Query 018554
Match_columns 354
No_of_seqs 312 out of 2432
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 17:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 9E-38 3.1E-42 273.0 21.3 175 10-191 11-188 (213)
2 3nmr_A Cugbp ELAV-like family 100.0 2E-37 6.8E-42 261.7 22.6 170 13-182 2-175 (175)
3 1fxl_A Paraneoplastic encephal 100.0 1.9E-35 6.5E-40 247.4 22.2 165 13-181 1-167 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.6E-35 5.4E-40 248.5 20.8 165 13-181 2-168 (168)
5 1l3k_A Heterogeneous nuclear r 100.0 8.2E-35 2.8E-39 250.4 20.7 174 7-188 6-187 (196)
6 2qfj_A FBP-interacting repress 100.0 2.7E-34 9.3E-39 250.9 22.2 169 10-184 24-205 (216)
7 3md3_A Nuclear and cytoplasmic 100.0 2.8E-34 9.7E-39 240.0 20.6 162 15-183 1-166 (166)
8 2cjk_A Nuclear polyadenylated 100.0 1.1E-34 3.8E-39 243.1 14.9 163 13-184 2-166 (167)
9 3smz_A Protein raver-1, ribonu 100.0 1.4E-32 4.6E-37 250.5 22.9 177 12-194 93-274 (284)
10 3tyt_A Heterogeneous nuclear r 100.0 1.5E-32 5.2E-37 238.0 17.0 160 12-181 2-204 (205)
11 1fje_B Nucleolin RBD12, protei 100.0 7.1E-33 2.4E-37 234.1 11.2 164 9-184 8-174 (175)
12 3pgw_A U1-A; protein-RNA compl 100.0 1.7E-31 5.8E-36 243.0 20.7 162 9-182 4-281 (282)
13 2g4b_A Splicing factor U2AF 65 100.0 1.6E-31 5.3E-36 225.0 18.1 157 12-181 2-171 (172)
14 2yh0_A Splicing factor U2AF 65 100.0 1E-32 3.5E-37 237.6 10.5 160 12-184 2-194 (198)
15 2adc_A Polypyrimidine tract-bi 100.0 4.7E-31 1.6E-35 232.9 20.6 165 5-184 25-228 (229)
16 3sde_A Paraspeckle component 1 100.0 3.5E-31 1.2E-35 238.3 19.5 163 8-184 16-179 (261)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-30 4.1E-35 238.6 17.1 165 12-184 115-291 (292)
18 1qm9_A Polypyrimidine tract-bi 100.0 1.2E-30 4E-35 225.0 15.3 156 13-183 2-196 (198)
19 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-30 6E-35 237.4 17.1 164 8-186 35-199 (292)
20 3smz_A Protein raver-1, ribonu 100.0 3E-29 1E-33 228.4 20.4 158 9-184 17-175 (284)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.2E-23 4E-28 174.7 11.2 137 43-184 2-150 (158)
22 4f25_A Polyadenylate-binding p 99.9 6E-23 2E-27 161.1 9.7 101 13-118 4-113 (115)
23 4fxv_A ELAV-like protein 1; RN 99.9 2E-21 7E-26 148.0 10.9 83 11-96 16-98 (99)
24 2i2y_A Fusion protein consists 99.8 3.3E-21 1.1E-25 158.4 10.4 121 53-184 10-148 (150)
25 2dgp_A Bruno-like 4, RNA bindi 99.8 2.1E-20 7.3E-25 144.2 10.9 96 5-100 4-99 (106)
26 3s8s_A Histone-lysine N-methyl 99.8 1.9E-20 6.6E-25 145.4 10.6 85 11-98 3-87 (110)
27 2lxi_A RNA-binding protein 10; 99.8 2.9E-21 9.9E-26 144.9 5.5 84 14-99 1-85 (91)
28 2lkz_A RNA-binding protein 5; 99.8 8.1E-21 2.8E-25 143.3 6.9 86 9-96 4-94 (95)
29 2dnh_A Bruno-like 5, RNA bindi 99.8 9.5E-20 3.2E-24 140.3 13.0 94 6-100 7-100 (105)
30 4fxv_A ELAV-like protein 1; RN 99.8 1.1E-19 3.9E-24 138.3 11.5 79 102-183 19-98 (99)
31 2cpz_A CUG triplet repeat RNA- 99.8 1.4E-19 4.7E-24 141.9 11.0 92 6-100 17-108 (115)
32 2dgs_A DAZ-associated protein 99.8 2.4E-19 8.1E-24 136.6 11.7 88 8-99 4-91 (99)
33 3lqv_A PRE-mRNA branch site pr 99.8 8.6E-20 3E-24 143.0 9.4 106 10-128 4-109 (115)
34 2cq0_A Eukaryotic translation 99.8 1.1E-19 3.9E-24 139.4 9.9 91 6-99 7-97 (103)
35 3s8s_A Histone-lysine N-methyl 99.8 7.4E-19 2.5E-23 136.4 14.3 85 102-189 6-91 (110)
36 1x5u_A Splicing factor 3B subu 99.8 2.2E-19 7.6E-24 138.2 11.3 92 5-99 6-97 (105)
37 2dnz_A Probable RNA-binding pr 99.8 3E-19 1E-23 134.8 11.8 86 11-99 2-87 (95)
38 2dgo_A Cytotoxic granule-assoc 99.8 2.4E-19 8.1E-24 140.5 11.6 93 5-100 6-98 (115)
39 2dnm_A SRP46 splicing factor; 99.8 1.4E-19 4.8E-24 138.9 10.0 92 5-99 4-95 (103)
40 1p27_B RNA-binding protein 8A; 99.8 3E-19 1E-23 137.8 11.6 88 8-98 17-104 (106)
41 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.2E-19 7.6E-24 133.3 10.0 83 12-97 4-86 (87)
42 2dhg_A TRNA selenocysteine ass 99.8 4.2E-19 1.4E-23 136.4 11.8 89 8-99 3-92 (104)
43 2kxn_B Transformer-2 protein h 99.8 2.8E-19 9.4E-24 142.9 11.0 89 7-98 39-127 (129)
44 1x5s_A Cold-inducible RNA-bind 99.8 3.1E-19 1.1E-23 136.6 10.9 89 8-99 6-94 (102)
45 3p5t_L Cleavage and polyadenyl 99.8 1.1E-19 3.8E-24 135.9 8.1 82 15-99 2-85 (90)
46 2cqc_A Arginine/serine-rich sp 99.8 2.3E-19 8E-24 135.4 10.0 89 5-96 6-94 (95)
47 2jrs_A RNA-binding protein 39; 99.8 4.4E-19 1.5E-23 137.3 11.7 90 6-98 18-107 (108)
48 2cph_A RNA binding motif prote 99.8 4.9E-19 1.7E-23 136.8 11.7 91 6-99 7-99 (107)
49 2d9p_A Polyadenylate-binding p 99.8 4.1E-19 1.4E-23 136.2 11.3 91 5-100 6-96 (103)
50 1whw_A Hypothetical protein ri 99.8 2.3E-19 8E-24 136.6 9.8 88 9-99 3-90 (99)
51 2div_A TRNA selenocysteine ass 99.8 3.1E-19 1.1E-23 135.9 10.4 89 9-98 4-95 (99)
52 3md1_A Nuclear and cytoplasmic 99.8 3.7E-19 1.3E-23 130.8 10.2 81 14-97 1-81 (83)
53 2do4_A Squamous cell carcinoma 99.8 5.2E-19 1.8E-23 134.9 11.4 88 8-99 11-98 (100)
54 1x4h_A RNA-binding protein 28; 99.8 4.4E-19 1.5E-23 138.0 10.7 90 7-99 8-103 (111)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.4E-19 1.1E-23 131.7 9.5 83 10-95 3-85 (85)
56 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.8E-19 6E-24 138.1 8.0 90 7-99 5-94 (102)
57 2x1f_A MRNA 3'-END-processing 99.8 4.8E-19 1.6E-23 134.1 10.1 84 13-99 1-84 (96)
58 2lea_A Serine/arginine-rich sp 99.8 1.1E-19 3.7E-24 146.5 6.6 120 58-184 6-127 (135)
59 3ns6_A Eukaryotic translation 99.8 1.4E-19 4.9E-24 138.1 6.9 85 11-97 3-93 (100)
60 2la6_A RNA-binding protein FUS 99.8 9.3E-19 3.2E-23 133.3 11.4 85 8-95 7-99 (99)
61 2e5h_A Zinc finger CCHC-type a 99.8 4.5E-19 1.5E-23 133.6 9.5 86 7-95 9-94 (94)
62 2hvz_A Splicing factor, argini 99.8 2.5E-19 8.6E-24 137.0 7.9 89 15-111 1-100 (101)
63 1sjq_A Polypyrimidine tract-bi 99.8 5.7E-19 1.9E-23 134.7 9.8 83 10-100 12-95 (105)
64 1oo0_B CG8781-PA, drosophila Y 99.8 5.6E-19 1.9E-23 137.2 9.9 89 8-99 20-108 (110)
65 1u6f_A Tcubp1, RNA-binding pro 99.8 5.9E-19 2E-23 143.0 10.4 90 8-100 36-125 (139)
66 2khc_A Testis-specific RNP-typ 99.8 3.3E-19 1.1E-23 140.3 8.5 86 7-95 33-118 (118)
67 2cpf_A RNA binding motif prote 99.8 5.1E-19 1.7E-23 134.4 9.1 86 11-99 2-90 (98)
68 1x5t_A Splicing factor 3B subu 99.8 3.6E-19 1.2E-23 134.7 8.2 87 11-100 2-89 (96)
69 2m2b_A RNA-binding protein 10; 99.8 2.3E-19 7.8E-24 144.0 7.4 88 8-99 17-110 (131)
70 2lkz_A RNA-binding protein 5; 99.8 3E-19 1E-23 134.6 7.6 80 102-183 9-94 (95)
71 2fy1_A RNA-binding motif prote 99.8 9.7E-19 3.3E-23 137.2 10.8 85 10-98 3-87 (116)
72 2cqd_A RNA-binding region cont 99.8 6.8E-19 2.3E-23 138.1 9.8 88 6-97 9-96 (116)
73 2dh8_A DAZ-associated protein 99.8 5.8E-19 2E-23 135.9 9.0 90 6-99 8-97 (105)
74 2dng_A Eukaryotic translation 99.8 1E-18 3.5E-23 134.1 10.2 89 6-99 7-95 (103)
75 3n9u_C Cleavage and polyadenyl 99.8 7.2E-19 2.5E-23 145.1 9.9 83 12-97 53-137 (156)
76 1wi8_A EIF-4B, eukaryotic tran 99.8 8E-19 2.7E-23 134.9 9.4 91 5-100 6-97 (104)
77 2cpe_A RNA-binding protein EWS 99.8 7.5E-19 2.6E-23 137.1 9.4 89 8-99 9-105 (113)
78 4f25_A Polyadenylate-binding p 99.8 7.5E-19 2.6E-23 137.6 9.3 83 102-188 5-87 (115)
79 1p1t_A Cleavage stimulation fa 99.8 3.9E-19 1.3E-23 136.6 7.4 87 10-99 4-90 (104)
80 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-18 4.3E-23 134.0 10.2 86 101-186 14-99 (105)
81 1x4e_A RNA binding motif, sing 99.8 4.6E-19 1.6E-23 131.0 7.4 82 11-95 2-83 (85)
82 1x5o_A RNA binding motif, sing 99.8 2.7E-18 9.2E-23 134.2 12.1 88 9-97 20-112 (114)
83 1s79_A Lupus LA protein; RRM, 99.8 1E-18 3.5E-23 133.9 9.4 84 8-96 5-88 (103)
84 2ywk_A Putative RNA-binding pr 99.8 1.2E-18 4.2E-23 131.5 9.7 85 7-95 9-93 (95)
85 2lxi_A RNA-binding protein 10; 99.8 2.9E-19 9.8E-24 133.9 5.9 81 102-184 1-83 (91)
86 2rs2_A Musashi-1, RNA-binding 99.8 7.1E-19 2.4E-23 136.4 8.2 88 8-99 19-106 (109)
87 2dgv_A HnRNP M, heterogeneous 99.8 3.8E-18 1.3E-22 127.9 11.8 85 10-99 4-88 (92)
88 3s7r_A Heterogeneous nuclear r 99.8 1.5E-18 5E-23 128.9 9.2 84 7-94 4-87 (87)
89 3ex7_B RNA-binding protein 8A; 99.8 2.2E-18 7.5E-23 137.2 10.5 89 8-99 16-104 (126)
90 2cq3_A RNA-binding protein 9; 99.8 4.1E-18 1.4E-22 130.6 11.7 90 5-99 6-95 (103)
91 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.5E-18 8.7E-23 142.1 11.1 88 9-99 34-121 (156)
92 3ulh_A THO complex subunit 4; 99.8 2.6E-18 8.9E-23 132.7 10.5 84 8-95 23-106 (107)
93 2do0_A HnRNP M, heterogeneous 99.8 3.8E-18 1.3E-22 133.3 11.4 87 8-98 9-95 (114)
94 2dis_A Unnamed protein product 99.8 1.8E-18 6.3E-23 134.0 9.5 87 11-99 5-94 (109)
95 4a8x_A RNA-binding protein wit 99.8 1.4E-18 4.9E-23 129.1 8.3 84 12-98 2-86 (88)
96 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.3E-18 1.1E-22 131.2 10.5 89 7-100 8-96 (103)
97 2cq1_A PTB-like protein L; RRM 99.8 3.1E-18 1E-22 130.5 10.1 88 4-99 5-93 (101)
98 1wex_A Hypothetical protein (r 99.8 4.4E-18 1.5E-22 130.4 10.9 88 4-99 5-93 (104)
99 2wbr_A GW182, gawky, LD47780P; 99.8 2.9E-18 9.8E-23 125.0 9.1 73 13-94 6-78 (89)
100 2cqg_A TDP-43, TAR DNA-binding 99.8 5.2E-18 1.8E-22 130.0 11.1 88 7-99 8-95 (103)
101 2ad9_A Polypyrimidine tract-bi 99.8 3.5E-18 1.2E-22 133.5 10.1 85 7-99 24-109 (119)
102 2mss_A Protein (musashi1); RNA 99.8 1.8E-18 6E-23 124.7 7.7 75 16-94 1-75 (75)
103 3ucg_A Polyadenylate-binding p 99.8 2.9E-18 1E-22 127.7 9.1 81 13-97 5-85 (89)
104 3n9u_C Cleavage and polyadenyl 99.8 7.9E-18 2.7E-22 138.8 12.6 89 102-193 55-146 (156)
105 2cq4_A RNA binding motif prote 99.8 5.1E-19 1.7E-23 138.4 5.1 85 11-99 22-106 (114)
106 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.2E-18 4E-23 126.2 6.5 76 15-94 1-76 (77)
107 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.3E-18 1.1E-22 142.8 10.1 124 61-188 11-156 (165)
108 2dgp_A Bruno-like 4, RNA bindi 99.7 2.5E-18 8.6E-23 132.5 8.7 86 99-184 10-96 (106)
109 2do4_A Squamous cell carcinoma 99.7 8.7E-18 3E-22 128.1 11.6 82 100-184 15-96 (100)
110 3bs9_A Nucleolysin TIA-1 isofo 99.7 8.4E-18 2.9E-22 124.7 11.2 80 102-184 6-86 (87)
111 3md1_A Nuclear and cytoplasmic 99.7 1.1E-17 3.7E-22 122.9 11.5 79 103-184 2-81 (83)
112 2lea_A Serine/arginine-rich sp 99.7 1.4E-18 4.7E-23 140.0 7.3 92 6-100 39-130 (135)
113 2cqp_A RNA-binding protein 12; 99.7 1.5E-18 5.2E-23 131.8 7.1 86 9-97 10-95 (98)
114 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.8E-18 6.1E-23 132.0 7.4 85 8-97 13-98 (100)
115 2ek1_A RNA-binding protein 12; 99.7 1.6E-18 5.3E-23 130.9 6.5 83 10-95 11-93 (95)
116 2dgx_A KIAA0430 protein; RRM d 99.7 4.3E-18 1.5E-22 128.8 8.9 84 10-99 5-92 (96)
117 2ywk_A Putative RNA-binding pr 99.7 1E-17 3.5E-22 126.4 10.9 81 100-183 14-94 (95)
118 2ki2_A SS-DNA binding protein 99.7 1.1E-18 3.6E-23 130.5 5.2 81 15-99 2-82 (90)
119 1p1t_A Cleavage stimulation fa 99.7 6.3E-18 2.1E-22 129.8 9.7 89 99-190 5-94 (104)
120 1x4a_A Splicing factor, argini 99.7 1E-17 3.4E-22 129.9 10.8 86 8-99 16-101 (109)
121 2kt5_A RNA and export factor-b 99.7 7E-18 2.4E-22 133.9 10.2 86 10-99 31-116 (124)
122 1x4b_A Heterogeneous nuclear r 99.7 1.5E-18 5.2E-23 136.1 6.2 86 10-99 23-108 (116)
123 3p5t_L Cleavage and polyadenyl 99.7 2.6E-18 8.9E-23 128.4 7.1 81 103-186 2-85 (90)
124 2kn4_A Immunoglobulin G-bindin 99.7 6.2E-18 2.1E-22 140.0 9.8 87 10-99 66-152 (158)
125 1x4f_A Matrin 3; structural ge 99.7 5.9E-18 2E-22 130.8 8.9 88 4-99 15-104 (112)
126 1wg5_A Heterogeneous nuclear r 99.7 8.3E-18 2.8E-22 129.2 9.7 85 8-97 9-94 (104)
127 2dgw_A Probable RNA-binding pr 99.7 8E-18 2.7E-22 126.0 9.2 85 8-98 4-88 (91)
128 3q2s_C Cleavage and polyadenyl 99.7 4.3E-18 1.5E-22 149.4 8.9 86 101-189 67-155 (229)
129 1whw_A Hypothetical protein ri 99.7 8E-18 2.7E-22 128.0 9.2 82 101-185 7-89 (99)
130 2d9p_A Polyadenylate-binding p 99.7 1.7E-17 5.7E-22 127.2 10.9 81 101-185 14-94 (103)
131 2err_A Ataxin-2-binding protei 99.7 6.1E-18 2.1E-22 131.1 8.5 87 6-97 21-107 (109)
132 2cpy_A RNA-binding protein 12; 99.7 2E-18 6.7E-23 135.0 5.7 85 9-98 10-95 (114)
133 2dnz_A Probable RNA-binding pr 99.7 1.9E-17 6.3E-22 124.9 10.9 80 102-184 5-85 (95)
134 3q2s_C Cleavage and polyadenyl 99.7 4.8E-18 1.6E-22 149.1 8.7 82 13-97 67-150 (229)
135 3r27_A HnRNP L, heterogeneous 99.7 1.1E-17 3.7E-22 126.3 9.4 85 6-98 13-98 (100)
136 2cq0_A Eukaryotic translation 99.7 1.8E-17 6.2E-22 127.0 10.9 82 100-184 13-95 (103)
137 1sjq_A Polypyrimidine tract-bi 99.7 4.4E-18 1.5E-22 129.7 7.3 78 101-185 15-93 (105)
138 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.3E-17 4.5E-22 123.0 9.6 79 101-182 6-85 (85)
139 2cqc_A Arginine/serine-rich sp 99.7 2.6E-17 8.8E-22 124.1 11.4 81 100-183 13-94 (95)
140 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 8E-18 2.7E-22 136.3 9.2 84 8-94 57-140 (140)
141 2dgo_A Cytotoxic granule-assoc 99.7 2.5E-17 8.7E-22 128.8 11.7 82 100-184 13-95 (115)
142 1wel_A RNA-binding protein 12; 99.7 2.4E-18 8.1E-23 136.6 5.8 85 9-97 20-104 (124)
143 2x1f_A MRNA 3'-END-processing 99.7 1.8E-17 6.2E-22 125.3 10.5 83 102-187 2-85 (96)
144 2jwn_A Embryonic polyadenylate 99.7 2.3E-18 7.9E-23 136.6 5.8 85 11-99 33-117 (124)
145 2cpi_A CCR4-NOT transcription 99.7 5.3E-18 1.8E-22 131.9 7.7 87 9-98 10-102 (111)
146 2cpz_A CUG triplet repeat RNA- 99.7 1.6E-17 5.6E-22 129.9 10.5 82 100-184 23-105 (115)
147 3r27_A HnRNP L, heterogeneous 99.7 1.5E-17 5.2E-22 125.5 9.8 82 96-184 15-97 (100)
148 1x4d_A Matrin 3; structural ge 99.7 5.9E-18 2E-22 128.9 7.5 84 7-98 8-93 (102)
149 2fc8_A NCL protein; structure 99.7 1.4E-17 4.8E-22 127.3 9.6 89 5-99 6-94 (102)
150 1s79_A Lupus LA protein; RRM, 99.7 1.2E-17 4.1E-22 127.9 9.2 80 101-184 10-89 (103)
151 1fj7_A Nucleolin RBD1, protein 99.7 1.8E-18 6.1E-23 132.2 4.5 86 10-100 13-98 (101)
152 1wez_A HnRNP H', FTP-3, hetero 99.7 8.9E-18 3E-22 128.5 8.4 82 9-96 10-91 (102)
153 2do0_A HnRNP M, heterogeneous 99.7 3.1E-17 1.1E-21 128.1 11.7 82 100-184 13-94 (114)
154 2fy1_A RNA-binding motif prote 99.7 1.6E-17 5.4E-22 130.2 10.0 80 102-184 7-86 (116)
155 2cq3_A RNA-binding protein 9; 99.7 3.4E-17 1.2E-21 125.4 11.7 82 99-184 12-93 (103)
156 2hgl_A HNRPF protein, heteroge 99.7 5E-18 1.7E-22 136.4 7.1 83 9-96 39-124 (136)
157 2a3j_A U1 small nuclear ribonu 99.7 2E-17 6.7E-22 131.4 10.4 85 9-99 24-112 (127)
158 2dgs_A DAZ-associated protein 99.7 3.2E-17 1.1E-21 124.6 11.2 80 101-184 9-89 (99)
159 1x5u_A Splicing factor 3B subu 99.7 1.9E-17 6.5E-22 127.3 9.9 83 100-185 13-96 (105)
160 3ns6_A Eukaryotic translation 99.7 6.3E-18 2.2E-22 128.9 7.1 81 102-184 6-93 (100)
161 3ulh_A THO complex subunit 4; 99.7 3.3E-17 1.1E-21 126.4 11.3 80 100-182 27-106 (107)
162 2jrs_A RNA-binding protein 39; 99.7 3.8E-17 1.3E-21 126.3 11.6 84 98-184 22-106 (108)
163 2hgl_A HNRPF protein, heteroge 99.7 1.3E-17 4.3E-22 134.1 9.0 81 100-184 42-125 (136)
164 3pgw_S U1-70K; protein-RNA com 99.7 2.2E-18 7.4E-23 165.1 5.3 80 102-184 102-182 (437)
165 2e5h_A Zinc finger CCHC-type a 99.7 2.5E-17 8.5E-22 124.0 10.1 79 101-182 15-94 (94)
166 1p27_B RNA-binding protein 8A; 99.7 3E-17 1E-21 126.4 10.8 81 101-184 22-103 (106)
167 1why_A Hypothetical protein ri 99.7 4E-17 1.4E-21 123.7 11.2 85 8-99 11-95 (97)
168 2nlw_A Eukaryotic translation 99.7 1.1E-17 3.8E-22 128.7 8.2 84 8-96 9-99 (105)
169 2la6_A RNA-binding protein FUS 99.7 3.7E-17 1.3E-21 124.3 10.8 79 101-182 12-99 (99)
170 2dhg_A TRNA selenocysteine ass 99.7 1.8E-17 6E-22 127.3 9.0 82 101-184 8-90 (104)
171 2db1_A Heterogeneous nuclear r 99.7 6.6E-18 2.2E-22 132.8 6.7 83 9-96 12-97 (118)
172 2cph_A RNA binding motif prote 99.7 3E-17 1E-21 126.7 10.3 83 99-184 12-97 (107)
173 2krb_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 122.2 7.6 73 14-91 1-80 (81)
174 2lmi_A GRSF-1, G-rich sequence 99.7 6.7E-18 2.3E-22 130.4 6.6 85 8-97 5-92 (107)
175 1x5o_A RNA binding motif, sing 99.7 5E-17 1.7E-21 126.9 11.6 84 100-184 23-112 (114)
176 2dnq_A RNA-binding protein 4B; 99.7 5.4E-17 1.8E-21 121.2 11.2 80 9-99 3-82 (90)
177 1iqt_A AUF1, heterogeneous nuc 99.7 6.5E-18 2.2E-22 121.6 5.9 75 16-94 1-75 (75)
178 2cqi_A Nucleolysin TIAR; RNA r 99.7 4E-17 1.4E-21 125.1 10.6 82 100-185 13-94 (103)
179 2div_A TRNA selenocysteine ass 99.7 3E-17 1E-21 124.8 9.7 83 101-184 8-94 (99)
180 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.9E-17 9.9E-22 137.0 10.4 87 10-99 68-154 (165)
181 2dnm_A SRP46 splicing factor; 99.7 1.7E-17 6E-22 127.1 8.3 81 101-184 12-93 (103)
182 2wbr_A GW182, gawky, LD47780P; 99.7 2.8E-17 9.4E-22 119.8 8.9 73 102-182 7-79 (89)
183 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.1E-17 7.2E-22 126.4 8.7 82 101-185 11-93 (102)
184 1x4d_A Matrin 3; structural ge 99.7 1.3E-17 4.4E-22 127.0 7.4 77 101-184 14-92 (102)
185 2cpj_A Non-POU domain-containi 99.7 3.7E-17 1.3E-21 124.3 9.9 84 6-98 7-90 (99)
186 1x5t_A Splicing factor 3B subu 99.7 2.2E-17 7.5E-22 124.8 8.5 80 102-184 5-86 (96)
187 1oo0_B CG8781-PA, drosophila Y 99.7 2E-17 6.8E-22 128.3 8.4 82 100-184 24-106 (110)
188 2cpx_A Hypothetical protein FL 99.7 7E-18 2.4E-22 132.0 5.8 88 10-100 21-108 (115)
189 2fc9_A NCL protein; structure 99.7 2.1E-17 7.1E-22 126.2 8.3 85 8-99 9-93 (101)
190 2la4_A Nuclear and cytoplasmic 99.7 3.4E-17 1.2E-21 125.0 9.4 79 9-96 22-100 (101)
191 1x5s_A Cold-inducible RNA-bind 99.7 2.3E-17 7.8E-22 126.2 8.3 81 101-184 11-92 (102)
192 2cpy_A RNA-binding protein 12; 99.7 2.5E-17 8.7E-22 128.7 8.6 85 100-188 13-98 (114)
193 2khc_A Testis-specific RNP-typ 99.7 3E-17 1E-21 129.0 9.0 80 100-182 38-118 (118)
194 2e5j_A Methenyltetrahydrofolat 99.7 6.1E-17 2.1E-21 122.7 10.4 82 9-98 14-95 (97)
195 2cpf_A RNA binding motif prote 99.7 4.1E-17 1.4E-21 123.8 9.4 80 102-184 5-88 (98)
196 2dgx_A KIAA0430 protein; RRM d 99.7 3.9E-17 1.3E-21 123.5 9.2 78 102-184 9-90 (96)
197 1x4h_A RNA-binding protein 28; 99.7 5.8E-17 2E-21 125.9 10.5 82 100-184 13-101 (111)
198 2dgv_A HnRNP M, heterogeneous 99.7 4.9E-17 1.7E-21 121.9 9.6 80 101-184 7-86 (92)
199 2ad9_A Polypyrimidine tract-bi 99.7 2.6E-17 8.9E-22 128.6 8.2 79 100-185 29-108 (119)
200 2lcw_A RNA-binding protein FUS 99.5 9.6E-19 3.3E-23 137.2 0.0 88 9-99 2-97 (116)
201 3ucg_A Polyadenylate-binding p 99.7 6.3E-17 2.2E-21 120.4 10.0 79 102-184 6-85 (89)
202 2err_A Ataxin-2-binding protei 99.7 3.4E-17 1.2E-21 126.9 8.7 82 99-184 26-107 (109)
203 2kxn_B Transformer-2 protein h 99.7 3E-17 1E-21 131.1 8.7 82 100-184 44-126 (129)
204 2cqd_A RNA-binding region cont 99.7 5.9E-17 2E-21 126.9 10.1 83 98-184 13-96 (116)
205 2ytc_A PRE-mRNA-splicing facto 99.7 6E-17 2E-21 119.5 9.4 81 6-95 4-85 (85)
206 3s7r_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 118.7 10.7 79 99-181 8-87 (87)
207 2cq1_A PTB-like protein L; RRM 99.7 8.1E-17 2.8E-21 122.6 10.1 77 101-184 14-91 (101)
208 2cpi_A CCR4-NOT transcription 99.7 4.4E-17 1.5E-21 126.7 8.8 80 102-184 15-101 (111)
209 2cq4_A RNA binding motif prote 99.7 3.6E-17 1.2E-21 127.7 8.2 83 100-186 23-106 (114)
210 2kt5_A RNA and export factor-b 99.7 7.8E-17 2.7E-21 127.8 10.2 82 100-184 33-114 (124)
211 2hgm_A HNRPF protein, heteroge 99.7 2.7E-17 9.4E-22 130.1 7.5 83 9-97 37-121 (126)
212 2cq2_A Hypothetical protein LO 99.7 1.7E-17 5.7E-22 128.4 6.1 83 8-96 19-105 (114)
213 2cpe_A RNA-binding protein EWS 99.7 6.1E-17 2.1E-21 126.2 9.4 83 99-184 12-103 (113)
214 2dnn_A RNA-binding protein 12; 99.7 1.9E-17 6.4E-22 128.0 6.3 80 11-96 13-92 (109)
215 1wex_A Hypothetical protein (r 99.7 7.1E-17 2.4E-21 123.7 9.4 78 100-184 13-91 (104)
216 2dgw_A Probable RNA-binding pr 99.7 1.3E-16 4.4E-21 119.3 10.7 79 101-184 9-87 (91)
217 1u6f_A Tcubp1, RNA-binding pro 99.7 6.5E-17 2.2E-21 130.9 9.7 81 101-184 41-122 (139)
218 2dng_A Eukaryotic translation 99.7 1.4E-16 4.7E-21 122.1 10.9 79 101-184 14-93 (103)
219 1x4c_A Splicing factor, argini 99.7 7.6E-17 2.6E-21 124.7 9.5 83 9-99 10-95 (108)
220 4a8x_A RNA-binding protein wit 99.7 2.6E-17 9E-22 122.2 6.6 80 102-184 4-85 (88)
221 2jvo_A Nucleolar protein 3; nu 99.7 7.6E-17 2.6E-21 124.6 9.5 82 7-99 24-105 (108)
222 1x4g_A Nucleolysin TIAR; struc 99.7 9.1E-17 3.1E-21 124.4 9.9 82 9-99 20-101 (109)
223 2db1_A Heterogeneous nuclear r 99.7 7E-17 2.4E-21 126.9 9.3 80 101-184 16-98 (118)
224 3nmr_A Cugbp ELAV-like family 99.7 1.2E-16 4.2E-21 133.8 11.4 87 8-95 89-175 (175)
225 2mss_A Protein (musashi1); RNA 99.7 4.1E-17 1.4E-21 117.4 7.1 74 104-181 1-75 (75)
226 2f3j_A RNA and export factor b 99.7 9.7E-17 3.3E-21 135.2 10.4 86 10-99 84-169 (177)
227 2ek1_A RNA-binding protein 12; 99.7 5.4E-17 1.8E-21 122.4 7.7 79 102-183 15-94 (95)
228 2dha_A FLJ20171 protein; RRM d 99.7 2.9E-17 9.9E-22 129.6 6.4 80 11-95 20-103 (123)
229 2cqp_A RNA-binding protein 12; 99.7 5.4E-17 1.8E-21 123.1 7.6 79 102-183 15-94 (98)
230 1nu4_A U1A RNA binding domain; 99.7 3.6E-17 1.2E-21 123.8 6.5 84 10-99 4-91 (97)
231 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.3E-16 7.9E-21 130.2 11.8 81 101-184 38-119 (156)
232 2dnl_A Cytoplasmic polyadenyla 99.7 2.2E-17 7.4E-22 129.0 5.2 68 9-77 3-73 (114)
233 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.7E-17 1.6E-21 124.0 6.9 79 101-184 18-98 (100)
234 1wi8_A EIF-4B, eukaryotic tran 99.7 1.5E-16 5E-21 122.1 9.8 79 101-184 14-94 (104)
235 2xs2_A Deleted in azoospermia- 99.7 2.2E-17 7.5E-22 126.3 5.1 82 10-97 5-86 (102)
236 3ex7_B RNA-binding protein 8A; 99.7 1.1E-16 3.6E-21 127.3 9.3 82 100-184 20-102 (126)
237 2rs2_A Musashi-1, RNA-binding 99.7 1.5E-16 5.1E-21 123.2 9.8 82 99-184 22-104 (109)
238 1fjc_A Nucleolin RBD2, protein 99.7 2.8E-17 9.6E-22 124.2 5.6 86 6-99 8-93 (96)
239 1x4a_A Splicing factor, argini 99.7 1.5E-16 5.3E-21 123.1 9.9 80 100-184 20-99 (109)
240 2dnp_A RNA-binding protein 14; 99.7 1.6E-16 5.4E-21 118.6 9.5 81 8-99 3-83 (90)
241 2hgn_A Heterogeneous nuclear r 99.7 1.6E-17 5.5E-22 133.9 4.3 119 57-184 2-123 (139)
242 2jvr_A Nucleolar protein 3; RN 99.7 4.8E-17 1.7E-21 125.9 6.8 81 10-97 24-105 (111)
243 1why_A Hypothetical protein ri 99.7 1.5E-16 5.2E-21 120.4 9.4 78 101-184 16-93 (97)
244 2hgn_A Heterogeneous nuclear r 99.7 2.5E-17 8.6E-22 132.7 5.3 82 10-97 42-123 (139)
245 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.6E-17 1.9E-21 117.2 6.5 75 103-181 1-76 (77)
246 2m2b_A RNA-binding protein 10; 99.7 3E-17 1E-21 131.6 5.5 82 99-184 20-108 (131)
247 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-16 3.9E-21 122.3 8.5 78 101-183 14-91 (102)
248 1x4e_A RNA binding motif, sing 99.7 4.3E-17 1.5E-21 120.3 5.9 78 102-182 5-83 (85)
249 2ki2_A SS-DNA binding protein 99.7 2.8E-17 9.6E-22 122.7 4.9 80 103-186 2-82 (90)
250 2dgt_A RNA-binding protein 30; 99.7 1.5E-16 5.2E-21 119.2 9.0 82 7-99 3-84 (92)
251 2i2y_A Fusion protein consists 99.7 2.1E-16 7.2E-21 129.6 10.6 83 8-98 67-149 (150)
252 1wel_A RNA-binding protein 12; 99.7 1.4E-16 4.8E-21 126.3 9.1 84 101-188 24-108 (124)
253 1whx_A Hypothetical protein ri 99.7 1E-16 3.6E-21 124.5 8.2 79 10-97 6-84 (111)
254 2dnn_A RNA-binding protein 12; 99.7 2.5E-16 8.6E-21 121.6 10.3 77 102-183 16-92 (109)
255 1wg5_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 122.4 8.6 79 101-183 14-93 (104)
256 2cqh_A IGF-II mRNA-binding pro 99.7 8E-17 2.7E-21 121.0 7.2 83 9-100 3-86 (93)
257 2j8a_A Histone-lysine N-methyl 99.7 5.5E-17 1.9E-21 126.2 6.3 78 15-95 3-94 (136)
258 2a3j_A U1 small nuclear ribonu 99.7 1.6E-16 5.3E-21 126.2 9.1 83 101-188 28-114 (127)
259 2jvr_A Nucleolar protein 3; RN 99.7 1.1E-16 3.9E-21 123.8 8.1 91 87-185 15-106 (111)
260 2cpj_A Non-POU domain-containi 99.7 2E-16 6.7E-21 120.3 9.2 77 100-184 13-89 (99)
261 2dh8_A DAZ-associated protein 99.7 9.6E-17 3.3E-21 123.4 7.5 81 100-184 14-95 (105)
262 2ytc_A PRE-mRNA-splicing facto 99.7 2.4E-16 8.2E-21 116.2 9.4 75 100-182 10-85 (85)
263 2nlw_A Eukaryotic translation 99.7 1.3E-16 4.4E-21 122.7 8.2 80 101-184 14-100 (105)
264 1sjr_A Polypyrimidine tract-bi 99.7 2.7E-16 9.3E-21 129.0 10.6 83 11-98 43-125 (164)
265 2fc9_A NCL protein; structure 99.7 2.3E-16 7.8E-21 120.4 9.5 79 100-184 13-91 (101)
266 1wf1_A RNA-binding protein RAL 99.7 2.3E-16 7.9E-21 122.3 9.6 78 10-98 23-101 (110)
267 2kvi_A Nuclear polyadenylated 99.7 2.1E-16 7.1E-21 119.5 9.1 79 9-98 5-84 (96)
268 2dis_A Unnamed protein product 99.7 1.3E-16 4.5E-21 123.4 8.1 83 101-185 7-93 (109)
269 1x4c_A Splicing factor, argini 99.7 2.5E-16 8.7E-21 121.7 9.7 78 100-184 13-93 (108)
270 1x4b_A Heterogeneous nuclear r 99.7 2E-16 6.9E-21 123.8 9.2 81 100-184 25-106 (116)
271 2dgu_A Heterogeneous nuclear r 99.7 2E-16 6.9E-21 121.2 8.9 80 9-99 6-85 (103)
272 1sjr_A Polypyrimidine tract-bi 99.7 2.4E-16 8.2E-21 129.4 9.8 79 102-184 46-124 (164)
273 2cqg_A TDP-43, TAR DNA-binding 99.7 5.5E-16 1.9E-20 118.7 11.3 80 100-184 13-93 (103)
274 1x4f_A Matrin 3; structural ge 99.7 7.3E-17 2.5E-21 124.6 6.3 78 100-184 23-102 (112)
275 2xnq_A Nuclear polyadenylated 99.7 3.4E-16 1.2E-20 118.5 9.9 79 8-97 16-95 (97)
276 2jwn_A Embryonic polyadenylate 99.7 2.9E-16 9.7E-21 124.5 9.7 80 101-184 35-115 (124)
277 2cpd_A Apobec-1 stimulating pr 99.7 4.4E-16 1.5E-20 118.3 10.4 83 6-99 7-91 (99)
278 1fxl_A Paraneoplastic encephal 99.7 5.6E-16 1.9E-20 128.6 12.0 84 10-94 84-167 (167)
279 1whx_A Hypothetical protein ri 99.7 2.1E-16 7.2E-21 122.8 8.6 76 100-183 8-83 (111)
280 3d2w_A TAR DNA-binding protein 99.7 1.5E-16 5.1E-21 118.5 7.3 81 9-99 6-86 (89)
281 2e5g_A U6 snRNA-specific termi 99.7 3.7E-16 1.2E-20 117.6 9.6 81 9-98 3-83 (94)
282 2lmi_A GRSF-1, G-rich sequence 99.7 1.1E-16 3.7E-21 123.6 6.8 81 101-185 10-93 (107)
283 2e44_A Insulin-like growth fac 99.7 3.4E-16 1.2E-20 118.2 9.4 82 9-97 10-92 (96)
284 2la4_A Nuclear and cytoplasmic 99.7 1.6E-16 5.6E-21 121.2 7.6 74 102-183 27-100 (101)
285 3md3_A Nuclear and cytoplasmic 99.7 4.9E-16 1.7E-20 128.9 11.1 84 9-95 82-165 (166)
286 1b7f_A Protein (SXL-lethal pro 99.7 7.9E-16 2.7E-20 128.0 12.4 85 9-94 84-168 (168)
287 2dgt_A RNA-binding protein 30; 99.7 5.2E-16 1.8E-20 116.3 10.1 75 100-184 8-82 (92)
288 2jvo_A Nucleolar protein 3; nu 99.7 3.2E-16 1.1E-20 121.1 9.0 79 99-187 28-106 (108)
289 2dnq_A RNA-binding protein 4B; 99.7 5E-16 1.7E-20 115.9 9.8 74 101-184 7-80 (90)
290 2cq2_A Hypothetical protein LO 99.7 2.3E-16 7.9E-21 122.0 8.1 78 101-183 24-105 (114)
291 2dha_A FLJ20171 protein; RRM d 99.7 1.6E-16 5.5E-21 125.3 7.2 79 102-184 23-105 (123)
292 2krb_A Eukaryotic translation 99.6 2.1E-16 7.2E-21 115.5 7.3 69 102-172 1-75 (81)
293 2e5i_A Heterogeneous nuclear r 99.6 7.4E-16 2.5E-20 121.3 10.9 76 103-184 26-102 (124)
294 3zzy_A Polypyrimidine tract-bi 99.6 6.8E-16 2.3E-20 122.1 10.7 77 103-184 29-106 (130)
295 3d2w_A TAR DNA-binding protein 99.6 4.1E-16 1.4E-20 116.1 8.8 77 101-186 10-86 (89)
296 1fjc_A Nucleolin RBD2, protein 99.6 2E-16 6.9E-21 119.4 7.2 82 96-184 10-91 (96)
297 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.8E-16 1.6E-20 125.8 9.9 79 100-181 61-140 (140)
298 1x4g_A Nucleolysin TIAR; struc 99.6 4E-16 1.4E-20 120.8 9.0 77 100-184 23-99 (109)
299 2hvz_A Splicing factor, argini 99.6 2.2E-16 7.5E-21 120.4 7.2 75 103-184 1-75 (101)
300 1x5p_A Negative elongation fac 99.6 6.5E-16 2.2E-20 116.9 9.7 83 6-99 7-89 (97)
301 2e5i_A Heterogeneous nuclear r 99.6 1.6E-15 5.6E-20 119.3 12.0 76 16-98 27-103 (124)
302 2dnp_A RNA-binding protein 14; 99.6 6E-16 2E-20 115.4 9.0 75 100-184 7-81 (90)
303 1nu4_A U1A RNA binding domain; 99.6 1.7E-16 5.7E-21 120.2 5.9 83 101-188 7-93 (97)
304 2xnq_A Nuclear polyadenylated 99.6 8.5E-16 2.9E-20 116.3 9.7 74 101-184 21-95 (97)
305 2qfj_A FBP-interacting repress 99.6 1.1E-15 3.8E-20 132.5 11.6 85 11-98 122-206 (216)
306 3beg_B Splicing factor, argini 99.6 4.1E-16 1.4E-20 121.9 7.8 66 11-84 13-78 (115)
307 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-15 4.5E-20 115.7 10.3 75 100-184 13-89 (99)
308 3egn_A RNA-binding protein 40; 99.6 8.9E-17 3E-21 130.8 4.0 88 9-99 40-132 (143)
309 2kvi_A Nuclear polyadenylated 99.6 3.9E-16 1.3E-20 118.0 7.1 75 100-184 8-83 (96)
310 2e5j_A Methenyltetrahydrofolat 99.6 5.1E-16 1.7E-20 117.5 7.8 78 100-184 17-94 (97)
311 3lqv_A PRE-mRNA branch site pr 99.6 1.3E-15 4.5E-20 119.0 10.1 79 102-185 8-86 (115)
312 2g4b_A Splicing factor U2AF 65 99.6 9.6E-16 3.3E-20 128.1 10.0 82 10-94 90-171 (172)
313 2dgu_A Heterogeneous nuclear r 99.6 7.7E-16 2.6E-20 117.9 8.6 75 101-185 10-84 (103)
314 1wg1_A KIAA1579 protein, homol 99.6 4.3E-16 1.5E-20 115.7 6.9 77 12-98 3-79 (88)
315 2f3j_A RNA and export factor b 99.6 7.4E-16 2.5E-20 129.7 9.2 81 101-184 87-167 (177)
316 2cpx_A Hypothetical protein FL 99.6 8.8E-16 3E-20 119.9 9.1 80 100-185 23-106 (115)
317 2xs2_A Deleted in azoospermia- 99.6 2.3E-16 7.9E-21 120.6 5.6 79 101-184 8-86 (102)
318 3zzy_A Polypyrimidine tract-bi 99.6 8E-16 2.8E-20 121.6 8.8 81 12-98 26-107 (130)
319 1wf1_A RNA-binding protein RAL 99.6 8.5E-16 2.9E-20 119.1 8.6 73 102-184 27-100 (110)
320 2yh0_A Splicing factor U2AF 65 99.6 1.4E-15 4.8E-20 130.1 10.3 86 11-99 111-196 (198)
321 1iqt_A AUF1, heterogeneous nuc 99.6 2.2E-16 7.7E-21 113.5 4.4 74 104-181 1-75 (75)
322 2fc8_A NCL protein; structure 99.6 2.3E-15 7.8E-20 114.9 10.3 79 100-184 13-92 (102)
323 3pgw_S U1-70K; protein-RNA com 99.6 1.1E-15 3.9E-20 146.3 10.4 84 11-97 99-182 (437)
324 2diu_A KIAA0430 protein; struc 99.6 3.2E-15 1.1E-19 109.9 10.3 77 11-100 5-87 (96)
325 1wg1_A KIAA1579 protein, homol 99.6 1.7E-15 5.7E-20 112.5 8.4 74 102-184 5-78 (88)
326 2lcw_A RNA-binding protein FUS 99.4 4.9E-17 1.7E-21 127.4 0.0 84 100-186 5-97 (116)
327 2hgm_A HNRPF protein, heteroge 99.6 6.7E-16 2.3E-20 122.1 6.4 78 101-183 41-120 (126)
328 1l3k_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 129.1 9.7 85 11-99 101-185 (196)
329 4f02_A Polyadenylate-binding p 99.6 4.5E-15 1.5E-19 128.9 12.1 83 101-186 14-97 (213)
330 3egn_A RNA-binding protein 40; 99.6 6.6E-16 2.2E-20 125.6 6.1 85 100-187 43-133 (143)
331 2cjk_A Nuclear polyadenylated 99.6 9.6E-16 3.3E-20 127.4 7.0 82 12-97 85-166 (167)
332 1x5p_A Negative elongation fac 99.6 4.8E-15 1.7E-19 112.1 10.3 75 100-184 13-87 (97)
333 2cqh_A IGF-II mRNA-binding pro 99.6 1.4E-15 4.8E-20 114.1 7.2 75 101-184 7-83 (93)
334 3beg_B Splicing factor, argini 99.6 2.8E-15 9.5E-20 117.2 9.0 76 101-183 15-93 (115)
335 1fj7_A Nucleolin RBD1, protein 99.6 1.9E-16 6.5E-21 120.8 2.0 79 101-184 16-95 (101)
336 1wf0_A TDP-43, TAR DNA-binding 99.6 4.8E-16 1.6E-20 115.5 4.1 79 11-99 2-80 (88)
337 2pe8_A Splicing factor 45; RRM 99.6 5.1E-15 1.7E-19 113.5 9.9 83 11-96 5-93 (105)
338 2j8a_A Histone-lysine N-methyl 99.6 3.9E-15 1.3E-19 115.8 9.1 81 103-186 3-98 (136)
339 2bz2_A Negative elongation fac 99.6 4.2E-15 1.4E-19 117.1 9.4 79 9-98 34-112 (121)
340 2hzc_A Splicing factor U2AF 65 99.6 2.8E-15 9.7E-20 110.8 7.7 73 11-93 3-86 (87)
341 2voo_A Lupus LA protein; RNA-b 99.6 1.6E-14 5.4E-19 123.3 12.8 80 101-184 108-187 (193)
342 2e44_A Insulin-like growth fac 99.6 4.5E-15 1.6E-19 111.9 8.4 77 102-184 15-92 (96)
343 2e5g_A U6 snRNA-specific termi 99.6 6.6E-15 2.3E-19 110.7 8.6 75 102-184 8-82 (94)
344 3u1l_A PRE-mRNA-splicing facto 99.6 5E-15 1.7E-19 129.5 8.1 83 100-187 132-232 (240)
345 3u1l_A PRE-mRNA-splicing facto 99.5 1E-14 3.5E-19 127.6 9.2 83 10-98 130-230 (240)
346 2voo_A Lupus LA protein; RNA-b 99.5 1.2E-14 4.1E-19 124.1 9.2 79 13-96 108-186 (193)
347 2pe8_A Splicing factor 45; RRM 99.5 3.5E-14 1.2E-18 108.8 10.6 81 101-184 7-94 (105)
348 2dnl_A Cytoplasmic polyadenyla 99.5 9E-15 3.1E-19 114.1 7.4 75 101-181 7-85 (114)
349 3tyt_A Heterogeneous nuclear r 99.5 1.7E-14 5.8E-19 124.4 9.8 76 102-184 4-80 (205)
350 2diu_A KIAA0430 protein; struc 99.5 1.7E-14 5.7E-19 106.1 8.2 69 104-184 11-84 (96)
351 3pgw_A U1-A; protein-RNA compl 99.5 3.3E-13 1.1E-17 122.0 18.3 81 100-185 7-91 (282)
352 2bz2_A Negative elongation fac 99.5 1.9E-14 6.4E-19 113.4 8.8 76 100-185 37-112 (121)
353 2hzc_A Splicing factor U2AF 65 99.5 2.4E-14 8.4E-19 105.7 8.4 71 101-180 5-86 (87)
354 1wf0_A TDP-43, TAR DNA-binding 99.5 1.3E-14 4.3E-19 107.7 6.4 74 102-184 5-78 (88)
355 3sde_A Paraspeckle component 1 99.5 4.3E-14 1.5E-18 126.5 11.2 87 12-99 94-181 (261)
356 1fje_B Nucleolin RBD12, protei 99.5 2.2E-14 7.5E-19 120.2 7.7 81 9-97 94-174 (175)
357 2dit_A HIV TAT specific factor 99.5 1.8E-13 6.2E-18 106.3 9.5 86 6-98 7-103 (112)
358 3tht_A Alkylated DNA repair pr 99.5 1.2E-13 4E-18 127.2 9.3 83 7-95 11-97 (345)
359 1jmt_A Splicing factor U2AF 35 99.4 4.4E-14 1.5E-18 108.1 4.3 72 107-181 20-103 (104)
360 1qm9_A Polypyrimidine tract-bi 99.4 3.7E-13 1.3E-17 115.1 10.4 79 12-97 118-197 (198)
361 3v4m_A Splicing factor U2AF 65 99.4 1.9E-13 6.4E-18 104.7 7.4 83 12-97 3-97 (105)
362 2adc_A Polypyrimidine tract-bi 99.4 2.5E-13 8.5E-18 119.2 8.7 77 101-184 33-110 (229)
363 2dit_A HIV TAT specific factor 99.4 6.8E-13 2.3E-17 103.0 10.1 79 100-184 13-102 (112)
364 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.3E-12 4.3E-17 98.9 10.8 79 11-99 7-92 (100)
365 3v4m_A Splicing factor U2AF 65 99.4 4.3E-13 1.5E-17 102.7 8.0 81 102-185 5-98 (105)
366 3tht_A Alkylated DNA repair pr 99.4 3.7E-13 1.3E-17 123.9 9.0 78 100-182 16-97 (345)
367 1jmt_A Splicing factor U2AF 35 99.4 8.3E-14 2.8E-18 106.6 3.9 72 19-94 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 99.4 3.8E-13 1.3E-17 105.0 7.6 81 13-96 19-108 (118)
369 3ue2_A Poly(U)-binding-splicin 99.4 1.8E-12 6.3E-17 101.2 8.6 81 101-184 19-109 (118)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.1E-12 1.7E-16 95.6 9.3 81 86-184 10-90 (100)
371 3s6e_A RNA-binding protein 39; 99.2 2.1E-11 7.3E-16 94.4 6.7 77 102-184 7-93 (114)
372 3s6e_A RNA-binding protein 39; 99.2 9.3E-11 3.2E-15 90.8 8.1 77 12-95 5-91 (114)
373 1owx_A Lupus LA protein, SS-B, 99.1 2.2E-10 7.7E-15 88.9 10.2 80 102-188 18-100 (121)
374 1owx_A Lupus LA protein, SS-B, 99.1 1.3E-10 4.3E-15 90.3 8.5 81 9-97 13-96 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.0 1.8E-09 6.1E-14 78.6 7.8 70 103-183 8-85 (91)
376 3dxb_A Thioredoxin N-terminall 98.9 1.8E-08 6.3E-13 87.5 12.1 68 114-184 141-213 (222)
377 2dnr_A Synaptojanin-1; RRM dom 98.9 4.4E-09 1.5E-13 76.6 6.4 74 12-97 5-86 (91)
378 3dxb_A Thioredoxin N-terminall 98.8 9.3E-09 3.2E-13 89.4 8.1 69 25-96 140-212 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.7 2.6E-08 8.8E-13 72.8 6.3 69 102-181 15-92 (95)
380 1ufw_A Synaptojanin 2; RNP dom 98.6 3.7E-08 1.3E-12 72.0 5.6 72 11-94 12-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.2 4.7E-06 1.6E-10 62.1 8.0 70 102-179 21-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.1 9.9E-06 3.4E-10 60.4 8.2 75 8-91 15-94 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.1 2.3E-05 7.7E-10 58.0 9.3 91 10-115 4-99 (104)
384 1uw4_A UPF3X; nonsense mediate 97.8 0.00029 9.9E-09 51.4 10.5 79 103-181 2-85 (91)
385 1uw4_A UPF3X; nonsense mediate 97.7 0.00015 5.1E-09 52.9 7.9 72 15-86 2-75 (91)
386 1whv_A Poly(A)-specific ribonu 97.5 0.00032 1.1E-08 51.2 7.6 58 11-77 13-70 (100)
387 2dhx_A Poly (ADP-ribose) polym 97.4 0.0016 5.5E-08 48.1 9.5 67 102-179 8-79 (104)
388 1wwh_A Nucleoporin 35, nucleop 97.3 0.0013 4.5E-08 50.2 8.7 76 102-186 24-99 (119)
389 1wey_A Calcipressin 1; structu 97.2 0.00066 2.3E-08 50.4 6.4 73 102-182 5-82 (104)
390 2l08_A Regulator of nonsense t 97.1 0.0011 3.9E-08 48.6 6.7 80 102-181 9-93 (97)
391 3ctr_A Poly(A)-specific ribonu 97.1 0.00069 2.3E-08 49.6 4.9 53 16-77 8-60 (101)
392 1whv_A Poly(A)-specific ribonu 97.0 0.0021 7.1E-08 46.9 6.9 55 102-164 16-70 (100)
393 1wwh_A Nucleoporin 35, nucleop 96.9 0.0019 6.6E-08 49.2 6.4 66 9-83 19-84 (119)
394 2l08_A Regulator of nonsense t 96.8 0.0013 4.3E-08 48.3 4.2 75 12-86 7-83 (97)
395 3ctr_A Poly(A)-specific ribonu 96.7 0.0025 8.5E-08 46.7 5.5 54 103-164 7-60 (101)
396 1wey_A Calcipressin 1; structu 96.7 0.0032 1.1E-07 46.7 5.8 74 13-95 4-82 (104)
397 3pq1_A Poly(A) RNA polymerase; 96.6 0.0003 1E-08 66.8 -0.0 61 9-75 48-108 (464)
398 3pq1_A Poly(A) RNA polymerase; 95.7 0.0047 1.6E-07 58.7 2.8 58 99-161 50-107 (464)
399 3p3d_A Nucleoporin 53; structu 95.4 0.042 1.4E-06 42.4 6.7 77 103-184 8-99 (132)
400 3p3d_A Nucleoporin 53; structu 94.1 0.038 1.3E-06 42.7 3.5 69 13-84 6-88 (132)
401 3d45_A Poly(A)-specific ribonu 92.1 0.44 1.5E-05 45.9 8.5 55 14-77 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 83.8 3.3 0.00011 39.8 8.3 56 102-165 440-495 (507)
403 3j21_T 50S ribosomal protein L 56.2 26 0.0009 24.6 5.5 57 16-75 24-82 (86)
404 1vq8_S 50S ribosomal protein L 54.3 13 0.00044 26.2 3.6 53 17-72 24-78 (85)
405 3fry_A Probable copper-exporti 52.3 37 0.0013 22.1 5.8 54 103-162 7-60 (73)
406 2f06_A Conserved hypothetical 49.9 82 0.0028 23.9 9.6 113 27-167 19-134 (144)
407 4eyt_A Telomerase associated p 49.4 66 0.0022 22.6 8.1 57 12-76 10-66 (129)
408 4eyt_A Telomerase associated p 47.4 71 0.0024 22.5 8.6 55 102-163 12-66 (129)
409 2zkr_s 60S ribosomal protein L 46.4 29 0.00098 27.4 4.8 56 17-75 95-152 (156)
410 2lfv_A Protein DAMX; cell divi 51.9 4.3 0.00015 30.0 0.0 52 114-167 34-88 (106)
411 1xn9_A 30S ribosomal protein S 45.4 71 0.0024 23.1 6.5 48 24-72 28-80 (101)
412 3j21_T 50S ribosomal protein L 44.1 64 0.0022 22.6 5.9 56 104-161 24-81 (86)
413 4e8u_A Putative uncharacterize 43.0 70 0.0024 25.6 6.7 51 16-69 14-75 (172)
414 1ywx_A 30S ribosomal protein S 42.8 77 0.0026 23.0 6.3 48 24-72 28-80 (102)
415 3r8s_T 50S ribosomal protein L 42.6 54 0.0018 23.4 5.4 34 16-49 28-63 (93)
416 2g1d_A 30S ribosomal protein S 41.8 13 0.00043 27.0 1.9 47 24-71 29-80 (98)
417 2zjr_Q 50S ribosomal protein L 41.3 36 0.0012 24.4 4.3 33 18-50 25-59 (95)
418 3u5e_X 60S ribosomal protein L 38.6 59 0.002 25.2 5.4 57 17-76 81-139 (142)
419 4a17_R RPL23A, 60S ribosomal p 36.4 64 0.0022 25.2 5.3 57 17-76 89-147 (150)
420 2xzm_P RPS24E; ribosome, trans 34.1 30 0.001 27.1 3.1 48 24-72 31-83 (149)
421 3ts2_A Protein LIN-28 homolog 33.1 6.7 0.00023 30.9 -0.7 28 117-151 2-29 (148)
422 3lpe_A Putative transcription 32.5 91 0.0031 21.9 5.3 45 27-76 21-70 (92)
423 4a4j_A Pacszia, cation-transpo 29.3 79 0.0027 19.9 4.4 55 103-162 4-61 (69)
424 3dxs_X Copper-transporting ATP 29.1 1.1E+02 0.0039 19.4 6.2 55 103-162 4-62 (74)
425 3u5c_Y RP50, 40S ribosomal pro 29.1 1.7E+02 0.006 22.3 6.6 48 24-72 33-85 (135)
426 3iz5_X 60S ribosomal protein L 28.8 58 0.002 25.5 3.9 55 17-74 91-147 (152)
427 3bb5_A Stress responsive alpha 26.6 1.9E+02 0.0066 21.3 7.7 59 14-72 21-90 (121)
428 4bby_A Alkyldihydroxyacetoneph 25.8 57 0.0019 32.2 4.3 56 21-77 350-409 (658)
429 2ki0_A DS119; beta-alpha-beta, 25.3 37 0.0013 18.6 1.6 20 13-37 4-23 (36)
430 2e5p_A Protein PHF1, PHD finge 25.0 25 0.00086 23.3 1.0 11 143-153 37-47 (68)
431 1q4r_A Protein AT3G17210; cent 25.0 1.9E+02 0.0067 20.7 6.9 60 14-73 11-81 (112)
432 2g0c_A ATP-dependent RNA helic 24.9 67 0.0023 21.4 3.4 59 112-181 11-74 (76)
433 4a17_R RPL23A, 60S ribosomal p 24.8 1.2E+02 0.0041 23.6 5.1 56 104-161 88-145 (150)
434 3u5e_X 60S ribosomal protein L 24.4 1.2E+02 0.0041 23.4 5.0 56 104-161 80-137 (142)
435 2cu1_A Mitogen-activated prote 24.1 1.3E+02 0.0043 21.7 4.6 63 109-180 23-86 (103)
436 4bby_A Alkyldihydroxyacetoneph 23.8 69 0.0024 31.6 4.5 53 111-163 352-408 (658)
437 2eqj_A Metal-response element- 23.7 38 0.0013 22.4 1.7 11 55-65 40-50 (66)
438 3bgu_A Ferredoxin-like protein 23.2 2.2E+02 0.0075 20.7 6.5 56 15-71 23-88 (116)
439 1wvf_A 4-cresol dehydrogenase 22.9 47 0.0016 31.7 3.1 41 119-159 218-260 (520)
440 2m0o_A PHD finger protein 1; t 22.8 40 0.0014 23.0 1.7 12 55-66 53-64 (79)
441 3fut_A Dimethyladenosine trans 22.4 75 0.0026 27.4 4.0 34 14-48 110-143 (271)
442 2c60_A Human mitogen-activated 22.1 2.2E+02 0.0074 20.6 5.5 52 109-167 46-98 (111)
443 2e5q_A PHD finger protein 19; 21.9 27 0.00092 22.8 0.7 11 55-65 34-44 (63)
444 2jrh_A Mitogen-activated prote 21.7 2.1E+02 0.0073 20.0 5.3 62 109-179 19-81 (94)
445 3bbo_V Ribosomal protein L23; 21.4 18 0.00062 29.4 -0.2 58 16-76 132-191 (198)
446 2i9x_A Putative septation prot 21.4 1.2E+02 0.0042 21.2 4.1 26 40-65 5-30 (87)
447 2npt_B Mitogen-activated prote 21.3 2.3E+02 0.0078 20.2 6.5 62 109-179 35-97 (100)
448 4e8u_A Putative uncharacterize 21.2 82 0.0028 25.2 3.6 39 115-155 34-74 (172)
449 1fme_A FSD-EY peptide; beta-BE 21.1 57 0.0019 16.8 1.7 12 27-38 14-25 (28)
450 1tr0_A Stable protein 1; plant 20.1 2.4E+02 0.0082 20.0 6.7 57 15-71 10-79 (108)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=9e-38 Score=273.03 Aligned_cols=175 Identities=25% Similarity=0.404 Sum_probs=152.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...+.++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+.+++.. +.+ +.+
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g--~~i 87 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKG--KPV 87 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCC--ccc
Confidence 45577899999999999999999999999999999999999999999999999999999999999998766 444 777
Q ss_pred eeeccccccc---cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 018554 90 QVKYADGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (354)
Q Consensus 90 ~v~~~~~~~~---~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 166 (354)
++.++..... ...++|||+||++++|+++|+++|+.||.|++++|++|.. .++|||||+|.+.++|.+|++.|||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 88 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp EEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 7777654332 2367899999999999999999999999999999999854 36999999999999999999999998
Q ss_pred cccCCCceeEEEEecCChHHHHHHH
Q 018554 167 HKMEGSSVPLVVKWADTEKERQARR 191 (354)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~~~~~ 191 (354)
. ++| +.|+|+||++++++..+.
T Consensus 167 ~-~~g--~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 167 L-LND--RKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp E-ETT--EECEEEECCCHHHHHHHH
T ss_pred E-ECC--EEEEEEEcCCCcccchhh
Confidence 7 666 799999999887665443
No 2
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2e-37 Score=261.68 Aligned_cols=170 Identities=42% Similarity=0.790 Sum_probs=157.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCC--CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR--ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg--~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.++ +++|||||+|.+.++|++|++.+++..++.+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 67899999999999999999999999999999999999887 8999999999999999999999999887777788888
Q ss_pred eecccccccc--ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 018554 91 VKYADGELER--LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (354)
Q Consensus 91 v~~~~~~~~~--~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 168 (354)
+.+++.+... ..++|||+||+.++|+++|+++|+.||.|+++.++++.++.++|||||+|.+.++|.+|++.|||..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 8887655433 47899999999999999999999999999999999998899999999999999999999999999987
Q ss_pred cCCCceeEEEEecC
Q 018554 169 MEGSSVPLVVKWAD 182 (354)
Q Consensus 169 ~~g~~~~l~v~~a~ 182 (354)
.+|..++|.|+||+
T Consensus 162 ~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 162 MEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTCSSCCEEEECC
T ss_pred cCCCCCCeEEEecC
Confidence 87767899999986
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.9e-35 Score=247.44 Aligned_cols=165 Identities=28% Similarity=0.531 Sum_probs=151.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
.+++|||+|||.++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.+++.. +.+ +.++|.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~l~v~ 77 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR-LQT--KTIKVS 77 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc-cCC--ceEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999998866 444 788898
Q ss_pred ccccccc-cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccC
Q 018554 93 YADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (354)
Q Consensus 93 ~~~~~~~-~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 170 (354)
++..... ...++|||+||+.++++++|+++|++||.|++++++++. ++.++|||||+|.+.++|.+|++.|||.. ++
T Consensus 78 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 156 (167)
T 1fxl_A 78 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK-PS 156 (167)
T ss_dssp ECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CT
T ss_pred ecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc-cC
Confidence 8875543 346889999999999999999999999999999999985 88899999999999999999999999986 78
Q ss_pred CCceeEEEEec
Q 018554 171 GSSVPLVVKWA 181 (354)
Q Consensus 171 g~~~~l~v~~a 181 (354)
|+.++|.|+||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 87788999986
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.6e-35 Score=248.45 Aligned_cols=165 Identities=29% Similarity=0.523 Sum_probs=151.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
..++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.+++.. +.+ +.++|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT-VRN--KRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE-eCC--cEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999998866 444 788999
Q ss_pred ccccccc-cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccC
Q 018554 93 YADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (354)
Q Consensus 93 ~~~~~~~-~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 170 (354)
++..+.. ...++|||+||+.++++++|+++|+.||.|+++.++++. ++.++|+|||+|.+.++|.+|++.|||.. ++
T Consensus 79 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 157 (168)
T 1b7f_A 79 YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI-PE 157 (168)
T ss_dssp ECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CT
T ss_pred ecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE-ec
Confidence 8876543 346899999999999999999999999999999999996 88999999999999999999999999986 77
Q ss_pred CCceeEEEEec
Q 018554 171 GSSVPLVVKWA 181 (354)
Q Consensus 171 g~~~~l~v~~a 181 (354)
|..++|+|+||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 77789999986
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=8.2e-35 Score=250.37 Aligned_cols=174 Identities=24% Similarity=0.401 Sum_probs=146.3
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
+..+..+.++|||+|||+++|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++|++. ++.. +.+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~-~~g-- 81 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK-VDG-- 81 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE-ECC--
Confidence 344567889999999999999999999999999999999999999999999999999999999999977 4544 555
Q ss_pred ccceeecccccccc-------ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHH
Q 018554 87 SPLQVKYADGELER-------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 158 (354)
Q Consensus 87 ~~l~v~~~~~~~~~-------~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~ 158 (354)
+.|.|.++...... ..++|||+||+.++|+++|+++|+.||.|++|.|+++. ++.++|||||+|++.++|.+
T Consensus 82 ~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp EECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred EEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHH
Confidence 77888877544322 24799999999999999999999999999999999995 88999999999999999999
Q ss_pred HHHHhCCCcccCCCceeEEEEecCChHHHH
Q 018554 159 ALEAINGKHKMEGSSVPLVVKWADTEKERQ 188 (354)
Q Consensus 159 Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 188 (354)
|++. ++.. ++| +.|.|+||.++.+..
T Consensus 162 A~~~-~~~~-~~G--~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 162 IVIQ-KYHT-VNG--HNCEVRKALSKQEMA 187 (196)
T ss_dssp HHHC-SCCE-ETT--EECEEEECC------
T ss_pred HHHh-CCcE-ECC--EEEEEEecCChhHhc
Confidence 9986 6765 676 689999998876554
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.7e-34 Score=250.89 Aligned_cols=169 Identities=20% Similarity=0.348 Sum_probs=148.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...+.++|||+|||.++|+++|+++|++||+|.+|++++|+.+++++|||||+|.+.++|++|++.|++.. +.+ +.|
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~l 100 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM-LGG--RNI 100 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC-CC---CCC
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe-eCC--eeE
Confidence 34567899999999999999999999999999999999999999999999999999999999999998866 555 778
Q ss_pred eeeccccccc------------cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHH
Q 018554 90 QVKYADGELE------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQA 156 (354)
Q Consensus 90 ~v~~~~~~~~------------~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A 156 (354)
+|.++..... ...++|||+||+.++|+++|+++|+.||.|++|+|+++ .++.++|||||+|++.++|
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 101 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp EEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred EEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 8887654432 23579999999999999999999999999999999999 5889999999999999999
Q ss_pred HHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 157 LAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 157 ~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
.+|++.|||.. ++| +.|+|.|+...
T Consensus 181 ~~A~~~l~g~~-~~g--~~i~V~~a~~~ 205 (216)
T 2qfj_A 181 QDAVSSMNLFD-LGG--QYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHTTCB-CSS--SBCEEEECSSC
T ss_pred HHHHHHccCCE-eCC--cEEEEEEecCC
Confidence 99999999987 666 67999998754
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=240.04 Aligned_cols=162 Identities=22% Similarity=0.418 Sum_probs=146.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
++|||+|||.++|+++|+++|++||.|.+|++++|+. ++++|||||+|.+.++|++|++.+++.. +.+ +.+.+.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g--~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQ-IEN--NIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCc-cCC--CeeEEEEc
Confidence 6899999999999999999999999999999999985 7799999999999999999999998876 444 78888887
Q ss_pred cccc---ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccC
Q 018554 95 DGEL---ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (354)
Q Consensus 95 ~~~~---~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 170 (354)
.... ....++|||+||+.++|+++|+++|+.||.|.++.++++ .++.++|+|||+|.+.++|.+|++.|||.. ++
T Consensus 77 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 155 (166)
T 3md3_A 77 FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LN 155 (166)
T ss_dssp CCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ET
T ss_pred CCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-cC
Confidence 5543 334679999999999999999999999999999999998 688999999999999999999999999987 56
Q ss_pred CCceeEEEEecCC
Q 018554 171 GSSVPLVVKWADT 183 (354)
Q Consensus 171 g~~~~l~v~~a~~ 183 (354)
| +.|+|+||+.
T Consensus 156 g--~~i~v~~a~~ 166 (166)
T 3md3_A 156 G--RPLRINWAAK 166 (166)
T ss_dssp T--EECEEEESCC
T ss_pred C--cEEEEEecCC
Confidence 5 7899999863
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.1e-34 Score=243.11 Aligned_cols=163 Identities=26% Similarity=0.395 Sum_probs=144.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
++++|||+|||.++|+++|+++|++||.|.+|++++|+.+|+++|||||+|.+.++|++|++. . ..+.| +.+.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~-~~~~g--~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--Q-HILDG--KVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--C-CEETT--EECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--c-cccCC--eEcccc
Confidence 578999999999999999999999999999999999999999999999999999999999985 2 34555 677777
Q ss_pred ccccccc-cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccC
Q 018554 93 YADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (354)
Q Consensus 93 ~~~~~~~-~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 170 (354)
++..+.. ...++|||+||+.++|+++|+++|+.||.|+++.++++ .++.++|||||+|.+.++|.+|++ +++.. ++
T Consensus 77 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~-~~ 154 (167)
T 2cjk_A 77 RAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID-FK 154 (167)
T ss_dssp ECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC-SS
T ss_pred cccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE-eC
Confidence 7665433 33679999999999999999999999999999999998 479999999999999999999998 78765 66
Q ss_pred CCceeEEEEecCCh
Q 018554 171 GSSVPLVVKWADTE 184 (354)
Q Consensus 171 g~~~~l~v~~a~~~ 184 (354)
| +.|.|+||+++
T Consensus 155 g--~~i~V~~a~pk 166 (167)
T 2cjk_A 155 D--RKIEIKRAEPR 166 (167)
T ss_dssp S--SCEEEEECCCC
T ss_pred C--eEEEEeecCCC
Confidence 6 68999999764
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.4e-32 Score=250.49 Aligned_cols=177 Identities=21% Similarity=0.258 Sum_probs=159.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
...++|||+|||+++|+++|+++|+.||.|.+|.+++|+.+|+++|||||+|.+.++|.+|++.+++.. +.+ +.|.|
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g--~~i~v 169 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP-LGP--RTLYV 169 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE-eCC--cEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999998866 555 88999
Q ss_pred ecccccccc----ccceEEEecCCCCC-CHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 018554 92 KYADGELER----LEHKLFIGMLPKNV-SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (354)
Q Consensus 92 ~~~~~~~~~----~~~~l~V~~l~~~~-t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 166 (354)
.++..+... ..++|||+||+.++ |+++|+++|+.||.|++++|+++.++.++|+|||+|.+.++|.+|++.|||.
T Consensus 170 ~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 170 HWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp EECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred EECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 998765432 36799999999995 9999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCceeEEEEecCChHHHHHHHHHH
Q 018554 167 HKMEGSSVPLVVKWADTEKERQARRAQK 194 (354)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~~~~~~~~ 194 (354)
. ++| +.|.|+|++++..++....++
T Consensus 250 ~-~~g--~~l~v~~a~~~~~~~~~~~~~ 274 (284)
T 3smz_A 250 S-LGG--SHLRVSFCAPGPPGRSMLAAL 274 (284)
T ss_dssp E-ETT--EECEEEECCSSSCHHHHHHHH
T ss_pred c-cCC--eEEEEEEecCCCcccchhhhh
Confidence 7 565 799999999887766555444
No 10
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.5e-32 Score=238.01 Aligned_cols=160 Identities=18% Similarity=0.289 Sum_probs=136.9
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 12 EERVKLFVGQVP-KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 12 ~~~~~lfVg~Lp-~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
.+.++|||+||+ +++++++|+++|++||.|.+|+|+++ .+|||||+|.+.++|++||+.||+.. +.+ +.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~-~~g--~~l~ 73 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNF-MFG--QKMN 73 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCE-ECC--ceEE
Confidence 357899999999 89999999999999999999999876 36899999999999999999999877 555 7788
Q ss_pred eeccccccc--------------------------------------cccceEEEecCCCCCCHHHHHHhhccCCCe--e
Q 018554 91 VKYADGELE--------------------------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTI--K 130 (354)
Q Consensus 91 v~~~~~~~~--------------------------------------~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v--~ 130 (354)
|.+++.+.. ...++|||+||++++|+++|+++|++||.| .
T Consensus 74 v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~ 153 (205)
T 3tyt_A 74 VCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPT 153 (205)
T ss_dssp EEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCS
T ss_pred EEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceE
Confidence 887642110 113579999999999999999999999998 8
Q ss_pred EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCC--ceeEEEEec
Q 018554 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS--SVPLVVKWA 181 (354)
Q Consensus 131 ~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~--~~~l~v~~a 181 (354)
+++++.+. +.++|+|||+|++.++|.+||+.|||.. ++|. ..++.|+||
T Consensus 154 ~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~-~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 154 SVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQ-MKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCE-ECCSSSSSCEECEEE
T ss_pred EEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCC-ccCCCCCcceEEEec
Confidence 99999876 4457999999999999999999999987 5543 457888875
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=7.1e-33 Score=234.10 Aligned_cols=164 Identities=21% Similarity=0.327 Sum_probs=142.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
.+..+.++|||+|||.++++++|+++|++||.|.. .++++..+++++|||||+|.+.++|++|+ .+++.. +.+ +.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~ 82 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLK-VFG--NE 82 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEE-ETT--EE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCE-eCC--eE
Confidence 46678999999999999999999999999998776 45566667899999999999999999999 588866 444 88
Q ss_pred ceeeccccccc---cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 89 LQVKYADGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 89 l~v~~~~~~~~---~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
|+|.++..+.. ...++|||+||+.++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|||
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 83 IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp EEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred EEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 99988875433 347899999999999999999999999988766 56788899999999999999999999999
Q ss_pred CcccCCCceeEEEEecCCh
Q 018554 166 KHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~ 184 (354)
.. ++| +.|.|+||+++
T Consensus 159 ~~-~~g--~~i~v~~a~~k 174 (175)
T 1fje_B 159 AE-IDG--RSVSLYYTGEK 174 (175)
T ss_dssp EE-ETT--EEEEEEECSSC
T ss_pred CE-ECC--eEEEEEecCCC
Confidence 76 666 78999999764
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=1.7e-31 Score=242.98 Aligned_cols=162 Identities=21% Similarity=0.425 Sum_probs=141.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~----~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
.+....++|||+|||+++++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 79 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYD 79 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCe-eCC
Confidence 456789999999999999999977 8999999999999886 57899999999999999999999998866 555
Q ss_pred CCccceeeccccccc-----------------------------------------------------------------
Q 018554 85 ASSPLQVKYADGELE----------------------------------------------------------------- 99 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~----------------------------------------------------------------- 99 (354)
+.|+|.|++.+..
T Consensus 80 --~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 3pgw_A 80 --KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHM 157 (282)
T ss_pred --cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccC
Confidence 7888887754331
Q ss_pred -----------------------------------------------cccceEEEecCCCCCCHHHHHHhhccCCCeeEE
Q 018554 100 -----------------------------------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132 (354)
Q Consensus 100 -----------------------------------------------~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i 132 (354)
...++|||+||+.++|+++|+++|++||.|++|
T Consensus 158 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v 237 (282)
T 3pgw_A 158 PGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 237 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEE
Confidence 124679999999999999999999999999999
Q ss_pred EEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 133 QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 133 ~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
+|+.++ +|||||+|.+.++|.+|++.|||..+..| +.|+|+||+
T Consensus 238 ~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~ak 281 (282)
T 3pgw_A 238 RLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQN--NAMKISFAK 281 (282)
T ss_pred EEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCC--CEEEEEEec
Confidence 999764 58999999999999999999999874325 689999986
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=1.6e-31 Score=225.02 Aligned_cols=157 Identities=27% Similarity=0.443 Sum_probs=138.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~----G-------~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~ 80 (354)
++.++|||+|||.++|+++|+++|++| | .|.++.+.+ ++|||||+|.+.++|++|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 367899999999999999999999999 6 677776644 5789999999999999999 888766
Q ss_pred cCCCCCccceeeccccccc-cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHH
Q 018554 81 TLPGASSPLQVKYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 158 (354)
Q Consensus 81 ~~~g~~~~l~v~~~~~~~~-~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~ 158 (354)
+.+ +.++|.++..... ...++|||+||+.++|+++|+++|++||.|+++.+.++. ++.++|||||+|.+.++|.+
T Consensus 75 -~~g--~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 75 -FQG--QSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp -ETT--EECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred -ecC--ceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 555 7888888765432 336899999999999999999999999999999999994 89999999999999999999
Q ss_pred HHHHhCCCcccCCCceeEEEEec
Q 018554 159 ALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 159 Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
|++.|||.. ++| +.|.|+||
T Consensus 152 A~~~l~g~~-~~g--~~l~V~~A 171 (172)
T 2g4b_A 152 AIAGLNGMQ-LGD--KKLLVQRA 171 (172)
T ss_dssp HHHHHTTCE-ETT--EECEEEEC
T ss_pred HHHHcCCCE-ECC--eEEEEEeC
Confidence 999999987 565 78999987
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=1e-32 Score=237.61 Aligned_cols=160 Identities=26% Similarity=0.440 Sum_probs=137.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~----G-------~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~ 80 (354)
...++|||+|||+++|+++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357999999999999999999999999 4 5555554 456899999999999999999 887765
Q ss_pred cCCCCCccceeeccccccc---------------------cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-
Q 018554 81 TLPGASSPLQVKYADGELE---------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS- 138 (354)
Q Consensus 81 ~~~g~~~~l~v~~~~~~~~---------------------~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~- 138 (354)
+.+ +.|+|.++..... ...++|||+||+.++++++|+++|++||.|.++.+.++.
T Consensus 75 -~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 -FQG--QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 151 (198)
T ss_dssp -ETT--EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT
T ss_pred -EcC--ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC
Confidence 555 7888888754311 235899999999999999999999999999999999995
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 139 QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 139 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
++.++|||||+|.+.++|.+|++.|||.. ++| +.|.|+|++++
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 194 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQ-LGD--KKLLVQRASVG 194 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCE-ETT--EECEEEESCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEEECCCC
Confidence 89999999999999999999999999987 565 78999999765
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=4.7e-31 Score=232.90 Aligned_cols=165 Identities=20% Similarity=0.338 Sum_probs=142.1
Q ss_pred cccccCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 5 KKEKKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
........+.++|||+|||. ++++++|+++|++||.|.+|+|++|+ +|||||+|.+.++|++|++.|++.. +.
T Consensus 25 ~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~-~~ 98 (229)
T 2adc_A 25 AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHK-LH 98 (229)
T ss_dssp CCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCB-CS
T ss_pred CCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCe-EC
Confidence 34445567889999999999 99999999999999999999999985 6899999999999999999998866 45
Q ss_pred CCCccceeecccccc------------------------------------ccccceEEEecCCCCCCHHHHHHhhccCC
Q 018554 84 GASSPLQVKYADGEL------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYG 127 (354)
Q Consensus 84 g~~~~l~v~~~~~~~------------------------------------~~~~~~l~V~~l~~~~t~~~l~~~F~~~G 127 (354)
+ +.|+|.+++.+. ....++|||+||+.++++++|+++|+.||
T Consensus 99 g--~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 99 G--KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp S--SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred C--eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 5 788888775331 01157899999999999999999999999
Q ss_pred -CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccC-CCceeEEEEecCCh
Q 018554 128 -TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADTE 184 (354)
Q Consensus 128 -~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~-g~~~~l~v~~a~~~ 184 (354)
.|.+|+++.+ ++|+|||+|++.++|.+|++.|||.. ++ | +.|+|+|+++.
T Consensus 177 ~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~-~~~g--~~l~v~~a~~~ 228 (229)
T 2adc_A 177 GVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHD-LGEN--HHLRVSFSKST 228 (229)
T ss_dssp CCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCB-SSSS--CBCEEEECSSC
T ss_pred CCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCc-cCCC--CeEEEEEecCC
Confidence 9999999763 27899999999999999999999987 45 5 68999998753
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3.5e-31 Score=238.30 Aligned_cols=163 Identities=26% Similarity=0.424 Sum_probs=145.2
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.......++|||+|||.++|+++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|++.+++.. +.+ +
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~-i~g--~ 86 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTI-LKS--R 86 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcE-ECC--c
Confidence 344567789999999999999999999999999999999654 6899999999999999999998876 544 8
Q ss_pred cceeeccccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHh-CCC
Q 018554 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI-NGK 166 (354)
Q Consensus 88 ~l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l-~g~ 166 (354)
.|+|.++.. .++|||+||+..+|+++|+++|+.||.|++|.|+.+.++.++|||||+|.+.++|.+|++.| ++.
T Consensus 87 ~l~v~~a~~-----~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 87 PLRIRFATH-----GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGA 161 (261)
T ss_dssp ECEEEECCC-----SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred eeEeeeccc-----CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence 889988864 46899999999999999999999999999999999999999999999999999999999999 555
Q ss_pred cccCCCceeEEEEecCCh
Q 018554 167 HKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~ 184 (354)
.++.+..++|.|++++..
T Consensus 162 ~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 162 FLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EESSSSCCBCEEEECCCE
T ss_pred EEecCCCceEEEeecccc
Confidence 555556689999998755
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.2e-30 Score=238.57 Aligned_cols=165 Identities=19% Similarity=0.330 Sum_probs=141.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
...++|||+|||.++++++|+++|+.|| .|.+|.+++++. ++++|||||+|.+.++|.+|++.|++.. +.+ +.|.
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLK-IEG--YTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCE-eCC--cEEE
Confidence 4689999999999999999999999999 999999999986 8899999999999999999999998876 555 8888
Q ss_pred eecccccccc--------ccceEEEecCCCC-CCHHHHHHhhccCCCeeEEEEeeCCC--CCcceEEEEEeCCHHHHHHH
Q 018554 91 VKYADGELER--------LEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQ--QTSKGCAFLKYETKEQALAA 159 (354)
Q Consensus 91 v~~~~~~~~~--------~~~~l~V~~l~~~-~t~~~l~~~F~~~G~v~~i~i~~~~~--~~~~g~afV~f~~~~~A~~A 159 (354)
|.++.+.... ..++|||+||+.+ +|+++|+++|+.||.|++|+|+++.. +.++|||||+|.+.++|.+|
T Consensus 191 v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 191 TKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp EEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHH
T ss_pred EEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHH
Confidence 8887654322 2579999999999 99999999999999999999999876 99999999999999999999
Q ss_pred HHHhCCCcccCCCceeEEEEecCCh
Q 018554 160 LEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 160 i~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
+ .|||.. ++| +.|.|.||+++
T Consensus 271 ~-~l~g~~-~~g--~~i~V~~a~~k 291 (292)
T 2ghp_A 271 L-QMNRSL-LGN--REISVSLADKK 291 (292)
T ss_dssp G-GGTTEE-ETT--EEEEEEECCCC
T ss_pred H-HhcCCE-ECC--cEEEEEEecCC
Confidence 9 999987 665 78999999864
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.2e-30 Score=225.01 Aligned_cols=156 Identities=21% Similarity=0.368 Sum_probs=136.6
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 13 ERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 13 ~~~~lfVg~Lp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
+.++|||+|||. ++++++|+++|++||.|.+|++++|+ +|||||+|.+.++|++|++.|++.. +.+ +.|+|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~-~~g--~~l~v 73 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHK-LHG--KPIRI 73 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCC-CSS--CCCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCe-ecC--eEEEE
Confidence 468999999999 99999999999999999999999875 6899999999999999999998866 455 77888
Q ss_pred ecccccc------------------------------------ccccceEEEecCCCCCCHHHHHHhhccCC-CeeEEEE
Q 018554 92 KYADGEL------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQI 134 (354)
Q Consensus 92 ~~~~~~~------------------------------------~~~~~~l~V~~l~~~~t~~~l~~~F~~~G-~v~~i~i 134 (354)
.+++.+. ....++|||+||+.++++++|+++|+.|| .|.++++
T Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i 153 (198)
T 1qm9_A 74 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 153 (198)
T ss_dssp EECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE
T ss_pred EEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE
Confidence 7765331 01267899999999999999999999999 9999999
Q ss_pred eeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccC-CCceeEEEEecCC
Q 018554 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADT 183 (354)
Q Consensus 135 ~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~-g~~~~l~v~~a~~ 183 (354)
+.+. +|+|||+|.+.++|.+|++.|||.. ++ | +.|+|+|+++
T Consensus 154 ~~~~----~g~afV~f~~~~~A~~A~~~l~g~~-~~~g--~~l~v~~a~~ 196 (198)
T 1qm9_A 154 FQKD----RKMALIQMGSVEEAVQALIDLHNHD-LGEN--HHLRVSFSKS 196 (198)
T ss_dssp SSTT----SSCEEEECSSHHHHHHHHHHHTSSC-CSSC--CSCCEEEECC
T ss_pred EeCC----CcEEEEEeCCHHHHHHHHHHhcCCc-cCCC--CeEEEEeecc
Confidence 7643 7899999999999999999999987 45 5 6889999875
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.8e-30 Score=237.45 Aligned_cols=164 Identities=18% Similarity=0.243 Sum_probs=135.4
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.++|||+|||+++|+++|+++|+.||+|.+|+|++|+.+ ++|||||+|.+.++|.+|++ +++.. +.+ +
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~-~~g--~ 108 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKV-VGQ--N 108 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCE-ETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcE-eCC--c
Confidence 345677899999999999999999999999999999999999853 58999999999999999995 77655 555 7
Q ss_pred cceeeccccccccccceEEEecCCCCCCHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 018554 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (354)
Q Consensus 88 ~l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 166 (354)
.+.+.++. .++|||+||+.++++++|+++|+.|| .|.+|.++++..+.++|||||+|.+.++|.+|++.|||.
T Consensus 109 ~i~v~~~~------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 109 EIIVSHLT------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp ECEEEECC------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EEEEEECC------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 78888763 57899999999999999999999999 999999999987889999999999999999999999998
Q ss_pred cccCCCceeEEEEecCChHH
Q 018554 167 HKMEGSSVPLVVKWADTEKE 186 (354)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~ 186 (354)
. ++| +.|.|.|+++...
T Consensus 183 ~-~~g--~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 183 K-IEG--YTLVTKVSNPLEK 199 (292)
T ss_dssp E-ETT--EECEEEECCCC--
T ss_pred E-eCC--cEEEEEECCCCcc
Confidence 7 565 7899999987644
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3e-29 Score=228.36 Aligned_cols=158 Identities=22% Similarity=0.411 Sum_probs=141.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
+...++++|||+|||.++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|++.+++.. +.+ +.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~ 86 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSR-LRE--RE 86 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCe-eCC--eE
Confidence 3455789999999999999999999999999 999888 4578999999999999999999998877 555 78
Q ss_pred ceeeccccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 018554 89 LQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKH 167 (354)
Q Consensus 89 l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 167 (354)
+.|.++.. .++|||+||+.++|+++|+++|+.||.|.++.++++ .++.++|||||+|.+.++|.+|++.|+|..
T Consensus 87 i~v~~~~~-----~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 87 LSVQLQPT-----DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp CEEEECCC-----SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEecCC-----CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 88887543 478999999999999999999999999999999998 489999999999999999999999999976
Q ss_pred ccCCCceeEEEEecCCh
Q 018554 168 KMEGSSVPLVVKWADTE 184 (354)
Q Consensus 168 ~~~g~~~~l~v~~a~~~ 184 (354)
++| +.|.|.|++..
T Consensus 162 -~~g--~~i~v~~a~~~ 175 (284)
T 3smz_A 162 -LGP--RTLYVHWTDAG 175 (284)
T ss_dssp -ETT--EECEEEECCGG
T ss_pred -eCC--cEEEEEECCCC
Confidence 555 78999999764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=1.2e-23 Score=174.69 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=108.4
Q ss_pred EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC----Cccceeecc-------ccccccccceEEEecCC
Q 018554 43 EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA----SSPLQVKYA-------DGELERLEHKLFIGMLP 111 (354)
Q Consensus 43 ~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~----~~~l~v~~~-------~~~~~~~~~~l~V~~l~ 111 (354)
+++|+++.. +++|||||+|.+.++|++|++.+++...+.+. ......... ........++|||+||+
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 567788764 69999999999999999999988654322221 011111110 11122336899999999
Q ss_pred CCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 112 KNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 112 ~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
+++|+++|+++|+.||.|++|+|++| .++.++|||||+|.+.++|.+|++.|||.. ++| +.|+|+|++..
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 150 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDG--RELRVQMARYG 150 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE-SSS--SEEEEEEECCS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEEEEECCCC
Confidence 99999999999999999999999999 489999999999999999999999999976 666 68999999765
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=6e-23 Score=161.13 Aligned_cols=101 Identities=18% Similarity=0.281 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
..++|||+|||+++||++|+++|++||.|.+|+|++|+ +++||||||+|.+.++|++||+.|++.. +.+ +.|+|.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~-~~g--~~i~V~ 78 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML-LND--RKVFVG 78 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEE
Confidence 46789999999999999999999999999999999996 4589999999999999999999998876 555 788898
Q ss_pred ccccccccc---------cceEEEecCCCCCCHHH
Q 018554 93 YADGELERL---------EHKLFIGMLPKNVSEAE 118 (354)
Q Consensus 93 ~~~~~~~~~---------~~~l~V~~l~~~~t~~~ 118 (354)
+++.+..+. ..+|||+||+.++|++-
T Consensus 79 ~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 79 RFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ESSCCCC----------------------------
T ss_pred ECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 876544322 45799999999999874
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=148.02 Aligned_cols=83 Identities=27% Similarity=0.456 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..+.++|||+|||.++|+++|+++|++||+|.+|+|++|+.||+++|||||+|.+.++|++|++.||+.. +.| +.|+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~-~~g--r~l~ 92 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLR-LQS--KTIK 92 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCE-ECC--EEEE
Confidence 4456899999999999999999999999999999999999999999999999999999999999999876 555 8899
Q ss_pred eecccc
Q 018554 91 VKYADG 96 (354)
Q Consensus 91 v~~~~~ 96 (354)
|+|+++
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999865
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=3.3e-21 Score=158.43 Aligned_cols=121 Identities=21% Similarity=0.395 Sum_probs=103.6
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-cCCccCCCCCccceeecccccc-----------------ccccceEEEecCCCCC
Q 018554 53 RASRGCCFVICPSRQEADKAVNAC-HNKKTLPGASSPLQVKYADGEL-----------------ERLEHKLFIGMLPKNV 114 (354)
Q Consensus 53 g~~~G~aFV~f~~~~~A~~Ai~~l-~~~~~~~g~~~~l~v~~~~~~~-----------------~~~~~~l~V~~l~~~~ 114 (354)
.+-+|+++|+|.+.++|++|++.+ |+.. +.| .+.+.++..+. ....++|||+||++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~-~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNG-VDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHT-CCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCC-CCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 467899999999999999999999 7755 544 67777665421 1236899999999999
Q ss_pred CHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 115 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 115 t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
|+++|+++|++||.|++|+|+++ ++|||||+|.+.++|.+|++.|||.. ++| +.|+|+|++++
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 148 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRT-LCG--CRVRVELSNGE 148 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSC-SSS--SCCEEEECCCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEEEcCCC
Confidence 99999999999999999999987 58999999999999999999999977 666 68999998765
No 25
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=2.1e-20 Score=144.24 Aligned_cols=96 Identities=38% Similarity=0.655 Sum_probs=86.8
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
........+.++|||+|||.++++++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++|++.||+..++.+
T Consensus 4 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 4 GSSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp CCCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 34456677889999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred CCccceeecccccccc
Q 018554 85 ASSPLQVKYADGELER 100 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~~ 100 (354)
..+.|+|.+++.+..+
T Consensus 84 ~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 84 MNRPIQVKPADSESRG 99 (106)
T ss_dssp CSSCCEEEECCCCSCC
T ss_pred CCceEEEEECCccccc
Confidence 6799999999876543
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=145.36 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..+.++|||+||+++++|++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++||+.||+.. +.+ +.|+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~-~~g--r~i~ 79 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTS-VMG--NIIH 79 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999999877 555 7888
Q ss_pred eecccccc
Q 018554 91 VKYADGEL 98 (354)
Q Consensus 91 v~~~~~~~ 98 (354)
|.++....
T Consensus 80 V~~a~~~~ 87 (110)
T 3s8s_A 80 AQLDIKGQ 87 (110)
T ss_dssp EEECSTTH
T ss_pred EEECCCCc
Confidence 88876543
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-21 Score=144.87 Aligned_cols=84 Identities=20% Similarity=0.365 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
+++|||+|||.++||++|+++|++|| +|.+|+|++|+.|+++||||||+|.+.++|++|++.+++...+.| +.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEE
Confidence 47899999999999999999999999 899999999999999999999999999999999998766555666 889999
Q ss_pred ccccccc
Q 018554 93 YADGELE 99 (354)
Q Consensus 93 ~~~~~~~ 99 (354)
+++++..
T Consensus 79 ~a~~~~~ 85 (91)
T 2lxi_A 79 YSDPKPK 85 (91)
T ss_dssp CCCSCCC
T ss_pred EcCCCCC
Confidence 9887654
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=8.1e-21 Score=143.26 Aligned_cols=86 Identities=20% Similarity=0.396 Sum_probs=76.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc---cCC
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL--VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK---TLP 83 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~--v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~---~~~ 83 (354)
.....-.+|||+|||+++|+++|+++|++||. |.+|++++|+.||++||||||+|.+.++|++|++.||+.. .+.
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 34567889999999999999999999999995 6799999999999999999999999999999999999864 355
Q ss_pred CCCccceeecccc
Q 018554 84 GASSPLQVKYADG 96 (354)
Q Consensus 84 g~~~~l~v~~~~~ 96 (354)
| +.|.|+|++.
T Consensus 84 G--r~i~V~~Aks 94 (95)
T 2lkz_A 84 G--KTIGVDFAKS 94 (95)
T ss_dssp T--EEEEEEECCC
T ss_pred C--EEEEEEEccC
Confidence 5 8899998864
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=9.5e-20 Score=140.32 Aligned_cols=94 Identities=37% Similarity=0.653 Sum_probs=83.1
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
.........++|||+|||.++++++|+++|++||.|.+|.|++|+ +++++|||||+|.+.++|++||+.||+..+..+.
T Consensus 7 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~ 85 (105)
T 2dnh_A 7 GSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA 85 (105)
T ss_dssp CCCCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 334455678999999999999999999999999999999999998 6999999999999999999999999998865555
Q ss_pred Cccceeecccccccc
Q 018554 86 SSPLQVKYADGELER 100 (354)
Q Consensus 86 ~~~l~v~~~~~~~~~ 100 (354)
.+.|+|.+++.+.++
T Consensus 86 ~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 86 SSSLVVKFADTDKES 100 (105)
T ss_dssp SSCCEEEESCSSCCC
T ss_pred CccEEEEECccCccc
Confidence 588999999876654
No 30
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=138.29 Aligned_cols=79 Identities=27% Similarity=0.528 Sum_probs=73.6
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+|||.++|+++|+++|++||.|++|+|++|+ ++.++|||||+|.+.++|++|++.|||.. ++| +.|+|+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~-~~g--r~l~V~~ 95 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLR-LQS--KTIKVSY 95 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEEEE
Confidence 5789999999999999999999999999999999984 79999999999999999999999999987 666 7899999
Q ss_pred cCC
Q 018554 181 ADT 183 (354)
Q Consensus 181 a~~ 183 (354)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.4e-19 Score=141.86 Aligned_cols=92 Identities=23% Similarity=0.334 Sum_probs=81.9
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
....+..+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.||+.. +.+
T Consensus 17 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g- 94 (115)
T 2cpz_A 17 GSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ-IGM- 94 (115)
T ss_dssp SCCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT-
T ss_pred ccCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE-ECC-
Confidence 334556678999999999999999999999999999999999999999999999999999999999999998866 555
Q ss_pred Cccceeecccccccc
Q 018554 86 SSPLQVKYADGELER 100 (354)
Q Consensus 86 ~~~l~v~~~~~~~~~ 100 (354)
+.|+|.+++.+...
T Consensus 95 -~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 95 -KRLKVQLKRSKNDS 108 (115)
T ss_dssp -EECEEECCCCSCCC
T ss_pred -EEEEEEEcCCCCcC
Confidence 88999998766543
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=136.57 Aligned_cols=88 Identities=33% Similarity=0.508 Sum_probs=79.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
..+....++|||+|||.++++++|+++|++||.|.+|.|++|+.+++++|||||+|.+.++|++|++ +++.. +.+ +
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~-~~g--~ 79 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD-IMG--K 79 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB-SSS--C
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE-ECC--e
Confidence 4566788999999999999999999999999999999999999999999999999999999999998 87765 555 7
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.+++.+..
T Consensus 80 ~l~V~~a~~~~~ 91 (99)
T 2dgs_A 80 KVEVKRAEPRDS 91 (99)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEECCCCcc
Confidence 899998876654
No 33
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=8.6e-20 Score=142.98 Aligned_cols=106 Identities=17% Similarity=0.317 Sum_probs=93.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||.++++++|+++|+.||.|.+|.+++|. +++|||||+|.+.++|.+|++.||+.. +.+ +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l 77 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFN-VSN--RYL 77 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCB-SSS--CBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCE-ECC--eEE
Confidence 45678999999999999999999999999999999999864 569999999999999999999998876 444 889
Q ss_pred eeeccccccccccceEEEecCCCCCCHHHHHHhhccCCC
Q 018554 90 QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 128 (354)
Q Consensus 90 ~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~ 128 (354)
.|.++..+... .+++...++++|+++|++||.
T Consensus 78 ~v~~a~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 78 VVLYYNANRAF-------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEEECCHHHHT-------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCChhh-------hhhhHhHhHHHHHHHHHHhCC
Confidence 99999876554 467788899999999999984
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=139.40 Aligned_cols=91 Identities=21% Similarity=0.376 Sum_probs=82.4
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
..+.+..+.++|||+|||.++++++|+++|++||+|.+|.|++|+.+++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g- 84 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDH- 84 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE-ETT-
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe-eCC-
Confidence 445667789999999999999999999999999999999999999999999999999999999999999998876 555
Q ss_pred Cccceeeccccccc
Q 018554 86 SSPLQVKYADGELE 99 (354)
Q Consensus 86 ~~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 85 -~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 85 -LILNVEWAKPSTN 97 (103)
T ss_dssp -EECEEEESSCCCC
T ss_pred -cEEEEEECCCCCC
Confidence 8899999876654
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=7.4e-19 Score=136.37 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=77.5
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+||++++|+++|+++|++||.|++|+|++|. ++.++|||||+|++.++|++|++.|||.. ++| +.|+|.+
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~-~~g--r~i~V~~ 82 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTS-VMG--NIIHAQL 82 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEEEEE
Confidence 5789999999999999999999999999999999995 69999999999999999999999999987 566 7899999
Q ss_pred cCChHHHHH
Q 018554 181 ADTEKERQA 189 (354)
Q Consensus 181 a~~~~~~~~ 189 (354)
+.....+..
T Consensus 83 a~~~~~~~~ 91 (110)
T 3s8s_A 83 DIKGQQRMK 91 (110)
T ss_dssp CSTTHHHHH
T ss_pred CCCCcHHHH
Confidence 987765543
No 36
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=138.25 Aligned_cols=92 Identities=24% Similarity=0.348 Sum_probs=82.7
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
.....+....++|||+|||+++++++|+++|++||.|.+|.|++|+.+++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 84 (105)
T 1x5u_A 6 SGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK-LYG 84 (105)
T ss_dssp SCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB-CSS
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe-ECC
Confidence 3445667788999999999999999999999999999999999999999999999999999999999999998866 555
Q ss_pred CCccceeeccccccc
Q 018554 85 ASSPLQVKYADGELE 99 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 85 --~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 85 --KPIRVNKASAHNK 97 (105)
T ss_dssp --CBCEEEETTTTSC
T ss_pred --eEEEEEECCCCCc
Confidence 8899999876654
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=134.84 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..+.++|||+|||.++++++|+++|++||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +.|+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 78 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE-LAG--RPMR 78 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC-SSS--SCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe-eCC--cEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999998866 555 8899
Q ss_pred eeccccccc
Q 018554 91 VKYADGELE 99 (354)
Q Consensus 91 v~~~~~~~~ 99 (354)
|.+++.+..
T Consensus 79 V~~a~~~~~ 87 (95)
T 2dnz_A 79 VGHVTERLD 87 (95)
T ss_dssp EEESSCCCC
T ss_pred EEEcccccC
Confidence 999876654
No 38
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=2.4e-19 Score=140.47 Aligned_cols=93 Identities=23% Similarity=0.415 Sum_probs=83.4
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
.....+..+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.|++.. +.+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 84 (115)
T 2dgo_A 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG 84 (115)
T ss_dssp CSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE-ETT
T ss_pred CcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 3455677889999999999999999999999999999999999999999999999999999999999999998866 555
Q ss_pred CCccceeecccccccc
Q 018554 85 ASSPLQVKYADGELER 100 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~~ 100 (354)
+.|+|.+++.+...
T Consensus 85 --~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 --RQIRTNWATRKPPA 98 (115)
T ss_dssp --EECEEEESSCCCCC
T ss_pred --EEEEEEEccCCCCC
Confidence 88999998766543
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=138.88 Aligned_cols=92 Identities=24% Similarity=0.332 Sum_probs=82.8
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
.+...+..+.++|||+|||+++++++|+++|++||.|.+|.|++|+.|++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 82 (103)
T 2dnm_A 4 GSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE-LDG 82 (103)
T ss_dssp CCCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC-BTT
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE-ECC
Confidence 3455677789999999999999999999999999999999999999999999999999999999999999998876 555
Q ss_pred CCccceeeccccccc
Q 018554 85 ASSPLQVKYADGELE 99 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~ 99 (354)
+.|+|.+++....
T Consensus 83 --~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 83 --RELRVQVARYGRR 95 (103)
T ss_dssp --BCCEEEECSSCCS
T ss_pred --cEEEEEECCcCCC
Confidence 8899999876543
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=137.77 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=79.1
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.++|||+|||.++++++|+++|++||.|.+|.|++|+.|++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 93 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--Q 93 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB-SSS--S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE-ECC--c
Confidence 3345677899999999999999999999999999999999999999999999999999999999999998876 555 8
Q ss_pred cceeecccccc
Q 018554 88 PLQVKYADGEL 98 (354)
Q Consensus 88 ~l~v~~~~~~~ 98 (354)
.|+|.+++.+.
T Consensus 94 ~l~V~~a~~~~ 104 (106)
T 1p27_B 94 PISVDWCFVRG 104 (106)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEeecCCC
Confidence 89999887653
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=133.27 Aligned_cols=83 Identities=24% Similarity=0.444 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
.+.++|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +.|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG--RQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEE
Confidence 467899999999999999999999999999999999999999999999999999999999999998866 555 88899
Q ss_pred eccccc
Q 018554 92 KYADGE 97 (354)
Q Consensus 92 ~~~~~~ 97 (354)
.+++.+
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 888653
No 42
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=136.43 Aligned_cols=89 Identities=22% Similarity=0.381 Sum_probs=79.2
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~-~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
+.+....++|||+|||+++|+++|+++|++ ||.|.+|.|++|+ +++++|||||+|.+.++|++|++.|++...+.+
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g-- 79 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS-- 79 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS--
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC--
Confidence 345678899999999999999999999999 9999999999999 899999999999999999999999988663555
Q ss_pred ccceeeccccccc
Q 018554 87 SPLQVKYADGELE 99 (354)
Q Consensus 87 ~~l~v~~~~~~~~ 99 (354)
+.|+|.++..+..
T Consensus 80 ~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 80 KPVRLSVAIPKAS 92 (104)
T ss_dssp SCCCCCBCCCCCS
T ss_pred EeEEEEEccCCCc
Confidence 7888888865543
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=2.8e-19 Score=142.94 Aligned_cols=89 Identities=22% Similarity=0.353 Sum_probs=80.9
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
...+..+.++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+.|++.. +.+
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~-i~g-- 115 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDG-- 115 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC-SSS--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 44567788999999999999999999999999999999999999999999999999999999999999998866 555
Q ss_pred ccceeecccccc
Q 018554 87 SPLQVKYADGEL 98 (354)
Q Consensus 87 ~~l~v~~~~~~~ 98 (354)
+.|+|.+++.+.
T Consensus 116 ~~l~V~~a~~~~ 127 (129)
T 2kxn_B 116 RRIRVDFSITKR 127 (129)
T ss_dssp SCCEESCCSSSS
T ss_pred EEEEEEEecCCC
Confidence 889999987654
No 44
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=136.64 Aligned_cols=89 Identities=28% Similarity=0.439 Sum_probs=80.2
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.++|||+|||.++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 82 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS-VDG--R 82 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC-TTS--C
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--e
Confidence 3456788999999999999999999999999999999999999999999999999999999999999998876 555 7
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.+++.+..
T Consensus 83 ~l~v~~a~~~~~ 94 (102)
T 1x5s_A 83 QIRVDQAGKSSD 94 (102)
T ss_dssp CCEEEEEECCCC
T ss_pred EEEEEECCCCCC
Confidence 889988876543
No 45
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=1.1e-19 Score=135.94 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=70.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G--~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
.+|||+|||+++|+++|+++|++|| .|.+|++++|+.||+++|||||+|.+.++|++|++.||+.. +.| +.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~-~~g--r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHG--QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC-SSS--CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe-eCC--EEEEEE
Confidence 5899999999999999999999999 99999999999999999999999999999999999999876 555 888998
Q ss_pred ccccccc
Q 018554 93 YADGELE 99 (354)
Q Consensus 93 ~~~~~~~ 99 (354)
++.+...
T Consensus 79 ~~~~~~~ 85 (90)
T 3p5t_L 79 PSNKLEH 85 (90)
T ss_dssp CC-----
T ss_pred ECCCCcc
Confidence 8876543
No 46
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=135.44 Aligned_cols=89 Identities=22% Similarity=0.336 Sum_probs=80.3
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
...+.+..+.++|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 84 (95)
T 2cqc_A 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDG 84 (95)
T ss_dssp CCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETT
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 4455677788999999999999999999999999999999999999999999999999999999999999998866 555
Q ss_pred CCccceeecccc
Q 018554 85 ASSPLQVKYADG 96 (354)
Q Consensus 85 ~~~~l~v~~~~~ 96 (354)
+.|+|.+++.
T Consensus 85 --~~l~v~~a~~ 94 (95)
T 2cqc_A 85 --RRIRVSGPSS 94 (95)
T ss_dssp --EEEEEECCSC
T ss_pred --EEEEEEecCC
Confidence 8888888753
No 47
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=137.32 Aligned_cols=90 Identities=24% Similarity=0.436 Sum_probs=80.9
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
...+...+.++|||+|||.++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|++|++.|++.. +.|
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-i~g- 95 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE-LAG- 95 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC-SSS-
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC-
Confidence 334567788999999999999999999999999999999999999999999999999999999999999998866 555
Q ss_pred Cccceeecccccc
Q 018554 86 SSPLQVKYADGEL 98 (354)
Q Consensus 86 ~~~l~v~~~~~~~ 98 (354)
+.|+|.+++.+.
T Consensus 96 -~~l~V~~a~~k~ 107 (108)
T 2jrs_A 96 -RPMKVGHVTERT 107 (108)
T ss_dssp -SCCEEECSCSSC
T ss_pred -EEEEEEEcccCC
Confidence 889999887653
No 48
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=136.77 Aligned_cols=91 Identities=29% Similarity=0.440 Sum_probs=81.4
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeC-CCCCCcccEEEEEeCCHHHHHHHHHHh-cCCccCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD-KTTRASRGCCFVICPSRQEADKAVNAC-HNKKTLP 83 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d-~~tg~~~G~aFV~f~~~~~A~~Ai~~l-~~~~~~~ 83 (354)
....+....++|||+|||+++++++|+++|++||.|.+|+|++| +.+++++|||||+|.+.++|++||+.| |+.. +.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~~ 85 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH-LY 85 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB-SS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe-EC
Confidence 44556778999999999999999999999999999999999999 788999999999999999999999999 7766 55
Q ss_pred CCCccceeeccccccc
Q 018554 84 GASSPLQVKYADGELE 99 (354)
Q Consensus 84 g~~~~l~v~~~~~~~~ 99 (354)
+ +.|+|.+++.+..
T Consensus 86 g--~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 G--RRLVLEWADSEVT 99 (107)
T ss_dssp S--CBCEEEECCCCCC
T ss_pred C--CEEEEEeCCCCCC
Confidence 5 7899999877654
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=136.24 Aligned_cols=91 Identities=24% Similarity=0.390 Sum_probs=81.1
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
..++....+.++|||+|||+++++++|+++|++||.|.+|.|++| +++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 82 (103)
T 2d9p_A 6 SGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI-VAT 82 (103)
T ss_dssp CCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCB-SSS
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCE-eCC
Confidence 345566778999999999999999999999999999999999998 79999999999999999999999998877 444
Q ss_pred CCccceeecccccccc
Q 018554 85 ASSPLQVKYADGELER 100 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~~ 100 (354)
+.|+|.+++.+..+
T Consensus 83 --~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 83 --KPLYVALAQRKEER 96 (103)
T ss_dssp --SBCEEEECSSCCCC
T ss_pred --cEEEEEEecccccC
Confidence 88999998776543
No 50
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=136.59 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=79.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
....+.++|||+|||+++++++|+++|++||+|.+|.|++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +.
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 79 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV-FQG--RM 79 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE-SSS--CE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE-ECC--cE
Confidence 345688999999999999999999999999999999999999899999999999999999999999998866 555 88
Q ss_pred ceeeccccccc
Q 018554 89 LQVKYADGELE 99 (354)
Q Consensus 89 l~v~~~~~~~~ 99 (354)
|+|.+++.+..
T Consensus 80 l~V~~a~~~~~ 90 (99)
T 1whw_A 80 LHVLPSTIKKE 90 (99)
T ss_dssp EEEEECCCCST
T ss_pred EEEEEcCCCcc
Confidence 99999877654
No 51
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=135.89 Aligned_cols=89 Identities=27% Similarity=0.408 Sum_probs=78.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC-
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD-EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS- 86 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~-~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~- 86 (354)
......++|||+|||.++++++|+++|++||.|. +|+|++|+.+++++|||||+|.+.++|++|++.||+.. +.+..
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~~ 82 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP-LPGATP 82 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE-ESSCSS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc-cCCCCc
Confidence 4456789999999999999999999999999999 99999999999999999999999999999999998866 55522
Q ss_pred -ccceeecccccc
Q 018554 87 -SPLQVKYADGEL 98 (354)
Q Consensus 87 -~~l~v~~~~~~~ 98 (354)
+.|+|.|++...
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 128888887643
No 52
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=3.7e-19 Score=130.83 Aligned_cols=81 Identities=28% Similarity=0.480 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeec
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~ 93 (354)
+++|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +.|+|.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LNG--RPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe-eCC--cEEEEEe
Confidence 3689999999999999999999999999999999999999999999999999999999999998877 555 8899998
Q ss_pred cccc
Q 018554 94 ADGE 97 (354)
Q Consensus 94 ~~~~ 97 (354)
++.+
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8764
No 53
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=134.94 Aligned_cols=88 Identities=18% Similarity=0.321 Sum_probs=79.1
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.++|||+|||.++++++|+++|++||.|.+|+|++|+ +++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 86 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMT-IKE--N 86 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEE-SSS--C
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCE-ECC--E
Confidence 3456678999999999999999999999999999999999999 89999999999999999999999998865 555 8
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.+++.+..
T Consensus 87 ~l~v~~a~~~~~ 98 (100)
T 2do4_A 87 IIKVAISNSGPS 98 (100)
T ss_dssp EEEEEECCCCSC
T ss_pred EEEEEECCCCCC
Confidence 899999876643
No 54
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=137.98 Aligned_cols=90 Identities=23% Similarity=0.332 Sum_probs=80.5
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc------CCc
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH------NKK 80 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~------~~~ 80 (354)
...+..+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++|++.+| +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999998 544
Q ss_pred cCCCCCccceeeccccccc
Q 018554 81 TLPGASSPLQVKYADGELE 99 (354)
Q Consensus 81 ~~~g~~~~l~v~~~~~~~~ 99 (354)
+.+ +.|+|.++..+..
T Consensus 88 -~~g--~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 88 -LDG--RQLKVDLAVTRDE 103 (111)
T ss_dssp -SSS--CEEEEECCCCCCC
T ss_pred -EcC--EEEEEEECCCCcc
Confidence 555 8899999876544
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=3.4e-19 Score=131.68 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...+.++|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +.|
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 79 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--RTI 79 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE-ECC--cEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999998876 555 788
Q ss_pred eeeccc
Q 018554 90 QVKYAD 95 (354)
Q Consensus 90 ~v~~~~ 95 (354)
+|.+++
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 888764
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=138.07 Aligned_cols=90 Identities=22% Similarity=0.326 Sum_probs=81.1
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
......+.++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 5 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 81 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG-- 81 (102)
T ss_dssp SSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE-ETT--
T ss_pred cCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 44556788999999999999999999999999999999999999999999999999999999999999998866 555
Q ss_pred ccceeeccccccc
Q 018554 87 SPLQVKYADGELE 99 (354)
Q Consensus 87 ~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 82 ~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 82 RTIRVNLAKPMRI 94 (102)
T ss_dssp EEEEEEECCCCCC
T ss_pred cEEEEEeCCCCCC
Confidence 8899999876654
No 57
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=4.8e-19 Score=134.10 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
++++|||+|||.++++++|+++|++||.|.+|++++|+.+++++|||||+|.+.++|++|++.|++.. +.+ +.|+|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ-LGS--RFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999998866 555 889999
Q ss_pred ccccccc
Q 018554 93 YADGELE 99 (354)
Q Consensus 93 ~~~~~~~ 99 (354)
+++.+..
T Consensus 78 ~a~~~~~ 84 (96)
T 2x1f_A 78 YSSNSDI 84 (96)
T ss_dssp ECSCSSG
T ss_pred EcCCCCC
Confidence 9876543
No 58
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.1e-19 Score=146.54 Aligned_cols=120 Identities=19% Similarity=0.271 Sum_probs=77.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeeccc-cccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEee
Q 018554 58 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 136 (354)
Q Consensus 58 ~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~~-~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~ 136 (354)
+.|++|+|...+.+|++.+++...... . ...+.. .......++|||+||++++|+++|+++|+.||.|++|+|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~--~--~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGR--G--SMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ---------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCC--C--CCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 678899999999999999877653222 1 112222 22233468999999999999999999999999999999999
Q ss_pred CC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 137 GS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 137 ~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
+. ++.++|||||+|++.++|++|++.||+.. ++| +.|+|+|++..
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~-i~g--~~l~V~~a~~~ 127 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDG--RELRVQMARYG 127 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCC-SSS--SCCEEEECCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEEECCCC
Confidence 84 78999999999999999999999999987 666 68999999764
No 59
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.4e-19 Score=138.08 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 11 SEERVKLFVGQVPK------HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~------~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
....++|||+|||. ++++++|+++|++||.|.+|+|++|+.||+++|||||+|.+.++|++||+.||+..+ .+
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-~g 81 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL-DL 81 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS-SS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc-CC
Confidence 34578999999999 999999999999999999999999999999999999999999999999999998775 32
Q ss_pred CCccceeeccccc
Q 018554 85 ASSPLQVKYADGE 97 (354)
Q Consensus 85 ~~~~l~v~~~~~~ 97 (354)
.+.|+|.++.++
T Consensus 82 -~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 -KHRLFLYTMKDV 93 (100)
T ss_dssp -SCBCEEEESHHH
T ss_pred -CeEEEEEECchh
Confidence 278888888654
No 60
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=133.28 Aligned_cols=85 Identities=21% Similarity=0.405 Sum_probs=77.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~--------i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~ 79 (354)
.......++|||+|||.++++++|+++|++||.|.+ |++++|+.|++++|||||+|.+.++|++|++.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445678899999999999999999999999999999 999999999999999999999999999999999987
Q ss_pred ccCCCCCccceeeccc
Q 018554 80 KTLPGASSPLQVKYAD 95 (354)
Q Consensus 80 ~~~~g~~~~l~v~~~~ 95 (354)
. +.+ +.|+|.+++
T Consensus 87 ~-~~g--~~l~V~~A~ 99 (99)
T 2la6_A 87 E-FSG--NPIKVSFAT 99 (99)
T ss_dssp B-SSS--SBCEEEECC
T ss_pred E-eCC--cEEEEEecC
Confidence 6 555 788888763
No 61
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=133.64 Aligned_cols=86 Identities=27% Similarity=0.464 Sum_probs=77.6
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
......+.++|||+|||.++++++|+++|++||+|.+|.+++|+.+++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 85 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ-LFG-- 85 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE-ETT--
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe-eCC--
Confidence 34456788999999999999999999999999999999999999999999999999999999999999998866 555
Q ss_pred ccceeeccc
Q 018554 87 SPLQVKYAD 95 (354)
Q Consensus 87 ~~l~v~~~~ 95 (354)
+.|+|.+++
T Consensus 86 ~~l~v~~ak 94 (94)
T 2e5h_A 86 RVIKASIAI 94 (94)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEecC
Confidence 788888764
No 62
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=136.95 Aligned_cols=89 Identities=26% Similarity=0.385 Sum_probs=77.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
++|||+|||.++|+++|+++|++||+|.+|.+++| ++|||||+|.+.++|++|++.|++.. +.+ +.|+|.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKV-ICG--SRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSC-SSS--CCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCe-ECC--cEEEEEEc
Confidence 58999999999999999999999999999999987 67899999999999999999998876 555 77889888
Q ss_pred ccccccc-----------cceEEEecCC
Q 018554 95 DGELERL-----------EHKLFIGMLP 111 (354)
Q Consensus 95 ~~~~~~~-----------~~~l~V~~l~ 111 (354)
+.+.... ..+||||+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 73 TGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCcccCCCCCccccCCCceecCCCC
Confidence 6543221 5689999986
No 63
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=134.67 Aligned_cols=83 Identities=17% Similarity=0.337 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-ccCCCCCcc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KTLPGASSP 88 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~-~~~~g~~~~ 88 (354)
...+.++|||+|||+++||++|+++|++||+|.+|+|++| ||||||+|++.++|++|++.+++. ..+.| +.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G--r~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETT--EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECC--EE
Confidence 4668899999999999999999999999999999999986 589999999999999999988653 44655 89
Q ss_pred ceeecccccccc
Q 018554 89 LQVKYADGELER 100 (354)
Q Consensus 89 l~v~~~~~~~~~ 100 (354)
|+|.|++.+..+
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999998765443
No 64
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=5.6e-19 Score=137.17 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=80.0
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.++|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~ 96 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMG--Q 96 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--c
Confidence 3455677899999999999999999999999999999999999999999999999999999999999998876 555 8
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.+++.+..
T Consensus 97 ~l~V~~a~~~~~ 108 (110)
T 1oo0_B 97 TIQVDWCFVKGP 108 (110)
T ss_dssp ECEEEESEESSC
T ss_pred EEEEEEcccCCC
Confidence 899999876543
No 65
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=142.99 Aligned_cols=90 Identities=27% Similarity=0.417 Sum_probs=80.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
..+....++|||+|||.++++++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 112 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN-ILN--K 112 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE-CSS--C
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--e
Confidence 3456678999999999999999999999999999999999999999999999999999999999999998866 555 7
Q ss_pred cceeecccccccc
Q 018554 88 PLQVKYADGELER 100 (354)
Q Consensus 88 ~l~v~~~~~~~~~ 100 (354)
.|+|.+++.+..+
T Consensus 113 ~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 113 RLKVALAASGHQR 125 (139)
T ss_dssp EEEEEESSCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 8999998876554
No 66
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=3.3e-19 Score=140.31 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=77.0
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
...+..+.++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 109 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ-VGT-- 109 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34456678999999999999999999999999999999999999999999999999999999999999998866 555
Q ss_pred ccceeeccc
Q 018554 87 SPLQVKYAD 95 (354)
Q Consensus 87 ~~l~v~~~~ 95 (354)
+.|+|.+++
T Consensus 110 ~~l~V~~ak 118 (118)
T 2khc_A 110 KRLKVQLKK 118 (118)
T ss_dssp EECCEEEC-
T ss_pred EEEEEEecC
Confidence 778887763
No 67
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-19 Score=134.44 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCC---CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT---TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~---tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
..+.++|||+|||+++++++|+++|++||.|.+|.|++|+. |++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 78 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT-VDG--H 78 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE-ETT--E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe-eCC--e
Confidence 35789999999999999999999999999999999999887 77999999999999999999999998876 555 8
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.+++.+..
T Consensus 79 ~l~V~~a~~~~~ 90 (98)
T 2cpf_A 79 KLEVRISERATK 90 (98)
T ss_dssp ECEEECSSCSSC
T ss_pred EEEEEEccCCCC
Confidence 899999876554
No 68
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-19 Score=134.69 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV-NIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i-~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
..+.++|||+|||.++++++|+++|++||.|.+| +|++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +.|
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l 78 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCN--RPI 78 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE-ETT--EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECC--EEE
Confidence 3568999999999999999999999999999999 999999999999999999999999999999998877 544 889
Q ss_pred eeecccccccc
Q 018554 90 QVKYADGELER 100 (354)
Q Consensus 90 ~v~~~~~~~~~ 100 (354)
+|.+++.+..+
T Consensus 79 ~v~~a~~~~~~ 89 (96)
T 1x5t_A 79 TVSYAFKKDSK 89 (96)
T ss_dssp EEEESCCCCCC
T ss_pred EEEEecccCCC
Confidence 99998766543
No 69
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=143.96 Aligned_cols=88 Identities=23% Similarity=0.412 Sum_probs=78.1
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC----cc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK----KT 81 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~--i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~----~~ 81 (354)
.......++|||+|||+++||++|+++|++||.|.. |+|++|+.||++||||||+|.+. +|.+|++.||+. .
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~- 94 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT- 94 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC-
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc-
Confidence 345577899999999999999999999999999976 99999999999999999999999 999999999987 4
Q ss_pred CCCCCccceeeccccccc
Q 018554 82 LPGASSPLQVKYADGELE 99 (354)
Q Consensus 82 ~~g~~~~l~v~~~~~~~~ 99 (354)
+.+ +.|+|++++.+..
T Consensus 95 ~~g--r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDG--KTINVEFAKGSKR 110 (131)
T ss_dssp GGG--CCCCCEECCCSCC
T ss_pred CCC--EEEEEEECCCCCC
Confidence 444 7888888876543
No 70
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=134.61 Aligned_cols=80 Identities=16% Similarity=0.399 Sum_probs=72.6
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCC--eeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCc---ccCCCcee
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGT--IKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH---KMEGSSVP 175 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~--v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~---~~~g~~~~ 175 (354)
-++|||+||++++|+++|+++|++||. |.+|++++|+ ++.+||||||+|.+.++|++|++.|||.. .++| ++
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G--r~ 86 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG--KT 86 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT--EE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC--EE
Confidence 468999999999999999999999995 6799999994 79999999999999999999999999974 4677 78
Q ss_pred EEEEecCC
Q 018554 176 LVVKWADT 183 (354)
Q Consensus 176 l~v~~a~~ 183 (354)
|.|+||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999975
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=9.7e-19 Score=137.17 Aligned_cols=85 Identities=29% Similarity=0.464 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
+..+.++|||+|||.++++++|+++|++||.|.+|.|++|+ +++++|||||+|.+.++|++|++.|++.. +.+ +.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-~~g--~~l 78 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKS-LHG--KAI 78 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCB-CSS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--EEE
Confidence 35678999999999999999999999999999999999998 89999999999999999999999998877 555 789
Q ss_pred eeecccccc
Q 018554 90 QVKYADGEL 98 (354)
Q Consensus 90 ~v~~~~~~~ 98 (354)
+|.+++...
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 999887544
No 72
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=138.09 Aligned_cols=88 Identities=30% Similarity=0.436 Sum_probs=79.4
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
....++...++|||+|||+++++++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++||+.+++ .+.+
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g- 85 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDG- 85 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETT-
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCC-
Confidence 3455677889999999999999999999999999999999999999999999999999999999999999976 4655
Q ss_pred Cccceeeccccc
Q 018554 86 SSPLQVKYADGE 97 (354)
Q Consensus 86 ~~~l~v~~~~~~ 97 (354)
+.|+|.++..+
T Consensus 86 -~~l~V~~a~~~ 96 (116)
T 2cqd_A 86 -RKANVNLAYLG 96 (116)
T ss_dssp -EECEEEESTTT
T ss_pred -EEEEEEEcccC
Confidence 88899988654
No 73
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=135.90 Aligned_cols=90 Identities=27% Similarity=0.323 Sum_probs=80.3
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
....+..+.++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+. ++.. +.+
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~-~~g- 84 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT-LDG- 84 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE-ETT-
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe-ECC-
Confidence 3455678899999999999999999999999999999999999999999999999999999999999998 6644 655
Q ss_pred Cccceeeccccccc
Q 018554 86 SSPLQVKYADGELE 99 (354)
Q Consensus 86 ~~~l~v~~~~~~~~ 99 (354)
+.|+|.++..+..
T Consensus 85 -~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 85 -RNIDPKPCTPRGM 97 (105)
T ss_dssp -EEEBCCCSCCSSC
T ss_pred -EEEEEEEccCCCC
Confidence 7889988876554
No 74
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1e-18 Score=134.07 Aligned_cols=89 Identities=22% Similarity=0.444 Sum_probs=79.1
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
.........++|||+|||+++++++|+++|++|| |.+|+|++|+.|++++|||||+|.+.++|++|+ .||+.. +.+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g- 82 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL-LGD- 82 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE-ETT-
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe-ECC-
Confidence 3445567889999999999999999999999997 999999999999999999999999999999999 898866 555
Q ss_pred Cccceeeccccccc
Q 018554 86 SSPLQVKYADGELE 99 (354)
Q Consensus 86 ~~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 83 -~~l~V~~a~~~~~ 95 (103)
T 2dng_A 83 -RSLRVDIAEGRKQ 95 (103)
T ss_dssp -EECEEEECCCCCC
T ss_pred -eEEEEEEecCCCC
Confidence 8899999876544
No 75
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=145.07 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G--~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.+.++|||+|||+++|+++|+++|++|| .|.+|+|++|+.||+++|||||+|.+.++|++||+.|++.. +.| +.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~-~~G--r~l 129 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV-LNG--EKV 129 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE-ETT--EEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEe
Confidence 3568999999999999999999999999 99999999999999999999999999999999999998876 555 889
Q ss_pred eeeccccc
Q 018554 90 QVKYADGE 97 (354)
Q Consensus 90 ~v~~~~~~ 97 (354)
+|.++..+
T Consensus 130 ~V~~a~~~ 137 (156)
T 3n9u_C 130 DVRPATRQ 137 (156)
T ss_dssp EEEECCHH
T ss_pred EEEEcCCC
Confidence 99988654
No 76
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8e-19 Score=134.90 Aligned_cols=91 Identities=14% Similarity=0.301 Sum_probs=80.1
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT-RASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~t-g~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
.+........++|||+|||+++++++|+++|++|| |.+|.|++|+.| ++++|||||+|.+.++|++|| .|++.. +.
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~ 82 (104)
T 1wi8_A 6 SGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LG 82 (104)
T ss_dssp CCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE-ET
T ss_pred CCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE-eC
Confidence 34455667889999999999999999999999999 999999999998 999999999999999999999 998876 55
Q ss_pred CCCccceeecccccccc
Q 018554 84 GASSPLQVKYADGELER 100 (354)
Q Consensus 84 g~~~~l~v~~~~~~~~~ 100 (354)
+ +.|+|.+++.+...
T Consensus 83 g--~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 83 N--KRIRVDVADQAQDK 97 (104)
T ss_dssp T--EECEEEECCCCCCC
T ss_pred C--cEEEEEEccCCCCC
Confidence 5 88999988766543
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.5e-19 Score=137.14 Aligned_cols=89 Identities=24% Similarity=0.305 Sum_probs=80.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--------EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~--------~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~ 79 (354)
..+..+.++|||+|||.++++++|+++|++||.|. .|+|++|+.+++++|||||+|.+.++|++||+.||+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34667889999999999999999999999999999 6999999999999999999999999999999999887
Q ss_pred ccCCCCCccceeeccccccc
Q 018554 80 KTLPGASSPLQVKYADGELE 99 (354)
Q Consensus 80 ~~~~g~~~~l~v~~~~~~~~ 99 (354)
. +.+ +.|+|.+++.+..
T Consensus 89 ~-~~g--~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 D-FQG--SKLKVSLARKKPP 105 (113)
T ss_dssp E-ETT--EECEEECSSCCCC
T ss_pred c-cCC--CEEEEEECCCCCC
Confidence 6 555 8899999877654
No 78
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=7.5e-19 Score=137.63 Aligned_cols=83 Identities=29% Similarity=0.471 Sum_probs=73.4
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
..+|||+||++++|+++|+++|++||.|++|+|++|.. .+||||||+|++.++|++|++.||+.. ++| +.|.|+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~-~~g--~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGML-LND--RKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEEEC
Confidence 46899999999999999999999999999999999854 479999999999999999999999987 666 78999999
Q ss_pred CChHHHH
Q 018554 182 DTEKERQ 188 (354)
Q Consensus 182 ~~~~~~~ 188 (354)
+.+..+.
T Consensus 81 ~~~~~~~ 87 (115)
T 4f25_A 81 KSRKERE 87 (115)
T ss_dssp SCCCC--
T ss_pred CCccccc
Confidence 8765543
No 79
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-19 Score=136.58 Aligned_cols=87 Identities=25% Similarity=0.392 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.+...++|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 80 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE-FSG--RAL 80 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBS-CSS--SCB
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-eCC--cEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999998866 555 789
Q ss_pred eeeccccccc
Q 018554 90 QVKYADGELE 99 (354)
Q Consensus 90 ~v~~~~~~~~ 99 (354)
+|.+++.+..
T Consensus 81 ~v~~a~~~~~ 90 (104)
T 1p1t_A 81 RVDNAASEKN 90 (104)
T ss_dssp EEEETTCTTH
T ss_pred EEEeCCCccc
Confidence 9998876544
No 80
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=1.3e-18 Score=134.00 Aligned_cols=86 Identities=48% Similarity=0.814 Sum_probs=78.2
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+||+.++++++|+++|++||.|++|.|+++.++.++|||||+|.+.++|++|++.||+..+.+|..+.|.|+|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 46899999999999999999999999999999999998899999999999999999999999999886555447899999
Q ss_pred cCChHH
Q 018554 181 ADTEKE 186 (354)
Q Consensus 181 a~~~~~ 186 (354)
++.+.+
T Consensus 94 a~~~~~ 99 (105)
T 2dnh_A 94 ADTDKE 99 (105)
T ss_dssp SCSSCC
T ss_pred CccCcc
Confidence 987643
No 81
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-19 Score=131.00 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..+.++|||+|||+++++++|+++|++||.|.+|.|++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +.++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~~~ 78 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG-VQA--QMAK 78 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT-CCE--ESCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe-Eee--EEEe
Confidence 3578999999999999999999999999999999999999999999999999999999999999998866 444 6666
Q ss_pred eeccc
Q 018554 91 VKYAD 95 (354)
Q Consensus 91 v~~~~ 95 (354)
++++.
T Consensus 79 ~~~~~ 83 (85)
T 1x4e_A 79 QSGPS 83 (85)
T ss_dssp SSCCC
T ss_pred ecCCC
Confidence 66543
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=134.18 Aligned_cols=88 Identities=23% Similarity=0.415 Sum_probs=77.4
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC----
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG---- 84 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g---- 84 (354)
.+..+.++|||+|||+++++++|+++|++||.|.+|+|++|+ +++++|||||+|.+.++|++|++.||+..+-..
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 455678999999999999999999999999999999999999 899999999999999999999999998774211
Q ss_pred -CCccceeeccccc
Q 018554 85 -ASSPLQVKYADGE 97 (354)
Q Consensus 85 -~~~~l~v~~~~~~ 97 (354)
..++|.|+|+++.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 2477888888753
No 83
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=133.90 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=74.4
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.++....++|||+|||+++|+++|+++|++||.|.+|.|++|+. ++++|||||+|.+.++|.+||+ +++.. +.| +
T Consensus 5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~-~~g--r 79 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQK-YKE--T 79 (103)
T ss_dssp CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCC-CTT--T
T ss_pred ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCE-ECC--E
Confidence 34566789999999999999999999999999999999999998 9999999999999999999998 76655 655 7
Q ss_pred cceeecccc
Q 018554 88 PLQVKYADG 96 (354)
Q Consensus 88 ~l~v~~~~~ 96 (354)
.|.|.++..
T Consensus 80 ~l~V~~~~~ 88 (103)
T 1s79_A 80 DLLILFKDD 88 (103)
T ss_dssp TCEEEEHHH
T ss_pred EEEEEEchH
Confidence 888887653
No 84
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=131.45 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=75.5
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
........++|||+|||+++++++|+++|++||+|.+|+|++|+. ++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g-- 84 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIR-LYG-- 84 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCE-ETT--
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 345567889999999999999999999999999999999999986 9999999999999999999999998876 555
Q ss_pred ccceeeccc
Q 018554 87 SPLQVKYAD 95 (354)
Q Consensus 87 ~~l~v~~~~ 95 (354)
+.|+|.+++
T Consensus 85 ~~l~V~~a~ 93 (95)
T 2ywk_A 85 RPINVSGPS 93 (95)
T ss_dssp EECEEECCC
T ss_pred CEEEEEEcC
Confidence 888888875
No 85
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-19 Score=133.91 Aligned_cols=81 Identities=20% Similarity=0.429 Sum_probs=73.2
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCC-CeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G-~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
+++|||+|||.++|+++|+++|++|| .|++|+|++| .++.+||||||+|.+.++|.+|++.+++...++| +.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEE
Confidence 46899999999999999999999999 8999999998 4789999999999999999999998866555776 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
||+++
T Consensus 79 ~a~~~ 83 (91)
T 2lxi_A 79 YSDPK 83 (91)
T ss_dssp CCCSC
T ss_pred EcCCC
Confidence 99765
No 86
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=7.1e-19 Score=136.38 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=73.8
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.++..+.++|||+|||.++++++|+++|++||.|.+|+|++|+.||+++|||||+|.+.++|++|++.+ + ..+.| +
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~-~~l~g--~ 94 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-R-HELDS--K 94 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-C-EEETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-C-CcCCC--E
Confidence 345678899999999999999999999999999999999999999999999999999999999999986 4 44666 7
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.++..+..
T Consensus 95 ~l~V~~a~~~~~ 106 (109)
T 2rs2_A 95 TIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 888888876544
No 87
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=3.8e-18 Score=127.93 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...+.++|||+|||.++++++|+++|++||.|.+|+|+++ +++++|||||+|.+.++|++|++.||+.. +.+ +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l 78 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMK-LSG--REI 78 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCC-BTT--BCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--cEE
Confidence 4567899999999999999999999999999999999985 68999999999999999999999998876 555 788
Q ss_pred eeeccccccc
Q 018554 90 QVKYADGELE 99 (354)
Q Consensus 90 ~v~~~~~~~~ 99 (354)
+|.+++....
T Consensus 79 ~v~~a~~~~~ 88 (92)
T 2dgv_A 79 DVRIDRNASG 88 (92)
T ss_dssp CCEECSCCSS
T ss_pred EEEEcCCCCC
Confidence 8988876543
No 88
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=1.5e-18 Score=128.87 Aligned_cols=84 Identities=26% Similarity=0.417 Sum_probs=72.5
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
...+..+.++|||+|||.++++++|+++|++||.|.+|++++|+.|++++|||||+|.+.++|++|++. ++.. +.|
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~-~~g-- 79 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR-LDG-- 79 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE-ECC--
Confidence 345667899999999999999999999999999999999999999999999999999999999999965 4544 555
Q ss_pred ccceeecc
Q 018554 87 SPLQVKYA 94 (354)
Q Consensus 87 ~~l~v~~~ 94 (354)
+.|+|+++
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 67777654
No 89
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.2e-18 Score=137.19 Aligned_cols=89 Identities=24% Similarity=0.320 Sum_probs=79.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.++|||+|||.++|+++|+++|++||.|.+|.|+.|+.+++++|||||+|.+.++|++||+.||+.. +.+ +
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 92 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--Q 92 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB-SSS--S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe-eCC--e
Confidence 3455678899999999999999999999999999999999999999999999999999999999999998877 555 7
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|.|.++..+..
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 889998865543
No 90
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=130.63 Aligned_cols=90 Identities=24% Similarity=0.411 Sum_probs=79.1
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
........+.++|||+|||+++++++|+++|++||.|.+|+|++|+. .++|||||+|.+.++|++|++.||+.. +.+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 82 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTV-VEG 82 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCE-ETT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 34456677889999999999999999999999999999999999875 389999999999999999999998876 555
Q ss_pred CCccceeeccccccc
Q 018554 85 ASSPLQVKYADGELE 99 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 83 --~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 83 --RKIEVNNATARVM 95 (103)
T ss_dssp --EECEEEECCSSCC
T ss_pred --EEEEEEEcccCCC
Confidence 8899999876544
No 91
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=2.5e-18 Score=142.07 Aligned_cols=88 Identities=24% Similarity=0.378 Sum_probs=79.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
....+.++|||+|||.++|+++|+++|++||+|.+|.|++|+.|++++|||||+|.+.++|++||+.||+.. +.+ +.
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~ 110 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR-LDD--RI 110 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE-ETT--EE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--eE
Confidence 344578999999999999999999999999999999999999999999999999999999999999998866 555 88
Q ss_pred ceeeccccccc
Q 018554 89 LQVKYADGELE 99 (354)
Q Consensus 89 l~v~~~~~~~~ 99 (354)
|+|.|++....
T Consensus 111 l~V~~a~~~~~ 121 (156)
T 1h2v_Z 111 IRTDWDAGFKE 121 (156)
T ss_dssp CEEEEESCCCT
T ss_pred EEEEECCCCCC
Confidence 99999876543
No 92
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=2.6e-18 Score=132.67 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=75.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.......++|||+|||.++++++|+++|++||.|.+|.|++|+ +++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVP-LDG--R 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCE-eCC--c
Confidence 4456778999999999999999999999999999999999999 89999999999999999999999998876 455 7
Q ss_pred cceeeccc
Q 018554 88 PLQVKYAD 95 (354)
Q Consensus 88 ~l~v~~~~ 95 (354)
.|+|.++.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 88888764
No 93
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=133.33 Aligned_cols=87 Identities=23% Similarity=0.289 Sum_probs=77.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.......++|||+|||.++++++|+++|++||.|.+|+|++|+ +++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 84 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQL-LFD--R 84 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCE-eCC--C
Confidence 3456678999999999999999999999999999999999998 49999999999999999999999998876 555 7
Q ss_pred cceeecccccc
Q 018554 88 PLQVKYADGEL 98 (354)
Q Consensus 88 ~l~v~~~~~~~ 98 (354)
.|+|.+++...
T Consensus 85 ~l~v~~a~~~~ 95 (114)
T 2do0_A 85 PMHVKMDERAL 95 (114)
T ss_dssp ECEEEECSCCC
T ss_pred EEEEEEcccCC
Confidence 88998886543
No 94
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=133.98 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-eCCCCCCcccEEEEEeCCHHHHHHHHHHhc-CCccCCCCCc
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNII-KDKTTRASRGCCFVICPSRQEADKAVNACH-NKKTLPGASS 87 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~-v~~i~i~-~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~-~~~~~~g~~~ 87 (354)
..+.++|||+|||+++++++|+++|++||. |.+|.++ +|+.|++++|||||+|.+.++|++|++.|+ +...+.+ +
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--H 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT--B
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC--C
Confidence 457899999999999999999999999998 9999998 899999999999999999999999999995 3344665 8
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.|++.+..
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 899999876654
No 95
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=129.10 Aligned_cols=84 Identities=14% Similarity=0.362 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCC-cccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~-~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
.+.++|||+|||.++++++|+++|++||.|.+|.+++|+.++. ++|||||+|.+.++|++|++.||+.. +.+ +.|+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 78 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ-IDG--QEIT 78 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe-ECC--eEEE
Confidence 3578999999999999999999999999999999999988766 99999999999999999999998876 555 7888
Q ss_pred eecccccc
Q 018554 91 VKYADGEL 98 (354)
Q Consensus 91 v~~~~~~~ 98 (354)
|.++....
T Consensus 79 v~~a~~~~ 86 (88)
T 4a8x_A 79 ATAVLAPW 86 (88)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 88876543
No 96
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=131.17 Aligned_cols=89 Identities=21% Similarity=0.425 Sum_probs=78.0
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
...+....++|||+|||+++++++|+++|++||.|.+|+|++|+.+ ++|||||+|.+.++|++|++.||+.. +.+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~-~~g-- 82 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRK-ILG-- 82 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCC-cCC--
Confidence 3456678899999999999999999999999999999999999653 78999999999999999999998866 555
Q ss_pred ccceeecccccccc
Q 018554 87 SPLQVKYADGELER 100 (354)
Q Consensus 87 ~~l~v~~~~~~~~~ 100 (354)
+.|+|.+++.+..+
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 83 KEVKVNWATTPSSQ 96 (103)
T ss_dssp EEEEEEECCCTTCC
T ss_pred CeEEEEECCCCccc
Confidence 88999998765543
No 97
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=130.51 Aligned_cols=88 Identities=19% Similarity=0.312 Sum_probs=74.5
Q ss_pred ccccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC-CccC
Q 018554 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN-KKTL 82 (354)
Q Consensus 4 ~~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~-~~~~ 82 (354)
+..++....+.++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|++|++.+++ ...+
T Consensus 5 s~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 78 (101)
T 2cq1_A 5 SSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL 78 (101)
T ss_dssp CCCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3445666778899999999999999999999999999999998875 68999999999999999998853 2335
Q ss_pred CCCCccceeeccccccc
Q 018554 83 PGASSPLQVKYADGELE 99 (354)
Q Consensus 83 ~g~~~~l~v~~~~~~~~ 99 (354)
.| +.|+|.|++.+..
T Consensus 79 ~G--r~l~V~~a~~~~~ 93 (101)
T 2cq1_A 79 RN--QPIYIQYSNHKEL 93 (101)
T ss_dssp TT--EECEEEECSCSSC
T ss_pred CC--cEEEEEEcCcccC
Confidence 55 8999999876544
No 98
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=130.41 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=74.5
Q ss_pred ccccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-cC
Q 018554 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK-TL 82 (354)
Q Consensus 4 ~~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~-~~ 82 (354)
+..+.....+.++|||+|||++++|++|+++|++||.|.+|.|+++ ||||||+|.+.++|++|++.|++.. .+
T Consensus 5 ~~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 5 SSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3445556778899999999999999999999999999999998874 5899999999999999999987543 35
Q ss_pred CCCCccceeeccccccc
Q 018554 83 PGASSPLQVKYADGELE 99 (354)
Q Consensus 83 ~g~~~~l~v~~~~~~~~ 99 (354)
.+ +.|+|.|++.+..
T Consensus 79 ~G--r~l~V~~a~~~~~ 93 (104)
T 1wex_A 79 AG--QQAFFNYSTSKRI 93 (104)
T ss_dssp SS--SBCEEEECSSSSC
T ss_pred CC--EEEEEEEccCccc
Confidence 44 8899999876543
No 99
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.9e-18 Score=125.00 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
.+..|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.+.++|++|++.||+.. +.+ +.|+|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~-l~g--r~I~V~ 76 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCV-LAN--TTIFAE 76 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEE-ETT--EEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCE-ECC--cEEEEE
Confidence 578899999999999999999999999999999865 67999999999999999999998866 555 777777
Q ss_pred cc
Q 018554 93 YA 94 (354)
Q Consensus 93 ~~ 94 (354)
++
T Consensus 77 ~A 78 (89)
T 2wbr_A 77 SP 78 (89)
T ss_dssp CC
T ss_pred EC
Confidence 65
No 100
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=130.03 Aligned_cols=88 Identities=24% Similarity=0.275 Sum_probs=77.6
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
.+....+.++|||+|||+++++++|+++|++||.|.+|.|++|+.+++++|||||+|.+.++|++||+. + ..+.+
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~-~~~~g-- 82 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--R-HMIDG-- 82 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--C-EEETT--
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--C-CeeCC--
Confidence 455667889999999999999999999999999999999999999999999999999999999999984 3 34555
Q ss_pred ccceeeccccccc
Q 018554 87 SPLQVKYADGELE 99 (354)
Q Consensus 87 ~~l~v~~~~~~~~ 99 (354)
+.|.|.++..+..
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 83 RWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEECCCTTCC
T ss_pred eEEEEEecCCCCc
Confidence 7889988876543
No 101
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=133.55 Aligned_cols=85 Identities=15% Similarity=0.326 Sum_probs=73.3
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-ccCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KTLPGA 85 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~-~~~~g~ 85 (354)
.+....+.++|||+|||++++|++|+++|++||.|.+|+|+++ ||||||+|++.++|++|++.+++. ..+.|
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G- 96 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG- 96 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT-
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC-
Confidence 3445667899999999999999999999999999999999876 589999999999999999998752 34555
Q ss_pred Cccceeeccccccc
Q 018554 86 SSPLQVKYADGELE 99 (354)
Q Consensus 86 ~~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 97 -r~l~V~~a~~k~~ 109 (119)
T 2ad9_A 97 -QPIYIQFSNHKEL 109 (119)
T ss_dssp -BCCEEEECSSSSC
T ss_pred -eEEEEEEccCCCC
Confidence 8999999876544
No 102
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.8e-18 Score=124.66 Aligned_cols=75 Identities=29% Similarity=0.433 Sum_probs=68.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
+|||+|||+++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|++|++ +++.. +.+ +.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~-~~g--~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE-INN--KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC-SSS--CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE-ECC--EEEEEEeC
Confidence 69999999999999999999999999999999999999999999999999999999998 77755 555 77777764
No 103
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=2.9e-18 Score=127.73 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
+.++|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|++|+ .+|+.. +.+ +.|+|.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~-~~g--~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL-FRG--RQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE-ETT--EECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE-ECC--cEEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999 898876 555 888998
Q ss_pred ccccc
Q 018554 93 YADGE 97 (354)
Q Consensus 93 ~~~~~ 97 (354)
+++..
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 88754
No 104
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=7.9e-18 Score=138.84 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=79.1
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCC--CeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G--~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
.++|||+||++++|+++|+++|+.|| .|.+|+|++| .++.++|||||+|.+.++|++||+.|||.. ++| +.|.|
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~-~~G--r~l~V 131 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV-LNG--EKVDV 131 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE-ETT--EECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEeEE
Confidence 57999999999999999999999999 9999999999 589999999999999999999999999987 666 78999
Q ss_pred EecCChHHHHHHHHH
Q 018554 179 KWADTEKERQARRAQ 193 (354)
Q Consensus 179 ~~a~~~~~~~~~~~~ 193 (354)
++|+.+..+..+...
T Consensus 132 ~~a~~~~~~~~e~~~ 146 (156)
T 3n9u_C 132 RPATRQNLSQFEAQA 146 (156)
T ss_dssp EECCHHHHHHHHHHH
T ss_pred EEcCCCcchhhhhhc
Confidence 999877665544433
No 105
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.1e-19 Score=138.37 Aligned_cols=85 Identities=24% Similarity=0.375 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..+.++|||+|||.++++++|+++|++||.|.+|.|++|+.|++++|||||+|.+.++|++|| .||+.. +.+ +.|+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~ 97 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQR-LLG--VPII 97 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEE-ETT--EEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCE-eCC--eEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999 998766 555 8899
Q ss_pred eeccccccc
Q 018554 91 VKYADGELE 99 (354)
Q Consensus 91 v~~~~~~~~ 99 (354)
|.+++.+..
T Consensus 98 V~~a~~~~~ 106 (114)
T 2cq4_A 98 VQASQAEKN 106 (114)
T ss_dssp EEEHHHHHH
T ss_pred EEecCCCcc
Confidence 998876543
No 106
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=126.23 Aligned_cols=76 Identities=28% Similarity=0.429 Sum_probs=69.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
++|||+|||.++++++|+++|++||+|.+|.+++|+.+++++|||||+|.+.++|++|++.++ ..+.| +.++|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~~g--~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDS--KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCCSS--CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--CccCC--EEEEEEec
Confidence 589999999999999999999999999999999999999999999999999999999999987 44665 67777765
No 107
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=3.3e-18 Score=142.76 Aligned_cols=124 Identities=24% Similarity=0.354 Sum_probs=75.8
Q ss_pred EEeCCHHHHHHHHHHhcCCccCCCCCccceeecc---------------------ccccccccceEEEecCCCCCCHHHH
Q 018554 61 VICPSRQEADKAVNACHNKKTLPGASSPLQVKYA---------------------DGELERLEHKLFIGMLPKNVSEAEV 119 (354)
Q Consensus 61 V~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~---------------------~~~~~~~~~~l~V~~l~~~~t~~~l 119 (354)
.+|++.++|+.|+..++++.. ..+.+.+...+. .+......++|||+||++++++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~-~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAK-HRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccc-cccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 678888888888887765442 222222222221 1111223568999999999999999
Q ss_pred HHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCChHHHH
Q 018554 120 SALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 188 (354)
Q Consensus 120 ~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 188 (354)
+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||+.|||.. +.| +.|.|.|+..+..+.
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMG--QTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEESEECC---
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEEEEecCCCCCC
Confidence 999999999999999998 588999999999999999999999999976 565 789999997665443
No 108
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=2.5e-18 Score=132.51 Aligned_cols=86 Identities=38% Similarity=0.678 Sum_probs=78.2
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
....++|||+||+.++|+++|+++|++||.|++|+|+++. ++.++|||||+|.+.++|.+|++.||+..++.+..+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3446899999999999999999999999999999999984 689999999999999999999999999887766668999
Q ss_pred EEecCCh
Q 018554 178 VKWADTE 184 (354)
Q Consensus 178 v~~a~~~ 184 (354)
|+|++.+
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999865
No 109
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.7e-18 Score=128.07 Aligned_cols=82 Identities=28% Similarity=0.465 Sum_probs=75.5
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||+.++|+++|+++|++||.|++|+|+.+.++.++|||||+|.+.++|.+|++.||+.. ++| +.|+|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~ 91 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMT-IKE--NIIKVA 91 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEE-SSS--CEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999976 666 689999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++++
T Consensus 92 ~a~~~ 96 (100)
T 2do4_A 92 ISNSG 96 (100)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99765
No 110
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=124.66 Aligned_cols=80 Identities=25% Similarity=0.549 Sum_probs=73.0
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+||+.++++++|+++|++||.|.+++++++ .++.++|||||+|.+.++|++|++.|||.. ++| +.|+|+|
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~~ 82 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG--RQIRTNW 82 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEEe
Confidence 578999999999999999999999999999999999 488999999999999999999999999976 666 7899999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
++.+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 111
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=1.1e-17 Score=122.92 Aligned_cols=79 Identities=23% Similarity=0.535 Sum_probs=73.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.+|||+|||.++++++|+++|+.||.|.++.++++ .++.++|||||+|.+.++|++|++.|||.. ++| +.|+|+|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LNG--RPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe-eCC--cEEEEEec
Confidence 68999999999999999999999999999999998 689999999999999999999999999987 565 78999999
Q ss_pred CCh
Q 018554 182 DTE 184 (354)
Q Consensus 182 ~~~ 184 (354)
+.+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 764
No 112
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.4e-18 Score=140.01 Aligned_cols=92 Identities=25% Similarity=0.355 Sum_probs=81.8
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
+...+..+.++|||+|||+++|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.|++.. +.+
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~-i~g- 116 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDG- 116 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCC-SSS-
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC-
Confidence 334556678999999999999999999999999999999999999999999999999999999999999998877 555
Q ss_pred Cccceeecccccccc
Q 018554 86 SSPLQVKYADGELER 100 (354)
Q Consensus 86 ~~~l~v~~~~~~~~~ 100 (354)
+.|+|.+++.+...
T Consensus 117 -~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 117 -RELRVQMARYGRPP 130 (135)
T ss_dssp -SCCEEEECCCCCCC
T ss_pred -EEEEEEECCCCCCC
Confidence 88999998765543
No 113
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=131.76 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=77.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
......++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.||+.. +.+ +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~ 86 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--RK 86 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE-ETT--EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe-eCC--eE
Confidence 345667899999999999999999999999999999999999999999999999999999999999998876 555 78
Q ss_pred ceeeccccc
Q 018554 89 LQVKYADGE 97 (354)
Q Consensus 89 l~v~~~~~~ 97 (354)
|+|.++...
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 888887643
No 114
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=131.97 Aligned_cols=85 Identities=15% Similarity=0.303 Sum_probs=71.7
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~-~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
.......++|||+|||+++++++|+++|++|| |.+|+|++|+ .+|+++|||||+|.+.++|++|+ .+++.. +.+
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~-~~g-- 87 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN-- 87 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC-BTT--
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE-ECC--
Confidence 34566789999999999999999999999999 9999999998 68999999999999999999999 898866 555
Q ss_pred ccceeeccccc
Q 018554 87 SPLQVKYADGE 97 (354)
Q Consensus 87 ~~l~v~~~~~~ 97 (354)
+.|+|.+++.+
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 78888887754
No 115
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=1.6e-18 Score=130.92 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||+++++++|+++|++||.|.++.+++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--r~l 87 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--RKV 87 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCe-ECC--cEE
Confidence 34457999999999999999999999999999999999999999999999999999999999999998876 555 788
Q ss_pred eeeccc
Q 018554 90 QVKYAD 95 (354)
Q Consensus 90 ~v~~~~ 95 (354)
+|.++.
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 888764
No 116
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.3e-18 Score=128.82 Aligned_cols=84 Identities=21% Similarity=0.217 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~----~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
...+.++|||+|||+++++++|+ ++|++||+|.+|+|++|+.+ +|||||+|.+.++|++|++.||+.. +.+
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~-~~g- 79 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYK-IGS- 79 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEE-ETT-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCE-ECC-
Confidence 44567899999999999999999 99999999999999999875 8899999999999999999998866 555
Q ss_pred Cccceeeccccccc
Q 018554 86 SSPLQVKYADGELE 99 (354)
Q Consensus 86 ~~~l~v~~~~~~~~ 99 (354)
+.|+|.+++....
T Consensus 80 -r~l~V~~a~~~~~ 92 (96)
T 2dgx_A 80 -KKILVSLATGASG 92 (96)
T ss_dssp -EEEEEEECCCSSC
T ss_pred -eEEEEEEcCCCCC
Confidence 8899999876543
No 117
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=126.35 Aligned_cols=81 Identities=22% Similarity=0.388 Sum_probs=74.7
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||+.++++++|+++|++||.|++|+|+++.++.++|||||+|++.++|.+|++.||+.. ++| +.|+|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~ 90 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIR-LYG--RPINVS 90 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCE-ECC--CEEEEE
Confidence 34689999999999999999999999999999999999889999999999999999999999999987 565 789999
Q ss_pred ecCC
Q 018554 180 WADT 183 (354)
Q Consensus 180 ~a~~ 183 (354)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 118
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=1.1e-18 Score=130.48 Aligned_cols=81 Identities=23% Similarity=0.392 Sum_probs=71.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
++|||+|||.++++++|+++|++||+|.+|.+++|+.+++++|||||+|.+.+ |.+|++.||+.. +.| +.|+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~-~~g--~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD-FMG--RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC-CSS--SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE-ECC--eEEEEEEc
Confidence 68999999999999999999999999999999999999999999999999999 999999998866 555 88899888
Q ss_pred ccccc
Q 018554 95 DGELE 99 (354)
Q Consensus 95 ~~~~~ 99 (354)
.....
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 76543
No 119
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=129.78 Aligned_cols=89 Identities=27% Similarity=0.536 Sum_probs=79.2
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
+...++|||+||+.++++++|+++|++||.|.++.++++ .++.++|||||+|.+.++|.+|++.|||.. ++| +.|+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 81 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE-FSG--RALR 81 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBS-CSS--SCBE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-eCC--cEEE
Confidence 334689999999999999999999999999999999998 478899999999999999999999999976 566 6899
Q ss_pred EEecCChHHHHHH
Q 018554 178 VKWADTEKERQAR 190 (354)
Q Consensus 178 v~~a~~~~~~~~~ 190 (354)
|+|++.+..+...
T Consensus 82 v~~a~~~~~~~~~ 94 (104)
T 1p1t_A 82 VDNAASEKNKEEL 94 (104)
T ss_dssp EEETTCTTHHHHH
T ss_pred EEeCCCccchhhh
Confidence 9999987666543
No 120
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=129.86 Aligned_cols=86 Identities=15% Similarity=0.364 Sum_probs=75.4
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.++|||+|||.++++++|+++|++||.|.+|+|..+ ++++|||||+|.+.++|++||+.||+.. +.+ +
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 89 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYD-YDG--Y 89 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCE-ECC--e
Confidence 345667899999999999999999999999999999999665 4689999999999999999999998876 555 8
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.+++.+..
T Consensus 90 ~l~V~~a~~~~~ 101 (109)
T 1x4a_A 90 RLRVEFPRSGRG 101 (109)
T ss_dssp ECEEECCCCCCC
T ss_pred EEEEEEcccCCC
Confidence 899999876544
No 121
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=7e-18 Score=133.87 Aligned_cols=86 Identities=22% Similarity=0.373 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||.++++++|+++|++||.|.+|+|++|+ +++++|||||+|.+.++|++|++.|++.. +.+ +.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEE-SSS--CEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCE-ECC--cEE
Confidence 45677899999999999999999999999999999999999 89999999999999999999999998865 555 789
Q ss_pred eeeccccccc
Q 018554 90 QVKYADGELE 99 (354)
Q Consensus 90 ~v~~~~~~~~ 99 (354)
+|.++.....
T Consensus 107 ~V~~a~~~~~ 116 (124)
T 2kt5_A 107 DIQLVASQID 116 (124)
T ss_dssp EEEEECCTTC
T ss_pred EEEEeCCCCC
Confidence 9998876543
No 122
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-18 Score=136.07 Aligned_cols=86 Identities=27% Similarity=0.406 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
+....++|||+|||+++++++|+++|++||.|.+|.|++|+.|++++|||||+|.+.++|++||+. ++.. +.+ +.|
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~~l 98 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS-IDG--RVV 98 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE-ETT--EEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE-ECC--EEE
Confidence 345569999999999999999999999999999999999999999999999999999999999988 6544 555 889
Q ss_pred eeeccccccc
Q 018554 90 QVKYADGELE 99 (354)
Q Consensus 90 ~v~~~~~~~~ 99 (354)
+|.++..+..
T Consensus 99 ~V~~a~~~~~ 108 (116)
T 1x4b_A 99 EPKRAVAREE 108 (116)
T ss_dssp EEECCSSCCC
T ss_pred EEEECCCCcc
Confidence 9999876654
No 123
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2.6e-18 Score=128.40 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=68.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCC--CeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G--~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
.+|||+||++++|+++|+++|++|| .|.+++|++| .++.++|||||+|.+.++|++|++.|||.. ++| +.|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~-~~g--r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHG--QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC-SSS--CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe-eCC--EEEEEE
Confidence 4799999999999999999999999 9999999999 489999999999999999999999999987 666 688999
Q ss_pred ecCChHH
Q 018554 180 WADTEKE 186 (354)
Q Consensus 180 ~a~~~~~ 186 (354)
++.+...
T Consensus 79 ~~~~~~~ 85 (90)
T 3p5t_L 79 PSNKLEH 85 (90)
T ss_dssp CC-----
T ss_pred ECCCCcc
Confidence 8876543
No 124
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=6.2e-18 Score=139.99 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||+++++++|+++|++||.|.+|.|++|+.+|+++|||||+|.+.++|++|++.||+.. +.+ +.|
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 142 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDG--REL 142 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE-SSS--SEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--eEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999998866 555 889
Q ss_pred eeeccccccc
Q 018554 90 QVKYADGELE 99 (354)
Q Consensus 90 ~v~~~~~~~~ 99 (354)
+|.+++.+..
T Consensus 143 ~v~~a~~~~~ 152 (158)
T 2kn4_A 143 RVQMARYGRP 152 (158)
T ss_dssp EEEEECCSSC
T ss_pred EEEECCCCCC
Confidence 9999876544
No 125
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=130.82 Aligned_cols=88 Identities=14% Similarity=0.295 Sum_probs=73.9
Q ss_pred ccccccCCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-cc
Q 018554 4 SKKEKKSSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KT 81 (354)
Q Consensus 4 ~~~~~~~~~~~~~lfVg~Lp~~-~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~-~~ 81 (354)
.++.+.+....++|||+|||++ +++++|+++|++||.|.+|+|++ +||||||+|.+.++|++|++.|++. ..
T Consensus 15 ~k~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~ 88 (112)
T 1x4f_A 15 DQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALW 88 (112)
T ss_dssp CCCCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCC
T ss_pred hhhccccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCce
Confidence 3444556778999999999998 99999999999999999999975 4689999999999999999998753 33
Q ss_pred CCCCCccceeeccccccc
Q 018554 82 LPGASSPLQVKYADGELE 99 (354)
Q Consensus 82 ~~g~~~~l~v~~~~~~~~ 99 (354)
+.| +.|+|.+++.+..
T Consensus 89 l~G--r~l~V~~a~~~~~ 104 (112)
T 1x4f_A 89 FQG--RCVKVDLSEKYKK 104 (112)
T ss_dssp SSS--SCCEEEEECSCSS
T ss_pred ECC--EEEEEEECccccc
Confidence 555 8899999876543
No 126
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.3e-18 Score=129.21 Aligned_cols=85 Identities=15% Similarity=0.253 Sum_probs=73.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE-VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~-i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
..+....++|||+|||+++++++|+++|+.||.|.+ |.|++| .+++++|||||+|.+.++|++||+. ++.. +.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~-~~g-- 83 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKER-IGH-- 83 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCC-SSS--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccch-hCC--
Confidence 445677899999999999999999999999999988 888888 6899999999999999999999997 6644 555
Q ss_pred ccceeeccccc
Q 018554 87 SPLQVKYADGE 97 (354)
Q Consensus 87 ~~l~v~~~~~~ 97 (354)
+.|+|.++..+
T Consensus 84 r~i~v~~~~~~ 94 (104)
T 1wg5_A 84 RYIEIFKSSRA 94 (104)
T ss_dssp SCCEEEEECTT
T ss_pred cEEEEEECCHH
Confidence 67777766543
No 127
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8e-18 Score=125.97 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=75.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.......++|||+|||+++++++|+++|+.| .|.+|+|++| .+|+++|||||+|.+.++|++|++ +|+.. +.+ +
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~-~~g--r 77 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREY-MGG--R 77 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEE-ETT--E
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCce-eCC--c
Confidence 3456788999999999999999999999999 9999999999 679999999999999999999999 98766 555 7
Q ss_pred cceeecccccc
Q 018554 88 PLQVKYADGEL 98 (354)
Q Consensus 88 ~l~v~~~~~~~ 98 (354)
.|+|.+++.+.
T Consensus 78 ~i~v~~a~~~~ 88 (91)
T 2dgw_A 78 YIEVFREKSGP 88 (91)
T ss_dssp EEEEEEESSCC
T ss_pred EEEEEECCcCC
Confidence 88888877653
No 128
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=4.3e-18 Score=149.42 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=76.5
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCC--CeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G--~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
..++|||+||++++|+++|+++|++|| .|++|+|++| .++++||||||+|++.++|++||+.||+.. |+| +.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~-~~G--r~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHG--QNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC-BTT--BCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe-ECC--EEeE
Confidence 357899999999999999999999999 9999999999 489999999999999999999999999987 666 6899
Q ss_pred EEecCChHHHHH
Q 018554 178 VKWADTEKERQA 189 (354)
Q Consensus 178 v~~a~~~~~~~~ 189 (354)
|+||+.......
T Consensus 144 V~~a~~~~~~~~ 155 (229)
T 3q2s_C 144 VTPVNKQFLSQF 155 (229)
T ss_dssp EEECCHHHHHHH
T ss_pred EEECCCCccchh
Confidence 999987655443
No 129
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8e-18 Score=128.00 Aligned_cols=82 Identities=29% Similarity=0.441 Sum_probs=75.3
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||++++|+++|+++|++||.|++|+|+++. ++.++|||||+|.+.++|.+|++.||+.. ++| +.|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~ 83 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV-FQG--RMLHVL 83 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE-SSS--CEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEE
Confidence 36799999999999999999999999999999999996 88999999999999999999999999976 665 689999
Q ss_pred ecCChH
Q 018554 180 WADTEK 185 (354)
Q Consensus 180 ~a~~~~ 185 (354)
|++.+.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 998763
No 130
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=127.23 Aligned_cols=81 Identities=25% Similarity=0.439 Sum_probs=74.7
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+||++++|+++|+++|++||.|++|+|+.+ ++.+++||||+|.+.++|.+|++.||+.. ++| +.|.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V~~ 89 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRI-VAT--KPLYVAL 89 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCB-SSS--SBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCE-eCC--cEEEEEE
Confidence 4689999999999999999999999999999999999 88999999999999999999999999987 565 6899999
Q ss_pred cCChH
Q 018554 181 ADTEK 185 (354)
Q Consensus 181 a~~~~ 185 (354)
++.+.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 97653
No 131
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-18 Score=131.09 Aligned_cols=87 Identities=25% Similarity=0.445 Sum_probs=76.7
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
....+..+.++|||+|||.++++++|+++|++||+|.+|++++|+ ++++|||||+|.+.++|++|++.|++.. +.|
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~-~~g- 96 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV-VEG- 96 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCE-ETT-
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCE-ECC-
Confidence 344566788999999999999999999999999999999999986 4589999999999999999999998876 555
Q ss_pred Cccceeeccccc
Q 018554 86 SSPLQVKYADGE 97 (354)
Q Consensus 86 ~~~l~v~~~~~~ 97 (354)
+.|+|.+++.+
T Consensus 97 -~~l~V~~a~~~ 107 (109)
T 2err_A 97 -RKIEVNNATAR 107 (109)
T ss_dssp -EECEEEECCCS
T ss_pred -EEEEEEECCCC
Confidence 88999988764
No 132
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-18 Score=135.02 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=75.1
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALV-DEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v-~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
....+.++|||+|||+++|+++|+++|+.||.| .+|+|++|+ +++++|||||+|.+.++|++||+. |+.. +.+ +
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~-~~g--r 84 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKK-LNG--R 84 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEE-ETT--E
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCc-cCC--e
Confidence 456678999999999999999999999999999 899999999 899999999999999999999987 6644 655 7
Q ss_pred cceeecccccc
Q 018554 88 PLQVKYADGEL 98 (354)
Q Consensus 88 ~l~v~~~~~~~ 98 (354)
.|.|.++..+.
T Consensus 85 ~i~v~~a~~~~ 95 (114)
T 2cpy_A 85 EAFVHVVTLED 95 (114)
T ss_dssp EEEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 88888876543
No 133
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=124.94 Aligned_cols=80 Identities=29% Similarity=0.543 Sum_probs=73.6
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+||+.++++++|+++|++||.|++|+++++. ++.++|||||+|++.++|.+|++.||+.. ++| +.|+|+|
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~ 81 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE-LAG--RPMRVGH 81 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC-SSS--SCCEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe-eCC--cEEEEEE
Confidence 5789999999999999999999999999999999984 68999999999999999999999999976 666 6899999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
++.+
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8764
No 134
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=4.8e-18 Score=149.14 Aligned_cols=82 Identities=17% Similarity=0.314 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G--~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
+.++|||+||++++||++|+++|++|| +|++|+|++|+.|+++||||||+|.+.++|++||+.||+.. +.+ +.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~-~~G--r~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHG--QNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC-BTT--BCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe-ECC--EEeE
Confidence 678999999999999999999999999 99999999999999999999999999999999999998876 555 7888
Q ss_pred eeccccc
Q 018554 91 VKYADGE 97 (354)
Q Consensus 91 v~~~~~~ 97 (354)
|.+++..
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 8887654
No 135
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=126.31 Aligned_cols=85 Identities=18% Similarity=0.274 Sum_probs=71.8
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc-CCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT-LPG 84 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~-~~g 84 (354)
++.....++++|||+|||.++|+++|+++|++||.|.+|++++ .||||||+|++.++|.+|++.+++..+ +.|
T Consensus 13 ~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 13 DDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp ----CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 4556677899999999999999999999999999999999986 357999999999999999999987652 444
Q ss_pred CCccceeecccccc
Q 018554 85 ASSPLQVKYADGEL 98 (354)
Q Consensus 85 ~~~~l~v~~~~~~~ 98 (354)
+.|+|.|++.+.
T Consensus 87 --r~i~V~~S~~k~ 98 (100)
T 3r27_A 87 --HPAFVNYSTSQK 98 (100)
T ss_dssp --EEEEEEECSCSC
T ss_pred --cEEEEEeccccc
Confidence 899999987653
No 136
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=126.99 Aligned_cols=82 Identities=23% Similarity=0.470 Sum_probs=75.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||+.++++++|+++|++||.|++|.|+++ .++.++|||||+|.+.++|.+|++.||+.. ++| +.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v 89 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDH--LILNV 89 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE-ETT--EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe-eCC--cEEEE
Confidence 34689999999999999999999999999999999999 488999999999999999999999999987 565 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
+|++.+
T Consensus 90 ~~a~~~ 95 (103)
T 2cq0_A 90 EWAKPS 95 (103)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 999765
No 137
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.4e-18 Score=129.75 Aligned_cols=78 Identities=26% Similarity=0.457 Sum_probs=69.4
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-cccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~~g~~~~l~v~ 179 (354)
..++|||+||++++|+++|+++|++||+|++|+|+++ ||||||+|++.++|.+|++.|++. ..++| +.|.|.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G--r~l~V~ 87 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QPIYIQ 87 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETT--EECCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--EEEEEE
Confidence 3679999999999999999999999999999999986 899999999999999999998753 33666 789999
Q ss_pred ecCChH
Q 018554 180 WADTEK 185 (354)
Q Consensus 180 ~a~~~~ 185 (354)
||+.+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 997653
No 138
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.3e-17 Score=123.02 Aligned_cols=79 Identities=29% Similarity=0.499 Sum_probs=72.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||+.++++++|+++|++||.|.++.++++ .++.++|||||+|.+.++|.+|++.|||.. ++| +.|+|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~ 82 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--RTIRVN 82 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEE
Confidence 4689999999999999999999999999999999988 688899999999999999999999999987 565 789999
Q ss_pred ecC
Q 018554 180 WAD 182 (354)
Q Consensus 180 ~a~ 182 (354)
||+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 139
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=124.12 Aligned_cols=81 Identities=27% Similarity=0.378 Sum_probs=74.0
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||+.++++++|+++|++||.|++|.++++. ++.++|||||+|.+.++|.+|++.||+.. ++| +.|+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v 89 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDG--RRIRV 89 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETT--EEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEE
Confidence 346889999999999999999999999999999999984 68899999999999999999999999976 565 78999
Q ss_pred EecCC
Q 018554 179 KWADT 183 (354)
Q Consensus 179 ~~a~~ 183 (354)
+|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 140
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=8e-18 Score=136.30 Aligned_cols=84 Identities=25% Similarity=0.389 Sum_probs=75.4
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.++|||+|||.++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 133 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--R 133 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE-ETT--E
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE-ECC--E
Confidence 3456688999999999999999999999999999999999999999999999999999999999999998865 555 7
Q ss_pred cceeecc
Q 018554 88 PLQVKYA 94 (354)
Q Consensus 88 ~l~v~~~ 94 (354)
.|+|.++
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 7887764
No 141
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=2.5e-17 Score=128.80 Aligned_cols=82 Identities=23% Similarity=0.520 Sum_probs=75.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||++++|+++|+++|+.||.|++|+|+++ .++.++|||||+|.+.++|++|++.||+.. ++| +.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V 89 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG--RQIRT 89 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE-ETT--EECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEE
Confidence 34689999999999999999999999999999999999 489999999999999999999999999977 666 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
.|++.+
T Consensus 90 ~~a~~~ 95 (115)
T 2dgo_A 90 NWATRK 95 (115)
T ss_dssp EESSCC
T ss_pred EEccCC
Confidence 999765
No 142
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-18 Score=136.63 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=74.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
....+.++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++||+ +|+.. +.+ +.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r~ 95 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY-MGN--RF 95 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC-STT--SC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe-ECC--cE
Confidence 345677999999999999999999999999999997777777889999999999999999999999 87755 655 78
Q ss_pred ceeeccccc
Q 018554 89 LQVKYADGE 97 (354)
Q Consensus 89 l~v~~~~~~ 97 (354)
|.|.++..+
T Consensus 96 i~V~~a~~~ 104 (124)
T 1wel_A 96 IQVHPITKK 104 (124)
T ss_dssp BEEEEECHH
T ss_pred EEEEECCHH
Confidence 888877654
No 143
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1.8e-17 Score=125.33 Aligned_cols=83 Identities=20% Similarity=0.403 Sum_probs=75.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
+++|||+||+.++++++|+++|++||.|.+|+|+++ .++.++|||||+|.+.++|.+|++.|||.. ++| +.|+|+|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ-LGS--RFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEEE
Confidence 478999999999999999999999999999999998 478999999999999999999999999977 666 7899999
Q ss_pred cCChHHH
Q 018554 181 ADTEKER 187 (354)
Q Consensus 181 a~~~~~~ 187 (354)
++.+...
T Consensus 79 a~~~~~~ 85 (96)
T 2x1f_A 79 SSNSDIS 85 (96)
T ss_dssp CSCSSGG
T ss_pred cCCCCCC
Confidence 9876543
No 144
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=2.3e-18 Score=136.64 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..+.++|||+|||.++++++|+++|++||.|.+|.|++|+.+++++|||||+|.+.++|++|+ .||+.. +.+ +.|+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~ 108 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV-FRG--RTIK 108 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE-ETT--EECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe-ECC--eEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999 788866 555 8899
Q ss_pred eeccccccc
Q 018554 91 VKYADGELE 99 (354)
Q Consensus 91 v~~~~~~~~ 99 (354)
|.+++....
T Consensus 109 V~~a~~~~~ 117 (124)
T 2jwn_A 109 VLPKRTNMP 117 (124)
T ss_dssp EEESSCCCS
T ss_pred EEECCCCCC
Confidence 998875443
No 145
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.3e-18 Score=131.90 Aligned_cols=87 Identities=15% Similarity=0.289 Sum_probs=77.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLL---AMFKEFALVDEVNIIKDKTTR---ASRGCCFVICPSRQEADKAVNACHNKKTL 82 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~---~~F~~~G~v~~i~i~~d~~tg---~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~ 82 (354)
......++|||+|||+++++++|+ ++|++||+|.+|.|++|+.++ +++|||||+|.+.++|++||+.||+.. +
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~-~ 88 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV-V 88 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE-E
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE-E
Confidence 355678899999999999999999 999999999999999998754 566999999999999999999998876 5
Q ss_pred CCCCccceeecccccc
Q 018554 83 PGASSPLQVKYADGEL 98 (354)
Q Consensus 83 ~g~~~~l~v~~~~~~~ 98 (354)
.+ +.|+|.++..+.
T Consensus 89 ~g--r~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DG--RTLKASLGTTKY 102 (111)
T ss_dssp TT--EEEEEESCCCCS
T ss_pred CC--EEEEEEeccccc
Confidence 55 889999987654
No 146
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=1.6e-17 Score=129.94 Aligned_cols=82 Identities=22% Similarity=0.382 Sum_probs=75.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||+.++++++|+++|++||.|++|+|+++. ++.++|||||+|.+.++|++|++.||+.. ++| +.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V 99 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ-IGM--KRLKV 99 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEE
Confidence 346899999999999999999999999999999999995 89999999999999999999999999977 565 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
+|++.+
T Consensus 100 ~~a~~~ 105 (115)
T 2cpz_A 100 QLKRSK 105 (115)
T ss_dssp ECCCCS
T ss_pred EEcCCC
Confidence 999765
No 147
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=125.51 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=71.1
Q ss_pred cccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc-cCCCce
Q 018554 96 GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK-MEGSSV 174 (354)
Q Consensus 96 ~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~~g~~~ 174 (354)
......+++|||+||++++|+++|+++|++||.|++++++++ ||+|||+|++.++|.+|++.|++..+ +.| +
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~G--r 87 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAG--H 87 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETT--E
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCC--c
Confidence 334445789999999999999999999999999999999864 89999999999999999999998752 455 7
Q ss_pred eEEEEecCCh
Q 018554 175 PLVVKWADTE 184 (354)
Q Consensus 175 ~l~v~~a~~~ 184 (354)
+|.|.|++.+
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999999764
No 148
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=128.87 Aligned_cols=84 Identities=18% Similarity=0.275 Sum_probs=72.3
Q ss_pred cccCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-cCCC
Q 018554 7 EKKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK-TLPG 84 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~-~~~g 84 (354)
++....+.++|||+|||+ ++||+||+++|++||.|.+|+|++++ |||||+|++.++|++||+.|++.. .+.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 344566889999999999 99999999999999999999998764 699999999999999999998643 3555
Q ss_pred CCccceeecccccc
Q 018554 85 ASSPLQVKYADGEL 98 (354)
Q Consensus 85 ~~~~l~v~~~~~~~ 98 (354)
+.|+|.+++...
T Consensus 82 --r~l~V~~a~~~~ 93 (102)
T 1x4d_A 82 --KPVRVHLSQKYK 93 (102)
T ss_dssp --EECEEEEECCCT
T ss_pred --cEEEEEECCCCC
Confidence 889999987543
No 149
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=127.35 Aligned_cols=89 Identities=25% Similarity=0.346 Sum_probs=77.9
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 5 ~~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
..........++|||+|||.++++++|+++|+.|+ +|.+++|+.+++++|||||+|.+.++|++||+.||+.. +.+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 81 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE-IDG 81 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe-ECC
Confidence 34456678899999999999999999999999773 78889999999999999999999999999999998876 555
Q ss_pred CCccceeeccccccc
Q 018554 85 ASSPLQVKYADGELE 99 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 82 --~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 82 --NKVTLDWAKPKGE 94 (102)
T ss_dssp --EECEEEECCCCCS
T ss_pred --eEEEEEEecCCCC
Confidence 7899999887654
No 150
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=127.86 Aligned_cols=80 Identities=18% Similarity=0.352 Sum_probs=72.1
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+|||+++|+++|+++|++||.|.+|.|+++..+.++|||||+|++.++|.+|++ +++.. ++| +.|.|.|
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~-~~g--r~l~V~~ 85 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQK-YKE--TDLLILF 85 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCC-CTT--TTCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCE-ECC--EEEEEEE
Confidence 3578999999999999999999999999999999999779999999999999999999998 88865 677 5788888
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
+..-
T Consensus 86 ~~~~ 89 (103)
T 1s79_A 86 KDDY 89 (103)
T ss_dssp HHHH
T ss_pred chHH
Confidence 7543
No 151
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-18 Score=132.17 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||+++++++|+++|++||.|.+ .++.|+.+++++|||||+|.+.++|++||+ ||+.. +.+ +.|
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~-~~g--~~l 87 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK-VFG--NEI 87 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCC-BTT--BCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcE-ECC--cEE
Confidence 4557889999999999999999999999999888 778888889999999999999999999998 98876 445 889
Q ss_pred eeecccccccc
Q 018554 90 QVKYADGELER 100 (354)
Q Consensus 90 ~v~~~~~~~~~ 100 (354)
+|.+++.+..+
T Consensus 88 ~V~~a~~~~~~ 98 (101)
T 1fj7_A 88 KLEKPKGRDGT 98 (101)
T ss_dssp EEECCSCCCCS
T ss_pred EEEEcCCCCCC
Confidence 99998876554
No 152
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.9e-18 Score=128.49 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=70.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
......++|||+|||+++||+||+++|++||.| +|+|++|+ +++++|||||+|.+.++|++||+ +|+.. +.+ +.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~g--r~ 83 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKAN-MQH--RY 83 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCC-SSS--SC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCe-ECC--cE
Confidence 456678999999999999999999999999955 99999998 79999999999999999999995 66644 655 67
Q ss_pred ceeecccc
Q 018554 89 LQVKYADG 96 (354)
Q Consensus 89 l~v~~~~~ 96 (354)
|+|.++..
T Consensus 84 i~V~~~~~ 91 (102)
T 1wez_A 84 VELFLNST 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 77776654
No 153
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=128.05 Aligned_cols=82 Identities=24% Similarity=0.411 Sum_probs=75.2
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||++++++++|+++|++||.|++|+|+++.++.++|||||+|++.++|++|++.||+.. ++| +.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~ 89 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQL-LFD--RPMHVK 89 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCE-eCC--CEEEEE
Confidence 34689999999999999999999999999999999999889999999999999999999999999987 555 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98753
No 154
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=130.21 Aligned_cols=80 Identities=30% Similarity=0.517 Sum_probs=74.5
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.++|||+||+.++|+++|+++|++||.|++|.|+.+.++.++|||||+|++.++|++|++.|||.. ++| +.|+|+|+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-~~g--~~l~V~~a 83 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKS-LHG--KAIKVEQA 83 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCB-CSS--SBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEEEEC
Confidence 579999999999999999999999999999999999889999999999999999999999999987 666 68999998
Q ss_pred CCh
Q 018554 182 DTE 184 (354)
Q Consensus 182 ~~~ 184 (354)
+..
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 155
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=125.44 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=74.1
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
....++|||+||++++|+++|+++|++||.|++|+|+++..+ +++||||+|.+.++|++|++.||+.. ++| +.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v 87 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTV-VEG--RKIEV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEE
Confidence 344689999999999999999999999999999999998655 79999999999999999999999987 565 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
+|++.+
T Consensus 88 ~~a~~~ 93 (103)
T 2cq3_A 88 NNATAR 93 (103)
T ss_dssp EECCSS
T ss_pred EEcccC
Confidence 998765
No 156
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=5e-18 Score=136.44 Aligned_cols=83 Identities=12% Similarity=0.155 Sum_probs=73.4
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~---v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
.+..+.++|||+|||+++|+++|+++|++||. |.+|+|++|+. |+++|||||+|.+.++|++||+ +|+.. +.+
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~-l~g- 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES-MGH- 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE-SSS-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE-ECC-
Confidence 34567899999999999999999999999999 89999999998 9999999999999999999999 87755 555
Q ss_pred Cccceeecccc
Q 018554 86 SSPLQVKYADG 96 (354)
Q Consensus 86 ~~~l~v~~~~~ 96 (354)
+.|+|.++..
T Consensus 115 -r~i~V~~a~~ 124 (136)
T 2hgl_A 115 -RYIEVFKSHR 124 (136)
T ss_dssp -SEEEEEECCH
T ss_pred -EEEEEEECCh
Confidence 7778776653
No 157
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=131.41 Aligned_cols=85 Identities=12% Similarity=0.269 Sum_probs=73.4
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~----~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
.+..+.++|||+||++++++++|+ ++|++||.|.+|.+.+ ++++||||||+|.+.++|++|++.||+.. +.|
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~-l~g 99 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYP-FQG 99 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCC-CTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCE-eCC
Confidence 345678999999999999999876 6999999999988754 57899999999999999999999999876 555
Q ss_pred CCccceeeccccccc
Q 018554 85 ASSPLQVKYADGELE 99 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~ 99 (354)
+.|+|.|++.+..
T Consensus 100 --r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 --NPLVITFSETPQS 112 (127)
T ss_dssp --SCCEEEECCCCCH
T ss_pred --CEEEEEEccCcch
Confidence 7899999876544
No 158
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=124.64 Aligned_cols=80 Identities=23% Similarity=0.504 Sum_probs=73.0
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||+.++++++|+++|++||.|++|+|+++ .++.++|||||+|++.++|.+|++ ||+.. ++| +.|+|+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~-~~g--~~l~V~ 84 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD-IMG--KKVEVK 84 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB-SSS--CBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE-ECC--eEEEEE
Confidence 4689999999999999999999999999999999998 478899999999999999999998 99976 666 588999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
+++.+
T Consensus 85 ~a~~~ 89 (99)
T 2dgs_A 85 RAEPR 89 (99)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98765
No 159
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=127.33 Aligned_cols=83 Identities=20% Similarity=0.358 Sum_probs=75.6
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||++++|+++|+++|++||.|++|.|+++. ++.++|||||+|.+.++|++|++.||+.. ++| +.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v 89 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK-LYG--KPIRV 89 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB-CSS--CBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEE
Confidence 346899999999999999999999999999999999985 88999999999999999999999999976 666 68999
Q ss_pred EecCChH
Q 018554 179 KWADTEK 185 (354)
Q Consensus 179 ~~a~~~~ 185 (354)
+|++.+.
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9997653
No 160
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=6.3e-18 Score=128.90 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=73.6
Q ss_pred cceEEEecCCC------CCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCce
Q 018554 102 EHKLFIGMLPK------NVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (354)
Q Consensus 102 ~~~l~V~~l~~------~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~ 174 (354)
.++|||+|||. ++++++|+++|++||.|.+|+|+++. ++.++|||||+|.+.++|.+|++.|||.. ++|. +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~-~~g~-r 83 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR-LDLK-H 83 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB-SSSS-C
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc-cCCC-e
Confidence 57899999999 99999999999999999999999985 69999999999999999999999999987 5551 5
Q ss_pred eEEEEecCCh
Q 018554 175 PLVVKWADTE 184 (354)
Q Consensus 175 ~l~v~~a~~~ 184 (354)
.|+|++|++.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 8899999654
No 161
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=3.3e-17 Score=126.39 Aligned_cols=80 Identities=29% Similarity=0.468 Sum_probs=74.2
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||+.++|+++|+++|+.||.|++|+|+++.++.++|||||+|.+.++|++|++.||+.. ++| +.|+|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~ 103 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP-LDG--RPMNIQ 103 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE-eCC--cEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999987 565 789999
Q ss_pred ecC
Q 018554 180 WAD 182 (354)
Q Consensus 180 ~a~ 182 (354)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 162
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=126.33 Aligned_cols=84 Identities=27% Similarity=0.478 Sum_probs=75.6
Q ss_pred cccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeE
Q 018554 98 LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (354)
Q Consensus 98 ~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l 176 (354)
.....++|||+||+.++++++|+++|++||.|++|+|+++ .++.++|||||+|.+.++|.+|++.|||.. ++| +.|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-i~g--~~l 98 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE-LAG--RPM 98 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC-SSS--SCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEE
Confidence 3445789999999999999999999999999999999998 578899999999999999999999999976 666 688
Q ss_pred EEEecCCh
Q 018554 177 VVKWADTE 184 (354)
Q Consensus 177 ~v~~a~~~ 184 (354)
+|++++.+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998764
No 163
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=1.3e-17 Score=134.05 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=73.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCC---eeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGT---IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~---v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l 176 (354)
...++|||+||++++|+++|+++|+.||. |++|+|++|..++++|||||+|++.++|++|++ +|+.. ++| +.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~-l~g--r~i 117 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRES-MGH--RYI 117 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEE-SSS--SEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCE-ECC--EEE
Confidence 34689999999999999999999999999 899999999889999999999999999999999 99976 666 688
Q ss_pred EEEecCCh
Q 018554 177 VVKWADTE 184 (354)
Q Consensus 177 ~v~~a~~~ 184 (354)
+|.++..+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99988644
No 164
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=2.2e-18 Score=165.11 Aligned_cols=80 Identities=23% Similarity=0.485 Sum_probs=73.6
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+||++++|+++|+++|++||.|+.|.|+.+ .++.++|||||+|.+.++|.+||+.|||.. |+| ..|.|.|
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~-i~g--r~i~V~~ 178 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK-IDG--RRVLVDV 178 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE-ECC--EEEEEEE
Confidence 579999999999999999999999999999999998 588999999999999999999999999987 565 7899999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8753
No 165
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=123.98 Aligned_cols=79 Identities=25% Similarity=0.453 Sum_probs=72.6
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||+.++++++|+++|++||.|++|+|+++. ++.++|||||+|++.++|.+|++.||+.. ++| +.|+|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~ 91 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ-LFG--RVIKAS 91 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE-ETT--EEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe-eCC--cEEEEE
Confidence 36799999999999999999999999999999999984 68899999999999999999999999976 565 789999
Q ss_pred ecC
Q 018554 180 WAD 182 (354)
Q Consensus 180 ~a~ 182 (354)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 166
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=126.42 Aligned_cols=81 Identities=28% Similarity=0.523 Sum_probs=73.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||+.++++++|+++|+.||.|++|.|+++. ++.++|||||+|.+.++|.+|++.|||.. ++| +.|.|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~ 98 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--QPISVD 98 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB-SSS--SBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE-ECC--cEEEEE
Confidence 46789999999999999999999999999999999984 68999999999999999999999999976 666 678999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98654
No 167
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4e-17 Score=123.68 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=73.2
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.++|||+|||.++++++|+++|++||.|++|.++++ +|||||+|.+.++|++|++.||+.. +.+..+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~-~~~~g~ 83 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFP-LGGPDR 83 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCB-CSSSSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCE-eCCCCc
Confidence 345567899999999999999999999999999999998764 6799999999999999999998876 552248
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.+++.+..
T Consensus 84 ~l~V~~a~~~~~ 95 (97)
T 1why_A 84 RLRVDFAKSGPS 95 (97)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEECCCCCC
Confidence 899999887643
No 168
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=128.70 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=73.4
Q ss_pred ccCCCCCCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 018554 8 KKSSEERVKLFVGQVPKHM------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~------te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~ 81 (354)
..+....++|||+|||+++ ++++|+++|++||.|.+|.|+ +.+|+++|||||+|.+.++|.+|++.||+..
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~- 85 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYK- 85 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE-
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc-
Confidence 3445567899999999999 789999999999999999988 4679999999999999999999999998866
Q ss_pred CCCCCc-cceeecccc
Q 018554 82 LPGASS-PLQVKYADG 96 (354)
Q Consensus 82 ~~g~~~-~l~v~~~~~ 96 (354)
+.| + .|+|.++..
T Consensus 86 ~~g--~~~l~V~~a~~ 99 (105)
T 2nlw_A 86 LDK--QHTFRVNLFTD 99 (105)
T ss_dssp CST--TCEEEEECSCC
T ss_pred cCC--CceEEEEEcch
Confidence 555 6 889988764
No 169
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=124.34 Aligned_cols=79 Identities=27% Similarity=0.433 Sum_probs=72.5
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeE--------EEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCC
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD--------LQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~--------i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 171 (354)
..++|||+||+.++++++|+++|++||.|.+ ++|+++ .++.++|||||+|.+.++|++|++.|||.. ++|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~-~~g 90 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE-FSG 90 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB-SSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE-eCC
Confidence 3689999999999999999999999999999 999998 578999999999999999999999999986 666
Q ss_pred CceeEEEEecC
Q 018554 172 SSVPLVVKWAD 182 (354)
Q Consensus 172 ~~~~l~v~~a~ 182 (354)
+.|+|++|+
T Consensus 91 --~~l~V~~A~ 99 (99)
T 2la6_A 91 --NPIKVSFAT 99 (99)
T ss_dssp --SBCEEEECC
T ss_pred --cEEEEEecC
Confidence 678888874
No 170
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=127.29 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=74.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhcc-CCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSI-YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~-~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||++++|+++|+++|+. ||.|++|+|+++.++.++|||||+|.+.++|.+|++.||+...++| +.|.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g--~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS--KPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS--SCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC--EeEEEE
Confidence 4689999999999999999999999 9999999999999999999999999999999999999999763566 578999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 88655
No 171
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=6.6e-18 Score=132.83 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=73.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~---v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
....+.++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ +|+.. +.+
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g- 87 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES-MGH- 87 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE-ETT-
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe-ECC-
Confidence 34567899999999999999999999999999 89999999987 9999999999999999999999 87754 555
Q ss_pred Cccceeecccc
Q 018554 86 SSPLQVKYADG 96 (354)
Q Consensus 86 ~~~l~v~~~~~ 96 (354)
+.|+|.++..
T Consensus 88 -r~i~V~~a~~ 97 (118)
T 2db1_A 88 -RYIEVFKSHR 97 (118)
T ss_dssp -EEEEEEEECH
T ss_pred -eEEEEEECCH
Confidence 7777776643
No 172
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=126.66 Aligned_cols=83 Identities=28% Similarity=0.590 Sum_probs=74.9
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHh-CCCcccCCCcee
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAI-NGKHKMEGSSVP 175 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~--~~~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~~g~~~~ 175 (354)
....++|||+||+.++|+++|+++|++||.|++|+|+++. ++.++|||||+|.+.++|.+|++.| |+.. ++| +.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~~g--~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH-LYG--RR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB-SSS--CB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe-ECC--CE
Confidence 3446899999999999999999999999999999999984 7889999999999999999999999 8876 666 68
Q ss_pred EEEEecCCh
Q 018554 176 LVVKWADTE 184 (354)
Q Consensus 176 l~v~~a~~~ 184 (354)
|+|+|++.+
T Consensus 89 l~v~~a~~~ 97 (107)
T 2cph_A 89 LVLEWADSE 97 (107)
T ss_dssp CEEEECCCC
T ss_pred EEEEeCCCC
Confidence 999999765
No 173
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=122.17 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=64.3
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 14 RVKLFVGQVPKHM------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 14 ~~~lfVg~Lp~~~------te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
+++|||+|||.++ ++++|+++|++||.|.+|.+. +.+|+++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~g--~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYK-LDK--Q 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCC-CSS--S
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcc-cCC--c
Confidence 4799999999999 789999999999999999987 4578999999999999999999999998877 444 4
Q ss_pred -ccee
Q 018554 88 -PLQV 91 (354)
Q Consensus 88 -~l~v 91 (354)
.|+|
T Consensus 76 ~~l~V 80 (81)
T 2krb_A 76 HTFRV 80 (81)
T ss_dssp SCCCC
T ss_pred eeEEe
Confidence 4544
No 174
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=6.7e-18 Score=130.41 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=74.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~---v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
..+..+.++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ +|+.. +.+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~g 81 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY-MGQ 81 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC-SSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce-eCC
Confidence 445678899999999999999999999999998 89999999998 9999999999999999999999 87754 555
Q ss_pred CCccceeeccccc
Q 018554 85 ASSPLQVKYADGE 97 (354)
Q Consensus 85 ~~~~l~v~~~~~~ 97 (354)
+.|+|.++..+
T Consensus 82 --r~i~V~~a~~~ 92 (107)
T 2lmi_A 82 --RYVEVYEINNE 92 (107)
T ss_dssp --SCCCCEECCHH
T ss_pred --eEEEEEECCHH
Confidence 67788776543
No 175
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5e-17 Score=126.89 Aligned_cols=84 Identities=29% Similarity=0.529 Sum_probs=75.6
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCC------Cc
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG------SS 173 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g------~~ 173 (354)
...++|||+||+.++|+++|+++|+.||.|++|+|+++.++.++|||||+|.+.++|.+|++.|||.. +++ ..
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF-IKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC-CCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE-EcCCccccCCC
Confidence 34689999999999999999999999999999999999989999999999999999999999999987 532 23
Q ss_pred eeEEEEecCCh
Q 018554 174 VPLVVKWADTE 184 (354)
Q Consensus 174 ~~l~v~~a~~~ 184 (354)
+.|.|+|+++.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 68999999753
No 176
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=121.16 Aligned_cols=80 Identities=29% Similarity=0.513 Sum_probs=71.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
....+.++|||+|||.++++++|+++|++||.|.+|.++ +|||||+|.+.++|++|++.||+.. +.+ +.
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~ 71 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYK-LHG--VN 71 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCB-CSS--CB
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCc-cCC--cE
Confidence 456788999999999999999999999999999999987 5799999999999999999998866 555 88
Q ss_pred ceeeccccccc
Q 018554 89 LQVKYADGELE 99 (354)
Q Consensus 89 l~v~~~~~~~~ 99 (354)
|+|.+++.+..
T Consensus 72 l~v~~a~~~~~ 82 (90)
T 2dnq_A 72 INVEASKNKSK 82 (90)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999876654
No 177
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=6.5e-18 Score=121.64 Aligned_cols=75 Identities=24% Similarity=0.439 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
+|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|++|++. ++.. +.| +.++|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN-VGL--SKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC-BTT--BCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe-ECC--EEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999985 4544 655 66666653
No 178
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=125.08 Aligned_cols=82 Identities=28% Similarity=0.505 Sum_probs=73.8
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||++++++++|+++|++||.|++|+|+++... ++|||||+|.+.++|.+|++.||+.. ++| +.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~ 88 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRK-ILG--KEVKVN 88 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEE-ETT--EEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCC-cCC--CeEEEE
Confidence 34689999999999999999999999999999999998544 68999999999999999999999977 565 789999
Q ss_pred ecCChH
Q 018554 180 WADTEK 185 (354)
Q Consensus 180 ~a~~~~ 185 (354)
|++...
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998753
No 179
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=124.82 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=74.5
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCee-EEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc--eeE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIK-DLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS--VPL 176 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~-~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~--~~l 176 (354)
..++|||+||+.++++++|+++|++||.|. +|+|++++ ++.++|||||+|.+.++|++|++.|||.. ++|+. ++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP-LPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE-ESSCSSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc-cCCCCcceeE
Confidence 468999999999999999999999999999 99999995 88999999999999999999999999976 66654 238
Q ss_pred EEEecCCh
Q 018554 177 VVKWADTE 184 (354)
Q Consensus 177 ~v~~a~~~ 184 (354)
+|.||+..
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998754
No 180
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=2.9e-17 Score=136.99 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...+.++|||+|||+++++++|+++|++||.|..|.|++++.||+++|||||+|.+.++|.+||+.||+.. +.+ +.|
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l 144 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMG--QTI 144 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCE-ECC--EEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999998866 555 888
Q ss_pred eeeccccccc
Q 018554 90 QVKYADGELE 99 (354)
Q Consensus 90 ~v~~~~~~~~ 99 (354)
.|.|+..+..
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9998865543
No 181
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=127.10 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=74.3
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||++++++++|+++|++||.|++|.|+++. ++.++|||||+|.+.++|++|++.||+.. ++| +.|.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V~ 88 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE-LDG--RELRVQ 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC-BTT--BCCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE-ECC--cEEEEE
Confidence 46899999999999999999999999999999999984 68899999999999999999999999977 666 689999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++..
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 98764
No 182
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.8e-17 Score=119.81 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=67.3
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
+..|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.++++|.+|++.||+.. ++| +.|+|++|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~-l~g--r~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCV-LAN--TTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEE-ETT--EEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCE-ECC--cEEEEEEC
Confidence 46799999999999999999999999999999986 49999999999999999999999976 666 78999999
Q ss_pred C
Q 018554 182 D 182 (354)
Q Consensus 182 ~ 182 (354)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 183
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=126.37 Aligned_cols=82 Identities=28% Similarity=0.484 Sum_probs=75.0
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||++++|+++|+++|++||.|++|+|+++ .++.++|||||+|.+.++|++|++.||+.. ++| +.|+|+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--RTIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE-ETT--EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEE
Confidence 4689999999999999999999999999999999998 578899999999999999999999999976 565 789999
Q ss_pred ecCChH
Q 018554 180 WADTEK 185 (354)
Q Consensus 180 ~a~~~~ 185 (354)
|++.+.
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 997653
No 184
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=127.03 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=69.0
Q ss_pred ccceEEEecCCC-CCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-ccCCCceeEEE
Q 018554 101 LEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KMEGSSVPLVV 178 (354)
Q Consensus 101 ~~~~l~V~~l~~-~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~~g~~~~l~v 178 (354)
..++|||+||++ ++|++||+++|++||.|.+|.|+++ ++||||+|++.++|.+|++.||+.. .++| ++|.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G--r~l~V 86 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFG--KPVRV 86 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETT--EECEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECC--cEEEE
Confidence 468999999999 9999999999999999999999976 6899999999999999999998753 3566 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
.||+..
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999754
No 185
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=124.34 Aligned_cols=84 Identities=31% Similarity=0.481 Sum_probs=73.9
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
.......+.++|||+|||.++++++|+++|++||+|.+|+++++ +|||||+|.+.++|++|++.||+.. +.+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~-~~g- 78 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMP-LRG- 78 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCC-BTT-
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCE-eCC-
Confidence 34456678899999999999999999999999999999999865 5799999999999999999998877 555
Q ss_pred Cccceeecccccc
Q 018554 86 SSPLQVKYADGEL 98 (354)
Q Consensus 86 ~~~l~v~~~~~~~ 98 (354)
+.|+|.+++.+.
T Consensus 79 -~~l~v~~a~~~~ 90 (99)
T 2cpj_A 79 -KQLRVRFACHSA 90 (99)
T ss_dssp -BCCEEEESSCCS
T ss_pred -ceEEEEEcCCCC
Confidence 889999987654
No 186
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=124.79 Aligned_cols=80 Identities=31% Similarity=0.527 Sum_probs=74.3
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEE-EEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL-QILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i-~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
.++|||+||+.++++++|+++|++||.|.++ +|+++ .++.++|||||+|++.++|++|++.||+.. ++| +.|+|+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~ 81 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCN--RPITVS 81 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE-ETT--EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEE
Confidence 5799999999999999999999999999999 99998 688999999999999999999999999987 555 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 82 ~a~~~ 86 (96)
T 1x5t_A 82 YAFKK 86 (96)
T ss_dssp ESCCC
T ss_pred Eeccc
Confidence 99765
No 187
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=2e-17 Score=128.35 Aligned_cols=82 Identities=34% Similarity=0.523 Sum_probs=74.9
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||+.++|+++|+++|+.||.|++|.|+.+ .++.++|||||+|.+.++|.+|++.|||.. ++| +.|.|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V 100 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMG--QTIQV 100 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--cEEEE
Confidence 34689999999999999999999999999999999998 578999999999999999999999999987 565 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
+|++.+
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 998754
No 188
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7e-18 Score=132.01 Aligned_cols=88 Identities=23% Similarity=0.347 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
...+.++|||+|||.++|+++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|++|++.||+.. +.+ +.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l 97 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYK-LYG--KIL 97 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCB-CSS--CBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCE-eCC--cEE
Confidence 44567999999999999999999999999998544333333378999999999999999999999998866 444 889
Q ss_pred eeecccccccc
Q 018554 90 QVKYADGELER 100 (354)
Q Consensus 90 ~v~~~~~~~~~ 100 (354)
+|.+++.+..+
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99998776543
No 189
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=126.20 Aligned_cols=85 Identities=19% Similarity=0.380 Sum_probs=73.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.....+.++|||+|||.++++++|+++|++||.| +++++ .+++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 81 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKRE-IEG--R 81 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEE-ETT--E
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCE-eCC--e
Confidence 3456788999999999999999999999999977 56677 579999999999999999999999998866 555 8
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.+++.+..
T Consensus 82 ~l~v~~a~~~~~ 93 (101)
T 2fc9_A 82 AIRLELQGPRGS 93 (101)
T ss_dssp EEEEEECSSCCC
T ss_pred EEEEEEcCCCCC
Confidence 899999876543
No 190
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.4e-17 Score=125.00 Aligned_cols=79 Identities=22% Similarity=0.529 Sum_probs=69.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
......++|||+|||.++++++|+++|++||.|.+|+++ +++|||||+|.+.++|++|++.||+.. +.+ +.
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~ 92 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFP-FQG--RN 92 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCe-ECC--eE
Confidence 345567999999999999999999999999999999997 357899999999999999999998876 555 88
Q ss_pred ceeecccc
Q 018554 89 LQVKYADG 96 (354)
Q Consensus 89 l~v~~~~~ 96 (354)
|+|.|++.
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 89988865
No 191
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=126.18 Aligned_cols=81 Identities=32% Similarity=0.555 Sum_probs=73.7
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||+.++++++|+++|++||.|++|+|+++ .++.++|||||+|.+.++|.+|++.||+.. ++| +.|+|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS-VDG--RQIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC-TTS--CCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEEEE
Confidence 4689999999999999999999999999999999998 478889999999999999999999999987 666 678888
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++..
T Consensus 88 ~a~~~ 92 (102)
T 1x5s_A 88 QAGKS 92 (102)
T ss_dssp EEECC
T ss_pred ECCCC
Confidence 88654
No 192
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=128.66 Aligned_cols=85 Identities=14% Similarity=0.209 Sum_probs=76.0
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCe-eEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTI-KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v-~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||++++|+++|+++|+.||.| .+|+|++|.++.++|||||+|++.++|.+||+. |+.. ++| +.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~-~~g--r~i~v 88 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKK-LNG--REAFV 88 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEE-ETT--EEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCc-cCC--eEEEE
Confidence 346899999999999999999999999999 899999999999999999999999999999987 8865 666 78999
Q ss_pred EecCChHHHH
Q 018554 179 KWADTEKERQ 188 (354)
Q Consensus 179 ~~a~~~~~~~ 188 (354)
.++..+..+.
T Consensus 89 ~~a~~~~~~~ 98 (114)
T 2cpy_A 89 HVVTLEDMRE 98 (114)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHH
Confidence 9998765544
No 193
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=3e-17 Score=129.02 Aligned_cols=80 Identities=21% Similarity=0.393 Sum_probs=72.7
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||++++++++|+++|++||.|++|+|+++ .++.++|||||+|.+.++|++|++.|||.. ++| +.|+|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V 114 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ-VGT--KRLKV 114 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE-ETT--EECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEE
Confidence 34689999999999999999999999999999999998 578999999999999999999999999987 665 68899
Q ss_pred EecC
Q 018554 179 KWAD 182 (354)
Q Consensus 179 ~~a~ 182 (354)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 8874
No 194
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=122.66 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=71.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
.+....++|||+|||+++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.||+.. +.+ +.
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 85 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLR-LGT--DT 85 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCC-SSS--SC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCE-ECC--cE
Confidence 3456689999999999999999999999999997 677654 688999999999999999999998876 555 78
Q ss_pred ceeecccccc
Q 018554 89 LQVKYADGEL 98 (354)
Q Consensus 89 l~v~~~~~~~ 98 (354)
|+|.+++.+.
T Consensus 86 l~V~~a~~~~ 95 (97)
T 2e5j_A 86 LRVALARQQR 95 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCCCC
Confidence 9999887654
No 195
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=123.82 Aligned_cols=80 Identities=30% Similarity=0.449 Sum_probs=72.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS----QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~----~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
.++|||+||++++++++|+++|++||.|++|.|+++. ++.++|||||+|.+.++|++|++.||+.. ++| +.|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 81 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT-VDG--HKLE 81 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE-ETT--EECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe-eCC--eEEE
Confidence 5789999999999999999999999999999999874 33789999999999999999999999987 665 7899
Q ss_pred EEecCCh
Q 018554 178 VKWADTE 184 (354)
Q Consensus 178 v~~a~~~ 184 (354)
|+|++.+
T Consensus 82 V~~a~~~ 88 (98)
T 2cpf_A 82 VRISERA 88 (98)
T ss_dssp EECSSCS
T ss_pred EEEccCC
Confidence 9999765
No 196
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=123.51 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=71.4
Q ss_pred cceEEEecCCCCCCHHHHH----HhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 102 EHKLFIGMLPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~----~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
.++|||+||++++++++|+ ++|++||.|++|+|+++..+ ++||||+|++.++|++|++.|||.. ++| +.|+
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~-~~g--r~l~ 83 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYK-IGS--KKIL 83 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEE-ETT--EEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEE
Confidence 5789999999999999999 99999999999999998655 8999999999999999999999976 565 7899
Q ss_pred EEecCCh
Q 018554 178 VKWADTE 184 (354)
Q Consensus 178 v~~a~~~ 184 (354)
|++|+..
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9999754
No 197
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.8e-17 Score=125.86 Aligned_cols=82 Identities=28% Similarity=0.458 Sum_probs=74.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhC------CCcccCCC
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAIN------GKHKMEGS 172 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~------g~~~~~g~ 172 (354)
...++|||+||++++|+++|+++|++||.|++|+|+++ .++.++|||||+|.+.++|.+|++.|| +.. ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~-~~g- 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK-LDG- 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE-SSS-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE-EcC-
Confidence 34678999999999999999999999999999999998 478899999999999999999999999 765 666
Q ss_pred ceeEEEEecCCh
Q 018554 173 SVPLVVKWADTE 184 (354)
Q Consensus 173 ~~~l~v~~a~~~ 184 (354)
+.|+|+|+..+
T Consensus 91 -~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 -RQLKVDLAVTR 101 (111)
T ss_dssp -CEEEEECCCCC
T ss_pred -EEEEEEECCCC
Confidence 68999999765
No 198
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=4.9e-17 Score=121.85 Aligned_cols=80 Identities=24% Similarity=0.344 Sum_probs=72.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+||+.++++++|+++|++||.|++++|.++ ++.++|||||+|.+.++|++|++.||+.. ++| +.|+|+|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l~v~~ 82 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMK-LSG--REIDVRI 82 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCC-BTT--BCCCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEEE
Confidence 3679999999999999999999999999999999985 77889999999999999999999999977 666 6889999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
++..
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8764
No 199
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-17 Score=128.59 Aligned_cols=79 Identities=25% Similarity=0.443 Sum_probs=69.7
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-cccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~~g~~~~l~v 178 (354)
...++|||+||++++|+++|+++|++||.|++|+|+++ ||||||+|++.++|.+|++.|++. ..++| +.|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G--r~l~V 101 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QPIYI 101 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTT--BCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--eEEEE
Confidence 34689999999999999999999999999999999986 899999999999999999999853 33666 68999
Q ss_pred EecCChH
Q 018554 179 KWADTEK 185 (354)
Q Consensus 179 ~~a~~~~ 185 (354)
.|++.+.
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9997653
No 200
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.6e-19 Score=137.23 Aligned_cols=88 Identities=19% Similarity=0.394 Sum_probs=79.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~--------i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~ 80 (354)
++..+.++|||+|||.++++++|+++|++||.|.+ |.|++|+.+++++|||||+|.+.++|++|++.||+..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34567899999999999999999999999999999 9999999999999999999999999999999998866
Q ss_pred cCCCCCccceeeccccccc
Q 018554 81 TLPGASSPLQVKYADGELE 99 (354)
Q Consensus 81 ~~~g~~~~l~v~~~~~~~~ 99 (354)
+.+ +.|+|.+++.+..
T Consensus 82 -~~g--~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 82 -FSG--NPIKVSFATRRAD 97 (116)
Confidence 555 7888988876544
No 201
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=6.3e-17 Score=120.40 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=72.8
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+||+.++++++|+++|+.||.|.+++++++. ++.++|||||+|.+.++|++|+ .||+.. ++| +.|+|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~-~~g--~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL-FRG--RQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE-ETT--EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE-ECC--cEEEEEE
Confidence 5799999999999999999999999999999999984 8899999999999999999999 999987 565 7899999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
+++.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8753
No 202
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=126.88 Aligned_cols=82 Identities=24% Similarity=0.454 Sum_probs=73.7
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
....++|||+||+.++|+++|+++|++||.|++|+++++..+ ++|||||+|++.++|++|++.|||.. ++| +.|+|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-~kg~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V 101 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTV-VEG--RKIEV 101 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB-CTTEEEEECCCSHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC-CceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEE
Confidence 344789999999999999999999999999999999988643 79999999999999999999999987 666 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
++++.+
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998764
No 203
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=3e-17 Score=131.06 Aligned_cols=82 Identities=28% Similarity=0.400 Sum_probs=74.8
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||+.++|+++|+++|++||.|++|+|+++ .++.++|||||+|++.++|++|++.|||.. ++| +.|+|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~-i~g--~~l~V 120 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDG--RRIRV 120 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC-SSS--SCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEE
Confidence 34689999999999999999999999999999999998 478899999999999999999999999976 666 68899
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
+|++.+
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998765
No 204
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.9e-17 Score=126.91 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=74.5
Q ss_pred cccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeE
Q 018554 98 LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (354)
Q Consensus 98 ~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l 176 (354)
.+...++|||+||++++|+++|+++|++||.|++|+|+++ .++.++|||||+|.+.++|++|++.+++ . ++| +.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~-~~g--~~l 88 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-I-IDG--RKA 88 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-E-ETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-c-CCC--EEE
Confidence 3445789999999999999999999999999999999998 4789999999999999999999999998 4 666 789
Q ss_pred EEEecCCh
Q 018554 177 VVKWADTE 184 (354)
Q Consensus 177 ~v~~a~~~ 184 (354)
+|+|+...
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99998644
No 205
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=119.48 Aligned_cols=81 Identities=22% Similarity=0.441 Sum_probs=69.9
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh-cCCccCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC-HNKKTLPG 84 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l-~~~~~~~g 84 (354)
....+....++|||+|||.++++++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.| ++.. +.+
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~-~~g 76 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLI-VNG 76 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCE-ETT
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCee-ECC
Confidence 34455678899999999999999999999999999999999874 689999999999999999998 5544 655
Q ss_pred CCccceeeccc
Q 018554 85 ASSPLQVKYAD 95 (354)
Q Consensus 85 ~~~~l~v~~~~ 95 (354)
+.|+|.|++
T Consensus 77 --~~l~v~~ak 85 (85)
T 2ytc_A 77 --RRLNVKWGR 85 (85)
T ss_dssp --EECCEEECC
T ss_pred --CEEEEEecC
Confidence 788888764
No 206
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=1.1e-16 Score=118.73 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=70.4
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
+...++|||+||+.++++++|+++|++||.|.+++++++. ++.++|||||+|.+.++|.+|++. ++.. ++| +.|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~-~~g--~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR-LDG--RVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE-ETT--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE-ECC--EEEE
Confidence 3446899999999999999999999999999999999984 799999999999999999999965 7755 676 6888
Q ss_pred EEec
Q 018554 178 VKWA 181 (354)
Q Consensus 178 v~~a 181 (354)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8876
No 207
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.1e-17 Score=122.60 Aligned_cols=77 Identities=27% Similarity=0.477 Sum_probs=68.0
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-cccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~~g~~~~l~v~ 179 (354)
..++|||+||++++|+++|+++|++||.|++|.|+++ ||||||+|++.++|.+|++.|++. ..++| ++|.|.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G--r~l~V~ 86 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRN--QPIYIQ 86 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETT--EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--cEEEEE
Confidence 4679999999999999999999999999999999976 899999999999999999987532 23565 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99765
No 208
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=126.68 Aligned_cols=80 Identities=24% Similarity=0.417 Sum_probs=72.1
Q ss_pred cceEEEecCCCCCCHHHHH---HhhccCCCeeEEEEeeCC-C---CCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCce
Q 018554 102 EHKLFIGMLPKNVSEAEVS---ALFSIYGTIKDLQILRGS-Q---QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~---~~F~~~G~v~~i~i~~~~-~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~ 174 (354)
.++|||+||++++++++|+ ++|++||.|++|.|+++. + +.++|||||+|++.++|++|++.|||.. ++| +
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~-~~g--r 91 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV-VDG--R 91 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE-ETT--E
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE-ECC--E
Confidence 5789999999999999999 999999999999999885 2 3566999999999999999999999987 666 7
Q ss_pred eEEEEecCCh
Q 018554 175 PLVVKWADTE 184 (354)
Q Consensus 175 ~l~v~~a~~~ 184 (354)
.|+|+||.++
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 8999999765
No 209
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-17 Score=127.73 Aligned_cols=83 Identities=24% Similarity=0.504 Sum_probs=74.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||++++++++|+++|+.||.|++|+|+.+. ++.++|||||+|.+.++|.+|+ .||+.. ++| +.|.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQR-LLG--VPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEE-ETT--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCE-eCC--eEEEE
Confidence 346899999999999999999999999999999999985 5889999999999999999999 999976 565 78999
Q ss_pred EecCChHH
Q 018554 179 KWADTEKE 186 (354)
Q Consensus 179 ~~a~~~~~ 186 (354)
+|++.+..
T Consensus 99 ~~a~~~~~ 106 (114)
T 2cq4_A 99 QASQAEKN 106 (114)
T ss_dssp EEHHHHHH
T ss_pred EecCCCcc
Confidence 99865543
No 210
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=7.8e-17 Score=127.79 Aligned_cols=82 Identities=26% Similarity=0.445 Sum_probs=75.2
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||+.++++++|+++|++||.|++|+|.++.++.++|||||+|++.++|.+|++.|||.. ++| +.|+|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~ 109 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPMDIQ 109 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEE-SSS--CEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCE-ECC--cEEEEE
Confidence 34689999999999999999999999999999999999888999999999999999999999999976 666 689999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
||...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 98754
No 211
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=2.7e-17 Score=130.08 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=71.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~--~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
.+....++|||+|||+++||++|+++|+.| .|. +|+|++|+. |+++|||||+|.+.++|++||+. ++ ..+.+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~-~~l~g-- 110 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HK-ERIGH-- 110 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TT-CCBTT--
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CC-CEECC--
Confidence 455678999999999999999999999999 666 999999987 99999999999999999999986 45 44666
Q ss_pred ccceeeccccc
Q 018554 87 SPLQVKYADGE 97 (354)
Q Consensus 87 ~~l~v~~~~~~ 97 (354)
+.|+|..+..+
T Consensus 111 R~I~V~~a~~~ 121 (126)
T 2hgm_A 111 RYIEVFKSSQE 121 (126)
T ss_dssp BCCCCEEECHH
T ss_pred EEEEEEECCHH
Confidence 67777766543
No 212
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-17 Score=128.37 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=69.3
Q ss_pred ccCCCCCCeEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc--CC
Q 018554 8 KKSSEERVKLFV--GQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT--LP 83 (354)
Q Consensus 8 ~~~~~~~~~lfV--g~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~--~~ 83 (354)
+....+.++||| |||+++++|++|+++|++||+|.+|.|+. .||||||+|.+.++|++|++.||++.+ ..
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 345667889999 88999999999999999999999998764 368999999999999999999999864 23
Q ss_pred CCCccceeecccc
Q 018554 84 GASSPLQVKYADG 96 (354)
Q Consensus 84 g~~~~l~v~~~~~ 96 (354)
+..++|.|.+++.
T Consensus 93 g~g~~l~v~~a~~ 105 (114)
T 2cq2_A 93 GQKITLYLNFVEK 105 (114)
T ss_dssp SCEEECEEEEESC
T ss_pred CCCcEEEEEeccc
Confidence 3357788776653
No 213
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=126.20 Aligned_cols=83 Identities=25% Similarity=0.384 Sum_probs=75.4
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCee--------EEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCccc
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK--------DLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKM 169 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~--------~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 169 (354)
....++|||+||++++|+++|+++|++||.|. .|+|+.+ .++.++|||||+|.+.++|.+|++.||+.. +
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD-F 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE-E
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc-c
Confidence 34468999999999999999999999999999 6999998 689999999999999999999999999987 5
Q ss_pred CCCceeEEEEecCCh
Q 018554 170 EGSSVPLVVKWADTE 184 (354)
Q Consensus 170 ~g~~~~l~v~~a~~~ 184 (354)
+| +.|+|+|++.+
T Consensus 91 ~g--~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QG--SKLKVSLARKK 103 (113)
T ss_dssp TT--EECEEECSSCC
T ss_pred CC--CEEEEEECCCC
Confidence 55 78999998765
No 214
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=127.97 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..+.++|||+|||+++|++||+++|+.| .|.+|+|++|+. |+++|||||+|.+.++|++|| .+|+.. +.+ +.|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~-~~g--r~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRML-MIQ--RYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEE-ETT--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCe-ECC--eEEE
Confidence 3456799999999999999999999999 899999999986 999999999999999999999 676644 655 6777
Q ss_pred eecccc
Q 018554 91 VKYADG 96 (354)
Q Consensus 91 v~~~~~ 96 (354)
|..+..
T Consensus 87 V~~a~~ 92 (109)
T 2dnn_A 87 VSPATE 92 (109)
T ss_dssp EEECCH
T ss_pred EEECCc
Confidence 766543
No 215
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.1e-17 Score=123.67 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=68.9
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-ccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~~g~~~~l~v 178 (354)
...++|||+||++++++++|+++|++||.|++|.|+++ ||||||+|++.++|.+|++.|++.. .++| ++|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G--r~l~V 85 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAG--QQAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSS--SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--EEEEE
Confidence 34689999999999999999999999999999999875 8999999999999999999997653 3566 68999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
.|++.+
T Consensus 86 ~~a~~~ 91 (104)
T 1wex_A 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEccCc
Confidence 999764
No 216
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=119.34 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=72.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+||++++++++|+++|+.| .|.+|+|+++.++.++|||||+|++.++|.+|++ ||+.. ++| +.|.|.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~-~~g--r~i~v~~ 83 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREY-MGG--RYIEVFR 83 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEE-ETT--EEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCce-eCC--cEEEEEE
Confidence 36899999999999999999999999 9999999999889999999999999999999999 99976 666 6899999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
++.+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8754
No 217
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=6.5e-17 Score=130.89 Aligned_cols=81 Identities=26% Similarity=0.502 Sum_probs=74.4
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||+.++|+++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.||+.. ++| +.|+|+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~ 117 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN-ILN--KRLKVA 117 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE-CSS--CEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEEEE
Confidence 36899999999999999999999999999999999984 68899999999999999999999999976 666 689999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 99765
No 218
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.4e-16 Score=122.07 Aligned_cols=79 Identities=20% Similarity=0.416 Sum_probs=72.1
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||++++++++|+++|+.|| |++|+|+++. ++.++|||||+|++.++|++|+ .||+.. ++| +.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~V~ 88 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL-LGD--RSLRVD 88 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE-ETT--EECEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe-ECC--eEEEEE
Confidence 368999999999999999999999997 9999999995 6899999999999999999999 899976 565 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 89 ~a~~~ 93 (103)
T 2dng_A 89 IAEGR 93 (103)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98765
No 219
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.6e-17 Score=124.67 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=71.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC---
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA--- 85 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~--- 85 (354)
......++|||+|||+++++++|+++|++||+|.+|.|++| |||||+|.+.++|++||+.||+..+ .+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~~~ 81 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF-RSHEGE 81 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEE-ECTTSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCc-cCCcCc
Confidence 34567899999999999999999999999999999999887 7999999999999999999988764 332
Q ss_pred Cccceeeccccccc
Q 018554 86 SSPLQVKYADGELE 99 (354)
Q Consensus 86 ~~~l~v~~~~~~~~ 99 (354)
.+.|+|.+++.+..
T Consensus 82 ~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 82 TAYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEEESSCCSC
T ss_pred ceEEEEEeCCCCCC
Confidence 27788888876543
No 220
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=122.18 Aligned_cols=80 Identities=28% Similarity=0.505 Sum_probs=71.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCC-cceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQT-SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
.++|||+||+.++|+++|+++|++||.|.++.++.+. ++. ++|||||+|.+.++|.+|++.|||.. ++| +.|+|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ-IDG--QEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe-ECC--eEEEEE
Confidence 5789999999999999999999999999999999885 333 79999999999999999999999987 665 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
++.+.
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 98654
No 221
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=7.6e-17 Score=124.62 Aligned_cols=82 Identities=28% Similarity=0.490 Sum_probs=70.4
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
........++|||+|||.++++++|+++|++||.|.+|.++ +|||||+|.+.++|++|++.||+.. +.+
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~-~~g-- 92 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKS-FAN-- 92 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCE-ETT--
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34456788999999999999999999999999999999997 6899999999999999999998877 444
Q ss_pred ccceeeccccccc
Q 018554 87 SPLQVKYADGELE 99 (354)
Q Consensus 87 ~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 93 ~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 93 QPLEVVYSKLPAK 105 (108)
T ss_dssp EECEEESCSCCC-
T ss_pred eEEEEEEecCCCC
Confidence 8899999876544
No 222
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.1e-17 Score=124.42 Aligned_cols=82 Identities=16% Similarity=0.391 Sum_probs=73.1
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
.+....++|||+|||.++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|++.. +.+ +.
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 90 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTT-IEG--HV 90 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--cE
Confidence 35667899999999999999999999999999999999887 6799999999999999999998866 555 88
Q ss_pred ceeeccccccc
Q 018554 89 LQVKYADGELE 99 (354)
Q Consensus 89 l~v~~~~~~~~ 99 (354)
|+|.|++.+..
T Consensus 91 l~v~~a~~~~~ 101 (109)
T 1x4g_A 91 VKCYWGKESPD 101 (109)
T ss_dssp CEEECCCCCCS
T ss_pred EEEEecCCCCC
Confidence 99999876544
No 223
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=7e-17 Score=126.92 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=73.0
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCC---eeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGT---IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~---v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
..++|||+||++++|+++|+++|+.||. |.+|+|+++..++++|||||+|++.++|++||+ +|+.. ++| +.|+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r~i~ 91 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRES-MGH--RYIE 91 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEE-ETT--EEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCe-ECC--eEEE
Confidence 4678999999999999999999999999 899999999889999999999999999999999 89966 666 6899
Q ss_pred EEecCCh
Q 018554 178 VKWADTE 184 (354)
Q Consensus 178 v~~a~~~ 184 (354)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998644
No 224
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=1.2e-16 Score=133.81 Aligned_cols=87 Identities=39% Similarity=0.681 Sum_probs=78.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.......++|||+|||.++|+++|+++|++||.|.+|.+++|.. |+++|||||+|.+.++|.+|++.||+..+..+..+
T Consensus 89 ~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 167 (175)
T 3nmr_A 89 KNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSS 167 (175)
T ss_dssp CCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSS
T ss_pred ccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCC
Confidence 33455789999999999999999999999999999999999974 89999999999999999999999999887776678
Q ss_pred cceeeccc
Q 018554 88 PLQVKYAD 95 (354)
Q Consensus 88 ~l~v~~~~ 95 (354)
.|.|+|++
T Consensus 168 ~l~V~~ad 175 (175)
T 3nmr_A 168 PMVVKFAD 175 (175)
T ss_dssp CCEEEECC
T ss_pred CeEEEecC
Confidence 99999874
No 225
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=4.1e-17 Score=117.42 Aligned_cols=74 Identities=22% Similarity=0.401 Sum_probs=67.7
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
+|||+|||+++++++|+++|++||.|.++.++++. ++.++|||||+|++.++|++|++ +|+.. ++| +.|+|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~-~~g--~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE-INN--KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC-SSS--CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE-ECC--EEEEEEeC
Confidence 59999999999999999999999999999999985 78999999999999999999997 89976 666 57888875
No 226
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=9.7e-17 Score=135.16 Aligned_cols=86 Identities=22% Similarity=0.373 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||+++++++|+++|++||.|++|.|+.|+ +++++|||||+|.+.++|++|++.|++.. +.+ +.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~-l~G--r~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCB-CSS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCE-ECC--EEE
Confidence 34557899999999999999999999999999999999999 89999999999999999999999998876 555 888
Q ss_pred eeeccccccc
Q 018554 90 QVKYADGELE 99 (354)
Q Consensus 90 ~v~~~~~~~~ 99 (354)
+|.++.....
T Consensus 160 ~V~~a~~~~~ 169 (177)
T 2f3j_A 160 DIQLVASQID 169 (177)
T ss_dssp EEEEESSGGG
T ss_pred EEEEecCCCC
Confidence 9988876543
No 227
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=5.4e-17 Score=122.36 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=71.2
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+|||+++|+++|+++|++||.|+++.++.+ .++.++|||||+|.+.++|++|++.||+.. ++| +.|+|++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--r~l~v~~ 91 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--RKVKLSG 91 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCe-ECC--cEEEEEe
Confidence 578999999999999999999999999998888876 578899999999999999999999999987 565 7899988
Q ss_pred cCC
Q 018554 181 ADT 183 (354)
Q Consensus 181 a~~ 183 (354)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 228
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-17 Score=129.61 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALV----DEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v----~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
..+.++|||+|||+++|++||+++|++||.| .+|+|++|+ +|+++|||||+|.+.++|++||+. |+ ..+.+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~-~~l~g-- 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HK-DLLGK-- 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TT-EESSS--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CC-CeeCC--
Confidence 4678999999999999999999999999975 689999995 799999999999999999999986 55 44655
Q ss_pred ccceeeccc
Q 018554 87 SPLQVKYAD 95 (354)
Q Consensus 87 ~~l~v~~~~ 95 (354)
+.|.|..+.
T Consensus 95 R~i~V~~a~ 103 (123)
T 2dha_A 95 RYIELFRST 103 (123)
T ss_dssp CEECCEEEC
T ss_pred eEEEEEECC
Confidence 566665543
No 229
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.4e-17 Score=123.14 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=71.8
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+|||+++++++|+++|++||.|+++.++.+ .++.++|||||+|.+.++|++|++.||+.. ++| +.|+|++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~V~~ 91 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--RKVKLVL 91 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE-ETT--EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe-eCC--eEEEEEE
Confidence 578999999999999999999999999998877776 678999999999999999999999999986 666 7899999
Q ss_pred cCC
Q 018554 181 ADT 183 (354)
Q Consensus 181 a~~ 183 (354)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 230
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=3.6e-17 Score=123.83 Aligned_cols=84 Identities=17% Similarity=0.393 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~----~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
+..+.++|||+|||.++++++|+ ++|++||.|.+|.+++ +++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g- 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYD- 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCE-ETT-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCE-ECC-
Confidence 45678999999999999999999 9999999999998874 47889999999999999999999999876 444
Q ss_pred Cccceeeccccccc
Q 018554 86 SSPLQVKYADGELE 99 (354)
Q Consensus 86 ~~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 79 -~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 79 -KPMRIQYAKTDSD 91 (97)
T ss_dssp -EECEEEECSSCCT
T ss_pred -cEEEEEEccCCCc
Confidence 8899999876544
No 231
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=2.3e-16 Score=130.23 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=74.6
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||++++|+++|+++|++||.|++|.|+++. ++.+++||||+|++.++|++||+.||+.. ++| +.|+|+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~ 114 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR-LDD--RIIRTD 114 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE-ETT--EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEEEE
Confidence 46899999999999999999999999999999999995 68899999999999999999999999987 555 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++..
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99764
No 232
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=129.05 Aligned_cols=68 Identities=22% Similarity=0.455 Sum_probs=62.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHHhc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~t---g~~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
......++|||+|||+++++++|+++|++||+|. +.++.++.+ |+++|||||+|.+.++|++||+.++
T Consensus 3 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 3 SGSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CSSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 3456789999999999999999999999999999 888888887 7999999999999999999999984
No 233
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=4.7e-17 Score=124.04 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=71.0
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~--~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
..++|||+||+.++++++|+++|+.|| |.+|+|+++. ++.++|||||+|.+.++|.+|+ .|||.. ++| +.|+|
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~-~~g--~~l~V 92 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN--RRIRV 92 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC-BTT--BCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE-ECC--eEEEE
Confidence 368999999999999999999999999 9999999985 7899999999999999999999 899977 666 67889
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
++++.+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 988764
No 234
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=122.13 Aligned_cols=79 Identities=24% Similarity=0.422 Sum_probs=72.2
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-C-CCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-Q-QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
..++|||+||++++|+++|+++|+.|| |++|.|+++. + +.++|||||+|.+.++|++|+ .||+.. ++| +.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~V 88 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN--KRIRV 88 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE-ETT--EECEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE-eCC--cEEEE
Confidence 368999999999999999999999999 9999999985 4 899999999999999999999 999987 565 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
++++.+
T Consensus 89 ~~a~~~ 94 (104)
T 1wi8_A 89 DVADQA 94 (104)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999765
No 235
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=2.2e-17 Score=126.31 Aligned_cols=82 Identities=27% Similarity=0.391 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||+++++++|+++|++||.|.+|.|++|+ +++++|||||+|.+.++|++|++ ++.. +.| +.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~-~~g--~~l 78 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQIN-FHG--KKL 78 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCE-ETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCe-ECC--EEE
Confidence 34567899999999999999999999999999999999999 89999999999999999999998 4544 555 677
Q ss_pred eeeccccc
Q 018554 90 QVKYADGE 97 (354)
Q Consensus 90 ~v~~~~~~ 97 (354)
.|.++..+
T Consensus 79 ~v~~a~~~ 86 (102)
T 2xs2_A 79 KLGPAIRK 86 (102)
T ss_dssp EEEEEEEC
T ss_pred EEEECCcC
Confidence 77766543
No 236
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=1.1e-16 Score=127.35 Aligned_cols=82 Identities=28% Similarity=0.508 Sum_probs=74.3
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||++++|+++|+++|++||.|++|.|+.+. ++.++|||||+|.+.++|++|++.||+.. ++| +.|.|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v 96 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--QPISV 96 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB-SSS--SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe-eCC--eEEEE
Confidence 346799999999999999999999999999999999984 88999999999999999999999999987 666 67899
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
+|+..+
T Consensus 97 ~~a~~~ 102 (126)
T 3ex7_B 97 DWCFVR 102 (126)
T ss_dssp EESEES
T ss_pred EEecCC
Confidence 998644
No 237
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=123.23 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=71.0
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
....++|||+||+.++|+++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.++ ..++| +.|+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~--~~l~g--~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDS--KTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC--EEETT--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC--CcCCC--EEEE
Confidence 3446899999999999999999999999999999999984 68999999999999999999999864 44776 6899
Q ss_pred EEecCCh
Q 018554 178 VKWADTE 184 (354)
Q Consensus 178 v~~a~~~ 184 (354)
|+++..+
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998764
No 238
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-17 Score=124.23 Aligned_cols=86 Identities=16% Similarity=0.266 Sum_probs=73.0
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
.......+.++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.|++.. +.+
T Consensus 8 ~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g- 80 (96)
T 1fjc_A 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE-IDG- 80 (96)
T ss_dssp TTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEE-ETT-
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC-
Confidence 344556678999999999999999999999999988766 3468899999999999999999999998865 555
Q ss_pred Cccceeeccccccc
Q 018554 86 SSPLQVKYADGELE 99 (354)
Q Consensus 86 ~~~l~v~~~~~~~~ 99 (354)
+.|+|.++..+..
T Consensus 81 -~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 81 -RSVSLYYTGEKGG 93 (96)
T ss_dssp -EEEEEEECSSSCC
T ss_pred -eEEEEEEcCCCCC
Confidence 7899998876543
No 239
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=123.09 Aligned_cols=80 Identities=21% Similarity=0.487 Sum_probs=71.5
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||+.++|+++|+++|++||.|++|+|..+ +.+++||||+|++.++|++|++.||+.. ++| +.|+|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V~ 94 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYD-YDG--YRLRVE 94 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEE
Confidence 34689999999999999999999999999999999764 4478999999999999999999999986 565 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++..
T Consensus 95 ~a~~~ 99 (109)
T 1x4a_A 95 FPRSG 99 (109)
T ss_dssp CCCCC
T ss_pred EcccC
Confidence 98764
No 240
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=118.61 Aligned_cols=81 Identities=26% Similarity=0.392 Sum_probs=71.4
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
+....+.++|||+|||.++++++|+++|++||.|.+|+++++ ||||+|.+.++|++|++.||+.. +.+ +
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 71 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKE-VKG--K 71 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCE-ECC--c
Confidence 345678899999999999999999999999999999999743 99999999999999999998866 555 8
Q ss_pred cceeeccccccc
Q 018554 88 PLQVKYADGELE 99 (354)
Q Consensus 88 ~l~v~~~~~~~~ 99 (354)
.|+|.+++....
T Consensus 72 ~l~v~~a~~~~~ 83 (90)
T 2dnp_A 72 RINVELSTKGQK 83 (90)
T ss_dssp ECEEEESCCCCC
T ss_pred EEEEEECCCCCC
Confidence 899999876544
No 241
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.6e-17 Score=133.88 Aligned_cols=119 Identities=16% Similarity=0.125 Sum_probs=70.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeec---cccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEE
Q 018554 57 GCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY---ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133 (354)
Q Consensus 57 G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~---~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~ 133 (354)
|+||.+|...+.+..++....... .+. ...-.. .........++|||+||++++|++||+++|++|| |++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--gg~--~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT--GGQ--QMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CcccccccCccccchhcccchhcc--CCC--CCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 578888887777766665432211 110 000010 1112233467999999999999999999999999 77999
Q ss_pred EeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 134 i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
|++|.+++++|||||+|++.++|++|| .+|+.. +++ +.|+|.++...
T Consensus 77 i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~-l~g--R~i~V~~a~~~ 123 (139)
T 2hgn_A 77 IEIGPDGRVTGEADVEFATHEEAVAAM-SKDRAN-MQH--RYIELFLNSTT 123 (139)
T ss_dssp CCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCS-SSS--CCCCCEECCCS
T ss_pred EEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCE-ECC--EEEEEEECCCC
Confidence 999988999999999999999999999 788865 676 46777777554
No 242
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=4.8e-17 Score=125.94 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
.....++|||+|||+++++++|+++|++|| +|..|.|..+ +++|||||+|.+.++|++||+.||+.. +.+ +.
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~-l~G--r~ 96 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIE-FRG--SV 96 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEE-ETT--EE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCE-ECC--eE
Confidence 455678999999999999999999999999 8999988643 488999999999999999999998866 555 78
Q ss_pred ceeeccccc
Q 018554 89 LQVKYADGE 97 (354)
Q Consensus 89 l~v~~~~~~ 97 (354)
|+|.+++..
T Consensus 97 i~V~~a~~~ 105 (111)
T 2jvr_A 97 ITVERDDNP 105 (111)
T ss_dssp EEEEESCC-
T ss_pred EEEEECCCC
Confidence 888887643
No 243
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=120.45 Aligned_cols=78 Identities=27% Similarity=0.479 Sum_probs=69.8
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+||+.++|+++|+++|++||.|++|++.++ ++||||+|++.++|++|++.||+.. +++..+.|+|+|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~-~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFP-LGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCB-CSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCE-eCCCCcEEEEEE
Confidence 3578999999999999999999999999999999875 7899999999999999999999986 562237899999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
++++
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9765
No 244
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=2.5e-17 Score=132.74 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||+++||+||+++|++|| |.+|+|++|+. ++++|||||+|.+.++|++|| .+|+.. +.+ +.|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~-l~g--R~i 115 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRAN-MQH--RYI 115 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCS-SSS--CCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCE-ECC--EEE
Confidence 456778999999999999999999999999 67999999987 999999999999999999999 676644 655 677
Q ss_pred eeeccccc
Q 018554 90 QVKYADGE 97 (354)
Q Consensus 90 ~v~~~~~~ 97 (354)
+|..+...
T Consensus 116 ~V~~a~~~ 123 (139)
T 2hgn_A 116 ELFLNSTT 123 (139)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 77766543
No 245
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-17 Score=117.24 Aligned_cols=75 Identities=20% Similarity=0.392 Sum_probs=68.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
++|||+|||.++++++|+++|++||.|.++.+.++. ++.++|||||+|.+.++|.+|++.++ .. ++| +.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~-~~g--~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HE-LDS--KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CC-CSS--CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Cc-cCC--EEEEEEec
Confidence 479999999999999999999999999999999984 78999999999999999999999988 44 777 57888876
No 246
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=131.55 Aligned_cols=82 Identities=16% Similarity=0.360 Sum_probs=73.8
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeE--EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCC----cccCC
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD--LQILRGS-QQTSKGCAFLKYETKEQALAALEAINGK----HKMEG 171 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~--i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~----~~~~g 171 (354)
....++|||+||++++|+++|+++|++||.|.. |+|++|+ ++.+||||||+|++. +|.+|++.|||. . ++|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~-~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT-IDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC-GGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc-CCC
Confidence 344689999999999999999999999999976 9999996 899999999999999 999999999997 5 555
Q ss_pred CceeEEEEecCCh
Q 018554 172 SSVPLVVKWADTE 184 (354)
Q Consensus 172 ~~~~l~v~~a~~~ 184 (354)
+.|+|+|++..
T Consensus 98 --r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 --KTINVEFAKGS 108 (131)
T ss_dssp --CCCCCEECCCS
T ss_pred --EEEEEEECCCC
Confidence 68899998764
No 247
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=122.26 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=68.8
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+|||+++|++||+++|+.||. ++|+|++|++++++|||||+|++.++|++||+ +|+.. +++ +.|+|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~g--r~i~V~~ 88 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKAN-MQH--RYVELFL 88 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCC-SSS--SCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCe-ECC--cEEEEEE
Confidence 3679999999999999999999999995 59999999999999999999999999999995 78865 666 4677777
Q ss_pred cCC
Q 018554 181 ADT 183 (354)
Q Consensus 181 a~~ 183 (354)
+..
T Consensus 89 ~~~ 91 (102)
T 1wez_A 89 NST 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 248
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.3e-17 Score=120.28 Aligned_cols=78 Identities=17% Similarity=0.295 Sum_probs=70.1
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+||++++++++|+++|++||.|.+++|+++ .++.++|||||+|.+.++|.+|++.|||.. ++| +.|+|+|
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~~~~~~ 81 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG-VQA--QMAKQSG 81 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT-CCE--ESCCSSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe-Eee--EEEeecC
Confidence 578999999999999999999999999999999998 578999999999999999999999999976 555 5666666
Q ss_pred cC
Q 018554 181 AD 182 (354)
Q Consensus 181 a~ 182 (354)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 249
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.8e-17 Score=122.66 Aligned_cols=80 Identities=19% Similarity=0.432 Sum_probs=69.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
++|||+||+.++++++|+++|++||.|+++++.++. ++.++|||||+|++.+ |.+|++.|||.. ++| +.|+|++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~-~~g--~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD-FMG--RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC-CSS--SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE-ECC--eEEEEEEc
Confidence 589999999999999999999999999999999984 6899999999999999 999999999987 666 67899998
Q ss_pred CChHH
Q 018554 182 DTEKE 186 (354)
Q Consensus 182 ~~~~~ 186 (354)
+....
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 76533
No 250
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=119.19 Aligned_cols=82 Identities=28% Similarity=0.447 Sum_probs=72.1
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
+.......++|||+|||.++++++|+++|++||.|.+|.++++ ||||+|.+.++|++|++.||+.. +.+
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~-~~g-- 71 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTE-FQG-- 71 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCe-eCC--
Confidence 3456778899999999999999999999999999999999743 99999999999999999998876 555
Q ss_pred ccceeeccccccc
Q 018554 87 SPLQVKYADGELE 99 (354)
Q Consensus 87 ~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 72 ~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 72 KRMHVQLSTSRLR 84 (92)
T ss_dssp EEEEEEESSCCCS
T ss_pred cEEEEEEccCCCC
Confidence 8899999876544
No 251
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=2.1e-16 Score=129.58 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=73.7
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.......++|||+|||+++|+++|+++|++||.|.+|+|++| ++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 138 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRT-LCG--C 138 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSC-SSS--S
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCE-ECC--e
Confidence 345667899999999999999999999999999999999887 57899999999999999999999866 555 8
Q ss_pred cceeecccccc
Q 018554 88 PLQVKYADGEL 98 (354)
Q Consensus 88 ~l~v~~~~~~~ 98 (354)
.|+|.+++.+.
T Consensus 139 ~l~v~~a~~~~ 149 (150)
T 2i2y_A 139 RVRVELSNGEK 149 (150)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEcCCCC
Confidence 89999987653
No 252
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=126.34 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=72.6
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeE-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~-i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||++++|+++|+++|+.||.|.+ +.+..+.++.++|||||+|.+.++|.+||+ ||+.. ++| +.|.|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY-MGN--RFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC-STT--SCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe-ECC--cEEEEE
Confidence 3589999999999999999999999999988 455555789999999999999999999999 99976 666 578999
Q ss_pred ecCChHHHH
Q 018554 180 WADTEKERQ 188 (354)
Q Consensus 180 ~a~~~~~~~ 188 (354)
++..+....
T Consensus 100 ~a~~~~~~~ 108 (124)
T 1wel_A 100 PITKKGMLE 108 (124)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHH
Confidence 987765433
No 253
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=124.51 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||.++++++|+++|++||.|.+|.|++ ++|||||+|.+.++|++|++.||+.. +.+ +.|
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l 76 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSK-FHH--VPL 76 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCB-SSS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCE-ECC--eEE
Confidence 344578999999999999999999999999999998864 56799999999999999999999877 444 789
Q ss_pred eeeccccc
Q 018554 90 QVKYADGE 97 (354)
Q Consensus 90 ~v~~~~~~ 97 (354)
.|.|+...
T Consensus 77 ~V~~a~~~ 84 (111)
T 1whx_A 77 YLEWAPIG 84 (111)
T ss_dssp EEEEEETT
T ss_pred EEEECCCC
Confidence 99988653
No 254
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=121.60 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=70.3
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.++|||+||++++|++||+++|+.| .|.+|.|++|.+++++|||||+|.+.++|++|+ .+|+.. ++| +.|+|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~-~~g--r~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRML-MIQ--RYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEE-ETT--EEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCe-ECC--eEEEEEEC
Confidence 5789999999999999999999999 899999999988999999999999999999999 689876 666 68899888
Q ss_pred CC
Q 018554 182 DT 183 (354)
Q Consensus 182 ~~ 183 (354)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 255
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=122.43 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=70.7
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeE-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~-i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||++++|+++|+++|+.||.|.+ |.|+.+.+++++|||||+|++.++|++|++. |+.. ++| +.|+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~-~~g--r~i~v~ 89 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKER-IGH--RYIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCC-SSS--SCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccch-hCC--cEEEEE
Confidence 3689999999999999999999999999988 8999988899999999999999999999997 8865 676 467887
Q ss_pred ecCC
Q 018554 180 WADT 183 (354)
Q Consensus 180 ~a~~ 183 (354)
++..
T Consensus 90 ~~~~ 93 (104)
T 1wg5_A 90 KSSR 93 (104)
T ss_dssp EECT
T ss_pred ECCH
Confidence 7754
No 256
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8e-17 Score=120.97 Aligned_cols=83 Identities=24% Similarity=0.372 Sum_probs=69.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~-v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
......++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||++..+.+ +
T Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~ 73 (93)
T 2cqh_A 3 SGSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHG--K 73 (93)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETT--E
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECC--E
Confidence 34567899999999999999999999999999 6666552 578999999999999999999998333555 8
Q ss_pred cceeecccccccc
Q 018554 88 PLQVKYADGELER 100 (354)
Q Consensus 88 ~l~v~~~~~~~~~ 100 (354)
.|+|.+++.+..+
T Consensus 74 ~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 74 IMEVDYSVSKKLR 86 (93)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEccCcccc
Confidence 8999998766543
No 257
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.5e-17 Score=126.15 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=66.5
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCC----HHH----HHHHHH--HhcCCc
Q 018554 15 VKLFVGQV----PKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPS----RQE----ADKAVN--ACHNKK 80 (354)
Q Consensus 15 ~~lfVg~L----p~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~----~~~----A~~Ai~--~l~~~~ 80 (354)
++|||+|| |++++|++|+++|+.||+|.+|.++.|+.||+++|||||+|.| .++ |.+|++ .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 566655
Q ss_pred cCCCCCccceeeccc
Q 018554 81 TLPGASSPLQVKYAD 95 (354)
Q Consensus 81 ~~~g~~~~l~v~~~~ 95 (354)
+.| +.|+|.+.+
T Consensus 83 -I~G--r~irV~ln~ 94 (136)
T 2j8a_A 83 -IMG--FKFEVILNK 94 (136)
T ss_dssp -ETT--EEEEEEECC
T ss_pred -ecC--cEEEEEECc
Confidence 555 777777654
No 258
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=126.19 Aligned_cols=83 Identities=27% Similarity=0.422 Sum_probs=72.3
Q ss_pred ccceEEEecCCCCCCHHHHH----HhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeE
Q 018554 101 LEHKLFIGMLPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~----~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l 176 (354)
..++|||+||++++++++|+ ++|++||.|++|.+.+ ++.+||||||+|.+.++|.+|++.|||.. +.| +.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~-l~g--r~l 102 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYP-FQG--NPL 102 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCC-CTT--SCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCE-eCC--CEE
Confidence 36789999999999999876 6999999999988764 57789999999999999999999999987 666 589
Q ss_pred EEEecCChHHHH
Q 018554 177 VVKWADTEKERQ 188 (354)
Q Consensus 177 ~v~~a~~~~~~~ 188 (354)
+|.||+.+....
T Consensus 103 ~V~~a~~~~~~~ 114 (127)
T 2a3j_A 103 VITFSETPQSQV 114 (127)
T ss_dssp EEEECCCCCHHH
T ss_pred EEEEccCcchhc
Confidence 999998765544
No 259
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.1e-16 Score=123.84 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=69.9
Q ss_pred ccceeeccccccccccceEEEecCCCCCCHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 87 SPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 87 ~~l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
..+.+.+... ....++|||+||++++++++|+++|++|| +|..+.|..+ .++|||||+|++.++|++||+.|||
T Consensus 15 ~~~~~~~~~~--p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng 89 (111)
T 2jvr_A 15 VPRGSHMSKL--PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNN 89 (111)
T ss_dssp ------------CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTT
T ss_pred eecchhcCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCC
Confidence 3444555443 22357999999999999999999999999 9999998643 3689999999999999999999999
Q ss_pred CcccCCCceeEEEEecCChH
Q 018554 166 KHKMEGSSVPLVVKWADTEK 185 (354)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~~ 185 (354)
.. ++| +.|+|++++...
T Consensus 90 ~~-l~G--r~i~V~~a~~~p 106 (111)
T 2jvr_A 90 IE-FRG--SVITVERDDNPP 106 (111)
T ss_dssp EE-ETT--EEEEEEESCC--
T ss_pred CE-ECC--eEEEEEECCCCC
Confidence 87 666 789999997653
No 260
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=120.30 Aligned_cols=77 Identities=30% Similarity=0.529 Sum_probs=70.1
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||+.++|+++|+++|++||.|++|++.++ ++||||+|.+.++|.+|++.||+.. ++| +.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l~v~ 84 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMP-LRG--KQLRVR 84 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCC-BTT--BCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCE-eCC--ceEEEE
Confidence 34679999999999999999999999999999999975 8999999999999999999999987 666 689999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 85 ~a~~~ 89 (99)
T 2cpj_A 85 FACHS 89 (99)
T ss_dssp ESSCC
T ss_pred EcCCC
Confidence 98764
No 261
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=9.6e-17 Score=123.37 Aligned_cols=81 Identities=22% Similarity=0.374 Sum_probs=73.5
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||++++++++|+++|++||.|++|+|+++ .++.++|||||+|++.++|.+|++. ++.. ++| +.|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~-~~g--~~l~V 89 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT-LDG--RNIDP 89 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE-ETT--EEEBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe-ECC--EEEEE
Confidence 34689999999999999999999999999999999999 5789999999999999999999998 8865 666 68999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
++++.+
T Consensus 90 ~~a~~~ 95 (105)
T 2dh8_A 90 KPCTPR 95 (105)
T ss_dssp CCSCCS
T ss_pred EEccCC
Confidence 998765
No 262
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=116.22 Aligned_cols=75 Identities=27% Similarity=0.556 Sum_probs=68.0
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI-NGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~~g~~~~l~v 178 (354)
...++|||+||+.++++++|+++|++||.|+++++.++ +|||||+|++.++|.+|++.| ++.. ++| +.|+|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~-~~g--~~l~v 81 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLI-VNG--RRLNV 81 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCE-ETT--EECCE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCee-ECC--CEEEE
Confidence 34689999999999999999999999999999999975 899999999999999999999 8765 666 78999
Q ss_pred EecC
Q 018554 179 KWAD 182 (354)
Q Consensus 179 ~~a~ 182 (354)
+||+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 263
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=122.74 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=71.8
Q ss_pred ccceEEEecCCCCC------CHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCce
Q 018554 101 LEHKLFIGMLPKNV------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (354)
Q Consensus 101 ~~~~l~V~~l~~~~------t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~ 174 (354)
..++|||+|||+.+ |+++|+++|++||.|.+|.|. ..++.++|||||+|.+.++|.+|++.|||.. ++| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~-~~g--~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK-LDK--Q 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE-CST--T
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc-cCC--C
Confidence 36799999999999 789999999999999999998 4678899999999999999999999999976 666 5
Q ss_pred -eEEEEecCCh
Q 018554 175 -PLVVKWADTE 184 (354)
Q Consensus 175 -~l~v~~a~~~ 184 (354)
.|+|+|++..
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 7999998653
No 264
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=2.7e-16 Score=129.05 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
.....+|||+||++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..+. +..+.|+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-g~g~~L~ 117 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIY-NACCTLR 117 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSS-SSCSCEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEec-CCCcEEE
Confidence 445567999999999999999999999999999998754 36789999999999999999999998754 3358899
Q ss_pred eecccccc
Q 018554 91 VKYADGEL 98 (354)
Q Consensus 91 v~~~~~~~ 98 (354)
|.|++.+.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99987653
No 265
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=120.37 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=70.7
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||++++|+++|+++|++||.| +++++.++.++|||||+|.+.++|++|++.||+.. ++| +.|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~ 86 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKRE-IEG--RAIRLE 86 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEE-ETT--EEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCE-eCC--eEEEEE
Confidence 346899999999999999999999999977 67777788899999999999999999999999976 555 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 87 ~a~~~ 91 (101)
T 2fc9_A 87 LQGPR 91 (101)
T ss_dssp ECSSC
T ss_pred EcCCC
Confidence 99765
No 266
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=2.3e-16 Score=122.33 Aligned_cols=78 Identities=18% Similarity=0.380 Sum_probs=68.4
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 10 SSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~-~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
.....++|||+|||++ +++++|+++|++||.|.+|.+ ++|||||+|.+.++|++|++.|++.. +.+ +.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~ 91 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRV-LAG--QT 91 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCE-ETT--EE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCE-ECC--eE
Confidence 3445689999999999 999999999999999999988 57899999999999999999998866 555 78
Q ss_pred ceeecccccc
Q 018554 89 LQVKYADGEL 98 (354)
Q Consensus 89 l~v~~~~~~~ 98 (354)
|+|.+++...
T Consensus 92 l~V~~a~~~~ 101 (110)
T 1wf1_A 92 LDINMAGEPK 101 (110)
T ss_dssp CCEEESCCCC
T ss_pred EEEEECCCCC
Confidence 8999887443
No 267
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.1e-16 Score=119.47 Aligned_cols=79 Identities=16% Similarity=0.356 Sum_probs=66.7
Q ss_pred cCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 9 KSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
.+..+.++|||+|||. ++++++|+++|++||.|.+|.+. +|||||+|.+.++|++|++.|++.. +.+ +
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 73 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEM-NFG--K 73 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSS-CBT--T
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCe-eCC--c
Confidence 3566889999999998 99999999999999999999884 6899999999999999999998876 445 7
Q ss_pred cceeecccccc
Q 018554 88 PLQVKYADGEL 98 (354)
Q Consensus 88 ~l~v~~~~~~~ 98 (354)
.|+|.+++.+.
T Consensus 74 ~l~V~~a~~~~ 84 (96)
T 2kvi_A 74 KLILEVSSSNA 84 (96)
T ss_dssp TBCEEEEECCC
T ss_pred EEEEEEcCcCC
Confidence 78888876543
No 268
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=123.44 Aligned_cols=83 Identities=25% Similarity=0.450 Sum_probs=72.4
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCC-eeEEEEe-eC-CCCCcceEEEEEeCCHHHHHHHHHHhC-CCcccCCCceeE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQIL-RG-SQQTSKGCAFLKYETKEQALAALEAIN-GKHKMEGSSVPL 176 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~-v~~i~i~-~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~~g~~~~l 176 (354)
..++|||+||++++|+++|+++|++||. |.++.++ .+ .++.++|||||+|.+.++|.+|++.|+ |...++| +.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT--BCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC--CeE
Confidence 3578999999999999999999999998 9999998 56 467899999999999999999999995 4234666 689
Q ss_pred EEEecCChH
Q 018554 177 VVKWADTEK 185 (354)
Q Consensus 177 ~v~~a~~~~ 185 (354)
+|+||+++.
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999997653
No 269
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=121.70 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=69.8
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc---eeE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS---VPL 176 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~---~~l 176 (354)
...++|||+||++++|+++|+++|++||.|++|+|+.+ |||||+|++.++|++||+.||+.. ++|.. +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~-~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTK-FRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEE-EECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCC-ccCCcCcceEE
Confidence 34689999999999999999999999999999999976 899999999999999999999987 55422 789
Q ss_pred EEEecCCh
Q 018554 177 VVKWADTE 184 (354)
Q Consensus 177 ~v~~a~~~ 184 (354)
+|++|+.+
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99999874
No 270
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=123.85 Aligned_cols=81 Identities=23% Similarity=0.405 Sum_probs=73.3
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||++++|+++|+++|+.||.|++|.|+++ .++.++|||||+|.+.++|.+|++. ++.. ++| +.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS-IDG--RVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE-ETT--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE-ECC--EEEEE
Confidence 34689999999999999999999999999999999998 5789999999999999999999987 8865 666 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
+++..+
T Consensus 101 ~~a~~~ 106 (116)
T 1x4b_A 101 KRAVAR 106 (116)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 998765
No 271
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=2e-16 Score=121.15 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=70.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
......++|||+|||.++|+++|+++|++||.|.+|.+++ |||||+|.+.++|++|++.||+.. +.+ +.
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 74 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKD-LEG--EN 74 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEE-ETT--EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCc-cCC--CE
Confidence 4456789999999999999999999999999999999873 499999999999999999998876 555 88
Q ss_pred ceeeccccccc
Q 018554 89 LQVKYADGELE 99 (354)
Q Consensus 89 l~v~~~~~~~~ 99 (354)
|+|.+++.+..
T Consensus 75 l~v~~a~~~~~ 85 (103)
T 2dgu_A 75 IEIVFAKPPDQ 85 (103)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEcCCCcc
Confidence 99999876544
No 272
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=2.4e-16 Score=129.37 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=69.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
..+|||+||++.+|+++|+++|++||+|++|.|+.++ +++||||+|++.++|++|++.|||..+.+ ..+.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEEEEe
Confidence 4579999999999999999999999999999998653 47899999999999999999999988543 3378999999
Q ss_pred CCh
Q 018554 182 DTE 184 (354)
Q Consensus 182 ~~~ 184 (354)
+.+
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 765
No 273
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.5e-16 Score=118.68 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=71.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||++++++++|+++|++||.|++|.|+++ .++.++|||||+|++.++|.+|++. +. .++| +.|.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g--~~l~v 87 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RH-MIDG--RWCDC 87 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CE-EETT--EEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CC-eeCC--eEEEE
Confidence 34678999999999999999999999999999999999 4799999999999999999999983 43 4666 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
+|++.+
T Consensus 88 ~~a~~~ 93 (103)
T 2cqg_A 88 KLPNSK 93 (103)
T ss_dssp ECCCTT
T ss_pred EecCCC
Confidence 998765
No 274
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.3e-17 Score=124.64 Aligned_cols=78 Identities=28% Similarity=0.405 Sum_probs=68.1
Q ss_pred cccceEEEecCCCC-CCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-ccCCCceeEE
Q 018554 100 RLEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KMEGSSVPLV 177 (354)
Q Consensus 100 ~~~~~l~V~~l~~~-~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~~g~~~~l~ 177 (354)
...++|||+||+++ +|+++|+++|++||.|.+|.|++. ||||||+|++.++|.+|++.|++.. .++| +.|.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G--r~l~ 95 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQG--RCVK 95 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSS--SCCE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--EEEE
Confidence 34789999999998 999999999999999999999864 8999999999999999999987532 3566 6889
Q ss_pred EEecCCh
Q 018554 178 VKWADTE 184 (354)
Q Consensus 178 v~~a~~~ 184 (354)
|.|++.+
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9998654
No 275
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=3.4e-16 Score=118.54 Aligned_cols=79 Identities=18% Similarity=0.375 Sum_probs=68.1
Q ss_pred ccCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 8 KKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
.....+.++|||+|||. ++++++|+++|++||.|.+|.+. +|||||+|.+.++|++|++.+++.. +.+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~-~~g-- 84 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEM-NFG-- 84 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSE-ETT--
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34566889999999998 99999999999999999999883 6899999999999999999998866 445
Q ss_pred ccceeeccccc
Q 018554 87 SPLQVKYADGE 97 (354)
Q Consensus 87 ~~l~v~~~~~~ 97 (354)
+.|+|.+++.+
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 78899888654
No 276
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=2.9e-16 Score=124.49 Aligned_cols=80 Identities=21% Similarity=0.357 Sum_probs=73.3
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||+.++|+++|+++|++||.|++|.|+++ .++.++|||||+|.+.++|.+|+ .|||.. ++| +.|+|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV-FRG--RTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE-ETT--EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe-ECC--eEEEEE
Confidence 3689999999999999999999999999999999998 58899999999999999999999 799977 666 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++..
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98753
No 277
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-16 Score=118.35 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=71.6
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEF--ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~--G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
.+.......++|||+|||+++++++|+++|++| |.|.+|.+. +|||||+|.+.++|++|++.||+.. +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~-~~ 77 (99)
T 2cpd_A 7 GDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKV-LD 77 (99)
T ss_dssp CCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEE-ET
T ss_pred ccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCE-eC
Confidence 444556778999999999999999999999999 899998764 5699999999999999999998876 55
Q ss_pred CCCccceeeccccccc
Q 018554 84 GASSPLQVKYADGELE 99 (354)
Q Consensus 84 g~~~~l~v~~~~~~~~ 99 (354)
+ +.|+|.+++.+..
T Consensus 78 g--~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 78 G--SPIEVTLAKPVDK 91 (99)
T ss_dssp T--EEEEEECCCCCCC
T ss_pred C--cEEEEEECCCCCC
Confidence 5 8899999876543
No 278
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=5.6e-16 Score=128.62 Aligned_cols=84 Identities=32% Similarity=0.550 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||.++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.++|.+|++.||+.. +.+....|
T Consensus 84 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~~~i 162 (167)
T 1fxl_A 84 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK-PSGATEPI 162 (167)
T ss_dssp GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CTTCSSCC
T ss_pred ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc-cCCCccce
Confidence 44567899999999999999999999999999999999999899999999999999999999999999876 67766778
Q ss_pred eeecc
Q 018554 90 QVKYA 94 (354)
Q Consensus 90 ~v~~~ 94 (354)
+|+||
T Consensus 163 ~v~~A 167 (167)
T 1fxl_A 163 TVKFA 167 (167)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88875
No 279
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=122.77 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=68.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
+..++|||+||++++++++|+++|++||.|.+|.|.+. ++||||+|.+.++|.+|++.|||.. ++| +.|.|.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~ 79 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-----GITAIVEFLEPLEARKAFRHLAYSK-FHH--VPLYLE 79 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-----SSCEEEEESCHHHHHHHHHHHTTCB-SSS--SBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCE-ECC--eEEEEE
Confidence 34679999999999999999999999999999998853 8899999999999999999999987 665 678999
Q ss_pred ecCC
Q 018554 180 WADT 183 (354)
Q Consensus 180 ~a~~ 183 (354)
||..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 9864
No 280
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=1.5e-16 Score=118.49 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=62.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
......++|||+|||+++||++|+++|++||.|.+|+|++| +||||||+|.+.++|++ +++.. +.+..+.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~-~~~~g~~ 75 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGED-LIIKGIS 75 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCE-EEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCC-cccCCEE
Confidence 34567899999999999999999999999999999999875 78999999999999984 44543 3444588
Q ss_pred ceeeccccccc
Q 018554 89 LQVKYADGELE 99 (354)
Q Consensus 89 l~v~~~~~~~~ 99 (354)
+.|+++.++..
T Consensus 76 v~v~~a~~k~~ 86 (89)
T 3d2w_A 76 VHISNAEPKHN 86 (89)
T ss_dssp EEEEECC----
T ss_pred EEEEEcCCCCc
Confidence 88888876544
No 281
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=117.62 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=69.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
+.....++|||+|||+++++++|+++|++||.|.+| +.|+.+++ ||||+|.+.++|++|++ |++.. +.+ +.
T Consensus 3 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~-~~g--~~ 73 (94)
T 2e5g_A 3 SGSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHS-LGG--HR 73 (94)
T ss_dssp SCCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCE-ETT--EE
T ss_pred CccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeE-ECC--EE
Confidence 345567899999999999999999999999999987 77776666 99999999999999999 98866 555 78
Q ss_pred ceeecccccc
Q 018554 89 LQVKYADGEL 98 (354)
Q Consensus 89 l~v~~~~~~~ 98 (354)
|.|.++..+.
T Consensus 74 l~V~~a~~~~ 83 (94)
T 2e5g_A 74 LRVRPREQKE 83 (94)
T ss_dssp CCCBCSCCSC
T ss_pred EEEEECCcCC
Confidence 8888776543
No 282
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=123.55 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=72.8
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCC---eeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGT---IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~---v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
..++|||+||++++|+++|+++|+.||. |.+|+|+++..++++|||||+|.+.++|.+|++ +|+.. ++| +.|+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~g--r~i~ 85 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMY-MGQ--RYVE 85 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCC-SSS--SCCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcce-eCC--eEEE
Confidence 4678999999999999999999999998 899999999779999999999999999999999 89966 666 5788
Q ss_pred EEecCChH
Q 018554 178 VKWADTEK 185 (354)
Q Consensus 178 v~~a~~~~ 185 (354)
|.++..+.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 88887543
No 283
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=118.22 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=71.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV-NIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i-~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
......++|||+|||+++++++|+++|++||.|.+| .|++|+.+++ |||+|.+.++|++|++.||+.. +.+ +
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~-~~g--~ 82 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQ-LEN--F 82 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCB-CSS--C
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCE-ECC--c
Confidence 344567999999999999999999999999999999 5888876543 9999999999999999998876 444 8
Q ss_pred cceeeccccc
Q 018554 88 PLQVKYADGE 97 (354)
Q Consensus 88 ~l~v~~~~~~ 97 (354)
.|+|.++..+
T Consensus 83 ~l~V~~a~~~ 92 (96)
T 2e44_A 83 TLKVAYIPDE 92 (96)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEcCcc
Confidence 8999988765
No 284
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.6e-16 Score=121.18 Aligned_cols=74 Identities=32% Similarity=0.609 Sum_probs=68.1
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.++|||+||+.++++++|+++|++||.|+++++.+ ++|||||+|.+.++|.+|++.|||.. ++| +.|+|+|+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~~a 98 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFP-FQG--RNLRTGWG 98 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCE-ETT--EECCCCBC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEEec
Confidence 57999999999999999999999999999999984 38999999999999999999999987 565 78999998
Q ss_pred CC
Q 018554 182 DT 183 (354)
Q Consensus 182 ~~ 183 (354)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 285
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.9e-16 Score=128.86 Aligned_cols=84 Identities=30% Similarity=0.517 Sum_probs=77.4
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
......++|||+|||.++++++|+++|++||.|.++.+++|+.+++++|||||+|.+.++|.+|++.||+.. +.+ +.
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~ 158 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LNG--RP 158 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-cCC--cE
Confidence 455678899999999999999999999999999999999999999999999999999999999999998877 555 88
Q ss_pred ceeeccc
Q 018554 89 LQVKYAD 95 (354)
Q Consensus 89 l~v~~~~ 95 (354)
|+|.|++
T Consensus 159 i~v~~a~ 165 (166)
T 3md3_A 159 LRINWAA 165 (166)
T ss_dssp CEEEESC
T ss_pred EEEEecC
Confidence 9998875
No 286
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=7.9e-16 Score=128.01 Aligned_cols=85 Identities=34% Similarity=0.541 Sum_probs=77.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
......++|||+|||.++++++|+++|++||.|.++.+++|+.+++++|||||+|.+.++|.+|++.||+.. +.+..+.
T Consensus 84 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~~~ 162 (168)
T 1b7f_A 84 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI-PEGGSQP 162 (168)
T ss_dssp SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CTTCSSC
T ss_pred cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE-ecCCCeE
Confidence 345678999999999999999999999999999999999999889999999999999999999999999876 5666788
Q ss_pred ceeecc
Q 018554 89 LQVKYA 94 (354)
Q Consensus 89 l~v~~~ 94 (354)
|+|+|+
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 888875
No 287
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=116.27 Aligned_cols=75 Identities=24% Similarity=0.481 Sum_probs=68.1
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||++++|+++|+++|++||.|++|.++ ++||||+|++.++|.+|++.||+.. ++| +.|+|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~ 77 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTE-FQG--KRMHVQ 77 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEE-ETT--EEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCe-eCC--cEEEEE
Confidence 346899999999999999999999999999999998 4499999999999999999999987 555 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 99765
No 288
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=3.2e-16 Score=121.13 Aligned_cols=79 Identities=33% Similarity=0.644 Sum_probs=70.3
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
....++|||+||+.++|+++|+++|++||.|++|.++ +|||||+|.+.++|++|++.|||.. ++| +.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V 97 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKS-FAN--QPLEV 97 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEE
Confidence 3447899999999999999999999999999999998 7899999999999999999999987 565 78999
Q ss_pred EecCChHHH
Q 018554 179 KWADTEKER 187 (354)
Q Consensus 179 ~~a~~~~~~ 187 (354)
+|++....+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999876443
No 289
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5e-16 Score=115.85 Aligned_cols=74 Identities=31% Similarity=0.530 Sum_probs=67.8
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+||+.++|+++|+++|++||.|++|++. ++||||+|++.++|++|++.||+.. ++| +.|+|+|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~~ 76 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYK-LHG--VNINVEA 76 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCB-CSS--CBCEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCc-cCC--cEEEEEE
Confidence 36799999999999999999999999999999998 6799999999999999999999976 666 6899999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
++.+
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8765
No 290
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=121.96 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=68.6
Q ss_pred ccceEEE--ecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--cCCCceeE
Q 018554 101 LEHKLFI--GMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK--MEGSSVPL 176 (354)
Q Consensus 101 ~~~~l~V--~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~~g~~~~l 176 (354)
..++||| +||++++|+++|+++|++||+|++|.|..+ ||||||+|++.++|++|++.|||+.+ ..+..+.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 4678999 779999999999999999999999988754 89999999999999999999999864 23346899
Q ss_pred EEEecCC
Q 018554 177 VVKWADT 183 (354)
Q Consensus 177 ~v~~a~~ 183 (354)
.|.|++.
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 9999864
No 291
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=125.30 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=70.0
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCe----eEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTI----KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v----~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
.++|||+|||+++|++||+++|+.||.| .+|.|+++.+++++|||||+|++.++|++|++. |+.. +++ +.|+
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~-l~g--R~i~ 98 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDL-LGK--RYIE 98 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEE-SSS--CEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCe-eCC--eEEE
Confidence 5789999999999999999999999975 689999998999999999999999999999986 8755 776 5788
Q ss_pred EEecCCh
Q 018554 178 VKWADTE 184 (354)
Q Consensus 178 v~~a~~~ 184 (354)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 8877544
No 292
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=115.48 Aligned_cols=69 Identities=19% Similarity=0.385 Sum_probs=62.9
Q ss_pred cceEEEecCCCCC------CHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCC
Q 018554 102 EHKLFIGMLPKNV------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (354)
Q Consensus 102 ~~~l~V~~l~~~~------t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~ 172 (354)
+++|||+|||..+ ++++|+++|++||.|.++.+. ..++.++|||||+|.+.++|.+|++.|||.. ++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK-LDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCC-CSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcc-cCCc
Confidence 3689999999999 779999999999999999988 4678889999999999999999999999987 6664
No 293
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=7.4e-16 Score=121.31 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=67.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC-AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
..|||+||++.+|+++|+++|++||.|++|.|+.. +|| |||+|++.++|.+|++.|||.. +.|..+.|+|.||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~-i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGAD-IYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCC-CBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCE-ecCCCeEEEEEEe
Confidence 45789999999999999999999999999999763 376 9999999999999999999988 5555578999999
Q ss_pred CCh
Q 018554 182 DTE 184 (354)
Q Consensus 182 ~~~ 184 (354)
+.+
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 765
No 294
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=6.8e-16 Score=122.06 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=68.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC-AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
-+|||+||++.+|+++|+++|++||.|++|+|+.+. +|+ |||+|++.++|.+|++.|||..+.+ ..+.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET----TEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEEEEec
Confidence 468999999999999999999999999999988642 677 9999999999999999999998554 4589999999
Q ss_pred CCh
Q 018554 182 DTE 184 (354)
Q Consensus 182 ~~~ 184 (354)
+..
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 765
No 295
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=4.1e-16 Score=116.09 Aligned_cols=77 Identities=18% Similarity=0.397 Sum_probs=63.8
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
...+|||+||++++|+++|+++|++||.|++|+|+++ +||||||+|++.++|++ +++.. +.++.+.|.|++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~-~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGED-LIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCE-EEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCC-cccCCEEEEEEE
Confidence 3689999999999999999999999999999999985 68999999999999883 56654 444568999999
Q ss_pred cCChHH
Q 018554 181 ADTEKE 186 (354)
Q Consensus 181 a~~~~~ 186 (354)
|.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 987654
No 296
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=119.45 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=70.9
Q ss_pred cccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCcee
Q 018554 96 GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (354)
Q Consensus 96 ~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~ 175 (354)
.......++|||+||+.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|||.. ++| +.
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 82 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE-IDG--RS 82 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEE-ETT--EE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--eE
Confidence 3344557899999999999999999999999988766 4567789999999999999999999999976 666 78
Q ss_pred EEEEecCCh
Q 018554 176 LVVKWADTE 184 (354)
Q Consensus 176 l~v~~a~~~ 184 (354)
|.|.|+..+
T Consensus 83 l~v~~a~~~ 91 (96)
T 1fjc_A 83 VSLYYTGEK 91 (96)
T ss_dssp EEEEECSSS
T ss_pred EEEEEcCCC
Confidence 999998764
No 297
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=125.75 Aligned_cols=79 Identities=29% Similarity=0.496 Sum_probs=71.9
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||+.++++++|+++|++||.|++++|+++ .++.++|||||+|++.++|++|++.||+.. ++| +.|+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v 137 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--RTIRV 137 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE-ETT--EEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEE
Confidence 34789999999999999999999999999999999998 578999999999999999999999999976 666 68899
Q ss_pred Eec
Q 018554 179 KWA 181 (354)
Q Consensus 179 ~~a 181 (354)
+||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 298
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=120.75 Aligned_cols=77 Identities=22% Similarity=0.511 Sum_probs=70.8
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||+.++++++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|++.|||.. ++| +.|+|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~ 94 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTT-IEG--HVVKCY 94 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCE-ECC--cEEEEE
Confidence 34689999999999999999999999999999999987 8999999999999999999999976 666 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++..
T Consensus 95 ~a~~~ 99 (109)
T 1x4g_A 95 WGKES 99 (109)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 99765
No 299
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=120.44 Aligned_cols=75 Identities=27% Similarity=0.495 Sum_probs=69.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecC
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 182 (354)
++|||+||++++|+++|+++|++||.|++|.++++ ++|||||+|++.++|++|++.||+.. ++| +.|+|+|++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKV-ICG--SRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSC-SSS--CCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCe-ECC--cEEEEEEcc
Confidence 47999999999999999999999999999999987 68999999999999999999999986 666 579999987
Q ss_pred Ch
Q 018554 183 TE 184 (354)
Q Consensus 183 ~~ 184 (354)
.+
T Consensus 74 ~~ 75 (101)
T 2hvz_A 74 GM 75 (101)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 300
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.5e-16 Score=116.94 Aligned_cols=83 Identities=23% Similarity=0.346 Sum_probs=71.0
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 018554 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~ 85 (354)
..++...+.++|||+|| ++++++|+++|++||+|.+|.|. +++|||||+|.+.++|++||+.||+.. +.+
T Consensus 7 ~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g- 76 (97)
T 1x5p_A 7 GERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQ-VES- 76 (97)
T ss_dssp SCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEE-ETT-
T ss_pred CccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCe-ECC-
Confidence 33455667899999996 99999999999999999999984 477899999999999999999998876 444
Q ss_pred Cccceeeccccccc
Q 018554 86 SSPLQVKYADGELE 99 (354)
Q Consensus 86 ~~~l~v~~~~~~~~ 99 (354)
+.|+|.+++.+..
T Consensus 77 -~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 77 -VQLKVNIARKQPM 89 (97)
T ss_dssp -EEEEEECCSSCCC
T ss_pred -eEEEEEECCCCCC
Confidence 8899999876544
No 301
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.6e-15 Score=119.35 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=66.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecc
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC-CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~-aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~ 94 (354)
.|||+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|++|++.|||..+ .+..+.|+|.++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i-~g~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADI-YAGCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCC-BTTBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCeEEEEEEe
Confidence 4679999999999999999999999999999752 276 99999999999999999999884 444568999998
Q ss_pred cccc
Q 018554 95 DGEL 98 (354)
Q Consensus 95 ~~~~ 98 (354)
+.+.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7653
No 302
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6e-16 Score=115.44 Aligned_cols=75 Identities=25% Similarity=0.457 Sum_probs=68.0
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||++++|+++|+++|++||.|++|+++ ++||||+|.+.++|++|++.||+.. ++| +.|+|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~ 76 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKE-VKG--KRINVE 76 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEE
Confidence 346899999999999999999999999999999998 4499999999999999999999977 565 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++..
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98765
No 303
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=1.7e-16 Score=120.15 Aligned_cols=83 Identities=25% Similarity=0.483 Sum_probs=73.3
Q ss_pred ccceEEEecCCCCCCHHHHH----HhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeE
Q 018554 101 LEHKLFIGMLPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~----~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l 176 (354)
..++|||+||+.++++++|+ ++|++||.|.+|.+.+ ++.++|||||+|.+.++|.+|++.|||.. ++| +.|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l 81 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYD--KPM 81 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCE-ECC--cEE
Confidence 46799999999999999999 9999999999999884 46678999999999999999999999977 555 789
Q ss_pred EEEecCChHHHH
Q 018554 177 VVKWADTEKERQ 188 (354)
Q Consensus 177 ~v~~a~~~~~~~ 188 (354)
.|+|++.+....
T Consensus 82 ~v~~a~~~~~~~ 93 (97)
T 1nu4_A 82 RIQYAKTDSDII 93 (97)
T ss_dssp EEEECSSCCTHH
T ss_pred EEEEccCCCccc
Confidence 999998765443
No 304
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=8.5e-16 Score=116.32 Aligned_cols=74 Identities=27% Similarity=0.514 Sum_probs=67.6
Q ss_pred ccceEEEecCCC-CCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~-~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||++ ++++++|+++|++||.|.++++. +|||||+|++.++|.+|++.|||.. ++| +.|+|+
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~ 90 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEM-NFG--KKLILE 90 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSE-ETT--EECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEE
Confidence 468999999998 99999999999999999999994 7899999999999999999999986 555 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 305
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=1.1e-15 Score=132.51 Aligned_cols=85 Identities=20% Similarity=0.331 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....++|||+|||.++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.||+.. +.+ +.|+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~-~~g--~~i~ 198 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFD-LGG--QYLR 198 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCB-CSS--SBCE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCE-eCC--cEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999999876 555 8899
Q ss_pred eecccccc
Q 018554 91 VKYADGEL 98 (354)
Q Consensus 91 v~~~~~~~ 98 (354)
|.++....
T Consensus 199 V~~a~~~~ 206 (216)
T 2qfj_A 199 VGKAVTPP 206 (216)
T ss_dssp EEECSSCS
T ss_pred EEEecCCC
Confidence 99887653
No 306
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=4.1e-16 Score=121.93 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=58.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
....++|||+|||+++++++|+++|++||+|.+|.|+.| |||||+|.+.++|++||+.||+.. +.+
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~-~~g 78 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTK-FRS 78 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCB-CCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 356799999999999999999999999999999999876 799999999999999999998877 555
No 307
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=115.66 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=68.0
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccC--CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~--G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~ 177 (354)
...++|||+||++++|+++|+++|++| |.|.++++. ++||||+|.+.++|.+|++.||+.. ++| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~ 82 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKV-LDG--SPIE 82 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEE-ETT--EEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCE-eCC--cEEE
Confidence 346899999999999999999999999 999999886 6799999999999999999999986 565 7899
Q ss_pred EEecCCh
Q 018554 178 VKWADTE 184 (354)
Q Consensus 178 v~~a~~~ 184 (354)
|+|++.+
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9999765
No 308
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=8.9e-17 Score=130.76 Aligned_cols=88 Identities=23% Similarity=0.393 Sum_probs=72.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE--E---eeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVN--I---IKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~--i---~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
......++|||+|||+++|+++|+++|++||.|..|. + ++...+++++|||||+|.+.++|.+|++.||+.. +.
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~ 118 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV-LF 118 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE-ET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE-eC
Confidence 3456789999999999999999999999999987741 1 1112368999999999999999999999998877 55
Q ss_pred CCCccceeeccccccc
Q 018554 84 GASSPLQVKYADGELE 99 (354)
Q Consensus 84 g~~~~l~v~~~~~~~~ 99 (354)
+ +.|.|.+++....
T Consensus 119 g--~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 G--KPMVVQFARSARP 132 (143)
T ss_dssp T--EECEEEECCCSCC
T ss_pred C--cEEEEEECCCCCC
Confidence 5 8899999876443
No 309
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.9e-16 Score=117.97 Aligned_cols=75 Identities=27% Similarity=0.486 Sum_probs=66.1
Q ss_pred cccceEEEecCCC-CCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~-~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||++ ++++++|+++|++||.|++|.|. +|||||+|++.++|.+|++.||+.. ++| +.|.|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V 77 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEM-NFG--KKLIL 77 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSS-CBT--TTBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCe-eCC--cEEEE
Confidence 3468999999998 99999999999999999999995 7899999999999999999999986 566 46777
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
.|++..
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 777654
No 310
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.1e-16 Score=117.52 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=68.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+||++++|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|++.|||.. ++| +.|+|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~ 89 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLR-LGT--DTLRVA 89 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCC-SSS--SCCEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEE
Confidence 3468999999999999999999999999997 666654 568999999999999999999999987 666 579999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98765
No 311
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=1.3e-15 Score=118.98 Aligned_cols=79 Identities=24% Similarity=0.473 Sum_probs=70.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.++|||+||+.++|+++|+++|+.||.|.+|.|+++ +.++|||||+|.+.++|.+|++.|||.. ++| +.|.|.|+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~~a 82 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFN-VSN--RYLVVLYY 82 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCB-SSS--CBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEEEe
Confidence 578999999999999999999999999999999975 3458999999999999999999999987 666 68999999
Q ss_pred CChH
Q 018554 182 DTEK 185 (354)
Q Consensus 182 ~~~~ 185 (354)
+...
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8643
No 312
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=9.6e-16 Score=128.08 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccc
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l 89 (354)
.....++|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|.+|++.||+.. +.+ +.|
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l 166 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ-LGD--KKL 166 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE-ECC--eEE
Confidence 34557999999999999999999999999999999999999899999999999999999999999998876 555 788
Q ss_pred eeecc
Q 018554 90 QVKYA 94 (354)
Q Consensus 90 ~v~~~ 94 (354)
.|+|+
T Consensus 167 ~V~~A 171 (172)
T 2g4b_A 167 LVQRA 171 (172)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88876
No 313
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=7.7e-16 Score=117.89 Aligned_cols=75 Identities=28% Similarity=0.541 Sum_probs=68.1
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+||++++|+++|+++|++||.|++|+|+ ++||||+|++.++|.+|++.||+.. ++| +.|.|+|
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~ 79 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKD-LEG--ENIEIVF 79 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEE-ETT--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCc-cCC--CEEEEEE
Confidence 35789999999999999999999999999999998 5699999999999999999999986 665 7899999
Q ss_pred cCChH
Q 018554 181 ADTEK 185 (354)
Q Consensus 181 a~~~~ 185 (354)
++.+.
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 97653
No 314
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=4.3e-16 Score=115.72 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
...++|||+|||+++++++|+++|++| .|.+|++. +++|||||+|.+.++|++|++.+|+.. +.+ +.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~V 72 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYS-FRG--KDLIV 72 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEE-ETT--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCe-ECC--cEEEE
Confidence 467899999999999999999999999 99999884 588999999999999999999998876 555 88999
Q ss_pred ecccccc
Q 018554 92 KYADGEL 98 (354)
Q Consensus 92 ~~~~~~~ 98 (354)
.++..+.
T Consensus 73 ~~a~~~~ 79 (88)
T 1wg1_A 73 QLQPTDA 79 (88)
T ss_dssp EECCCCC
T ss_pred EEcCCCc
Confidence 9886543
No 315
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=7.4e-16 Score=129.72 Aligned_cols=81 Identities=26% Similarity=0.449 Sum_probs=74.8
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+||++++++++|+++|++||.|++|.|+.+.++.++|||||+|++.++|.+|++.||+.. ++| +.|+|+|
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~-l~G--r~l~V~~ 163 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPMDIQL 163 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCB-CSS--SBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCE-ECC--EEEEEEE
Confidence 3689999999999999999999999999999999999889999999999999999999999999976 666 6789999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
|...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8765
No 316
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.8e-16 Score=119.93 Aligned_cols=80 Identities=25% Similarity=0.466 Sum_probs=69.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCe----eEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCcee
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTI----KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v----~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~ 175 (354)
...++|||+||++++|+++|+++|+.||.| ..+++. ++.++|||||+|.+.++|.+|++.||+.. ++| +.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~ 96 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYK-LYG--KI 96 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCB-CSS--CB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCE-eCC--cE
Confidence 346899999999999999999999999998 445544 67789999999999999999999999977 565 68
Q ss_pred EEEEecCChH
Q 018554 176 LVVKWADTEK 185 (354)
Q Consensus 176 l~v~~a~~~~ 185 (354)
|.|+|++.+.
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 9999997653
No 317
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=2.3e-16 Score=120.57 Aligned_cols=79 Identities=22% Similarity=0.438 Sum_probs=71.1
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+||++++++++|+++|+.||.|++|+|+++.++.++|||||+|++.++|.+|++ ++.. ++| +.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~-~~g--~~l~v~~ 82 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQIN-FHG--KKLKLGP 82 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCE-ETT--EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCe-ECC--EEEEEEE
Confidence 4689999999999999999999999999999999999989999999999999999999998 7755 666 6788888
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
+..+
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 7654
No 318
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=8e-16 Score=121.65 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC-CFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~-aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
..--+|||+||++.+|+++|+++|++||+|.+|+++.+ .+|| |||+|.+.++|++|++.|||..+.. ..+.|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~Lr 99 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLR 99 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEE
Confidence 44567889999999999999999999999999998764 3578 9999999999999999999988544 357899
Q ss_pred eecccccc
Q 018554 91 VKYADGEL 98 (354)
Q Consensus 91 v~~~~~~~ 98 (354)
|.|++.+.
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99987653
No 319
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.62 E-value=8.5e-16 Score=119.10 Aligned_cols=73 Identities=32% Similarity=0.570 Sum_probs=67.0
Q ss_pred cceEEEecCCCC-CCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~-~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+||+++ +++++|+++|++||.|++|.| +++||||+|++.++|++|++.||+.. ++| +.|+|+|
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V~~ 96 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRV-LAG--QTLDINM 96 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCE-ETT--EECCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEEE
Confidence 579999999999 999999999999999999999 38999999999999999999999977 565 7899999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
++..
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 320
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=1.4e-15 Score=130.06 Aligned_cols=86 Identities=23% Similarity=0.390 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....++|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|.+|++.||+.. +.+ +.|+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 187 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ-LGD--KKLL 187 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 3677999999999999999999999999999999999999899999999999999999999999998876 555 8899
Q ss_pred eeccccccc
Q 018554 91 VKYADGELE 99 (354)
Q Consensus 91 v~~~~~~~~ 99 (354)
|.+++.+..
T Consensus 188 v~~a~~~~~ 196 (198)
T 2yh0_A 188 VQRASVGAK 196 (198)
T ss_dssp EEESCCCCC
T ss_pred EEECCCCCC
Confidence 999876543
No 321
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=2.2e-16 Score=113.47 Aligned_cols=74 Identities=18% Similarity=0.385 Sum_probs=65.9
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
+|||+|||.++++++|+++|++||.|.++.+.++ .++.++|||||+|++.++|.+|++. ++.. ++| +.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN-VGL--SKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC-BTT--BCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe-ECC--EEEEEEEC
Confidence 5999999999999999999999999999999988 4688999999999999999999985 7755 676 56777764
No 322
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=114.95 Aligned_cols=79 Identities=24% Similarity=0.446 Sum_probs=69.9
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
...++|||+||+.++|+++|+++|+.| .+|.++.+ .++.++|||||+|.+.++|++|++.||+.. ++| +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V 86 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE-IDG--NKVTL 86 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEE
Confidence 346899999999999999999999987 36778887 588899999999999999999999999987 665 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
+|++.+
T Consensus 87 ~~a~~~ 92 (102)
T 2fc8_A 87 DWAKPK 92 (102)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999765
No 323
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.1e-15 Score=146.28 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....++|||+|||.++|+++|+++|++||.|..|.|+.|+.|++++|||||+|.+.++|.+||+.||+.. |.+ +.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~-i~g--r~i~ 175 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK-IDG--RRVL 175 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999998876 555 7888
Q ss_pred eeccccc
Q 018554 91 VKYADGE 97 (354)
Q Consensus 91 v~~~~~~ 97 (354)
|.++...
T Consensus 176 V~~a~~~ 182 (437)
T 3pgw_S 176 VDVERGR 182 (437)
T ss_pred EEEeCCC
Confidence 8888654
No 324
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=109.94 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=65.3
Q ss_pred CCCCCe-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 11 SEERVK-LFVGQVPKHMTEAQ----LLAMFKEF-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 11 ~~~~~~-lfVg~Lp~~~te~~----L~~~F~~~-G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
..++.+ |||+|||.++++++ |+++|++| |+|.+| |+ |+|||+|.+.++|.+|++.|++..+ .+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l-~g 73 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV-FG 73 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS-SS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc-CC
Confidence 345566 99999999999998 55899999 599998 34 9999999999999999999999884 45
Q ss_pred CCccceeecccccccc
Q 018554 85 ASSPLQVKYADGELER 100 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~~ 100 (354)
+.++|++++.+.+.
T Consensus 74 --r~i~v~~A~~~sd~ 87 (96)
T 2diu_A 74 --NRIIVSFTPKNREL 87 (96)
T ss_dssp --SCCEEESSCCSCCC
T ss_pred --ceEEEEecCCCcce
Confidence 89999999876553
No 325
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.7e-15 Score=112.54 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=66.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.++|||+|||+++++++|+++|++| .|+++++. .++|||||+|.+.++|++|++.|||.. ++| +.|+|+|+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~V~~a 75 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYS-FRG--KDLIVQLQ 75 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEE-ETT--EEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCe-ECC--cEEEEEEc
Confidence 5789999999999999999999999 99999985 468999999999999999999999987 565 78999998
Q ss_pred CCh
Q 018554 182 DTE 184 (354)
Q Consensus 182 ~~~ 184 (354)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 326
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.9e-17 Score=127.41 Aligned_cols=84 Identities=25% Similarity=0.416 Sum_probs=75.0
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeE--------EEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccC
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD--------LQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~--------i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 170 (354)
...++|||+||+.++++++|+++|++||.|.+ |+|+.+ .++.++|||||+|.+.++|.+|++.||+.. ++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE-FS 83 (116)
Confidence 34678999999999999999999999999999 899988 578899999999999999999999999976 66
Q ss_pred CCceeEEEEecCChHH
Q 018554 171 GSSVPLVVKWADTEKE 186 (354)
Q Consensus 171 g~~~~l~v~~a~~~~~ 186 (354)
| +.|+|+|++.+..
T Consensus 84 g--~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 G--NPIKVSFATRRAD 97 (116)
Confidence 5 6899999876543
No 327
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=6.7e-16 Score=122.08 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=68.1
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCee--EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIK--DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~--~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
..++|||+|||+++|+++|+++|+.| .|+ +|+|++|+.++++|||||+|++.++|++||+. ++.. ++| +.|+|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~-l~g--R~I~V 115 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKER-IGH--RYIEV 115 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCC-BTT--BCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCE-ECC--EEEEE
Confidence 35789999999999999999999999 676 89999998899999999999999999999985 6644 777 56777
Q ss_pred EecCC
Q 018554 179 KWADT 183 (354)
Q Consensus 179 ~~a~~ 183 (354)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 77753
No 328
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=1.9e-15 Score=129.07 Aligned_cols=85 Identities=25% Similarity=0.402 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....++|||+|||.++|+++|+++|++||.|.+|.|++|+.+++++|||||+|.+.++|.+|++. ++. .+.| +.|.
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~-~~~G--~~i~ 176 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH-TVNG--HNCE 176 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC-EETT--EECE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCc-EECC--EEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999987 454 4666 7889
Q ss_pred eeccccccc
Q 018554 91 VKYADGELE 99 (354)
Q Consensus 91 v~~~~~~~~ 99 (354)
|.++..+.+
T Consensus 177 v~~a~~k~~ 185 (196)
T 1l3k_A 177 VRKALSKQE 185 (196)
T ss_dssp EEECC----
T ss_pred EEecCChhH
Confidence 988876654
No 329
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.60 E-value=4.5e-15 Score=128.88 Aligned_cols=83 Identities=25% Similarity=0.456 Sum_probs=74.4
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||++++|+++|+++|++||+|++|+|++| .++.++|||||+|.+.++|.+|++.+|+.. +.| +.|++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g--~~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKG--KPVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCC--cccccc
Confidence 3578999999999999999999999999999999998 479999999999999999999999999976 555 688888
Q ss_pred ecCChHH
Q 018554 180 WADTEKE 186 (354)
Q Consensus 180 ~a~~~~~ 186 (354)
++.....
T Consensus 91 ~~~~~~~ 97 (213)
T 4f02_A 91 WSQRDPS 97 (213)
T ss_dssp ECCCCTH
T ss_pred ccccccc
Confidence 8876543
No 330
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=6.6e-16 Score=125.58 Aligned_cols=85 Identities=25% Similarity=0.403 Sum_probs=70.9
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEE------EEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL------QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i------~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 173 (354)
...++|||+||++++|+++|+++|+.||.|..+ .+....++.++|||||+|.+.++|.+|++.|||.. ++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~g-- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV-LFG-- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE-ETT--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE-eCC--
Confidence 346899999999999999999999999998764 22222467889999999999999999999999987 555
Q ss_pred eeEEEEecCChHHH
Q 018554 174 VPLVVKWADTEKER 187 (354)
Q Consensus 174 ~~l~v~~a~~~~~~ 187 (354)
+.|.|.||+....+
T Consensus 120 ~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 120 KPMVVQFARSARPK 133 (143)
T ss_dssp EECEEEECCCSCC-
T ss_pred cEEEEEECCCCCCc
Confidence 78999999765433
No 331
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=9.6e-16 Score=127.45 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcccee
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v 91 (354)
...++|||+|||.++++++|+++|++||.|.+|.+++|+.+++++|||||+|.+.++|.+|++ +++.. +.| +.|+|
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~-~~g--~~i~V 160 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID-FKD--RKIEI 160 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC-SSS--SCEEE
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE-eCC--eEEEE
Confidence 356799999999999999999999999999999999999999999999999999999999998 65544 555 88999
Q ss_pred eccccc
Q 018554 92 KYADGE 97 (354)
Q Consensus 92 ~~~~~~ 97 (354)
.+++++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 998764
No 332
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.8e-15 Score=112.09 Aligned_cols=75 Identities=31% Similarity=0.495 Sum_probs=66.8
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+|| ++|+++|+++|++||.|++|.|. .++|||||+|++.++|.+|++.||+.. ++| +.|+|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~v~ 82 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQ-VES--VQLKVN 82 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEE-ETT--EEEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEE
Confidence 34689999996 89999999999999999999996 348999999999999999999999987 555 789999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++.+
T Consensus 83 ~a~~~ 87 (97)
T 1x5p_A 83 IARKQ 87 (97)
T ss_dssp CCSSC
T ss_pred ECCCC
Confidence 99765
No 333
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=114.08 Aligned_cols=75 Identities=25% Similarity=0.448 Sum_probs=65.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCC-eeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CcccCCCceeEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING-KHKMEGSSVPLVV 178 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~-v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~~g~~~~l~v 178 (354)
..++|||+||++++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ .. ++| +.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~-~~g--~~l~v 77 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVE-LHG--KIMEV 77 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCE-ETT--EECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCee-ECC--EEEEE
Confidence 3578999999999999999999999999 6666664 389999999999999999999999 65 666 78999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
+|++.+
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999765
No 334
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=2.8e-15 Score=117.16 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=65.0
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc---eeEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS---VPLV 177 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~---~~l~ 177 (354)
..++|||+||++++|+++|+++|++||+|++|.|+.+ |||||+|++.++|++||+.||+.. ++|+. ..|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~-~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTK-FRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCB-CCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCE-ECCcEeeeEEEE
Confidence 3689999999999999999999999999999999875 899999999999999999999987 67754 1267
Q ss_pred EEecCC
Q 018554 178 VKWADT 183 (354)
Q Consensus 178 v~~a~~ 183 (354)
|+.+..
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 776654
No 335
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-16 Score=120.82 Aligned_cols=79 Identities=24% Similarity=0.290 Sum_probs=69.6
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||+.++|+++|+++|++||.|.. .++.+ .++.++|||||+|++.++|.+|++ ||+.. ++| +.|+|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~-~~g--~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK-VFG--NEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCC-BTT--BCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcE-ECC--cEEEEE
Confidence 4679999999999999999999999999888 55555 578889999999999999999998 99977 565 689999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
+++.+
T Consensus 91 ~a~~~ 95 (101)
T 1fj7_A 91 KPKGR 95 (101)
T ss_dssp CCSCC
T ss_pred EcCCC
Confidence 98765
No 336
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.8e-16 Score=115.46 Aligned_cols=79 Identities=25% Similarity=0.305 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
....++|||+|||+++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|+ +.. +....+.|+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~----~~~-~~~~g~~l~ 71 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC----GED-LIIKGISVH 71 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTT----TCE-EEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHh----cCC-ceeCCEEEE
Confidence 346799999999999999999999999999999999875 7899999999999997643 333 333458888
Q ss_pred eeccccccc
Q 018554 91 VKYADGELE 99 (354)
Q Consensus 91 v~~~~~~~~ 99 (354)
|.++..+..
T Consensus 72 v~~a~~~~~ 80 (88)
T 1wf0_A 72 ISNAEPKHN 80 (88)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 888876544
No 337
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=5.1e-15 Score=113.48 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 11 SEERVKLFVGQVPK-----HMTEAQLLAMFKEFALVDEVNIIKDKTT-RASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~-----~~te~~L~~~F~~~G~v~~i~i~~d~~t-g~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
...+++|+|.||-. +.++++|+++|++||+|.+|.|++|+.+ ++++|||||+|.+.++|.+|++.||++. +.|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~-~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY-FGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE-ETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE-ECC
Confidence 45789999999952 3478999999999999999999999764 6899999999999999999999999977 555
Q ss_pred CCccceeecccc
Q 018554 85 ASSPLQVKYADG 96 (354)
Q Consensus 85 ~~~~l~v~~~~~ 96 (354)
+.|.|.+++.
T Consensus 84 --r~i~v~~a~~ 93 (105)
T 2pe8_A 84 --RVVKACFYNL 93 (105)
T ss_dssp --EECEEEECCH
T ss_pred --cEEEEEEcCH
Confidence 8899988864
No 338
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.9e-15 Score=115.75 Aligned_cols=81 Identities=15% Similarity=0.275 Sum_probs=69.5
Q ss_pred ceEEEecC----CCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCC----HHH----HHHHHH--HhCCCc
Q 018554 103 HKLFIGML----PKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYET----KEQ----ALAALE--AINGKH 167 (354)
Q Consensus 103 ~~l~V~~l----~~~~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV~f~~----~~~----A~~Ai~--~l~g~~ 167 (354)
.+|||+|| ++.+++++|+++|+.||+|.++.++.| .+|.++|||||+|.+ .++ |.+|++ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 999999999999999999999999999 489999999999996 333 788888 789976
Q ss_pred ccCCCceeEEEEecCChHH
Q 018554 168 KMEGSSVPLVVKWADTEKE 186 (354)
Q Consensus 168 ~~~g~~~~l~v~~a~~~~~ 186 (354)
++| +.|+|.+.+....
T Consensus 83 -I~G--r~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 -IMG--FKFEVILNKHSIL 98 (136)
T ss_dssp -ETT--EEEEEEECCTTHH
T ss_pred -ecC--cEEEEEECcccHH
Confidence 777 7888888775543
No 339
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=4.2e-15 Score=117.13 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=68.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
......++|||+|| ++++++|+++|++||+|.+|.+. +++|||||+|.+.++|++|++.|++.. +.+ +.
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~-~~g--~~ 102 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQ-VES--VQ 102 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCB-CSS--CB
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCE-ECC--eE
Confidence 34567899999996 79999999999999999999985 477899999999999999999998876 555 88
Q ss_pred ceeecccccc
Q 018554 89 LQVKYADGEL 98 (354)
Q Consensus 89 l~v~~~~~~~ 98 (354)
|+|.+++.+.
T Consensus 103 l~V~~a~~~~ 112 (121)
T 2bz2_A 103 LKVNIARKQP 112 (121)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEeCCCC
Confidence 9999887654
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=2.8e-15 Score=110.85 Aligned_cols=73 Identities=25% Similarity=0.401 Sum_probs=63.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~----G-------~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~ 79 (354)
..+.++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|++|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4568999999999999999999999999 8 9999998765 689999999999999999 99886
Q ss_pred ccCCCCCccceeec
Q 018554 80 KTLPGASSPLQVKY 93 (354)
Q Consensus 80 ~~~~g~~~~l~v~~ 93 (354)
. +.+ +.|+|..
T Consensus 76 ~-~~g--~~l~V~r 86 (87)
T 2hzc_A 76 I-FQG--QSLKIRR 86 (87)
T ss_dssp E-ETT--EECEEEC
T ss_pred E-ECC--eEEEEeC
Confidence 6 555 6666653
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=1.6e-14 Score=123.35 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=72.0
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
..++|||+|||+++|+++|+++|++||.|.+|+|.++.++.++|||||+|++.++|.+|++.++. .++| +.|.|+|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~--~~~G--r~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ--KYKE--TDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC--EETT--EECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC--eECC--EEEEEEE
Confidence 36899999999999999999999999999999999998899999999999999999999987654 3776 6889999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
++.-
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 8653
No 342
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=111.94 Aligned_cols=77 Identities=27% Similarity=0.420 Sum_probs=67.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEE-EEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL-QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i-~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+||++++++++|+++|+.||.|+++ .|+.+.. .+.|||+|.+.++|.+|++.|||.. ++| +.|.|++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~V~~ 88 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQ-LEN--FTLKVAY 88 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCB-CSS--CBCEEEE
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEEE
Confidence 5789999999999999999999999999999 4777643 2349999999999999999999987 666 6899999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9765
No 343
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.6e-15 Score=110.66 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=63.8
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.++|||+||++++|+++|+++|++||.|.+| +....++. ||||+|.+.++|.+|++ ||+.. ++| +.|.|+++
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~-~~g--~~l~V~~a 79 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHS-LGG--HRLRVRPR 79 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCE-ETT--EECCCBCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeE-ECC--EEEEEEEC
Confidence 5789999999999999999999999999997 33223443 99999999999999999 99977 666 68888887
Q ss_pred CCh
Q 018554 182 DTE 184 (354)
Q Consensus 182 ~~~ 184 (354)
..+
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 644
No 344
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=5e-15 Score=129.54 Aligned_cols=83 Identities=24% Similarity=0.496 Sum_probs=68.9
Q ss_pred cccceEEEecCCCCC---------CHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccC
Q 018554 100 RLEHKLFIGMLPKNV---------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~---------t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 170 (354)
...++|||+||+..+ ++++|+++|++||+|++|+|+.+ ||||||+|.++++|+.|+++|+|..++.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 347899999999998 79999999999999999999964 8999999999999999999999987521
Q ss_pred ---------CCceeEEEEecCChHHH
Q 018554 171 ---------GSSVPLVVKWADTEKER 187 (354)
Q Consensus 171 ---------g~~~~l~v~~a~~~~~~ 187 (354)
+..+.|.|+||+.....
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-----
T ss_pred cccccccccCCCCEEEEEEccCCCCH
Confidence 12368999999866443
No 345
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=1e-14 Score=127.57 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=69.9
Q ss_pred CCCCCCeEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 018554 10 SSEERVKLFVGQVPKHM---------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~---------te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~ 80 (354)
.....++||||||+.++ +|++|+++|++||+|++|+|+. ++|||||+|.+.++|++|+++|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35578999999999998 7999999999999999999986 46899999999999999999999987
Q ss_pred cCC---------CCCccceeecccccc
Q 018554 81 TLP---------GASSPLQVKYADGEL 98 (354)
Q Consensus 81 ~~~---------g~~~~l~v~~~~~~~ 98 (354)
++. +..+.|.|+|++.+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 631 134889999997654
No 346
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=1.2e-14 Score=124.09 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceee
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~ 92 (354)
..++|||+|||+++++++|+++|++||.|.+|+|.++.. ++++|||||+|.+.++|.+|++.++ . .+.| +.|.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~-~~~G--r~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-Q-KYKE--TDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-C-EETT--EECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-C-eECC--EEEEEE
Confidence 358999999999999999999999999999999999875 9999999999999999999998764 3 4655 788888
Q ss_pred cccc
Q 018554 93 YADG 96 (354)
Q Consensus 93 ~~~~ 96 (354)
+++.
T Consensus 183 ~~~~ 186 (193)
T 2voo_A 183 FKDD 186 (193)
T ss_dssp ETTT
T ss_pred EhHH
Confidence 7654
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=3.5e-14 Score=108.77 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=69.8
Q ss_pred ccceEEEecCCC-----CCCHHHHHHhhccCCCeeEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCc
Q 018554 101 LEHKLFIGMLPK-----NVSEAEVSALFSIYGTIKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (354)
Q Consensus 101 ~~~~l~V~~l~~-----~~t~~~l~~~F~~~G~v~~i~i~~~~--~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 173 (354)
.+++|+|.||-. +-++++|+++|++||.|++|.|+++. ++.++||+||+|++.++|.+|++.|||+. ++|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~-~~G-- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY-FGG-- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE-ETT--
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE-ECC--
Confidence 367899999952 23789999999999999999999984 36789999999999999999999999987 666
Q ss_pred eeEEEEecCCh
Q 018554 174 VPLVVKWADTE 184 (354)
Q Consensus 174 ~~l~v~~a~~~ 184 (354)
+.|.|.+++..
T Consensus 84 r~i~v~~a~~~ 94 (105)
T 2pe8_A 84 RVVKACFYNLD 94 (105)
T ss_dssp EECEEEECCHH
T ss_pred cEEEEEEcCHH
Confidence 78999999754
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=9e-15 Score=114.06 Aligned_cols=75 Identities=24% Similarity=0.404 Sum_probs=62.6
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC-C---CCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeE
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-Q---QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~-~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l 176 (354)
..++|||+||++++|+++|+++|++||.|. +.++.+. + +.++|||||+|++.++|++|++.|++ ++| +.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~---~~G--~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE---EDG--KLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE---ETT--EEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh---cCC--cEE
Confidence 368899999999999999999999999999 8887764 4 68999999999999999999999843 444 344
Q ss_pred EEEec
Q 018554 177 VVKWA 181 (354)
Q Consensus 177 ~v~~a 181 (354)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 44433
No 349
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.7e-14 Score=124.41 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=69.0
Q ss_pred cceEEEecCC-CCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 102 EHKLFIGMLP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 102 ~~~l~V~~l~-~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++|||+||+ +++|+++|+++|++||.|.+|+|++++ +|||||+|++.++|++|++.|||.. +.| +.|+|.+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~-~~g--~~l~v~~ 76 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNF-MFG--QKMNVCV 76 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCE-ECC--ceEEEEE
Confidence 5789999999 899999999999999999999999763 7999999999999999999999987 565 7899999
Q ss_pred cCCh
Q 018554 181 ADTE 184 (354)
Q Consensus 181 a~~~ 184 (354)
++.+
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8643
No 350
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=106.11 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=60.8
Q ss_pred eEEEecCCCCCCHHH----HHHhhccC-CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEE
Q 018554 104 KLFIGMLPKNVSEAE----VSALFSIY-GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~----l~~~F~~~-G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v 178 (354)
.|||+||++++++++ |+++|++| |+|.+| + .|+|||+|.+.++|.+|++.|+|.. +.| ++|+|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t---gG~AfV~F~~~esA~~A~~~l~G~~-l~g--r~i~v 78 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T---GCSAILRFINQDSAERAQKRMENED-VFG--NRIIV 78 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C---TTCEEEEESSHHHHHHHHHHHTTCC-SSS--SCCEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e---cCEEEEEECCHHHHHHHHHHhcCCc-cCC--ceEEE
Confidence 399999999999988 55899999 599998 2 3999999999999999999999988 555 68999
Q ss_pred EecCCh
Q 018554 179 KWADTE 184 (354)
Q Consensus 179 ~~a~~~ 184 (354)
.+|+.+
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 999765
No 351
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.53 E-value=3.3e-13 Score=121.95 Aligned_cols=81 Identities=27% Similarity=0.523 Sum_probs=71.8
Q ss_pred cccceEEEecCCCCCCHHHHH----HhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCcee
Q 018554 100 RLEHKLFIGMLPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~----~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~ 175 (354)
+..++|||+||++++|+++|+ ++|+.||.|++|+|++ ++.++|||||+|.+.++|.+|++.|||.. +.| +.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 81 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYD--KP 81 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCe-eCC--cE
Confidence 346899999999999999977 8999999999999986 67789999999999999999999999976 565 68
Q ss_pred EEEEecCChH
Q 018554 176 LVVKWADTEK 185 (354)
Q Consensus 176 l~v~~a~~~~ 185 (354)
|+|.|++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 8999986544
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=1.9e-14 Score=113.38 Aligned_cols=76 Identities=30% Similarity=0.486 Sum_probs=67.2
Q ss_pred cccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
...++|||+|| ++|+++|+++|++||.|.+|.|. .++|||||+|++.++|.+|++.|||.. ++| +.|.|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~-~~g--~~l~V~ 106 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQ-VES--VQLKVN 106 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCB-CSS--CBCEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEEEE
Confidence 34689999996 69999999999999999999997 348999999999999999999999986 566 689999
Q ss_pred ecCChH
Q 018554 180 WADTEK 185 (354)
Q Consensus 180 ~a~~~~ 185 (354)
|++...
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 997654
No 353
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=2.4e-14 Score=105.75 Aligned_cols=71 Identities=24% Similarity=0.517 Sum_probs=63.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhccC----C-------CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccc
Q 018554 101 LEHKLFIGMLPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 169 (354)
Q Consensus 101 ~~~~l~V~~l~~~~t~~~l~~~F~~~----G-------~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 169 (354)
..++|||+||++++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .||+.. +
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~-~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGII-F 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCE-E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCE-E
Confidence 36799999999999999999999999 8 8999999876 899999999999999999 999987 6
Q ss_pred CCCceeEEEEe
Q 018554 170 EGSSVPLVVKW 180 (354)
Q Consensus 170 ~g~~~~l~v~~ 180 (354)
+| +.|+|+.
T Consensus 78 ~g--~~l~V~r 86 (87)
T 2hzc_A 78 QG--QSLKIRR 86 (87)
T ss_dssp TT--EECEEEC
T ss_pred CC--eEEEEeC
Confidence 66 5777763
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=107.70 Aligned_cols=74 Identities=20% Similarity=0.397 Sum_probs=63.1
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.++|||+||++++|+++|+++|++||.|++|+|+++ ++|||||+|++.++|++| ++.. +....+.|.|+++
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~----~~~~-~~~~g~~l~v~~a 75 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL----CGED-LIIKGISVHISNA 75 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT----TTCE-EEETTEEEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH----hcCC-ceeCCEEEEEEec
Confidence 579999999999999999999999999999999875 589999999999999754 4443 3334488999998
Q ss_pred CCh
Q 018554 182 DTE 184 (354)
Q Consensus 182 ~~~ 184 (354)
+++
T Consensus 76 ~~~ 78 (88)
T 1wf0_A 76 EPK 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 355
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=4.3e-14 Score=126.53 Aligned_cols=87 Identities=20% Similarity=0.280 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc-CCCCCccce
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT-LPGASSPLQ 90 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~-~~g~~~~l~ 90 (354)
.+.++|||+|||.++|+++|+++|+.||.|.+|.|++| .+|+++|||||+|.+.++|.+|++.|++..+ +.+..+.+.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 35789999999999999999999999999999999999 4799999999999999999999999955444 444568999
Q ss_pred eeccccccc
Q 018554 91 VKYADGELE 99 (354)
Q Consensus 91 v~~~~~~~~ 99 (354)
|.+++....
T Consensus 173 v~~~~~~~~ 181 (261)
T 3sde_A 173 VEPMEQFDD 181 (261)
T ss_dssp EEECCCEES
T ss_pred EeeccccCc
Confidence 998876543
No 356
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=2.2e-14 Score=120.22 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=70.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCcc
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~ 88 (354)
......++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|++.||+.. +.+ +.
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~ 165 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE-IDG--RS 165 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE-ETT--EE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCE-ECC--eE
Confidence 345577899999999999999999999999988765 4568999999999999999999999998866 555 78
Q ss_pred ceeeccccc
Q 018554 89 LQVKYADGE 97 (354)
Q Consensus 89 l~v~~~~~~ 97 (354)
|+|.|+.++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999988754
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.8e-13 Score=106.26 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=70.2
Q ss_pred ccccCCCCCCeEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 018554 6 KEKKSSEERVKLFVGQVPKHMT-----------EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74 (354)
Q Consensus 6 ~~~~~~~~~~~lfVg~Lp~~~t-----------e~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~ 74 (354)
+.......+++|+|.||-...+ +++|+++|++||.|.+|.| .|+ .++|||||+|.+.++|++|++
T Consensus 7 ~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 7 GGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp SCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHH
Confidence 3344667899999999943332 6899999999999999955 665 389999999999999999999
Q ss_pred HhcCCccCCCCCccceeecccccc
Q 018554 75 ACHNKKTLPGASSPLQVKYADGEL 98 (354)
Q Consensus 75 ~l~~~~~~~g~~~~l~v~~~~~~~ 98 (354)
.||+.. +.+ +.|+|.+++.+.
T Consensus 83 ~lng~~-~~g--r~l~v~~a~~~~ 103 (112)
T 2dit_A 83 TLDGRW-FGG--RQITAQAWDGTT 103 (112)
T ss_dssp HSTTCE-ETT--EECEEEECCSCC
T ss_pred HcCCCE-ECC--cEEEEEEeCCCC
Confidence 999877 444 889999887643
No 358
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=1.2e-13 Score=127.20 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=68.8
Q ss_pred cccCCCCCCeEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 7 EKKSSEERVKLFVGQ--VPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 7 ~~~~~~~~~~lfVg~--Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
-+..+.++++||||| |+.++||++|+++|++||+|++|.+.+ +||||||+|++.++|++|+++|||+.++..
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 344578899999999 578999999999999999999987643 568999999999999999999999887533
Q ss_pred --CCccceeeccc
Q 018554 85 --ASSPLQVKYAD 95 (354)
Q Consensus 85 --~~~~l~v~~~~ 95 (354)
....+.+.+..
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 33356777664
No 359
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=4.4e-14 Score=108.10 Aligned_cols=72 Identities=19% Similarity=0.404 Sum_probs=62.4
Q ss_pred EecCCCCCCHHHHHHhh------------ccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCce
Q 018554 107 IGMLPKNVSEAEVSALF------------SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (354)
Q Consensus 107 V~~l~~~~t~~~l~~~F------------~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~ 174 (354)
+.+|++++++++|+++| ++||.|++|.|.++.++.++|||||+|++.++|.+|++.|||+. ++| +
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~-~~G--r 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW-FNG--Q 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCE-ETT--E
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCE-ECC--E
Confidence 56777777877777666 99999999999999888899999999999999999999999987 666 7
Q ss_pred eEEEEec
Q 018554 175 PLVVKWA 181 (354)
Q Consensus 175 ~l~v~~a 181 (354)
.|+|.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 8888876
No 360
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.44 E-value=3.7e-13 Score=115.13 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccce
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~ 90 (354)
.+.++|||+|||.++++++|+++|++|| .|.+|+++.+ .+|||||+|.+.++|.+|++.||+..+..+ +.|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~ 190 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGEN--HHLR 190 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSC--CSCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCC--CeEE
Confidence 3488999999999999999999999999 9999999775 368999999999999999999999775224 7899
Q ss_pred eeccccc
Q 018554 91 VKYADGE 97 (354)
Q Consensus 91 v~~~~~~ 97 (354)
|.|++++
T Consensus 191 v~~a~~~ 197 (198)
T 1qm9_A 191 VSFSKST 197 (198)
T ss_dssp EEEECCC
T ss_pred EEeeccc
Confidence 9988754
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.44 E-value=1.9e-13 Score=104.72 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=70.1
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhcCC
Q 018554 12 EERVKLFVGQV--PKHMT--------EAQLLAMFKEFALVDEVNIIKDKTT--RASRGCCFVICPSRQEADKAVNACHNK 79 (354)
Q Consensus 12 ~~~~~lfVg~L--p~~~t--------e~~L~~~F~~~G~v~~i~i~~d~~t--g~~~G~aFV~f~~~~~A~~Ai~~l~~~ 79 (354)
.+++.|.|.|+ +.++. ++||++.|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 44443 4799999999999999999999865 468999999999999999999999997
Q ss_pred ccCCCCCccceeeccccc
Q 018554 80 KTLPGASSPLQVKYADGE 97 (354)
Q Consensus 80 ~~~~g~~~~l~v~~~~~~ 97 (354)
. +.| +.|++.+.+.+
T Consensus 83 ~-f~G--R~i~v~~~~~~ 97 (105)
T 3v4m_A 83 K-FAN--RVVVTKYCDPD 97 (105)
T ss_dssp E-ETT--EECEEEEECHH
T ss_pred E-eCC--CEEEEEEeCHH
Confidence 7 555 88888887643
No 362
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=2.5e-13 Score=119.17 Aligned_cols=77 Identities=23% Similarity=0.435 Sum_probs=69.7
Q ss_pred ccceEEEecCCC-CCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 101 LEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 101 ~~~~l~V~~l~~-~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
..++|||+||+. ++++++|+++|+.||.|++|+|+++. +|||||+|.+.++|++|++.||+.. +.| +.|.|.
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~-~~g--~~l~v~ 105 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHG--KPIRIT 105 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCB-CSS--SBCEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEE
Confidence 468999999999 99999999999999999999999875 7899999999999999999999976 565 688999
Q ss_pred ecCCh
Q 018554 180 WADTE 184 (354)
Q Consensus 180 ~a~~~ 184 (354)
|++..
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 88643
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.8e-13 Score=102.97 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=66.0
Q ss_pred cccceEEEecCCCCCC-----------HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 018554 100 RLEHKLFIGMLPKNVS-----------EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (354)
Q Consensus 100 ~~~~~l~V~~l~~~~t-----------~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 168 (354)
..+++|+|.||-...+ +++|+++|++||.|++|.| .++. ++|||||+|.+.++|.+|++.|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~--~~G~afV~f~~~~~A~~Ai~~lng~~- 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH--PDGVASVSFRDPEEADYCIQTLDGRW- 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC--TTCEEEEECSCHHHHHHHHHHSTTCE-
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC--CCEEEEEEECCHHHHHHHHHHcCCCE-
Confidence 3468899999944332 5899999999999999966 4543 69999999999999999999999987
Q ss_pred cCCCceeEEEEecCCh
Q 018554 169 MEGSSVPLVVKWADTE 184 (354)
Q Consensus 169 ~~g~~~~l~v~~a~~~ 184 (354)
++| +.|+|.|++.+
T Consensus 89 ~~g--r~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGG--RQITAQAWDGT 102 (112)
T ss_dssp ETT--EECEEEECCSC
T ss_pred ECC--cEEEEEEeCCC
Confidence 565 78999998764
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=98.93 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=63.9
Q ss_pred CCCCCeEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 11 SEERVKLFVGQVP-------KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 11 ~~~~~~lfVg~Lp-------~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
.....+|-|.-.. .++++++|+++|++||+|.+|.|+ ++++|||||+|.+.++|++|++.+++ +.
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~---~~ 78 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG---LV 78 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB---CS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC---CC
Confidence 4446677776554 358999999999999999999988 36889999999999999999998543 33
Q ss_pred CCCccceeeccccccc
Q 018554 84 GASSPLQVKYADGELE 99 (354)
Q Consensus 84 g~~~~l~v~~~~~~~~ 99 (354)
.+.|+|.|++.+..
T Consensus 79 --g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 79 --DNPLKISWLEGQPQ 92 (100)
T ss_dssp --SSBCEEECSSCCCC
T ss_pred --CCeEEEEEccCCCC
Confidence 47899999876543
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=4.3e-13 Score=102.71 Aligned_cols=81 Identities=20% Similarity=0.369 Sum_probs=67.6
Q ss_pred cceEEEecC--CCCCC--------HHHHHHhhccCCCeeEEEEeeCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 018554 102 EHKLFIGML--PKNVS--------EAEVSALFSIYGTIKDLQILRGSQ---QTSKGCAFLKYETKEQALAALEAINGKHK 168 (354)
Q Consensus 102 ~~~l~V~~l--~~~~t--------~~~l~~~F~~~G~v~~i~i~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 168 (354)
++.|.+.|+ +..+. ++||++.|++||.|++|.|+++.. +.++|++||+|++.++|.+|++.|||+.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~- 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK- 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE-
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE-
Confidence 567888887 33333 468999999999999999998854 3678999999999999999999999987
Q ss_pred cCCCceeEEEEecCChH
Q 018554 169 MEGSSVPLVVKWADTEK 185 (354)
Q Consensus 169 ~~g~~~~l~v~~a~~~~ 185 (354)
++| +.|+|.+++...
T Consensus 84 f~G--R~i~v~~~~~~~ 98 (105)
T 3v4m_A 84 FAN--RVVVTKYCDPDS 98 (105)
T ss_dssp ETT--EECEEEEECHHH
T ss_pred eCC--CEEEEEEeCHHH
Confidence 666 789999987553
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=3.7e-13 Score=123.92 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=67.3
Q ss_pred cccceEEEec--CCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccC--CCcee
Q 018554 100 RLEHKLFIGM--LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME--GSSVP 175 (354)
Q Consensus 100 ~~~~~l~V~~--l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~--g~~~~ 175 (354)
..+++|||+| |++.+||++|+++|++||+|++|.+.+ +||||||+|++.++|++|++.|||+.+++ |+.+.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 3467999999 578999999999999999999988764 38999999999999999999999998763 35457
Q ss_pred EEEEecC
Q 018554 176 LVVKWAD 182 (354)
Q Consensus 176 l~v~~a~ 182 (354)
|.|.+++
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8888874
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=8.3e-14 Score=106.56 Aligned_cols=72 Identities=17% Similarity=0.364 Sum_probs=61.1
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 19 VGQVPKHMTEAQLLAMF------------KEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 19 Vg~Lp~~~te~~L~~~F------------~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
+.||++++++++|++.| ++||+|.+|+|++|+. ++++|||||+|.+.++|++|++.||++. +.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~-~~G-- 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRW-FNG-- 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCE-ETT--
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCE-ECC--
Confidence 56777778888777666 9999999999999875 7899999999999999999999999876 555
Q ss_pred ccceeecc
Q 018554 87 SPLQVKYA 94 (354)
Q Consensus 87 ~~l~v~~~ 94 (354)
+.|+|.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 77777764
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=3.8e-13 Score=105.03 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=69.3
Q ss_pred CCCeEEEcCCC--CC---CCHHHHHHHHhhcCCeeEEEEeeCCC----CCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 13 ERVKLFVGQVP--KH---MTEAQLLAMFKEFALVDEVNIIKDKT----TRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 13 ~~~~lfVg~Lp--~~---~te~~L~~~F~~~G~v~~i~i~~d~~----tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
++++|+|.|+- .+ --++||++.|++||+|.+|+|++|+. +++++||+||+|.+.++|.+|++.|||+. +.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~-f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE-ET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE-EC
Confidence 68999999993 22 24789999999999999999999865 46788999999999999999999999977 55
Q ss_pred CCCccceeecccc
Q 018554 84 GASSPLQVKYADG 96 (354)
Q Consensus 84 g~~~~l~v~~~~~ 96 (354)
| +.|++.+...
T Consensus 98 G--R~i~v~~~~~ 108 (118)
T 3ue2_A 98 G--RKVVAEVYDQ 108 (118)
T ss_dssp T--EECEEEEECH
T ss_pred C--cEEEEEEcCh
Confidence 5 8888887654
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=1.8e-12 Score=101.15 Aligned_cols=81 Identities=20% Similarity=0.328 Sum_probs=68.0
Q ss_pred ccceEEEecCC--CCC---CHHHHHHhhccCCCeeEEEEeeCCC-----CCcceEEEEEeCCHHHHHHHHHHhCCCcccC
Q 018554 101 LEHKLFIGMLP--KNV---SEAEVSALFSIYGTIKDLQILRGSQ-----QTSKGCAFLKYETKEQALAALEAINGKHKME 170 (354)
Q Consensus 101 ~~~~l~V~~l~--~~~---t~~~l~~~F~~~G~v~~i~i~~~~~-----~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 170 (354)
.+++|++.|+- .++ .++||++.|++||.|++|.|+++.. +.++|++||+|++.++|.+|++.|||+. ++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~-f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE-ET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE-EC
Confidence 46789999983 222 3689999999999999999998742 4678999999999999999999999987 66
Q ss_pred CCceeEEEEecCCh
Q 018554 171 GSSVPLVVKWADTE 184 (354)
Q Consensus 171 g~~~~l~v~~a~~~ 184 (354)
| +.|.|.+++..
T Consensus 98 G--R~i~v~~~~~~ 109 (118)
T 3ue2_A 98 G--RKVVAEVYDQE 109 (118)
T ss_dssp T--EECEEEEECHH
T ss_pred C--cEEEEEEcChH
Confidence 6 78999998654
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5.1e-12 Score=95.56 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=63.5
Q ss_pred CccceeeccccccccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 86 SSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 86 ~~~l~v~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
...++|.|....... ...++++++|+++|++||+|++|.|+. .++|||||+|++.++|++|++.+++
T Consensus 10 ~~~~~v~w~~~~~~~---------~~~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDE---------SKGGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp SCEEEEECCCCSSCS---------CCCSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred cceEEEeeeccCccC---------cCCCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC
Confidence 456677775432111 136789999999999999999999983 5689999999999999999998655
Q ss_pred CcccCCCceeEEEEecCCh
Q 018554 166 KHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~ 184 (354)
+.+ +.|+|+|++..
T Consensus 77 ---~~g--~~l~V~~a~~~ 90 (100)
T 2d9o_A 77 ---LVD--NPLKISWLEGQ 90 (100)
T ss_dssp ---CSS--SBCEEECSSCC
T ss_pred ---CCC--CeEEEEEccCC
Confidence 334 68999998765
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=2.1e-11 Score=94.41 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=62.3
Q ss_pred cceEEEecCCC--C--------CCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCC
Q 018554 102 EHKLFIGMLPK--N--------VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (354)
Q Consensus 102 ~~~l~V~~l~~--~--------~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 171 (354)
++.|.+.|+=. . -.++||++.|++||.|++|.|.++. ++|++||+|++.++|.+|++.|||+. ++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~-f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRW-FAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCE-ETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 45667776621 1 1245789999999999999998763 48999999999999999999999987 666
Q ss_pred CceeEEEEecCCh
Q 018554 172 SSVPLVVKWADTE 184 (354)
Q Consensus 172 ~~~~l~v~~a~~~ 184 (354)
+.|.|.|+...
T Consensus 83 --R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 --KMITAAYVPLP 93 (114)
T ss_dssp --EECEEEEECHH
T ss_pred --EEEEEEEEcHH
Confidence 78999998654
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=9.3e-11 Score=90.80 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=62.5
Q ss_pred CCCCeEEEcCCC--CC--------CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 018554 12 EERVKLFVGQVP--KH--------MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (354)
Q Consensus 12 ~~~~~lfVg~Lp--~~--------~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~ 81 (354)
.+++.|.|.|+= .+ --++||++.|++||.|.+|.|.++. .+||+||+|.+.++|.+|++.|||+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~- 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW- 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE-
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE-
Confidence 467788998882 22 1245889999999999999987653 58999999999999999999999877
Q ss_pred CCCCCccceeeccc
Q 018554 82 LPGASSPLQVKYAD 95 (354)
Q Consensus 82 ~~g~~~~l~v~~~~ 95 (354)
+.| +.|++.+..
T Consensus 80 f~G--R~i~v~~~~ 91 (114)
T 3s6e_A 80 FAG--KMITAAYVP 91 (114)
T ss_dssp ETT--EECEEEEEC
T ss_pred ECC--EEEEEEEEc
Confidence 555 788888764
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.2e-10 Score=88.88 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=65.6
Q ss_pred cceEEEecCCCC-CCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCC-HHHHHHHHHHhC-CCcccCCCceeEEE
Q 018554 102 EHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYET-KEQALAALEAIN-GKHKMEGSSVPLVV 178 (354)
Q Consensus 102 ~~~l~V~~l~~~-~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~-~~~A~~Ai~~l~-g~~~~~g~~~~l~v 178 (354)
.+.|||+||+++ +++++|+++|++||+|..|.+.++.. .|||+|.+ .++|.+|+++|| +...+.+ ..+++
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g--~~~~~ 90 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRN--KEVTW 90 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTS--SSEEE
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeC--cEEEE
Confidence 578999999999 99999999999999999999998843 69999999 899999999995 3344666 45666
Q ss_pred EecCChHHHH
Q 018554 179 KWADTEKERQ 188 (354)
Q Consensus 179 ~~a~~~~~~~ 188 (354)
+......++.
T Consensus 91 evL~GeeE~~ 100 (121)
T 1owx_A 91 EVLEGEVEKE 100 (121)
T ss_dssp EECCHHHHHH
T ss_pred EECCCHHHHH
Confidence 6665554443
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.3e-10 Score=90.28 Aligned_cols=81 Identities=11% Similarity=0.125 Sum_probs=66.0
Q ss_pred cCCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHHHhcCC-ccCCCC
Q 018554 9 KSSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPS-RQEADKAVNACHNK-KTLPGA 85 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~-~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~-~~~A~~Ai~~l~~~-~~~~g~ 85 (354)
-.-...+.|||+||+.+ +++++|+++|++||+|..|.++++.. .|||+|.+ .++|.+|+++++.. ..+.+
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g- 85 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN- 85 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS-
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC-
Confidence 34567889999999999 99999999999999999999999876 59999999 89999999998633 33444
Q ss_pred Cccceeeccccc
Q 018554 86 SSPLQVKYADGE 97 (354)
Q Consensus 86 ~~~l~v~~~~~~ 97 (354)
..+++.....+
T Consensus 86 -~~~~~evL~Ge 96 (121)
T 1owx_A 86 -KEVTWEVLEGE 96 (121)
T ss_dssp -SSEEEEECCHH
T ss_pred -cEEEEEECCCH
Confidence 55555544443
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.8e-09 Score=78.61 Aligned_cols=70 Identities=14% Similarity=0.331 Sum_probs=57.3
Q ss_pred ceEEEecCC----CCCCH----HHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCce
Q 018554 103 HKLFIGMLP----KNVSE----AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (354)
Q Consensus 103 ~~l~V~~l~----~~~t~----~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~ 174 (354)
.+|+|.-++ .+..+ .+|.+.|++||+|..++|+.| .+||+|.+.++|.+|++ |||.. ++| +
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~-v~G--r 76 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKE-LLN--R 76 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCE-ETT--E
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeE-eCC--e
Confidence 467777665 23444 568999999999999999976 38999999999999998 99987 666 7
Q ss_pred eEEEEecCC
Q 018554 175 PLVVKWADT 183 (354)
Q Consensus 175 ~l~v~~a~~ 183 (354)
.|+|+++.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 888888764
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=1.8e-08 Score=87.46 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=59.2
Q ss_pred CCHHHHHHhhccCCCeeEEEEeeCC-----CCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEecCCh
Q 018554 114 VSEAEVSALFSIYGTIKDLQILRGS-----QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (354)
Q Consensus 114 ~t~~~l~~~F~~~G~v~~i~i~~~~-----~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 184 (354)
-.+++|++.|++||.|.++.|.++. ++.++|++||+|.+.++|.+|++.|||+. ++| +.|.+.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~-~~g--r~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FAG--RKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB-SSS--SBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce-ECC--eEEEEEEcCHH
Confidence 4678899999999999999998663 33889999999999999999999999987 777 68899998744
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=4.4e-09 Score=76.57 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=60.1
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 12 EERVKLFVGQVP----KHMTE----AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 12 ~~~~~lfVg~Lp----~~~te----~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
...-||+|.-.+ .++-. .+|.+.|..||+|..++++.|+ +||+|.+.++|.+||+ |++.. +.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~-v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKE-LL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCE-ET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeE-eC
Confidence 356688887766 23333 6899999999999999999985 8999999999999998 99987 55
Q ss_pred CCCccceeeccccc
Q 018554 84 GASSPLQVKYADGE 97 (354)
Q Consensus 84 g~~~~l~v~~~~~~ 97 (354)
| +.|+|+.+.++
T Consensus 75 G--r~LkV~lkt~d 86 (91)
T 2dnr_A 75 N--RTITIALKSPS 86 (91)
T ss_dssp T--EEEEEEECCCS
T ss_pred C--eEEEEEeCCCC
Confidence 5 78888877653
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.80 E-value=9.3e-09 Score=89.36 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeeCCC----CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeecccc
Q 018554 25 HMTEAQLLAMFKEFALVDEVNIIKDKT----TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 96 (354)
Q Consensus 25 ~~te~~L~~~F~~~G~v~~i~i~~d~~----tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~~~ 96 (354)
+-.+++|++.|++||.|.++.|.++.. +++++|++||+|.+.++|.+|++.|||+. +.| +.|.+.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~-~~g--r~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FAG--RKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB-SSS--SBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce-ECC--eEEEEEEcCH
Confidence 456789999999999999999996544 45899999999999999999999999976 555 8888887653
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=2.6e-08 Score=72.83 Aligned_cols=69 Identities=17% Similarity=0.373 Sum_probs=56.5
Q ss_pred cceEEEecCCCC-----CCH----HHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCC
Q 018554 102 EHKLFIGMLPKN-----VSE----AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (354)
Q Consensus 102 ~~~l~V~~l~~~-----~t~----~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~ 172 (354)
..+|+|.-++.. +.+ .+|.+.|++||+|..++|..|+ +||+|.+.++|.+||+ |||.. ++|
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~-v~G- 84 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMK-VKG- 84 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSE-ETT-
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCee-eCC-
Confidence 467888887632 333 4688999999999999999872 9999999999999998 99988 555
Q ss_pred ceeEEEEec
Q 018554 173 SVPLVVKWA 181 (354)
Q Consensus 173 ~~~l~v~~a 181 (354)
+.|+|++.
T Consensus 85 -r~L~V~~k 92 (95)
T 1ufw_A 85 -RAVKISGP 92 (95)
T ss_dssp -EEEEEECC
T ss_pred -eEEEEecc
Confidence 67888764
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=3.7e-08 Score=72.01 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=58.6
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 018554 11 SEERVKLFVGQVPKH-----MTE----AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~-----~te----~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~ 81 (354)
-.+.-||+|.-++.+ +-. .+|.+.|..||+|..++++.|+ +||+|.+.++|.+||+ |++..
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~- 81 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK- 81 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE-
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee-
Confidence 456789999888643 222 5799999999999999999985 9999999999999998 99887
Q ss_pred CCCCCccceeecc
Q 018554 82 LPGASSPLQVKYA 94 (354)
Q Consensus 82 ~~g~~~~l~v~~~ 94 (354)
+.+ +.|+|++.
T Consensus 82 v~G--r~L~V~~k 92 (95)
T 1ufw_A 82 VKG--RAVKISGP 92 (95)
T ss_dssp ETT--EEEEEECC
T ss_pred eCC--eEEEEecc
Confidence 455 77777754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=4.7e-06 Score=62.11 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=62.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhccC-----CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIY-----GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~-----G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l 176 (354)
.++|-+=+||+.++++.|+.+++.+ |.+++|.+..| -+=|+|+|.|...|.+|.-+|+|.. ++| +.|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~e-f~g--r~L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQ-FQG--KVI 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEE-ETT--EEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCee-ecC--eEE
Confidence 5778899999999999999999999 99999999988 5569999999999999999999987 665 677
Q ss_pred EEE
Q 018554 177 VVK 179 (354)
Q Consensus 177 ~v~ 179 (354)
+|-
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 775
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=9.9e-06 Score=60.41 Aligned_cols=75 Identities=11% Similarity=0.180 Sum_probs=64.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 018554 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEF-----ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (354)
Q Consensus 8 ~~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~-----G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~ 82 (354)
+...+..++|-|-|||-.++++.|+.+++++ |.+..|.+..|.. =|+|+|.|..+|-+|.-+|+|.. +
T Consensus 15 ~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~e-f 87 (117)
T 2l9w_A 15 RNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQ-F 87 (117)
T ss_dssp CCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEE-E
T ss_pred cCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCee-e
Confidence 4445678999999999999999999999999 9999999999874 69999999999999999998877 3
Q ss_pred CCCCcccee
Q 018554 83 PGASSPLQV 91 (354)
Q Consensus 83 ~g~~~~l~v 91 (354)
.+ +.|++
T Consensus 88 ~g--r~Lr~ 94 (117)
T 2l9w_A 88 QG--KVIRS 94 (117)
T ss_dssp TT--EEEEE
T ss_pred cC--eEEEe
Confidence 33 44443
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2.3e-05 Score=57.99 Aligned_cols=91 Identities=19% Similarity=0.228 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh-c----CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 018554 10 SSEERVKLFVGQVPKHMTEAQLLAMFKE-F----ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (354)
Q Consensus 10 ~~~~~~~lfVg~Lp~~~te~~L~~~F~~-~----G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g 84 (354)
.....++|.|.|||.+++++.|.-+|+. - |+|+++.... +-|+|+|.+.+.|++.|+. ..+.+.+
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k--~~H~L~~ 73 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ--ADHELHG 73 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC--SCCBSSS
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC--CcceecC
Confidence 3456789999999999999999999998 2 5898887644 3689999999999999875 2445555
Q ss_pred CCccceeeccccccccccceEEEecCCCCCC
Q 018554 85 ASSPLQVKYADGELERLEHKLFIGMLPKNVS 115 (354)
Q Consensus 85 ~~~~l~v~~~~~~~~~~~~~l~V~~l~~~~t 115 (354)
..|.|...- .+...+|++.+|+..++
T Consensus 74 --~~LsV~P~~---~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 74 --AQLSLRPAP---PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp --SBCEEEECC---CCCCCCCCCCSCCCCCC
T ss_pred --eEEEEEcCC---CCCcceEeeecCCCCCC
Confidence 666665432 33356899999988764
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.79 E-value=0.00029 Score=51.38 Aligned_cols=79 Identities=13% Similarity=0.278 Sum_probs=63.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC--CC-CcceEEEEEeCCHHHHHHHHHHhCCCcccCCCce--eEE
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--QQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSV--PLV 177 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~--~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~--~l~ 177 (354)
+||.|++||..+||+++.+.++...++....++..+ .+ ..-.-|+|.|.+.+++....+.++|..+.|.++. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 579999999999999999999999888888877653 12 2236799999999999999999999987765433 334
Q ss_pred EEec
Q 018554 178 VKWA 181 (354)
Q Consensus 178 v~~a 181 (354)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6665
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.71 E-value=0.00015 Score=52.91 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=59.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCC--cccEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~--~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
++|.|++||+.+||+++.+.+....++.....+.-+.+.+ .-.-|+|.|.+.+++....+.++|..+.+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 6899999999999999999999998887777666544332 12459999999999999999999987766543
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.55 E-value=0.00032 Score=51.18 Aligned_cols=58 Identities=24% Similarity=0.419 Sum_probs=47.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 018554 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 11 ~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
....+-++| ++|+++...||.++|+.||-| .|+.+.|- -|||.|.+.+.|..|++.+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 334455666 999999999999999999954 56677774 69999999999999999763
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.0016 Score=48.08 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=53.8
Q ss_pred cceEEEecCCCCCCHHHHHHhhccC-----CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIY-----GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~-----G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l 176 (354)
.++|.|.|||..++++.|.-+|+.- |+|++++... +-|+|+|.+.+.|++.++. ..+.+.+ .+|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k--~~H~L~~--~~L 76 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ--ADHELHG--AQL 76 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC--SCCBSSS--SBC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC--CcceecC--eEE
Confidence 5789999999999999999999762 5899998874 4689999999999998864 2344666 456
Q ss_pred EEE
Q 018554 177 VVK 179 (354)
Q Consensus 177 ~v~ 179 (354)
.|.
T Consensus 77 sV~ 79 (104)
T 2dhx_A 77 SLR 79 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.0013 Score=50.16 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=58.6
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
.+-|.|-+.+... ...|.++|++||+|.+...... ..+..|+|.++.+|++||.+ ||.. +++ ...|-|+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~k-NG~i-i~g-~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALSK-DGRI-FGE-SIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHTT-TTCE-ETT-TEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHHh-CCeE-ecC-CEEEEEEEC
Confidence 5678888998874 5667789999999998886321 45899999999999999974 8865 554 367888887
Q ss_pred CChHH
Q 018554 182 DTEKE 186 (354)
Q Consensus 182 ~~~~~ 186 (354)
..+..
T Consensus 95 ~d~~v 99 (119)
T 1wwh_A 95 IDKNV 99 (119)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 55443
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.00066 Score=50.37 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=59.7
Q ss_pred cceEEEecCCCCCC-----HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeE
Q 018554 102 EHKLFIGMLPKNVS-----EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (354)
Q Consensus 102 ~~~l~V~~l~~~~t-----~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l 176 (354)
.++|+|.+|+.++- .+.++++|..|+.+.....++. -.-..|.|.+.++|.+|-..|++.. +.| ..+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~-f~g--~~~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTE-FLG--KEM 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSE-ETT--EEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccce-ecC--cee
Confidence 46899999987652 2567899999999888888864 2357899999999999999999987 555 578
Q ss_pred EEEecC
Q 018554 177 VVKWAD 182 (354)
Q Consensus 177 ~v~~a~ 182 (354)
+|-++.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999886
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.15 E-value=0.0011 Score=48.56 Aligned_cols=80 Identities=14% Similarity=0.280 Sum_probs=58.5
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCC--CCCc-ceEEEEEeCCHHHHHHHHHHhCCCcccCCC--ceeE
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--QQTS-KGCAFLKYETKEQALAALEAINGKHKMEGS--SVPL 176 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~--~~~~-~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~--~~~l 176 (354)
+-+|.|+.||..+||+++.+.++..-++....++... .+.+ -.-|+|.|.+.++.....+..+|..++|.+ .-+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 3579999999999999999888776565444433321 1111 256899999999999999999998877643 3345
Q ss_pred EEEec
Q 018554 177 VVKWA 181 (354)
Q Consensus 177 ~v~~a 181 (354)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.08 E-value=0.00069 Score=49.61 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=45.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
-++| ++|+++...||.++|+.||- ..|..+.|- -|||.|.+.+.|..|++.+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3555 99999999999999999994 466777774 69999999999999999873
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.01 E-value=0.0021 Score=46.93 Aligned_cols=55 Identities=24% Similarity=0.448 Sum_probs=45.5
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 164 (354)
++.++| .+|.++...||.++|+.||. ..|+.+.| ..|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 456677 99999999999999999983 44555554 369999999999999998774
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.93 E-value=0.0019 Score=49.24 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=50.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~ 83 (354)
.+..+.+.|.|-++|.. ..+.|.+.|++||+|.+..... ...+-.|.|.+..+|++||.+ |+ .++.
T Consensus 19 ~~~~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG-~ii~ 84 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DG-RIFG 84 (119)
T ss_dssp --CGGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TT-CEET
T ss_pred CCCCCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CC-eEec
Confidence 34556889999999988 4777888999999999877621 224999999999999999976 34 4343
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.78 E-value=0.0013 Score=48.30 Aligned_cols=75 Identities=8% Similarity=0.080 Sum_probs=54.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC-CCcc-cEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT-RASR-GCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~t-g~~~-G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~ 86 (354)
..+-+|.|+.||+.+||+++.+.+..+-++.....+.-+.+ +.++ .-|+|.|.+.++.....+.+++..+.+.++
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 35678999999999999999988887655443332222222 2221 358999999999999999998877666543
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.0025 Score=46.66 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=45.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 164 (354)
+.++| ++|.++...||.++|+.|| -..|+.+.| ..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 55667 9999999999999999999 455666665 369999999999999998775
No 396
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.68 E-value=0.0032 Score=46.68 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=58.3
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCc
Q 018554 13 ERVKLFVGQVPKHM-T----EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~-t----e~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~ 87 (354)
-.++|+|.||+.++ . ++.++++|..|+++......+.-. -..|.|.+.++|.+|...||+.. +.| +
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~-f~g--~ 74 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTE-FLG--K 74 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSE-ETT--E
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccce-ecC--c
Confidence 45789999998765 3 257789999999988877777542 57899999999999999998877 444 5
Q ss_pred cceeeccc
Q 018554 88 PLQVKYAD 95 (354)
Q Consensus 88 ~l~v~~~~ 95 (354)
.+++-+++
T Consensus 75 ~~r~YFgq 82 (104)
T 1wey_A 75 EMKLYFAQ 82 (104)
T ss_dssp ECEEECCC
T ss_pred eeEEEecC
Confidence 67776665
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.63 E-value=0.0003 Score=66.80 Aligned_cols=61 Identities=10% Similarity=0.215 Sum_probs=45.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 018554 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (354)
Q Consensus 9 ~~~~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~ 75 (354)
+.....++|||. .+.++++.+|.++|++||.|.++..-+++. -||.|||.+.+++..+++.
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 345567899997 899999999999999999999987776542 4999999999999977654
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.69 E-value=0.0047 Score=58.67 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=43.8
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 018554 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (354)
Q Consensus 99 ~~~~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~ 161 (354)
+...+.|+|. .+..+++.+|.++|++||.|.++.+.++. .-||.|+|.+.+++..++.
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 3446889998 68899999999999999999999888753 3699999999999987764
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.38 E-value=0.042 Score=42.42 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=52.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeE-EEEeeCCC---------C-----CcceEEEEEeCCHHHHHHHHHHhCCCc
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQ---------Q-----TSKGCAFLKYETKEQALAALEAINGKH 167 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~-i~i~~~~~---------~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~ 167 (354)
.-|.|-+.|.+.+. .+.++|++||.|.+ ..+.++.. . ....+..|+|++..+|.+||.. ||+.
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 44667778766444 46689999999866 32221100 0 1246789999999999999974 8865
Q ss_pred ccCCCceeEEEEecCCh
Q 018554 168 KMEGSSVPLVVKWADTE 184 (354)
Q Consensus 168 ~~~g~~~~l~v~~a~~~ 184 (354)
++| ..|-|+..+..
T Consensus 86 -i~G--~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 -FNG--VLLGVIPYTKD 99 (132)
T ss_dssp -ETT--EECEEEECCHH
T ss_pred -eCc--EEEEEEECCHH
Confidence 777 47888888643
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.10 E-value=0.038 Score=42.69 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=45.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEee------------CCCCC-CcccEEEEEeCCHHHHHHHHHHhcC
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV-NIIK------------DKTTR-ASRGCCFVICPSRQEADKAVNACHN 78 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i-~i~~------------d~~tg-~~~G~aFV~f~~~~~A~~Ai~~l~~ 78 (354)
....|.|-+.|.+ ....+.+.|++||.|.+- .+.+ .+... ....+..|+|++..+|++||.. +
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~--N 82 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE--N 82 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT--T
T ss_pred CceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh--C
Confidence 4567888899766 455677889999997762 1111 00001 1345789999999999999976 4
Q ss_pred CccCCC
Q 018554 79 KKTLPG 84 (354)
Q Consensus 79 ~~~~~g 84 (354)
..++.|
T Consensus 83 G~ii~G 88 (132)
T 3p3d_A 83 GAVFNG 88 (132)
T ss_dssp TCEETT
T ss_pred CeEeCc
Confidence 454555
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.13 E-value=0.44 Score=45.92 Aligned_cols=55 Identities=25% Similarity=0.423 Sum_probs=45.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
...++|+ ++..+...+|.++|+.||.| +|..+.|. .|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4466665 99999999999999999964 55555553 79999999999999999884
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.80 E-value=3.3 Score=39.85 Aligned_cols=56 Identities=23% Similarity=0.416 Sum_probs=45.2
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 165 (354)
+..++|+ ++..+...+|.++|+.||. .+|..+. ...|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wid------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWID------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECS------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEc------CCeEEEEECCHHHHHHHHHHHHh
Confidence 4566666 8888899999999999994 4555554 34799999999999999998854
No 403
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.19 E-value=26 Score=24.65 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=41.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~ 75 (354)
.-|+-.++.+.+..++++.+++ |+ .|..|+.+.-+. |. -=|+|......+|...-+.
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SC--EEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-Cc--eEEEEEcCCCCcHHHHHHh
Confidence 3455567889999999999998 88 588888776542 21 1399999887777765544
No 404
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=54.28 E-value=13 Score=26.22 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=38.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 018554 17 LFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA 72 (354)
Q Consensus 17 lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~A 72 (354)
-|+-.++.+.+..+|++.+++ |+ .|..|+.+.-+. + .==|+|......+|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~--~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-G--EKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-C--ceEEEEEECCCCcHHHH
Confidence 455667899999999999998 78 588888777542 1 11389999876665443
No 405
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=52.25 E-value=37 Score=22.14 Aligned_cols=54 Identities=17% Similarity=0.029 Sum_probs=41.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 162 (354)
.++.|.++.-.-....|.+.+.. -.|..+.+-.. .+-+.|+|++.++..++|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHH
Confidence 56889999877788889999988 77888887654 55678888866666677764
No 406
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=49.89 E-value=82 Score=23.87 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=63.1
Q ss_pred CHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCCccceeeccccccccccceE
Q 018554 27 TEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKL 105 (354)
Q Consensus 27 te~~L~~~F~~~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~~~~~~~g~~~~l~v~~~~~~~~~~~~~l 105 (354)
.-.+|.+.|.+.| .|..+.+.... ..|+.-+.+.+.+.|.++++.. +.. ... ..+
T Consensus 19 ~l~~i~~~la~~~inI~~i~~~~~~----~~~~~~~~~~d~~~a~~~L~~~-G~~--------v~~-----------~sv 74 (144)
T 2f06_A 19 RLTEVTEVLAKENINLSALCIAENA----DFGILRGIVSDPDKAYKALKDN-HFA--------VNI-----------TDV 74 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECS----SCEEEEEEESCHHHHHHHHHHT-TCC--------EEE-----------EEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEecC----CCCEEEEEeCCHHHHHHHHHHc-CCe--------Eee-----------eeE
Confidence 3467778888877 46666553211 1133223367888888777753 211 000 123
Q ss_pred EEecCCCCC-CHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 018554 106 FIGMLPKNV-SEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 167 (354)
Q Consensus 106 ~V~~l~~~~-t~~~l~~~F~~~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 167 (354)
..-.++... .-.++.+.+...| .|+.+.... . ..+..+.|.+++.+.|.++++. .|..
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~--~~~~~~~i~~~d~~~A~~~L~~-~g~~ 134 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-N--NNVANVVIRPSNMDKCIEVLKE-KKVD 134 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-E--TTEEEEEEEESCHHHHHHHHHH-TTCE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-c--CCcEEEEEEeCCHHHHHHHHHH-cCCE
Confidence 332444332 3455666676666 466655542 1 1256777899999998888876 4543
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=49.39 E-value=66 Score=22.64 Aligned_cols=57 Identities=11% Similarity=0.185 Sum_probs=47.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 12 ~~~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
...|-|-|-|||..+-+.++.-.....|---.|..+. |-|.|.|.+.++-+.|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 4567788889999999999998888888656666543 47999999999999999886
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=47.39 E-value=71 Score=22.46 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=45.2
Q ss_pred cceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 018554 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (354)
Q Consensus 102 ~~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 163 (354)
.|-+-|-|+|..+-..++.-.....|-.-.+..+ .|.|.|+|.+.++..-|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 4667888999888888877777777877777777 567999999999999999876
No 409
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=46.36 E-value=29 Score=27.41 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=40.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 018554 17 LFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (354)
Q Consensus 17 lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~ 75 (354)
-|+-.++.+.+..+|++.+++ |+ .|..|+.+.-+. + .==|||......+|....+.
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-~--~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD-G--EKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS-S--CEEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC-C--ceEEEEEECCCCcHHHHHHh
Confidence 455567889999999999998 78 588888776543 1 11389999877665554443
No 410
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=51.87 E-value=4.3 Score=30.03 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=33.4
Q ss_pred CCHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEE--EeCCHHHHHHHHHHhCCCc
Q 018554 114 VSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFL--KYETKEQALAALEAINGKH 167 (354)
Q Consensus 114 ~t~~~l~~~F~~~G~v~~i~i~~~-~~~~~~g~afV--~f~~~~~A~~Ai~~l~g~~ 167 (354)
.++++|.++..+.+ +..+.+.+. .+|+ ..|..+ .|.+.++|.+|++.|-...
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk-~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQ-PWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 44566777767765 445666654 2333 233333 8999999999999886643
No 411
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=45.37 E-value=71 Score=23.15 Aligned_cols=48 Identities=6% Similarity=0.064 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHhh-cCC----eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 018554 24 KHMTEAQLLAMFKE-FAL----VDEVNIIKDKTTRASRGCCFVICPSRQEADKA 72 (354)
Q Consensus 24 ~~~te~~L~~~F~~-~G~----v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~A 72 (354)
...+..+|++.+.+ |+. |.-..+...-..|++.|||.| |+|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 67889999998876 653 222223334445678888865 7777777665
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.07 E-value=64 Score=22.64 Aligned_cols=56 Identities=7% Similarity=0.164 Sum_probs=39.1
Q ss_pred eEEEecCCCCCCHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 018554 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~-~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~ 161 (354)
+-|+-.++...+..+|++.++. |+ .|.+|..+.-..+. --|+|++..-.+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~--KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE--KKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC--EEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc--eEEEEEcCCCCcHHHHHH
Confidence 3455556788999999988855 56 57888776654332 358999988777766544
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.96 E-value=70 Score=25.64 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=35.8
Q ss_pred eEEEcCCCC---------CCCHHHHHHHH--hhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHH
Q 018554 16 KLFVGQVPK---------HMTEAQLLAMF--KEFALVDEVNIIKDKTTRASRGCCFVICPSRQEA 69 (354)
Q Consensus 16 ~lfVg~Lp~---------~~te~~L~~~F--~~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A 69 (354)
++.|-|++. ..+..+|++.| ..|..++ |+...++. -.+|++.|+|.+....
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHH
Confidence 345556665 14557999977 8898854 66666653 4789999999876543
No 414
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=42.84 E-value=77 Score=23.02 Aligned_cols=48 Identities=2% Similarity=-0.090 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHhh-cCC----eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 018554 24 KHMTEAQLLAMFKE-FAL----VDEVNIIKDKTTRASRGCCFVICPSRQEADKA 72 (354)
Q Consensus 24 ~~~te~~L~~~F~~-~G~----v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~A 72 (354)
...+..+|++.+.+ |+. |.-..+...-..|++.|||.| |+|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 67889999998876 553 222223344445688888865 7787777653
No 415
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=42.55 E-value=54 Score=23.40 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=26.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeC
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKD 49 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d 49 (354)
..|+-.++.+.+.-+|++.+++ |+ .|..|+.+.-
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~ 63 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVV 63 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEe
Confidence 3566678899999999999998 78 5778776553
No 416
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=41.77 E-value=13 Score=27.04 Aligned_cols=47 Identities=9% Similarity=0.170 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEeeCCCC----CCcccEEEEEeCCHHHHHH
Q 018554 24 KHMTEAQLLAMFKE-FALVDEVNIIKDKTT----RASRGCCFVICPSRQEADK 71 (354)
Q Consensus 24 ~~~te~~L~~~F~~-~G~v~~i~i~~d~~t----g~~~G~aFV~f~~~~~A~~ 71 (354)
...+..||++.+.+ |+.-.++.++..-.| +++.|||.| |+|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46789999987776 654344444444333 577788765 555555554
No 417
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=41.34 E-value=36 Score=24.43 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=26.8
Q ss_pred EEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCC
Q 018554 18 FVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDK 50 (354)
Q Consensus 18 fVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~ 50 (354)
|+-.++.+.+..+|++.+++ |+ .|..|+.+.-+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~ 59 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVP 59 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeC
Confidence 66678899999999999998 78 58888776543
No 418
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=38.64 E-value=59 Score=25.18 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=40.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 17 LFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 17 lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
-|+--++.+.+..+|++.+++ |+ .|..|+.+.-+. |.- =|||.+....+|.+.-+.+
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~K--KAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-GTK--KAYVRLTADYDALDIANRI 139 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-SCE--EEEEEECTTCCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-Cce--EEEEEeCCCCcHHHHHHhh
Confidence 455567889999999999998 77 588888776543 211 3899998776666654443
No 419
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=36.42 E-value=64 Score=25.21 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=40.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 17 LFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 17 lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
-|+--++.+.+..+|++.+++ |+ .|..|+.+.-+. |.- =|||.+....+|.+.-+.+
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g~K--KAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-GNK--KAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SCE--EEEEEECSSSCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-CcE--EEEEEcCCCCcHHHHHHhh
Confidence 445567889999999999998 78 588888776543 211 3899998776766654443
No 420
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=34.07 E-value=30 Score=27.05 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEe----eCCCCCCcccEEEEEeCCHHHHHHH
Q 018554 24 KHMTEAQLLAMFKE-FALVDEVNII----KDKTTRASRGCCFVICPSRQEADKA 72 (354)
Q Consensus 24 ~~~te~~L~~~F~~-~G~v~~i~i~----~d~~tg~~~G~aFV~f~~~~~A~~A 72 (354)
...+..||++.+.+ |+.-.++.++ ..-..+++.|||.| |+|.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 57889999998877 6642222222 22334678888877 7777777654
No 421
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=33.14 E-value=6.7 Score=30.85 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=17.1
Q ss_pred HHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeC
Q 018554 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 151 (354)
Q Consensus 117 ~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~ 151 (354)
+|+.++|...|.|+..... +||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-------CCeeEEeeC
Confidence 4666777777777664432 789999876
No 422
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.54 E-value=91 Score=21.93 Aligned_cols=45 Identities=9% Similarity=0.182 Sum_probs=28.5
Q ss_pred CHHHHHHHHhh----cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 27 TEAQLLAMFKE----FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 27 te~~L~~~F~~----~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
.|..+++.+++ -| .|.+|.+.. .-.||.||++...++...+++.+
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCC
Confidence 34444444442 34 356655543 36799999999988887777653
No 423
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=29.25 E-value=79 Score=19.85 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=38.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCC---HHHHHHHHHH
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYET---KEQALAALEA 162 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~~---~~~A~~Ai~~ 162 (354)
.++.|.++.-......|.+.+.....|.++.+-.. .+-+.|+|.+ .++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA-----LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 35788888777777889999988877888887654 4457788743 3444555543
No 424
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=29.13 E-value=1.1e+02 Score=19.42 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=40.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeC----CHHHHHHHHHH
Q 018554 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE----TKEQALAALEA 162 (354)
Q Consensus 103 ~~l~V~~l~~~~t~~~l~~~F~~~G~v~~i~i~~~~~~~~~g~afV~f~----~~~~A~~Ai~~ 162 (354)
.++.|.++.-.-....|.+.+...-.|..+.+-.. .+-+.|+|+ +.++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----QNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 45788888777677889999988877888887654 456788885 45666677765
No 425
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=29.10 E-value=1.7e+02 Score=22.29 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHhh-cCCeeEE----EEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 018554 24 KHMTEAQLLAMFKE-FALVDEV----NIIKDKTTRASRGCCFVICPSRQEADKA 72 (354)
Q Consensus 24 ~~~te~~L~~~F~~-~G~v~~i----~i~~d~~tg~~~G~aFV~f~~~~~A~~A 72 (354)
...+..||++-+.+ |+.-.++ .+......|++.|||.| |+|.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 46899999998876 6642222 22333444678888876 7777777654
No 426
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=28.78 E-value=58 Score=25.52 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=39.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 018554 17 LFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74 (354)
Q Consensus 17 lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~ 74 (354)
-|+--++.+.+..+|++.+++ |+ .|..|+.+.-+. |. ==|||.+....+|.+..+
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~--KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD-GK--KKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTT-SS--EEEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCC-Cc--eEEEEEcCCCCcHHHHHH
Confidence 445567789999999999998 77 588888776442 21 138999987766665433
No 427
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=26.57 E-value=1.9e+02 Score=21.25 Aligned_cols=59 Identities=7% Similarity=0.014 Sum_probs=38.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh-------cCCeeEEEEeeCCCC-CCcccE---EEEEeCCHHHHHHH
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKE-------FALVDEVNIIKDKTT-RASRGC---CFVICPSRQEADKA 72 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~-------~G~v~~i~i~~d~~t-g~~~G~---aFV~f~~~~~A~~A 72 (354)
-+.|.+-.|..+++++++.++.+. .-.|.++.+-++..+ ++.+|| ..++|+|.++-+..
T Consensus 21 i~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y 90 (121)
T 3bb5_A 21 LYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAY 90 (121)
T ss_dssp EEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHH
Confidence 345566688888888866655543 345778887777643 455665 45788887775543
No 428
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=25.84 E-value=57 Score=32.23 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHh----hcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 018554 21 QVPKHMTEAQLLAMFK----EFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (354)
Q Consensus 21 ~Lp~~~te~~L~~~F~----~~G~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l~ 77 (354)
..+++.+--||..+|. .+|.|.++.+..-+. -+.+.++++.|.|.++|.+++..+.
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHHH
Confidence 3456666668899884 478899988765543 3456688999999999999988763
No 429
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=25.30 E-value=37 Score=18.58 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=14.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh
Q 018554 13 ERVKLFVGQVPKHMTEAQLLAMFKE 37 (354)
Q Consensus 13 ~~~~lfVg~Lp~~~te~~L~~~F~~ 37 (354)
.-++||||+ +.++|+++-++
T Consensus 4 qvrtiwvgg-----tpeelkklkee 23 (36)
T 2ki0_A 4 QVRTIWVGG-----TPEELKKLKEE 23 (36)
T ss_dssp SCCCCCBCC-----CHHHHHHHHHH
T ss_pred eeEEEEecC-----CHHHHHHHHHH
Confidence 457899988 56777766543
No 430
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.00 E-value=25 Score=23.27 Aligned_cols=11 Identities=9% Similarity=0.513 Sum_probs=8.8
Q ss_pred ceEEEEEeCCH
Q 018554 143 KGCAFLKYETK 153 (354)
Q Consensus 143 ~g~afV~f~~~ 153 (354)
+..|||+|+|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 56899999873
No 431
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=24.99 E-value=1.9e+02 Score=20.74 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=38.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh-------cCCeeEEEEeeCCCC-CCcccE---EEEEeCCHHHHHHHH
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKE-------FALVDEVNIIKDKTT-RASRGC---CFVICPSRQEADKAV 73 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~-------~G~v~~i~i~~d~~t-g~~~G~---aFV~f~~~~~A~~Ai 73 (354)
-+.|.+-.|..+++++++.++.+. .-.|.++.+-++... ++.+|| ..++|+|.++-+...
T Consensus 11 i~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 11 VKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 345555678888888876655543 335777777776543 445565 457888887765443
No 432
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=24.87 E-value=67 Score=21.37 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=34.4
Q ss_pred CCCCHHHHHHhhc-cCC----CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEec
Q 018554 112 KNVSEAEVSALFS-IYG----TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (354)
Q Consensus 112 ~~~t~~~l~~~F~-~~G----~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~a 181 (354)
..++..+|..++. ..| .|-.|+|..+ |.||+-.. +.|.++++.|++.. +.| +.+.|+.+
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~-i~g--~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTT-VKG--KQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCC-C-----CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhcccc-CcC--ceEEEEEC
Confidence 3455566666664 333 3777888743 78888776 45777888888865 555 45555554
No 433
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=24.84 E-value=1.2e+02 Score=23.65 Aligned_cols=56 Identities=9% Similarity=0.272 Sum_probs=38.5
Q ss_pred eEEEecCCCCCCHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 018554 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~-~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~ 161 (354)
+-|+-.++...+..+|++.++. |+ .|..|..+.-..+. --|+|++....+|.....
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~--KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGN--KKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSC--EEEEEEECSSSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc--EEEEEEcCCCCcHHHHHH
Confidence 4566667788999999988854 55 57888776654442 358899987666665443
No 434
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=24.41 E-value=1.2e+02 Score=23.41 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=38.6
Q ss_pred eEEEecCCCCCCHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 018554 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (354)
Q Consensus 104 ~l~V~~l~~~~t~~~l~~~F~~-~G-~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~ 161 (354)
+-|+-.++...+..+|++.++. |+ .|..|..+.-..+. --|+|++..-.+|.....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~--KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGT--KKAYVRLTADYDALDIAN 137 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSC--EEEEEEECTTCCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc--eEEEEEeCCCCcHHHHHH
Confidence 5566667888999999988854 55 57888776554432 358899987766665443
No 435
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=24.10 E-value=1.3e+02 Score=21.74 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=44.5
Q ss_pred cCCCCCCHHHHHHhh-ccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEEe
Q 018554 109 MLPKNVSEAEVSALF-SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (354)
Q Consensus 109 ~l~~~~t~~~l~~~F-~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~~ 180 (354)
.++..+.-+||.... +.||.-.++..... -..|-..+.++..+||+.|+-.. .-+..+|.+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~-------EllIpl~sQeDLDkaIellDrss--~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRSI--HMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS-------SSCEECCSHHHHHHHHHHHHHCS--SCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc-------eEEEeccCHHHHHHHHHHHccCC--cccceEEEEec
Confidence 346678888887655 78898777777722 25789999999999999987653 22335555543
No 436
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.85 E-value=69 Score=31.61 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHhh--c--cCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 018554 111 PKNVSEAEVSALF--S--IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (354)
Q Consensus 111 ~~~~t~~~l~~~F--~--~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 163 (354)
..+.+-=||..+| + .+|.|+++.+.--+....+.++++.|.+.++|.+++..+
T Consensus 352 ~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 352 PRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp SSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3444444788888 2 567788887754434445678899999999999988765
No 437
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=23.70 E-value=38 Score=22.45 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=9.2
Q ss_pred cccEEEEEeCC
Q 018554 55 SRGCCFVICPS 65 (354)
Q Consensus 55 ~~G~aFV~f~~ 65 (354)
.+|.|+|.|.|
T Consensus 40 ~~gtC~V~F~D 50 (66)
T 2eqj_A 40 LKQSCFIIFED 50 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCcEEEEEEcc
Confidence 45799999987
No 438
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=23.22 E-value=2.2e+02 Score=20.74 Aligned_cols=56 Identities=7% Similarity=-0.041 Sum_probs=35.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc-------CCeeEEEEeeCCCCCCcccE---EEEEeCCHHHHHH
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKEF-------ALVDEVNIIKDKTTRASRGC---CFVICPSRQEADK 71 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~~-------G~v~~i~i~~d~~tg~~~G~---aFV~f~~~~~A~~ 71 (354)
+.|.+-.|..+++++++.++.+.+ ..|.++.+-++.. ++.+|| ..++|+|.++-+.
T Consensus 23 ~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 23 RHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 345556788888888766655442 3467777777764 455565 4466777666543
No 439
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=22.94 E-value=47 Score=31.69 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHhh--ccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHH
Q 018554 119 VSALF--SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAA 159 (354)
Q Consensus 119 l~~~F--~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~A 159 (354)
|+.+| +.+|.|+++.+...+.......+++.|.+.++|.+|
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~ 260 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEI 260 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHH
Confidence 45666 468889998775544344456778999987776553
No 440
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=22.83 E-value=40 Score=22.97 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=9.2
Q ss_pred cccEEEEEeCCH
Q 018554 55 SRGCCFVICPSR 66 (354)
Q Consensus 55 ~~G~aFV~f~~~ 66 (354)
.+..|+|.|.|.
T Consensus 53 ~~e~ClV~F~D~ 64 (79)
T 2m0o_A 53 AREVCLVQFEDD 64 (79)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCEEEEEEcCC
Confidence 456899999873
No 441
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.35 E-value=75 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=27.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEee
Q 018554 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIK 48 (354)
Q Consensus 14 ~~~lfVg~Lp~~~te~~L~~~F~~~G~v~~i~i~~ 48 (354)
...+.|+|||.+++...|.++++. ..+..+.++.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 457899999999999999999988 6665554443
No 442
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=22.07 E-value=2.2e+02 Score=20.58 Aligned_cols=52 Identities=12% Similarity=0.245 Sum_probs=40.5
Q ss_pred cCCCCCCHHHHHHhh-ccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 018554 109 MLPKNVSEAEVSALF-SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 167 (354)
Q Consensus 109 ~l~~~~t~~~l~~~F-~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 167 (354)
-++.-+.-+||.... ..||.-.++....+ --.|-..+.++..+|++.|+...
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn-------EL~IPL~~Q~DLDkAvelLDrs~ 98 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN-------ELSILLKNQDDLDKAIDILDRSS 98 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS-------SCEEECCSHHHHHHHHHHHHHCS
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-------eEEEecccHHHHHHHHHHhccCc
Confidence 356678888887666 78998888888743 24688999999999999987654
No 443
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.92 E-value=27 Score=22.76 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=9.0
Q ss_pred cccEEEEEeCC
Q 018554 55 SRGCCFVICPS 65 (354)
Q Consensus 55 ~~G~aFV~f~~ 65 (354)
.+..|||.|.|
T Consensus 34 ~~~~ClV~FeD 44 (63)
T 2e5q_A 34 SKQSCLVTFED 44 (63)
T ss_dssp TTSEEEEEETT
T ss_pred CCCEEEEEEcc
Confidence 45689999987
No 444
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=21.75 E-value=2.1e+02 Score=20.05 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=44.5
Q ss_pred cCCCCCCHHHHHHhh-ccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 109 MLPKNVSEAEVSALF-SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 109 ~l~~~~t~~~l~~~F-~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
-++.-+.-+||.... ..||.-.++....+ --.|-..+.++..+|++.|+...-. +..+|.+.
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn-------EL~iPL~~Q~DLDkAvelLDrs~~m--kSLRIlL~ 81 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN-------ELSILLKNQDDLDKAIDILDRSSSM--KSLRILLL 81 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS-------SCEEECCSHHHHHHHHHHHHHSTTT--TEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-------eeEEeccCHHHHHHHHHHhccCccc--cceEEEEE
Confidence 346677888887666 78998888888743 2468899999999999988765422 33455444
No 445
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=21.41 E-value=18 Score=29.37 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=39.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 018554 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (354)
Q Consensus 16 ~lfVg~Lp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~~G~aFV~f~~~~~A~~Ai~~l 76 (354)
..|+-.++.+.++.+|++.+++ |+ +|..|+.+.-+. + .==|+|......+|....+.+
T Consensus 132 NkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g-g--~KKAyVtLaeG~~AID~anKI 191 (198)
T 3bbo_V 132 NSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD-G--TKKAYIMLNKEYNASELAKKI 191 (198)
T ss_dssp CEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT-T--EEECCEEECTTTCTTTHHHHC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--eEEEEEEeCCCCchHHHHHhc
Confidence 3566678899999999999998 77 477776555332 1 113889988776655544443
No 446
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.36 E-value=1.2e+02 Score=21.20 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=21.6
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEeCC
Q 018554 40 LVDEVNIIKDKTTRASRGCCFVICPS 65 (354)
Q Consensus 40 ~v~~i~i~~d~~tg~~~G~aFV~f~~ 65 (354)
+|.+|+|.+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888776668899999999974
No 447
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=21.30 E-value=2.3e+02 Score=20.18 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=45.2
Q ss_pred cCCCCCCHHHHHHhh-ccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcccCCCceeEEEE
Q 018554 109 MLPKNVSEAEVSALF-SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (354)
Q Consensus 109 ~l~~~~t~~~l~~~F-~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~~~l~v~ 179 (354)
-++.-+.-+||.... ..||.-.++....+ --.|-..+.++..+|++.|+...-. +..+|.+.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn-------EL~iPL~~Q~DLDkAvelLDrs~~~--kSLrIlL~ 97 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRSIHM--KSLKILLV 97 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET-------TEEEECCCHHHHHHHHHHHHHCSSC--CSEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-------eeEEecccHHHHHHHHHHhccCccc--cceEEEEe
Confidence 356678888888766 78999888888844 2578999999999999988754322 33444443
No 448
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.21 E-value=82 Score=25.24 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=28.2
Q ss_pred CHHHHHHhh--ccCCCeeEEEEeeCCCCCcceEEEEEeCCHHH
Q 018554 115 SEAEVSALF--SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQ 155 (354)
Q Consensus 115 t~~~l~~~F--~~~G~v~~i~i~~~~~~~~~g~afV~f~~~~~ 155 (354)
...+|++.| +.|..++ ++.+.+..| .+|++.|+|.+--.
T Consensus 34 s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 34 SGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWN 74 (172)
T ss_dssp CSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHH
T ss_pred CHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChH
Confidence 456899977 9998755 666666554 48999999987433
No 449
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=21.06 E-value=57 Score=16.81 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.5
Q ss_pred CHHHHHHHHhhc
Q 018554 27 TEAQLLAMFKEF 38 (354)
Q Consensus 27 te~~L~~~F~~~ 38 (354)
+|.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999999887
No 450
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=20.15 E-value=2.4e+02 Score=20.01 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=37.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhh-------cCCeeEEEEeeCCCC---CCcccE---EEEEeCCHHHHHH
Q 018554 15 VKLFVGQVPKHMTEAQLLAMFKE-------FALVDEVNIIKDKTT---RASRGC---CFVICPSRQEADK 71 (354)
Q Consensus 15 ~~lfVg~Lp~~~te~~L~~~F~~-------~G~v~~i~i~~d~~t---g~~~G~---aFV~f~~~~~A~~ 71 (354)
+.|.+-.|..+++++++.++.+. ...|.++.+-++... ++.+|| ..++|+|.++-+.
T Consensus 10 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (108)
T 1tr0_A 10 KHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQE 79 (108)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHH
Confidence 45555678888888876555433 345777877776543 455665 4578888777553
Done!