BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018556
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 138/296 (46%), Positives = 194/296 (65%), Gaps = 6/296 (2%)
Query: 60 SPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL 119
+ P S + ++ P +G RDFPPE MRLR +LF F +R FGFEE D PVLESE L
Sbjct: 16 TQGPGSMQMNMVETEPVQGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEEL 75
Query: 120 FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXX 179
+IRKAGEEI +Q++ F +G RVALRPE+TPSLAR ++ KG+S+ LP KW+++ QCW
Sbjct: 76 YIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARQLLAKGRSLLLPAKWYSIPQCWRY 135
Query: 180 XXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239
EHYQWNMDIIGV +V++E EL+ + T + +G+++ DVG +I+SRK+LQ
Sbjct: 136 EAITRGRRREHYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQT 195
Query: 240 VLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL- 298
V+ + F VC+I+DK+EKLP + + L + G+ ++ + LS+K++ E+
Sbjct: 196 VVEQAGVSADKFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITSTLSLKTIDEIA 255
Query: 299 -----EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNL 349
E EAV +L+ + E +G+ DW+ FDASVVRGLAYYTGIVFEG + N
Sbjct: 256 QRIGEEHEAVRELRDFITQIEAYGFGDWVIFDASVVRGLAYYTGIVFEGFDRDGNF 311
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 287 bits (734), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 137/293 (46%), Positives = 193/293 (65%), Gaps = 8/293 (2%)
Query: 56 ARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLE 115
A++ P + ++ ++ P +G RDFPPE MR R LF F ++ FGFEE D PVLE
Sbjct: 14 AQTQGPGSMQKNM--VETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLE 71
Query: 116 SEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQ 175
SE L+IRKAGEEI +Q++ F +G RVALRPE+TPSLARL++ KG+S+ LP KW+++ Q
Sbjct: 72 SEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQ 131
Query: 176 CWXXXXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRK 235
CW EHYQWNMDI+GV +V+AE EL+ + + +G+++ DVG +++SRK
Sbjct: 132 CWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRK 191
Query: 236 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 295
VLQ V+ + F VC+I+DK+EK+P + ++ L G+ ++ + LS+KS+
Sbjct: 192 VLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSI 251
Query: 296 TEL------EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
E+ E EAV +L+ F E +GY DW+ FDASVVRGLAYYTGIVFEG
Sbjct: 252 DEIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEG 304
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 149/282 (52%), Gaps = 18/282 (6%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
++ + +G RDF PED + ++F +E + FGF +DFP LE L+ K+GEE+
Sbjct: 3 RLQIEKIRGFRDFYPEDXDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELL 62
Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXE 189
Q Y F D+G R V L PE TPS R V + K + PL+W++ + W E
Sbjct: 63 QQTYSFVDKGGREVTLIPEATPSTVRXVTSR-KDLQRPLRWYSFPKVWRYEEPQAGRYRE 121
Query: 190 HYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV-GFRISSRKVLQEVL--RCHSI 246
HYQ+N DI G + A+AE+I+ + R+G+ D+ RI+SRK+ +E++ S
Sbjct: 122 HYQFNADIFGSDSPEADAEVIALASSILDRLGL--QDIYEIRINSRKIXEEIIGGXTSSD 179
Query: 247 PEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLS-------IKSLTELE 299
P +F IID+ K+ + + L+SAG+ E + + + S +T
Sbjct: 180 PFSVFS----IIDRYHKISREEFVDQLRSAGIGEDGVSXIADLCSGTRGIDEXARITGKS 235
Query: 300 GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
E +A + L +G + +++D S+VRGL+YYTGIVFE
Sbjct: 236 SEEIARXAAVEDLLASYGVKN-VRYDFSIVRGLSYYTGIVFE 276
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 33/296 (11%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
QK + PKGTRD+ P M +R +F + G E +D PV E + + K GE+
Sbjct: 63 QKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDS 122
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLAR-LVIQKGKSVSLPLKWFAVGQCWXXX--XXXXX 185
+ +Y +D+G ++LR +LT AR L + K ++ K + + + +
Sbjct: 123 K-LIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNI----KRYHIAKVYRRDNPAMTRG 177
Query: 186 XXXEHYQWNMDIIG-VPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCH 244
E YQ + DI G + +AE + + + I D +++ R++L +
Sbjct: 178 RYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI--GDFLVKVNDRRILDGMFAIC 235
Query: 245 SIPEHLFGKVCIIIDKIEKLPLDVIKNDL-------------------KSAGMSEAAIEE 285
+ + F +C +DK++K+ + +KN++ + G+S +E+
Sbjct: 236 GVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVS--LVEQ 293
Query: 286 LLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
LL+ + S + E + DLKLLF FG D I FD S+ RGL YYTG+++E
Sbjct: 294 LLQDPKL-SQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYE 348
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 33/292 (11%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQL 132
+ PKGTRD+ P M +R +F + G E +D PV E + + K GE+ + +
Sbjct: 14 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSK-LI 72
Query: 133 YCFEDRGNRRVALRPELTPSLAR-LVIQKGKSVSLPLKWFAVGQCWXXX--XXXXXXXXE 189
Y +D+G ++LR +LT AR L + K ++ K + + + + E
Sbjct: 73 YDLKDQGGELLSLRYDLTVPFARYLAMNKLTNI----KRYHIAKVYRRDNPAMTRGRYRE 128
Query: 190 HYQWNMDIIG-VPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
YQ + DI G + +AE + + + I D +++ R++L + + +
Sbjct: 129 FYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI--GDFLVKVNDRRILDGMFAICGVSD 186
Query: 249 HLFGKVCIIIDKIEKLPLDVIKNDL-------------------KSAGMSEAAIEELLRV 289
F +C +DK++K+ + +KN++ + G+S +E+LL+
Sbjct: 187 SKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVS--LVEQLLQD 244
Query: 290 LSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
+ S + E + DLKLLF FG D I FD S+ RGL YYTG+++E
Sbjct: 245 PKL-SQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYE 295
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 133/279 (47%), Gaps = 28/279 (10%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQL 132
P+GT+D PED + ++ + E+ + ++E+ P+ ES LF R G+ ++ ++
Sbjct: 5 PRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEM 64
Query: 133 YCFEDRGNRRVALRPELTPSLARLVIQKG--KSVSLPLKWFAVGQCWXXXXXXXXXXXEH 190
Y F+D+G+R + LRPE T ++ R I+ + + P+K + G + +
Sbjct: 65 YTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQF 124
Query: 191 YQWNMDIIGVPAVTAEAELISSIITFFKRIGITA-----SDVGFRISSRKVLQEVLRCHS 245
Q+ ++ IG + +AE+++ ++ ++ G+ + VG ++SRK E L H
Sbjct: 125 NQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVG-DMASRKEYNEALVKHF 183
Query: 246 IPE-HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVA 304
P H F C ++ P+ ++ D K + AI+ R+ L E+ A
Sbjct: 184 EPVIHEFCSDC--QSRLHTDPMRIL--DCK-VDRDKEAIKTAPRITDF-----LNEESKA 233
Query: 305 DLKLLFSLAEKFG--YSDWIQFDASVVRGLAYYTGIVFE 341
+ + + + G Y++ D ++VRGL YYT FE
Sbjct: 234 YYEQVKAYLDDLGIPYTE----DPNLVRGLDYYTHTAFE 268
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 128/279 (45%), Gaps = 18/279 (6%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLES-EALFIRKAGEEIRDQLYC 134
P G RD PE + + + E L+G++ ++ P LE E + + A + QL+
Sbjct: 13 PFGXRDTLPEWYKTKKNICDQXTEEINLWGYDXIETPTLEYYETVGVVSA--ILDQQLFK 70
Query: 135 FEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWN 194
D+ + LRP+ T +ARLV K + PL+ + E Q
Sbjct: 71 LLDQQGNTLVLRPDXTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLG 130
Query: 195 MDIIGVPAVTAEAELISSIITFFKRIGITASDV--GFRISSRKVLQEVL----RCHSIPE 248
+++IG +A+ E+I+ I KR G++ V G +L +V+ R +
Sbjct: 131 VELIGDGTASADGEVIALXIAALKRAGLSEFKVAIGHVGYVNALLXDVVGNEQRADRLRR 190
Query: 249 HLFGKVCI-IIDKIEKLPLDVIKN----DLKSAGMSEAAIEELLRVLSIKSLTELEGEAV 303
L+ K + + ++ L L I +L S AAIEE ++ TE A+
Sbjct: 191 FLYEKNYVGYREHVKSLNLSTIDKSRLXNLLSLRGGRAAIEEARGLIQ----TEKGKTAL 246
Query: 304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
A+ L+ + E +G S++++FD ++V +YYTG+VFEG
Sbjct: 247 AEXTKLYEVLESYGASEYVKFDLTLVLHXSYYTGVVFEG 285
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 130/307 (42%), Gaps = 38/307 (12%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
KI+ + P G +F P + RL +L + V +GF ++ P +E + K G +
Sbjct: 9 KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-GNQGD 67
Query: 130 DQLYCFE---------------DRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVG 174
+ +Y E D G+ AL+ + T LA + + ++ P +
Sbjct: 68 NIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQXD 127
Query: 175 QCWXXXXXXXXXXXEHYQWNMDIIGVPAVTA--EAELISSIITFFKRIGITASDVGFRIS 232
+ + Q ++D++G ++ +A+ + I F+ + I D RI+
Sbjct: 128 VVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQXPAIITEIFEAVNI--GDFVIRIN 185
Query: 233 SRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMS------------- 279
+RKVL + +I E IID +EK+ +K +L+ G++
Sbjct: 186 NRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKI 245
Query: 280 EAAIEELLRVLSIKSLTELEGE----AVADLKLLFSLAEKFGYSD-WIQFDASVVRGLAY 334
+ +++++L L S T E E V++L+ + + G D D ++ RGL Y
Sbjct: 246 DGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNY 305
Query: 335 YTGIVFE 341
YTG V+E
Sbjct: 306 YTGTVYE 312
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 120/278 (43%), Gaps = 27/278 (9%)
Query: 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLY 133
+GT+D +++R+ + ++V G E+ P+ E +F + G +R +++
Sbjct: 7 RGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMF 66
Query: 134 CFEDRGNRRVALRPELTPSLARLVIQKGKSV-SLPLKWFAVGQCWXXXXXXXXXXXEHYQ 192
F+DRG R + LRPE T ++ R ++ G V P++ + G + + +Q
Sbjct: 67 TFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQ 126
Query: 193 WNMDIIGVPAVTAEAELISSIITFFKRIGI--------TASDVGFRISSRKVLQEVLRCH 244
N + +G +AE + + K +G+ + D R L+EVL H
Sbjct: 127 VNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPH 186
Query: 245 SIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEG-EAV 303
+ + D E+L +N ++ + LL+ L ++ + + G EA
Sbjct: 187 --------REALSEDSKERLE----ENPMRILDSKSERDQALLKELGVRPMLDFLGEEAR 234
Query: 304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
A LK + E+ S + + ++VRGL YY FE
Sbjct: 235 AHLKEVERHLERL--SVPYELEPALVRGLDYYVRTAFE 270
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 119/287 (41%), Gaps = 24/287 (8%)
Query: 63 PVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122
P++ ++Q I +G D+ P + + + + V +G+ E+ P++E LF R
Sbjct: 7 PMAKNIQAI-----RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKR 61
Query: 123 KAGEE---IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXX 179
GE + ++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 62 AIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRH 121
Query: 180 XXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239
+ +Q ++ G+ +AELI +++ +GI+ V ++S L+
Sbjct: 122 ERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIS-EHVTLELNSIGSLE- 179
Query: 240 VLRCHSIPEHLFGKVCIIIDKIEKLPLD----VIKNDLKSAGMSEAAIEELLRVLSIKSL 295
+ + V + EKL D + N L+ ++ LL +L
Sbjct: 180 -----ARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLN--DAPAL 232
Query: 296 TE-LEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
+ L+ E+ L L E G + + +VRGL YY VFE
Sbjct: 233 GDYLDEESREHFAGLCKLLESAGIA--YTVNQRLVRGLDYYNRTVFE 277
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 129/297 (43%), Gaps = 24/297 (8%)
Query: 56 ARSLSPSPVSDDLQKID-VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVL 114
A++ P +++ +K++ + KG D P+D L + + + R +G++ + P++
Sbjct: 14 AQTQGPGSMTEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIV 73
Query: 115 ESEALFIRKAGEE---IRDQLYCFEDRGN-RRVALRPELTPSLARLVIQKGKSVSLPLKW 170
E LF R GE + ++Y F D N + LRPE T ++ R I+ P +
Sbjct: 74 EHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRL 133
Query: 171 FAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230
+ +G + + +Q ++ +G A+AE++ ++ +G+T +
Sbjct: 134 WYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTG--IKLE 191
Query: 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIK----NDLKSAGMSEAAIEEL 286
I+S + +E H + + +KL D + N L+ A++E+
Sbjct: 192 INSLGLAEER------AAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEI 245
Query: 287 LRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQF--DASVVRGLAYYTGIVFE 341
+R + L + G+ + F ++ ++ + F + +VRGL YY VFE
Sbjct: 246 VR--NAPKLIDFLGDVS---RAHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTVFE 297
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 114/278 (41%), Gaps = 19/278 (6%)
Query: 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
++ +G D+ P + + + + V +G+ E+ P++E LF R GE +
Sbjct: 4 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 63
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXX 188
++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 64 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 123
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
+ +Q ++ G+ +AELI +++ +GI+ V ++S L+ +
Sbjct: 124 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIS-EHVTLELNSIGSLE------ARAN 176
Query: 249 HLFGKVCIIIDKIEKLPLD----VIKNDLKSAGMSEAAIEELLRVLSIKSLTE-LEGEAV 303
+ V + EKL D + N L+ ++ LL +L + L+ E+
Sbjct: 177 YRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLN--DAPALGDYLDEESR 234
Query: 304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
L L E G + + +VRGL YY VFE
Sbjct: 235 EHFAGLCKLLESAGIA--YTVNQRLVRGLDYYNRTVFE 270
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 114/278 (41%), Gaps = 19/278 (6%)
Query: 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
++ +G D+ P + + + + V +G+ E+ P++E LF R GE +
Sbjct: 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 62
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXX 188
++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 63 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 122
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
+ +Q ++ G+ +AELI +++ +GI+ V ++S L+ +
Sbjct: 123 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIS-EHVTLELNSIGSLE------ARAN 175
Query: 249 HLFGKVCIIIDKIEKLPLD----VIKNDLKSAGMSEAAIEELLRVLSIKSLTE-LEGEAV 303
+ V + EKL D + N L+ ++ LL +L + L+ E+
Sbjct: 176 YRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLN--DAPALGDYLDEESR 233
Query: 304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
L L E G + + +VRGL YY VFE
Sbjct: 234 EHFAGLCKLLESAGIA--YTVNQRLVRGLDYYNRTVFE 269
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 373
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 119/312 (38%), Gaps = 57/312 (18%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR-KAGEEIRDQ 131
+ P G +D P+ + R + G+E V + E +R ++ E RD
Sbjct: 23 ADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDW 82
Query: 132 LYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHY 191
+ F D G VALRPE+TPS+AR+ + + P++W C+
Sbjct: 83 IRLF-DGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRW-----CYCERVYRRTDDPASL 136
Query: 192 QW------NMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR-----ISSRKVLQEV 240
W +G+ + EA + + + + ++ G R +S +++ +
Sbjct: 137 SWASGKAAESTQVGIERIGEEAS-VDVDMDVLRLLHEASAAAGVRHHRIVVSHARLVPRL 195
Query: 241 LRCHSIPEHLFGK--VCIIIDKIEKL----------PLDVIKNDL-----------KSAG 277
L I L C+ + +D++ N L +S
Sbjct: 196 LDALGISASLSRAFLACLTSGNYVQFRELWQLHAAKDVDLLANLLTWSPAERDAAKRSRE 255
Query: 278 MSEAAIEELLRVLSIKSLTELEGEAVADL----KLLFSLAEKFG----YSDWIQFDASVV 329
S+ +E LLR ++ A AD+ + L LAE SD + FD ++
Sbjct: 256 ASDRELEALLR-------DAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALH 308
Query: 330 RGLAYYTGIVFE 341
R L YYTG+VFE
Sbjct: 309 RELDYYTGLVFE 320
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N +G
Sbjct: 133 CLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCT 192
Query: 204 TAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 193 R---ENLESIITDFLNHLGIDFKIVG 215
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N +G
Sbjct: 133 CLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCT 192
Query: 204 TAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 193 R---ENLESIITDFLNHLGIDFKIVG 215
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 77 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 131
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHY-QWNMDIIGVPA 202
LRP LTP+L + + +++ P+K F +G C+ EH ++ M +
Sbjct: 132 CLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCY----RKESDGKEHLEEFTMLVFWQMG 187
Query: 203 VTAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 188 SGCTRENLESIITDFLNHLGIDFKIVG 214
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERXGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N G
Sbjct: 133 CLRPXLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTXLNFCQXGSGCT 192
Query: 204 TAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 193 R---ENLESIITDFLNHLGIDFKIVG 215
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|B Chain B, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|C Chain C, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|D Chain D, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|A Chain A, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|B Chain B, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|C Chain C, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|D Chain D, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 344
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXX 188
+++++ F + + LR + T L RL Q S S +F G+ +
Sbjct: 81 QEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYF--GKIFRKEKRHKGRST 138
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
E+YQ +++ G A +E E++S + +++G+ + F I S K Q + +
Sbjct: 139 ENYQIGIELFGESADKSELEILSLALQVIEQLGLNKT--VFEIGSAKFFQRLCQLADGST 196
Query: 249 HLFGKVCIIIDKIEKLPLDVIKNDLKS---AGMSEAAI-EELLRVLSIKSLTELEGEAVA 304
L ++ + D + L + KN+ + E I EL R+ ++ + T+ + ++
Sbjct: 197 ELLTELLLKKD-LSGLNAFIEKNNFSKELRGLLKEIFITNELSRLENLVTNTK-DDVLIS 254
Query: 305 DLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESN 348
L +EK I D +V + YYT ++F+ +N
Sbjct: 255 SFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSSAAN 298
>pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
pdb|2QGY|B Chain B, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
Length = 391
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 243 CHSIPE----HLFGKVCIIIDKIEKLPLDVIKNDL---KSAGMSEAAIEELLRVLSIKSL 295
C SIP +F K +LP D+I N KSAG+ E++L LSI SL
Sbjct: 318 CSSIPNSEKAEIFPDYINFSKKFCELPFDIIDNKAHINKSAGLGIVIHEDILSELSIYSL 377
Query: 296 TE 297
E
Sbjct: 378 DE 379
>pdb|4AT7|A Chain A, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex
pdb|4AT8|A Chain A, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex With Atp
pdb|4AT8|C Chain C, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex With Atp
pdb|4AT9|A Chain A, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex With Utp
pdb|4ATB|A Chain A, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex With Ctp
pdb|4ATB|C Chain C, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
Complex With Ctp
Length = 364
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 267 DVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSL 312
+VI N + + G E IEE+ +V S K T G VADL ++ +
Sbjct: 57 NVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKI 102
>pdb|2RCK|A Chain A, Crystal Structure Of Juvenile Hormone Binding Protein From
Galleria Mellonella Hemolymph
pdb|2RCK|B Chain B, Crystal Structure Of Juvenile Hormone Binding Protein From
Galleria Mellonella Hemolymph
Length = 225
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 261 IEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLT-ELEGEAVADLKLLFSLAEKF-GY 318
IEK+ L+V N+LK G I V K++ + + A+ KL+ L + Y
Sbjct: 53 IEKINLNVRYNNLKVTGFKNQKISHFTLVRDTKAVNFKTKVNFTAEGKLVIELPKSSKTY 112
Query: 319 SDWIQFDASVVRGLAYYTGIVFEGRKVE 346
+ + +AS G AY + + + VE
Sbjct: 113 TGEVTIEASAEGGAAYSYSVKTDDKGVE 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,972,512
Number of Sequences: 62578
Number of extensions: 394800
Number of successful extensions: 842
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 29
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)