599999999999999999999999999965 3 448899
Q ss_pred EEecCCh
Q 018554 178 VKWADTE 184 (354)
Q Consensus 178 v~~a~~~ 184 (354)
|+|++++
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999864
No 62
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.7e-14 Score=115.33 Aligned_cols=80 Identities=23% Similarity=0.401 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..-.++||||||+.++++.||..+|..||+|.+|+|-+.+ -|||||||+|..+|++|+..|+++. +++ ..++
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~-~cG--~r~r 78 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKD-ICG--SRIR 78 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCcc-ccC--ceEE
Confidence 3458999999999999999999999999999999998854 4899999999999999999999988 555 6777
Q ss_pred eecccccc
Q 018554 91 VKYADGEL 98 (354)
Q Consensus 91 v~~~~~~~ 98 (354)
|..+....
T Consensus 79 VE~S~G~~ 86 (195)
T KOG0107|consen 79 VELSTGRP 86 (195)
T ss_pred EEeecCCc
Confidence 77665443
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=4.5e-14 Score=100.95 Aligned_cols=66 Identities=32% Similarity=0.593 Sum_probs=59.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 17 lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
|||+|||+++++++|+++|+.||.|..+.+.+++. ++.+|+|||+|.+.++|.+|++.+++.. +.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~-~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKE-IDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEE-ETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcE-ECC
Confidence 79999999999999999999999999999999988 8999999999999999999999986544 444
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=5.5e-14 Score=123.91 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=71.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.++|+|.|||....|.||+..|++||.|.+|+|+++.-| ||||+||+|++.+||++|-++|||.. ++| ++|+|..|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~-VEG--RkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTV-VEG--RKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcce-eec--eEEEEecc
Confidence 678999999999999999999999999999999998655 49999999999999999999999987 777 68888887
Q ss_pred CCh
Q 018554 182 DTE 184 (354)
Q Consensus 182 ~~~ 184 (354)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 543
No 65
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.5e-13 Score=125.83 Aligned_cols=157 Identities=21% Similarity=0.368 Sum_probs=115.5
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCC--Cccc---EEEEEeCCHHHHHHHHHHhcCC-
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR--ASRG---CCFVICPSRQEADKAVNACHNK- 79 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg--~~~G---~aFV~f~~~~~A~~Ai~~l~~~- 79 (354)
+..+...-+++||||+||++++|++|...|..||.+.--+-.+....+ -.+| |+|+.|+++.++..-|.++...
T Consensus 251 ~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~ 330 (520)
T KOG0129|consen 251 RGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGE 330 (520)
T ss_pred CCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcc
Confidence 444556678999999999999999999999999986433322221111 2456 9999999999999888876421
Q ss_pred --ccCCC-----CCccceee---ccc-------cccccccceEEEecCCCCCCHHHHHHhhc-cCCCeeEEEEeeC-CCC
Q 018554 80 --KTLPG-----ASSPLQVK---YAD-------GELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRG-SQQ 140 (354)
Q Consensus 80 --~~~~g-----~~~~l~v~---~~~-------~~~~~~~~~l~V~~l~~~~t~~~l~~~F~-~~G~v~~i~i~~~-~~~ 140 (354)
.++.- +.+.++|. .++ .......+|||||+|+--++.++|..+|+ .||.|..+-|-.| +-.
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 10100 11112221 111 11223378999999999999999999997 8999999999999 567
Q ss_pred CcceEEEEEeCCHHHHHHHHHH
Q 018554 141 TSKGCAFLKYETKEQALAALEA 162 (354)
Q Consensus 141 ~~~g~afV~f~~~~~A~~Ai~~ 162 (354)
-.+|-|-|+|++..+-.+||++
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCcceeeecccHHHHHHHhh
Confidence 7899999999999999999975
No 66
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.1e-13 Score=131.28 Aligned_cols=172 Identities=20% Similarity=0.374 Sum_probs=129.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.......++|||++||...+++.++++.+.||.+....++.|..+|-++||||.+|.|....+.|+..|||+.+. + +
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg-d--~ 359 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG-D--K 359 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc-C--c
Confidence 345567789999999999999999999999999999999999999999999999999999999999999998853 3 3
Q ss_pred cceeeccccccc--c-----------------------ccceEEEecC--CCCC-CH-------HHHHHhhccCCCeeEE
Q 018554 88 PLQVKYADGELE--R-----------------------LEHKLFIGML--PKNV-SE-------AEVSALFSIYGTIKDL 132 (354)
Q Consensus 88 ~l~v~~~~~~~~--~-----------------------~~~~l~V~~l--~~~~-t~-------~~l~~~F~~~G~v~~i 132 (354)
.|.|..+-.... . ....|...|+ +.++ ++ |+|+..+++||.|..|
T Consensus 360 ~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v 439 (500)
T KOG0120|consen 360 KLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSV 439 (500)
T ss_pred eeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEE
Confidence 444433211000 0 0112222221 0111 11 3467788899999999
Q ss_pred EEeeC-CCC---CcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCChH
Q 018554 133 QILRG-SQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185 (354)
Q Consensus 133 ~i~~~-~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (354)
.|.++ ... ...|..||+|.+.+++++|.++|+|.. +++ +.|..+|-+..+
T Consensus 440 ~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK-F~n--RtVvtsYydeDk 493 (500)
T KOG0120|consen 440 EIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK-FAN--RTVVASYYDEDK 493 (500)
T ss_pred ecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCce-eCC--cEEEEEecCHHH
Confidence 99987 433 335899999999999999999999986 555 677888776553
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=9.5e-14 Score=121.41 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeec
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~ 93 (354)
.++|||+||++++||++|+++|+.||+|++|.|++|+. .+|||||+|.+.++|++||. |++.. +.+ +.|+|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~-l~g--r~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGAT-IVD--QSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCe-eCC--ceEEEEe
Confidence 68999999999999999999999999999999999864 57899999999999999995 87766 555 7788887
Q ss_pred ccc
Q 018554 94 ADG 96 (354)
Q Consensus 94 ~~~ 96 (354)
++.
T Consensus 77 a~~ 79 (260)
T PLN03120 77 AED 79 (260)
T ss_pred ccC
Confidence 653
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=5.5e-14 Score=123.93 Aligned_cols=88 Identities=28% Similarity=0.469 Sum_probs=75.1
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
.++.....++|+|.|||+..-|-||+..|++||+|.+|.||-+. .-||||+||+|++.+||++|.++||+.. +.|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~-VEG-- 163 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTV-VEG-- 163 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcce-eec--
Confidence 34455667899999999999999999999999999999998864 3489999999999999999999999977 566
Q ss_pred ccceeeccccccc
Q 018554 87 SPLQVKYADGELE 99 (354)
Q Consensus 87 ~~l~v~~~~~~~~ 99 (354)
+.|.|..+..+..
T Consensus 164 RkIEVn~ATarV~ 176 (376)
T KOG0125|consen 164 RKIEVNNATARVH 176 (376)
T ss_pred eEEEEeccchhhc
Confidence 7778877655443
No 69
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=8.9e-14 Score=121.15 Aligned_cols=82 Identities=20% Similarity=0.385 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...+-+||||+-|+.+++|.+|++.|+.||+|+.|.|++|+.||+++|||||+|+++.+...|.+..++.. |++ +.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~-Idg--rri 173 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK-IDG--RRI 173 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce-ecC--cEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999998766 666 555
Q ss_pred eeecc
Q 018554 90 QVKYA 94 (354)
Q Consensus 90 ~v~~~ 94 (354)
-|.+-
T Consensus 174 ~VDvE 178 (335)
T KOG0113|consen 174 LVDVE 178 (335)
T ss_pred EEEec
Confidence 55543
No 70
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.47 E-value=6.1e-14 Score=116.03 Aligned_cols=85 Identities=28% Similarity=0.419 Sum_probs=76.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
..+.+...+|-|-||-..++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++|+++|++.. ++| +
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~-ldg--R 83 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV-LDG--R 83 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee-ecc--c
Confidence 4566778899999999999999999999999999999999999999999999999999999999999998865 666 7
Q ss_pred cceeeccc
Q 018554 88 PLQVKYAD 95 (354)
Q Consensus 88 ~l~v~~~~ 95 (354)
.|.|++++
T Consensus 84 elrVq~ar 91 (256)
T KOG4207|consen 84 ELRVQMAR 91 (256)
T ss_pred eeeehhhh
Confidence 77777654
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.4e-13 Score=118.87 Aligned_cols=75 Identities=15% Similarity=0.299 Sum_probs=67.0
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.++|||+||++.+|+++|+++|+.||+|++|+|+++.. .+|||||+|++.++|..|+. |||.. +.| +.|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~-l~g--r~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGAT-IVD--QSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCe-eCC--ceEEEEec
Confidence 46899999999999999999999999999999998853 47999999999999999995 99977 555 67888887
Q ss_pred C
Q 018554 182 D 182 (354)
Q Consensus 182 ~ 182 (354)
+
T Consensus 78 ~ 78 (260)
T PLN03120 78 E 78 (260)
T ss_pred c
Confidence 5
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=5e-13 Score=95.49 Aligned_cols=67 Identities=30% Similarity=0.697 Sum_probs=60.2
Q ss_pred EEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCC
Q 018554 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (354)
Q Consensus 105 l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~ 172 (354)
|||+|||+++++++|+++|+.||.|..+.+.+++++.++++|||+|.+.++|.+|++.+++.. ++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~-~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKE-IDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcE-ECCE
Confidence 799999999999999999999999999999998778899999999999999999999988765 6663
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=2.7e-13 Score=125.37 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=69.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCH--HHHHHHHHHhcCCccCCCCC
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSR--QEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~--~~A~~Ai~~l~~~~~~~g~~ 86 (354)
+......+||||||+++++++||+.+|..||.|.+|.|+++ || ||||||+|.+. +++.+||+.|++..+ .|
T Consensus 5 es~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEW-KG-- 77 (759)
T PLN03213 5 SSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW-KG-- 77 (759)
T ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCee-cC--
Confidence 34456689999999999999999999999999999999954 56 89999999987 789999999998774 44
Q ss_pred ccceeecccc
Q 018554 87 SPLQVKYADG 96 (354)
Q Consensus 87 ~~l~v~~~~~ 96 (354)
+.|+|..+++
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 7888887753
No 74
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.6e-13 Score=109.66 Aligned_cols=76 Identities=25% Similarity=0.502 Sum_probs=66.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.++||||||+..+++.||..+|..||.|..|.|-+.. .|||||+|++..+|+.|+..|+|+. |.| ..|.|++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~-~cG--~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKD-ICG--SRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCcc-ccC--ceEEEEee
Confidence 5899999999999999999999999999999998753 6899999999999999999999988 555 56777766
Q ss_pred CCh
Q 018554 182 DTE 184 (354)
Q Consensus 182 ~~~ 184 (354)
...
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 443
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.4e-13 Score=104.17 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=71.7
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
+.+++|||+||+..++||.|.++|+++|+|..|.+=.|+ +...-|||||+|.+.++|..|++-++|.. ++. +.|++
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr-Ldd--r~ir~ 110 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR-LDD--RPIRI 110 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc-ccc--cceee
Confidence 347899999999999999999999999999999988774 55667999999999999999999999987 555 68888
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
.|.-.-
T Consensus 111 D~D~GF 116 (153)
T KOG0121|consen 111 DWDAGF 116 (153)
T ss_pred eccccc
Confidence 886443
No 76
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=5.7e-13 Score=116.19 Aligned_cols=80 Identities=29% Similarity=0.496 Sum_probs=71.3
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
.-+||||+.|+++++|.+|+..|+.||.|+.|.|++| -+|+++|||||+|+++.+...|.+..+|.. |+|+.+.|.|+
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~-Idgrri~VDvE 178 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK-IDGRRILVDVE 178 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce-ecCcEEEEEec
Confidence 4689999999999999999999999999999999999 599999999999999999999999999976 88864444444
Q ss_pred ec
Q 018554 180 WA 181 (354)
Q Consensus 180 ~a 181 (354)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 33
No 77
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.42 E-value=1e-11 Score=120.71 Aligned_cols=79 Identities=27% Similarity=0.600 Sum_probs=70.5
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
++|||||+|+.+++|+||+++|+.||+|++|.++.. |+||||++.++++|.+|+.+|++..+ ..+.|+|+||
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv---~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKV---ADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccc---cceeeEEeee
Confidence 779999999999999999999999999999999976 99999999999999999999997554 3478999999
Q ss_pred CChHHHH
Q 018554 182 DTEKERQ 188 (354)
Q Consensus 182 ~~~~~~~ 188 (354)
..+..+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 7665443
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.4e-12 Score=92.74 Aligned_cols=63 Identities=38% Similarity=0.641 Sum_probs=59.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~ 80 (354)
+|||+|||.++++++|+++|++||.|.++.+.+++ +.++|+|||+|.+.++|++|++.+++..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~ 63 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTK 63 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcE
Confidence 59999999999999999999999999999999887 7789999999999999999999998755
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.2e-12 Score=112.77 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
...+|||+||++++||++|+++|+.||+|++|+|++|. +.+|||||+|+++++|+.|+ .|+|..+ .+ ..|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l-~d--~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATI-VD--QRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCee-CC--ceEEEE
Confidence 45899999999999999999999999999999999994 45689999999999999999 6777774 33 456655
Q ss_pred c
Q 018554 93 Y 93 (354)
Q Consensus 93 ~ 93 (354)
.
T Consensus 77 ~ 77 (243)
T PLN03121 77 R 77 (243)
T ss_pred e
Confidence 4
No 80
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=5.7e-13 Score=125.87 Aligned_cols=82 Identities=26% Similarity=0.466 Sum_probs=76.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
+.|||||||++++|++|.++|++.|.|.+++++.|+.||+.+||||++|.+.++|.+|++.|++.. +.+ +.|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~-~~g--r~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAE-FNG--RKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcc-cCC--ceEEeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999877 444 89999998
Q ss_pred ccccc
Q 018554 95 DGELE 99 (354)
Q Consensus 95 ~~~~~ 99 (354)
..+..
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 65544
No 81
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.6e-12 Score=95.92 Aligned_cols=109 Identities=21% Similarity=0.328 Sum_probs=81.7
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
..+-..+..+-|||.|||+++|.|+..++|.+||.|..|+|-.++. .+|-|||.|+|..+|++|++.|.+-.+ .
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~-~-- 83 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNV-D-- 83 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhccccc-C--
Confidence 3344677889999999999999999999999999999999977654 679999999999999999999988664 3
Q ss_pred CccceeeccccccccccceEEEecCCCCCCHHHHHHhhccCC
Q 018554 86 SSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYG 127 (354)
Q Consensus 86 ~~~l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G 127 (354)
.+.+.|-+..+..... -+...-.+++|..+=++||
T Consensus 84 ~ryl~vlyyq~~~~~~-------~~~~~k~~~~l~~~~~ky~ 118 (124)
T KOG0114|consen 84 NRYLVVLYYQPEDAFK-------LMDSRKAREELSILKEKYG 118 (124)
T ss_pred CceEEEEecCHHHHHH-------HHHhHHhhhHHHHHHHHhc
Confidence 3677776655433211 0122234555555555555
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=2.5e-12 Score=119.00 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=72.2
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCH--HHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETK--EQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~--~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..+||||||.+.++++||+++|+.||.|.+|.|++. +| ||||||+|.+. .++.+||+.|||.. +.| +.|+|.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAE-WKG--R~LKVN 83 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCV-WKG--GRLRLE 83 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCe-ecC--ceeEEe
Confidence 568999999999999999999999999999999955 44 99999999987 78999999999987 555 689999
Q ss_pred ecCChHHHHHH
Q 018554 180 WADTEKERQAR 190 (354)
Q Consensus 180 ~a~~~~~~~~~ 190 (354)
.|++....+-+
T Consensus 84 KAKP~YLeRLk 94 (759)
T PLN03213 84 KAKEHYLARLK 94 (759)
T ss_pred eccHHHHHHHH
Confidence 99887654433
No 83
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=4.7e-13 Score=110.82 Aligned_cols=78 Identities=29% Similarity=0.490 Sum_probs=70.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
...|-|-||.+.++.++|+.+|++||.|-+|.|.+|. +..++|||||.|.+..+|+.|+++|+|.. |+| +.|.|.+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~-ldg--RelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV-LDG--RELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee-ecc--ceeeehh
Confidence 4579999999999999999999999999999999995 88999999999999999999999999976 888 5677766
Q ss_pred cC
Q 018554 181 AD 182 (354)
Q Consensus 181 a~ 182 (354)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 53
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.5e-13 Score=113.35 Aligned_cols=83 Identities=33% Similarity=0.534 Sum_probs=76.3
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++||||+|..++||..|...|..||.|.+|.+..| .+++.|||+||+|+..|+|..||..+|+.. |.| +.|+|.+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE-L~G--rtirVN~ 86 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE-LFG--RTIRVNL 86 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh-hcc--eeEEEee
Confidence 578999999999999999999999999999999999 689999999999999999999999999988 555 6899999
Q ss_pred cCChHHH
Q 018554 181 ADTEKER 187 (354)
Q Consensus 181 a~~~~~~ 187 (354)
|++.+.+
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9877543
No 85
>smart00360 RRM RNA recognition motif.
Probab=99.38 E-value=2.4e-12 Score=91.06 Aligned_cols=62 Identities=35% Similarity=0.644 Sum_probs=58.5
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 018554 19 VGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (354)
Q Consensus 19 Vg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~ 80 (354)
|+|||.++++++|+++|+.||.|.++.+..++.+++++|+|||+|.+.++|.+|++.+++..
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~ 62 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKE 62 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCe
Confidence 68999999999999999999999999999998889999999999999999999999997654
No 86
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1.2e-13 Score=112.01 Aligned_cols=103 Identities=26% Similarity=0.464 Sum_probs=80.3
Q ss_pred HHHHHhcCCccCCCCCccceeeccccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEE
Q 018554 71 KAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLK 149 (354)
Q Consensus 71 ~Ai~~l~~~~~~~g~~~~l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~ 149 (354)
+-|+.||.+.+-.| ..-+++|...-+ .+.-||||||++++||.||.-+|++||+|.+|.+++| .+|+|+||||+.
T Consensus 8 k~i~~lne~Elq~g--~~~~~SWH~~Yk--dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLc 83 (219)
T KOG0126|consen 8 KNIQKLNERELQLG--IADKKSWHQEYK--DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLC 83 (219)
T ss_pred HHHHHhhHHhhccc--cccccchhhhcc--cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEE
Confidence 34556655543333 222445543322 2567999999999999999999999999999999999 599999999999
Q ss_pred eCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 150 YETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 150 f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
|++..+..-|+..|||.. +.| +.|+|..
T Consensus 84 YEDQRSTILAVDN~NGik-i~g--RtirVDH 111 (219)
T KOG0126|consen 84 YEDQRSTILAVDNLNGIK-ILG--RTIRVDH 111 (219)
T ss_pred ecCccceEEEEeccCCce-ecc--eeEEeee
Confidence 999999999999999976 555 4566654
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.7e-13 Score=114.44 Aligned_cols=139 Identities=20% Similarity=0.264 Sum_probs=117.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
..+..+||||+|+...++||-|.++|-+-|+|..|.|..++. ++.+ ||||.|+++.++..|++.+|+..+ .+ ..+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l-~~--~e~ 79 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDL-EE--DEE 79 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchh-cc--chh
Confidence 456789999999999999999999999999999999988876 5555 999999999999999999988664 33 344
Q ss_pred eeeccccccccccceEEEec----CCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 90 QVKYADGELERLEHKLFIGM----LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 90 ~v~~~~~~~~~~~~~l~V~~----l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
++ +++.|+ |...++++.+.+.|+.-|.++.+++.++.+++.+.+.|+++-...+.-.++..-.+
T Consensus 80 q~------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 80 QR------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred hc------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 43 466677 88899999999999999999999999998899999999988776666666654433
No 88
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=5.1e-12 Score=89.72 Aligned_cols=71 Identities=42% Similarity=0.776 Sum_probs=63.5
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
+|||+||+.++++++|+++|..||.|.++.+.++. +.++++|||+|.+.++|++|++.+++.. ++| +.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~-~~~--~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTK-LGG--RPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcE-ECC--EEEee
Confidence 58999999999999999999999999999999877 6778999999999999999999999866 555 45554
No 89
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.1e-11 Score=91.62 Aligned_cols=84 Identities=29% Similarity=0.434 Sum_probs=70.8
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.+.|||.|||.++|.|++.++|.+||.|..|+|=-.. .-+|-|||.|++..+|.+|++.|+|..+ + .+-|.|-+-
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~-~--~ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNV-D--NRYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhccccc-C--CceEEEEec
Confidence 4679999999999999999999999999999986542 2289999999999999999999999874 4 477888887
Q ss_pred CChHHHHHH
Q 018554 182 DTEKERQAR 190 (354)
Q Consensus 182 ~~~~~~~~~ 190 (354)
...+..+..
T Consensus 93 q~~~~~~~~ 101 (124)
T KOG0114|consen 93 QPEDAFKLM 101 (124)
T ss_pred CHHHHHHHH
Confidence 766555433
No 90
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.5e-13 Score=110.56 Aligned_cols=87 Identities=25% Similarity=0.407 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....++||||+|-.+++|..|...|-.||.|.+|.+..|..+++.|||+||+|...|+|..||..+|+.. +.| +.|+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE-L~G--rtir 83 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE-LFG--RTIR 83 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh-hcc--eeEE
Confidence 4567999999999999999999999999999999999999999999999999999999999999998877 555 8899
Q ss_pred eecccccccc
Q 018554 91 VKYADGELER 100 (354)
Q Consensus 91 v~~~~~~~~~ 100 (354)
|.++++.+-+
T Consensus 84 VN~AkP~kik 93 (298)
T KOG0111|consen 84 VNLAKPEKIK 93 (298)
T ss_pred EeecCCcccc
Confidence 9998876543
No 91
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.34 E-value=8.2e-12 Score=112.31 Aligned_cols=165 Identities=20% Similarity=0.254 Sum_probs=117.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh---c-CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC-----
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKE---F-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL----- 82 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~---~-G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~----- 82 (354)
++..-|-+++||+++++.|+.++|.. . |-++.|..++..+ ||..|-|||.|..+++|+.|+.+- +..+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~kh--rq~iGqRYI 235 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRKH--RQNIGQRYI 235 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHHH--HHHHhHHHH
Confidence 44566788999999999999999952 2 2456666666544 899999999999999999998752 1111
Q ss_pred -----------------------CCCCcccee--eccccccccccceEEEecCCCCCCHHHHHHhhccCCC-eeE--EEE
Q 018554 83 -----------------------PGASSPLQV--KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKD--LQI 134 (354)
Q Consensus 83 -----------------------~g~~~~l~v--~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~-v~~--i~i 134 (354)
.+....+-- -.......+...+|-+++||++.+.|||.++|..|-. |+. |.+
T Consensus 236 ElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHm 315 (508)
T KOG1365|consen 236 ELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHM 315 (508)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEE
Confidence 111111100 0000011122568999999999999999999998864 444 788
Q ss_pred eeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 135 ~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
+.+..|+..|-|||+|.+.|+|..|..+.+.+. . +.+-|+|--+.
T Consensus 316 v~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~-m--k~RYiEvfp~S 360 (508)
T KOG1365|consen 316 VLNGQGRPSGEAFIQMRNAERARAAAQKCHKKL-M--KSRYIEVFPCS 360 (508)
T ss_pred EEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhh-c--ccceEEEeecc
Confidence 888899999999999999999999988777654 3 33445554443
No 92
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=2.1e-12 Score=99.82 Aligned_cols=81 Identities=23% Similarity=0.377 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
+.+.--|||.++...++|++|.+.|..||+|++|.+-.|+.||-.+|||.|+|++.+.|.+|++++|+..++ + ..+.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll-~--q~v~ 145 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL-G--QNVS 145 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh-C--Ccee
Confidence 444556999999999999999999999999999999999999999999999999999999999999987754 4 5666
Q ss_pred eecc
Q 018554 91 VKYA 94 (354)
Q Consensus 91 v~~~ 94 (354)
|.|+
T Consensus 146 VDw~ 149 (170)
T KOG0130|consen 146 VDWC 149 (170)
T ss_pred EEEE
Confidence 6665
No 93
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=4.8e-12 Score=116.02 Aligned_cols=81 Identities=28% Similarity=0.495 Sum_probs=74.0
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.|-||||.||.++.|+||.-+|++.|+|-+++++.| .+|.+||||||+|.+.++|++||+.||+..+-.|+.+.+.|+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 688999999999999999999999999999999999 6899999999999999999999999999988788666666665
Q ss_pred cC
Q 018554 181 AD 182 (354)
Q Consensus 181 a~ 182 (354)
++
T Consensus 163 an 164 (506)
T KOG0117|consen 163 AN 164 (506)
T ss_pred ec
Confidence 53
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=1.2e-11 Score=106.62 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=64.0
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
..+|||+||++.+|+++|+++|+.||+|++|+|++| +..+++|||+|+++++|+.|+ .|+|..+ .+ ..|.|..+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l-~d--~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATI-VD--QRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCee-CC--ceEEEEeC
Confidence 368999999999999999999999999999999988 344689999999999999999 6999875 44 45777654
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=2.3e-11 Score=86.79 Aligned_cols=73 Identities=41% Similarity=0.719 Sum_probs=63.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
+|+|+|||.++++++|+++|+.+|.|..+.+..+..+ +.+|+|||+|.+.++|..|++.+++.. +.+ +.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~-~~~--~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKE-LGG--RPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEe
Confidence 5899999999999999999999999999999998765 778999999999999999999998755 333 455443
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=3.7e-11 Score=85.68 Aligned_cols=74 Identities=43% Similarity=0.802 Sum_probs=65.9
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
+|+|++|+..+++++|+++|..||.|..+.+..+.....+++|||+|.+.++|..|++.+++.. ++| ..+.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~-~~~--~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKE-LGG--RPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEeC
Confidence 4899999999999999999999999999999998766778999999999999999999999976 555 5666653
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=8.2e-12 Score=96.59 Aligned_cols=80 Identities=26% Similarity=0.472 Sum_probs=71.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.-.|||.++....||++|.+.|..||+|+.|.+-.| ++|-.+|||+|+|++.++|++|++++||..+++ ..|.|.|
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~---q~v~VDw 148 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG---QNVSVDW 148 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC---CceeEEE
Confidence 447999999999999999999999999999999988 699999999999999999999999999988654 3678888
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
+-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 7433
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.27 E-value=1.2e-11 Score=116.90 Aligned_cols=88 Identities=25% Similarity=0.456 Sum_probs=78.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
+.+||||++++++||+|.++|+..|.|.+++++.| .+|+.|||+|++|.+.++|.+|++.|||.. +.| ++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~-~~g--r~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAE-FNG--RKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcc-cCC--ceEEeecc
Confidence 78999999999999999999999999999999999 589999999999999999999999999987 555 79999999
Q ss_pred CChHHHHHHHHH
Q 018554 182 DTEKERQARRAQ 193 (354)
Q Consensus 182 ~~~~~~~~~~~~ 193 (354)
...+.+...+..
T Consensus 96 ~~~~~~~~~~~~ 107 (435)
T KOG0108|consen 96 SNRKNAERSLAS 107 (435)
T ss_pred cccchhHHHHhh
Confidence 877665544433
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.25 E-value=3.3e-10 Score=101.85 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=125.0
Q ss_pred CCeEEEcCC--CCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 14 RVKLFVGQV--PKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 14 ~~~lfVg~L--p~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
...|.+.=| =.-+|-+.|..+....|+|..|.|++. +| -.|.|||++.+.|++|.++|||..+..| -+.|++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsG-CCTLKI 193 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSG-CCTLKI 193 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhccccccccc-ceeEEE
Confidence 333444433 367899999999999999999999885 23 2599999999999999999999987666 578899
Q ss_pred eccccccccc----------------------------------------------------------------------
Q 018554 92 KYADGELERL---------------------------------------------------------------------- 101 (354)
Q Consensus 92 ~~~~~~~~~~---------------------------------------------------------------------- 101 (354)
.|+++.+...
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 8886554321
Q ss_pred -------------cceEEEecCC-CCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 018554 102 -------------EHKLFIGMLP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 167 (354)
Q Consensus 102 -------------~~~l~V~~l~-~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 167 (354)
.+.+.|-+|. ..++-+.|.++|=.||.|++|++++.+ .|-|.|++.|..+.++|+..||+..
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~ 349 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIP 349 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCc
Confidence 3568888997 457788899999999999999999875 3579999999999999999999987
Q ss_pred ccCCCceeEEEEecC
Q 018554 168 KMEGSSVPLVVKWAD 182 (354)
Q Consensus 168 ~~~g~~~~l~v~~a~ 182 (354)
+ .|. +|.|.+.+
T Consensus 350 l-fG~--kl~v~~Sk 361 (494)
T KOG1456|consen 350 L-FGG--KLNVCVSK 361 (494)
T ss_pred c-ccc--eEEEeecc
Confidence 5 453 56666543
No 100
>smart00360 RRM RNA recognition motif.
Probab=99.24 E-value=3.9e-11 Score=84.79 Aligned_cols=69 Identities=45% Similarity=0.803 Sum_probs=60.8
Q ss_pred EecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 107 IGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 107 V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
|+||+..+++++|+++|+.||.|.++.+..+. ++.++++|||+|.+.++|.+|++.+++.. ++| ..|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~-~~~--~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKE-LDG--RPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCe-eCC--cEEEe
Confidence 57899999999999999999999999999885 58889999999999999999999999866 555 44544
No 101
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=6.7e-12 Score=123.82 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=139.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
..+...+++||+|||+..+++.+|+..|..+|.|.+|.|.+-+. ++..-|+||.|.+.+.+-.|...+.+..+..+
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g--- 441 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG--- 441 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccC---
Confidence 34667889999999999999999999999999999999877643 44445999999999999999888866554443
Q ss_pred cceeeccccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 018554 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 167 (354)
Q Consensus 88 ~l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 167 (354)
.+++.+... +....+.+||++|..++....|...|..||.|..|.+-.. .-|++|.|++...|+.|++.+.|..
T Consensus 442 ~~r~glG~~-kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap 515 (975)
T KOG0112|consen 442 THRIGLGQP-KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAP 515 (975)
T ss_pred ccccccccc-ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCc
Confidence 444444433 3444678999999999999999999999999999887754 4599999999999999999999987
Q ss_pred ccCCCceeEEEEecCChHH
Q 018554 168 KMEGSSVPLVVKWADTEKE 186 (354)
Q Consensus 168 ~~~g~~~~l~v~~a~~~~~ 186 (354)
+.+-.+++.|.||.....
T Consensus 516 -~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 516 -LGGPPRRLRVDLASPPGA 533 (975)
T ss_pred -CCCCCcccccccccCCCC
Confidence 777778899999987643
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=4.3e-11 Score=85.38 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=49.8
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 28 EAQLLAMFK----EFALVDEVN-IIKDKTT--RASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 28 e~~L~~~F~----~~G~v~~i~-i~~d~~t--g~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
+++|+++|+ +||.|.+|. |+.|+.+ ++++|||||+|.+.++|.+|++.||++. +.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~-~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY-FDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 678999998 999999996 7788777 8999999999999999999999999866 444
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.8e-11 Score=115.15 Aligned_cols=160 Identities=26% Similarity=0.427 Sum_probs=123.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc-----------C-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEF-----------A-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~-----------G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~ 78 (354)
....+.++|++|+..++++++..+|..- | .|..+.+-.++ .|||++|.+.++|..|+... +
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~~-~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMALD-G 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhccc-c
Confidence 4567889999999999999999999764 4 36677665554 49999999999999987542 2
Q ss_pred CccCCCCCccceee------------------------ccccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEE
Q 018554 79 KKTLPGASSPLQVK------------------------YADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134 (354)
Q Consensus 79 ~~~~~g~~~~l~v~------------------------~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i 134 (354)
.++.| .++++. +.........+++||++|+..+++++++++.+.||.+....+
T Consensus 245 -~~f~g--~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l 321 (500)
T KOG0120|consen 245 -IIFEG--RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL 321 (500)
T ss_pred -hhhCC--CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhee
Confidence 11222 222221 112222333678999999999999999999999999999999
Q ss_pred eeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCC
Q 018554 135 LRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (354)
Q Consensus 135 ~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 183 (354)
+.|. ++.++||||.+|.+......|+..|||..+ .+ ..|+|..|-.
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l-gd--~~lvvq~A~~ 368 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL-GD--KKLVVQRAIV 368 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhh-cC--ceeEeehhhc
Confidence 9994 689999999999999999999999999884 44 4677766543
No 104
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=3.4e-11 Score=107.33 Aligned_cols=76 Identities=36% Similarity=0.601 Sum_probs=69.6
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
...+|||++|...++|.||+++|.+||+|+.|.++.. ++||||+|.++++|+.|.+++-.+.+++| .+|.|.|
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G--~Rl~i~W 299 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVING--FRLKIKW 299 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecc--eEEEEEe
Confidence 3678999999999999999999999999999999975 67999999999999999988877787888 6899999
Q ss_pred cCC
Q 018554 181 ADT 183 (354)
Q Consensus 181 a~~ 183 (354)
+.+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 988
No 105
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=8.9e-11 Score=79.86 Aligned_cols=56 Identities=36% Similarity=0.740 Sum_probs=49.1
Q ss_pred HHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 119 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 119 l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
|+++|++||+|+++.+.++. +++|||+|.+.++|.+|++.|||.. +.| +.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~-~~g--~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQ-FNG--RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSE-ETT--EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEEEC
Confidence 68999999999999998764 5899999999999999999999987 555 68999885
No 106
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=1.7e-11 Score=106.68 Aligned_cols=72 Identities=33% Similarity=0.600 Sum_probs=65.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
.+|||||||.++++.+|+.+|++||+|.+++|+ |.|+||..++...|+.||+.|+|.. |+| +.|+|+-++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYt-Lhg--~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYT-LHG--VNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccce-ecc--eEEEEEecc
Confidence 479999999999999999999999999999999 5599999999999999999999976 676 677887776
Q ss_pred Ch
Q 018554 183 TE 184 (354)
Q Consensus 183 ~~ 184 (354)
.+
T Consensus 73 sK 74 (346)
T KOG0109|consen 73 SK 74 (346)
T ss_pred cc
Confidence 55
No 107
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.19 E-value=3e-11 Score=98.46 Aligned_cols=78 Identities=31% Similarity=0.469 Sum_probs=70.6
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..+|||+||+..++++.|.++|-+.|.|.++.|.+|+ ++..+|||||+|.++|+|+-|++.||.- .+-| ++|+|..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~V-kLYg--rpIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMV-KLYG--RPIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHH-HhcC--ceeEEEe
Confidence 5789999999999999999999999999999999995 7778999999999999999999999964 4555 6888887
Q ss_pred cC
Q 018554 181 AD 182 (354)
Q Consensus 181 a~ 182 (354)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 75
No 108
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.18 E-value=1.1e-10 Score=105.52 Aligned_cols=78 Identities=38% Similarity=0.735 Sum_probs=71.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+||++.+|+++|+++|..||.|..+.+..|+ ++.++|+|||+|.+.++|..|++.+++.. +.| +.|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~-~~~--~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE-LEG--RPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe-ECC--ceeEeec
Confidence 4899999999999999999999999999999999994 89999999999999999999999999876 555 6788888
Q ss_pred cC
Q 018554 181 AD 182 (354)
Q Consensus 181 a~ 182 (354)
+.
T Consensus 192 ~~ 193 (306)
T COG0724 192 AQ 193 (306)
T ss_pred cc
Confidence 54
No 109
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=4.9e-11 Score=97.28 Aligned_cols=79 Identities=24% Similarity=0.501 Sum_probs=67.7
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.+++|||+|||.++.+.||.++|.+||.|.+|.+-.... .-.||||+|++..+|+.||..-+|.. ++| ++|+|+|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYd-ydg--~rLRVEf 79 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYD-YDG--CRLRVEF 79 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccc-cCc--ceEEEEe
Confidence 368899999999999999999999999999998764321 14799999999999999999999977 777 6899998
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
+..-
T Consensus 80 prgg 83 (241)
T KOG0105|consen 80 PRGG 83 (241)
T ss_pred ccCC
Confidence 7543
No 110
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.16 E-value=4e-09 Score=98.39 Aligned_cols=145 Identities=20% Similarity=0.296 Sum_probs=107.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDE-VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~-i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
.....|-+++||+.|||+||.+||+-.-.|.+ |.+..|+. +++.|-|||+|++.+.|++|+..-+ ..+.. +-|.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhr--e~iGh--RYIE 175 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHR--ENIGH--RYIE 175 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHH--Hhhcc--ceEE
Confidence 46678999999999999999999998765655 45566654 7899999999999999999997521 11111 0010
Q ss_pred eecc-----------------------------------cccc-----cc------------------------------
Q 018554 91 VKYA-----------------------------------DGEL-----ER------------------------------ 100 (354)
Q Consensus 91 v~~~-----------------------------------~~~~-----~~------------------------------ 100 (354)
|-.+ ..+. .+
T Consensus 176 vF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~ 255 (510)
T KOG4211|consen 176 VFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGR 255 (510)
T ss_pred eehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccc
Confidence 0000 0000 00
Q ss_pred ------------------------ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHH
Q 018554 101 ------------------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 156 (354)
Q Consensus 101 ------------------------~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A 156 (354)
....++.++||+..++.++.++|+..-.+ .|.|.-..+++..|-|+|+|.+.++|
T Consensus 256 ~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~eda 334 (510)
T KOG4211|consen 256 DPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDA 334 (510)
T ss_pred ccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhh
Confidence 02568999999999999999999876444 77777778899999999999999999
Q ss_pred HHHHHH
Q 018554 157 LAALEA 162 (354)
Q Consensus 157 ~~Ai~~ 162 (354)
..|+.+
T Consensus 335 v~Amsk 340 (510)
T KOG4211|consen 335 VGAMGK 340 (510)
T ss_pred Hhhhcc
Confidence 999853
No 111
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.15 E-value=3.8e-11 Score=102.72 Aligned_cols=162 Identities=18% Similarity=0.339 Sum_probs=120.8
Q ss_pred CCCCeEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 12 EERVKLFVGQVPKHMTEAQ-L--LAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~-L--~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
.....+|++++-.++..+- | ...|+.+-.....+++++.. +.-++++|+.|.+...-.++-..-+++. +. ...
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kk-i~--~~~ 169 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKK-IG--KPP 169 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhcccccccc-cc--Ccc
Confidence 4556678888877776665 4 67788887777888888875 6778999999987766665544333333 11 122
Q ss_pred ceeec----cccc---cccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHH
Q 018554 89 LQVKY----ADGE---LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 89 l~v~~----~~~~---~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai 160 (354)
++..- -++. -.....+||+|.|..+++++.|...|.+|-.....++++| ++++++||+||-|.+..++..|+
T Consensus 170 VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 170 VRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred eeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHH
Confidence 33221 1221 1223568999999999999999999999999999999999 69999999999999999999999
Q ss_pred HHhCCCcccCCCceeEEEEe
Q 018554 161 EAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 161 ~~l~g~~~~~g~~~~l~v~~ 180 (354)
+++||+.+ .++.|.+..
T Consensus 250 rem~gkyV---gsrpiklRk 266 (290)
T KOG0226|consen 250 REMNGKYV---GSRPIKLRK 266 (290)
T ss_pred Hhhccccc---ccchhHhhh
Confidence 99999875 345665543
No 112
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.13 E-value=6.2e-11 Score=107.57 Aligned_cols=89 Identities=31% Similarity=0.394 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
...+||||+||.+++|++|+++|++||.|.++.++.|+.+.+.+||+||.|.+++++++++.. ..+.+.+ +.+.|+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~--~f~~~~g--k~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ--KFHDFNG--KKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc--ceeeecC--ceeeEe
Confidence 356999999999999999999999999999999999999999999999999999999999865 3344555 777777
Q ss_pred ccccccccccceE
Q 018554 93 YADGELERLEHKL 105 (354)
Q Consensus 93 ~~~~~~~~~~~~l 105 (354)
.+.++......+.
T Consensus 172 rA~pk~~~~~~~~ 184 (311)
T KOG4205|consen 172 RAIPKEVMQSTKS 184 (311)
T ss_pred eccchhhcccccc
Confidence 7777665554444
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=1.9e-10 Score=78.26 Aligned_cols=56 Identities=38% Similarity=0.681 Sum_probs=47.7
Q ss_pred HHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 31 LLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 31 L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
|+++|++||+|.+|.+.+++ +++|||+|.+.++|++|++.||+.. +.+ +.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~-~~g--~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQ-FNG--RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSE-ETT--EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEEEC
Confidence 78999999999999997765 5799999999999999999998877 555 67888764
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=2.1e-12 Score=126.83 Aligned_cols=150 Identities=21% Similarity=0.274 Sum_probs=126.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
.+..++||.||+..+.++||...|..+|.+..+++.--+++++.||+|+|+|.+.+++.+||..... .++ +
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~-~~~-g------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS-CFF-G------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh-hhh-h-------
Confidence 4567899999999999999999999999988888876677899999999999999999999976432 322 2
Q ss_pred eccccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCC
Q 018554 92 KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (354)
Q Consensus 92 ~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 171 (354)
..+|+|.|++...|.++|+.+|+.+|.+.++.++..+.|+.+|.++|.|.++.++.+++...+...+
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~--- 802 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGK--- 802 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhh---
Confidence 3569999999999999999999999999999999889999999999999999999999877666443
Q ss_pred CceeEEEEecCC
Q 018554 172 SSVPLVVKWADT 183 (354)
Q Consensus 172 ~~~~l~v~~a~~ 183 (354)
+...+.|...++
T Consensus 803 rE~~~~v~vsnp 814 (881)
T KOG0128|consen 803 RENNGEVQVSNP 814 (881)
T ss_pred hhcCccccccCC
Confidence 223455555554
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.09 E-value=4.4e-10 Score=80.13 Aligned_cols=60 Identities=20% Similarity=0.467 Sum_probs=50.4
Q ss_pred HHHHHHhhc----cCCCeeEEE-EeeC-CC--CCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 116 EAEVSALFS----IYGTIKDLQ-ILRG-SQ--QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 116 ~~~l~~~F~----~~G~v~~i~-i~~~-~~--~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
+++|+++|+ .||.|.+|. |+.+ .+ +.++|++||+|.+.++|.+|++.|||+. ++| +.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~-~~g--r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY-FDG--RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEe
Confidence 578888888 999999995 5555 34 7889999999999999999999999986 666 55654
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.7e-10 Score=102.91 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..+...|||..|.+-++++||.-+|+.||+|.+|.|++|+.||.+.-||||+|++.+++++|.-.+++.. +.. +.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL-IDD--rRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL-IDD--RRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee-ecc--ceEE
Confidence 4577899999999999999999999999999999999999999999999999999999999999997744 544 7888
Q ss_pred eecccc
Q 018554 91 VKYADG 96 (354)
Q Consensus 91 v~~~~~ 96 (354)
|.|++.
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 888754
No 117
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.06 E-value=1.7e-08 Score=90.12 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=66.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCC--CeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G--~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
..++|||||-|++|++||.+.+...| .+.+++++.++ +|.+||||+|...+..+..+.++.|-.+. +.|.. .+.+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~-iHGQ~-P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT-IHGQS-PTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce-ecCCC-Ceee
Confidence 45799999999999999999998877 58888999885 79999999999999999999999888876 66653 4455
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
.+-+..
T Consensus 158 ~~NK~~ 163 (498)
T KOG4849|consen 158 SYNKTN 163 (498)
T ss_pred ccchhh
Confidence 554443
No 118
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.00 E-value=4.9e-10 Score=101.39 Aligned_cols=168 Identities=18% Similarity=0.280 Sum_probs=129.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
...+++|++++.+++.+.++..++...|.+..+.+........++|++.|.|...+.+..|+.... ...+.+.....-+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~-~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESG-SKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhh-ccccccccccCcc
Confidence 468899999999999999999999999988888877777778899999999999999999997653 2222221111111
Q ss_pred ecccc-----cc----ccccceEE-EecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHH
Q 018554 92 KYADG-----EL----ERLEHKLF-IGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 92 ~~~~~-----~~----~~~~~~l~-V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai 160 (354)
..... .. .....++| |++|+.++++++|+.+|..+|.|..+++..+ .++..+|+++|.|.+...+..++
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 11111 11 11144555 9999999999999999999999999999987 58899999999999999999998
Q ss_pred HHhCCCcccCCCceeEEEEecCCh
Q 018554 161 EAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 161 ~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
.. .... +.+ +.+.+...+..
T Consensus 245 ~~-~~~~-~~~--~~~~~~~~~~~ 264 (285)
T KOG4210|consen 245 ND-QTRS-IGG--RPLRLEEDEPR 264 (285)
T ss_pred hc-ccCc-ccC--cccccccCCCC
Confidence 76 4443 444 56777776654
No 119
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.96 E-value=1.7e-09 Score=91.70 Aligned_cols=80 Identities=28% Similarity=0.521 Sum_probs=69.5
Q ss_pred cceEEEecCCCCCCHHHHHH----hhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSA----LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~----~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
..+|||.||.+.+..++|++ +|++||+|.+|..++ +.+.||.|||.|++.+.|..|+++|+|..+++ +.++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg---K~mr 83 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYG---KPMR 83 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccC---chhh
Confidence 34999999999999999988 999999999998884 45669999999999999999999999987543 5888
Q ss_pred EEecCChHH
Q 018554 178 VKWADTEKE 186 (354)
Q Consensus 178 v~~a~~~~~ 186 (354)
|.||..+..
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999876543
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.96 E-value=2.5e-09 Score=89.21 Aligned_cols=82 Identities=26% Similarity=0.383 Sum_probs=69.8
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEF-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~-G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
........-++|..||..+.+.++..+|.+| |.|..+++-|++.||.++|||||+|++++.|.-|-+.||+-. +.+
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL-l~e-- 119 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL-LME-- 119 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh-hhh--
Confidence 4455667779999999999999999999998 788888888999999999999999999999999999998754 444
Q ss_pred ccceee
Q 018554 87 SPLQVK 92 (354)
Q Consensus 87 ~~l~v~ 92 (354)
+.|.+.
T Consensus 120 ~lL~c~ 125 (214)
T KOG4208|consen 120 HLLECH 125 (214)
T ss_pred heeeeE
Confidence 344443
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-09 Score=97.09 Aligned_cols=87 Identities=20% Similarity=0.376 Sum_probs=76.7
Q ss_pred ccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCcee
Q 018554 97 ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (354)
Q Consensus 97 ~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~ 175 (354)
+....++.|||-.|..-+|++||.-+|+.||.|..+.|++| ++|.+-.||||+|++.+++++|.-+|++.. |+. ++
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL-IDD--rR 310 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL-IDD--RR 310 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee-ecc--ce
Confidence 33444789999999999999999999999999999999999 689999999999999999999999999865 554 78
Q ss_pred EEEEecCChHH
Q 018554 176 LVVKWADTEKE 186 (354)
Q Consensus 176 l~v~~a~~~~~ 186 (354)
|.|.|..+..+
T Consensus 311 IHVDFSQSVsk 321 (479)
T KOG0415|consen 311 IHVDFSQSVSK 321 (479)
T ss_pred EEeehhhhhhh
Confidence 99999876544
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=2.6e-09 Score=95.44 Aligned_cols=82 Identities=24% Similarity=0.482 Sum_probs=72.3
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
...++....+|||++|-..++|.||++.|.+||+|+.|.++..+ +||||+|.+.++|++|.+++-++.++.|
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G-- 292 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVING-- 292 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecc--
Confidence 44567788999999998899999999999999999999998754 4999999999999999998877777776
Q ss_pred ccceeecccc
Q 018554 87 SPLQVKYADG 96 (354)
Q Consensus 87 ~~l~v~~~~~ 96 (354)
..|+|.|..+
T Consensus 293 ~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 FRLKIKWGRP 302 (377)
T ss_pred eEEEEEeCCC
Confidence 8888888877
No 123
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=8.8e-09 Score=97.54 Aligned_cols=69 Identities=20% Similarity=0.375 Sum_probs=59.7
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~ 80 (354)
..+.+-..++|+|-|||..+++++|+++|+.||+|++|+.-+ ..+|.+||+|.|..+|+.|+++|++.+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~ 136 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRRE 136 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHH
Confidence 345567889999999999999999999999999999965544 356899999999999999999987554
No 124
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.88 E-value=1.9e-08 Score=75.54 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC-CCcccee
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKE--FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG-ASSPLQV 91 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~--~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g-~~~~l~v 91 (354)
+||.|+|||...|.++|.+++.+ .|...-+.+..|..++.+.|||||.|.+.+.|.+..+.++|+.+-.. ..+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999987 46778888999999999999999999999999999999999875322 2344555
Q ss_pred eccc
Q 018554 92 KYAD 95 (354)
Q Consensus 92 ~~~~ 95 (354)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6554
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.85 E-value=6.5e-09 Score=98.17 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...-.+.|||.+|+..+-..||+++|++||+|.-.+|+.+..+--.|+|+||++.+.++|.+||+.||... |.| +.|
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE-LHG--rmI 477 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE-LHG--RMI 477 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh-hcc--eee
Confidence 35567889999999999999999999999999999999987776788999999999999999999997655 555 556
Q ss_pred eeecc
Q 018554 90 QVKYA 94 (354)
Q Consensus 90 ~v~~~ 94 (354)
.|..+
T Consensus 478 SVEka 482 (940)
T KOG4661|consen 478 SVEKA 482 (940)
T ss_pred eeeec
Confidence 66554
No 126
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.81 E-value=6.7e-09 Score=89.12 Aligned_cols=80 Identities=24% Similarity=0.443 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
-+++..+||.|.|..+++++.|-..|.+|-.....++++|+.||+++||+||.|.|.+++..|+..++++-+ . .++|
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV-g--srpi 262 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV-G--SRPI 262 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc-c--cchh
Confidence 456788999999999999999999999999889999999999999999999999999999999999988764 2 3455
Q ss_pred eee
Q 018554 90 QVK 92 (354)
Q Consensus 90 ~v~ 92 (354)
++.
T Consensus 263 klR 265 (290)
T KOG0226|consen 263 KLR 265 (290)
T ss_pred Hhh
Confidence 444
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.79 E-value=1.7e-08 Score=84.31 Aligned_cols=80 Identities=26% Similarity=0.419 Sum_probs=68.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhccC-CCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIY-GTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~-G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|..++.-+.+.++..+|.+| |.|..+++-|+ ++|.|+|||||+|++++.|.-|.+.||+.. +.+ ..|.|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL-l~e--~lL~c~ 125 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL-LME--HLLECH 125 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh-hhh--heeeeE
Confidence 5678999999999999999999888 67888888787 699999999999999999999999999975 555 456666
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 65554
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.78 E-value=9.3e-08 Score=86.57 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=109.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...++.-|-.++|||.-++.+|..+|.-.-.+.-...+.....|+..|++.|.|.|.|.-+.|++. .+..+.. +.+
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR--hkhh~g~--ryi 131 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR--HKHHMGT--RYI 131 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh--hhhhccC--Cce
Confidence 344566677889999999999999998653333333333334477779999999999999999987 3343333 445
Q ss_pred eeeccccccc-----------------cccceEEEecCCCCCCHHHHHHhhccC----CCeeEEEEeeCCCCCcceEEEE
Q 018554 90 QVKYADGELE-----------------RLEHKLFIGMLPKNVSEAEVSALFSIY----GTIKDLQILRGSQQTSKGCAFL 148 (354)
Q Consensus 90 ~v~~~~~~~~-----------------~~~~~l~V~~l~~~~t~~~l~~~F~~~----G~v~~i~i~~~~~~~~~g~afV 148 (354)
.|-.+..+.- ...-.|-+++||+++++.|+.++|... |.++.|-+++..+|+..|-|||
T Consensus 132 evYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 132 EVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred eeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 4443322110 112357889999999999999999632 3567788888788999999999
Q ss_pred EeCCHHHHHHHHHHh
Q 018554 149 KYETKEQALAALEAI 163 (354)
Q Consensus 149 ~f~~~~~A~~Ai~~l 163 (354)
.|..+++|+.|+.+-
T Consensus 212 lfa~ee~aq~aL~kh 226 (508)
T KOG1365|consen 212 LFACEEDAQFALRKH 226 (508)
T ss_pred EecCHHHHHHHHHHH
Confidence 999999999999753
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.77 E-value=1e-09 Score=100.11 Aligned_cols=152 Identities=24% Similarity=0.409 Sum_probs=118.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeec
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~-v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~ 93 (354)
.+||++||...++.+||..+|...-. ...-.+++ .||+||.+.|...|.+|++.++++..+.| +.+.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqG--kr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQG--KRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcC--ceeeccc
Confidence 57999999999999999999986411 11111222 36999999999999999999999888877 6777776
Q ss_pred cccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc
Q 018554 94 ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (354)
Q Consensus 94 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 173 (354)
...++.+ ++++-|.|++..+.++.|..+..+||.|+.+..+... ......-|+|.+.+.+..||..|+|..+ +.
T Consensus 73 sv~kkqr-srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~--~etavvnvty~~~~~~~~ai~kl~g~Q~-en-- 146 (584)
T KOG2193|consen 73 SVPKKQR-SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD--SETAVVNVTYSAQQQHRQAIHKLNGPQL-EN-- 146 (584)
T ss_pred hhhHHHH-hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc--hHHHHHHHHHHHHHHHHHHHHhhcchHh-hh--
Confidence 6665554 5679999999999999999999999999998775322 1234456899999999999999999774 43
Q ss_pred eeEEEEec
Q 018554 174 VPLVVKWA 181 (354)
Q Consensus 174 ~~l~v~~a 181 (354)
..+.|.|-
T Consensus 147 ~~~k~~Yi 154 (584)
T KOG2193|consen 147 QHLKVGYI 154 (584)
T ss_pred hhhhcccC
Confidence 34566654
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.75 E-value=3.2e-08 Score=86.57 Aligned_cols=81 Identities=22% Similarity=0.399 Sum_probs=71.7
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
+..+.+|+|.||+..|+++||+++|+.||.++.+.+..++.|.+.|+|-|.|+..++|.+|++.+|+ ..++|.. +.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~~--mk~ 156 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALDGRP--MKI 156 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccCCce--eee
Confidence 3445789999999999999999999999999999999999999999999999999999999999999 5588854 555
Q ss_pred EecC
Q 018554 179 KWAD 182 (354)
Q Consensus 179 ~~a~ 182 (354)
....
T Consensus 157 ~~i~ 160 (243)
T KOG0533|consen 157 EIIS 160 (243)
T ss_pred EEec
Confidence 5443
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.74 E-value=2.2e-08 Score=94.68 Aligned_cols=78 Identities=18% Similarity=0.367 Sum_probs=69.4
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||.+|...+...||+++|++||.|+-.+|+.+ ++.-.++|+||++.+.++|.+||+.|+.+. |.| +.|.|..
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE-LHG--rmISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE-LHG--RMISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh-hcc--eeeeeee
Confidence 578999999999999999999999999999999988 555569999999999999999999999887 555 6777777
Q ss_pred cC
Q 018554 181 AD 182 (354)
Q Consensus 181 a~ 182 (354)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 64
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.61 E-value=1.7e-07 Score=82.10 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.+...++|+|.||+..++++||+++|++||.++.+.|-.|+. |++.|.|=|.|...++|+.|++.+++ ..+.+ +.+
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG--~~m 154 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNG-VALDG--RPM 154 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcC-cccCC--cee
Confidence 445568899999999999999999999999999998888885 99999999999999999999999998 44666 556
Q ss_pred eeeccc
Q 018554 90 QVKYAD 95 (354)
Q Consensus 90 ~v~~~~ 95 (354)
++....
T Consensus 155 k~~~i~ 160 (243)
T KOG0533|consen 155 KIEIIS 160 (243)
T ss_pred eeEEec
Confidence 665443
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.59 E-value=8.7e-08 Score=90.47 Aligned_cols=65 Identities=23% Similarity=0.329 Sum_probs=55.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~ 75 (354)
.....+|||+|||.++++++|+++|..||.|+...|......++..+||||+|.+.+++..||++
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 34455699999999999999999999999999988766442244448999999999999999988
No 134
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.58 E-value=2.7e-07 Score=89.43 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=63.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCe-eEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTI-KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v-~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
+.|-|.|+|.+++-+||.++|..|-.+ .+|.+.++..|...|-|.|.|++.++|.+|.+.|+++.+ .. +.|.+.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i-~n--r~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKI-RN--RVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcc-cc--eeEEEE
Confidence 378999999999999999999999754 567777778899999999999999999999999999885 33 445443
No 135
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.55 E-value=2.3e-07 Score=78.30 Aligned_cols=86 Identities=26% Similarity=0.383 Sum_probs=67.3
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEee-C-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR-G-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~-~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
.++|||.+||.++...||..+|..|---+...+.. + ....-+-+||++|.+.++|+.|+.+|||..+--.....|+++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 68999999999999999999998886555544433 2 233445799999999999999999999976443445678888
Q ss_pred ecCChHHH
Q 018554 180 WADTEKER 187 (354)
Q Consensus 180 ~a~~~~~~ 187 (354)
+|+...++
T Consensus 114 lAKSNtK~ 121 (284)
T KOG1457|consen 114 LAKSNTKR 121 (284)
T ss_pred ehhcCccc
Confidence 88766444
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.50 E-value=1.5e-07 Score=82.64 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=71.8
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.+.+||+|+...++.+++...|+.||.|..|.|..|+.++.++||+||+|.+.+.+++|+. |++.. +.+ .
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~-i~~--~ 170 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE-IPG--P 170 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc-ccc--c
Confidence 4567789999999999999999999999999999999999999999999999999999999999998 77766 444 4
Q ss_pred cceeec
Q 018554 88 PLQVKY 93 (354)
Q Consensus 88 ~l~v~~ 93 (354)
.+.+.+
T Consensus 171 ~i~vt~ 176 (231)
T KOG4209|consen 171 AIEVTL 176 (231)
T ss_pred cceeee
Confidence 454443
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=4.8e-08 Score=82.11 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=68.5
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
+++|||+|+...++||-|.++|.+-|.|.++.|..++.++.+ ||||.|+++.+..-|++.+||.. +.+....++....
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~-l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDD-LEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccch-hccchhhcccccC
Confidence 578999999999999999999999999999999998888877 99999999999999999999976 5554444544444
Q ss_pred C
Q 018554 182 D 182 (354)
Q Consensus 182 ~ 182 (354)
.
T Consensus 87 ~ 87 (267)
T KOG4454|consen 87 N 87 (267)
T ss_pred C
Confidence 4
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.48 E-value=3.6e-07 Score=88.55 Aligned_cols=162 Identities=11% Similarity=0.052 Sum_probs=116.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..+.+.+-+.+.+.+.++.|+++||... .|..+.|..+...+--.|-++|+|....++.+|++.- ..... .+.++
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn--~~~~~--~R~~q 382 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRN--PSDDV--NRPFQ 382 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcC--chhhh--hccee
Confidence 3567778888999999999999999753 3556667777664444799999999999999998762 11111 12333
Q ss_pred eecccccc----------------------------------------ccccceEEEecCCCCCCHHHHHHhhccCCCee
Q 018554 91 VKYADGEL----------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130 (354)
Q Consensus 91 v~~~~~~~----------------------------------------~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~ 130 (354)
+..+-... ......|||..||..+++.++.+.|..--.|+
T Consensus 383 ~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ve 462 (944)
T KOG4307|consen 383 TGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVE 462 (944)
T ss_pred ecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhh
Confidence 32110000 00145899999999999999999998777777
Q ss_pred E-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 131 D-LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 131 ~-i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
+ |.|-+..+++.++.|||.|..++++.+|...-+. + +-| .+.|+|.-
T Consensus 463 d~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k-~-y~G-~r~irv~s 510 (944)
T KOG4307|consen 463 DFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTK-F-YPG-HRIIRVDS 510 (944)
T ss_pred heeEeccCCcccccchhhheeccccccchhhhcccc-c-ccC-ceEEEeec
Confidence 7 7777778888899999999999999888754333 3 333 35666654
No 139
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.44 E-value=4.5e-05 Score=68.64 Aligned_cols=73 Identities=16% Similarity=0.313 Sum_probs=63.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G--~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
......+|||||-|.+|++||.+.+...| .+.+++.+.++.+|.+||||.|...+..++++.++.|-.+. +.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~-iHG 151 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT-IHG 151 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce-ecC
Confidence 44566799999999999999999998877 47889999999999999999999999999999999885444 555
No 140
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=1.8e-07 Score=80.09 Aligned_cols=72 Identities=32% Similarity=0.585 Sum_probs=64.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
.++||++|++.+.+.+|.++|..||.|.++.+. .+|+||+|++..+|..|+..||++. +.+. .+.|.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~-l~~e--~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKE-LCGE--RLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCce-ecce--eeeeeccc
Confidence 469999999999999999999999999999988 6799999999999999999999987 5553 38888876
Q ss_pred Ch
Q 018554 183 TE 184 (354)
Q Consensus 183 ~~ 184 (354)
..
T Consensus 72 ~~ 73 (216)
T KOG0106|consen 72 GK 73 (216)
T ss_pred cc
Confidence 43
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.40 E-value=6.7e-07 Score=78.48 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=71.5
Q ss_pred cccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCce
Q 018554 96 GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (354)
Q Consensus 96 ~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~ 174 (354)
.+.+.....+||+|+...+|.+++..+|+.||.|..+.|..|+ .+.+|+|+||+|.+.+.+++|+. ||+.. +.+ .
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~-i~~--~ 170 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE-IPG--P 170 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc-ccc--c
Confidence 3445557889999999999999999999999999999999985 56789999999999999999998 99987 555 5
Q ss_pred eEEEEecC
Q 018554 175 PLVVKWAD 182 (354)
Q Consensus 175 ~l~v~~a~ 182 (354)
.+.|.+..
T Consensus 171 ~i~vt~~r 178 (231)
T KOG4209|consen 171 AIEVTLKR 178 (231)
T ss_pred cceeeeee
Confidence 77777654
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.38 E-value=4e-06 Score=79.33 Aligned_cols=76 Identities=25% Similarity=0.358 Sum_probs=62.4
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
...|||+|||.++++++|+++|..||.|+...|.... .++..+|+||+|++.++++.||++- ...+++ ++|.|+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As--p~~ig~--~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS--PLEIGG--RKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC--ccccCC--eeEEEEe
Confidence 3469999999999999999999999999998887643 4555599999999999999999874 344555 6777775
Q ss_pred c
Q 018554 181 A 181 (354)
Q Consensus 181 a 181 (354)
.
T Consensus 364 k 364 (419)
T KOG0116|consen 364 K 364 (419)
T ss_pred c
Confidence 3
No 143
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.36 E-value=1.3e-06 Score=78.51 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=69.5
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeE--------EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKD--------LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~--------i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 173 (354)
...|||.|||.++|.+++.++|++||.|.. |++.++..|.-+|=|+|.|-.+++..-|++.|++.. +.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~-~rg-- 210 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE-LRG-- 210 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc-ccC--
Confidence 456999999999999999999999998654 789999999999999999999999999999999987 445
Q ss_pred eeEEEEecC
Q 018554 174 VPLVVKWAD 182 (354)
Q Consensus 174 ~~l~v~~a~ 182 (354)
+.|+|..|+
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 678888773
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=5.4e-06 Score=62.28 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=67.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhccC--CCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccC-CCceeEEE
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIY--GTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVV 178 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~--G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~-g~~~~l~v 178 (354)
++|-|+|+|...|.++|.+++... |...-+-+.-| .+..+.|||||.|.+.+.|.+..+.++|+..-. .+.+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998543 55666777777 577789999999999999999999999987421 24567789
Q ss_pred EecCChHH
Q 018554 179 KWADTEKE 186 (354)
Q Consensus 179 ~~a~~~~~ 186 (354)
.||+-...
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 98865543
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=5.4e-07 Score=85.63 Aligned_cols=65 Identities=25% Similarity=0.436 Sum_probs=58.3
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 168 (354)
....+|+|-||+..|++++|+++|+.||+|+.|+..+. .++.+||+|.|..+|++|+++||+.++
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 34689999999999999999999999999999765544 378999999999999999999999884
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.22 E-value=2e-06 Score=83.73 Aligned_cols=79 Identities=19% Similarity=0.447 Sum_probs=68.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCC----CcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ----TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
.++|||+||+..++++.|...|..||.|..++|+..++. ..+.|+||-|-++.+|++|++.|+|..+ ....++
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---~~~e~K 250 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---MEYEMK 250 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---eeeeee
Confidence 679999999999999999999999999999999987542 3458999999999999999999999775 336788
Q ss_pred EEecCC
Q 018554 178 VKWADT 183 (354)
Q Consensus 178 v~~a~~ 183 (354)
+-|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 888754
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.14 E-value=1.4e-05 Score=57.37 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=47.0
Q ss_pred ceEEEecCCCCCCHHH----HHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 103 HKLFIGMLPKNVSEAE----VSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~----l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
..|+|.|||.+.+... |+++++.+| .|..|. .+.|.|.|.+.+.|.+|.+.|+|..+++ .+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG---~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFG---NKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSS---S--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhccccccc---ceEE
Confidence 4689999999888665 667888886 676653 4679999999999999999999988544 3789
Q ss_pred EEecCCh
Q 018554 178 VKWADTE 184 (354)
Q Consensus 178 v~~a~~~ 184 (354)
|++....
T Consensus 71 v~~~~~~ 77 (90)
T PF11608_consen 71 VSFSPKN 77 (90)
T ss_dssp EESS--S
T ss_pred EEEcCCc
Confidence 9987443
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.10 E-value=1.7e-05 Score=61.01 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=39.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
+.|+|.++...++.++|++.|+.||.|..|.+.+. ...|+|.|.+.++|++|++.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHh
Confidence 46889999999999999999999999999999876 34799999999999999987743
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.03 E-value=7.6e-06 Score=79.84 Aligned_cols=82 Identities=23% Similarity=0.423 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~t---g~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
+.-.+.|||+||+..++|+.|...|..||+|..|+|+.-+.- .+.+-|+||.|-+..+|+.|++.|++..+ . ..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv-~--~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV-M--EY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee-e--ee
Confidence 456788999999999999999999999999999999976542 34567999999999999999999988654 2 35
Q ss_pred cceeeccc
Q 018554 88 PLQVKYAD 95 (354)
Q Consensus 88 ~l~v~~~~ 95 (354)
.+++.|.+
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 66666653
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.03 E-value=2.4e-06 Score=77.86 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=102.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCC---CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT---TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~---tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
...|-|.||...+|.+++..+|.-.|+|.++.|+.... -......|||.|.|..++..|-. |.+..+++...+.+-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 34899999999999999999999999999999987432 12345689999999988877643 323332322100000
Q ss_pred e------------------------------------------------------eccccccccccceEEEecCCCCCCH
Q 018554 91 V------------------------------------------------------KYADGELERLEHKLFIGMLPKNVSE 116 (354)
Q Consensus 91 v------------------------------------------------------~~~~~~~~~~~~~l~V~~l~~~~t~ 116 (354)
+ .++..+.+...++++|.+|...+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 0 0001111122567999999999999
Q ss_pred HHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 018554 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (354)
Q Consensus 117 ~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 163 (354)
.++-+.|..+|+|....+-.... .-+|-|.|....+...|++..
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~---s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSR---SSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCC---CcchhhhHhhhhhHHHHHHhc
Confidence 99999999999998876654322 346779999888888888753
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.02 E-value=8e-06 Score=74.02 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=75.4
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--------EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~--------~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~ 79 (354)
..+.....+|||.+|+..+++++|.++|.++|.|. .|+|-+|+.|++.+|-|.|.|+|...|+.||+-++++
T Consensus 60 ~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 60 MADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 34467788999999999999999999999999876 5888899999999999999999999999999999888
Q ss_pred ccCCCCCccceeeccccc
Q 018554 80 KTLPGASSPLQVKYADGE 97 (354)
Q Consensus 80 ~~~~g~~~~l~v~~~~~~ 97 (354)
.+ .+ ..|+|..+...
T Consensus 140 df-~g--n~ikvs~a~~r 154 (351)
T KOG1995|consen 140 DF-CG--NTIKVSLAERR 154 (351)
T ss_pred cc-cC--CCchhhhhhhc
Confidence 74 44 67777766543
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.91 E-value=2.8e-05 Score=59.78 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=39.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~ 78 (354)
+-|+|.++..+++.++|++.|+.||.|..|.+.+... -|||.|.+.++|++|++++..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHh
Confidence 4688999999999999999999999999998876443 799999999999999998753
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.83 E-value=4.7e-05 Score=50.72 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=42.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai 73 (354)
++.|-|.|.+.+..+. +.+.|..||+|..+.+-.+.+ +.+|+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 3678899998886655 555888999999988763333 8999999999999985
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.78 E-value=0.00016 Score=51.98 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=44.6
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHhhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 15 VKLFVGQVPKHMTEAQLLA----MFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~----~F~~~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
..|+|.|||-+.+...|+. +++.+| +|.+| +.+.|+|.|.+.+.|++|.+.+++..++ | ..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVf-G--~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVF-G--NKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SS-S--S--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccc-c--ceE
Confidence 4699999999998876654 555676 67776 2357999999999999999999887754 3 567
Q ss_pred eeeccc
Q 018554 90 QVKYAD 95 (354)
Q Consensus 90 ~v~~~~ 95 (354)
.|++..
T Consensus 70 ~v~~~~ 75 (90)
T PF11608_consen 70 SVSFSP 75 (90)
T ss_dssp EEESS-
T ss_pred EEEEcC
Confidence 777653
No 155
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.71 E-value=8e-05 Score=49.57 Aligned_cols=52 Identities=27% Similarity=0.491 Sum_probs=42.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai 160 (354)
+.|-|.+.+.+..+ +|..+|..||+|.++.+... ..+.+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 45778888877554 46669999999999888733 558999999999999985
No 156
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.71 E-value=3.2e-05 Score=70.29 Aligned_cols=86 Identities=21% Similarity=0.348 Sum_probs=70.6
Q ss_pred ccCCCCCCeEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 8 KKSSEERVKLF-VGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 8 ~~~~~~~~~lf-Vg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
+.......++| |++|+.++++++|+..|..+|.|..+++..+..++.++||++|+|.+..++..++.. .... +.+
T Consensus 178 ~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~-~~~-- 253 (285)
T KOG4210|consen 178 RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRS-IGG-- 253 (285)
T ss_pred ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCc-ccC--
Confidence 44455566666 999999999999999999999999999999999999999999999999999999875 3333 444
Q ss_pred ccceeeccccc
Q 018554 87 SPLQVKYADGE 97 (354)
Q Consensus 87 ~~l~v~~~~~~ 97 (354)
+++.+.+.+..
T Consensus 254 ~~~~~~~~~~~ 264 (285)
T KOG4210|consen 254 RPLRLEEDEPR 264 (285)
T ss_pred cccccccCCCC
Confidence 66666665544
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=9e-05 Score=70.80 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=60.6
Q ss_pred CCCCCCeEEEcCCCCCC--C----HHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 10 SSEERVKLFVGQVPKHM--T----EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~--t----e~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
++.-...|+|-|+|.-- . ..-|.++|+++|+|....+..|..+| ++||.|++|.+..+|++|++.|||+.+..
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 34567789999998532 2 23466789999999999988888755 99999999999999999999999988655
Q ss_pred C
Q 018554 84 G 84 (354)
Q Consensus 84 g 84 (354)
.
T Consensus 133 n 133 (698)
T KOG2314|consen 133 N 133 (698)
T ss_pred c
Confidence 4
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.62 E-value=0.00017 Score=64.82 Aligned_cols=81 Identities=22% Similarity=0.471 Sum_probs=63.4
Q ss_pred cceEEEecCCCCCCHHH----H--HHhhccCCCeeEEEEeeCC-CCCc-ce--EEEEEeCCHHHHHHHHHHhCCCcccCC
Q 018554 102 EHKLFIGMLPKNVSEAE----V--SALFSIYGTIKDLQILRGS-QQTS-KG--CAFLKYETKEQALAALEAINGKHKMEG 171 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~----l--~~~F~~~G~v~~i~i~~~~-~~~~-~g--~afV~f~~~~~A~~Ai~~l~g~~~~~g 171 (354)
.+-+||-+|+..+..|+ | .++|.+||.|..|.|-+.. ...+ .+ -.+|+|.+.|+|.+||.+++|.. ++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~-~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL-LDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc-ccC
Confidence 34579999998888777 2 4899999999999887753 2111 12 24999999999999999999976 888
Q ss_pred CceeEEEEecCChH
Q 018554 172 SSVPLVVKWADTEK 185 (354)
Q Consensus 172 ~~~~l~v~~a~~~~ 185 (354)
+.|+..+..++.
T Consensus 193 --r~lkatYGTTKY 204 (480)
T COG5175 193 --RVLKATYGTTKY 204 (480)
T ss_pred --ceEeeecCchHH
Confidence 688888887654
No 159
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00021 Score=67.88 Aligned_cols=68 Identities=26% Similarity=0.382 Sum_probs=62.0
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~-~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~ 75 (354)
...-+..+|||||+||.-++.++|..+|+. ||.|..+-|=.|..-+-.+|-|=|+|.+..+-.+||++
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 345678899999999999999999999994 99999999999966688999999999999999999986
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.57 E-value=5.7e-05 Score=68.60 Aligned_cols=79 Identities=29% Similarity=0.396 Sum_probs=67.1
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeE--------EEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCC
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKD--------LQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~--------i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~ 172 (354)
..+|||-+|+..+++++|.++|.++|.|.. |.|.+| .++..|+-|.|.|+|...|+.||+-++++.+ .+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf-~g- 143 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF-CG- 143 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc-cC-
Confidence 568999999999999999999999998754 566677 5889999999999999999999999999885 43
Q ss_pred ceeEEEEecCC
Q 018554 173 SVPLVVKWADT 183 (354)
Q Consensus 173 ~~~l~v~~a~~ 183 (354)
-.|+|.+|..
T Consensus 144 -n~ikvs~a~~ 153 (351)
T KOG1995|consen 144 -NTIKVSLAER 153 (351)
T ss_pred -CCchhhhhhh
Confidence 4677776643
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.56 E-value=9.1e-05 Score=68.58 Aligned_cols=67 Identities=28% Similarity=0.451 Sum_probs=56.7
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC---CC---C-C-------cceEEEEEeCCHHHHHHHHHHhCCC
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG---SQ---Q-T-------SKGCAFLKYETKEQALAALEAINGK 166 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~---~~---~-~-------~~g~afV~f~~~~~A~~Ai~~l~g~ 166 (354)
..++|.+-|||.+-.-|.|.++|..+|.|..|+|+.. .. + . .+-||+|+|+..+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 3789999999999999999999999999999999875 11 1 1 2478999999999999999988654
Q ss_pred c
Q 018554 167 H 167 (354)
Q Consensus 167 ~ 167 (354)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 162
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=9.1e-06 Score=81.00 Aligned_cols=149 Identities=25% Similarity=0.208 Sum_probs=106.9
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEeeCCCCCCccc-EEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 13 ERVKLFVGQVPKHMTEA-QLLAMFKEFALVDEVNIIKDKTTRASRG-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~-~L~~~F~~~G~v~~i~i~~d~~tg~~~G-~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....+.+.++.....+. .++..|..+|.|+.|++..... +.... +.++++....+++.|...- ++. +.+ +...
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~-k~h~q~~~~~~~s~~~~~esat~pa-~~~-~a~--~~~a 644 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGF-KAHEQPQQQKVQSKHGSAESATVPA-GGA-LAN--RSAA 644 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccc-cccccchhhhhhccccchhhccccc-ccc-cCC--cccc
Confidence 44556677776665555 6778888999999998866322 22333 8899999999999887653 222 222 3333
Q ss_pred eecccccc-----------ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEe-eCCCCCcceEEEEEeCCHHHHHH
Q 018554 91 VKYADGEL-----------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL-RGSQQTSKGCAFLKYETKEQALA 158 (354)
Q Consensus 91 v~~~~~~~-----------~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~-~~~~~~~~g~afV~f~~~~~A~~ 158 (354)
+..++.+. .+..+++||.||+..+.++||+..|..+|.++.++|. ....+.-||+|++.|.+.+++.+
T Consensus 645 v~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 645 VGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred CCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 33332221 1235678999999999999999999999988887776 33567779999999999999999
Q ss_pred HHHHhCCC
Q 018554 159 ALEAINGK 166 (354)
Q Consensus 159 Ai~~l~g~ 166 (354)
||...+..
T Consensus 725 aV~f~d~~ 732 (881)
T KOG0128|consen 725 AVAFRDSC 732 (881)
T ss_pred hhhhhhhh
Confidence 99766654
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.39 E-value=0.00074 Score=51.15 Aligned_cols=78 Identities=27% Similarity=0.339 Sum_probs=51.0
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEE-EeeC-------CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ-ILRG-------SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~-i~~~-------~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 173 (354)
++-|.|=+.|.. ....|.++|++||+|.+.. +.++ ..........|+|+++.+|.+||.+ ||+. ++|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i-~~g~- 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTI-FSGS- 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEE-ETTC-
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeE-EcCc-
Confidence 355788888888 5556778999999987764 1111 0011246889999999999999974 8865 6664
Q ss_pred eeEEEEecCC
Q 018554 174 VPLVVKWADT 183 (354)
Q Consensus 174 ~~l~v~~a~~ 183 (354)
+.+-|++.+.
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 6678888753
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.36 E-value=0.00044 Score=60.10 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCccCCCCCccceeeccccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEE
Q 018554 68 EADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAF 147 (354)
Q Consensus 68 ~A~~Ai~~l~~~~~~~g~~~~l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~af 147 (354)
-|..|...|++.. .. .+.++|.|+-. ..|||.||..-+.-|.|.+.|+.||.|+...+.-|..++..+-++
T Consensus 6 ~ae~ak~eLd~~~-~~--~~~lr~rfa~~------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~ 76 (275)
T KOG0115|consen 6 LAEIAKRELDGRF-PK--GRSLRVRFAMH------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGI 76 (275)
T ss_pred HHHHHHHhcCCCC-CC--CCceEEEeecc------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccch
Confidence 4556666775533 44 48899998865 359999999999999999999999999998888887777888999
Q ss_pred EEeCCHHHHHHHHHHhCC
Q 018554 148 LKYETKEQALAALEAING 165 (354)
Q Consensus 148 V~f~~~~~A~~Ai~~l~g 165 (354)
|.|...-.|.+|++..+.
T Consensus 77 v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 77 VEFAKKPNARKAARRCRE 94 (275)
T ss_pred hhhhcchhHHHHHHHhcc
Confidence 999999999999987743
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00043 Score=66.31 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=60.2
Q ss_pred cceEEEecCCCC--CC----HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCcee
Q 018554 102 EHKLFIGMLPKN--VS----EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (354)
Q Consensus 102 ~~~l~V~~l~~~--~t----~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~ 175 (354)
...|+|.|+|.- .. ...|..+|+++|+|..+.+..+..|..+||.|++|.+..+|+.|++.|||+.+...+ .
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH--t 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH--T 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc--e
Confidence 467889998842 11 234678999999999999998877778999999999999999999999998843332 4
Q ss_pred EEEE
Q 018554 176 LVVK 179 (354)
Q Consensus 176 l~v~ 179 (354)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 4444
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.27 E-value=0.00029 Score=65.30 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=57.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeC---CCC--CC--------cccEEEEEeCCHHHHHHHHHHhc
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD---KTT--RA--------SRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d---~~t--g~--------~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
.-..++|.+-|||.|-.-+.|.++|..+|.|..|+|..- ... +. .+-||||+|...+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 348899999999999999999999999999999998765 111 11 25689999999999999999885
Q ss_pred C
Q 018554 78 N 78 (354)
Q Consensus 78 ~ 78 (354)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.26 E-value=0.00023 Score=61.73 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=59.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC--------CCccc----EEEEEeCCHHHHHHHHHHhcCCc
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT--------RASRG----CCFVICPSRQEADKAVNACHNKK 80 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~t--------g~~~G----~aFV~f~~~~~A~~Ai~~l~~~~ 80 (354)
..--||+++||+.++-.-|+++|+.||+|-.|.+-....+ |.+.. -|.|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5577999999999999999999999999999998876655 23322 27899999999999999999877
Q ss_pred cCC
Q 018554 81 TLP 83 (354)
Q Consensus 81 ~~~ 83 (354)
+..
T Consensus 153 Igg 155 (278)
T KOG3152|consen 153 IGG 155 (278)
T ss_pred cCC
Confidence 433
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.24 E-value=0.00066 Score=51.40 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=50.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-EeeCCC------CCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVN-IIKDKT------TRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~-i~~d~~------tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
....+.|.|-+.|.. ....|.+.|++||.|.+.. +.++.. .-.......|+|++..+|.+||.. +..++.
T Consensus 3 ~~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG~i~~ 79 (100)
T PF05172_consen 3 QDSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NGTIFS 79 (100)
T ss_dssp -GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TTEEET
T ss_pred CcCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CCeEEc
Confidence 446678999999988 6778889999999988764 111100 011234899999999999999976 445455
Q ss_pred CCCccceeecccc
Q 018554 84 GASSPLQVKYADG 96 (354)
Q Consensus 84 g~~~~l~v~~~~~ 96 (354)
+ ..-+-|.+.+.
T Consensus 80 g-~~mvGV~~~~~ 91 (100)
T PF05172_consen 80 G-SLMVGVKPCDP 91 (100)
T ss_dssp T-CEEEEEEE-HH
T ss_pred C-cEEEEEEEcHH
Confidence 4 24455665543
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.02 E-value=0.0018 Score=56.32 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=57.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~ 79 (354)
..|+|.||..-++-|.|..-|+.||+|+...++-|.. ++..+-++|+|...-.|.+|++.+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhccC
Confidence 6799999999999999999999999999887777754 788889999999999999999987433
No 170
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.00 E-value=0.0011 Score=61.45 Aligned_cols=79 Identities=27% Similarity=0.393 Sum_probs=59.9
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
++||++||...++..||+.+|...-.-..-.++-. .||+||.+.+...|.+|++.++|+.-+.| .++.|...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqG--kr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQG--KRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcC--ceeeccchh
Confidence 47999999999999999999965421111112211 58999999999999999999999877777 577887766
Q ss_pred ChHHHH
Q 018554 183 TEKERQ 188 (354)
Q Consensus 183 ~~~~~~ 188 (354)
.++.+.
T Consensus 75 ~kkqrs 80 (584)
T KOG2193|consen 75 PKKQRS 80 (584)
T ss_pred hHHHHh
Confidence 665543
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.00 E-value=0.0017 Score=58.47 Aligned_cols=105 Identities=10% Similarity=0.296 Sum_probs=69.0
Q ss_pred CeEEEcCCCCCCCHHH----H--HHHHhhcCCeeEEEEeeCCCC-CCcccEE--EEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 15 VKLFVGQVPKHMTEAQ----L--LAMFKEFALVDEVNIIKDKTT-RASRGCC--FVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~----L--~~~F~~~G~v~~i~i~~d~~t-g~~~G~a--FV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
.-+||-+|+..+..|+ | .++|.+||+|..|.|-+.... ....+.+ ||+|.+.|+|.+||.+.++.. ++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~-~DG- 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL-LDG- 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc-ccC-
Confidence 3489999998777766 3 479999999998877554311 1122333 999999999999999998755 666
Q ss_pred Cccceeecccccc---------ccccceEEEecCC---CCCCHHHHHHh
Q 018554 86 SSPLQVKYADGEL---------ERLEHKLFIGMLP---KNVSEAEVSAL 122 (354)
Q Consensus 86 ~~~l~v~~~~~~~---------~~~~~~l~V~~l~---~~~t~~~l~~~ 122 (354)
+.|+..|-..+- -....++|+..-- +..|.+||...
T Consensus 193 -r~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 193 -RVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred -ceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 777777654321 1113345543322 34667777543
No 172
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.98 E-value=0.056 Score=52.21 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=49.7
Q ss_pred ccceEEEecCCCCCCHHHHHHhhc--cCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFS--IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~--~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
+.|.|.++.|+.++-+|+|+.+|. .|-.+++|.+-.+.+ =||+|++..||++|.+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHH
Confidence 357899999999999999999994 577888988876533 37999999999999987754
No 173
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.97 E-value=0.0046 Score=42.22 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEF----ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~----G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
..+|+|.|+ -+++.+||+.+|..| + ...|..+.|. -|=|.|.|.+.|.+||.+|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 468999999 458999999999998 4 4577778886 4889999999999999764
No 174
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.95 E-value=0.0044 Score=42.32 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=44.2
Q ss_pred cceEEEecCCCCCCHHHHHHhhccC---CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIY---GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~---G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 163 (354)
..+|+|.+++ +++.+||+.+|..| .....|..+.|. -|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 3579999994 57888899999888 135677777763 4789999999999999765
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.89 E-value=0.00045 Score=60.11 Aligned_cols=63 Identities=25% Similarity=0.459 Sum_probs=50.3
Q ss_pred HHHHHhhc-cCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 117 AEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 117 ~~l~~~F~-~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
|||...|+ +||+|++++|..+....-+|-++|.|..+++|++|++.||+.. +.| ++|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw-~~G--~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW-YNG--RPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc-ccC--CcceeeecC
Confidence 44555554 9999999988876544457899999999999999999999987 676 577777653
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.81 E-value=0.0034 Score=55.61 Aligned_cols=67 Identities=22% Similarity=0.348 Sum_probs=52.1
Q ss_pred HHHHHHhhccCCCeeEEEEeeCCC-CCcc-eEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCChH
Q 018554 116 EAEVSALFSIYGTIKDLQILRGSQ-QTSK-GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185 (354)
Q Consensus 116 ~~~l~~~F~~~G~v~~i~i~~~~~-~~~~-g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (354)
++++++.+++||.|..|.|+.+.. ...+ --.||+|+..++|.+|+..|||.. ++| +.+...|-+..+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy-FGG--r~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY-FGG--RVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce-ecc--eeeeheeccHHh
Confidence 557889999999999999988743 2222 348999999999999999999986 666 566666655443
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.80 E-value=0.0015 Score=63.11 Aligned_cols=84 Identities=15% Similarity=0.254 Sum_probs=69.0
Q ss_pred cccceEEEecCCCCCCHHHHHHhhc-cCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~-~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
..++.|||.||---.|.-.|+.++. .+|.|++..|-+- |..|||.|.+.++|...+.+|||-..-.++.+.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 3478899999999999999999997 5667777643322 568999999999999999999998877788889999
Q ss_pred EecCChHHHH
Q 018554 179 KWADTEKERQ 188 (354)
Q Consensus 179 ~~a~~~~~~~ 188 (354)
.|+.......
T Consensus 517 df~~~deld~ 526 (718)
T KOG2416|consen 517 DFVRADELDK 526 (718)
T ss_pred eecchhHHHH
Confidence 9987655443
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.70 E-value=0.0089 Score=43.08 Aligned_cols=55 Identities=22% Similarity=0.386 Sum_probs=41.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
.+-.+|+ +|+.+...||.++|+.||.| .|..+.|. -|||...+.+.|..|++.+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3445554 99999999999999999997 45555664 69999999999999998874
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.68 E-value=0.0015 Score=63.02 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=67.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~-~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
....++.|+|.||=.-+|.-.|++++.+ .|.|++.+| |+ -+..|||.|.+.++|...+.+|||..+-.+.-+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4567888999999999999999999996 667887754 32 3348999999999999999999998887777777
Q ss_pred ceeeccccc
Q 018554 89 LQVKYADGE 97 (354)
Q Consensus 89 l~v~~~~~~ 97 (354)
|.+.|...+
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 777776543
No 180
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.54 E-value=0.045 Score=42.28 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=52.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~ 81 (354)
..+......+.+...|.-++.++|..+.+.+- .|+.++|++|.. .++--+.++|.+.++|+...+.+||+.+
T Consensus 7 ~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 7 LPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred CCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 33444455555555566666677776666654 488899999864 3555699999999999999999999885
No 181
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.48 E-value=0.002 Score=55.99 Aligned_cols=71 Identities=13% Similarity=0.273 Sum_probs=58.5
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-C--------CCcc----eEEEEEeCCHHHHHHHHHHhCCCc
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-Q--------QTSK----GCAFLKYETKEQALAALEAINGKH 167 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~--------~~~~----g~afV~f~~~~~A~~Ai~~l~g~~ 167 (354)
..-.||+++||..++...|+++|++||+|-.|.+-... . +.++ .-++|+|.+...|.++.+.||++.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45789999999999999999999999999999886542 2 1222 348899999999999999999987
Q ss_pred ccCCC
Q 018554 168 KMEGS 172 (354)
Q Consensus 168 ~~~g~ 172 (354)
|.|+
T Consensus 153 -Iggk 156 (278)
T KOG3152|consen 153 -IGGK 156 (278)
T ss_pred -cCCC
Confidence 5553
No 182
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.42 E-value=0.0052 Score=62.29 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=67.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....+.+||++|..++....|...|..||.|..|.+-. |. -|++|.|++...+..|++.+.+.. +.+-.+.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq--~yayi~yes~~~aq~a~~~~rgap-~G~P~~r~ 523 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQ--PYAYIQYESPPAAQAATHDMRGAP-LGGPPRRL 523 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CC--cceeeecccCccchhhHHHHhcCc-CCCCCccc
Confidence 556788999999999999999999999999999876633 22 399999999999999999998877 55556778
Q ss_pred eeeccc
Q 018554 90 QVKYAD 95 (354)
Q Consensus 90 ~v~~~~ 95 (354)
.|.++.
T Consensus 524 rvdla~ 529 (975)
T KOG0112|consen 524 RVDLAS 529 (975)
T ss_pred cccccc
Confidence 998874
No 183
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.06 E-value=0.0038 Score=54.49 Aligned_cols=60 Identities=17% Similarity=0.384 Sum_probs=44.7
Q ss_pred HHHHHHHh-hcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 29 AQLLAMFK-EFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 29 ~~L~~~F~-~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
+||...|+ +||+|++++|-.+.. -.-+|-++|.|..+++|++|++.||+.. +.+ ++|...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw-~~G--~pi~ae 143 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRW-YNG--RPIHAE 143 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCcc-ccC--Ccceee
Confidence 45555556 799999987655432 3457899999999999999999998865 555 555443
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.73 E-value=0.064 Score=42.78 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=54.1
Q ss_pred cCCCCCCeEEEcCCCCCCC-HHHHH---HHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 9 KSSEERVKLFVGQVPKHMT-EAQLL---AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~t-e~~L~---~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
..+..-.+|.|+=|.+++. .+||+ ..++.||+|.+|.+.- +--|.|.|+|..+|.+|+.+++... .|
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~--pg 151 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRA--PG 151 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCC--CC
Confidence 4566788999988776653 33444 4567799999987632 2269999999999999999997633 33
Q ss_pred CCccceeeccc
Q 018554 85 ASSPLQVKYAD 95 (354)
Q Consensus 85 ~~~~l~v~~~~ 95 (354)
..++..|..
T Consensus 152 --tm~qCsWqq 160 (166)
T PF15023_consen 152 --TMFQCSWQQ 160 (166)
T ss_pred --ceEEeeccc
Confidence 555555543
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.73 E-value=0.11 Score=40.02 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=50.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 168 (354)
..+.+...++.++.++|..+.+.+- .|+.++|++|... ++-.++++|.+.++|.+..+..||+.+
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3445555667777777876666664 4788999998654 477899999999999999999999873
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.61 E-value=0.05 Score=52.54 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=53.2
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKE--FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~--~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
..+-+...+.|-|.|+-||..+-+|+++.||+. +-++.+|..--+. -=||+|++..||..|.+.|.
T Consensus 166 gekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 166 GEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred ccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHH
Confidence 344455667788999999999999999999986 6678888765543 25999999999999987663
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.60 E-value=0.042 Score=46.41 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=53.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhcc-CCCe---eEEEEeeC--CCC-CcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc-
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSI-YGTI---KDLQILRG--SQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSS- 173 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~-~G~v---~~i~i~~~--~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~- 173 (354)
..+|.|++||.++|++++.+.++. ++.. ..+.-..+ ... ....-|+|.|.+.+++......++|..+.+.++
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 468999999999999999998876 6665 33332222 111 123569999999999999999999987666433
Q ss_pred -eeEEEEecCC
Q 018554 174 -VPLVVKWADT 183 (354)
Q Consensus 174 -~~l~v~~a~~ 183 (354)
....|++|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3556777743
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.58 E-value=0.05 Score=43.86 Aligned_cols=55 Identities=22% Similarity=0.456 Sum_probs=41.6
Q ss_pred HHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCC
Q 018554 118 EVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (354)
Q Consensus 118 ~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 183 (354)
+|.+.|..||+|.-++++.+ .-+|+|.+-++|.+|+. ++|.. +.| +.|+|++..+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~-v~g--~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQ-VNG--RTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSE-ETT--EEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcE-ECC--EEEEEEeCCc
Confidence 57788899999999988854 67999999999999995 79987 565 5666665443
No 189
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.54 E-value=0.036 Score=49.32 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=48.8
Q ss_pred HHHHHHHHhhcCCeeEEEEeeCCCCCCcc-cEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 28 EAQLLAMFKEFALVDEVNIIKDKTTRASR-GCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 28 e~~L~~~F~~~G~v~~i~i~~d~~tg~~~-G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
|+++++.+++||.|..|.|..+...-..+ --.||+|+..++|.+|+-.|||+- +.| +.++..|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy-FGG--r~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY-FGG--RVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce-ecc--eeeeheec
Confidence 45788899999999999998876533322 247999999999999999998855 555 55555443
No 190
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.46 E-value=0.021 Score=52.76 Aligned_cols=79 Identities=11% Similarity=0.242 Sum_probs=59.5
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS----QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~----~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
..|.|.||..+.|.|+++.+|.-.|+|.++.++... -....-.|||.|.+...+..|-. |.++.+++- ..|.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdr--aliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDR--ALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeee--eEEEE
Confidence 368999999999999999999999999999998742 23345689999999988887764 555554542 33444
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
-+++..
T Consensus 85 p~~~~~ 90 (479)
T KOG4676|consen 85 PYGDEV 90 (479)
T ss_pred ecCCCC
Confidence 455433
No 191
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.07 E-value=0.086 Score=49.77 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=59.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~ 82 (354)
+...+.|+|-.+|..++--||..|+..+- .|.+|+|+||... ++=-..|+|.+.++|+...+.+||+.+.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 33489999999999999999999999875 5999999997542 3335999999999999999999998753
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.78 E-value=0.027 Score=51.28 Aligned_cols=78 Identities=15% Similarity=0.364 Sum_probs=55.2
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeeCCCC-CCccc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 15 VKLFVGQVPKHMTEAQLL---AMFKEFALVDEVNIIKDKTT-RASRG--CCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~---~~F~~~G~v~~i~i~~d~~t-g~~~G--~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
.-+||-+|+.++..+++. ++|.+||.|..|.+.++... ...-+ -++|+|...++|..||...++.. +.+ +.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~-~dg--~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV-DDG--RA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH-hhh--hh
Confidence 557888898776666554 48999999999988887631 11111 28999999999999999987744 444 44
Q ss_pred ceeeccc
Q 018554 89 LQVKYAD 95 (354)
Q Consensus 89 l~v~~~~ 95 (354)
++..+..
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 5555443
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.76 E-value=0.03 Score=47.31 Aligned_cols=75 Identities=8% Similarity=0.091 Sum_probs=47.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEEee-CCCCCCc-ccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKE-FALV---DEVNIIK-DKTTRAS-RGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~-~G~v---~~i~i~~-d~~tg~~-~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
.....+|.|++||+++||+++.+.++. ++.. ..+.-.. +...+.+ -.-|||.|.+.+++....+.+++..+.+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 445679999999999999999997776 6654 2333112 2222222 24599999999999999999988766554
Q ss_pred C
Q 018554 85 A 85 (354)
Q Consensus 85 ~ 85 (354)
+
T Consensus 84 k 84 (176)
T PF03467_consen 84 K 84 (176)
T ss_dssp T
T ss_pred C
Confidence 3
No 194
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.68 E-value=0.021 Score=42.03 Aligned_cols=65 Identities=9% Similarity=0.128 Sum_probs=41.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCCCccceeeccccc--------cccccceEEEecCCCCCCHHHHHHhh
Q 018554 59 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGE--------LERLEHKLFIGMLPKNVSEAEVSALF 123 (354)
Q Consensus 59 aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~~~~--------~~~~~~~l~V~~l~~~~t~~~l~~~F 123 (354)
|.|+|.+.+.|++.++.-.....+.+....++++..... .....++|.|.|||..+++|+|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 689999999999998763222223332233333322111 11226789999999999999998754
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.64 E-value=0.2 Score=39.99 Aligned_cols=73 Identities=19% Similarity=0.375 Sum_probs=53.7
Q ss_pred ccccceEEEecCCCCCC-HHH---HHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCce
Q 018554 99 ERLEHKLFIGMLPKNVS-EAE---VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t-~~~---l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~ 174 (354)
+..-.+|.|+=|..++. .+| |...++.||.|++|...- +.-|.|.|+|..+|.+|+.++... ..| .
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s~--~pg--t 152 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQSR--APG--T 152 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcCC--CCC--c
Confidence 33456788877765543 334 445668999999998873 567999999999999999998764 333 4
Q ss_pred eEEEEec
Q 018554 175 PLVVKWA 181 (354)
Q Consensus 175 ~l~v~~a 181 (354)
.+.++|-
T Consensus 153 m~qCsWq 159 (166)
T PF15023_consen 153 MFQCSWQ 159 (166)
T ss_pred eEEeecc
Confidence 6788874
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.45 E-value=0.016 Score=52.65 Aligned_cols=79 Identities=19% Similarity=0.386 Sum_probs=59.0
Q ss_pred ceEEEecCCCCCCHHHHH---HhhccCCCeeEEEEeeCCC--C--CcceEEEEEeCCHHHHHHHHHHhCCCcccCCCcee
Q 018554 103 HKLFIGMLPKNVSEAEVS---ALFSIYGTIKDLQILRGSQ--Q--TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~---~~F~~~G~v~~i~i~~~~~--~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~ 175 (354)
+.+||-+|+..+.++++. +.|.+||.|..|.+.++.. . ....-++|+|+..++|..||..++|.. ++|+ .
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~-~dg~--~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV-DDGR--A 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH-hhhh--h
Confidence 457999999887766553 6889999999999988752 1 112348999999999999999999954 7774 3
Q ss_pred EEEEecCCh
Q 018554 176 LVVKWADTE 184 (354)
Q Consensus 176 l~v~~a~~~ 184 (354)
|+..++.++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 555665544
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.32 E-value=0.26 Score=35.71 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=40.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
+..||. +|.++...||.++|+.||.|. |..+.| .-|||....++.|..|+..++-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 455665 999999999999999999864 444433 3699999999999999988764
No 198
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=94.28 E-value=3.3 Score=36.00 Aligned_cols=8 Identities=0% Similarity=0.302 Sum_probs=3.5
Q ss_pred CCCCCHHH
Q 018554 111 PKNVSEAE 118 (354)
Q Consensus 111 ~~~~t~~~ 118 (354)
..+.++|.
T Consensus 17 nrefddek 24 (341)
T KOG2893|consen 17 NREFDDEK 24 (341)
T ss_pred ccccchhh
Confidence 33444444
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.08 E-value=0.15 Score=48.20 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=57.8
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 168 (354)
...|+|-.+|..++-.||..++..|- .|.+|+|+||.... +-.++|+|.+.++|....+.+||+.+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-rymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-RYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-eEEEEEEeccchhHHHHHHHcCCCcC
Confidence 56799999999999999999997765 69999999975544 66799999999999999999999874
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.00 E-value=0.22 Score=44.71 Aligned_cols=75 Identities=23% Similarity=0.269 Sum_probs=53.5
Q ss_pred EEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 105 l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
|-|-+++.. ....|..+|++||+|.+...- ++ -.+-+|+|.++.+|++||.. ||+. |+|. +-|-|+-+..+
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~n---gNwMhirYssr~~A~KALsk-ng~i-i~g~-vmiGVkpCtDk 270 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SN---GNWMHIRYSSRTHAQKALSK-NGTI-IDGD-VMIGVKPCTDK 270 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecC--CC---CceEEEEecchhHHHHhhhh-cCee-eccc-eEEeeeecCCH
Confidence 444455544 344577899999999886655 23 34889999999999999975 7754 6654 77788876665
Q ss_pred HHHH
Q 018554 185 KERQ 188 (354)
Q Consensus 185 ~~~~ 188 (354)
...+
T Consensus 271 svi~ 274 (350)
T KOG4285|consen 271 SVIN 274 (350)
T ss_pred HHhc
Confidence 5443
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.98 E-value=0.19 Score=34.90 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 018554 24 KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (354)
Q Consensus 24 ~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~ 82 (354)
..++-+||+..+..|+- .+|..|+. || ||.|.|.++|++|.+..+++.++
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCC-----EE-EEEECChHHHHHHHHhcCCCEEE
Confidence 46788999999999964 24555653 34 89999999999999998876643
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.94 E-value=0.038 Score=55.86 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
.+..+-|..-..+...|..+|.+||+|.+++..+|-+ .|.|+|.+.+.|..|+++++|+.+.. .+-+.+|.++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~-~g~Ps~V~~a 371 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSV-TGAPSRVSFA 371 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccc-cCCceeEEec
Confidence 3445566677889999999999999999999999876 79999999999999999999987543 2456777766
Q ss_pred c
Q 018554 95 D 95 (354)
Q Consensus 95 ~ 95 (354)
+
T Consensus 372 k 372 (1007)
T KOG4574|consen 372 K 372 (1007)
T ss_pred c
Confidence 4
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.85 E-value=0.035 Score=56.11 Aligned_cols=75 Identities=27% Similarity=0.372 Sum_probs=62.6
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCC
Q 018554 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 183 (354)
+.++.|....++..-|..+|++||.|.++..+++ -..|.|.|.+.+.|..|+++|.|+.+.. ...+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~-~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSV-TGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccc-cCCceeEEeccc
Confidence 4566677777888899999999999999999988 4479999999999999999999998543 235788888864
Q ss_pred h
Q 018554 184 E 184 (354)
Q Consensus 184 ~ 184 (354)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 3
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.31 E-value=0.35 Score=43.43 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=47.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
....|-|-+++.. .-..|.++|++||+|.+...-. +--+-+|.|.+.-+|+|||.. +..+|.+
T Consensus 196 ~D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALsk--ng~ii~g 258 (350)
T KOG4285|consen 196 ADTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSK--NGTIIDG 258 (350)
T ss_pred ccceEEEeccCcc-chhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhh--cCeeecc
Confidence 3677888899876 3456778999999988765432 223899999999999999987 4454544
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.30 E-value=4.4 Score=36.55 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=94.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCC-------CCCcccEEEEEeCCHHHHHHHHH----HhcC
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT-------TRASRGCCFVICPSRQEADKAVN----ACHN 78 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~-------tg~~~G~aFV~f~~~~~A~~Ai~----~l~~ 78 (354)
+.=..|.|.+.||..+++--++..-|.+||.|++|.++.+.. ..+......+.|-+.+.|-...+ .|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 344567899999999999999999999999999999998761 11334578899999888765533 2211
Q ss_pred C-ccCCCCCccceeecccc---------ccc------------------cccceEEEecCCCCCCHHHH-HHhh---ccC
Q 018554 79 K-KTLPGASSPLQVKYADG---------ELE------------------RLEHKLFIGMLPKNVSEAEV-SALF---SIY 126 (354)
Q Consensus 79 ~-~~~~g~~~~l~v~~~~~---------~~~------------------~~~~~l~V~~l~~~~t~~~l-~~~F---~~~ 126 (354)
- ..+ +...|.+.+..- +.+ ...+.|.|. +...+.++++ .+.+ ..=
T Consensus 91 fK~~L--~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 91 FKTKL--KSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHhc--CCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccC
Confidence 0 111 123344433220 000 014455554 3344544443 2222 222
Q ss_pred C----CeeEEEEeeCC---CCCcceEEEEEeCCHHHHHHHHHHhC
Q 018554 127 G----TIKDLQILRGS---QQTSKGCAFLKYETKEQALAALEAIN 164 (354)
Q Consensus 127 G----~v~~i~i~~~~---~~~~~g~afV~f~~~~~A~~Ai~~l~ 164 (354)
+ .+++|.++... +.-.+.||.++|-+..-|.+.++-|.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2 37888888642 33446899999999999999887665
No 206
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.49 E-value=0.32 Score=41.27 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=43.0
Q ss_pred CHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCcccCCCceeEEEEecCC
Q 018554 115 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN--GKHKMEGSSVPLVVKWADT 183 (354)
Q Consensus 115 t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~~g~~~~l~v~~a~~ 183 (354)
..+.|+++|..++.+..+.+++. -+-..|.|.+.++|.+|...|+ +.. +.| ..++|-|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~-~~g--~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTS-FNG--KRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSE-ETT--EE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccc-cCC--CceEEEEccc
Confidence 45789999999999988888864 3468899999999999999998 766 454 4678887743
No 207
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=7.5 Score=37.33 Aligned_cols=13 Identities=31% Similarity=0.930 Sum_probs=9.4
Q ss_pred HHHhhccCCCeeE
Q 018554 119 VSALFSIYGTIKD 131 (354)
Q Consensus 119 l~~~F~~~G~v~~ 131 (354)
|-.+|+-||.|..
T Consensus 247 lG~I~EiFGpV~~ 259 (483)
T KOG2236|consen 247 LGQIFEIFGPVKN 259 (483)
T ss_pred chhhhhhhcccCC
Confidence 5567778887765
No 208
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.67 E-value=0.36 Score=38.97 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 30 QLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 30 ~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
+|.+.|..||+|.-|+++.+ .-+|+|.+-++|-+|+.. ++.+ +.| +.++++..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~-dg~~-v~g--~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSL-DGIQ-VNG--RTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHG-CCSE-ETT--EEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHcc-CCcE-ECC--EEEEEEeC
Confidence 77788889999888877665 479999999999999854 5655 455 55665543
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.33 E-value=0.021 Score=56.30 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=54.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
...+..++||+||...+..+-++.+...+|.|.++.... |+|..|.....+..|+..++... +.+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~-~~~ 100 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELN-IDD 100 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccC-CCc
Confidence 345678999999999999999999999999988775443 99999999999999998875433 444
No 210
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=90.25 E-value=4.2 Score=35.42 Aligned_cols=11 Identities=45% Similarity=0.896 Sum_probs=4.8
Q ss_pred CCCCCCCCCCC
Q 018554 219 GYAPPYNGYGY 229 (354)
Q Consensus 219 ~~~p~~~~~~~ 229 (354)
|+.|+...||.
T Consensus 132 g~~pp~~~~gm 142 (341)
T KOG2893|consen 132 GPPPPSMAYGM 142 (341)
T ss_pred CCCCcccccCC
Confidence 44444444443
No 211
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.34 E-value=0.21 Score=47.57 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=46.9
Q ss_pred CHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCC
Q 018554 115 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (354)
Q Consensus 115 t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 183 (354)
|.++|..+|.+||+|+.|.|-.. ---|.|+|.+..+|-+|.. ..+.. |++ +.|+|-|-+.
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~av-lnn--r~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAV-LNN--RFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccce-ecC--ceeEEEEecC
Confidence 46789999999999999998765 2368999999999987774 45544 665 6778888665
No 212
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.70 E-value=8 Score=37.15 Aligned_cols=7 Identities=0% Similarity=0.041 Sum_probs=4.2
Q ss_pred EEEeCCH
Q 018554 147 FLKYETK 153 (354)
Q Consensus 147 fV~f~~~ 153 (354)
.++|.+-
T Consensus 318 e~dfSDD 324 (483)
T KOG2236|consen 318 EQDFSDD 324 (483)
T ss_pred hhccchH
Confidence 3677663
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.33 E-value=2 Score=42.19 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=61.3
Q ss_pred ccceEEEecCCCC-CCHHHHHHhhccC----CCeeEEEEeeCCCCC----------------------------------
Q 018554 101 LEHKLFIGMLPKN-VSEAEVSALFSIY----GTIKDLQILRGSQQT---------------------------------- 141 (354)
Q Consensus 101 ~~~~l~V~~l~~~-~t~~~l~~~F~~~----G~v~~i~i~~~~~~~---------------------------------- 141 (354)
.+++|-|-||.|+ +.-+||.-+|..| |.|.+|.|.....|+
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3678999999986 7788999999877 589999997643331
Q ss_pred --------------cceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 142 --------------SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 142 --------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..-||.|+|.+.+.|....+..+|.. ++.....|.++|
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~E-fEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIE-FESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcce-eccccceeeeee
Confidence 11479999999999999999999977 554545555555
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.07 E-value=1.7 Score=30.12 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=38.7
Q ss_pred CCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccc
Q 018554 112 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 169 (354)
Q Consensus 112 ~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 169 (354)
..++-++++..+..|+- .+|..|++ | -||.|.+.++|+++.+..+++.++
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRT----G-FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCC----E-EEEEECChHHHHHHHHhcCCCEEE
Confidence 35788999999999852 34445543 3 389999999999999999998753
No 215
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=86.68 E-value=8.4 Score=37.00 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=6.4
Q ss_pred CCCcCCCCCCCC
Q 018554 234 SYGLMQYRLPPM 245 (354)
Q Consensus 234 ~~g~~~~~~~p~ 245 (354)
+.+|++|.+.++
T Consensus 547 ~~~Y~P~~PQ~~ 558 (654)
T COG5180 547 MGMYMPFQPQPM 558 (654)
T ss_pred cccccCCCCCcc
Confidence 344566665444
No 216
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=86.05 E-value=2.6 Score=30.80 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=44.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
.-|+--++.+.+..++++.++. || .|.+|+.+.-+. + .-=|||.+...++|.+....+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHhh
Confidence 4556678899999999999998 78 588888777542 1 113999999998888876554
No 217
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.53 E-value=1.6 Score=37.11 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=40.5
Q ss_pred CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc--CCccCCCCCccceeecc
Q 018554 27 TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH--NKKTLPGASSPLQVKYA 94 (354)
Q Consensus 27 te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~--~~~~~~g~~~~l~v~~~ 94 (354)
..+.|+++|..++.+....+.+.- +-..|.|.+.++|.+|...|+ +.. +.+ ..+++.++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~-~~g--~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTS-FNG--KRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSE-ETT--EE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccc-cCC--CceEEEEc
Confidence 568999999999998887777653 368999999999999999987 444 333 44666555
No 218
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=84.89 E-value=0.43 Score=45.50 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=53.8
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 12 EERVKLFVGQVPKHM-TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~-te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
.+.+.|=+.-++... +.++|...|.+||+|++|.|-.... .|.|+|.+..+|-+|-. .++.. +.+ +.|+
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~-s~~av-lnn--r~iK 439 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYA-SHGAV-LNN--RFIK 439 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhc-cccce-ecC--ceeE
Confidence 344555555555543 6779999999999999998855422 68999999999966643 33433 544 7888
Q ss_pred eeccccc
Q 018554 91 VKYADGE 97 (354)
Q Consensus 91 v~~~~~~ 97 (354)
+.|.+..
T Consensus 440 l~whnps 446 (526)
T KOG2135|consen 440 LFWHNPS 446 (526)
T ss_pred EEEecCC
Confidence 8887653
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.74 E-value=3.5 Score=36.87 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=39.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHH
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQ 67 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~ 67 (354)
.......|+|+||+.|+--.||+..+.+-+.+ -..|-+. -.+|-||+.|.|..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 34455679999999999999999999988753 2333332 35678999997754
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.69 E-value=4.9 Score=28.43 Aligned_cols=59 Identities=25% Similarity=0.408 Sum_probs=34.0
Q ss_pred CCCCHHHHHHhhccC-C----CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 112 KNVSEAEVSALFSIY-G----TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 112 ~~~t~~~l~~~F~~~-G----~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
..++..+|..++..- | .|-+|+|..+ |+||+-.. +.|.++++.|++.. +.| +.|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~-~~g--k~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKK-IKG--KKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT---SSS------EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCC-CCC--eeEEEEEC
Confidence 456777888777544 3 4778888854 88998876 57889999999876 666 56666653
No 221
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=83.53 E-value=4.1 Score=29.22 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=44.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
.-|+-.++.+.+..+|++.++. |+ .|.+|+.+.-+. ..==|||.+...++|.+.-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 4667778999999999999998 77 588888766542 1113999999888887765543
No 222
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=82.32 E-value=0.76 Score=45.69 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=55.3
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 173 (354)
...++||+++...+..+-++.+...+|-|..++... |+|..|.....+.+|+..++... +++..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~-~~~~k 102 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELN-IDDQK 102 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccC-CCcch
Confidence 367899999999999999999999999998887764 89999999999999999887754 55543
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.50 E-value=4.2 Score=38.18 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=47.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~-v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~ 75 (354)
.+=.+.|=|.++|.....+||...|+.|+. --+|+.+.|. .+|..|.+...|..||..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 334567889999999999999999999975 4456666665 699999999999999865
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=78.12 E-value=3.3 Score=33.61 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=72.0
Q ss_pred CCCeEEEcCCC--CCCCHHHHHHHHhh-cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 13 ERVKLFVGQVP--KHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 13 ~~~~lfVg~Lp--~~~te~~L~~~F~~-~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
......||.+- .+.+-..|.+.+.+ ++....+.+..= ..++..+.|.+++++.++++. +...+.+ ..+
T Consensus 14 ~~~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~--~p~~~~~--~~~ 84 (153)
T PF14111_consen 14 RWQLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG--GPWNFNG--HFL 84 (153)
T ss_pred hcCeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec--ccccccc--cch
Confidence 33455666663 45677788877766 454334443331 235899999999999999875 3333443 333
Q ss_pred eeeccccccc-------cccceEEEecCCCC-CCHHHHHHhhccCCCeeEEEEeeC
Q 018554 90 QVKYADGELE-------RLEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRG 137 (354)
Q Consensus 90 ~v~~~~~~~~-------~~~~~l~V~~l~~~-~t~~~l~~~F~~~G~v~~i~i~~~ 137 (354)
.++.-++... ....=|-|.+||.. .+++.|+++.+.+|++.+++....
T Consensus 85 ~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 85 ILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 3332221111 11223677799866 677888999999999999876643
No 225
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.32 E-value=9.3 Score=37.73 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=54.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeeCCC----------CCC---------------------
Q 018554 11 SEERVKLFVGQVPKH-MTEAQLLAMFKEF----ALVDEVNIIKDKT----------TRA--------------------- 54 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~-~te~~L~~~F~~~----G~v~~i~i~~d~~----------tg~--------------------- 54 (354)
...+++|-|-|+.|+ +..+||.-+|..| |.|.+|.|....- +|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 567889999999987 7888999999886 5788888754211 111
Q ss_pred ---------------cc-cEEEEEeCCHHHHHHHHHHhcCCc
Q 018554 55 ---------------SR-GCCFVICPSRQEADKAVNACHNKK 80 (354)
Q Consensus 55 ---------------~~-G~aFV~f~~~~~A~~Ai~~l~~~~ 80 (354)
-+ =||.|+|.+.+.|.+..+.|.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~E 292 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIE 292 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcce
Confidence 11 258999999999999999998866
No 226
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=76.12 E-value=12 Score=26.91 Aligned_cols=57 Identities=7% Similarity=0.155 Sum_probs=41.5
Q ss_pred eEEEecCCCCCCHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018554 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~-~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 162 (354)
+-|+-.++.+.+..+|++.++. |+ .|.+|..+.-..+ .--|||++..-++|......
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHh
Confidence 4566667889999999999965 56 5778777655432 23599999888888776544
No 227
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=75.87 E-value=6.7 Score=35.42 Aligned_cols=65 Identities=14% Similarity=0.304 Sum_probs=51.4
Q ss_pred cccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC--------CCCcceEEEEEeCCHHHHHHHH
Q 018554 96 GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--------QQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 96 ~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~--------~~~~~g~afV~f~~~~~A~~Ai 160 (354)
++.+-..+.|.+.|+..+++--.+-+.|.+||.|++|.++.+. ..+....+.+-|-+++.|....
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 3334446788999999999988899999999999999999865 2334578889999998887543
No 228
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.56 E-value=15 Score=25.88 Aligned_cols=64 Identities=25% Similarity=0.464 Sum_probs=36.3
Q ss_pred eEEEcCCC--CCCCHHHHHHHHhhcC-----CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 16 KLFVGQVP--KHMTEAQLLAMFKEFA-----LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 16 ~lfVg~Lp--~~~te~~L~~~F~~~G-----~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
+||| |+- ..++..+|..++..-+ .|-.|.|..+ |.||+-.. +.|+++++.|++.. +.+ +.
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~-~~g--k~ 68 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKK-IKG--KK 68 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT---SSS----
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCC-CCC--ee
Confidence 4555 443 3578899999998864 3557777554 88998865 58888999998766 444 55
Q ss_pred ceee
Q 018554 89 LQVK 92 (354)
Q Consensus 89 l~v~ 92 (354)
+++.
T Consensus 69 v~ve 72 (74)
T PF03880_consen 69 VRVE 72 (74)
T ss_dssp --EE
T ss_pred EEEE
Confidence 5554
No 229
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=72.98 E-value=13 Score=37.05 Aligned_cols=87 Identities=17% Similarity=0.352 Sum_probs=59.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCCCCccc-----------eeecccccccc--------ccceEEEecCCCCCCHHH
Q 018554 58 CCFVICPSRQEADKAVNACHNKKTLPGASSPL-----------QVKYADGELER--------LEHKLFIGMLPKNVSEAE 118 (354)
Q Consensus 58 ~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l-----------~v~~~~~~~~~--------~~~~l~V~~l~~~~t~~~ 118 (354)
-||+++.+++.-+-..+.||...++.|...-+ -++|++.+... ....+|+.+|+.++.+|.
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 59999999999888888887666555532212 12333332221 156899999999999887
Q ss_pred HHHhhccCCCeeEEEEeeCCCCCcceEEEEEeC
Q 018554 119 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 151 (354)
Q Consensus 119 l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~ 151 (354)
-.++....--.+.++|++ -||| |+|+
T Consensus 318 Q~~~irsipGlEna~i~r------pgYA-IEYD 343 (621)
T COG0445 318 QEQIIRSIPGLENAEILR------PGYA-IEYD 343 (621)
T ss_pred HHHHHHhCcccccceeec------ccee-eeec
Confidence 777776666678888886 3565 5554
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=72.59 E-value=15 Score=26.77 Aligned_cols=57 Identities=7% Similarity=0.154 Sum_probs=42.2
Q ss_pred eEEEecCCCCCCHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018554 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~-~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 162 (354)
+-|+-.++.+.+..+|++.++. || .|.+|..+.-..+ .--|+|++..-++|.+....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHh
Confidence 3455567888999999999965 66 5888877765433 33599999998888876554
No 231
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=71.07 E-value=6.1 Score=40.77 Aligned_cols=32 Identities=9% Similarity=0.374 Sum_probs=26.3
Q ss_pred cCCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCC
Q 018554 9 KSSEERVKLFVGQVPKH-MTEAQLLAMFKEFAL 40 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~-~te~~L~~~F~~~G~ 40 (354)
+....++||+|.+||.+ .++++|+++|.+.+.
T Consensus 203 ~~~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~ 235 (827)
T COG5594 203 QNNLSSRTVLISGLPSELRSDEELKELFDKLKV 235 (827)
T ss_pred ccCCCCceEEeecCChhhcCchhHHHHHhhcCe
Confidence 35668999999999977 577889999998643
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=69.71 E-value=9.9 Score=25.89 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=16.4
Q ss_pred HHHHHHhhccCCCeeEEEEee
Q 018554 116 EAEVSALFSIYGTIKDLQILR 136 (354)
Q Consensus 116 ~~~l~~~F~~~G~v~~i~i~~ 136 (354)
.++||++|+..|+|.-+-+-.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcc
Confidence 357999999999987665543
No 233
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=69.17 E-value=31 Score=32.74 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeeC
Q 018554 10 SSEERVKLFVGQVPKH-MTEAQLLAMFKEF----ALVDEVNIIKD 49 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~-~te~~L~~~F~~~----G~v~~i~i~~d 49 (354)
......+|-|=|++|+ +...||..+|+.| |++..|.|...
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 3556788999999986 7888999999876 57777777554
No 234
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.25 E-value=8.7 Score=34.32 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=26.8
Q ss_pred cceEEEecCCCC------------CCHHHHHHhhccCCCeeEEEEe
Q 018554 102 EHKLFIGMLPKN------------VSEAEVSALFSIYGTIKDLQIL 135 (354)
Q Consensus 102 ~~~l~V~~l~~~------------~t~~~l~~~F~~~G~v~~i~i~ 135 (354)
..+||+.+||-. -+++.|+..|+.||+|..|.|.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 567888888732 3567799999999999888775
No 235
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=66.07 E-value=19 Score=29.20 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=40.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~ 75 (354)
.-|+--++.+.+..+|++.+++ |+ .|..|+.+.-+. |.- =|||.+....+|.+..+.
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHHh
Confidence 4555568899999999999998 77 488887766543 111 399999877776554443
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=65.68 E-value=0.85 Score=44.42 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=47.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCH---HHHHHHHHH
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSR---QEADKAVNA 75 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~---~~A~~Ai~~ 75 (354)
+....|+|||.||.++++-++|..+++.+--+..+.+-.+...++...+++|.|+-- ..|+.||+.
T Consensus 227 n~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 227 NTHKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred hhhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 346678999999999999999999999886666655544443344556788999654 455555543
No 237
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=62.92 E-value=25 Score=26.10 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=28.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCC
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDK 50 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~ 50 (354)
..|+-.++.+++..||++.|+. || .|.+|+.+.-+
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~ 57 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVK 57 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeC
Confidence 4566678899999999999998 88 58888766543
No 238
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.82 E-value=15 Score=28.59 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=25.4
Q ss_pred CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHH
Q 018554 26 MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQE 68 (354)
Q Consensus 26 ~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~ 68 (354)
++.++|++.|..|..++ ++...++. .++|++.|+|.+...
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChH
Confidence 46689999999998864 66666653 578999999987654
No 239
>CHL00030 rpl23 ribosomal protein L23
Probab=61.51 E-value=30 Score=25.78 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=28.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCC
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDK 50 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~ 50 (354)
.-|+--++.+.+..+|++.++. |+ .|..|+.+.-+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 5677778999999999999998 77 58888876654
No 240
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.42 E-value=7.2 Score=34.81 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=29.5
Q ss_pred CCCCCeEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEEe
Q 018554 11 SEERVKLFVGQVPKH------------MTEAQLLAMFKEFALVDEVNII 47 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~------------~te~~L~~~F~~~G~v~~i~i~ 47 (354)
.+...||++.+||-. -+|+-|+..|+.||+|..|.|.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 345568999999832 3688899999999999988774
No 241
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=58.12 E-value=22 Score=27.41 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHhhcc---CCCeeEEEEeeC-CCCCcceEEEEEeCCH
Q 018554 110 LPKNVSEAEVSALFSI---YGTIKDLQILRG-SQQTSKGCAFLKYETK 153 (354)
Q Consensus 110 l~~~~t~~~l~~~F~~---~G~v~~i~i~~~-~~~~~~g~afV~f~~~ 153 (354)
-|+.+|..+|+++|.. |-.|.+-.+.+| --..+...||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 4678999999999964 333444445555 1222345788887665
No 242
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.06 E-value=38 Score=32.09 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=45.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCC-eeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~-v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 162 (354)
..+.|=|-+++.....+||...|+.|+. --+|+.+.| -.+|-.|++...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 3678899999999999999999999974 455666654 4799999999999999864
No 243
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.18 E-value=6.3 Score=30.76 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=24.4
Q ss_pred CCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHH
Q 018554 114 VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 156 (354)
Q Consensus 114 ~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A 156 (354)
.+.++|++.|+.|..++ ++.+.+.. -++|++.|+|..--..
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSG 69 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHH
Confidence 35578999999998764 66666544 3479999999775444
No 244
>PRK11901 hypothetical protein; Reviewed
Probab=56.89 E-value=23 Score=32.67 Aligned_cols=55 Identities=9% Similarity=0.176 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEE--EeCCHHHHHHHHHHhCCC
Q 018554 110 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFL--KYETKEQALAALEAINGK 166 (354)
Q Consensus 110 l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV--~f~~~~~A~~Ai~~l~g~ 166 (354)
|-...++++|.++..+++ +..+.+.+. ++|+ .+|..| .|.+.++|.+|++.|-..
T Consensus 250 L~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 250 LSSASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eecCCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 333456788888887775 455666655 3444 456665 799999999999988654
No 245
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=56.42 E-value=26 Score=23.86 Aligned_cols=19 Identities=11% Similarity=0.333 Sum_probs=14.9
Q ss_pred HHHHHHHHhhcCCeeEEEE
Q 018554 28 EAQLLAMFKEFALVDEVNI 46 (354)
Q Consensus 28 e~~L~~~F~~~G~v~~i~i 46 (354)
.++|+++|+..|+|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999765443
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=55.16 E-value=23 Score=32.79 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=35.4
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCCCccceeeccccccccccceEEEecCCCCCCHHHHHHhhc
Q 018554 59 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS 124 (354)
Q Consensus 59 aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~ 124 (354)
|||+|++.++|..|++.+...+. ..+++..+-.. +.|.=.||..+..+..+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-----~~~~v~~APeP-----~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-----NSWRVSPAPEP-----DDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-----CCceEeeCCCc-----ccccccccCCChHHHHHHHHHH
Confidence 79999999999999997654331 33344443322 2355567766666666665543
No 247
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=54.37 E-value=5.3 Score=37.58 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=55.0
Q ss_pred CCCCCeEEEcCCCCCCCHH--------HHHHHHhh--cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 018554 11 SEERVKLFVGQVPKHMTEA--------QLLAMFKE--FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~--------~L~~~F~~--~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~ 75 (354)
+...+.+|+.++....+.+ ++...|.. .+.+..|...+|.....++|-.|++|...+.|.+++..
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 4456778999998777666 99999999 67888999999987788999999999999999988753
No 248
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=54.08 E-value=37 Score=25.66 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEeeCCCC----CCcccEEEEEeCCHHHHHHH
Q 018554 24 KHMTEAQLLAMFKE-FALVDEVNIIKDKTT----RASRGCCFVICPSRQEADKA 72 (354)
Q Consensus 24 ~~~te~~L~~~F~~-~G~v~~i~i~~d~~t----g~~~G~aFV~f~~~~~A~~A 72 (354)
...+..||++-+.+ |+.=.+..++..-.| +++.|||.| |+|.+.|.+.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788899987766 775334444444333 577777776 6666666543
No 249
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=53.05 E-value=45 Score=27.06 Aligned_cols=55 Identities=9% Similarity=0.210 Sum_probs=38.6
Q ss_pred eEEEecCCCCCCHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 018554 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~-~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai 160 (354)
+-|+-.++...+..+|++.++. |+ .|..|..+.-..+. --|||++....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~--KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL--KKAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc--eEEEEEECCCCcHHHHH
Confidence 5666667889999999999965 66 47777666544432 35899997766665443
No 250
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=51.73 E-value=48 Score=27.32 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=29.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCC
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDK 50 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~ 50 (354)
..|+-.++.+++..+|++.|+. || .|..|+.+.-+
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~ 59 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVD 59 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecC
Confidence 4688889999999999999998 88 48888876643
No 251
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=51.31 E-value=14 Score=32.27 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=32.0
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV 44 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i 44 (354)
+....+..+||+-|||..++++.|.++.+..|-+..+
T Consensus 34 ~s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 34 HSNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3567788999999999999999999999999865543
No 252
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=51.12 E-value=11 Score=31.58 Aligned_cols=59 Identities=8% Similarity=0.044 Sum_probs=37.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCC--CcccEEEEEeCCHHHHHHHHHH
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR--ASRGCCFVICPSRQEADKAVNA 75 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg--~~~G~aFV~f~~~~~A~~Ai~~ 75 (354)
...+++|.. +.+...++|..+-+ |++..|...+... + ..+|-.||+|.+.+.|..+++.
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~-k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN-KAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC-CCCCCCCceEEEeecHHHHHhhhhh
Confidence 344556665 23333334444444 7888876654432 3 4578899999999999998865
No 253
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=51.03 E-value=34 Score=30.87 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=34.1
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCH
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETK 153 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~ 153 (354)
...|+++||+.++...||+..+.+-+.+ -+.|... | .++-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk--g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK--G-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee--c-CCcceeEecCCc
Confidence 3469999999999999999988776532 2223221 1 267899999664
No 254
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=49.31 E-value=35 Score=26.48 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEE----eeCCCCCCcccEEEEEeCCHHHHHHH
Q 018554 24 KHMTEAQLLAMFKE-FALVDEVNI----IKDKTTRASRGCCFVICPSRQEADKA 72 (354)
Q Consensus 24 ~~~te~~L~~~F~~-~G~v~~i~i----~~d~~tg~~~G~aFV~f~~~~~A~~A 72 (354)
..++.+||++-+.+ |-.-.++.+ ...-.+|++.|||.| |++.|.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 46789999988877 432222222 233445789999987 6777776643
No 255
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=49.14 E-value=75 Score=20.97 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=39.8
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCH----HHHHHHHHH
Q 018554 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETK----EQALAALEA 162 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~----~~A~~Ai~~ 162 (354)
++.|.+|.-.-....|++.+...-.|.++.+-.. .+.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4677788777778889999988888999888765 45677888754 444555554
No 256
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=48.03 E-value=24 Score=24.57 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=34.7
Q ss_pred HHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 018554 29 AQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73 (354)
Q Consensus 29 ~~L~~~F~~~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai 73 (354)
++|++-|...| +|.+|.-+..+.++...-.-||+.+...+..+++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~ 47 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY 47 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee
Confidence 57888888888 5889988888877777778899987765544443
No 257
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=45.43 E-value=1.1e+02 Score=22.45 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=34.6
Q ss_pred HHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 28 EAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 28 e~~L~~~F~~~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
.+.++++++++| +++++.+.. |+.-....+++.|.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHH
Confidence 456788888876 688887765 455567899999999988877655
No 258
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.17 E-value=26 Score=25.81 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 146 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 146 afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
|+|+|++..-|++.++.-.-..-+++....|+|+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 6899999999999887433322344433444443
No 259
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=40.63 E-value=62 Score=23.72 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=31.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeC
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICP 64 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~ 64 (354)
+-..-||||+++..+-|.-...+.+..+.- ++.++....+ ..||.|-..-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccCC--CCCEEEEEeC
Confidence 345569999998887776555555544443 3333333322 7789998773
No 260
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=40.14 E-value=68 Score=25.56 Aligned_cols=48 Identities=4% Similarity=0.050 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHhh-cC-CeeEEEEeeC----CCCCCcccEEEEEeCCHHHHHHH
Q 018554 24 KHMTEAQLLAMFKE-FA-LVDEVNIIKD----KTTRASRGCCFVICPSRQEADKA 72 (354)
Q Consensus 24 ~~~te~~L~~~F~~-~G-~v~~i~i~~d----~~tg~~~G~aFV~f~~~~~A~~A 72 (354)
...+.+||++-+.+ |+ .-.+..++.. -..+++.|||.| |+|.+.+.+.
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 36789999997776 76 3333333333 223577778776 6666665543
No 261
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=39.72 E-value=17 Score=30.46 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=39.3
Q ss_pred HHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCC
Q 018554 119 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (354)
Q Consensus 119 l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 183 (354)
...+|.+|.+..-.++++. .+...|.|.+.+.|..|...++... +.|+. .+..-+++.
T Consensus 32 ~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~-f~~~~-~~k~yfaQ~ 89 (193)
T KOG4019|consen 32 FENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTS-FNGKN-ELKLYFAQP 89 (193)
T ss_pred HHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcc-cCCCc-eEEEEEccC
Confidence 3455555555544455532 4567789999999999999999877 56542 566666654
No 262
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=38.98 E-value=39 Score=31.83 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=54.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEee-CCCCCC-cccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIK-DKTTRA-SRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~-v~~i~i~~-d~~tg~-~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
....++|-|.+||...++++|.+-...|-. |....... +..... -.+.++|.|...++.......+++..++..++
T Consensus 4 ~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 4 KEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred cccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 456788999999999999999988887653 33333332 111111 14679999999999888888887777666644
No 263
>PRK10905 cell division protein DamX; Validated
Probab=38.09 E-value=88 Score=28.91 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=37.4
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEE--EeCCHHHHHHHHHHhCCC
Q 018554 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFL--KYETKEQALAALEAINGK 166 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV--~f~~~~~A~~Ai~~l~g~ 166 (354)
+|-|+.+ .+++.|+++..++|. ....+... ++|+ ..|..+ .|.++++|++|++.|-..
T Consensus 249 TLQL~A~---Ss~~~l~~fakKlgL-~~y~vy~TtRnGk-pWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 249 TLQLSSS---SNYDNLNGWAKKENL-KNYVVYETTRNGQ-PWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred EEEEEec---CCHHHHHHHHHHcCC-CceEEEEeccCCc-eEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 4555444 556778888777753 43334433 4554 244444 799999999999988654
No 264
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=38.04 E-value=11 Score=26.26 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=21.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEF 38 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~ 38 (354)
...++++|||+||..+-++.=+.++...
T Consensus 24 s~tSr~vflG~IP~~W~~~~~~~~~k~~ 51 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHRKSWYKSL 51 (67)
T ss_pred HHcCceEEECCCChHHHHcCcchHHHHH
Confidence 4567899999999988877666666554
No 265
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=37.73 E-value=25 Score=21.11 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHhhcC
Q 018554 24 KHMTEAQLLAMFKEFA 39 (354)
Q Consensus 24 ~~~te~~L~~~F~~~G 39 (354)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998754
No 266
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=37.10 E-value=42 Score=28.20 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=38.3
Q ss_pred cceEEEecCCCCCCHHHHHHhhc-cCCCeeEEEEeeCCCC--CcceEEEEEeCCHHHHHHHHHHh
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRGSQQ--TSKGCAFLKYETKEQALAALEAI 163 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~-~~G~v~~i~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l 163 (354)
.+++|.. .|++.|.++.. +-|.+..+.+.+...+ ..+|-.||+|.+.+.|...++.-
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 4566665 45555544431 1178888877765443 55799999999999999877653
No 267
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=36.89 E-value=1.7e+02 Score=27.27 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
+..++|+|-+-.|---+.|++-..+-|.-..-.+.+|-.||. |+-+...+..+-...+.+- ...+++
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGt---Cavli~~~nRSL~anLgAA----------n~f~~d 146 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGT---CAVLITGDNRSLCANLGAA----------NCFKVD 146 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCce---EEEEEeCCCcchhhccchh----------hccCHH
Confidence 448999999998888888888888888544445556655553 3444444433322222221 112222
Q ss_pred ccccc----cccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEe-----e------CCCCCcceEEEEEeCCHHHHH
Q 018554 93 YADGE----LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL-----R------GSQQTSKGCAFLKYETKEQAL 157 (354)
Q Consensus 93 ~~~~~----~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~-----~------~~~~~~~g~afV~f~~~~~A~ 157 (354)
+.+.. .-.....+||.++-..+..+-|+.+-...-+..++.++ + +.-.+.-.|+.|.|.++++|+
T Consensus 147 hl~~~~~~~lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~ 226 (343)
T KOG2854|consen 147 HLDKEENWALVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAA 226 (343)
T ss_pred HhcchhhhhhhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHH
Confidence 22111 11123457888887777666655443322222221111 1 000112258999999999998
Q ss_pred HHHHH
Q 018554 158 AALEA 162 (354)
Q Consensus 158 ~Ai~~ 162 (354)
...+.
T Consensus 227 af~~~ 231 (343)
T KOG2854|consen 227 AFARA 231 (343)
T ss_pred HHHHh
Confidence 87754
No 268
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=36.20 E-value=50 Score=31.14 Aligned_cols=72 Identities=10% Similarity=0.203 Sum_probs=52.0
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCC-eeEEEEeeCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~-v~~i~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 173 (354)
.+++.|.+||..+++++|.+....|-. |....+.....+ .-.+.++|.|...++.....+..+|..+|+..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 467899999999999999998887754 333333322111 113779999999999888888888877776544
No 269
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=36.05 E-value=1.5e+02 Score=20.49 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=32.9
Q ss_pred CHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCC---HHHHHHHHHHhCC
Q 018554 115 SEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYET---KEQALAALEAING 165 (354)
Q Consensus 115 t~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~---~~~A~~Ai~~l~g 165 (354)
.-.++.+.|+.+| .+..|.-.........-.-||+++. ....+++++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3456788888887 5777754444433444567788874 5566677777654
No 270
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=35.95 E-value=1.2e+02 Score=21.18 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=30.9
Q ss_pred HHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeC-CHHHHHHHHHHhCC
Q 018554 116 EAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYE-TKEQALAALEAING 165 (354)
Q Consensus 116 ~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~-~~~~A~~Ai~~l~g 165 (354)
--++.+.|+.+| .+..|.-..-+.....-.-||+++ +.++..+|++.|..
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 446778888887 456655444333333445667777 45556778887765
No 271
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=35.77 E-value=1.5e+02 Score=25.35 Aligned_cols=48 Identities=25% Similarity=0.194 Sum_probs=34.0
Q ss_pred CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 018554 27 TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (354)
Q Consensus 27 te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~ 78 (354)
+.++.+++++.++.-. +.|..| |-..|=+-+.+.|.++|..|++.+-.
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~~~ 72 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREIFV 72 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHhcc
Confidence 6788888888877522 455556 33444456667999999999998744
No 272
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=35.51 E-value=5.9 Score=38.85 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=50.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH 167 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 167 (354)
+|.||+.++..+++.++|..++..+--+..+.+..+. ..+...+.+|+|+---.-..|+.+||+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ir 297 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIR 297 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcc
Confidence 6789999999999999999999888666666555442 22334678899988777777887887754
No 273
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=34.50 E-value=57 Score=24.34 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=29.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCC
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDK 50 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~ 50 (354)
....|+-.+..+.+..+|++.+++ || +|..|+.+.-+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k 58 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTK 58 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeC
Confidence 345566678899999999999998 88 58888876554
No 274
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=34.22 E-value=54 Score=24.25 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=27.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cCC-eeEEEEeeC
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKE-FAL-VDEVNIIKD 49 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~-~G~-v~~i~i~~d 49 (354)
..++-.++.+++..||+++++. ||. |.+|+.+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 3556678899999999999998 884 778776554
No 275
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.75 E-value=2.2e+02 Score=23.18 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=40.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeeCCCC---------CCccc-EEEEEeCCHHH
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEF---ALVDEVNIIKDKTT---------RASRG-CCFVICPSRQE 68 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~---G~v~~i~i~~d~~t---------g~~~G-~aFV~f~~~~~ 68 (354)
+..+|++..+...++|++.++..++= +++..|.+-+.+.+ +..|. |-+|.|++-+.
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 34789999999999999999998874 46677766554331 23444 88999987654
No 276
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=33.68 E-value=14 Score=25.72 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=26.9
Q ss_pred HHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018554 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (354)
Q Consensus 117 ~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 164 (354)
++|.+.|..+....++.- =.+|..|++.++|..++.++.
T Consensus 27 ~~v~~~~~~~~~f~k~vk---------L~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK---------LKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhh---------hhhccCCCCHHHHHHHHHHhh
Confidence 577777766554433322 248999999999998887653
No 277
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=33.25 E-value=4.9e+02 Score=25.75 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=15.8
Q ss_pred EEEEEeCCHHHHHHHHHHh
Q 018554 58 CCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 58 ~aFV~f~~~~~A~~Ai~~l 76 (354)
+|+|+=++.|..++|++.+
T Consensus 206 H~~Isadt~eki~~Ai~vi 224 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIAVI 224 (554)
T ss_pred eEEEecchHHHHHHHHHHH
Confidence 7899999998888888754
No 278
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.16 E-value=42 Score=31.05 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=22.7
Q ss_pred EEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 146 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 146 afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
|||+|++..+|..|++.+..... ..++++.|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-----~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-----NSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-----CCceEeeC
Confidence 79999999999999987655431 23455555
No 279
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=33.05 E-value=2.5e+02 Score=22.25 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=40.8
Q ss_pred CCHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 114 VSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 114 ~t~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
.+-+.+.+..++-| .++++..-. +...|+|++.++..+|.+.|... +. .+-.|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~-------~~~~irf~~~~~Ql~Ak~vL~~~--L~-~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEN-------DSLLIRFDSPEQSAAAKEVLDRT--LP-HGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeC-------CEEEEEECCHHHHHHHHHHHHHH--cC-CCCEEEEecCC
Confidence 46677888888777 455655543 36889999999999999988864 32 22445555543
No 280
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=32.96 E-value=1.4e+02 Score=22.95 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEeeCCC----CCCcccEEEEEeCCHHHHHH
Q 018554 24 KHMTEAQLLAMFKE-FALVDEVNIIKDKT----TRASRGCCFVICPSRQEADK 71 (354)
Q Consensus 24 ~~~te~~L~~~F~~-~G~v~~i~i~~d~~----tg~~~G~aFV~f~~~~~A~~ 71 (354)
..-+..||++.+.+ +|.=.++.++..-. .++++||+-| |.|.+.+.+
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 56788899987776 77645555554433 3577788776 666666654
No 281
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=32.83 E-value=1.3e+02 Score=20.94 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=36.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCC
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYET 152 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~ 152 (354)
.+|.|.++.-......+.+.+..-.-|.++++-.+ ++-++|.|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----cCeEEEEEcC
Confidence 45778888777778888999888877899888876 5568999988
No 282
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=32.59 E-value=1.4e+02 Score=19.15 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=29.8
Q ss_pred HHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 018554 117 AEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 117 ~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai 160 (354)
.++.+.|.+.| .|+.+.+.... ..++...+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~--~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR--GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc--CCcEEEEEEECCHHHHHHHh
Confidence 45667777776 58888776543 23677888889988877765
No 283
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=32.15 E-value=1.7e+02 Score=20.44 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCC---HHHHHHHHHHhCC
Q 018554 116 EAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYET---KEQALAALEAING 165 (354)
Q Consensus 116 ~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~---~~~A~~Ai~~l~g 165 (354)
-.++.+.|.++| .|..+...........-.-||.++. .++..++++.|..
T Consensus 15 L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 15 LYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 456778888887 5778765554433333445566663 5666677777665
No 284
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=31.70 E-value=77 Score=27.15 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=35.5
Q ss_pred CHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 115 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 115 t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
+.++.++++..++.-. +.|-.| +...|-+.+...+.++|.+|++.+-....+......|.|+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad--Gla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD--GLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES--SSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CHHHHHHHHHhcCCCc-eEEccC--CCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 5677777777765422 333334 3333344566799999999998774323343233344443
No 285
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=30.52 E-value=14 Score=34.23 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 018554 28 EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (354)
Q Consensus 28 e~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~ 79 (354)
...+.+++.+.|.|..-.+.+-. +.|.+||..-..++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 46788888999987765555544 4578999999999999999998654
No 286
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=30.31 E-value=3.6e+02 Score=25.90 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHH
Q 018554 64 PSRQEADKAVNA 75 (354)
Q Consensus 64 ~~~~~A~~Ai~~ 75 (354)
.++|+-.+||+.
T Consensus 164 ~EeEdiaKAi~l 175 (462)
T KOG2199|consen 164 QEEEDIAKAIEL 175 (462)
T ss_pred ccHHHHHHHHHh
Confidence 344566667653
No 287
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=29.97 E-value=1e+02 Score=22.54 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=31.8
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeC
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 151 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~ 151 (354)
..-+|||+++..+-|.-...+.+..++-.-+.+..+.+ ..||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC--CCCEEEEEeC
Confidence 35699999998877765555555555544455555544 4788888773
No 288
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=29.70 E-value=3.2e+02 Score=22.48 Aligned_cols=123 Identities=12% Similarity=0.088 Sum_probs=67.6
Q ss_pred HhhcC-CeeEEEEeeCCCCC-CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeeccccccccccceEEEecCCC
Q 018554 35 FKEFA-LVDEVNIIKDKTTR-ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPK 112 (354)
Q Consensus 35 F~~~G-~v~~i~i~~d~~tg-~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~~~~~~~~~~~l~V~~l~~ 112 (354)
+++|| .|..|.--+++.+| +-.----++..+.+.+.+.++.+ . ..| .+.+++. ..........+.||.+-.
T Consensus 26 ls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~-e---~~G-i~I~~~d--g~~~~~~~~vvLIGhiv~ 98 (170)
T COG2061 26 LSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLL-E---EEG-IIIIRFD--GARLREKTDVVLIGHIVH 98 (170)
T ss_pred hhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHH-H---hCC-cEEEEec--CcCcceeEeEEEEEeeec
Confidence 45666 47777777776643 22222333444556666666655 1 111 1222222 222222356788988854
Q ss_pred CCCHHHHHHhhccCC--CeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 113 NVSEAEVSALFSIYG--TIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 113 ~~t~~~l~~~F~~~G--~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
.--.+.+.++ ..-| +|.++.+.-. ..+.|....-+...+++.-++|++.++.
T Consensus 99 tdiqDTId~I-n~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~e 153 (170)
T COG2061 99 TDIQDTIDRI-NSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKE 153 (170)
T ss_pred CcHHHHHHHh-hccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHHH
Confidence 4333333333 3334 6888776543 5666665556666788888899887765
No 289
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=28.70 E-value=1e+02 Score=23.19 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=29.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCC
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPS 65 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~ 65 (354)
-..-||||+++..+-|.--..+-+.++. -++.++... ....||.|-.+.+
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~--~~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWAT--NTESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcC--CCCCCcEEEecCC
Confidence 3456999999877666544444444543 233333322 1244999988764
No 290
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=28.60 E-value=49 Score=27.88 Aligned_cols=74 Identities=12% Similarity=0.209 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCCC-CH----HHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 14 RVKLFVGQVPKHM-TE----AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 14 ~~~lfVg~Lp~~~-te----~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
..++++.+|+.++ ++ ....++|..|-+..-..+++ +.++.-|.|.+.+.|..|.-.+++.. +.++ ..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~-f~~~-~~ 81 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTS-FNGK-NE 81 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcc-cCCC-ce
Confidence 3457777777543 22 23445565555544444443 44577899999999999999988766 4442 24
Q ss_pred ceeeccc
Q 018554 89 LQVKYAD 95 (354)
Q Consensus 89 l~v~~~~ 95 (354)
++.-+++
T Consensus 82 ~k~yfaQ 88 (193)
T KOG4019|consen 82 LKLYFAQ 88 (193)
T ss_pred EEEEEcc
Confidence 4444443
No 291
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.07 E-value=56 Score=23.65 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.8
Q ss_pred cccEEEEEeCCHHHHHHHHHHhc
Q 018554 55 SRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 55 ~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
-+||-|||=.+.+++.+|++.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~ 65 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIR 65 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-T
T ss_pred CceEEEEEeCCHHHHHHHHhccc
Confidence 67999999999999999998654
No 292
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=27.66 E-value=98 Score=23.26 Aligned_cols=49 Identities=8% Similarity=0.172 Sum_probs=30.2
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCC
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYET 152 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~ 152 (354)
..-+|||+++..+-|.--..+-+.++.-.-+.+..+++ ..||.|-++.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~--eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNT--ESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCC--CCCcEEEecCC
Confidence 35699999988776654444445555433344444432 24899988766
No 293
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=27.59 E-value=1.3e+02 Score=30.89 Aligned_cols=79 Identities=13% Similarity=0.263 Sum_probs=51.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCCCCccc-----------eeeccccccc--------cccceEEEecCCCCCCHHH
Q 018554 58 CCFVICPSRQEADKAVNACHNKKTLPGASSPL-----------QVKYADGELE--------RLEHKLFIGMLPKNVSEAE 118 (354)
Q Consensus 58 ~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l-----------~v~~~~~~~~--------~~~~~l~V~~l~~~~t~~~ 118 (354)
.|++++.+.+.-+-..+.++....+.|...-+ -++|.+.... .....+|+.++..++.++.
T Consensus 238 ~c~~t~t~~~t~~ii~~~~~~s~~~~g~i~~~gpRYCpsiE~k~~rf~~~~~h~v~lepeg~~~~~~y~~G~stslp~~~ 317 (618)
T PRK05192 238 PCYITYTNEETHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDRHQIFLEPEGLDTNEVYPNGISTSLPEDV 317 (618)
T ss_pred eCCCCcCcHHHHHHHHhhcccccCcCcccCCCCCCCCCCHHHHhhhcCCCCCceEEEecCCCCCCEEeccCccCCCCHHH
Confidence 38888888886666666666554444421111 1123322211 1256799999999999999
Q ss_pred HHHhhccCCCeeEEEEee
Q 018554 119 VSALFSIYGTIKDLQILR 136 (354)
Q Consensus 119 l~~~F~~~G~v~~i~i~~ 136 (354)
=.++|...--.+.++|++
T Consensus 318 Q~~~~r~ipGle~a~i~r 335 (618)
T PRK05192 318 QLEMLRSIPGLENAEILR 335 (618)
T ss_pred HHHHHhcCcCccceeEee
Confidence 889998877788888886
No 294
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=27.49 E-value=1.9e+02 Score=28.85 Aligned_cols=50 Identities=22% Similarity=0.182 Sum_probs=37.9
Q ss_pred CHHHHHHHHh----hcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 018554 27 TEAQLLAMFK----EFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 27 te~~L~~~F~----~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
+.-+|..+|. .+|-|.++.+...+.. +.+...++.|.+.++|.+|+..+.
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHHH
Confidence 3457777776 5788999888776543 345577899999999999998764
No 295
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=27.28 E-value=2.5e+02 Score=20.57 Aligned_cols=46 Identities=26% Similarity=0.229 Sum_probs=33.6
Q ss_pred HHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018554 116 EAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (354)
Q Consensus 116 ~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 164 (354)
.+.++++++++| +++++.+... ..-.+..+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G---~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG---EYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC---CCCEEEEEEcCCHHHHHHHHHHHH
Confidence 345777887776 6888887754 334678889999999988875554
No 296
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.22 E-value=2.2e+02 Score=19.84 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCeeEEEEeeCCCCCCc-ccEEEEEeCCHHHHHHHHHHhc
Q 018554 29 AQLLAMFKEFALVDEVNIIKDKTTRAS-RGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 29 ~~L~~~F~~~G~v~~i~i~~d~~tg~~-~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
++|++.+.++| +.-..+ +|.. -++.|+.+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~-----sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKM-----SGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEE-----ETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceec-----CCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46777778888 333333 2321 3688999999999999988763
No 297
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.18 E-value=62 Score=28.03 Aligned_cols=13 Identities=31% Similarity=0.306 Sum_probs=10.6
Q ss_pred CcccEEEEEeCCH
Q 018554 54 ASRGCCFVICPSR 66 (354)
Q Consensus 54 ~~~G~aFV~f~~~ 66 (354)
.+|-|+||+|.+.
T Consensus 107 ~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 107 ASRPYAFIEFDTF 119 (216)
T ss_pred cCCCeeEEehhHH
Confidence 5778999999853
No 298
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=26.90 E-value=66 Score=22.04 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=23.6
Q ss_pred CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEE
Q 018554 27 TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFV 61 (354)
Q Consensus 27 te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV 61 (354)
-|.+|.+.|-+--.|.++.|...|. ..+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKr--i~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKR--IRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEe--eeCCceeE
Confidence 4567778887778899999988764 34455665
No 299
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=26.52 E-value=32 Score=32.63 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=48.5
Q ss_pred cceEEEecCCCCCCHH--------HHHHhhcc--CCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHH
Q 018554 102 EHKLFIGMLPKNVSEA--------EVSALFSI--YGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAAL 160 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~--------~l~~~F~~--~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai 160 (354)
.+.+|+.++....+.+ ++...|.. ++.+..|...++. +..++|-.|++|...+.|+++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4568888887665544 89999988 6788888888884 7777899999999999999987
No 300
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=26.02 E-value=1.3e+02 Score=25.48 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=49.6
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeeccccccccccceEEEecCCCC------
Q 018554 40 LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN------ 113 (354)
Q Consensus 40 ~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~~~~~~~~~~~l~V~~l~~~------ 113 (354)
.+.-|..++|+ +.|.+.++|.+-+++ .+++.. ...+++....+..+...++|||--+.-.
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~--e~KlWr--eteI~I~~g~p~VNE~TkkIYICPFTGKVF~DNt 101 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEE--EGKLWR--ETEIKIQSGKPSVNEQTKKIYICPFTGKVFGDNT 101 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHH--hcchhe--eeeEEEecCCcccccccceEEEcCCcCccccCCC
Confidence 34556677776 478899999988887 334443 3667777777777777778877433221
Q ss_pred --CCHHHHHHhhccCC
Q 018554 114 --VSEAEVSALFSIYG 127 (354)
Q Consensus 114 --~t~~~l~~~F~~~G 127 (354)
-..|.|.+-.++|-
T Consensus 102 ~~nPQDAIYDWvSkCP 117 (238)
T PF10915_consen 102 HPNPQDAIYDWVSKCP 117 (238)
T ss_pred CCChHHHHHHHHhhCC
Confidence 13456888888875
No 301
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=25.75 E-value=2.6e+02 Score=20.24 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHhh-cCC----eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 018554 24 KHMTEAQLLAMFKE-FAL----VDEVNIIKDKTTRASRGCCFVICPSRQEADKA 72 (354)
Q Consensus 24 ~~~te~~L~~~F~~-~G~----v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~A 72 (354)
...+.+||++.+.+ ++. |.-..+...-..+++.|||.| |+|.+.+.+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 45678888887776 553 222233344444677788776 6666665543
No 302
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.47 E-value=2.1e+02 Score=19.07 Aligned_cols=45 Identities=29% Similarity=0.296 Sum_probs=29.6
Q ss_pred CHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018554 115 SEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (354)
Q Consensus 115 t~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 162 (354)
.-.+|.++|.+.| .|+++......+ +++.-+.+++.+.|.+++++
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHH
Confidence 4456788887777 688887755422 45555666776677766654
No 303
>PRK11901 hypothetical protein; Reviewed
Probab=25.20 E-value=1.4e+02 Score=27.66 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=40.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccE--EEEEeCCHHHHHHHHHHh
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC--CFVICPSRQEADKAVNAC 76 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~--aFV~f~~~~~A~~Ai~~l 76 (354)
.....+|=|.. --+++.|.+|..+.+ +..++|.+....|+.- | -+=.|.+.++|+.|++.|
T Consensus 242 p~~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 242 PASHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred CCCCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhC
Confidence 34455555554 356888999888886 3556666654444442 2 233689999999999886
No 304
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=24.54 E-value=6.4e+02 Score=24.30 Aligned_cols=6 Identities=0% Similarity=0.224 Sum_probs=2.1
Q ss_pred HHHHHh
Q 018554 31 LLAMFK 36 (354)
Q Consensus 31 L~~~F~ 36 (354)
|.+..+
T Consensus 52 i~~~m~ 57 (487)
T KOG4672|consen 52 ITSKME 57 (487)
T ss_pred HHHHHH
Confidence 333333
No 305
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.30 E-value=51 Score=28.95 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.5
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~ 133 (354)
.++||+-|+|..+|++.|.++.+++|-++.+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 56899999999999999999999998655543
No 306
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.64 E-value=75 Score=19.06 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHhhcCCe
Q 018554 25 HMTEAQLLAMFKEFALV 41 (354)
Q Consensus 25 ~~te~~L~~~F~~~G~v 41 (354)
.+++++|++++..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999999854
No 307
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=23.41 E-value=77 Score=30.17 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=31.4
Q ss_pred ccceEEEecCCCC-CCHHHHHHhhccC----CCeeEEEEeeCCCC
Q 018554 101 LEHKLFIGMLPKN-VSEAEVSALFSIY----GTIKDLQILRGSQQ 140 (354)
Q Consensus 101 ~~~~l~V~~l~~~-~t~~~l~~~F~~~----G~v~~i~i~~~~~~ 140 (354)
..++|-|-||.|. +...+|...|+.| |.+..|.|.....|
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefG 189 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFG 189 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhh
Confidence 3678999999985 7788999999877 57888888765444
No 308
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=23.34 E-value=2.5e+02 Score=20.93 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=34.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc--------CCeeEEEEeeC-----CCCCCccc-EEEEEeCCHHHHHHHHHH
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKEF--------ALVDEVNIIKD-----KTTRASRG-CCFVICPSRQEADKAVNA 75 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~~--------G~v~~i~i~~d-----~~tg~~~G-~aFV~f~~~~~A~~Ai~~ 75 (354)
++|| |..+++++++.++.+++ |+|.++...-. ...+..+| |.++.|.-..++.+.++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 3455 45677888777665554 45655532211 11245667 478888877777777765
No 309
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=23.01 E-value=2.3e+02 Score=21.38 Aligned_cols=43 Identities=14% Similarity=0.338 Sum_probs=32.7
Q ss_pred HHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 018554 117 AEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (354)
Q Consensus 117 ~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 166 (354)
+++.+.+++-| .++++..- .+...|+|++.++-.+|.+.|+..
T Consensus 49 ~~v~~~L~~~~I~~k~i~~~-------~~~llirf~~~~~Ql~Ak~~L~~~ 92 (101)
T PF13721_consen 49 FQVEQALKAAGIAVKSIEQE-------GDSLLIRFDSTDQQLKAKDVLSKA 92 (101)
T ss_pred HHHHHHHHHCCCCcceEEee-------CCEEEEEECCHHHHHHHHHHHHHH
Confidence 57888888777 35555543 346789999999999999888764
No 310
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.54 E-value=2e+02 Score=21.47 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.7
Q ss_pred ccEEEEEeCCHHHHHHHHH
Q 018554 56 RGCCFVICPSRQEADKAVN 74 (354)
Q Consensus 56 ~G~aFV~f~~~~~A~~Ai~ 74 (354)
.....|+|.|.+.|..|.+
T Consensus 53 tr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 53 TRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred ccEEEEEcCCHHHHHHHhc
Confidence 4579999999999887754
No 311
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.26 E-value=2.5e+02 Score=27.98 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=35.3
Q ss_pred HHHHHHhhc----cCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018554 116 EAEVSALFS----IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (354)
Q Consensus 116 ~~~l~~~F~----~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 164 (354)
.-+|..+|. .+|.|+++.+-..+....+...++.|.+.++|.+|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 346777764 5677888877554443445677889999999999987754
No 312
>PHA01632 hypothetical protein
Probab=22.05 E-value=99 Score=20.48 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=16.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh
Q 018554 17 LFVGQVPKHMTEAQLLAMFKE 37 (354)
Q Consensus 17 lfVg~Lp~~~te~~L~~~F~~ 37 (354)
|.|-.+|..-||++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345688999999999987754
No 313
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=21.63 E-value=1.8e+02 Score=21.19 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=21.1
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEeCC
Q 018554 40 LVDEVNIIKDKTTRASRGCCFVICPS 65 (354)
Q Consensus 40 ~v~~i~i~~d~~tg~~~G~aFV~f~~ 65 (354)
+|.+|+|.+-...++-++||=|+|.|
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888776668899999999986
No 314
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=21.54 E-value=81 Score=23.20 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeeCCCCCCcccEEEEEeCC
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPS 65 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~-~G~v~~i~i~~d~~tg~~~G~aFV~f~~ 65 (354)
-..-||||+++..+-|.--..+-+. .+. -.+.++... ....||.|-.+.+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~--~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSS--NTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeC--CCCCCcEEEecCC
Confidence 4456999999877665533333333 232 233333332 2356898887654
No 315
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=21.25 E-value=2.4e+02 Score=18.24 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=27.4
Q ss_pred CHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEE-EeCCHHHHHHHHHHh
Q 018554 115 SEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFL-KYETKEQALAALEAI 163 (354)
Q Consensus 115 t~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV-~f~~~~~A~~Ai~~l 163 (354)
.-.+|.++|...| .|..+....+..+ ....++ .-.+..+..+++++|
T Consensus 13 ~l~~v~~~la~~~inI~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 13 ILADVTEILADHGINIDSISQSSDKDG--VGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEESST--TEEEEEEEEEEGHGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHeEEEecCCC--ceEEEEEEECCCCCHHHHHHHH
Confidence 3456778887777 5888888776543 233333 334445555555544
No 316
>PRK10905 cell division protein DamX; Validated
Probab=20.86 E-value=1.9e+02 Score=26.85 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=37.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcc-cEEEEEeCCHHHHHHHHHHh
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-GCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~-G~aFV~f~~~~~A~~Ai~~l 76 (354)
...+|=|+. -.+++.|++|..+.|. ....+......|+.. -.-+=.|.+.++|++|++.|
T Consensus 246 ~~YTLQL~A---~Ss~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakL 306 (328)
T PRK10905 246 SHYTLQLSS---SSNYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTL 306 (328)
T ss_pred CceEEEEEe---cCCHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHC
Confidence 444555554 4567888888888864 444444443334432 12334689999999999986
No 317
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=20.83 E-value=4.1e+02 Score=24.77 Aligned_cols=111 Identities=20% Similarity=0.309 Sum_probs=58.2
Q ss_pred CCCCCCCHHHHHHHH----hhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecccc
Q 018554 21 QVPKHMTEAQLLAMF----KEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 96 (354)
Q Consensus 21 ~Lp~~~te~~L~~~F----~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~~~ 96 (354)
|.+++-+-|-++..| ++||.-.+++|.+--. -.+|=+-|.|.-.-. +.+ +++... ...
T Consensus 119 ~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~--~~l-------------~~i~l~-~~g 180 (326)
T cd00874 119 DVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS--KLL-------------PPLLLE-ERG 180 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc--cCC-------------Ccceee-cCC
Confidence 446666666666644 7799766777766422 234445555532211 001 111111 111
Q ss_pred ccccccceEEEecCCCCCCHHHHH---Hhhcc-CCCeeEEEEeeC-CCCCcceEEEEEeC
Q 018554 97 ELERLEHKLFIGMLPKNVSEAEVS---ALFSI-YGTIKDLQILRG-SQQTSKGCAFLKYE 151 (354)
Q Consensus 97 ~~~~~~~~l~V~~l~~~~t~~~l~---~~F~~-~G~v~~i~i~~~-~~~~~~g~afV~f~ 151 (354)
+..+..-..++.+|+.++.+.++. +.+.+ ++ .++.+..+ ..+.+.|++.+.+.
T Consensus 181 ~i~~irg~~~~~~l~~~va~r~~~~a~~~L~~~~~--~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 181 EIEKIRGISHAANLPPHVAERQAEAAAALLRKALG--LQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred CeEEEEEEEEEccCCHHHHHHHHHHHHHHHhhccC--CCeEEEEEecCCCCCCEEEEEEE
Confidence 222223467889999888877654 44555 33 34444444 23566777766554
No 318
>PF14893 PNMA: PNMA
Probab=20.44 E-value=73 Score=29.80 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhh
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKE 37 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~ 37 (354)
-...+.|.|.+||.+|++++|.+.+..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHH
Confidence 346678999999999999999988765
No 319
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.43 E-value=2.5e+02 Score=22.82 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=22.9
Q ss_pred eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 41 VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 41 v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
|.+|.+... ..||.||+....+++..+++.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v 66 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGI 66 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcC
Confidence 555554432 5799999999888888888654
No 320
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=20.33 E-value=7e+02 Score=23.47 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=61.4
Q ss_pred CeEEEc---CCCCCCCHHHHHHH----HhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 15 VKLFVG---QVPKHMTEAQLLAM----FKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 15 ~~lfVg---~Lp~~~te~~L~~~----F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.+|-+. |.+++-+-|-++.. +++||.-.+++|.+--. -.+|=+-|.|.-.-. .++.+ . +....
T Consensus 114 ~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~i~rRG~--yP~GGGeV~~~i~p~---~l~pi---~-l~e~G- 183 (343)
T PRK04204 114 SRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEIELLRRGF--YPAGGGEVALEVEPS---KLRPL---E-LLERG- 183 (343)
T ss_pred eEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEEeCCc--cCCCCeEEEEEEccC---Cccce---e-eccCC-
Confidence 344444 34566666666654 56789766777766422 234446666643221 11111 1 11111
Q ss_pred cceeeccccccccccceEEEecCCCCCCHHHHHHh-----hccCCCeeEEEEeeCCCCCcceEEEEEe
Q 018554 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSAL-----FSIYGTIKDLQILRGSQQTSKGCAFLKY 150 (354)
Q Consensus 88 ~l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~-----F~~~G~v~~i~i~~~~~~~~~g~afV~f 150 (354)
+..+.....|+.+|+.++.+.++... +..+....++.+.....+.+.|++.+-+
T Consensus 184 ---------~i~~irg~~~~~~l~~~ia~R~~~~a~~~~~l~~~~~~~~i~~~~~~~~~s~G~gi~L~ 242 (343)
T PRK04204 184 ---------ELLRIRGISHVANLPEHVAERQAKAAAELLALSLGLIEIEINVEELSRGLGPGSGIVLW 242 (343)
T ss_pred ---------CcEEEEEEEEecCCCHHHHHHHHHHHhhhhhhhccCCCceeEEeeccCCCCCceEEEEE
Confidence 12222346788999998888776653 3333333344444345566677766644
No 321
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=20.01 E-value=5e+02 Score=26.77 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh---cCCeeEEEEeeCCCCCCcccEEE-EEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKE---FALVDEVNIIKDKTTRASRGCCF-VICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~---~G~v~~i~i~~d~~tg~~~G~aF-V~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.++|.|..||..++.+.|.+...+ -|++. |.-++|-. .+ +..| |++.....++..++.|-.. ..+
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s-~~--~v~i~i~l~~~~~~~~~~~~Lyk~-------t~l 288 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYT-AE--NVEIEIKLPRGVYASEVIEALYAY-------TDC 288 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCC-CC--cEEEEEEECCCCCHHHHHHHHHHh-------cCc
Confidence 468999999999999999987554 35655 66567753 22 3444 5566666777777665321 233
Q ss_pred eeeccccccccccceEEEecCCCCCCHHHHHHhhcc
Q 018554 90 QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125 (354)
Q Consensus 90 ~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~ 125 (354)
+..++- ...+.+.+.|..++-.+|.+.|-.
T Consensus 289 q~s~~~------n~~~i~~~~p~~~~l~~il~~~~~ 318 (635)
T PRK09631 289 EVSISV------NLLVIKDRYPVIYTVTDIIKFHAE 318 (635)
T ss_pred eeEeee------eEEEEECCcCcCCCHHHHHHHHHH
Confidence 443332 233445666766776666665543
Done!