BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018555
         (354 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Q0X|A Chain A, AlphaBETA HYDROLASE FOLD PROTEIN OF UNKNOWN FUNCTION
 pdb|2Q0X|B Chain B, AlphaBETA HYDROLASE FOLD PROTEIN OF UNKNOWN FUNCTION
          Length = 335

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 76/193 (39%), Gaps = 9/193 (4%)

Query: 63  GPVVMGKNQ---FRGVLFKYGPKP---VQVAFKTGDYQQQVIFIGGLTDGFFATEYLEPL 116
           GP  M +++    +G LF Y   P   + V     D ++ V+++GG T+   + +Y   L
Sbjct: 1   GPGSMYRSRPEPVQGHLFTYYKDPYCKIPVFMMNMDARRCVLWVGGQTESLLSFDYFTNL 60

Query: 117 AIALDKERWSLVQFLMXXXXXXXXXXXLQQDAMEIDQLISYLINKDNSEGVVLLGHSTGC 176
           A  L  + W+ VQ  +              DA ++D LI  L+       V L   STG 
Sbjct: 61  AEELQGD-WAFVQVEVPSGKIGSGPQDHAHDAEDVDDLIGILLRDHCMNEVALFATSTGT 119

Query: 177 QDIVHYMXXXXXXXXXXXXXIFQAPVSDREYRATLPE-TAAMIDLASSMIREGRGSELMP 235
           Q +V  +             I    V D E     PE  AA  +    ++ EGRG + + 
Sbjct: 120 Q-LVFELLENSAHKSSITRVILHGVVCDPENPLFTPEGCAARKEHVEKLMAEGRGEDSLA 178

Query: 236 READPCSPITAQR 248
                  PIT  R
Sbjct: 179 MLKHYDIPITPAR 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,465,864
Number of Sequences: 62578
Number of extensions: 302093
Number of successful extensions: 687
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 1
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)