Query 018556
Match_columns 354
No_of_seqs 203 out of 1571
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 10:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02530 histidine-tRNA ligase 100.0 7.6E-62 1.6E-66 494.2 36.6 313 38-352 37-355 (487)
2 KOG1936 Histidyl-tRNA syntheta 100.0 2.2E-62 4.8E-67 469.8 24.9 320 1-346 1-346 (518)
3 COG0124 HisS Histidyl-tRNA syn 100.0 9.2E-58 2E-62 452.0 26.8 272 71-352 2-289 (429)
4 PRK12420 histidyl-tRNA synthet 100.0 1.1E-56 2.5E-61 449.6 30.4 276 70-349 1-289 (423)
5 PRK12292 hisZ ATP phosphoribos 100.0 1.2E-56 2.7E-61 445.0 29.6 270 72-348 2-284 (391)
6 PLN02972 Histidyl-tRNA synthet 100.0 3.1E-56 6.7E-61 463.1 32.7 276 70-351 324-618 (763)
7 PRK12421 ATP phosphoribosyltra 100.0 9.1E-55 2E-59 431.3 31.3 270 73-348 7-291 (392)
8 TIGR00443 hisZ_biosyn_reg ATP 100.0 5.6E-53 1.2E-57 407.6 30.5 262 80-347 1-275 (314)
9 PF13393 tRNA-synt_His: Histid 100.0 1.7E-52 3.6E-57 403.1 28.4 265 78-349 1-280 (311)
10 PRK12295 hisZ ATP phosphoribos 100.0 5.7E-49 1.2E-53 386.8 31.3 253 88-347 5-331 (373)
11 TIGR00442 hisS histidyl-tRNA s 100.0 6.1E-49 1.3E-53 390.6 29.9 263 74-347 1-270 (397)
12 CHL00201 syh histidine-tRNA sy 100.0 5.1E-49 1.1E-53 394.9 28.3 258 73-346 4-274 (430)
13 PRK12293 hisZ ATP phosphoribos 100.0 1.1E-48 2.5E-53 371.5 28.9 249 70-347 2-250 (281)
14 cd00773 HisRS-like_core Class 100.0 3E-46 6.6E-51 351.7 26.5 220 86-347 1-220 (261)
15 COG3705 HisZ ATP phosphoribosy 100.0 2.4E-45 5.1E-50 357.6 21.7 268 71-347 1-281 (390)
16 PRK00037 hisS histidyl-tRNA sy 100.0 9.5E-45 2.1E-49 362.1 24.4 251 70-347 1-271 (412)
17 PRK12294 hisZ ATP phosphoribos 100.0 5.7E-40 1.2E-44 309.7 26.6 237 85-348 5-250 (272)
18 PRK00413 thrS threonyl-tRNA sy 100.0 2.3E-31 4.9E-36 279.5 8.5 239 74-343 257-505 (638)
19 TIGR00418 thrS threonyl-tRNA s 99.9 5.8E-26 1.3E-30 235.4 19.8 204 76-343 189-402 (563)
20 PRK12305 thrS threonyl-tRNA sy 99.9 9.1E-27 2E-31 242.0 13.0 160 74-236 193-361 (575)
21 PRK09194 prolyl-tRNA synthetas 99.9 1.4E-25 2.9E-30 232.5 15.8 189 48-241 4-206 (565)
22 cd00779 ProRS_core_prok Prolyl 99.9 1.5E-25 3.2E-30 210.6 11.3 167 71-241 15-190 (255)
23 TIGR00409 proS_fam_II prolyl-t 99.9 7E-25 1.5E-29 226.4 15.4 184 48-239 4-204 (568)
24 PRK14799 thrS threonyl-tRNA sy 99.9 5.1E-25 1.1E-29 225.8 13.5 226 74-319 155-389 (545)
25 KOG1035 eIF-2alpha kinase GCN2 99.9 8.2E-24 1.8E-28 225.0 21.7 257 80-348 925-1201(1351)
26 cd00771 ThrRS_core Threonyl-tR 99.9 2.7E-24 5.9E-29 206.4 16.5 158 74-235 17-183 (298)
27 PRK12444 threonyl-tRNA synthet 99.9 3.2E-24 7E-29 225.4 18.5 155 74-234 261-425 (639)
28 cd00670 Gly_His_Pro_Ser_Thr_tR 99.9 1.8E-24 3.9E-29 199.6 13.3 150 86-238 1-161 (235)
29 cd00772 ProRS_core Prolyl-tRNA 99.9 9.7E-23 2.1E-27 192.4 16.1 160 71-234 16-190 (264)
30 PLN02908 threonyl-tRNA synthet 99.9 9E-23 1.9E-27 215.6 12.7 183 74-263 308-499 (686)
31 PRK12325 prolyl-tRNA synthetas 99.9 7.4E-22 1.6E-26 198.9 13.1 172 48-223 4-191 (439)
32 cd00774 GlyRS-like_core Glycyl 99.9 3.6E-21 7.8E-26 180.8 13.0 148 74-232 19-177 (254)
33 PF00587 tRNA-synt_2b: tRNA sy 99.8 2.7E-19 5.9E-24 158.4 13.5 144 89-235 1-154 (173)
34 cd00778 ProRS_core_arch_euk Pr 99.8 1.8E-19 3.9E-24 169.9 10.3 154 70-223 15-182 (261)
35 TIGR02367 PylS pyrrolysyl-tRNA 99.8 4.3E-18 9.3E-23 168.0 14.2 137 87-233 239-378 (453)
36 TIGR00408 proS_fam_I prolyl-tR 99.8 2.9E-18 6.2E-23 174.2 10.4 153 70-223 21-188 (472)
37 PRK08661 prolyl-tRNA synthetas 99.7 1.1E-17 2.4E-22 170.2 11.9 152 69-223 26-193 (477)
38 KOG2324 Prolyl-tRNA synthetase 99.7 9E-17 2E-21 152.7 9.6 172 50-223 11-197 (457)
39 PRK04172 pheS phenylalanyl-tRN 99.7 2.1E-16 4.6E-21 161.3 11.1 139 80-223 225-404 (489)
40 COG0442 ProS Prolyl-tRNA synth 99.7 3.8E-16 8.1E-21 157.8 11.7 149 71-223 31-191 (500)
41 cd00770 SerRS_core Seryl-tRNA 99.6 3.2E-15 6.9E-20 143.6 12.4 144 76-223 41-196 (297)
42 PTZ00326 phenylalanyl-tRNA syn 99.6 6E-15 1.3E-19 148.6 14.0 167 80-249 221-461 (494)
43 PRK09537 pylS pyrolysyl-tRNA s 99.6 4.8E-15 1.1E-19 146.6 13.0 131 90-230 206-340 (417)
44 cd00768 class_II_aaRS-like_cor 99.6 5E-14 1.1E-18 126.8 14.6 129 90-222 2-134 (211)
45 PLN02837 threonine-tRNA ligase 99.5 4.6E-14 1E-18 147.8 14.3 161 71-234 229-400 (614)
46 PRK04173 glycyl-tRNA synthetas 99.5 6.5E-14 1.4E-18 141.8 13.7 154 76-230 27-254 (456)
47 PRK03991 threonyl-tRNA synthet 99.5 9.9E-13 2.2E-17 137.2 16.0 167 76-247 216-401 (613)
48 COG0441 ThrS Threonyl-tRNA syn 99.4 1.9E-12 4.2E-17 133.3 10.8 157 75-235 208-373 (589)
49 TIGR00414 serS seryl-tRNA synt 99.4 5.8E-12 1.3E-16 126.3 14.0 143 77-223 163-317 (418)
50 PRK05431 seryl-tRNA synthetase 99.3 1.9E-11 4E-16 123.0 14.1 144 76-223 159-315 (425)
51 KOG1637 Threonyl-tRNA syntheta 99.2 2.9E-11 6.2E-16 118.8 9.9 159 71-234 176-343 (560)
52 PRK09350 poxB regulator PoxA; 99.1 6.4E-11 1.4E-15 114.3 6.9 119 86-218 4-125 (306)
53 PRK00960 seryl-tRNA synthetase 99.1 2.8E-10 6.1E-15 116.0 10.9 152 71-223 207-397 (517)
54 PLN02678 seryl-tRNA synthetase 99.0 3.3E-09 7.1E-14 106.9 12.9 146 79-229 166-325 (448)
55 TIGR00415 serS_MJ seryl-tRNA s 99.0 8.7E-09 1.9E-13 104.2 14.4 159 71-233 207-404 (520)
56 TIGR00389 glyS_dimeric glycyl- 98.9 3.5E-09 7.5E-14 108.8 9.6 124 76-202 26-221 (551)
57 cd00669 Asp_Lys_Asn_RS_core As 98.9 6.1E-09 1.3E-13 98.8 10.4 98 88-200 2-102 (269)
58 PRK14894 glycyl-tRNA synthetas 98.9 1.1E-08 2.4E-13 103.1 12.5 151 76-229 29-232 (539)
59 COG0423 GRS1 Glycyl-tRNA synth 98.9 4.8E-09 1E-13 105.3 9.7 125 76-203 29-226 (558)
60 PLN02320 seryl-tRNA synthetase 98.8 1.6E-08 3.5E-13 102.7 10.1 152 76-233 220-386 (502)
61 PF01409 tRNA-synt_2d: tRNA sy 98.8 1.7E-07 3.8E-12 87.7 14.1 131 88-223 17-157 (247)
62 TIGR00468 pheS phenylalanyl-tR 98.7 3E-07 6.6E-12 88.3 12.9 142 71-223 57-204 (294)
63 cd00496 PheRS_alpha_core Pheny 98.6 8.6E-07 1.9E-11 81.5 14.2 123 90-221 3-132 (218)
64 PLN02734 glycyl-tRNA synthetas 98.6 1.3E-07 2.8E-12 99.0 9.7 125 75-202 97-313 (684)
65 cd00777 AspRS_core Asp tRNA sy 98.5 8.2E-07 1.8E-11 84.8 11.4 100 88-201 2-103 (280)
66 PRK00488 pheS phenylalanyl-tRN 98.5 3.6E-06 7.8E-11 81.8 15.1 138 71-220 93-236 (339)
67 cd00776 AsxRS_core Asx tRNA sy 98.4 1.7E-06 3.6E-11 84.3 10.9 102 85-201 22-124 (322)
68 PLN02853 Probable phenylalanyl 98.4 5.5E-06 1.2E-10 83.9 13.7 161 85-248 218-445 (492)
69 COG0172 SerS Seryl-tRNA synthe 98.4 4.2E-06 9.2E-11 83.5 12.1 145 75-223 162-318 (429)
70 TIGR00462 genX lysyl-tRNA synt 98.2 3.2E-06 6.9E-11 81.7 8.3 101 88-200 2-106 (304)
71 COG0016 PheS Phenylalanyl-tRNA 98.2 2.6E-05 5.6E-10 75.6 13.8 142 71-221 96-244 (335)
72 PF00152 tRNA-synt_2: tRNA syn 98.1 3.2E-05 6.9E-10 75.6 12.5 104 86-202 21-129 (335)
73 TIGR00459 aspS_bact aspartyl-t 98.1 2.5E-05 5.5E-10 81.3 11.9 102 86-201 137-240 (583)
74 cd00775 LysRS_core Lys_tRNA sy 98.1 5.1E-05 1.1E-09 74.1 12.8 102 86-200 7-109 (329)
75 PRK06462 asparagine synthetase 98.0 3E-05 6.6E-10 75.9 10.1 107 85-200 28-138 (335)
76 PRK00476 aspS aspartyl-tRNA sy 98.0 5.6E-05 1.2E-09 79.1 11.4 100 86-201 140-243 (588)
77 TIGR00458 aspS_arch aspartyl-t 97.9 7.6E-05 1.7E-09 75.4 11.7 102 86-201 132-234 (428)
78 PLN02903 aminoacyl-tRNA ligase 97.9 7.8E-05 1.7E-09 78.4 11.5 101 86-201 202-306 (652)
79 COG2269 Truncated, possibly in 97.9 0.00018 3.9E-09 67.8 12.3 155 86-261 15-176 (322)
80 PRK00484 lysS lysyl-tRNA synth 97.9 0.00014 3E-09 74.7 12.8 102 86-200 171-273 (491)
81 PRK03932 asnC asparaginyl-tRNA 97.9 8.8E-05 1.9E-09 75.4 11.1 115 86-218 132-255 (450)
82 PRK12820 bifunctional aspartyl 97.8 0.00012 2.5E-09 77.8 11.1 104 85-201 154-258 (706)
83 PLN02850 aspartate-tRNA ligase 97.8 9.9E-05 2.2E-09 76.4 10.3 101 86-200 224-326 (530)
84 PRK12445 lysyl-tRNA synthetase 97.8 0.00014 3.1E-09 74.8 11.1 102 86-200 183-285 (505)
85 PRK05159 aspC aspartyl-tRNA sy 97.8 0.0002 4.2E-09 72.7 12.0 103 85-201 134-237 (437)
86 PRK09616 pheT phenylalanyl-tRN 97.8 0.00032 7E-09 73.2 13.2 132 87-222 358-491 (552)
87 PTZ00385 lysyl-tRNA synthetase 97.7 0.00028 6E-09 74.3 12.1 102 86-200 232-334 (659)
88 PTZ00417 lysine-tRNA ligase; P 97.7 0.00026 5.6E-09 73.9 11.7 100 86-200 252-354 (585)
89 COG0173 AspS Aspartyl-tRNA syn 97.7 0.00031 6.8E-09 71.6 11.6 103 86-200 140-242 (585)
90 PLN02502 lysyl-tRNA synthetase 97.7 0.00025 5.4E-09 73.7 11.1 102 86-200 228-330 (553)
91 TIGR00499 lysS_bact lysyl-tRNA 97.6 0.00027 5.9E-09 72.7 10.2 102 86-200 171-273 (496)
92 KOG2509 Seryl-tRNA synthetase 97.6 0.00035 7.6E-09 69.2 10.2 145 75-223 171-331 (455)
93 PTZ00401 aspartyl-tRNA synthet 97.6 0.00029 6.2E-09 73.2 9.9 101 86-200 212-314 (550)
94 TIGR00457 asnS asparaginyl-tRN 97.6 0.00038 8.2E-09 70.9 10.6 102 86-201 135-245 (453)
95 TIGR00470 sepS O-phosphoseryl- 97.5 0.00049 1.1E-08 69.3 9.5 105 141-249 181-316 (533)
96 KOG2298 Glycyl-tRNA synthetase 97.5 0.00011 2.4E-09 73.3 4.5 124 76-202 35-247 (599)
97 KOG2784 Phenylalanyl-tRNA synt 97.5 9.7E-05 2.1E-09 71.5 3.7 131 90-223 214-387 (483)
98 KOG2411 Aspartyl-tRNA syntheta 97.4 0.00051 1.1E-08 69.0 8.2 103 87-201 178-281 (628)
99 PTZ00425 asparagine-tRNA ligas 97.4 0.0015 3.3E-08 68.1 12.0 33 86-118 214-246 (586)
100 cd00769 PheRS_beta_core Phenyl 97.3 0.0014 3.1E-08 59.1 9.5 127 91-222 3-139 (198)
101 PRK02983 lysS lysyl-tRNA synth 97.3 0.00091 2E-08 74.8 9.7 101 87-200 770-871 (1094)
102 PLN02603 asparaginyl-tRNA synt 97.2 0.0027 5.9E-08 66.2 11.4 101 87-200 226-355 (565)
103 PLN02221 asparaginyl-tRNA synt 97.1 0.0048 1E-07 64.4 12.2 33 86-118 170-202 (572)
104 PLN02788 phenylalanine-tRNA sy 97.1 0.0078 1.7E-07 60.2 13.0 131 82-222 62-213 (402)
105 PLN02532 asparagine-tRNA synth 97.1 0.0046 9.9E-08 65.0 11.6 32 86-117 234-265 (633)
106 COG0017 AsnS Aspartyl/asparagi 97.0 0.0058 1.3E-07 61.4 11.1 100 86-201 133-234 (435)
107 KOG4163 Prolyl-tRNA synthetase 96.9 0.0025 5.4E-08 63.2 7.5 148 68-220 79-244 (551)
108 PRK07080 hypothetical protein; 96.6 0.046 1E-06 52.7 13.0 160 74-238 31-223 (317)
109 COG1190 LysU Lysyl-tRNA synthe 96.6 0.021 4.5E-07 58.1 11.0 142 87-246 180-335 (502)
110 TIGR00471 pheT_arch phenylalan 96.5 0.033 7.1E-07 58.3 12.2 132 87-223 361-494 (551)
111 PLN02265 probable phenylalanyl 95.7 0.064 1.4E-06 56.6 10.2 131 87-223 396-531 (597)
112 KOG1885 Lysyl-tRNA synthetase 95.3 0.0089 1.9E-07 59.9 1.8 98 86-196 224-322 (560)
113 KOG0554 Asparaginyl-tRNA synth 94.3 0.11 2.5E-06 51.3 6.7 106 85-204 130-243 (446)
114 TIGR00472 pheT_bact phenylalan 93.9 0.51 1.1E-05 51.6 11.5 125 95-223 498-632 (798)
115 TIGR00469 pheS_mito phenylalan 93.8 0.51 1.1E-05 48.0 10.4 100 90-194 44-160 (460)
116 PRK00629 pheT phenylalanyl-tRN 93.6 0.54 1.2E-05 51.4 10.9 131 87-223 486-625 (791)
117 KOG0556 Aspartyl-tRNA syntheta 93.5 0.18 3.9E-06 50.1 6.3 112 88-217 229-342 (533)
118 CHL00192 syfB phenylalanyl-tRN 92.9 0.68 1.5E-05 49.9 10.3 125 87-222 397-532 (704)
119 PRK06253 O-phosphoseryl-tRNA s 92.2 0.61 1.3E-05 48.1 8.3 82 139-223 180-263 (529)
120 COG2024 Phenylalanyl-tRNA synt 89.1 0.21 4.6E-06 49.2 1.7 82 140-223 180-262 (536)
121 COG0072 PheT Phenylalanyl-tRNA 88.0 1.9 4E-05 46.2 8.2 91 87-180 350-442 (650)
122 KOG0555 Asparaginyl-tRNA synth 75.0 11 0.00024 37.7 7.3 98 87-199 243-341 (545)
123 PF02797 Chal_sti_synt_C: Chal 54.6 1.1E+02 0.0025 26.3 9.0 69 190-258 21-94 (151)
124 PRK07535 methyltetrahydrofolat 41.6 55 0.0012 30.9 5.4 125 186-330 30-165 (261)
125 cd00423 Pterin_binding Pterin 40.5 15 0.00033 34.4 1.4 149 167-331 11-178 (258)
126 PF15640 Tox-MPTase4: Metallop 38.7 55 0.0012 27.5 4.2 36 302-339 20-62 (132)
127 PF00809 Pterin_bind: Pterin b 38.1 40 0.00087 30.6 3.8 32 300-331 143-175 (210)
128 PF08328 ASL_C: Adenylosuccina 37.7 96 0.0021 25.7 5.5 52 236-289 58-109 (115)
129 PF03599 CdhD: CO dehydrogenas 36.5 49 0.0011 33.2 4.4 111 193-329 68-180 (386)
130 PLN03152 hypothetical protein; 35.7 35 0.00076 31.5 2.9 56 1-62 1-65 (241)
131 cd00673 AlaRS_core Alanyl-tRNA 35.7 66 0.0014 30.0 4.8 114 91-232 2-123 (232)
132 COG5016 Pyruvate/oxaloacetate 30.1 2.6E+02 0.0056 28.5 8.1 119 210-337 30-160 (472)
133 KOG2472 Phenylalanyl-tRNA synt 30.0 1.7E+02 0.0037 30.5 6.9 53 143-196 443-496 (578)
134 PRK04452 acetyl-CoA decarbonyl 30.0 2E+02 0.0043 28.2 7.3 29 301-329 184-213 (319)
135 PF13744 HTH_37: Helix-turn-he 28.4 2.6E+02 0.0056 21.0 6.8 15 305-319 60-74 (80)
136 PRK14136 recX recombination re 28.1 3.6E+02 0.0078 26.3 8.5 27 263-289 225-251 (309)
137 PF02091 tRNA-synt_2e: Glycyl- 27.1 2E+02 0.0042 27.5 6.3 54 165-223 43-100 (284)
138 TIGR03683 A-tRNA_syn_arch alan 24.6 44 0.00096 37.3 1.9 108 90-224 58-177 (902)
139 PRK04165 acetyl-CoA decarbonyl 24.5 2.3E+02 0.0051 29.1 7.0 25 303-328 211-235 (450)
140 PRK01584 alanyl-tRNA synthetas 24.0 5.3E+02 0.011 27.6 9.6 131 91-250 4-151 (594)
141 PHA03373 tegument protein; Pro 23.1 2.8E+02 0.0061 25.8 6.4 58 188-245 16-73 (247)
142 COG0013 AlaS Alanyl-tRNA synth 22.9 2.8E+02 0.0061 31.0 7.5 134 90-250 8-150 (879)
143 COG5499 Predicted transcriptio 22.3 2.5E+02 0.0053 23.2 5.3 49 232-280 60-115 (120)
144 PF02631 RecX: RecX family; I 21.4 4.1E+02 0.0088 21.4 6.8 61 206-288 7-67 (121)
145 TIGR00381 cdhD CO dehydrogenas 21.3 1.4E+02 0.0031 30.0 4.5 31 303-333 251-285 (389)
146 PLN03173 chalcone synthase; Pr 21.1 4.7E+02 0.01 26.1 8.4 55 207-261 277-334 (391)
147 PLN03172 chalcone synthase fam 20.2 4.8E+02 0.01 26.1 8.2 45 208-252 278-325 (393)
No 1
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=7.6e-62 Score=494.19 Aligned_cols=313 Identities=72% Similarity=1.177 Sum_probs=279.8
Q ss_pred chhhhcccccccCCCCCCcccCCCCCCCcccccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccch
Q 018556 38 RSLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE 117 (354)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~ 117 (354)
.-.||+++++. .+++++.+..++..++.+.+++.++|+|++|++|.++..++++++.++++|++|||++|+||+||++
T Consensus 37 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~ 114 (487)
T PLN02530 37 GGRCAASAAAG--GGRSGGTTAPPSVQEDGKPKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESE 114 (487)
T ss_pred ccchhhccccc--cccCCCCCCCCCCccccccccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchH
Confidence 34566655444 4555555555554467888888999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeE
Q 018556 118 ALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDI 197 (354)
Q Consensus 118 ~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei 197 (354)
++|..+.|++..++||+|.|++|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++++.||+|||+|+|+|+
T Consensus 115 el~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEi 194 (487)
T PLN02530 115 ELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDI 194 (487)
T ss_pred HHhccccCcccccceEEEECCCCCEEecCCCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeE
Confidence 99988778878899999999999999999999999999999987656789999999999999999999999999999999
Q ss_pred eccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcC
Q 018556 198 IGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAG 277 (354)
Q Consensus 198 ~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g 277 (354)
||.+++.+|+|||.++.++|+.+|+++.+++|+|||+++++++|+.++++++.+..++.++|++++.+.+++++.|+..|
T Consensus 195 iG~~~~~aDaEvi~l~~~~l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~ 274 (487)
T PLN02530 195 IGVPGVEAEAELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLG 274 (487)
T ss_pred eCCCCcchhHHHHHHHHHHHHHcCCCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcC
Confidence 99999999999999999999999997446999999999999999999999988899999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcCCChhhHH------HHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCCccc
Q 018556 278 MSEAAIEELLRVLSIKSLTELE------GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWG 351 (354)
Q Consensus 278 ~s~~~~~~L~~l~~~~~l~~l~------~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~~~~ 351 (354)
++.+.++.+++++.+..++.+. .+++++|++++++|+.+|+++++.|||+++||++||||+|||+|+.++..++
T Consensus 275 ~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~ 354 (487)
T PLN02530 275 VSEEAIEGILDVLSLKSLDDLEALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRA 354 (487)
T ss_pred CCHHHHHHHHHHHhccCHHHHHHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCcce
Confidence 9999899888888766544332 4699999999999999999988999999999999999999999986555555
Q ss_pred c
Q 018556 352 W 352 (354)
Q Consensus 352 ~ 352 (354)
|
T Consensus 355 I 355 (487)
T PLN02530 355 I 355 (487)
T ss_pred e
Confidence 4
No 2
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-62 Score=469.84 Aligned_cols=320 Identities=36% Similarity=0.607 Sum_probs=282.2
Q ss_pred CCcccc---ccccccccccc----ccCCCCCCcccCCccccCCcchhhhcccccccCCCCCCcccCCCCCCCcccccccC
Q 018556 1 MPAIHS---SLSFYMKPLFL----SNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDV 73 (354)
Q Consensus 1 ~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
|.++|. +.+....|+++ ++|++ +.+++.+. +.+||+. |..++++. ..+.++.+
T Consensus 1 m~a~~~~~~~~~~~~~~~llr~l~~~~a~-~~~~~~~v------a~~~~~~----~~~~~~~~---------~~~~k~~l 60 (518)
T KOG1936|consen 1 MMAIHLVTTRESISFQGILLRDLKSSCAS-PEQISEEV------ALILALK----NGLGRSGS---------IFKKKFSL 60 (518)
T ss_pred CcchHHHHHHHHHhhhHHHHhhhhhccCC-hhHhhHHH------HHHHHHh----cccCCCCC---------CcCcceee
Confidence 566664 44455666665 44444 56555554 8999883 33322221 25778999
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHH
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
++|+||+||.|+++.+++++.+++.++|++||++.|+||+||-.+++..++|++. +.+|.+.|++|+.++||||+|+|+
T Consensus 61 KtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLRYDLTVPf 139 (518)
T KOG1936|consen 61 KTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLRYDLTVPF 139 (518)
T ss_pred cCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEeecccccHH
Confidence 9999999999999999999999999999999999999999999999999999985 889999999999999999999999
Q ss_pred HHHHHHhCCCCCCCeEEEEecceeecCCC--CCCcccceEEeeeeEecc-CChhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q 018556 154 ARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGV-PAVTAEAELISSIITFFKRIGITASDVGFR 230 (354)
Q Consensus 154 aR~~a~~~~~~~~PlR~~y~g~VfR~e~~--~~Gr~rEf~Q~g~Ei~g~-~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~ 230 (354)
|||+|++.. ..+|+|+|++|||.+.| .+||+|||+||++||.|. +...+|+|+++++.++|+.||+. ||.|+
T Consensus 140 ARylAmNki---~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Ig--d~~iK 214 (518)
T KOG1936|consen 140 ARYLAMNKI---TSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIG--DYGIK 214 (518)
T ss_pred HHHHHHccc---ccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCcc--ceEEE
Confidence 999999853 58999999999999977 699999999999999995 66679999999999999999998 89999
Q ss_pred eCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHH-HcCCCHHHHHHHHHhhcCCChhhH-----------
Q 018556 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLK-SAGMSEAAIEELLRVLSIKSLTEL----------- 298 (354)
Q Consensus 231 lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~-~~g~s~~~~~~L~~l~~~~~l~~l----------- 298 (354)
+||++|++++++-||+|++.++.+|..+||++|.+|+++++++- +.|++++.++++.+.+.+++..+|
T Consensus 215 vNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~l~ 294 (518)
T KOG1936|consen 215 VNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPKLS 294 (518)
T ss_pred ecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999884 599999999999999888754332
Q ss_pred ----HHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECC
Q 018556 299 ----EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVE 346 (354)
Q Consensus 299 ----~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~ 346 (354)
+.+++++|++++++++.+|++++|.||+|++||+|||||+|||++..+
T Consensus 295 ~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~ 346 (518)
T KOG1936|consen 295 QNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRG 346 (518)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeecc
Confidence 168999999999999999999999999999999999999999999976
No 3
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-58 Score=451.99 Aligned_cols=272 Identities=35% Similarity=0.600 Sum_probs=238.1
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCCCCeEeeCC
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRP 147 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~G~~l~LRp 147 (354)
...+.|+||+|++|.++..++++++.++++|++|||++|.||+||+.++|.+++|+. +.++||.|.|++|+.++|||
T Consensus 2 ~~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRp 81 (429)
T COG0124 2 MKIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRP 81 (429)
T ss_pred CCccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecc
Confidence 456889999999999999999999999999999999999999999999999888886 67999999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcE
Q 018556 148 ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (354)
Q Consensus 148 D~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~ 227 (354)
|+|+|+||+++.+....+.|+|+||+|+|||+|+||.||+|||+|+|+|+||.+++.+|||||+++.+++++||+. ++
T Consensus 82 e~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~--~~ 159 (429)
T COG0124 82 ELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIG--GF 159 (429)
T ss_pred cCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCC--cE
Confidence 9999999999999877778999999999999999999999999999999999999999999999999999999998 69
Q ss_pred EEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCC------------h
Q 018556 228 GFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS------------L 295 (354)
Q Consensus 228 ~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~------------l 295 (354)
+|+|||+++++++++.+|+ +++..|++++|++++. ++..|.+.+......+.|..+....+ +
T Consensus 160 ~l~iN~~g~l~~~~~~~gi--~~~~~l~~~ldk~~k~----~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i~ 233 (429)
T COG0124 160 TLEINSRGILEGRLEYLGI--DQREALLRYLDKLDKI----GKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELL 233 (429)
T ss_pred EEEEcCcccHHHHHHhhcc--hhHHHHHHHHhhhhhH----HHHHhhhhhhhhhhhchHHHHHhccchHHHHHhccHHhh
Confidence 9999999999999999999 6788999999998765 33444444333333333333332211 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCCc-ccc
Q 018556 296 TELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNL-WGW 352 (354)
Q Consensus 296 ~~l~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~~-~~~ 352 (354)
+.+..+++++++++.++|+.+|++ +.+|+++|||+|||||+|||++..+.+. ++|
T Consensus 234 ~~~~~e~~~~~~~v~~~L~~~g~~--~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI 289 (429)
T COG0124 234 DYLDEESLEHLEELLALLDALGIS--YEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSV 289 (429)
T ss_pred hhccHHHHHHHHHHHHHHHHcCCC--EEEccceecchhhccceEEEEEEcCCccccce
Confidence 233368999999999999999965 9999999999999999999999987763 444
No 4
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-56 Score=449.60 Aligned_cols=276 Identities=31% Similarity=0.545 Sum_probs=251.6
Q ss_pred cccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhh--hhhccccEEeecCCCCeEeeCC
Q 018556 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG--EEIRDQLYCFEDRGNRRVALRP 147 (354)
Q Consensus 70 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g--~~~~~~l~~f~D~~G~~l~LRp 147 (354)
|+..++|+|++|++|.++..+++++++++++|++|||++|.||+||++++|..++| +...+++|+|.|++|+.++|||
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRp 80 (423)
T PRK12420 1 MMEMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRY 80 (423)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccc
Confidence 45678999999999999999999999999999999999999999999999976433 4466889999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcE
Q 018556 148 ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (354)
Q Consensus 148 D~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~ 227 (354)
|+|+|+||+++++. ..+.|+|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|||.++.++++.+|+ ++
T Consensus 81 D~T~~iaR~va~~~-~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~lg~---~~ 156 (423)
T PRK12420 81 DLTIPFAKVVAMNP-NIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLNL---EV 156 (423)
T ss_pred cccHHHHHHHHhCc-CCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHCCC---CE
Confidence 99999999999874 346799999999999999999999999999999999999999999999999999999998 48
Q ss_pred EEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCC---hhhH------
Q 018556 228 GFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS---LTEL------ 298 (354)
Q Consensus 228 ~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~---l~~l------ 298 (354)
+|+|||+++++++++.+|++++.+..++.++|++++.+++++++.|.+.+++.+..+.|.+++..++ ++.+
T Consensus 157 ~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 236 (423)
T PRK12420 157 TIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIADFKEAFNN 236 (423)
T ss_pred EEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999988875443 2221
Q ss_pred --HHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCCc
Q 018556 299 --EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNL 349 (354)
Q Consensus 299 --~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~~ 349 (354)
..+++++|++++++|+.+|++.+|.|||+++|+++||||+|||+|+++.+.
T Consensus 237 ~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~ 289 (423)
T PRK12420 237 PLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSI 289 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCc
Confidence 267899999999999999998889999999999999999999999987543
No 5
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.2e-56 Score=445.04 Aligned_cols=270 Identities=26% Similarity=0.415 Sum_probs=242.9
Q ss_pred cCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEeeCCCCc
Q 018556 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELT 150 (354)
Q Consensus 72 ~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T 150 (354)
.+++|+|++|++|.+++.++++++.++++|++|||++|+||+||+++++..+.|+...++||+|.|+ +|+.++||||+|
T Consensus 2 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T 81 (391)
T PRK12292 2 MWQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMT 81 (391)
T ss_pred CCCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCc
Confidence 3578999999999999999999999999999999999999999999999877777778899999999 999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q 018556 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (354)
Q Consensus 151 ~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~ 230 (354)
+|+||+++++....+.|+|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|||.++.++++.+|++ ++.|+
T Consensus 82 ~~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~--~~~i~ 159 (391)
T PRK12292 82 AQIARIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLP--NFTLD 159 (391)
T ss_pred HHHHHHHHHhccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCC--CeEEE
Confidence 9999999987655678999999999999999999999999999999999999999999999999999999997 79999
Q ss_pred eCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCC----hhhH--------
Q 018556 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS----LTEL-------- 298 (354)
Q Consensus 231 lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~----l~~l-------- 298 (354)
|||+++++++++.++++++.+..++++++++++.. +++.+. +++.+..+.|.+++.+.+ ++.+
T Consensus 160 i~~~~i~~~il~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~--~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~ 234 (391)
T PRK12292 160 LGHVGLFRALLEAAGLSEELEEVLRRALANKDYVA---LEELVL--DLSEELRDALLALPRLRGGREVLEEARKLLPSLP 234 (391)
T ss_pred eccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHH---HHHHHh--cCCHHHHHHHHHHHHhcCCHHHHHHHHHhccChH
Confidence 99999999999999999999999999998876554 444343 677777888888876543 1111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCC
Q 018556 299 EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESN 348 (354)
Q Consensus 299 ~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~ 348 (354)
..+++++|+++++.|+.+|++..|.|||+++|+++||||+|||+|+++.+
T Consensus 235 ~~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~~~~ 284 (391)
T PRK12292 235 IKRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVDGVG 284 (391)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEECCCC
Confidence 15799999999999999999888999999999999999999999997654
No 6
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=3.1e-56 Score=463.11 Aligned_cols=276 Identities=29% Similarity=0.516 Sum_probs=249.8
Q ss_pred cccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCC
Q 018556 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPEL 149 (354)
Q Consensus 70 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~ 149 (354)
++..++|+||+|++|.++..++++++.++++|++|||++|+||+||++|+|..++|++ .++||+|.|++|+.++||||+
T Consensus 324 ~~~~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged-~k~mY~f~D~gGr~LaLRPDl 402 (763)
T PLN02972 324 RRLPKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED-SKLIYDLADQGGELCSLRYDL 402 (763)
T ss_pred hcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc-hhheEEEECCCCCEEEeCCCC
Confidence 5677999999999999999999999999999999999999999999999998777766 468999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEecc-CChhhHHHHHHHHHHHHHHhcCCCCcEE
Q 018556 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV-PAVTAEAELISSIITFFKRIGITASDVG 228 (354)
Q Consensus 150 T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~-~~~~aDaEvi~l~~e~l~~lgl~~~~~~ 228 (354)
|+|+||+++++.. .|+|+||+|+|||+++|+.||+|||+|+|+||||. ++..+|+|||.++.++|+.+|+. +++
T Consensus 403 TvPiAR~vA~n~~---~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LGi~--df~ 477 (763)
T PLN02972 403 TVPFARYVAMNGI---TSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIG--TYE 477 (763)
T ss_pred hHHHHHHHHhCCC---CcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCCCC--ceE
Confidence 9999999998753 48999999999999999999999999999999997 45568999999999999999997 799
Q ss_pred EEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHH-HHcCCCHHHHHHHHHhhcCCC-----hhhH----
Q 018556 229 FRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIKS-----LTEL---- 298 (354)
Q Consensus 229 i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L-~~~g~s~~~~~~L~~l~~~~~-----l~~l---- 298 (354)
|+|||+++++++|+.++++++.++.++.++|++++.+++++++.| +..|++++.++.|.+++.+.+ ++.+
T Consensus 478 I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~~~~ 557 (763)
T PLN02972 478 VKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKLRQEG 557 (763)
T ss_pred EEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999888776 568999999998888876542 1211
Q ss_pred --------HHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCCccc
Q 018556 299 --------EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWG 351 (354)
Q Consensus 299 --------~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~~~~ 351 (354)
..+++++|++++++|+.+|+.+.|.|||+++||++||||+|||+|.++.+.++
T Consensus 558 ~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~~gs 618 (763)
T PLN02972 558 SEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGAQVGS 618 (763)
T ss_pred HhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCCccce
Confidence 15789999999999999999888999999999999999999999998654333
No 7
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=9.1e-55 Score=431.26 Aligned_cols=270 Identities=16% Similarity=0.215 Sum_probs=240.8
Q ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEeeCCCCcH
Q 018556 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTP 151 (354)
Q Consensus 73 ~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~ 151 (354)
+++|+|++|++|.+++.++++++.++++|++|||++|.||+||++++|..+.|.+...++|+|.|+ +|+.++||||+|+
T Consensus 7 ~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 7 WLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITP 86 (392)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCH
Confidence 378999999999999999999999999999999999999999999999877777777889999999 6999999999999
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 018556 152 SLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRI 231 (354)
Q Consensus 152 ~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~l 231 (354)
|+||+++++.. .+.|+|+||+|+|||+++++.||.|||+|+|+|+||.+++.+|+|||.++.++++.||++ +++|+|
T Consensus 87 ~iaR~~a~~~~-~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~--~~~l~i 163 (392)
T PRK12421 87 QVARIDAHLLN-REGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVP--ALHLDL 163 (392)
T ss_pred HHHHHHHhhcC-CCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCC--CeEEEe
Confidence 99999887743 367999999999999998889999999999999999999999999999999999999997 799999
Q ss_pred CCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCC-hhh-------------
Q 018556 232 SSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS-LTE------------- 297 (354)
Q Consensus 232 gh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~-l~~------------- 297 (354)
||+++++++++.+|++++.++.++++++++++ .++.+.++.++++++..+.|..++.+.+ .+.
T Consensus 164 g~~~i~~~il~~l~l~~~~~~~l~~~l~kk~~---~~l~~~~~~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~~~~~~~~ 240 (392)
T PRK12421 164 GHVGIFRRLAELAGLSPEEEEELFDLLQRKAL---PELAEVCQNLGVGSDLRRMFYALARLNGGLEALDRALSVLALQDA 240 (392)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCH---HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHhhcccCCH
Confidence 99999999999999999999999888887654 4566667778888888888888876542 111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCC
Q 018556 298 LEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESN 348 (354)
Q Consensus 298 l~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~ 348 (354)
...+++++|.++++.++.++....+.||++++|+++||||+|||+|+++.+
T Consensus 241 ~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~~~~ 291 (392)
T PRK12421 241 AIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIPGRG 291 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEECCCC
Confidence 115789999999999999866556999999999999999999999997653
No 8
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=100.00 E-value=5.6e-53 Score=407.62 Aligned_cols=262 Identities=27% Similarity=0.459 Sum_probs=237.3
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHH
Q 018556 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQ 159 (354)
Q Consensus 80 ~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~ 159 (354)
+|++|.++..++++++.++++|++|||++|+||+||+.+++..+.| ...+++|+|+|++|+.++||||+|+|+||++++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~-~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~ 79 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG-ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVST 79 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC-cchhceEEEECCCCCEEeecCcCcHHHHHHHHH
Confidence 5999999999999999999999999999999999999999987655 567899999999999999999999999999998
Q ss_pred hCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHH
Q 018556 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239 (354)
Q Consensus 160 ~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~ 239 (354)
+....+.|+|+||+|+|||+++++.||+|||+|+|+|+||.++..+|+|+|.++.++++.+|++ ++.|+|||++++++
T Consensus 80 ~~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg~~--~~~i~l~~~~il~~ 157 (314)
T TIGR00443 80 RLRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKALGLK--DFKIELGHVGLVRA 157 (314)
T ss_pred hcccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHcCCC--CeEEEeCcHHHHHH
Confidence 7655678999999999999999999999999999999999999999999999999999999997 79999999999999
Q ss_pred HHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCC-----hhhHH--------HHHHHHH
Q 018556 240 VLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS-----LTELE--------GEAVADL 306 (354)
Q Consensus 240 il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~-----l~~l~--------~~al~~L 306 (354)
+++.++++++.+..|++++++++... +++.+++.+++.+.++.|..++.+.+ ++.+. .+++++|
T Consensus 158 il~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~~~~~~~~~~~l~~l 234 (314)
T TIGR00443 158 LLEEAGLPEEAREALREALARKDLVA---LEELLAELGLDPEVRERLLALPRLRGDGEEVLEEARALAGSETAEAALDEL 234 (314)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCHHH---HHHHHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999999999998877653 45566778888888888888886542 12221 5799999
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCC
Q 018556 307 KLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 307 ~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~ 347 (354)
++++++|+.+|++..|+||++++|+++||||+|||+|.++.
T Consensus 235 ~~~~~~l~~~~~~~~i~~D~~~~r~~~YYtGivFe~~~~~~ 275 (314)
T TIGR00443 235 EAVLELLEARGVEEYISLDLGLVRGYHYYTGLIFEGYAPGL 275 (314)
T ss_pred HHHHHHHHHhCCCCeEEEecccccCCCCccceEEEEEECCC
Confidence 99999999999988899999999999999999999999653
No 9
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=100.00 E-value=1.7e-52 Score=403.05 Aligned_cols=265 Identities=37% Similarity=0.594 Sum_probs=228.5
Q ss_pred CCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHH
Q 018556 78 GTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLV 157 (354)
Q Consensus 78 G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~ 157 (354)
||+|++|++++.+++++++++++|++|||++|+||+||+.+++....|.. .+++|+|.|++|+.++||||+|+|+||++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~-~~~~~~~~D~~G~~l~LR~D~T~~iaR~~ 79 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED-SDNMYRFLDRSGRVLALRPDLTVPIARYV 79 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT-GGCSEEEECTTSSEEEE-SSSHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc-hhhhEEEEecCCcEeccCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999998765555 55899999999999999999999999999
Q ss_pred HHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHH-HhcCCCCcEEEEeCCHHH
Q 018556 158 IQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFK-RIGITASDVGFRISSRKV 236 (354)
Q Consensus 158 a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~-~lgl~~~~~~i~lgh~~i 236 (354)
+++.. ...|.|+||+|+|||+++++.|++|||+|+|+|+||.++..+|+|+|.++.++++ .+|++ +++|+|||+++
T Consensus 80 a~~~~-~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~~--~~~i~i~h~~i 156 (311)
T PF13393_consen 80 ARNLN-LPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGLE--NFTIRINHTGI 156 (311)
T ss_dssp HHCCG-SSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT--SEEEEEEEHHH
T ss_pred HHhcC-cCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCC--CcEEEEcCchh
Confidence 99864 5789999999999999998999999999999999999999999999999999997 99986 89999999999
Q ss_pred HHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCC-Chh---h----H-----HHHHH
Q 018556 237 LQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK-SLT---E----L-----EGEAV 303 (354)
Q Consensus 237 l~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~-~l~---~----l-----~~~al 303 (354)
++++++.+|++++.++.++.++++++ +.++++.+.+.+++.+.++.|..++.+. +.+ . + ..+++
T Consensus 157 ~~~il~~~gl~~~~~~~l~~~l~~~~---~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~~~~~~~ 233 (311)
T PF13393_consen 157 LDAILEHLGLPEDLRRELLEALDKKD---LSELKELLSELGLSSESLEILDKLPELEGDPEALEELLESLPSSPALQEAL 233 (311)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHTH---HHHHHHHHHHTTTTHHHHHHHHHHHHHHHSHHHHHHHHHHHTCSCHHHHHH
T ss_pred hHHHHhhcCCChhhhhhhhhheeccc---cccchhhhcccccchhhhhhhhccccccchHHHHHHHHHHHhhhhhhHHHH
Confidence 99999999999999999999988764 5577788888899888888887776432 111 1 1 16799
Q ss_pred HHHHHHHHHHHHcC-CCceEEEecCCCCCCCCccceeEEEEECCCCc
Q 018556 304 ADLKLLFSLAEKFG-YSDWIQFDASVVRGLAYYTGIVFEGRKVESNL 349 (354)
Q Consensus 304 ~~L~~l~~~l~~~g-~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~~ 349 (354)
++|+++.++++.+| ....|+|||+++|+++||||+|||+|.++.+.
T Consensus 234 ~~L~~l~~~l~~~~~~~~~i~~D~~~~r~~~YYtG~vFe~~~~~~~~ 280 (311)
T PF13393_consen 234 EELEELLKLLEALGYPSIKIIFDLSLVRGLDYYTGIVFEVYAPGRGS 280 (311)
T ss_dssp HHHHHHHHHHHHCTHTTTTEEEETT-GTSSTTEESEEEEEEETTSSS
T ss_pred HHHHHHHHHHHHhcccCceEEEChhhccchhhcCCEEEEEEEcCCCc
Confidence 99999999999999 56779999999999999999999999986543
No 10
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=5.7e-49 Score=386.83 Aligned_cols=253 Identities=22% Similarity=0.330 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCCC
Q 018556 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (354)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~P 167 (354)
...++++++++++|++|||.+|.||+||+++++..++|++..++||+|.|++|+.++||||+|+|+||+++++. .+.|
T Consensus 5 ~~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~--~~~p 82 (373)
T PRK12295 5 SASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATA--GGEP 82 (373)
T ss_pred hhHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcC--CCCC
Confidence 45678999999999999999999999999999987778877889999999999999999999999999988862 4679
Q ss_pred eEEEEecceeecCCCCCCcccceEEeeeeEeccC-ChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHHCCC
Q 018556 168 LKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-AVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSI 246 (354)
Q Consensus 168 lR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~-~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~~gl 246 (354)
.|+||+|+|||++ .||+|||+|+|+|+||.. +..+|+|||.++.++++.+|++ +++|+|||+++++++++.+++
T Consensus 83 ~R~~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~--~~~i~ig~~~il~~ll~~l~l 157 (373)
T PRK12295 83 ARYAYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPG--DLEVRLGDVGLFAALVDALGL 157 (373)
T ss_pred eEEEEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCC--ceEEEeCCHHHHHHHHHHcCC
Confidence 9999999999987 689999999999999974 5789999999999999999997 799999999999999999999
Q ss_pred ChhhHhHHHHHHHHhccC--------------------------------------------------CHHHHHHHHHHc
Q 018556 247 PEHLFGKVCIIIDKIEKL--------------------------------------------------PLDVIKNDLKSA 276 (354)
Q Consensus 247 ~~~~~~~v~~~ld~~~~~--------------------------------------------------~~~~i~~~L~~~ 276 (354)
+++++.+++++++++++. .+.++.+.|.+.
T Consensus 158 ~~~~~~~l~~~i~kk~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~r~~~ei~~~l~~~ 237 (373)
T PRK12295 158 PPGWKRRLLRHFGRPRSLDALLARLAGPRVDPLDEHAGVLAALADEAAARALVEDLMSIAGISPVGGRSPAEIARRLLEK 237 (373)
T ss_pred CHHHHHHHHHHHhccchHHHHHHhhcccccccccchhhhhhhhccchhhhhhhhhhhhhccccccccccHHHHHHHHHhh
Confidence 999999999998887652 111222222211
Q ss_pred -------CCCHHHHHHHHHhhcCCC-hh----h----------HHHHHHHHHHHHHHHHHHcCCC-ceEEEecCCCCCCC
Q 018556 277 -------GMSEAAIEELLRVLSIKS-LT----E----------LEGEAVADLKLLFSLAEKFGYS-DWIQFDASVVRGLA 333 (354)
Q Consensus 277 -------g~s~~~~~~L~~l~~~~~-l~----~----------l~~~al~~L~~l~~~l~~~g~~-~~i~~Dlslvr~l~ 333 (354)
+++.+.++.+.+++++.+ .+ . ...+++++|+++++.++.+|+. +++.||++++||++
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~l~~l~~~~~~~~~~al~~L~~l~~~l~~~g~~~~~v~~D~~~vrgl~ 317 (373)
T PRK12295 238 AALAAAARLPAEALAVLERFLAISGPPDAALAALRALAADAGLDLDAALDRFEARLAALAARGIDLERLRFSASFGRPLD 317 (373)
T ss_pred hcccccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHcCCCcceEEEecccccCCc
Confidence 678888888888887653 11 1 1257899999999999999996 67999999999999
Q ss_pred CccceeEEEEECCC
Q 018556 334 YYTGIVFEGRKVES 347 (354)
Q Consensus 334 YYTGivFe~~~~~~ 347 (354)
||||+|||+|.++.
T Consensus 318 YYTGiVFe~~~~~~ 331 (373)
T PRK12295 318 YYTGFVFEIRAAGN 331 (373)
T ss_pred cccceEEEEEECCC
Confidence 99999999999765
No 11
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=6.1e-49 Score=390.63 Aligned_cols=263 Identities=35% Similarity=0.583 Sum_probs=231.0
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCCCCeEeeCCCCc
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPELT 150 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~G~~l~LRpD~T 150 (354)
++|+|++|++|.+++.++++++.++++|++|||++|.||+||++++|..+.|+. ..+++|+|.|++|+.++||||+|
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T 80 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGT 80 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCc
Confidence 479999999999999999999999999999999999999999999998765543 34789999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q 018556 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (354)
Q Consensus 151 ~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~ 230 (354)
+|+||+++++....+.|+|+||+|+|||+++++.||.|||+|+|+|+||.++..+|+|+|.++.++|+.+|++ +++|+
T Consensus 81 ~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~--~~~i~ 158 (397)
T TIGR00442 81 APVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIK--DFTLE 158 (397)
T ss_pred HHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCC--ceEEE
Confidence 9999999988655678999999999999998899999999999999999999999999999999999999997 79999
Q ss_pred eCCHHHHHHHHHHCCCChhhHhHHHHHHHH-hccCCHHHHHHHHHH-cCCCHHHHHHHHHhhcCCC--hhhHHHHHHHHH
Q 018556 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDK-IEKLPLDVIKNDLKS-AGMSEAAIEELLRVLSIKS--LTELEGEAVADL 306 (354)
Q Consensus 231 lgh~~il~~il~~~gl~~~~~~~v~~~ld~-~~~~~~~~i~~~L~~-~g~s~~~~~~L~~l~~~~~--l~~l~~~al~~L 306 (354)
|||+++++++++ .+..++.++++ +++.+.+.+...+.. .+++++..+.+..++.... ++.+..+++++|
T Consensus 159 i~~~~i~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (397)
T TIGR00442 159 INSLGILEGRLE-------YREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRAHF 231 (397)
T ss_pred ecCcccHHHHHH-------HHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHHHH
Confidence 999999999997 36778888888 677666666666654 5666666666666654321 223347899999
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCC
Q 018556 307 KLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 307 ~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~ 347 (354)
++++++|+.+|+. ++|||+++|+++||||+|||+|.++.
T Consensus 232 ~~l~~~l~~~~~~--i~~dl~~~r~~~YYtG~vFe~~~~~~ 270 (397)
T TIGR00442 232 EELKELLDALGIP--YKIDPSLVRGLDYYTGTVFEFVTDEL 270 (397)
T ss_pred HHHHHHHHHcCCC--EEECCccccCchhhcceEEEEEECCC
Confidence 9999999999995 99999999999999999999999764
No 12
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-49 Score=394.87 Aligned_cols=258 Identities=22% Similarity=0.395 Sum_probs=203.2
Q ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCCCCeEeeCCCC
Q 018556 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPEL 149 (354)
Q Consensus 73 ~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~G~~l~LRpD~ 149 (354)
.++|+||+|++|.++..++++++.++++|++|||++|.||+||++++|..++|++ ..++||+|.|++|+.++||||+
T Consensus 4 ~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~ 83 (430)
T CHL00201 4 IQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEG 83 (430)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCC
Confidence 4789999999999999999999999999999999999999999999998876755 3489999999999999999999
Q ss_pred cHHHHHHHHHhCC-CCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEE
Q 018556 150 TPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVG 228 (354)
Q Consensus 150 T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~ 228 (354)
|+|+||+++++.. ....|+|+||+|+|||+++|+.||.|||+|+|+|+||.+++.+|+|||.++.++|+.+|++ +++
T Consensus 84 T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl~--~~~ 161 (430)
T CHL00201 84 TAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVK--NLI 161 (430)
T ss_pred cHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCCC--ceE
Confidence 9999999888754 3467999999999999999999999999999999999999999999999999999999997 799
Q ss_pred EEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHh----ccCCHHHHHH----HHHHcCCC-HHHHHHHHHhhcCCChhhHH
Q 018556 229 FRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKI----EKLPLDVIKN----DLKSAGMS-EAAIEELLRVLSIKSLTELE 299 (354)
Q Consensus 229 i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~----~~~~~~~i~~----~L~~~g~s-~~~~~~L~~l~~~~~l~~l~ 299 (354)
|+|||+++++..-. ....+..++.++ +....+.+.+ .|+..+.. .+.++....+ .+.+.
T Consensus 162 i~l~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l-----~~~~~ 229 (430)
T CHL00201 162 LDINSIGKLEDRQS-------YQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKI-----SDFLS 229 (430)
T ss_pred EEECCCCchhhHHH-------HHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHH-----Hhhhh
Confidence 99999998774210 011111111111 1000011110 11111111 0111111111 12233
Q ss_pred HHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECC
Q 018556 300 GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVE 346 (354)
Q Consensus 300 ~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~ 346 (354)
.+++++|++++++|+.+|+. +.+|++++||++||||+|||+|+++
T Consensus 230 ~~~~~~l~~~~~~l~~~g~~--~~~Dl~lvRgldYYTG~vFE~~~~~ 274 (430)
T CHL00201 230 LESTEHFYDVCTYLNLLNIP--YKINYKLVRGLDYYNDTAFEIKTLS 274 (430)
T ss_pred HHHHHHHHHHHHHHHHcCCc--EEECcccccCCccccccEEEEEECC
Confidence 68899999999999999985 9999999999999999999999865
No 13
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.1e-48 Score=371.53 Aligned_cols=249 Identities=20% Similarity=0.312 Sum_probs=199.2
Q ss_pred cccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCC
Q 018556 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPEL 149 (354)
Q Consensus 70 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~ 149 (354)
+.++++|+|++|++|.++..++++++.++++|++|||++|+||+||+++++.. ...++||+|.|++|+.++||||+
T Consensus 2 ~~~~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~----~~~~~~y~~~D~~g~~l~LRpD~ 77 (281)
T PRK12293 2 ILEHEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI----ADEKELIRFSDEKNHQISLRADS 77 (281)
T ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc----cchhceEEEECCCCCEEEECCcC
Confidence 35678999999999999999999999999999999999999999999998843 24678999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEE
Q 018556 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGF 229 (354)
Q Consensus 150 T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i 229 (354)
|+|+||+++++....+.|+|+||+|+|||+++ |||+|+|+|+||.+++ +|||.++.++|+++|++ ++|
T Consensus 78 T~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~---~Evi~la~~~l~~lgl~---~~i 145 (281)
T PRK12293 78 TLDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDL---SEILNIAAEIFEELELE---PIL 145 (281)
T ss_pred CHHHHHHHHHhcccCCCceeEEEeccEEecCC------CcccccCeEeeCCCCH---HHHHHHHHHHHHHcCCC---CEE
Confidence 99999999987654578999999999999873 8999999999999876 69999999999999985 369
Q ss_pred EeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 018556 230 RISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLL 309 (354)
Q Consensus 230 ~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~l~~l~~~al~~L~~l 309 (354)
+|||+++++++++.++++.+..... .++++.+.+.+.+.+.+...+ .+.++.+.+.. ..++.++|+++
T Consensus 146 ~ig~~~i~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~--------~~~~~~~l~~l 213 (281)
T PRK12293 146 QISNIKIPKLVAEILGLDIEVFKKG--QIEKLLAQNVPWLNKLVRIKT--LEDLDEVIELV--------PDEIKEELEKL 213 (281)
T ss_pred EECCHHHHHHHHHHcCCCHHHHhHH--HHHHHHHHhHHHHHHHHhcCC--HHHHHHHHhhC--------CHHHHHHHHHH
Confidence 9999999999999999998654321 112221112233333333222 12222222211 13556677777
Q ss_pred HHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCC
Q 018556 310 FSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 310 ~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~ 347 (354)
.++++.+|+.+ ++|||+++||++||||+|||+|+++.
T Consensus 214 ~~~l~~l~~~~-~~~Dl~~vrgl~YYTGivFe~~~~~~ 250 (281)
T PRK12293 214 KELAESIKYEN-LVIAPLYYAKMRYYDDLFFRFFDGNS 250 (281)
T ss_pred HHHHHHcCCCc-EEEccccccCCCCccceEEEEEECCc
Confidence 77777777754 99999999999999999999998753
No 14
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=100.00 E-value=3e-46 Score=351.72 Aligned_cols=220 Identities=38% Similarity=0.644 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
+++.++++++.++++|++|||++|.||++|+.+++..+.++...+++|+|.|++|+.++||||+|+++||+++++....+
T Consensus 1 ~~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~ 80 (261)
T cd00773 1 EAALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLP 80 (261)
T ss_pred ChHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCC
Confidence 36789999999999999999999999999999999765555667899999999999999999999999999998865456
Q ss_pred CCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHHCC
Q 018556 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHS 245 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~~g 245 (354)
.|+|+||+|+|||+++++.|+.|||+|+|+|+||.++..+|+|+|.++.++++.+|++ +++|+|||+++++++++.++
T Consensus 81 ~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~--~~~i~l~~~~i~~~l~~~~~ 158 (261)
T cd00773 81 LPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLK--DFQIKINHRGILDGIAGLLE 158 (261)
T ss_pred CCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCC--ceEEEECCHHHHHHHhhccC
Confidence 8999999999999998889999999999999999999999999999999999999987 79999999999999999999
Q ss_pred CChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHcCCCceEEEe
Q 018556 246 IPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFD 325 (354)
Q Consensus 246 l~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~l~~l~~~al~~L~~l~~~l~~~g~~~~i~~D 325 (354)
++++....+...+++ +++++|+++++.++.+|+...|.+|
T Consensus 159 ~~~~~~~~l~~~l~~----------------------------------------~~l~~l~~l~~~l~~~~~~~~i~~d 198 (261)
T cd00773 159 DREEYIERLIDKLDK----------------------------------------EALAHLEKLLDYLEALGVDIKYSID 198 (261)
T ss_pred CCHHHHHHHHHHhhH----------------------------------------HHHHHHHHHHHHHHHcCCCceEEEc
Confidence 886554443322211 5789999999999999987789999
Q ss_pred cCCCCCCCCccceeEEEEECCC
Q 018556 326 ASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 326 lslvr~l~YYTGivFe~~~~~~ 347 (354)
++++|+++||||+|||+|+++.
T Consensus 199 ~~~~r~~~YYtG~vF~~~~~~~ 220 (261)
T cd00773 199 LSLVRGLDYYTGIVFEAVADGL 220 (261)
T ss_pred CccccCCcccCceEEEEEECCC
Confidence 9999999999999999999875
No 15
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-45 Score=357.60 Aligned_cols=268 Identities=24% Similarity=0.393 Sum_probs=232.3
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCc
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T 150 (354)
+++++|.|++|.+|.+.+..+++++.+.+.|.+|||+.|+||++|++|.+....|+....++|++.|..|+.++||||+|
T Consensus 1 ~~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T 80 (390)
T COG3705 1 MTWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFT 80 (390)
T ss_pred CCCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEeccccc
Confidence 35789999999999999999999999999999999999999999999999877677788999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q 018556 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (354)
Q Consensus 151 ~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~ 230 (354)
+||||.+++.... .|.|+||.|+|||..+...|+..||+|+|+|++|.++..+|+|||.++..+++.+|+. +++|.
T Consensus 81 ~pVaR~~~~~~~~--~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~gl~--~~~l~ 156 (390)
T COG3705 81 IPVARIHATLLAG--TPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKALGLA--DLKLE 156 (390)
T ss_pred HHHHHHHHHhcCC--CCceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHcCCc--CeEEE
Confidence 9999999998764 8999999999999985567788899999999999999999999999999999999987 89999
Q ss_pred eCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCC-ChhhH-----------
Q 018556 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK-SLTEL----------- 298 (354)
Q Consensus 231 lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~-~l~~l----------- 298 (354)
|||.+|+++++..++++...+..+.+++.+++.. ++.......+.+++..+.+..++.+. +.+.+
T Consensus 157 LG~~gif~all~~~~l~~~~~~~L~~a~~~k~~~---~~~~~~~~~~~~~~~~~~l~~l~~l~gg~e~l~~~~~~l~~~~ 233 (390)
T COG3705 157 LGHAGIFRALLAAAGLPGGWRARLRRAFGDKDLL---GLELLVLAAPLSPELRGRLSELLALLGGREVLERARGLLDELM 233 (390)
T ss_pred eccHHHHHHHHHHcCCChhHHHHHHHHHhccchh---hHHHHhhccCCChhhhHHHHHHHHHhCCHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999888876644 44444445566666666666666543 11111
Q ss_pred H-HHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCC
Q 018556 299 E-GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 299 ~-~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~ 347 (354)
. ..++++++.+.+.++.++. .+.+|++++++++||||++|++|..+.
T Consensus 234 ~~~~al~~~~~l~di~~~~~e--~i~lDLg~l~~~~YyTg~~F~ay~~~~ 281 (390)
T COG3705 234 AQGIALNEGRALADIARRLIE--KIALDLGRLRHFDYYTGLVFLAYADGL 281 (390)
T ss_pred hhhhhhhhhhhHHHHHhccch--hheehhhcccccchhhceeeeeeeccc
Confidence 1 4678888999988887443 499999999999999999999997654
No 16
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.5e-45 Score=362.11 Aligned_cols=251 Identities=33% Similarity=0.560 Sum_probs=201.7
Q ss_pred cccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhh---ccccEEeecCCCCeEeeC
Q 018556 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRGNRRVALR 146 (354)
Q Consensus 70 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~---~~~l~~f~D~~G~~l~LR 146 (354)
|+++++|+|++|++|.+++.++++++.++++|++|||++|.||++|++++|..+.|++. .++||+|.|++|+.++||
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LR 80 (412)
T PRK00037 1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLR 80 (412)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEec
Confidence 45678999999999999999999999999999999999999999999999977656653 688999999999999999
Q ss_pred CCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCc
Q 018556 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASD 226 (354)
Q Consensus 147 pD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~ 226 (354)
||+|+|+||+++++.. .|+|+||+|+|||+++++.||.|||+|+|+|+||.++..+|+|+|.++.++|+.+|++ +
T Consensus 81 pd~T~~~ar~~~~~~~---~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~lg~~--~ 155 (412)
T PRK00037 81 PEGTAPVVRAVIEHKL---QPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKALGLK--G 155 (412)
T ss_pred CCCcHHHHHHHHhCCC---CCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHcCCC--c
Confidence 9999999999998743 7999999999999999999999999999999999999899999999999999999997 5
Q ss_pred EEE----------EeCCHHHHHHHHHHCCCCh---hhHhH----HHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 018556 227 VGF----------RISSRKVLQEVLRCHSIPE---HLFGK----VCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRV 289 (354)
Q Consensus 227 ~~i----------~lgh~~il~~il~~~gl~~---~~~~~----v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l 289 (354)
+.+ .+||+++++++|+. ++++ ..... +..++++++... ...+.. ++.+.
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~-- 221 (412)
T PRK00037 156 LKLLINSLGDFEIRANYRKALVGFLEK-GLDELDEDSKRRLETNPLRILDKKDKED----QELLKD-------APKLL-- 221 (412)
T ss_pred eeeeeccCCCHHHhHHHHHHHHHHHHh-CchhhchHHHHHHhhCchhhhcccchhh----HHHHhc-------chHHH--
Confidence 666 45566778888876 5443 11001 111122111100 000000 01111
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCC
Q 018556 290 LSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 290 ~~~~~l~~l~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~ 347 (354)
+.+...++++|+++.++++.+|+. +.|||+++|+++||||+|||+|+++.
T Consensus 222 ------~~~~~~~~~~l~~l~~~l~~~~~~--i~~Dl~~~r~l~YYtG~vFe~~~~~~ 271 (412)
T PRK00037 222 ------DYLDEESKEHFEELKELLDALGIP--YVIDPRLVRGLDYYTGTVFEFVTDDL 271 (412)
T ss_pred ------HHhhHHHHHHHHHHHHHHHHcCCC--EEECCCcccChhhccceEEEEEECCC
Confidence 112356888999999999999985 99999999999999999999999753
No 17
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=5.7e-40 Score=309.72 Aligned_cols=237 Identities=16% Similarity=0.154 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee-cCCCCeEeeCCCCcHHHHHHHHHhCCC
Q 018556 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKS 163 (354)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~-D~~G~~l~LRpD~T~~iaR~~a~~~~~ 163 (354)
+..-.++.+++.++++|++|||++|+||+||++|++.. .++.....+++++ |.+|+.++||||+|+|+||+++++.
T Consensus 5 ~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~-~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~-- 81 (272)
T PRK12294 5 EQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQL-NHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP-- 81 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhc-cccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC--
Confidence 45667889999999999999999999999999999743 3444455555544 6699999999999999999998753
Q ss_pred CCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHH
Q 018556 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRC 243 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~ 243 (354)
..|.|+||+|+|||+++ +++|+|+|+||.+ ..+|+|++.++.+++..+|..+.++ |+|||+++++++++.
T Consensus 82 -~~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~-~~a~~e~l~la~~~l~~~g~~~~~~-i~lGh~~~~~~l~~~ 151 (272)
T PRK12294 82 -TAATKVAYAGLIIRNNE-------AAVQVGIENYAPS-LANVQQSFKLFIQFIQQQLRDNVHF-VVLGHYQLLDALLDK 151 (272)
T ss_pred -CCCceEEEeccEeccCC-------CcceeceEEECCC-chhHHHHHHHHHHHHHHhCCCCCcE-EEeccHHHHHHHHhC
Confidence 24679999999999874 3899999999944 7899999999999999998762234 799999999999984
Q ss_pred CCCChhhHhHHHHHHHHhccCCHHHHHHHHHHc-CC-------CHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH
Q 018556 244 HSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSA-GM-------SEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEK 315 (354)
Q Consensus 244 ~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~-g~-------s~~~~~~L~~l~~~~~l~~l~~~al~~L~~l~~~l~~ 315 (354)
.+++.++++++.++| ..++++.+... ++ ..+.++++.++.. -..+++++|+.+.+.++.
T Consensus 152 ----~~~~~~l~~~l~~Kn---~~~l~~~l~~~~~l~~~l~~~~~~~l~~a~~l~~------~~~~~~~~L~~l~~~l~~ 218 (272)
T PRK12294 152 ----SLQTPDILSMIEERN---LSGLVTYLSTEHPIVQILKENTQQQLNVLEHYIP------NDHPALVELKIWERWLHT 218 (272)
T ss_pred ----HHHHHHHHHHHHhcC---HHHHHHHHhhhhhHHHHHHhchHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHh
Confidence 456677777777654 44555555321 00 1111222222210 015789999999999999
Q ss_pred cCCCceEEEecCCCCCCCCccceeEEEEECCCC
Q 018556 316 FGYSDWIQFDASVVRGLAYYTGIVFEGRKVESN 348 (354)
Q Consensus 316 ~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~ 348 (354)
.|.. .|+||++++|+++||||+||++|.++.+
T Consensus 219 ~~~~-~i~~Dl~~~r~~~YYTG~vF~~y~~~~~ 250 (272)
T PRK12294 219 QGYK-DIHLDITAQPPRSYYTGLFIQCHFAENE 250 (272)
T ss_pred cCCC-eEEEcccccCCCCCcCCeEEEEEECCCC
Confidence 9876 4999999999999999999999997643
No 18
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=2.3e-31 Score=279.46 Aligned_cols=239 Identities=21% Similarity=0.276 Sum_probs=180.9
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhh--hhccccEEeecCCCCeEeeCCCCcH
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~--~~~~~l~~f~D~~G~~l~LRpD~T~ 151 (354)
+.++|++||+|.++.++++|++.++++|+++||++|.||+||+.++|.. +|+ ...++||+|.|++|+.++|||+.|+
T Consensus 257 ~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~-~g~~~~~~~~my~~~d~~~~~~~LRP~~~~ 335 (638)
T PRK00413 257 EEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWET-SGHWDHYRENMFPTTESDGEEYALKPMNCP 335 (638)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHh-cCChhhhhhccceeecCCCcEEEEecCCcH
Confidence 5679999999999999999999999999999999999999999999987 464 3578999999999999999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEecceeecCCCC--CC--cccceEEeeeeEeccCChh-hH-HHHHHHHHHHHHHhcCCC
Q 018556 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVT-AE-AELISSIITFFKRIGITA 224 (354)
Q Consensus 152 ~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~~~--~G--r~rEf~Q~g~Ei~g~~~~~-aD-aEvi~l~~e~l~~lgl~~ 224 (354)
+++|+++++... .++|+|+||+|+|||+|+++ .| |.|||+|+|+|+||.++.. +| +|+|.++.++++.||++
T Consensus 336 ~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~- 414 (638)
T PRK00413 336 GHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFE- 414 (638)
T ss_pred HHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc-
Confidence 999999987654 47899999999999999886 35 9999999999999987765 46 99999999999999997
Q ss_pred CcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCChhhHHHHHHH
Q 018556 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVA 304 (354)
Q Consensus 225 ~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~l~~l~~~al~ 304 (354)
++++++||+ . . ..+|.++ .+.. . .+.+++.|...|++.+..+....+ ....++....+++.
T Consensus 415 -~~~i~l~~r-~-~---~~~g~~~-~~~~-------~----~~~l~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~ 475 (638)
T PRK00413 415 -DYEVKLSTR-P-E---KRIGSDE-MWDK-------A----EAALKEALDELGLDYEIAPGEGAF-YGPKIDFQLKDALG 475 (638)
T ss_pred -eEEEEEecC-C-c---ccCCCHH-HHHH-------H----HHHHHHHHHHcCCCceecCCcccc-ccceEEEEeecCCC
Confidence 799999998 2 2 2455543 1111 1 234555566555543321111110 00001100011122
Q ss_pred HHHHHHHHHHHcCCCceEEEecCCCCCCC-CccceeEEEE
Q 018556 305 DLKLLFSLAEKFGYSDWIQFDASVVRGLA-YYTGIVFEGR 343 (354)
Q Consensus 305 ~L~~l~~~l~~~g~~~~i~~Dlslvr~l~-YYTGivFe~~ 343 (354)
++.++ ..+.+|+++.++++ ||||.+++..
T Consensus 476 ~~~~l----------~~~~~d~~~~~~~dl~Yt~~~~~~~ 505 (638)
T PRK00413 476 REWQC----------GTIQLDFNLPERFDLTYVGEDGEKH 505 (638)
T ss_pred CeEEe----------ccEeecccChhhcCCEEECCCCCcc
Confidence 22111 34789999999999 8999987654
No 19
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.94 E-value=5.8e-26 Score=235.41 Aligned_cols=204 Identities=23% Similarity=0.301 Sum_probs=166.0
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHH
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
++|+.||+|.++++++.|++.+++++.++||++|.||+|++.++|.. +|+. ..++||+|.|++|+.++|||+.|+++
T Consensus 189 ~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i 267 (563)
T TIGR00418 189 GPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEI-SGHWDNYKERMFPFTELDNREFMLKPMNCPGH 267 (563)
T ss_pred CCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHh-cCCcccchhhcceeccCCCceEEEecCCCHHH
Confidence 79999999999999999999999999999999999999999999987 3643 57899999999999999999999999
Q ss_pred HHHHHHhCCC-CCCCeEEEEecceeecCCCC--C--CcccceEEeeeeEeccCChhhHHH---HHHHHHHHHHHhcCCCC
Q 018556 154 ARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--R--GRRREHYQWNMDIIGVPAVTAEAE---LISSIITFFKRIGITAS 225 (354)
Q Consensus 154 aR~~a~~~~~-~~~PlR~~y~g~VfR~e~~~--~--Gr~rEf~Q~g~Ei~g~~~~~aDaE---vi~l~~e~l~~lgl~~~ 225 (354)
+|+++.+... .++|+|+||+|+|||+|..+ . +|.|||+|.|+|+||. ...+++| ++.++.++++.||++
T Consensus 268 ~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i~~~~~~~~~lgl~-- 344 (563)
T TIGR00418 268 FLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQFRLIQKVYSDFGFS-- 344 (563)
T ss_pred HHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHHHHHHHHHHHcCCC--
Confidence 9999987653 46899999999999999432 2 3999999999999998 4556666 999999999999997
Q ss_pred cEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCChhhHHHHHHHH
Q 018556 226 DVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVAD 305 (354)
Q Consensus 226 ~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~l~~l~~~al~~ 305 (354)
++.+++|. +.++ +.+ +- +. .....
T Consensus 345 ~~~~~l~~-----------~~~~----------~~~---------------~~-~~-------------------~~~~~ 368 (563)
T TIGR00418 345 FDKYELST-----------RDPE----------DFI---------------GE-DE-------------------LWEKA 368 (563)
T ss_pred eEEEEEeC-----------CChh----------hhc---------------CC-HH-------------------HHHHH
Confidence 57788884 1110 000 00 00 00123
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEE
Q 018556 306 LKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGR 343 (354)
Q Consensus 306 L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~ 343 (354)
...+.+.|+..|+. ..+|.+ ||++||+.++|++.
T Consensus 369 ~~~~~~~l~~~~i~--~~~~~~--~g~~y~~~~~f~~~ 402 (563)
T TIGR00418 369 EAALEEALKELGVP--YEIDPG--RGAFYGPKIDFAFK 402 (563)
T ss_pred HHHHHHHHHhCCCc--eEEcCC--CcceecceEEEEee
Confidence 34555666778886 788888 99999999999963
No 20
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.94 E-value=9.1e-27 Score=241.96 Aligned_cols=160 Identities=19% Similarity=0.295 Sum_probs=145.5
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhh--hhccccEEeecCCCCeEeeCCCCcH
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~--~~~~~l~~f~D~~G~~l~LRpD~T~ 151 (354)
..++|++||+|.++++++.|++.++++++++||++|.||++++.++|.. +|+ ...++||+|.|.+|+.++|||+.|+
T Consensus 193 ~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~-sg~~~~~~~~my~~~d~~~~~~~LRP~~~~ 271 (575)
T PRK12305 193 EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKT-SGHLDNYKENMFPPMEIDEEEYYLKPMNCP 271 (575)
T ss_pred ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCCcccchhhcccccccCCceEEEecCCCH
Confidence 3589999999999999999999999999999999999999999999987 576 3578999999999999999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEecceeecCCCC----CCcccceEEeeeeEeccCChhhH--HHHHHHHHHHHHHhcCCC
Q 018556 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT----RGRRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGITA 224 (354)
Q Consensus 152 ~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~~~----~Gr~rEf~Q~g~Ei~g~~~~~aD--aEvi~l~~e~l~~lgl~~ 224 (354)
+++|+++++... .++|+|+||+|+|||+|+++ .+|.|||+|+|+|+||.++..+| +|++.++.++++.||++
T Consensus 272 ~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~- 350 (575)
T PRK12305 272 GHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFK- 350 (575)
T ss_pred HHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 999999987643 47899999999999999774 34999999999999999877777 99999999999999997
Q ss_pred CcEEEEeCCHHH
Q 018556 225 SDVGFRISSRKV 236 (354)
Q Consensus 225 ~~~~i~lgh~~i 236 (354)
++++.+|++.+
T Consensus 351 -~~~i~l~~r~~ 361 (575)
T PRK12305 351 -DYYLELSTREP 361 (575)
T ss_pred -eEEEEEeCCCh
Confidence 78999999765
No 21
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.93 E-value=1.4e-25 Score=232.50 Aligned_cols=189 Identities=19% Similarity=0.199 Sum_probs=160.5
Q ss_pred ccCCCCCCcccCCCCCCCccccc-----ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhh
Q 018556 48 NQNGGRSGARSLSPSPVSDDLQK-----IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122 (354)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~ 122 (354)
|..+.||-+-.++.++ ..+++. +..+.++|++||+|.+++++++|++.+++.|+++||++|.||.+++.++|..
T Consensus 4 s~~~~~t~~~~p~~~~-~~s~~ll~~ag~i~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~ 82 (565)
T PRK09194 4 SQLFLPTLKETPADAE-VISHQLLLRAGYIRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQE 82 (565)
T ss_pred hhhhhhhhccCccccc-hhhHHHHHhCCCccccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhh
Confidence 3456777766666554 355555 4567899999999999999999999999999999999999999999999975
Q ss_pred hhhhh--hccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCC-CCCCeEEEEecceeecC-CCCCC--cccceEEeeee
Q 018556 123 KAGEE--IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMD 196 (354)
Q Consensus 123 ~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~E 196 (354)
+|+. ..++||+|.|++|+.++|||+.+..++.+++..... .++|+|+||+|+|||+| +|+.| |.|||+|.|++
T Consensus 83 -sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~ 161 (565)
T PRK09194 83 -SGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAY 161 (565)
T ss_pred -cCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEE
Confidence 4643 467899999999999999998887777777665432 47899999999999999 99999 99999999999
Q ss_pred EeccCChhhHH---HHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHH
Q 018556 197 IIGVPAVTAEA---ELISSIITFFKRIGITASDVGFRISSRKVLQEVL 241 (354)
Q Consensus 197 i~g~~~~~aDa---Evi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il 241 (354)
+||.+...+|+ +++.++.++|++||++ +.+.++|++.+.+..
T Consensus 162 ~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~---~~~~~~~~g~~gg~~ 206 (565)
T PRK09194 162 SFHADEESLDETYDAMYQAYSRIFDRLGLD---FRAVEADSGAIGGSA 206 (565)
T ss_pred EEcCChHHHHHHHHHHHHHHHHHHHHhCCc---cEEEEcccccCCCce
Confidence 99998888887 6677789999999995 888999988887654
No 22
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.93 E-value=1.5e-25 Score=210.61 Aligned_cols=167 Identities=20% Similarity=0.294 Sum_probs=143.2
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhh--hhccccEEeecCCCCeEeeCCC
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPE 148 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~--~~~~~l~~f~D~~G~~l~LRpD 148 (354)
+..+.++|++|++|.+++++++|++.++++++++||++|.||.+++.++|..+ |+ ...++||++.|++|+.++|||+
T Consensus 15 ~~~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~s-g~~~~~~~emy~~~d~~~~~l~LrPt 93 (255)
T cd00779 15 FIRQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKES-GRWDAYGPELLRLKDRHGKEFLLGPT 93 (255)
T ss_pred CcccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhc-CCccccCcccEEEecCCCCeEEEecC
Confidence 33568999999999999999999999999999999999999999999999764 65 3578999999999999999999
Q ss_pred CcHHHHHHHHHhCC-CCCCCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCChhhHH---HHHHHHHHHHHHhc
Q 018556 149 LTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFFKRIG 221 (354)
Q Consensus 149 ~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~~~aDa---Evi~l~~e~l~~lg 221 (354)
.+.++..++++... ..++|+|+||+|+|||+| +++.| |.|||+|.|+++||.+...+|+ |++.++.++|+.||
T Consensus 94 ~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lg 173 (255)
T cd00779 94 HEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLG 173 (255)
T ss_pred CcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66555544443322 247899999999999999 99999 9999999999999998778887 78888999999999
Q ss_pred CCCCcEEEEeCCHHHHHHHH
Q 018556 222 ITASDVGFRISSRKVLQEVL 241 (354)
Q Consensus 222 l~~~~~~i~lgh~~il~~il 241 (354)
++ +.+..++.+.+.+..
T Consensus 174 l~---~~~~~~~~~~~gg~~ 190 (255)
T cd00779 174 LP---FVKVEADSGAIGGSL 190 (255)
T ss_pred Cc---EEEEEecCCCCCCcc
Confidence 95 677777877776643
No 23
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.92 E-value=7e-25 Score=226.45 Aligned_cols=184 Identities=18% Similarity=0.178 Sum_probs=157.7
Q ss_pred ccCCCCCCcccCCCCCCCccccc-----ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhh
Q 018556 48 NQNGGRSGARSLSPSPVSDDLQK-----IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122 (354)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~ 122 (354)
|..+.||-+..++.++ ..+|+. +..+.++|+++|+|.+++++++|++.+++.|.++||++|.+|.|++.++|..
T Consensus 4 s~~~~~tl~~~p~~~~-~~s~~ll~rag~i~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~ 82 (568)
T TIGR00409 4 SQYLFPTLKETPADAE-VKSHQLLLRAGFIRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQE 82 (568)
T ss_pred hhhhhhhccCCCcccc-hhhHHHHHhCCCccccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhh
Confidence 4567888888877765 366666 4568899999999999999999999999999999999999999999999976
Q ss_pred hhhhh--hccccEEeecCCCCeEeeCCC----CcHHHHHHHHHhCCCCCCCeEEEEecceeecC-CCCCC--cccceEEe
Q 018556 123 KAGEE--IRDQLYCFEDRGNRRVALRPE----LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQW 193 (354)
Q Consensus 123 ~~g~~--~~~~l~~f~D~~G~~l~LRpD----~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~ 193 (354)
+|+. ..++||+|.|+.|+.++|||+ +|..++|.+.++ .++|+|+||+++|||+| +|+.| |.|||+|.
T Consensus 83 -sg~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~sy---r~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~ 158 (568)
T TIGR00409 83 -SGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSY---KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMK 158 (568)
T ss_pred -cCCCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhc---cccCeEEEEeeCEeeCCCCCCCCccccccEEEE
Confidence 4553 468999999999999999997 887777777765 36899999999999999 99999 99999999
Q ss_pred eeeEeccCChhhHHHHH---HHHHHHHHHhcCCCCcEEEEeCCHHHHHH
Q 018556 194 NMDIIGVPAVTAEAELI---SSIITFFKRIGITASDVGFRISSRKVLQE 239 (354)
Q Consensus 194 g~Ei~g~~~~~aDaEvi---~l~~e~l~~lgl~~~~~~i~lgh~~il~~ 239 (354)
++++||.+...+|+|+. .++.++|++|||+ +.+..++++.+.+
T Consensus 159 d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~---~~~v~~~~g~~gg 204 (568)
T TIGR00409 159 DAYSFHSDEESLDATYQKMYQAYSNIFSRLGLD---FRPVQADSGAIGG 204 (568)
T ss_pred EEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCc---ceEEEeccccCCC
Confidence 99999998888888776 4569999999995 6666676665544
No 24
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.92 E-value=5.1e-25 Score=225.77 Aligned_cols=226 Identities=19% Similarity=0.264 Sum_probs=174.8
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcH
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~ 151 (354)
..++|+++|+|.++.+++.|++.++++++++||++|.||.++..++|.. +|++ ..++||.+ |.+|+.++|||+.|+
T Consensus 155 ~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~-SGh~~~y~~~mf~~-~~~~e~~~LrPm~cp 232 (545)
T PRK14799 155 EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKI-SGHYTLYRDKLIVF-NMEGDEYGVKPMNCP 232 (545)
T ss_pred ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhh-ccccccchhhccee-eccCceEEeccCCCH
Confidence 4689999999999999999999999999999999999999999999986 7887 68899988 888999999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEecceeecCCCCC----CcccceEEeeeeEeccCChh-hHH-HHHHHHHHHHHHhcCCC
Q 018556 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTR----GRRREHYQWNMDIIGVPAVT-AEA-ELISSIITFFKRIGITA 224 (354)
Q Consensus 152 ~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~~~~----Gr~rEf~Q~g~Ei~g~~~~~-aDa-Evi~l~~e~l~~lgl~~ 224 (354)
+++++++++..+ +++|+|+|++|+|||+|.++. +|.|||+|.|+||||.++.. +|+ |++.++.++++.+|++.
T Consensus 233 ~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~ 312 (545)
T PRK14799 233 AHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKD 312 (545)
T ss_pred HHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999987654 489999999999999998875 69999999999999997764 776 99999999999999964
Q ss_pred CcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCChhhHHHHHHH
Q 018556 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVA 304 (354)
Q Consensus 225 ~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~l~~l~~~al~ 304 (354)
.++.+.++++. .+.+|.++. . ++. . +.+++.|.+.|++-+..+....+.. ..++....+++.
T Consensus 313 ~~~~i~ls~Rp-----e~~~G~~~~-w-------dka---~-~~l~~~L~~~gl~~~~~~g~gafyg-pkiD~~v~dalg 374 (545)
T PRK14799 313 DDIKPYLSTRP-----DESIGSDEL-W-------EKA---T-NALISALQESGLKFGIKEKEGAFYG-PKIDFEIRDSLG 374 (545)
T ss_pred ccEEEEEEcCh-----hhhcCCHHH-H-------HHH---H-HHHHHHHHHcCCCeEEecceecccc-CccceEehhhcC
Confidence 46999999986 345554431 1 111 1 2345566666665443332222211 112221256666
Q ss_pred HHHHHHHHHHHcCCC
Q 018556 305 DLKLLFSLAEKFGYS 319 (354)
Q Consensus 305 ~L~~l~~~l~~~g~~ 319 (354)
+..++.+..-.++++
T Consensus 375 r~~q~~Tiqldf~lp 389 (545)
T PRK14799 375 RWWQLSTIQVDFNLP 389 (545)
T ss_pred chhhhhhhhhhcCcc
Confidence 766666655444443
No 25
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=8.2e-24 Score=225.03 Aligned_cols=257 Identities=17% Similarity=0.222 Sum_probs=197.2
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHH
Q 018556 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQ 159 (354)
Q Consensus 80 ~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~ 159 (354)
.++.+.....++.+.+.+.++|++||+.+++||.+....- ......+.+.++|++|.+++|+.|++.|+||++++
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~-----~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~ 999 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNA-----CAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSR 999 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccccc-----cchhccceeeeecCCCCEEEeeccccchHHHHhhh
Confidence 3456677889999999999999999999999995544321 11125678999999999999999999999999998
Q ss_pred hCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHH
Q 018556 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239 (354)
Q Consensus 160 ~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~ 239 (354)
+.. .-+|+|.+++|||... .. +|+|++||+|||||......|||+|.++.|++.. -+...++.|.+||+.++++
T Consensus 1000 N~~---~~~Kry~i~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~-~l~~~n~~i~lnH~~LL~A 1073 (1351)
T KOG1035|consen 1000 NSV---LSFKRYCISRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTE-ILHEGNCDIHLNHADLLEA 1073 (1351)
T ss_pred chH---HHHHHhhhheeecccc-cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHH-HhccCceeEEeChHHHHHH
Confidence 854 5899999999999876 44 9999999999999998779999999999999987 3444589999999999999
Q ss_pred HHHHCCCChhhHhHHHHHHHHhcc--CCHHHHHHHHHHcCCCHHHHHHHHHhhcC------C------------ChhhHH
Q 018556 240 VLRCHSIPEHLFGKVCIIIDKIEK--LPLDVIKNDLKSAGMSEAAIEELLRVLSI------K------------SLTELE 299 (354)
Q Consensus 240 il~~~gl~~~~~~~v~~~ld~~~~--~~~~~i~~~L~~~g~s~~~~~~L~~l~~~------~------------~l~~l~ 299 (354)
++..||+|++++.+|..++..... ....+.+........+.....+|...+.. + ..+.+.
T Consensus 1074 i~~~~~i~~~~r~~v~~~l~~~~~~r~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v 1153 (1351)
T KOG1035|consen 1074 ILSHCGIPKDQRRKVAELLSDMGSSRPQRSEKELKWVFIRRSSLQLAKLPEFVLNRLFLVAGRFQALKLIRGKLRADSLV 1153 (1351)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhhccccHHHHHHHHhhhhHHHHHhhhhHHHHHhhhhhhhcchhhhHHHhhhhhhhHHH
Confidence 999999999999999988865432 12111111111111111112222111100 0 122232
Q ss_pred HHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCC
Q 018556 300 GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESN 348 (354)
Q Consensus 300 ~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~ 348 (354)
. ++++|+.+..++..+|++..+.|+.++.+....-.|++|++.+....
T Consensus 1154 r-~L~eLe~~~~~~~~~~i~~~~~i~~g~~~~~~~~~g~~~qi~a~~~~ 1201 (1351)
T KOG1035|consen 1154 R-ALKELENVVGLLRSLGIEEHVHIYVGPTESRHRNGGIQFQITAEIKS 1201 (1351)
T ss_pred H-HHHHHHHHHHHHHHhccccceEEeeccceeEEcCCcEEEEEeecccC
Confidence 5 99999999999999999999999999887777778999999876543
No 26
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.92 E-value=2.7e-24 Score=206.39 Aligned_cols=158 Identities=23% Similarity=0.383 Sum_probs=138.6
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcH
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~ 151 (354)
..++|++|++|.++++++.|++.++++++++||++|.||++++.++|.. +|+. ..++||++ +.+|+.++|||+.|+
T Consensus 17 ~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~l~LRP~~~~ 94 (298)
T cd00771 17 EAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPF-EEEDEEYGLKPMNCP 94 (298)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEe-ccCCceEEEcccCCH
Confidence 4789999999999999999999999999999999999999999999986 4653 47889999 457789999999999
Q ss_pred HHHHHHHHhCC-CCCCCeEEEEecceeecCCCC--C--CcccceEEeeeeEeccCCh-hhH-HHHHHHHHHHHHHhcCCC
Q 018556 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--R--GRRREHYQWNMDIIGVPAV-TAE-AELISSIITFFKRIGITA 224 (354)
Q Consensus 152 ~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~~--~--Gr~rEf~Q~g~Ei~g~~~~-~aD-aEvi~l~~e~l~~lgl~~ 224 (354)
+++|+++.... ..++|+|+||+|+|||+|.++ . +|.|||+|.|+|+||.++. .+| .|++.++.++++.||+.
T Consensus 95 ~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~- 173 (298)
T cd00771 95 GHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFF- 173 (298)
T ss_pred HHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCC-
Confidence 99999998653 358999999999999999664 2 5899999999999987643 234 37999999999999997
Q ss_pred CcEEEEeCCHH
Q 018556 225 SDVGFRISSRK 235 (354)
Q Consensus 225 ~~~~i~lgh~~ 235 (354)
++.+.++++.
T Consensus 174 -~~~i~l~~~~ 183 (298)
T cd00771 174 -DYKVELSTRP 183 (298)
T ss_pred -cEEEEEEcCh
Confidence 6889999987
No 27
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=3.2e-24 Score=225.36 Aligned_cols=155 Identities=26% Similarity=0.422 Sum_probs=137.7
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhh--hhccccEEeecCCCCeEeeCCCCcH
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~--~~~~~l~~f~D~~G~~l~LRpD~T~ 151 (354)
+..+|++||+|.+..+++.|++.+++.+.++||++|.||.+++.++|.. +|+ ...++|| +.|.+|+.++|||+.|+
T Consensus 261 ~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sG~~~~~~~emy-~~d~~~~~~~LrP~~~~ 338 (639)
T PRK12444 261 EEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWER-SGHWDHYKDNMY-FSEVDNKSFALKPMNCP 338 (639)
T ss_pred cccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCChhhhhhhcC-eecCCCcEEEEccCCCH
Confidence 4688999999999999999999999999999999999999999999986 475 3678999 88999999999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEecceeecCCCCC--C--cccceEEeeeeEeccCChhhHHH---HHHHHHHHHHHhcCC
Q 018556 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTR--G--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFFKRIGIT 223 (354)
Q Consensus 152 ~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~~~~--G--r~rEf~Q~g~Ei~g~~~~~aDaE---vi~l~~e~l~~lgl~ 223 (354)
+++|+++....+ .++|+|+||+|+|||+|+++. | |.|||+|.|+++||.++. +++| ++.++.++++.||++
T Consensus 339 ~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~-~~~e~~~~~~~~~~i~~~lgl~ 417 (639)
T PRK12444 339 GHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQ-IEDEIKSVMAQIDYVYKTFGFE 417 (639)
T ss_pred HHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHH-HHHHHHHHHHHHHHHHHHcCCc
Confidence 999999765544 578999999999999998754 6 999999999999988654 5555 899999999999994
Q ss_pred CCcEEEEeCCH
Q 018556 224 ASDVGFRISSR 234 (354)
Q Consensus 224 ~~~~~i~lgh~ 234 (354)
+.+.++++
T Consensus 418 ---~~~~~~~r 425 (639)
T PRK12444 418 ---YEVELSTR 425 (639)
T ss_pred ---EEEEEECC
Confidence 77888874
No 28
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.92 E-value=1.8e-24 Score=199.61 Aligned_cols=150 Identities=24% Similarity=0.404 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhh-hhhhccccEEeecCC----CCeEeeCCCCcHHHHHHHHHh
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKA-GEEIRDQLYCFEDRG----NRRVALRPELTPSLARLVIQK 160 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~-g~~~~~~l~~f~D~~----G~~l~LRpD~T~~iaR~~a~~ 160 (354)
+++++++|++.+++.|.++||++|.||.+++.++|.... ++...++||++.|.+ |+.++||||.|++++|+++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 367899999999999999999999999999999997632 244678999999988 899999999999999999987
Q ss_pred CCC-CCCCeEEEEecceeecCCCC---CCcccceEEeeeeEeccC--ChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCH
Q 018556 161 GKS-VSLPLKWFAVGQCWRYERMT---RGRRREHYQWNMDIIGVP--AVTAEAELISSIITFFKRIGITASDVGFRISSR 234 (354)
Q Consensus 161 ~~~-~~~PlR~~y~g~VfR~e~~~---~Gr~rEf~Q~g~Ei~g~~--~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~ 234 (354)
... .++|+|+||+|+|||+|.++ .+|.|||+|.|+|+||.+ +..++.|++.++.++++.||++ +.+.+++.
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~---~~i~~~~~ 157 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLP---VRVVVADD 157 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc---EEEEEccC
Confidence 654 57899999999999999665 569999999999999998 6678999999999999999984 88999998
Q ss_pred HHHH
Q 018556 235 KVLQ 238 (354)
Q Consensus 235 ~il~ 238 (354)
+.+.
T Consensus 158 ~~~~ 161 (235)
T cd00670 158 PFFG 161 (235)
T ss_pred hhhc
Confidence 7543
No 29
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.90 E-value=9.7e-23 Score=192.39 Aligned_cols=160 Identities=22% Similarity=0.299 Sum_probs=137.9
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCCC----CeE
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGN----RRV 143 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~G----~~l 143 (354)
++..+++|+++|+|.+++++++|++.+++.++++||++|.+|.+++.++|. ++|+. ..+++|.+.|.+| +.+
T Consensus 16 ~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~~~l 94 (264)
T cd00772 16 ADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKELAVFKDAGDEELEEDF 94 (264)
T ss_pred ccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccceEEEeCCCCccCceE
Confidence 444569999999999999999999999999999999999999999999995 45765 2378999999887 899
Q ss_pred eeCCCCcHHHHHHHHHhCCC-CCCCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCChhhHHHHHHH---HHHH
Q 018556 144 ALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAELISS---IITF 216 (354)
Q Consensus 144 ~LRpD~T~~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~~~aDaEvi~l---~~e~ 216 (354)
+|||+.|++++++++..... .++|+|+|++|+|||+| ++..| |.|||+|.++++++.+...+++|+..+ +.++
T Consensus 95 ~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i 174 (264)
T cd00772 95 ALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEI 174 (264)
T ss_pred EECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887543 57999999999999999 87788 999999999999988777777776554 5999
Q ss_pred HHHhc-CCCCcEEEEeCCH
Q 018556 217 FKRIG-ITASDVGFRISSR 234 (354)
Q Consensus 217 l~~lg-l~~~~~~i~lgh~ 234 (354)
++.|| ++ +.+.....
T Consensus 175 ~~~l~~lp---~~~~~~~~ 190 (264)
T cd00772 175 ARDLAAID---FIEGEADE 190 (264)
T ss_pred HHhcCCcc---EEEEEcCC
Confidence 99999 65 55555443
No 30
>PLN02908 threonyl-tRNA synthetase
Probab=99.88 E-value=9e-23 Score=215.56 Aligned_cols=183 Identities=19% Similarity=0.266 Sum_probs=157.7
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcH
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~ 151 (354)
+.++|+++|+|.++++++.|.+.+++.++++||++|.||.+.+.++|.. +|++ ..++||.| |.+++.++|||+.|+
T Consensus 308 ~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sGh~~~~~~~mf~~-~~~~~~~~Lrp~~~~ 385 (686)
T PLN02908 308 ELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWET-SGHAAHYKENMFVF-EIEKQEFGLKPMNCP 385 (686)
T ss_pred CCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh-cCCccccchhccEE-ecCCeeEEEcCCCcH
Confidence 5678999999999999999999999999999999999999999999985 7876 67899998 678899999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEecceeecCCC----CCCcccceEEeeeeEecc-CChhhHH-HHHHHHHHHHHHhcCCC
Q 018556 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERM----TRGRRREHYQWNMDIIGV-PAVTAEA-ELISSIITFFKRIGITA 224 (354)
Q Consensus 152 ~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~~----~~Gr~rEf~Q~g~Ei~g~-~~~~aDa-Evi~l~~e~l~~lgl~~ 224 (354)
+++++++.+... +++|+|+|++|+|||+|.+ +.+|.|||+|.++++|+. +...+|+ |++.++.++++.||++
T Consensus 386 ~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~- 464 (686)
T PLN02908 386 GHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFT- 464 (686)
T ss_pred HHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCc-
Confidence 999999987654 4899999999999999966 455999999999999999 4556777 8999999999999994
Q ss_pred CcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhcc
Q 018556 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEK 263 (354)
Q Consensus 225 ~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~ 263 (354)
+.+.+|++. +..+..+++.+.....+..+|++.++
T Consensus 465 --~~~~ls~r~--~~~~g~~~~w~~ae~~l~~~ld~~~~ 499 (686)
T PLN02908 465 --YELKLSTRP--EKYLGDLETWDKAEAALTEALNAFGK 499 (686)
T ss_pred --EEEEEeCCc--cccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 889999986 55555555544445567777777643
No 31
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.87 E-value=7.4e-22 Score=198.86 Aligned_cols=172 Identities=16% Similarity=0.231 Sum_probs=147.8
Q ss_pred ccCCCCCCcccCCCCCCCccccc-----ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhh
Q 018556 48 NQNGGRSGARSLSPSPVSDDLQK-----IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122 (354)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~ 122 (354)
|+.++||-+..+++++. .+|++ +..+.++|+.+|+|.+++++++|++.+++.+.++||++|.||.+++.++|..
T Consensus 4 s~~~~~~l~~~~~~~~~-~~~~ll~r~g~~~~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~ 82 (439)
T PRK12325 4 SRYFLPTLKENPKEAEI-VSHRLMLRAGMIRQQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRE 82 (439)
T ss_pred hhhhhHhhccCccccch-HHHHHHHHcCCccccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh
Confidence 45688887777666653 55555 3446799999999999999999999999999999999999999999999975
Q ss_pred hhhh--hhccccEEeecCCCCeEeeCC---CCcHHHHHHHHHhCCCCCCCeEEEEecceeecC-CCCCC--cccceEEee
Q 018556 123 KAGE--EIRDQLYCFEDRGNRRVALRP---ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWN 194 (354)
Q Consensus 123 ~~g~--~~~~~l~~f~D~~G~~l~LRp---D~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g 194 (354)
+|+ ...++||++.|++++.++||| +++.+++|....+. +++|+|+||+|+|||+| +++.| |.|||+|.+
T Consensus 83 -sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~sy--rdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D 159 (439)
T PRK12325 83 -SGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSY--KDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKD 159 (439)
T ss_pred -cCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhc--hhhchHheEecCEecCCCCCCCCccccceEeEec
Confidence 476 367899999999999999999 67788888777764 46999999999999999 88888 999999999
Q ss_pred eeEeccCCh---hhHHHHHHHHHHHHHHhcCC
Q 018556 195 MDIIGVPAV---TAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 195 ~Ei~g~~~~---~aDaEvi~l~~e~l~~lgl~ 223 (354)
+++|+.+.. ....+++.++.++|+.||++
T Consensus 160 ~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~ 191 (439)
T PRK12325 160 AYSFDLDEEGARHSYNRMFVAYLRTFARLGLK 191 (439)
T ss_pred cEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999987533 35678999999999999986
No 32
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.86 E-value=3.6e-21 Score=180.80 Aligned_cols=148 Identities=20% Similarity=0.265 Sum_probs=123.6
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCC--CeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCc-
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFG--FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT- 150 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~G--y~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T- 150 (354)
..++|++|++|.+++++++|++.+++.|.++| |++|+||++++.++|..+.|+. |.+++.++||||+|
T Consensus 19 ~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~---------d~~~~~~~Lrp~~~~ 89 (254)
T cd00774 19 GGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPV---------ESGGNLGYLRPETAQ 89 (254)
T ss_pred cChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeeccc---------CCCCcccccCCcccc
Confidence 34899999999999999999999999999996 9999999999997776543332 55677899999999
Q ss_pred ---HHHHHHHHHhCCCCCCCeEEEEecceeecCCCCC---CcccceEEeeeeEeccCChh--hHHHHHHHHHHHHHHhcC
Q 018556 151 ---PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTR---GRRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGI 222 (354)
Q Consensus 151 ---~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~---Gr~rEf~Q~g~Ei~g~~~~~--aDaEvi~l~~e~l~~lgl 222 (354)
++++|.+..+. .++|+|+||+|+|||+|.++. +|.|||+|+|+|+||.++.. .-..++.+..+++.++|+
T Consensus 90 ~~~~~~~~~~~~~~--~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~ 167 (254)
T cd00774 90 GIFVNFKNLLEFNR--RKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQ 167 (254)
T ss_pred hHHHHHHHHHHHhC--CCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCC
Confidence 78999888765 379999999999999996544 69999999999999986542 235689999999999998
Q ss_pred CCCcEEEEeC
Q 018556 223 TASDVGFRIS 232 (354)
Q Consensus 223 ~~~~~~i~lg 232 (354)
+...+.+...
T Consensus 168 ~~~~~r~~~~ 177 (254)
T cd00774 168 SPENLRLTDH 177 (254)
T ss_pred CccceEEEec
Confidence 7555555544
No 33
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.81 E-value=2.7e-19 Score=158.36 Aligned_cols=144 Identities=33% Similarity=0.524 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHH-HCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCC--
Q 018556 89 LRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS-- 163 (354)
Q Consensus 89 ~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~-- 163 (354)
++++|++.+++.+. ++||++|.+|.+.+.++|.. +|+. ..++||++.|.+++.++|||+.+.++++++......
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccccccccCCeeeeeecccccEEeccccccceeeeecceeeecc
Confidence 46789999999999 99999999999999999986 5664 567899999999999999999999999999987543
Q ss_pred CCCCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccC--ChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHH
Q 018556 164 VSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVP--AVTAEAELISSIITFFKRIGITASDVGFRISSRK 235 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~--~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~ 235 (354)
.++|+|+|++|+|||+| ++..| |.|||+|.++++||.+ ......+++..+.++++.||+. ++.+..++++
T Consensus 80 ~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~--~~~~~~~~~~ 154 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLE--PYRIVLSSSG 154 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSG--CEEEEEEETC
T ss_pred ccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCc--eEEEEEcCCC
Confidence 46899999999999999 66544 9999999999999998 3346689999999999999994 5888887754
No 34
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.80 E-value=1.8e-19 Score=169.94 Aligned_cols=154 Identities=22% Similarity=0.272 Sum_probs=123.0
Q ss_pred cccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCC----eE
Q 018556 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNR----RV 143 (354)
Q Consensus 70 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~----~l 143 (354)
+++.++++|+++++|.+++++++|++.+++.+.++||++|.||.+++.+++..++|+. ..++||++.|.+++ .+
T Consensus 15 ~~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~ 94 (261)
T cd00778 15 LIDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPL 94 (261)
T ss_pred CcccCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcE
Confidence 3455678899999999999999999999999999999999999999999986555553 37789999987754 79
Q ss_pred eeCCCCcHHHHHHHHHhCC-CCCCCeEEEEecceeecCCCC-CC--cccceEEeeeeEeccCChhhH---HHHHHHHHHH
Q 018556 144 ALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-RG--RRREHYQWNMDIIGVPAVTAE---AELISSIITF 216 (354)
Q Consensus 144 ~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~~-~G--r~rEf~Q~g~Ei~g~~~~~aD---aEvi~l~~e~ 216 (354)
+|||+..++++-++++... .+++|+|+|++|+|||+|.++ .| |.|||+|.+++++..+...++ .+++.++.++
T Consensus 95 ~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i 174 (261)
T cd00778 95 ALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEF 174 (261)
T ss_pred EEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHH
Confidence 9999944444444443322 246999999999999999544 44 999999999987544333333 4678889999
Q ss_pred HHHh-cCC
Q 018556 217 FKRI-GIT 223 (354)
Q Consensus 217 l~~l-gl~ 223 (354)
++.| |++
T Consensus 175 ~~~llgl~ 182 (261)
T cd00778 175 YEDLLAIP 182 (261)
T ss_pred HHHhCCCe
Confidence 9999 996
No 35
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.77 E-value=4.3e-18 Score=168.01 Aligned_cols=137 Identities=20% Similarity=0.329 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhh---hhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFI---RKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS 163 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~---~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~ 163 (354)
....+.+++.++++|..+||+||.||+|+..+.+. ...+..+.+++|++. +.++||||+|++++|+++.+..+
T Consensus 239 ~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e----e~lvLRPdLTPsLaR~La~N~~~ 314 (453)
T TIGR02367 239 EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD----KNFCLRPMLAPNLYNYLRKLDRA 314 (453)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec----CceEecccCHHHHHHHHHHhhhh
Confidence 35678999999999999999999999996544442 222233566888863 35899999999999999876544
Q ss_pred CCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 018556 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISS 233 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh 233 (354)
.+.|+|+||+|+|||+|.++.||.+||+|+|++++|.+...+|+| .++.++|+.||+. +.+. +|
T Consensus 315 l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDle--alL~e~Lr~LGId---feit-E~ 378 (453)
T TIGR02367 315 LPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLE--AIIKDFLDHLEID---FEIV-GD 378 (453)
T ss_pred ccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHH--HHHHHHHHHCCCc---eEEe-CC
Confidence 578999999999999999899999999999999999988777665 6999999999984 6663 44
No 36
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.75 E-value=2.9e-18 Score=174.19 Aligned_cols=153 Identities=25% Similarity=0.337 Sum_probs=130.0
Q ss_pred cccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCC----CCe
Q 018556 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG----NRR 142 (354)
Q Consensus 70 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~----G~~ 142 (354)
+++..+++|+++|+|.+++++++|++.+++.++++||++|.+|+|++.++|... |++ ..++||.+.|.+ ++.
T Consensus 21 li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~-~~h~~~f~~e~f~v~~~g~~~~~e~ 99 (472)
T TIGR00408 21 IIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKE-KDHIKGFEPEVYWITHGGLSKLDEP 99 (472)
T ss_pred CccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhh-cchhhhcchhcEEEecCCCCccCCc
Confidence 455578999999999999999999999999999999999999999999999864 443 378999999976 488
Q ss_pred EeeCCCCcHHHHHHHHHhCC-CCCCCeEEEEecceeecCCC-CC--CcccceEEeeeeEeccCChhhH---HHHHHHHHH
Q 018556 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TR--GRRREHYQWNMDIIGVPAVTAE---AELISSIIT 215 (354)
Q Consensus 143 l~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~-~~--Gr~rEf~Q~g~Ei~g~~~~~aD---aEvi~l~~e 215 (354)
++|||+.|++++.+++.... .+++|+|+|++|+|||+|.+ .. +|.|||+|.+++.+..+...++ .+++.++.+
T Consensus 100 l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~ 179 (472)
T TIGR00408 100 LALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKE 179 (472)
T ss_pred EEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999988877654 36899999999999999955 33 4999999999996655444444 457888899
Q ss_pred HHH-HhcCC
Q 018556 216 FFK-RIGIT 223 (354)
Q Consensus 216 ~l~-~lgl~ 223 (354)
+++ .||++
T Consensus 180 i~~~~lglp 188 (472)
T TIGR00408 180 FIENSLAIP 188 (472)
T ss_pred HHHhccCCe
Confidence 997 89986
No 37
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.74 E-value=1.1e-17 Score=170.17 Aligned_cols=152 Identities=23% Similarity=0.302 Sum_probs=127.2
Q ss_pred ccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCC----CCe
Q 018556 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NRR 142 (354)
Q Consensus 69 ~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~----G~~ 142 (354)
.+++...++|+++|+|.+++++++|++.+++.|+++||++|.+|+|.+.++|...+|+. ..++||.+.|.+ ++.
T Consensus 26 ~l~d~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~ 105 (477)
T PRK08661 26 ELADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEK 105 (477)
T ss_pred cCcccCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCce
Confidence 34566678999999999999999999999999999999999999999999997554543 478999999876 468
Q ss_pred EeeCCCC----cHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCC--CcccceEEeeeeEeccCChhhH---HHHHHHH
Q 018556 143 VALRPEL----TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTR--GRRREHYQWNMDIIGVPAVTAE---AELISSI 213 (354)
Q Consensus 143 l~LRpD~----T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~--Gr~rEf~Q~g~Ei~g~~~~~aD---aEvi~l~ 213 (354)
++|||+. |..+++++.++ +++|+|+|++|+|||+|.+.. +|.|||+|.+.+++..+...++ .+++.++
T Consensus 106 l~LrPtsE~~i~~~~~~~i~Sy---rdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y 182 (477)
T PRK08661 106 LALRPTSETIIYPMYKKWIQSY---RDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIY 182 (477)
T ss_pred EEEecCCcHHHHHHHHhhhcch---hhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHH
Confidence 9999999 66666666544 469999999999999995555 4999999999999776554444 4577888
Q ss_pred HHHH-HHhcCC
Q 018556 214 ITFF-KRIGIT 223 (354)
Q Consensus 214 ~e~l-~~lgl~ 223 (354)
.+++ +.||++
T Consensus 183 ~~i~~~~Lglp 193 (477)
T PRK08661 183 KEFFEDYLAIP 193 (477)
T ss_pred HHHHHHhcCCe
Confidence 9999 889986
No 38
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9e-17 Score=152.73 Aligned_cols=172 Identities=19% Similarity=0.264 Sum_probs=142.0
Q ss_pred CCCCCCcccCCCCCCCccccc-----ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhh
Q 018556 50 NGGRSGARSLSPSPVSDDLQK-----IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKA 124 (354)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~ 124 (354)
.|.+.+.+..... .+..+++ +......|++-++|.+.|..+++.+.+...|++-|.+.|..|.+.+.++|+. +
T Consensus 11 i~~~~~~~~q~~k-~~~aq~LL~e~GfI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWek-T 88 (457)
T KOG2324|consen 11 IFHLKSASNQTLK-SETAQELLQEVGFIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEK-T 88 (457)
T ss_pred ccchhhhhhhhcc-hhHHHHHHHHhCccccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHh-c
Confidence 4666555443222 2344444 5556778999999999999999999999999999999999999999999974 6
Q ss_pred hhh--hccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCC--CCCCCeEEEEecceeecC-CCCCC--cccceEEeeeeE
Q 018556 125 GEE--IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGK--SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDI 197 (354)
Q Consensus 125 g~~--~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~--~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei 197 (354)
|++ ..+++|++.|++|+.++|.|.----+.+++++... ..++|+++|++|+.||+| +|+.| |-|||++.|++.
T Consensus 89 gRw~~~gsEl~rl~Dr~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYs 168 (457)
T KOG2324|consen 89 GRWDAMGSELFRLHDRKGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYS 168 (457)
T ss_pred CcccccchhheEeeccCCCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhc
Confidence 876 47899999999999999999666666666666543 468999999999999999 89888 899999999999
Q ss_pred eccCChh---hHHHHHHHHHHHHHHhcCC
Q 018556 198 IGVPAVT---AEAELISSIITFFKRIGIT 223 (354)
Q Consensus 198 ~g~~~~~---aDaEvi~l~~e~l~~lgl~ 223 (354)
|+.+... ...-|......+|++||++
T Consensus 169 Fd~~~etA~qTy~~v~~aY~~iFkqL~~p 197 (457)
T KOG2324|consen 169 FDSDEETAQQTYQLVDQAYDRIFKQLGLP 197 (457)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9987554 3456788889999999987
No 39
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.67 E-value=2.1e-16 Score=161.31 Aligned_cols=139 Identities=23% Similarity=0.401 Sum_probs=117.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccch-------------------HHhhhhhhh--hh----------
Q 018556 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-------------------ALFIRKAGE--EI---------- 128 (354)
Q Consensus 80 ~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~-------------------~~~~~~~g~--~~---------- 128 (354)
+|++|.+...+.++.+.++++|..+||++|.+|.+|.. |+|..+.+. ++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~ 304 (489)
T PRK04172 225 PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKE 304 (489)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999943 544322211 00
Q ss_pred ----------ccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEe
Q 018556 129 ----------RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDII 198 (354)
Q Consensus 129 ----------~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~ 198 (354)
..=+|.|.|..++.++|||++|++++|+++++. ..|+|+|++|+|||+++++.+|.+||+|++++++
T Consensus 305 ~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~---~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~ 381 (489)
T PRK04172 305 VHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRP---EPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVM 381 (489)
T ss_pred HHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcC---CCCeEEEEecceEcCCCCCcccCCchheEEEEEE
Confidence 001577777788999999999999999999864 4699999999999999888888999999999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHhcCC
Q 018556 199 GVPAVTAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 199 g~~~~~aDaEvi~l~~e~l~~lgl~ 223 (354)
|.+ ...+|++.++.++++.+|++
T Consensus 382 G~~--~~f~elkg~l~~ll~~lGi~ 404 (489)
T PRK04172 382 GED--VSFRDLLGILKEFYKRLGFE 404 (489)
T ss_pred eCC--CCHHHHHHHHHHHHHHhCCc
Confidence 974 34789999999999999985
No 40
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.8e-16 Score=157.80 Aligned_cols=149 Identities=26% Similarity=0.371 Sum_probs=126.3
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCC
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPE 148 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD 148 (354)
+..++.+|+.-|+|.+.+++++|++.+++.+.+.|++++-.|++.+.++|.. +|+. ..++||++.|++++.++|||.
T Consensus 31 ~i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkE-s~r~~~f~~El~~v~drg~~~l~L~PT 109 (500)
T COG0442 31 MIRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKE-SGRWEGFGPELFRVKDRGDRPLALRPT 109 (500)
T ss_pred ceecccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHH-hChhhhcchhhEEEEccCCceeeeCCC
Confidence 4445899999999999999999999999999999999999999999777764 5775 578999999999999999994
Q ss_pred C----cHHHHHHHHHhCCCCCCCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCChhhHHH---HHHHHHHHHH
Q 018556 149 L----TPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFFK 218 (354)
Q Consensus 149 ~----T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~~~aDaE---vi~l~~e~l~ 218 (354)
. |.-+..++.++ .++|+++||++.+||+| +|..| |.|||+..+++.|..+...++.+ .+.+..++|.
T Consensus 110 sEe~it~~~~~~i~SY---kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~ 186 (500)
T COG0442 110 SEEVITDMFRKWIRSY---KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFL 186 (500)
T ss_pred cHHHHHHHHHHHhhhh---hhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 33333333333 57999999999999999 77888 99999999999999987776654 5667799998
Q ss_pred HhcCC
Q 018556 219 RIGIT 223 (354)
Q Consensus 219 ~lgl~ 223 (354)
++|+.
T Consensus 187 ~i~l~ 191 (500)
T COG0442 187 RLPLI 191 (500)
T ss_pred hCCce
Confidence 88874
No 41
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.62 E-value=3.2e-15 Score=143.60 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=123.7
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHH
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
-.|+..++|.++++.+.|++.+++.+.+.||++|.+|.+.+.++|.. +|+. ..++||++.| +.++|+|+.+.++
T Consensus 41 G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~-sg~~~~~~~~~f~v~~---~~~~L~pt~e~~~ 116 (297)
T cd00770 41 GSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEG-TGQLPKFDEQLYKVEG---EDLYLIATAEVPL 116 (297)
T ss_pred CCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhh-cCcCccChhcccEecC---CCEEEeecCCHHH
Confidence 34688899999999999999999999999999999999999999975 5763 4678999965 6799999999999
Q ss_pred HHHHHHhCC-CCCCCeEEEEecceeecCCC-C----CC--cccceEEeeeeEeccCCh--hhHHHHHHHHHHHHHHhcCC
Q 018556 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERM-T----RG--RRREHYQWNMDIIGVPAV--TAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 154 aR~~a~~~~-~~~~PlR~~y~g~VfR~e~~-~----~G--r~rEf~Q~g~Ei~g~~~~--~aDaEvi~l~~e~l~~lgl~ 223 (354)
+.+++.... ..++|+|++++|+|||+|.. . .| |.|||.|.++.+|+.++. ..-.+++.++.++++.||++
T Consensus 117 ~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~ 196 (297)
T cd00770 117 AALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLP 196 (297)
T ss_pred HHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999987543 35799999999999999943 2 45 899999999999988643 23467899999999999997
No 42
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.61 E-value=6e-15 Score=148.56 Aligned_cols=167 Identities=23% Similarity=0.336 Sum_probs=129.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHCCCeEecCC-cccch----H-Hhhhhhhhh--hccccEEeecC-------------
Q 018556 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFP-VLESE----A-LFIRKAGEE--IRDQLYCFEDR------------- 138 (354)
Q Consensus 80 ~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP-~le~~----~-~~~~~~g~~--~~~~l~~f~D~------------- 138 (354)
+...+....-...+.+.++++|...||+++.+| .+|.. | ++... .+. -..+.|-+.++
T Consensus 221 ~~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~Pq-dHPARd~~DTFyl~~~~~~~~~~~p~~~~ 299 (494)
T PTZ00326 221 KKIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQ-QHPARDAQDTFFLSKPETSKVNDLDDDYV 299 (494)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCC-CCCCCCcCceEEEcCccccccccCcHHHH
Confidence 445555666788899999999999999999876 56653 1 22211 110 12345544321
Q ss_pred ------------------------CCCeEeeCCCCcHHHHHHHHHhCCC----C-CCCeEEEEecceeecCCCCCCcccc
Q 018556 139 ------------------------GNRRVALRPELTPSLARLVIQKGKS----V-SLPLKWFAVGQCWRYERMTRGRRRE 189 (354)
Q Consensus 139 ------------------------~G~~l~LRpD~T~~iaR~~a~~~~~----~-~~PlR~~y~g~VfR~e~~~~Gr~rE 189 (354)
..+.++||+++|+..+|+++++... . ..|.|+|++|+|||++.++.+|.+|
T Consensus 300 ~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~e 379 (494)
T PTZ00326 300 ERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAE 379 (494)
T ss_pred HHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCce
Confidence 1147899999999999999986421 1 2499999999999999999999999
Q ss_pred eEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEE-----------------------EEeCCHHHHH-HHHHHCC
Q 018556 190 HYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVG-----------------------FRISSRKVLQ-EVLRCHS 245 (354)
Q Consensus 190 f~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~-----------------------i~lgh~~il~-~il~~~g 245 (354)
|+|++.+++|.+. ++++++.++.++++++|+..-.++ |+||+.++++ .+|+.+|
T Consensus 380 FhQ~Eg~vi~~~~--s~~~L~~~l~~f~~~lG~~~~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~G 457 (494)
T PTZ00326 380 FHQVEGFVIDRNL--TLGDLIGTIREFFRRIGITKLRFKPAFNPYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMG 457 (494)
T ss_pred eEEEEEEEEeCCC--CHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcC
Confidence 9999999999875 788999999999999998532255 9999999999 9999999
Q ss_pred CChh
Q 018556 246 IPEH 249 (354)
Q Consensus 246 l~~~ 249 (354)
++++
T Consensus 458 i~~~ 461 (494)
T PTZ00326 458 FPED 461 (494)
T ss_pred CCCc
Confidence 9754
No 43
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.61 E-value=4.8e-15 Score=146.63 Aligned_cols=131 Identities=24% Similarity=0.372 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhh----hhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE----EIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~----~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
..++++.++++|..+||.||.||.|...+.|.. .|. ...+.+|.+ ++.++|||++|+++++.++.+....+
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~-~g~~~g~~i~~~my~i----deel~LRpsLtPsLlr~la~n~k~~~ 280 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRV----DKNFCLRPMLAPGLYNYLRKLDRILP 280 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHH-hCCCCcccchhhheee----CCceEehhhhHHHHHHHHHhhhhccc
Confidence 688999999999999999999999988776643 222 234567765 24699999999999999886554457
Q ss_pred CCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q 018556 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~ 230 (354)
.|+|+|++|+|||++.++.++.+||+|++++++|.+...+ |+..++.++|+.||++ +++.
T Consensus 281 ~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~--dL~~lleeLL~~LGI~---f~i~ 340 (417)
T PRK09537 281 DPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRE--NLENIIDDFLKHLGID---YEII 340 (417)
T ss_pred CCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHH--HHHHHHHHHHHHCCCC---cEEe
Confidence 8999999999999998888899999999999998765554 4779999999999984 6555
No 44
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.57 E-value=5e-14 Score=126.75 Aligned_cols=129 Identities=29% Similarity=0.471 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCCCeE
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR 169 (354)
++++++.+++.|..+||+||.||+|++.+.+.. .|.. .+.+..+.+.+++..+|||++|+++++.++.+. ...|+|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~--~~~~~~ 77 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEK-AGHE-PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI--RKLPLR 77 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHH-cCcc-HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc--ccCCEE
Confidence 578899999999999999999999999877653 2322 234556667788999999999999999999876 478999
Q ss_pred EEEecceeecCCCCC--CcccceEEeeeeEeccCCh--hhHHHHHHHHHHHHHHhcC
Q 018556 170 WFAVGQCWRYERMTR--GRRREHYQWNMDIIGVPAV--TAEAELISSIITFFKRIGI 222 (354)
Q Consensus 170 ~~y~g~VfR~e~~~~--Gr~rEf~Q~g~Ei~g~~~~--~aDaEvi~l~~e~l~~lgl 222 (354)
+|++|+|||.+.... +|.+||.|+|++++|.... ....|++.++.++++.+|+
T Consensus 78 lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~ 134 (211)
T cd00768 78 LAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGI 134 (211)
T ss_pred EEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCC
Confidence 999999999975443 5679999999999997653 2568899999999999997
No 45
>PLN02837 threonine-tRNA ligase
Probab=99.55 E-value=4.6e-14 Score=147.81 Aligned_cols=161 Identities=18% Similarity=0.279 Sum_probs=135.6
Q ss_pred ccCC--CCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeC
Q 018556 71 IDVN--PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALR 146 (354)
Q Consensus 71 ~~~~--~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LR 146 (354)
|+.+ ...|+..|+|.++++++.|++.+++...++||++|.||.+-..++|.. +|+. ..++||++.|..++.++||
T Consensus 229 f~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sGh~~~~~~~mf~~~~~~~~~y~l~ 307 (614)
T PLN02837 229 FSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKT-SGHLDFYKENMYDQMDIEDELYQLR 307 (614)
T ss_pred cccCcCcCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhh-cCCcccchhhcccccCCCCceEEEC
Confidence 4443 357999999999999999999999999999999999999999999975 6764 4789999999889999999
Q ss_pred CCCcHHHHHHHHHhCC-CCCCCeEEEEecceeecCCC--CCC--cccceEEeeeeEeccCChh--hHHHHHHHHHHHHHH
Q 018556 147 PELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERM--TRG--RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKR 219 (354)
Q Consensus 147 pD~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~--~~G--r~rEf~Q~g~Ei~g~~~~~--aDaEvi~l~~e~l~~ 219 (354)
|.-.+.++-++..... .+++|+|++++|+|||+|.. ..| |.|||+|.++++|..++.. .-.+++.++.++++.
T Consensus 308 p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~ 387 (614)
T PLN02837 308 PMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQ 387 (614)
T ss_pred CCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877653 36899999999999999964 345 9999999999999886542 125688999999999
Q ss_pred hcCCCCcEEEEeCCH
Q 018556 220 IGITASDVGFRISSR 234 (354)
Q Consensus 220 lgl~~~~~~i~lgh~ 234 (354)
||++ .+.+.++.+
T Consensus 388 lg~~--~~~~~~~t~ 400 (614)
T PLN02837 388 FGFS--KYEINLSTR 400 (614)
T ss_pred cCCC--eEEEEecCC
Confidence 9997 456666654
No 46
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.54 E-value=6.5e-14 Score=141.79 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=119.2
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHH--CCCeEecCCcccchHHhhhhhhhh--hccccEEee--------c------
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRL--FGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFE--------D------ 137 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~--~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~--------D------ 137 (354)
..|+.||+|.++.+++.|++.+++.+.. .||.+|+||.+.+.++|.. ||+. ..+.||... |
T Consensus 27 ~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~-SGH~~~f~d~m~~~~~~~~~~r~d~~~~~~ 105 (456)
T PRK04173 27 LAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEA-SGHVDNFSDPLVECKKCKKRYRADHLIEEL 105 (456)
T ss_pred hhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhh-cCCccccCCceeEeCCCCCEeechhhhHHH
Confidence 6799999999999999999999999988 8999999999999999985 5764 344555432 1
Q ss_pred -------------------------------------------------CCCCeEeeCCCCcHHHHHHHHHhCC-CC-CC
Q 018556 138 -------------------------------------------------RGNRRVALRPELTPSLARLVIQKGK-SV-SL 166 (354)
Q Consensus 138 -------------------------------------------------~~G~~l~LRpD~T~~iaR~~a~~~~-~~-~~ 166 (354)
.++..+.|||+....+--.+.+... .+ ++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~dL 185 (456)
T PRK04173 106 GIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARKKL 185 (456)
T ss_pred hhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccccC
Confidence 1233567899888775544444322 24 79
Q ss_pred CeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCChhhH--HHHHHHHHHHHHHhcCCCCcEEEE
Q 018556 167 PLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGITASDVGFR 230 (354)
Q Consensus 167 PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~~~aD--aEvi~l~~e~l~~lgl~~~~~~i~ 230 (354)
|+|++++|+|||+| .+..| |.|||+|.++++|..++...+ ..++.++.+++..+|++...+.+.
T Consensus 186 Plr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s 254 (456)
T PRK04173 186 PFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPENLRFR 254 (456)
T ss_pred CeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 99999999999999 44556 899999999999998765322 567889999999999973334444
No 47
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.46 E-value=9.9e-13 Score=137.25 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=135.4
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHH
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
..|..-|+|.++++++.|++.+++.+.++||.+|.||.+-..+++.. +|+. ..++||.+ +.+++.++|||..+++.
T Consensus 216 ~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~-sgh~~~f~e~my~v-~~~~e~l~Lrp~~c~~~ 293 (613)
T PRK03991 216 DVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAI-REHADKFGERQYRV-KSDKKDLMLRFAACFGQ 293 (613)
T ss_pred CeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhh-cccccccchhceEe-cCCCceEEEecCCCHHH
Confidence 46999999999999999999999999999999999999988877754 3543 47789987 45578999999999999
Q ss_pred HHHHHHhCC-CCCCCeEEEEecc-eeecCCCC--CC--cccceEEeeeeEeccCChhhH---HHHHHHHHHHHHHhcCCC
Q 018556 154 ARLVIQKGK-SVSLPLKWFAVGQ-CWRYERMT--RG--RRREHYQWNMDIIGVPAVTAE---AELISSIITFFKRIGITA 224 (354)
Q Consensus 154 aR~~a~~~~-~~~~PlR~~y~g~-VfR~e~~~--~G--r~rEf~Q~g~Ei~g~~~~~aD---aEvi~l~~e~l~~lgl~~ 224 (354)
..++..... .+++|+|+|++|+ +||+|.++ .| |.|||+|.++++|+.+...+. .+++.++.++++.||++
T Consensus 294 ~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~- 372 (613)
T PRK03991 294 FLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRD- 372 (613)
T ss_pred HHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 988876653 3679999999999 99999553 45 899999999999998533333 46788999999999996
Q ss_pred CcEEEEeCC--------HHHHHHHHHHCCCC
Q 018556 225 SDVGFRISS--------RKVLQEVLRCHSIP 247 (354)
Q Consensus 225 ~~~~i~lgh--------~~il~~il~~~gl~ 247 (354)
+.+.++. .+.+..+++.+|.+
T Consensus 373 --~~~~~~~t~df~~~~~~~l~~~l~~~g~~ 401 (613)
T PRK03991 373 --YEVAIRFTEDFYEENKDWIVELVKREGKP 401 (613)
T ss_pred --eEEEecCHHHHhhhHHHHHHHHHHHcCCC
Confidence 5555442 23455677777765
No 48
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.9e-12 Score=133.31 Aligned_cols=157 Identities=25% Similarity=0.417 Sum_probs=135.7
Q ss_pred CCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHH
Q 018556 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (354)
Q Consensus 75 ~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~ 152 (354)
...|+.-|+|.++.+++.+++.++.....+||++|.||.+...++|.. +|+. ..++||.+. ..++.++|||.-++.
T Consensus 208 ~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~-SGH~~~y~e~mf~~~-~~~~~~~lKpmNCpg 285 (589)
T COG0441 208 EGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWEL-SGHWDNYKEDMFLTE-SDDREYALKPMNCPG 285 (589)
T ss_pred cCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchh-ccchhhccccceeec-cCChhheeeeccCHh
Confidence 689999999999999999999999999999999999999999999986 5775 467898775 445899999999999
Q ss_pred HHHHHHHhCC-CCCCCeEEEEecceeecCCCC--CC--cccceEEeeeeEeccCChhhH--HHHHHHHHHHHHHhcCCCC
Q 018556 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGITAS 225 (354)
Q Consensus 153 iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~~--~G--r~rEf~Q~g~Ei~g~~~~~aD--aEvi~l~~e~l~~lgl~~~ 225 (354)
.+.++.+... .+.+|+|++..|.|||+|.++ .| |.|.|+|-+++||+..+...| .+++.++.++++.+|+.
T Consensus 286 h~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~-- 363 (589)
T COG0441 286 HILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFT-- 363 (589)
T ss_pred HHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCc--
Confidence 9999887765 367999999999999999765 45 999999999999999554333 57889999999999997
Q ss_pred cEEEEeCCHH
Q 018556 226 DVGFRISSRK 235 (354)
Q Consensus 226 ~~~i~lgh~~ 235 (354)
++.+.++.+.
T Consensus 364 ~y~~~ls~r~ 373 (589)
T COG0441 364 DYEVKLSTRP 373 (589)
T ss_pred eEEEEEecCC
Confidence 6777777663
No 49
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.37 E-value=5.8e-12 Score=126.30 Aligned_cols=143 Identities=18% Similarity=0.275 Sum_probs=120.5
Q ss_pred CCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHHH
Q 018556 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLA 154 (354)
Q Consensus 77 ~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~ia 154 (354)
.|+..|.|.++++.+.+.+.+.+.+.+.||++|.+|.+-+.++|.. +|.. ..++||++.| +.++|+|....+++
T Consensus 163 ~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~-~G~~~~f~~~~y~i~~---~~~~L~pTsE~~~~ 238 (418)
T TIGR00414 163 SRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDG-TGQLPKFEEDIFKLED---TDLYLIPTAEVPLT 238 (418)
T ss_pred CCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cCccccccccceEecC---CCEEEEeCCcHHHH
Confidence 4578899999999999999999999999999999999999999974 5654 4678999854 45899999999999
Q ss_pred HHHHHhCC-CCCCCeEEEEecceeecCCCC-----CC--cccceEEeeeeEeccCChh--hHHHHHHHHHHHHHHhcCC
Q 018556 155 RLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGIT 223 (354)
Q Consensus 155 R~~a~~~~-~~~~PlR~~y~g~VfR~e~~~-----~G--r~rEf~Q~g~Ei~g~~~~~--aDaEvi~l~~e~l~~lgl~ 223 (354)
-+++.... ..++|+|++++++|||+|... .| |.|||.+.++.+|..+... .-.+++.++.++++.||++
T Consensus 239 ~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp 317 (418)
T TIGR00414 239 NLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELP 317 (418)
T ss_pred HHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 88886643 357899999999999999432 35 8999999999999975432 2356889999999999997
No 50
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.32 E-value=1.9e-11 Score=122.95 Aligned_cols=144 Identities=22% Similarity=0.297 Sum_probs=121.0
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHH-HCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHH
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~ 152 (354)
-.|+..|.|.++++.+.+.+.+.+... ++||++|.+|.+-+.++|.. +|+. ..++||++. +..++|+|....+
T Consensus 159 G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~-~G~~~~f~~~ly~i~---~~~~~L~pTsE~~ 234 (425)
T PRK05431 159 GSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYG-TGQLPKFEEDLYKIE---DDDLYLIPTAEVP 234 (425)
T ss_pred CceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhh-cCccccchhhceEec---CCCEEEEeCCcHH
Confidence 446888899999999999999988887 99999999999999999875 4654 467899985 4679999999999
Q ss_pred HHHHHHHhCC-CCCCCeEEEEecceeecCCC-----CCC--cccceEEeeeeEeccCChh--hHHHHHHHHHHHHHHhcC
Q 018556 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERM-----TRG--RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGI 222 (354)
Q Consensus 153 iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~-----~~G--r~rEf~Q~g~Ei~g~~~~~--aDaEvi~l~~e~l~~lgl 222 (354)
++.+++.... ..++|+|++.+++|||+|.. ..| |.+||++.+..+|+.++.. .-.+++.++.++++.||+
T Consensus 235 l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lgl 314 (425)
T PRK05431 235 LTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLEL 314 (425)
T ss_pred HHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999887654 35789999999999999952 245 8999999999999986322 224688999999999999
Q ss_pred C
Q 018556 223 T 223 (354)
Q Consensus 223 ~ 223 (354)
+
T Consensus 315 p 315 (425)
T PRK05431 315 P 315 (425)
T ss_pred c
Confidence 7
No 51
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.9e-11 Score=118.81 Aligned_cols=159 Identities=23% Similarity=0.319 Sum_probs=133.4
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCC
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPE 148 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD 148 (354)
+.-++.+|.-.|+|.++++++.+.+.++..++++||+||.||.+-...+|+. +|++ ..++||+|.- ....++|.|+
T Consensus 176 ff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~-SGHwqnY~enmF~~e~-eke~~~LKPM 253 (560)
T KOG1637|consen 176 FFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWET-SGHWQNYSENMFKFEV-EKEEFALKPM 253 (560)
T ss_pred eeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhh-ccchhhhhhhceeeee-chhhhccCcc
Confidence 4557889999999999999999999999999999999999999999999985 6876 5788999864 5566999999
Q ss_pred CcHHHHHHHHHhCCC-CCCCeEEEEecceeecCCCC--CC--cccceEEeeeeEeccCCh-hhH-HHHHHHHHHHHHHhc
Q 018556 149 LTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAV-TAE-AELISSIITFFKRIG 221 (354)
Q Consensus 149 ~T~~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~~~--~G--r~rEf~Q~g~Ei~g~~~~-~aD-aEvi~l~~e~l~~lg 221 (354)
-+++.+-+.+++... +++|+|+.-+|.+.|+|-++ .| |.|+|+|-+++||+..+. ..+ .-++..+..++.-+|
T Consensus 254 NCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl~~vY~~fg 333 (560)
T KOG1637|consen 254 NCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFLDYVYGVFG 333 (560)
T ss_pred CCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHHHHHHHhcc
Confidence 999999888877653 68999999999999999543 33 999999999999998764 444 347777777777777
Q ss_pred CCCCcEEEEeCCH
Q 018556 222 ITASDVGFRISSR 234 (354)
Q Consensus 222 l~~~~~~i~lgh~ 234 (354)
. .+.+.++.+
T Consensus 334 f---~f~l~lSTR 343 (560)
T KOG1637|consen 334 F---TFKLNLSTR 343 (560)
T ss_pred c---cceeEeccC
Confidence 5 467777764
No 52
>PRK09350 poxB regulator PoxA; Provisional
Probab=99.14 E-value=6.4e-11 Score=114.30 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeec-CCCCeEeeC--CCCcHHHHHHHHHhCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALR--PELTPSLARLVIQKGK 162 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D-~~G~~l~LR--pD~T~~iaR~~a~~~~ 162 (354)
-.+++..+...+++.|.++||.||.||+++.+......... ...+ |.+.| ..|+.+.|| |++| +.|.++..
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~-f~~~-y~~~~~~~~~~~~L~~SPe~~--~kr~la~~-- 77 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVP-FETR-FVGPGASQGKTLWLMTSPEYH--MKRLLAAG-- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCc-eeee-eccccccCCcceEEecCHHHH--HHHHhhcc--
Confidence 46789999999999999999999999999876543211000 1112 44445 568999999 9999 77767643
Q ss_pred CCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHH
Q 018556 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFK 218 (354)
Q Consensus 163 ~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~ 218 (354)
.-|+||+|+|||++..+.+|..||+|+++|..+.+ -.+++.++.+++.
T Consensus 78 ----~~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d----~~dlm~~~E~li~ 125 (306)
T PRK09350 78 ----SGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHYD----MYRLMNEVDDLLQ 125 (306)
T ss_pred ----ccceEEecceeecCCCCCCCCcHHHhhhhhhhCCC----HHHHHHHHHHHHH
Confidence 23999999999999877889999999999988763 2334444444443
No 53
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.12 E-value=2.8e-10 Score=116.00 Aligned_cols=152 Identities=18% Similarity=0.285 Sum_probs=122.0
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHH-HHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecC---------
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEV-SRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--------- 138 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~v-f~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~--------- 138 (354)
++.-..+|+.-+.|.++++.+.+++.+++. ++++||+++.+|.+-+.++|.. +|+. ..++||.+...
T Consensus 207 ldk~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~k-sGhl~~F~e~my~V~~~~~d~e~~~~ 285 (517)
T PRK00960 207 VKRFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYK-MRYLEGLPEGMYYVCPPKRDPEYFEE 285 (517)
T ss_pred ccccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhh-cCCccCChhhceEeeccccccccccc
Confidence 555567999999999999999999999875 7889999999999999999975 4653 46788877421
Q ss_pred --------------------CCCeEeeCCCCcHHHHHHHHHhCC-CCCCCeEEEE-ecceeecCCC-CCC--cccceEEe
Q 018556 139 --------------------GNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFA-VGQCWRYERM-TRG--RRREHYQW 193 (354)
Q Consensus 139 --------------------~G~~l~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y-~g~VfR~e~~-~~G--r~rEf~Q~ 193 (354)
....++|||..++++.-+++.... ..++|+|++. .|.|||+|.. ..| |.+||.|.
T Consensus 286 ~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kv 365 (517)
T PRK00960 286 FVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRI 365 (517)
T ss_pred hhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEE
Confidence 134679999999999988885543 3578999998 7799999942 344 89999999
Q ss_pred eeeEeccCChh-hH-HHHHHHHHHHHHHhcCC
Q 018556 194 NMDIIGVPAVT-AE-AELISSIITFFKRIGIT 223 (354)
Q Consensus 194 g~Ei~g~~~~~-aD-aEvi~l~~e~l~~lgl~ 223 (354)
.+.++|.++.. .+ .+++..+.++++.||++
T Consensus 366 E~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp 397 (517)
T PRK00960 366 EIVWLGTPEQVEEIRDELLKYAHILAEKLDLE 397 (517)
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999986532 22 35677888888999996
No 54
>PLN02678 seryl-tRNA synthetase
Probab=99.01 E-value=3.3e-09 Score=106.87 Aligned_cols=146 Identities=16% Similarity=0.231 Sum_probs=108.2
Q ss_pred CcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHHHHH
Q 018556 79 TRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLARL 156 (354)
Q Consensus 79 ~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~iaR~ 156 (354)
+..+.+.++++.+.|.+.+.+...++||.+|.||.+-..++|.. +|+. ..++||++.+.+. ...|-|-.-++++-+
T Consensus 166 ~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~-sG~~~~f~e~my~i~~~~~-~~yLi~TaE~~l~~~ 243 (448)
T PLN02678 166 GYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAK-CAQLAQFDEELYKVTGEGD-DKYLIATSEQPLCAY 243 (448)
T ss_pred eEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhh-cCCcccchhcCceecCCCC-ceeeecccccccChH
Confidence 33344489999999999999999999999999999999999875 5653 4678999865433 444555322333333
Q ss_pred HHHhC-CCCCCCeEEEEecceeecCCCC-----CC--cccceEEeeeeEeccCCh----hhHHHHHHHHHHHHHHhcCCC
Q 018556 157 VIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV----TAEAELISSIITFFKRIGITA 224 (354)
Q Consensus 157 ~a~~~-~~~~~PlR~~y~g~VfR~e~~~-----~G--r~rEf~Q~g~Ei~g~~~~----~aDaEvi~l~~e~l~~lgl~~ 224 (354)
++... ...++|+|++.+++|||.|... .| |.++|+|..+-.|..++. ..-.|++..+.++|+.|||+
T Consensus 244 h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lp- 322 (448)
T PLN02678 244 HRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIP- 322 (448)
T ss_pred HhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCC-
Confidence 33222 2357899999999999999642 34 889999999877766542 22357899999999999996
Q ss_pred CcEEE
Q 018556 225 SDVGF 229 (354)
Q Consensus 225 ~~~~i 229 (354)
|.+
T Consensus 323 --yrv 325 (448)
T PLN02678 323 --YQV 325 (448)
T ss_pred --eEE
Confidence 665
No 55
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=98.98 E-value=8.7e-09 Score=104.19 Aligned_cols=159 Identities=17% Similarity=0.229 Sum_probs=124.5
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHH-HHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecC---------
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQ-EVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--------- 138 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~-~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~--------- 138 (354)
++.-+.+|+.-+.|.++++.+.+.+.+. ..++++||+++.+|.+-+.+.+... |.. ..+++|.+...
T Consensus 207 idk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~-ghl~gF~~e~y~Vt~~~~d~d~~~~ 285 (520)
T TIGR00415 207 VKKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKM-RYLEGLPEGMYYCCAPKRDPELFEE 285 (520)
T ss_pred eeEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHccc-CCCCCCchhheEEecCCCCcchhhc
Confidence 4555678999999999999999999995 6778899999999999999988653 432 46778876421
Q ss_pred --------------------CCCeEeeCCCCcHHHHHHHHHhCC-CCCCCeEEEE-ecceeecCCC-CCC--cccceEEe
Q 018556 139 --------------------GNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFA-VGQCWRYERM-TRG--RRREHYQW 193 (354)
Q Consensus 139 --------------------~G~~l~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y-~g~VfR~e~~-~~G--r~rEf~Q~ 193 (354)
....++|+|-...++.-+++.... ..++|+|+++ .++|||+|.. ..| |.+||.+.
T Consensus 286 f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kv 365 (520)
T TIGR00415 286 FKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRV 365 (520)
T ss_pred cccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEE
Confidence 123689999999999988886653 3578999999 6689999952 345 89999999
Q ss_pred eeeEeccCChh-h-HHHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 018556 194 NMDIIGVPAVT-A-EAELISSIITFFKRIGITASDVGFRISS 233 (354)
Q Consensus 194 g~Ei~g~~~~~-a-DaEvi~l~~e~l~~lgl~~~~~~i~lgh 233 (354)
.+..+|.+... . -.+.+..+.++++.|+|+ +.+..++
T Consensus 366 E~v~~~tpEea~e~~e~mle~~~~~l~~L~Lp---yrv~~ad 404 (520)
T TIGR00415 366 ECVWIAEPEETEEIRDKTLELAEDAADELDLE---WWTEVGD 404 (520)
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC---eEEeecC
Confidence 88888875422 1 235788899999999996 6777655
No 56
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=98.93 E-value=3.5e-09 Score=108.83 Aligned_cols=124 Identities=25% Similarity=0.365 Sum_probs=97.5
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHH-HHCCCeEecCCcccchHHhhhhhhhh--hcccc--------------------
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEE--IRDQL-------------------- 132 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf-~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l-------------------- 132 (354)
..|+.||+|.+++++++|++.|++.| ...|+.+|++|++.+.++|.. +|+. ..+-|
T Consensus 26 ~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~a-SGh~~~F~D~mv~~~~~~~~~RaD~l~e~~~ 104 (551)
T TIGR00389 26 LAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKA-SGHVDNFTDWMVDCKSCKERFRADHLIEEKL 104 (551)
T ss_pred ccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHh-cCCccccCCceeecCCCCCEecchHHHHHHh
Confidence 67999999999999999999999999 588999999999999999975 4653 00000
Q ss_pred ------------------EEeecC------------------------CCCeEeeCCCCcHH----HHHHHHHhCCCCCC
Q 018556 133 ------------------YCFEDR------------------------GNRRVALRPELTPS----LARLVIQKGKSVSL 166 (354)
Q Consensus 133 ------------------~~f~D~------------------------~G~~l~LRpD~T~~----iaR~~a~~~~~~~~ 166 (354)
+.+.-+ ++....|||+.... +-|.+..+. ..+
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~~--~kl 182 (551)
T TIGR00389 105 GKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFFR--RKL 182 (551)
T ss_pred hhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhhHHhHHHHHHhcC--CCC
Confidence 001101 13468999998876 455555443 479
Q ss_pred CeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCC
Q 018556 167 PLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPA 202 (354)
Q Consensus 167 PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~ 202 (354)
|+-..++|++||+| .|+.| |.|||.|+.+|.|-.++
T Consensus 183 PfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F~~p~ 221 (551)
T TIGR00389 183 PFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEFFVHPL 221 (551)
T ss_pred CeeehhhhHhhhcccCcccceEEeehhhhchhheecCcc
Confidence 99999999999999 88888 99999999999997753
No 57
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.92 E-value=6.1e-09 Score=98.79 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeec-CCCCeEeeC--CCCcHHHHHHHHHhCCCC
Q 018556 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALR--PELTPSLARLVIQKGKSV 164 (354)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D-~~G~~l~LR--pD~T~~iaR~~a~~~~~~ 164 (354)
+++..+.+.+++.|.++||.+|.||.++.... |. ..+.|.+.. ..|+.+.|+ |+++ ..++++...
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~-----~~--~~~~f~~~~~~~g~~~~L~~Spql~--~~~~~~~~~--- 69 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITG-----GA--GARPFLVKYNALGLDYYLRISPQLF--KKRLMVGGL--- 69 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccCC-----cc--ccceEEeeecCCCCcEEeecCHHHH--HHHHHhcCC---
Confidence 56889999999999999999999999986521 22 235576632 258889999 8887 444454321
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
-|+|++|+|||+|..+.+|.+||+|+++|....
T Consensus 70 ---~~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~ 102 (269)
T cd00669 70 ---DRVFEINRNFRNEDLRARHQPEFTMMDLEMAFA 102 (269)
T ss_pred ---CcEEEEecceeCCCCCCCcccceeEEEEEEecC
Confidence 299999999999977888999999999998765
No 58
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=98.92 E-value=1.1e-08 Score=103.12 Aligned_cols=151 Identities=21% Similarity=0.344 Sum_probs=112.8
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHH--HHCCCeEecCCcccchHHhhhhhhhh--h---------ccc-----------
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVS--RLFGFEEVDFPVLESEALFIRKAGEE--I---------RDQ----------- 131 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf--~~~Gy~eI~tP~le~~~~~~~~~g~~--~---------~~~----------- 131 (354)
..|+.||.|.++.++++|.+.|++.| .+-+..+|++|++.+..+|.. +|+. . .+.
T Consensus 29 ~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~a-SGH~~~F~DpmV~CkkCk~ryRaD~LiikC 107 (539)
T PRK14894 29 LQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKY-SGHEETFNDPLVDCRDCKMRWRADHIQGVC 107 (539)
T ss_pred cccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeee-ccCCCCCCCceeECCCCCccccCccceeeC
Confidence 46999999999999999999999999 466778999999999999975 4653 0 001
Q ss_pred ----------------cEEe-ecCC---CCeEeeCCCCcHH----HHHHHHHhCCCCCCCeEEEEecceeecC-CCCCC-
Q 018556 132 ----------------LYCF-EDRG---NRRVALRPELTPS----LARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG- 185 (354)
Q Consensus 132 ----------------l~~f-~D~~---G~~l~LRpD~T~~----iaR~~a~~~~~~~~PlR~~y~g~VfR~e-~~~~G- 185 (354)
||+. +.+. .....|||+.... +.|.+..+. ..+|+-..++|++||+| .|+.|
T Consensus 108 P~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~--~klPFgiaQIGk~FRNEIsPr~~l 185 (539)
T PRK14894 108 PNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSA--RKLPFGIAQVGKAFRNEINPRNFL 185 (539)
T ss_pred CCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcC--CCCCeeEEeeeccccCccCCCCce
Confidence 1111 0111 2468999998876 456555543 47999999999999999 78877
Q ss_pred -cccceEEeeeeEeccCChhhH--HHHHHHHHHHHHHhcCCCCcEEE
Q 018556 186 -RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGITASDVGF 229 (354)
Q Consensus 186 -r~rEf~Q~g~Ei~g~~~~~aD--aEvi~l~~e~l~~lgl~~~~~~i 229 (354)
|.|||.|+.+|.|-.++...+ +--+......+.++|++...+.+
T Consensus 186 ~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~lrf 232 (539)
T PRK14894 186 FRVREFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIPRSRITI 232 (539)
T ss_pred eecccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCCHHHeee
Confidence 999999999999987653222 23455667888899997544443
No 59
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4.8e-09 Score=105.29 Aligned_cols=125 Identities=21% Similarity=0.292 Sum_probs=97.7
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHH--CCCeEecCCcccchHHhhhhhhhh--h-----------------------
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRL--FGFEEVDFPVLESEALFIRKAGEE--I----------------------- 128 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~--~Gy~eI~tP~le~~~~~~~~~g~~--~----------------------- 128 (354)
.+|+.||.|.++.++++|.+.|++.|-. -|..+|++|++.+.++|.. ||+. .
T Consensus 29 ~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kA-SGHvd~FsDplv~c~~c~~~yRADHLiEe~ 107 (558)
T COG0423 29 LAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKA-SGHVDKFSDPLVECKKCGERYRADHLIEEY 107 (558)
T ss_pred cccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhh-cCcccccccceeeccccchhhhhhHHHHHH
Confidence 4699999999999999999999999954 6899999999999999974 4542 0
Q ss_pred -cc------------------------------------ccEE-eecC-CCCeEeeCCCCcHH----HHHHHHHhCCCCC
Q 018556 129 -RD------------------------------------QLYC-FEDR-GNRRVALRPELTPS----LARLVIQKGKSVS 165 (354)
Q Consensus 129 -~~------------------------------------~l~~-f~D~-~G~~l~LRpD~T~~----iaR~~a~~~~~~~ 165 (354)
.. -||+ .+.+ +|+...|||+.... +-|.+.... ..
T Consensus 108 l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r--~k 185 (558)
T COG0423 108 LGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFAR--NK 185 (558)
T ss_pred hhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHhc--cC
Confidence 00 0111 0111 46789999997765 456554432 46
Q ss_pred CCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCCh
Q 018556 166 LPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAV 203 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~~ 203 (354)
+|+-+.++|+.||+| .|+.| |.|||.|+.+|.|-.+..
T Consensus 186 lPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~ 226 (558)
T COG0423 186 LPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEE 226 (558)
T ss_pred CCeEEEeechhhccccCcccceeehhhhhhhheeeEECCCc
Confidence 899999999999999 88888 999999999999987543
No 60
>PLN02320 seryl-tRNA synthetase
Probab=98.82 E-value=1.6e-08 Score=102.73 Aligned_cols=152 Identities=19% Similarity=0.262 Sum_probs=112.4
Q ss_pred CCCCcC-CChHHHHHH-HHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhh--cc-ccEEeecCCCCeEeeCCCCc
Q 018556 76 PKGTRD-FPPEDMRLR-NWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI--RD-QLYCFEDRGNRRVALRPELT 150 (354)
Q Consensus 76 p~G~~d-~~p~~~~~~-~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~--~~-~l~~f~D~~G~~l~LRpD~T 150 (354)
..|.+. |++.+...+ +.+.+.+.+...++||++|.||.+-..++|.. +|+.. .+ .+|++. |..++|-|..-
T Consensus 220 vsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~-sG~~p~~e~~~~y~ie---~ed~~Li~TaE 295 (502)
T PLN02320 220 VSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEK-CGFQPRGDNTQVYSID---GSDQCLIGTAE 295 (502)
T ss_pred cCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHh-cCCCcccccCceeEEC---CCceEEeeccc
Confidence 458888 588766644 79999999999999999999999999999975 56532 22 567653 46688866544
Q ss_pred HHHHHHHHHhC-CCCCCCeEEEEecceeecCCCC-----CC--cccceEEeeeeEeccCCh-hhH-HHHHHHHHHHHHHh
Q 018556 151 PSLARLVIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV-TAE-AELISSIITFFKRI 220 (354)
Q Consensus 151 ~~iaR~~a~~~-~~~~~PlR~~y~g~VfR~e~~~-----~G--r~rEf~Q~g~Ei~g~~~~-~aD-aEvi~l~~e~l~~l 220 (354)
.|++-++.... ...++|+|++..|+|||+|... .| |.++|.|.+..+|..++. ..+ .+++..+.++++.|
T Consensus 296 ~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~L 375 (502)
T PLN02320 296 IPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSL 375 (502)
T ss_pred ccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHc
Confidence 44443333222 2357899999999999999552 34 899999999999998643 222 56899999999999
Q ss_pred cCCCCcEEEEeCC
Q 018556 221 GITASDVGFRISS 233 (354)
Q Consensus 221 gl~~~~~~i~lgh 233 (354)
|++ ...+.+..
T Consensus 376 gLp--yrvv~l~t 386 (502)
T PLN02320 376 GLH--FKTLDMAT 386 (502)
T ss_pred CCC--eEEEEecC
Confidence 997 33444444
No 61
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.76 E-value=1.7e-07 Score=87.75 Aligned_cols=131 Identities=19% Similarity=0.274 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCcccch-HHhhhhh-h-hhh---ccccEEeecCC---CCeEeeCCCCcHHHHHHHH
Q 018556 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESE-ALFIRKA-G-EEI---RDQLYCFEDRG---NRRVALRPELTPSLARLVI 158 (354)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~-~~~~~~~-g-~~~---~~~l~~f~D~~---G~~l~LRpD~T~~iaR~~a 158 (354)
.-...+.+.++++|...||+++..|.++.. ..|.... . .+. ..+.|-+.++. .+..+||..+|+..+|++.
T Consensus 17 hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~ 96 (247)
T PF01409_consen 17 HPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLN 96 (247)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHH
Confidence 446778999999999999999999999763 3343210 1 111 34456665554 4789999999999999992
Q ss_pred HhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHh-cCC
Q 018556 159 QKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI-GIT 223 (354)
Q Consensus 159 ~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l-gl~ 223 (354)
...+.|+|++++|+|||++.....+..+|+|.+.=+++.+.. -.++..++.++++.| |..
T Consensus 97 ---~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~--f~~Lk~~l~~l~~~lfG~~ 157 (247)
T PF01409_consen 97 ---KHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVT--FEDLKGTLEELLKELFGID 157 (247)
T ss_dssp ---TTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE---HHHHHHHHHHHHHHHHTTT
T ss_pred ---HhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccc--hhHHHHHHHHHHHHHhhcc
Confidence 234679999999999999977777889999998888876432 345788888888888 764
No 62
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.66 E-value=3e-07 Score=88.33 Aligned_cols=142 Identities=20% Similarity=0.253 Sum_probs=99.3
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccch-HHhhhh-hhh--hhcc--ccEEeecCCCCeEe
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-ALFIRK-AGE--EIRD--QLYCFEDRGNRRVA 144 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~-~~~~~~-~g~--~~~~--~l~~f~D~~G~~l~ 144 (354)
++..+|.+. ..+....-...+.+.++++|...||.|+.+|.|+.. ..+... ... ...+ +.+.+. ...+
T Consensus 57 ~d~tlp~~~--~~~g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~----d~~v 130 (294)
T TIGR00468 57 YDVTLPGTK--IYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK----DRLL 130 (294)
T ss_pred CcccCCCCC--CCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec----CCcc
Confidence 455555432 222344556778889999999999999999999876 233321 011 0111 345554 3568
Q ss_pred eCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCC
Q 018556 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 145 LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~ 223 (354)
||+.+++...|.++.+.. .|+|+|.+|+|||.+.....+..||+|+++-+.+.. ..-.++..++..+++.+++.
T Consensus 131 LRtsl~p~ll~~l~~N~~---~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~--~~f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 131 LRTHTTAVQLRTMEENEK---PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKN--VSFTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred eecccHHHHHHHHHhcCC---CCceEEEecceEEcCCCCCccCChhhEEEEEEECCC--CCHHHHHHHHHHHHHHhCCC
Confidence 999999999999997653 799999999999987544344459999987777732 23466788888888888874
No 63
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.62 E-value=8.6e-07 Score=81.54 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccchH-Hhhhhhhhhhcc------ccEEeecCCCCeEeeCCCCcHHHHHHHHHhCC
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRKAGEEIRD------QLYCFEDRGNRRVALRPELTPSLARLVIQKGK 162 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~~-~~~~~~g~~~~~------~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~ 162 (354)
.+.+++.+++.+...||.|+.|++|...+ .+.. .+-.... ..+++.++- .-+||+.+++++.+.++.+
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~-~~~~~~~~~~~~~~~v~l~NP~--~~~LR~sLlp~LL~~l~~N-- 77 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDA-LNIPQDHPARDMQDTFYINDPA--RLLLRTHTSAVQARALAKL-- 77 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhh-cCCCCCCcccccCceEEECCCc--eEEEeccCcHHHHHHHHhc--
Confidence 45678889999999999999999997762 3321 1211000 235565554 6799999999999999887
Q ss_pred CCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhc
Q 018556 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIG 221 (354)
Q Consensus 163 ~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lg 221 (354)
..+.|+|++|+|||.++...++..|+.++++.+.|.. ....++..++..+++.+|
T Consensus 78 --~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~--~df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 78 --KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKG--LTFADLKGTLEEFAKELF 132 (218)
T ss_pred --CCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCC--CCHHHHHHHHHHHHHHhc
Confidence 4699999999999987533334459999999999953 235678888888888888
No 64
>PLN02734 glycyl-tRNA synthetase
Probab=98.62 E-value=1.3e-07 Score=98.99 Aligned_cols=125 Identities=20% Similarity=0.286 Sum_probs=96.4
Q ss_pred CCCCCcCCChHHHHHHHHHHHHHHHHHH-HCCCeEecCCcccchHHhhhhhhhh--------------------------
Q 018556 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE-------------------------- 127 (354)
Q Consensus 75 ~p~G~~d~~p~~~~~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~~~~~~~~g~~-------------------------- 127 (354)
=..|++||.|.++.++++|.+.|++.|- ..+.-+|++|++.+..+|.. ||+.
T Consensus 97 GvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kA-SGHvd~F~D~mv~~~~~~~~~RADhlie~~ 175 (684)
T PLN02734 97 GVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKA-SGHVDKFTDLMVKDEKTGTCFRADHLLKDF 175 (684)
T ss_pred CcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeee-cCCcccccceeeEcCCCCcEecchHHHHHH
Confidence 3679999999999999999999999994 55667999999999998874 3542
Q ss_pred hccc--------------------------------------------------------cEEe-ecC-CCCeEeeCCCC
Q 018556 128 IRDQ--------------------------------------------------------LYCF-EDR-GNRRVALRPEL 149 (354)
Q Consensus 128 ~~~~--------------------------------------------------------l~~f-~D~-~G~~l~LRpD~ 149 (354)
+... ||+. +.+ ++....|||+.
T Consensus 176 ~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~~~~YLRPET 255 (684)
T PLN02734 176 CEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLSVGYMRPET 255 (684)
T ss_pred HHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCCccceecccc
Confidence 0000 0100 011 13468999998
Q ss_pred cHH----HHHHHHHhCCCCCCCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCC
Q 018556 150 TPS----LARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPA 202 (354)
Q Consensus 150 T~~----iaR~~a~~~~~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~ 202 (354)
... |-|.+-.+. ..+|+-..+||+.||+| .|+.| |.|||+|+.+|.|-.+.
T Consensus 256 AQGiFvnFk~l~~~~~--~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv~P~ 313 (684)
T PLN02734 256 AQGIFVNFRDLYYYNG--GKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPE 313 (684)
T ss_pred cchheeeHHHHHHhcC--CCCCeeeeeccHhhhcccCcccceeeechhhhhhhheecCcc
Confidence 776 567665543 47999999999999999 88888 99999999999997654
No 65
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.52 E-value=8.2e-07 Score=84.77 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeec--CCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D--~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
+++.++...+++.|.+.||.||.||.+..... . |. .. |.... ..|..+.|+--.-...=+.++..
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~-~---g~---~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~g----- 68 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP-E---GA---RD-FLVPSRLHPGKFYALPQSPQLFKQLLMVSG----- 68 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC-C---CC---CC-ceeccccCCCceeecccCHHHHHHHHHhcC-----
Confidence 57889999999999999999999999975332 1 11 11 32211 12444445432211122223221
Q ss_pred CCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
--|+||+|+|||+++++.+|..||+|+++|+.+.+
T Consensus 69 -~~~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~~ 103 (280)
T cd00777 69 -FDRYFQIARCFRDEDLRADRQPEFTQIDIEMSFVD 103 (280)
T ss_pred -cCcEEEeccceeCCCCCCCccceeEEeEeeeccCC
Confidence 24999999999999988888889999999998763
No 66
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.49 E-value=3.6e-06 Score=81.83 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=101.5
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchH-Hhhhh-hh-hhh---ccccEEeecCCCCeEe
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRK-AG-EEI---RDQLYCFEDRGNRRVA 144 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~-~~~~~-~g-~~~---~~~l~~f~D~~G~~l~ 144 (354)
+++.+|. +.+......-...+.+.++++|...||+++..|.++... .|... .. .+. ..++|.+ ....+
T Consensus 93 ~d~t~p~--~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI----~~~~l 166 (339)
T PRK00488 93 IDVTLPG--RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI----DDGLL 166 (339)
T ss_pred ccccCCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE----cCCce
Confidence 4555553 334445556678899999999999999999999998633 34321 01 111 2345666 24489
Q ss_pred eCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHh
Q 018556 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (354)
Q Consensus 145 LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l 220 (354)
||..+|+..+|.+.. .+.|+|++.+|+|||++.....+..+|+|++.=+++.+.. -+++..++..+++.+
T Consensus 167 LRThTSp~qir~L~~----~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vt--f~dLK~~L~~fl~~~ 236 (339)
T PRK00488 167 LRTHTSPVQIRTMEK----QKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNIS--FADLKGTLEDFLKAF 236 (339)
T ss_pred eeccCcHHHHHHHHh----cCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCC--HHHHHHHHHHHHHHH
Confidence 999999999999876 2579999999999999876777899999999888887543 355677777777776
No 67
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.42 E-value=1.7e-06 Score=84.30 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
.-.+++.++...+++.|.++||.+|+||+++.... +. ..+.|++ |--|+.+.|+--.....=+.++.
T Consensus 22 ~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~-----e~--~~~~f~~-~~~~~~~yL~~Spql~lk~l~~~----- 88 (322)
T cd00776 22 AIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT-----EG--GAELFKV-SYFGKPAYLAQSPQLYKEMLIAA----- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC-----Cc--cCCcccc-ccCCCcceecCCHHHHHHHHHHh-----
Confidence 45678999999999999999999999999987431 11 2233443 22456666764444444444433
Q ss_pred CCCeEEEEecceeecCCCCCC-cccceEEeeeeEeccC
Q 018556 165 SLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|+|||+|....+ +..||+|+++|..+.+
T Consensus 89 --~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~ 124 (322)
T cd00776 89 --LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIE 124 (322)
T ss_pred --hhhhEEeccccccCCCCcCCCcceeeccceeeeccC
Confidence 2389999999999975543 6799999999999874
No 68
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.38 E-value=5.5e-06 Score=83.94 Aligned_cols=161 Identities=19% Similarity=0.300 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEe-cCCcccchH-----Hhhhhhhhh--hccccEEeecC------------------
Q 018556 85 EDMRLRNWLFHNFQEVSRLFGFEEV-DFPVLESEA-----LFIRKAGEE--IRDQLYCFEDR------------------ 138 (354)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI-~tP~le~~~-----~~~~~~g~~--~~~~l~~f~D~------------------ 138 (354)
....-...+.+.++++|...||+++ ..|.+|..- ++... .+. -.++.|-+.++
T Consensus 218 G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~Pq-dHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~H 296 (492)
T PLN02853 218 GHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQ-QHPARDSHDTFFLKAPATTRQLPEDYVERVKTVH 296 (492)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCC-CCCCCCccceEEEcCccccccCcHHHHHHHHHHH
Confidence 3444577889999999999999999 567777632 22211 110 12345555421
Q ss_pred -C----------------CCeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 139 -G----------------NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 139 -~----------------G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
. .+.++||...|+--+|++.........|.|++.+|+|||+|.....+.-||+|+..=+++.+
T Consensus 297 e~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~ 376 (492)
T PLN02853 297 ESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRG 376 (492)
T ss_pred hcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCC
Confidence 0 15799999999999999996432224699999999999999888889999999988888765
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCC------------CcEE-----------EEeCCHHHHH-HHHHHCCCCh
Q 018556 202 AVTAEAELISSIITFFKRIGITA------------SDVG-----------FRISSRKVLQ-EVLRCHSIPE 248 (354)
Q Consensus 202 ~~~aDaEvi~l~~e~l~~lgl~~------------~~~~-----------i~lgh~~il~-~il~~~gl~~ 248 (354)
- .-+.++.++.++++++|... ..++ |+|+..++++ .+|+.+|+|+
T Consensus 377 ~--t~~~L~g~l~~f~~~lg~~~~RfrP~yfPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi~~ 445 (492)
T PLN02853 377 L--TLGDLIGVLEDFFSRLGMTKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEMLLPMGLPE 445 (492)
T ss_pred C--CHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCeEEEEEEecCCCCEEEEecCcCcCHHHHHhCCCCC
Confidence 3 33458899999999987531 0111 6677777776 6778888754
No 69
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=4.2e-06 Score=83.52 Aligned_cols=145 Identities=21% Similarity=0.302 Sum_probs=114.1
Q ss_pred CCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHH
Q 018556 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (354)
Q Consensus 75 ~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~ 152 (354)
...++..+.+..++..+.+.+.+.+...++||.++.+|.+-..+.... .|.. ..+++|++.|. .+.|=|....|
T Consensus 162 sGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~g-tgqlpkf~e~~y~v~~~---~~~LipTaEvp 237 (429)
T COG0172 162 SGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFG-TGQLPKFEEDLYKVEDP---DLYLIPTAEVP 237 (429)
T ss_pred CCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhc-cCCCCCCcccceEecCC---CEEEEecchhh
Confidence 446677788899999999999999999999999999999999887653 3432 46789998765 79999999999
Q ss_pred HHHHHHHhCCC-CCCCeEEEEecceeecCCCC-----CC--cccceEEeeeeEeccCCh-hh-HHHHHHHHHHHHHHhcC
Q 018556 153 LARLVIQKGKS-VSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV-TA-EAELISSIITFFKRIGI 222 (354)
Q Consensus 153 iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~~~-----~G--r~rEf~Q~g~Ei~g~~~~-~a-DaEvi~l~~e~l~~lgl 222 (354)
++-+++..... .++|+|++-.++|||.|... +| |..||.-...-.|..+.. +. --|++..+.++++.|+|
T Consensus 238 l~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeL 317 (429)
T COG0172 238 LTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELEL 317 (429)
T ss_pred hHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 99999876654 56899999999999998433 44 555666655555554322 22 25689999999999999
Q ss_pred C
Q 018556 223 T 223 (354)
Q Consensus 223 ~ 223 (354)
+
T Consensus 318 P 318 (429)
T COG0172 318 P 318 (429)
T ss_pred C
Confidence 7
No 70
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=98.25 E-value=3.2e-06 Score=81.69 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeec----CCCCeEeeCCCCcHHHHHHHHHhCCC
Q 018556 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED----RGNRRVALRPELTPSLARLVIQKGKS 163 (354)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D----~~G~~l~LRpD~T~~iaR~~a~~~~~ 163 (354)
+++.++.+.+++.|.++||.+|+||+++.... .+...+.|++.- ..++...|+----...=|.++..
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~------~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g--- 72 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPV------TDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAG--- 72 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCC------CCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhcc---
Confidence 57889999999999999999999999987531 111233454321 12334444433222333344432
Q ss_pred CCCCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
--|+|++|+|||+|....-|.-||+|+++|..+.
T Consensus 73 ---~~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~~ 106 (304)
T TIGR00462 73 ---SGPIFQICKVFRNGERGRRHNPEFTMLEWYRPGF 106 (304)
T ss_pred ---CCCEEEEcCceeCCCCCCCcccHHHhHHHHHHcC
Confidence 2499999999999977555788999999987764
No 71
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.6e-05 Score=75.64 Aligned_cols=142 Identities=22% Similarity=0.341 Sum_probs=105.2
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchH-----Hhhhhhhhh--hccccEEeecCCCCeE
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-----LFIRKAGEE--IRDQLYCFEDRGNRRV 143 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~-----~~~~~~g~~--~~~~l~~f~D~~G~~l 143 (354)
+++.+|.- ...+....-...+.+.++++|...||+++..|.+|..- ++... .+. -.++.|-+.+ +.+.+
T Consensus 96 ~dv~lp~~--~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~-dHPARdmqDTFy~~~-~~~~~ 171 (335)
T COG0016 96 IDVTLPGR--RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQ-DHPARDMQDTFYLKD-DREKL 171 (335)
T ss_pred CCcCCCCc--cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCC-CCCcccccceEEEcC-CCCce
Confidence 44444432 55556677788999999999999999999999888731 22111 111 1345666654 33378
Q ss_pred eeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhc
Q 018556 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIG 221 (354)
Q Consensus 144 ~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lg 221 (354)
+||-..|+--+|++..+.. .|+|++..|+|||++.....+.-+|+|+..=+++.+-.. +.+..++.++++.++
T Consensus 172 lLRTHTs~vq~R~l~~~~~---~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~--~~Lkg~L~~f~~~~f 244 (335)
T COG0016 172 LLRTHTSPVQARTLAENAK---IPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISF--ADLKGTLEEFAKKFF 244 (335)
T ss_pred eecccCcHhhHHHHHhCCC---CCceEecccceecCCCCCcccchheeeeEEEEEeCCccH--HHHHHHHHHHHHHhc
Confidence 9999999999999998743 399999999999999778889999999988777765333 447888888888875
No 72
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=98.12 E-value=3.2e-05 Score=75.59 Aligned_cols=104 Identities=21% Similarity=0.267 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee----cCCCCeEeeCCCCcHHHHHHHHHhC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE----DRGNRRVALRPELTPSLARLVIQKG 161 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~----D~~G~~l~LRpD~T~~iaR~~a~~~ 161 (354)
-.+++..+.+.+++.|.+.||.||.||.+.....= | ..+.|.+. +--|+.+-|+.-.-...=++++..
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~----~---~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g- 92 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCE----G---GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG- 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSS----S---SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeeccccC----c---cccccccccchhhhcccceecCcChHHHHhhhcccc-
Confidence 45788899999999999999999999998775310 1 34567665 134566777766555555555432
Q ss_pred CCCCCCeEEEEecceeecCCCCCC-cccceEEeeeeEeccCC
Q 018556 162 KSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPA 202 (354)
Q Consensus 162 ~~~~~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei~g~~~ 202 (354)
--|+|++|+|||+|..... +.-||+|+++|.-+.+.
T Consensus 93 -----~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~ 129 (335)
T PF00152_consen 93 -----LERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADY 129 (335)
T ss_dssp -----HSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSH
T ss_pred -----chhhhheecceeccCcccccchhhhhhhhhccccCcH
Confidence 2399999999999977334 56799999999987653
No 73
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=98.10 E-value=2.5e-05 Score=81.34 Aligned_cols=102 Identities=24% Similarity=0.398 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHH--HHHHhCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLAR--LVIQKGKS 163 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR--~~a~~~~~ 163 (354)
-.+++.++...+++.|...||.||+||++..... . |. .+-++...-..|..++|+- .+++.. .++. .
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~-e---Ga--r~f~vp~~~~~~~~y~L~q--SpQlykq~l~v~-G-- 205 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP-E---GA--RDYLVPSRVHKGEFYALPQ--SPQLFKQLLMVS-G-- 205 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC-C---CC--cceeeeeecCCCceeecCC--CHHHHHHHHHhc-c--
Confidence 4578899999999999999999999999975321 1 11 1101111112566666662 233322 2221 1
Q ss_pred CCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|+|||+|..+..|.-||+|+++|.-..+
T Consensus 206 ---~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d 240 (583)
T TIGR00459 206 ---VDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMT 240 (583)
T ss_pred ---cCcEEEEcceeeCCCCCCCCCcccCcceeeecCCC
Confidence 34999999999999887788899999999988764
No 74
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.07 E-value=5.1e-05 Score=74.15 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee-cCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~-D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-.+++..+...+++.|.+.||.||.||.+.... .|. ..+.|... +..|+...|+----...=++++..
T Consensus 7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~-----~~~--~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g---- 75 (329)
T cd00775 7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIA-----GGA--AARPFITHHNALDMDLYLRIAPELYLKRLIVGG---- 75 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCC-----CCc--cceeEEeccCCCCcceeeccCHHHHHHHHHhcC----
Confidence 357888999999999999999999999996542 111 12334332 233555566532222222333321
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
--|+|++|+|||.|....-|.-||+|+++|..+.
T Consensus 76 --~~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~ 109 (329)
T cd00775 76 --FERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYA 109 (329)
T ss_pred --CCcEEEEeccccCCCCCCCCCCceEEEEEeeecC
Confidence 3499999999999976655788999999998775
No 75
>PRK06462 asparagine synthetase A; Reviewed
Probab=98.02 E-value=3e-05 Score=75.88 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCcccchH-HhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCC
Q 018556 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS 163 (354)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~-~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~ 163 (354)
.-.+++..+...+++.|.+.||.||.||.+.... -... .|..-.-..+.+ |-.|+.+.|+.-.-.- -|+++..
T Consensus 28 ~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~-~g~~~~~~~~~~-~~~~~~~yL~~Spql~-k~ll~~g--- 101 (335)
T PRK06462 28 KVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMG-LGSDLPVKQISI-DFYGVEYYLADSMILH-KQLALRM--- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCC-ccccCCcccccc-ccCCCceeeccCHHHH-HHHHHhh---
Confidence 3467899999999999999999999999987641 1000 111100112222 2236777777654443 5555533
Q ss_pred CCCCeEEEEecceeecCCCCC---CcccceEEeeeeEecc
Q 018556 164 VSLPLKWFAVGQCWRYERMTR---GRRREHYQWNMDIIGV 200 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e~~~~---Gr~rEf~Q~g~Ei~g~ 200 (354)
--|+|++|+|||+|..+. -+.-||+++++|..+.
T Consensus 102 ---~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~ 138 (335)
T PRK06462 102 ---LGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGA 138 (335)
T ss_pred ---cCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcC
Confidence 239999999999997765 4788999999998874
No 76
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.96 E-value=5.6e-05 Score=79.12 Aligned_cols=100 Identities=24% Similarity=0.452 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeec--CCCCeEeeCCCCcHHHHH--HHHHhC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLAR--LVIQKG 161 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D--~~G~~l~LRpD~T~~iaR--~~a~~~ 161 (354)
-.+++..+...+++.|...||.||+||.+..... . |. .+ |..-. ..|..+.|+- .+++.. .++. .
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~-e---ga--~~--f~v~~~~~~~~~~~L~q--Spql~kq~l~~~-g 208 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP-E---GA--RD--YLVPSRVHPGKFYALPQ--SPQLFKQLLMVA-G 208 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC-C---CC--cc--ceecccccCCceeecCC--CHHHHHHHHHhc-c
Confidence 4568899999999999999999999999976421 1 11 11 22211 2466666652 223322 2221 1
Q ss_pred CCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 162 KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 162 ~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|+|||+|.....|.-||+|+++|.-+.+
T Consensus 209 -----~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~ 243 (588)
T PRK00476 209 -----FDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVT 243 (588)
T ss_pred -----cCceEEEeceeecCCCCCCcCcccccceeeecCCC
Confidence 34999999999999776666559999999998874
No 77
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=97.94 E-value=7.6e-05 Score=75.43 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
-.+++..+...+++.|.+.||.||+||.+..... . | ..+.|.+. --|+.+.|+--.-...=+.++.-
T Consensus 132 ~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~-e---g---~~~~f~v~-~~~~~~yL~~Spql~~q~li~~g----- 198 (428)
T TIGR00458 132 IFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT-E---G---GTELFPIT-YFEREAFLGQSPQLYKQQLMAAG----- 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC-C---C---CcceeeeE-ecCCcEEECcCHHHHHHHHHhcc-----
Confidence 4578889999999999999999999999864221 0 1 22345432 23455556643333323333321
Q ss_pred CCeEEEEecceeecCCCCCC-cccceEEeeeeEeccC
Q 018556 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|++||+|..... +.-||+|+++|..+.+
T Consensus 199 -~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 234 (428)
T TIGR00458 199 -FERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFED 234 (428)
T ss_pred -cCcEEEEecccccCCCCCccchheeeEeeeeeccCC
Confidence 3499999999999976644 5679999999988763
No 78
>PLN02903 aminoacyl-tRNA ligase
Probab=97.92 E-value=7.8e-05 Score=78.37 Aligned_cols=101 Identities=23% Similarity=0.424 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCeEecCCcccchHHhhhhhhhhhccccEEe-ecCCCCeEeeCCCCcHHHHH--HHHHhC
Q 018556 86 DMRLRNWLFHNFQEVSRL-FGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLAR--LVIQKG 161 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~-~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f-~D~~G~~l~LRpD~T~~iaR--~~a~~~ 161 (354)
-.+++.++...+++.|.. .||.||+||.+..... + |. .+.+.. ....|..++|+- .+++.. .++. .
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~-e---Ga---rdf~v~~~~~~g~~y~L~q--SPQlykQ~Lm~~-G 271 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP-E---GA---RDYLVPSRVQPGTFYALPQ--SPQLFKQMLMVS-G 271 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC-C---CC---cccEEeeecCCCcccccCC--CHHHHHHHHHhc-c
Confidence 457888999999999996 9999999999875421 1 11 111111 112366666663 222222 2222 1
Q ss_pred CCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 162 KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 162 ~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|+|||+|..+..|.-||+|+++|.-..+
T Consensus 272 -----~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d 306 (652)
T PLN02903 272 -----FDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 306 (652)
T ss_pred -----CCcEEEEehhhccCCCCCCcccceeeeeeeecCCC
Confidence 34999999999999877777799999999988764
No 79
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.00018 Score=67.77 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccE--EeecC---CCCeEeeCCCCcHHHHHHHHHh
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLY--CFEDR---GNRRVALRPELTPSLARLVIQK 160 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~--~f~D~---~G~~l~LRpD~T~~iaR~~a~~ 160 (354)
....+.++...+++.|..+||-||+||.+...- +.+..=..| .++.+ ++..+-|.+---..+-|.++..
T Consensus 15 ~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~------vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag 88 (322)
T COG2269 15 NLLKRAAIIAAIRRFFAERGVLEVETPALSVAP------VTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAG 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEecchHhhcCC------CCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHcc
Confidence 467788999999999999999999999986542 221111112 23333 3567777776666788888764
Q ss_pred CCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHH
Q 018556 161 GKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEV 240 (354)
Q Consensus 161 ~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~i 240 (354)
.-++|++|+|||+++.+.-+.-||++..-+-+|.+-..--.|+=.+...+++.-+.. ...+-+++
T Consensus 89 ------~~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~~E---------~ls~~eaF 153 (322)
T COG2269 89 ------SGPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVEAE---------RLSYQEAF 153 (322)
T ss_pred ------CCcchhhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCCcc---------eeeHHHHH
Confidence 337999999999987554467799999998888753322223333333333333321 11344566
Q ss_pred HHHCCCChh--hHhHHHHHHHHh
Q 018556 241 LRCHSIPEH--LFGKVCIIIDKI 261 (354)
Q Consensus 241 l~~~gl~~~--~~~~v~~~ld~~ 261 (354)
++.+|++.- .+..+.+.+++.
T Consensus 154 ~r~~gid~l~~~~~~L~~~~~~~ 176 (322)
T COG2269 154 LRYLGIDPLSADKTELREAAAKL 176 (322)
T ss_pred HHHhCCCcccccHHHHHHHHHhc
Confidence 677776542 244455555544
No 80
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.89 E-value=0.00014 Score=74.72 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEe-ecCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f-~D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-.+++..+...+++.|...||.||+||++.... .|. ..+.|.. .+--+....|+--.-.-.=|+++.-
T Consensus 171 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~Ga--~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g---- 239 (491)
T PRK00484 171 TFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GGA--AARPFITHHNALDIDLYLRIAPELYLKRLIVGG---- 239 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CCc--cceeeeeccccCCCceEeccCHHHHHHHHHhcc----
Confidence 456888999999999999999999999996431 121 1233432 1223444556532222223333322
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
--|+|++|+|||+|....-|.-||+|+++|.-..
T Consensus 240 --~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~ 273 (491)
T PRK00484 240 --FERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYA 273 (491)
T ss_pred --CCcEEEEecceecCCCCCCcCCceEEEEEEEecC
Confidence 3499999999999977666788999999998765
No 81
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.89 E-value=8.8e-05 Score=75.45 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee--------cCCCCeEeeCCCCcHHHHHHH
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE--------DRGNRRVALRPELTPSLARLV 157 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~--------D~~G~~l~LRpD~T~~iaR~~ 157 (354)
-.+++..+...+++.|..+||.||+||.+..... . | ..+.|.+. +--|..+.|+--...-. +++
T Consensus 132 ~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~--e--g---~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~l 203 (450)
T PRK03932 132 VMRIRNTLAQAIHEFFNENGFVWVDTPIITASDC--E--G---AGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EAY 203 (450)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCceeccCC--C--C---CCCceEeecccccccccccCCCcccccCHHHHH-HHH
Confidence 4678889999999999999999999999976421 0 1 23456552 12355566655443333 444
Q ss_pred HHhCCCCCCCeEEEEecceeecCCCCCC-cccceEEeeeeEeccCChhhHHHHHHHHHHHHH
Q 018556 158 IQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPAVTAEAELISSIITFFK 218 (354)
Q Consensus 158 a~~~~~~~~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~ 218 (354)
+. . --|+|++|+|||+|..... +.-||+|+++|..+.+- .|++.++.+.+.
T Consensus 204 ~~-g-----~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~----~~~m~~~e~li~ 255 (450)
T PRK03932 204 AM-A-----LGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADL----EDNMDLAEEMLK 255 (450)
T ss_pred Hh-c-----cCCeEEeeeccccCCCCCccccccccccceEEeccCH----HHHHHHHHHHHH
Confidence 42 2 2499999999999975333 56799999999876531 334444444443
No 82
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.83 E-value=0.00012 Score=77.80 Aligned_cols=104 Identities=21% Similarity=0.356 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHH-HHHhCCC
Q 018556 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARL-VIQKGKS 163 (354)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~-~a~~~~~ 163 (354)
.-.+++..+...+++.|...||.||+||.+..... . |. .+-++...-..|..++|+- .+++..- +....
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~---e-GA--r~~~~p~~~~~~~~y~L~q--SPQlykq~lm~~G-- 223 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP---E-GA--RDYLVPSRIHPKEFYALPQ--SPQLFKQLLMIAG-- 223 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC---C-CC--cceEEeeecCCCcceecCC--CHHHHHHHHHhcc--
Confidence 34678899999999999999999999999975321 1 11 1111111112455555652 2232222 11111
Q ss_pred CCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|+|||+|..+..|.-||+|+++|.-+.+
T Consensus 224 ---~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d 258 (706)
T PRK12820 224 ---FERYFQLARCFRDEDLRPNRQPEFTQLDIEASFID 258 (706)
T ss_pred ---CCcEEEEechhcCCCCCCCcCccccccceeeccCC
Confidence 34999999999999776667789999999988763
No 83
>PLN02850 aspartate-tRNA ligase
Probab=97.82 E-value=9.9e-05 Score=76.39 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
-.+++..+...+++.|.+.||.||.||.+..... . | ..+.|++ +-.|+...|+--...-.=+.++..
T Consensus 224 ifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~-e---g---ga~~F~v-~yf~~~~~L~qSpql~kq~li~~g----- 290 (530)
T PLN02850 224 IFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS-E---G---GSAVFRL-DYKGQPACLAQSPQLHKQMAICGD----- 290 (530)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC-c---c---ccceeee-ccCCcceecCCCHHHHHHHHHHhc-----
Confidence 3578889999999999999999999999844321 1 1 2235655 335677777644333333333322
Q ss_pred CCeEEEEecceeecCCCCCC-cccceEEeeee-Eecc
Q 018556 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMD-IIGV 200 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~E-i~g~ 200 (354)
--|+|++|+|||+|..... +.-||+|+++| -|+.
T Consensus 291 -~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~ 326 (530)
T PLN02850 291 -FRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKE 326 (530)
T ss_pred -CCceEEEecccccCCCCCCccchhhccchhhhhhhc
Confidence 2399999999999975333 56799999999 4553
No 84
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.81 E-value=0.00014 Score=74.84 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEe-ecCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f-~D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-.+++..+...+++.|...||.||+||++.... .|. ...-|.. .+.-+..+.||--.-...=|+++.-
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~-----gGa--~a~pF~t~~~~~~~~~yL~~SpELylKrlivgG---- 251 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GGA--SARPFITHHNALDLDMYLRIAPELYLKRLVVGG---- 251 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecC-----CCC--cccceecccccCCcceeeecCHHHHHHHHHhcc----
Confidence 356888999999999999999999999996531 121 1112211 1223444556544333444555432
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
--|+|++|+|||+|....-|.-||+|+++|.-..
T Consensus 252 --~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~ 285 (505)
T PRK12445 252 --FERVFEINRNFRNEGISVRHNPEFTMMELYMAYA 285 (505)
T ss_pred --CCcEEEEehhccCCCCCCCcCcccceeeeeeecC
Confidence 2499999999999976555788999999999875
No 85
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.81 E-value=0.0002 Score=72.69 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
.-.+++..+...+++.|.+.||.||+||.+..... . | ..+.|.+. --|..+.|+--.-.-.=++++ ..
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---e-g---~~~~f~~~-~~~~~~~L~~Spql~~q~l~~-~g--- 201 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT---E-G---GAELFPID-YFEKEAYLAQSPQLYKQMMVG-AG--- 201 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC---C-C---CcceEeEE-ecCCceEecCCHHHHHHHHHh-cC---
Confidence 45678899999999999999999999999853211 0 1 22345542 245666676544443223232 21
Q ss_pred CCCeEEEEecceeecCCCCCC-cccceEEeeeeEeccC
Q 018556 165 SLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|++||+|..... +.-||+|+++|..+.+
T Consensus 202 --~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 237 (437)
T PRK05159 202 --FERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFID 237 (437)
T ss_pred --CCcEEEEeceeeCCCCCCcccchhhheeeeeeeecc
Confidence 3499999999999976644 4679999999987654
No 86
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=97.77 E-value=0.00032 Score=73.17 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHH-hhhhhhhhhccccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~-~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
....+++.+.+++.+...||.|+.|.+|...+. +.. .+-......+++..+ +...-+||+-+++++.+.++.+. +.
T Consensus 358 ~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~-~~ 435 (552)
T PRK09616 358 LHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-MNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK-HR 435 (552)
T ss_pred CChHHHHHHHHHHHHHhCCcceeccceEechHHHHHH-hCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhcc-CC
Confidence 344566788899999999999999999987754 432 221111135777776 56678999999999999999887 56
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcC
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl 222 (354)
..|+|+|.+|+||+.+..+...++|..+.++-+.|.. ..-.++-.++..++..+|+
T Consensus 436 ~~~~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~--~df~dlKg~ve~ll~~lgi 491 (552)
T PRK09616 436 EYPQKIFEIGDVVLIDESTETGTRTERKLAAAIAHSE--ASFTEIKSVVQALLRELGI 491 (552)
T ss_pred CCCeeEEEeeEEEecCCccccCcchhhEEEEEEECCC--CCHHHHHHHHHHHHHHcCC
Confidence 7899999999999875322224578999988888862 1234566677777788886
No 87
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.74 E-value=0.00028 Score=74.29 Aligned_cols=102 Identities=17% Similarity=0.250 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeec-CCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D-~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-.+++..+...+++.|...||.||+||++.... .|. ....|.... -.+..+.||----...=|+++.-
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~-----~ga--~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG---- 300 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVA-----SGA--NAKSFVTHHNANAMDLFLRVAPELHLKQCIVGG---- 300 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC-----CCC--CccceEeecccCCCCEEecCChHHHHHHHhhcc----
Confidence 457888999999999999999999999995421 111 223453321 12344445533333333444322
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
--|+|++|++||+|....-|.-||+|+++|..+.
T Consensus 301 --~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~~ 334 (659)
T PTZ00385 301 --MERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYH 334 (659)
T ss_pred --cCCEEEEeceecCCCCCCCccccccceeeeeecC
Confidence 3499999999999977666788999999997765
No 88
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.73 E-value=0.00026 Score=73.93 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeec---CCCCeEeeCCCCcHHHHHHHHHhCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED---RGNRRVALRPELTPSLARLVIQKGK 162 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D---~~G~~l~LRpD~T~~iaR~~a~~~~ 162 (354)
-.+++..+...+++.|...||.||+||++.... .|. .+..|.. .-+..+.||----...=|+++.-
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GGA----~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG-- 320 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GGA----NARPFITHHNDLDLDLYLRIATELPLKMLIVGG-- 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Ccc----cceeEEecccCCCcceEEeecHHHHHHHHHHhC--
Confidence 356888999999999999999999999997642 122 2222222 12445566633333445555532
Q ss_pred CCCCCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 163 ~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
--|+|++|++||+|....-+.-||+|+.+|.-..
T Consensus 321 ----~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~ 354 (585)
T PTZ00417 321 ----IDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYA 354 (585)
T ss_pred ----CCCEEEEcccccCCCCCCCccceeeeeeeeeecC
Confidence 2399999999999976666788999999998764
No 89
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00031 Score=71.59 Aligned_cols=103 Identities=21% Similarity=0.333 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
..+.|.++...+++.+-.+||.+|+||++.... .+-.++=++-=.-+.|+-+||+= .+++-..+..-.
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkST------PEGARDfLVPSRv~~G~FYALPQ--SPQlfKQLLMvs---- 207 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKST------PEGARDFLVPSRVHPGKFYALPQ--SPQLFKQLLMVA---- 207 (585)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEeecCccccCC------CccccccccccccCCCceeecCC--CHHHHHHHHHHh----
Confidence 456788899999999999999999999986532 11011112211124688888863 244443333221
Q ss_pred CCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
---|+|||.+|||+|..+.-|.=||+|.|+|+==.
T Consensus 208 GfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~ 242 (585)
T COG0173 208 GFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFV 242 (585)
T ss_pred cccceeeeeeeecccccccccCCcceeEeEEeecC
Confidence 14499999999999987778889999999998544
No 90
>PLN02502 lysyl-tRNA synthetase
Probab=97.71 E-value=0.00025 Score=73.68 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee-cCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~-D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-.+++..|...+++.|...||.||+||++.... .|. ....|... +--+..+.||----...=|+++.-
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gGA--~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g---- 296 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GGA--AARPFVTHHNDLNMDLYLRIATELHLKRLVVGG---- 296 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CCc--cccceeeecccCCcceeeecCHHHHHHHHHHhc----
Confidence 346888999999999999999999999996532 121 12223321 223455666543333334445432
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
--|+|++|++||+|....-|.-||+|+++|.-..
T Consensus 297 --~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~ 330 (553)
T PLN02502 297 --FERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYA 330 (553)
T ss_pred --cCCEEEEcCeeeCCCCCCccccceeehhhhhhcC
Confidence 2499999999999976666788999999998765
No 91
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.64 E-value=0.00027 Score=72.68 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee-cCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~-D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-.+++..|...+++.|...||.||+||++.... .|. ..+.|... +.-|..+.||----...=|+++.-
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gga--~a~pF~t~~~~~~~~~yLriSpELylKrlivgG---- 239 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GGA--NARPFITHHNALDMDLYLRIAPELYLKRLIVGG---- 239 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CCc--cceeEEeecccCCCceEEecCHHHHHHHHHhCC----
Confidence 346888999999999999999999999996532 121 22334332 113445556544333334554432
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
--|+|++|++||+|....-|.-||+++++|.-..
T Consensus 240 --~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~ 273 (496)
T TIGR00499 240 --FEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYA 273 (496)
T ss_pred --CCceEEEecceecCCCCCcccchhheeehhhhcC
Confidence 2499999999999977666788999999997765
No 92
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00035 Score=69.23 Aligned_cols=145 Identities=18% Similarity=0.316 Sum_probs=107.6
Q ss_pred CCCCCcCC--ChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhh--hhccccEEeecCCCCeEeeCCCCc
Q 018556 75 PPKGTRDF--PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELT 150 (354)
Q Consensus 75 ~p~G~~d~--~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~--~~~~~l~~f~D~~G~~l~LRpD~T 150 (354)
-..|-+-| ....+..-..+.+...+...+.||.++.+|.+...++... .|- ...++.|..+|.. ...+|-...-
T Consensus 171 ~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~-cg~~~~~d~~~~y~ld~~-~~~~LiaTaE 248 (455)
T KOG2509|consen 171 KVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQK-CGQLPRFDEEQYYVLDGG-DEKYLIATAE 248 (455)
T ss_pred hcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHH-hccCcCCCcceEEeecCC-ccceeEeecc
Confidence 35666664 3566778888889999999999999999999999998864 342 2456788888754 5667777777
Q ss_pred HHHHHHHHHhCCC-CCCCeEEEEecceeecCCCC-----CC--cccceEEeeeeEeccCChh----hHHHHHHHHHHHHH
Q 018556 151 PSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT----AEAELISSIITFFK 218 (354)
Q Consensus 151 ~~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~~~-----~G--r~rEf~Q~g~Ei~g~~~~~----aDaEvi~l~~e~l~ 218 (354)
.|+|-+.+..... .++|+|+.-.+.|||.|... .| |..||. -+|.|...+++ .--|+|....++++
T Consensus 249 ~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~--KVE~Fvit~Pe~S~~~~eEmi~~~eef~q 326 (455)
T KOG2509|consen 249 QPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFE--KVEQFVITGPEDSWEMLEEMINNQEEFYQ 326 (455)
T ss_pred chhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeee--eeEEEEecCcchhHHHHHHHHHHHHHHHH
Confidence 8999888766543 48999999999999998422 33 444555 46666654443 22578999999999
Q ss_pred HhcCC
Q 018556 219 RIGIT 223 (354)
Q Consensus 219 ~lgl~ 223 (354)
+|||+
T Consensus 327 sLgip 331 (455)
T KOG2509|consen 327 SLGLP 331 (455)
T ss_pred HhCCc
Confidence 99997
No 93
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.61 E-value=0.00029 Score=73.20 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
-.+++..+...+++.|.+.||.||+||.+..... . | ..+.|++ +--|+...|+--.-.- -++++...
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~--e--g---ga~~F~v-~yf~~~~~L~qSpql~-kq~li~~g---- 278 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS--E--G---GANVFKL-EYFNRFAYLAQSPQLY-KQMVLQGD---- 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC--C--c---ccccccc-ccCCCCeecCCCHHHH-HHHHHhcC----
Confidence 4578889999999999999999999999866431 1 1 2234543 2235556665433222 33333221
Q ss_pred CCeEEEEecceeecCCCCC-CcccceEEeeeeE-ecc
Q 018556 166 LPLKWFAVGQCWRYERMTR-GRRREHYQWNMDI-IGV 200 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~-Gr~rEf~Q~g~Ei-~g~ 200 (354)
--|+|++|+|||.|.... -+.-||+|+++|. |+.
T Consensus 279 -~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~ 314 (550)
T PTZ00401 279 -VPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINE 314 (550)
T ss_pred -CCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcC
Confidence 349999999999997643 3567999999985 443
No 94
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.61 E-value=0.00038 Score=70.92 Aligned_cols=102 Identities=19% Similarity=0.174 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeec--------CCCCeEeeCCCCcHHHHHHH
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--------RGNRRVALRPELTPSLARLV 157 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D--------~~G~~l~LRpD~T~~iaR~~ 157 (354)
-.+++..|...+++.|...||.||.||.+..... . | ..+.|.+.. --|+...|+--... ..+++
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~--e--g---~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql-~lq~l 206 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDC--E--G---AGELFRVSTDGIDFSQDFFGKEAYLTVSGQL-YLETY 206 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC--C--C---CCCceEecccccccchhccCCccccccCHHH-HHHHH
Confidence 3578899999999999999999999999976431 1 1 223454431 12444444433211 12222
Q ss_pred HHhCCCCCCCeEEEEecceeecCCCCCC-cccceEEeeeeEeccC
Q 018556 158 IQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (354)
Q Consensus 158 a~~~~~~~~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei~g~~ 201 (354)
+. . --|+|++|+|||+|..... +.-||+|+++|.-+.+
T Consensus 207 ~~-g-----~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~ 245 (453)
T TIGR00457 207 AL-A-----LSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFAN 245 (453)
T ss_pred hh-c-----ccCceEeeeccccCCCCCCcCcchhccceeeeecCC
Confidence 21 1 2499999999999976543 5679999999987653
No 95
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.51 E-value=0.00049 Score=69.27 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=79.7
Q ss_pred CeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCC-CCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHH
Q 018556 141 RRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYER-MTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKR 219 (354)
Q Consensus 141 ~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~-~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~ 219 (354)
+.+.||..+|+...|.+..-..+.+.|+|+|.+|+|||++. ....+..+|+|+..=++|.+-.. .++..++..+++.
T Consensus 181 ~~~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf--~DLKgvLe~LLr~ 258 (533)
T TIGR00470 181 TTLTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSV--DDGKAVAEGLLAQ 258 (533)
T ss_pred hCcccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCH--HHHHHHHHHHHHH
Confidence 56799999999888888752223468999999999999984 46678999999999999986444 4578888888898
Q ss_pred hcCCCCcEE-----------------------------EEeCCHHHHH-HHHHHCCCChh
Q 018556 220 IGITASDVG-----------------------------FRISSRKVLQ-EVLRCHSIPEH 249 (354)
Q Consensus 220 lgl~~~~~~-----------------------------i~lgh~~il~-~il~~~gl~~~ 249 (354)
||.. ++. ++|+..++++ .+|+.+|++.+
T Consensus 259 LG~~--~vRFRPsekrskyYFPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~P 316 (533)
T TIGR00470 259 FGFT--KFRFRPDEKKSKYYIPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVP 316 (533)
T ss_pred hCCc--eEEeccCcCCCCCcCCCceEEEEEEccCCCceEEEEeccccCHHHHHHcCCCCc
Confidence 8854 111 5556666665 57888888754
No 96
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00011 Score=73.29 Aligned_cols=124 Identities=23% Similarity=0.302 Sum_probs=94.8
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHH-HHCCCeEecCCcccchHHhhhhhhhh--hcc---------c------------
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEE--IRD---------Q------------ 131 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf-~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~---------~------------ 131 (354)
..|.+||.|.+..+..+|.+.|+++| -.-+--||+.|++.|++++.. +|+. ..+ +
T Consensus 35 VsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~Vlka-SGHVdkF~D~mvkD~ktGecfRADHLvk~~~ 113 (599)
T KOG2298|consen 35 VSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKA-SGHVDKFADWMVKDEKTGECFRADHLVKDAE 113 (599)
T ss_pred cccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhc-ccchhhhhHHHhcCccccceehhhHHHHHHH
Confidence 57999999999999999999999999 567899999999999998864 3542 000 0
Q ss_pred --------------------------------------------------------cE-EeecCC-CCeEeeCCCCcHH-
Q 018556 132 --------------------------------------------------------LY-CFEDRG-NRRVALRPELTPS- 152 (354)
Q Consensus 132 --------------------------------------------------------l~-~f~D~~-G~~l~LRpD~T~~- 152 (354)
|| ..+.++ |-.-.|||+....
T Consensus 114 ~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQG~ 193 (599)
T KOG2298|consen 114 ERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQGQ 193 (599)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCccccccc
Confidence 11 011122 3346799987665
Q ss_pred ---HHHHHHHhCCCCCCCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCC
Q 018556 153 ---LARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPA 202 (354)
Q Consensus 153 ---iaR~~a~~~~~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~ 202 (354)
+-|++--+. ..+|+-..+||+.||+| .|+.| |.|||+++.+|-|-.+.
T Consensus 194 FlNFkrlle~N~--~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEHFvdP~ 247 (599)
T KOG2298|consen 194 FLNFKRLLEFNQ--GKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEHFVDPL 247 (599)
T ss_pred cccHHHHHHhcC--CCCcchHHHhchHhhhccCcccCceeEEEeehHHhhccCCCC
Confidence 566665443 46899999999999999 77777 89999999999997653
No 97
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=9.7e-05 Score=71.52 Aligned_cols=131 Identities=19% Similarity=0.299 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccchHHh------hhh--hhhhhccccEEeecCC-------------------C--
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALF------IRK--AGEEIRDQLYCFEDRG-------------------N-- 140 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~------~~~--~g~~~~~~l~~f~D~~-------------------G-- 140 (354)
.-++++.+|++|-..||.|+-|--+-...-| ... ..++ ..+.|-+.|+. |
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARD-ahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~y 292 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARD-AHDTFFLKDPATSTKFPEDYLERVKAVHEQGGY 292 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccc-cccceEecChhhcccCCHHHHHHHHHHHhcCCc
Confidence 5678899999999999999988755443333 210 0011 12344343321 1
Q ss_pred --------------CeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhH
Q 018556 141 --------------RRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAE 206 (354)
Q Consensus 141 --------------~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aD 206 (354)
+..+||-..|.--||++-+-..+.-.|.|+|.|.+|||+|.....+.-||+|+.--|.+..-...|
T Consensus 293 gs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgd 372 (483)
T KOG2784|consen 293 GSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGD 372 (483)
T ss_pred CCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHH
Confidence 456889999999999887765545679999999999999988888999999997777766544455
Q ss_pred HHHHHHHHHHHHHhcCC
Q 018556 207 AELISSIITFFKRIGIT 223 (354)
Q Consensus 207 aEvi~l~~e~l~~lgl~ 223 (354)
+|.++.+++..+|++
T Consensus 373 --Lig~l~~ff~~lg~t 387 (483)
T KOG2784|consen 373 --LIGILMEFFTKLGAT 387 (483)
T ss_pred --HHHHHHHHHhccCCc
Confidence 899999999999976
No 98
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00051 Score=69.00 Aligned_cols=103 Identities=22% Similarity=0.374 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHH-HHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 87 MRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf-~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
.+.+..+...+++.| .++||.+|+||++-. +.-|.. .+=++--..+.|.-++|. -.-.++-.++....
T Consensus 178 LrlRS~~v~~iR~yl~n~~GFvevETPtLFk-----rTPgGA-~EFvVPtr~~~g~FYaLp-QSPQQfKQlLMvsG---- 246 (628)
T KOG2411|consen 178 LRLRSNVVKKIRRYLNNRHGFVEVETPTLFK-----RTPGGA-REFVVPTRTPRGKFYALP-QSPQQFKQLLMVSG---- 246 (628)
T ss_pred HHHHHHHHHHHHHHHhhhcCeeeccCcchhc-----cCCCcc-ceeecccCCCCCceeecC-CCHHHHHHHHHHhc----
Confidence 467778888888888 589999999998743 222221 111222222347777774 33345555555544
Q ss_pred CCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
-=|+|++++|||+|..+.-|.-||+|.|+|.-=.+
T Consensus 247 -idrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~~ 281 (628)
T KOG2411|consen 247 -IDRYYQIARCFRDEDLRADRQPEFTQVDMEMSFTD 281 (628)
T ss_pred -hhhHHhHHhhhcccccCcccCCcceeeeeEEeccC
Confidence 33999999999999777778899999999986543
No 99
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.40 E-value=0.0015 Score=68.06 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchH
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA 118 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~ 118 (354)
-+++|..+...+++.|..+||.+|.||++...+
T Consensus 214 vlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 214 VIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 468899999999999999999999999996654
No 100
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=97.32 E-value=0.0014 Score=59.14 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCCCCCCeE
Q 018556 91 NWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (354)
Q Consensus 91 ~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR 169 (354)
+.+++.+++.+...||.|+.|.+|...+.... .+.. .+..+++.++ +...=+||+-+.+++...++.+.+....|+|
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~~~~-~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~ 80 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-FDGG-LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLR 80 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-ccCC-CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEe
Confidence 45678889999999999999999877644332 1111 2246778777 5566789999999999999988765568999
Q ss_pred EEEecceeecCCCCCCcccceEEeeeeEeccCC--------hhhH-HHHHHHHHHHHHHhcC
Q 018556 170 WFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAE-AELISSIITFFKRIGI 222 (354)
Q Consensus 170 ~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~--------~~aD-aEvi~l~~e~l~~lgl 222 (354)
+|.+|+||..+.. .++|..-+++-+-|... ...| .++-.++..++..+|+
T Consensus 81 lFEiG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~ 139 (198)
T cd00769 81 LFEIGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGI 139 (198)
T ss_pred EEEeEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCC
Confidence 9999999976431 23566666666777531 1123 3455666777777775
No 101
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.31 E-value=0.00091 Score=74.78 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee-cCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~-D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
.+++.++...+++.|...||.||+||++...+ .|. ..+.|... +--+..+.||----.-.=|+++.-
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~-----gGa--~a~pF~t~~~~~~~~~yLriSPELylKrLivgG----- 837 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPILQQVH-----GGA--NARPFVTHINAYDMDLYLRIAPELYLKRLCVGG----- 837 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC-----CCc--ccceeEeeecCCCccchhhcChHHHHHHHHhcc-----
Confidence 46888999999999999999999999996432 121 12334321 222333444432222333444322
Q ss_pred CCeEEEEecceeecCCCCCCcccceEEeeeeEecc
Q 018556 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~ 200 (354)
--|+|++|++||+|....-|.-||+|+++|.-..
T Consensus 838 -~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~ 871 (1094)
T PRK02983 838 -VERVFELGRNFRNEGVDATHNPEFTLLEAYQAHA 871 (1094)
T ss_pred -cCceEEEcceecCCCCCCCccccccchhhhhhcC
Confidence 3499999999999977666788999999998765
No 102
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.22 E-value=0.0027 Score=66.18 Aligned_cols=101 Identities=18% Similarity=0.218 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-------CCCe-EeeC----------CC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-------GNRR-VALR----------PE 148 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-------~G~~-l~LR----------pD 148 (354)
.+++..+...+++.|..+||.+|+||++...+. . | ..++|.+... .|.. .+|+ .|
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~--E--G---A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~d 298 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPIITASDC--E--G---AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQD 298 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeecccCC--C--c---cccCceeeeccccccccccccccccccCcccccccchh
Confidence 478889999999999999999999999976431 0 1 2344544211 0110 1111 00
Q ss_pred -------CcHHH---HHHHHHhCCCCCCCeEEEEecceeecCCCCCC-cccceEEeeeeEecc
Q 018556 149 -------LTPSL---ARLVIQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGV 200 (354)
Q Consensus 149 -------~T~~i---aR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei~g~ 200 (354)
+|.+- ...++. ---|+|++|++||.|..... +.-||+|+++|+-..
T Consensus 299 yF~~~~~LtvS~QL~~E~~~~------~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~ 355 (565)
T PLN02603 299 FFGKPAFLTVSGQLNGETYAT------ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 355 (565)
T ss_pred hhCcceeeccCchHHHHHHHh------cccceEEEecceeCCCCCCccccccceeeeeeeecC
Confidence 11110 011111 12489999999999977544 568999999998553
No 103
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.14 E-value=0.0048 Score=64.43 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchH
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA 118 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~ 118 (354)
-++++..+...+++.|.+.||.+|.||.+-..+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 357888999999999999999999999986643
No 104
>PLN02788 phenylalanine-tRNA synthetase
Probab=97.12 E-value=0.0078 Score=60.17 Aligned_cols=131 Identities=13% Similarity=0.136 Sum_probs=90.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHC---CCeEec--CCcccchHHhhhh-hhh-h---hccccEEeecCCCCeEeeCCCCcH
Q 018556 82 FPPEDMRLRNWLFHNFQEVSRLF---GFEEVD--FPVLESEALFIRK-AGE-E---IRDQLYCFEDRGNRRVALRPELTP 151 (354)
Q Consensus 82 ~~p~~~~~~~~i~~~l~~vf~~~---Gy~eI~--tP~le~~~~~~~~-~g~-~---~~~~l~~f~D~~G~~l~LRpD~T~ 151 (354)
+......-...+.+.++++|... ||+.++ .|+.+...-|... ... + -....|-+- ...+||-..|+
T Consensus 62 l~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~----~~~lLRTHTSa 137 (402)
T PLN02788 62 LHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD----AQTVLRCHTSA 137 (402)
T ss_pred CCCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec----CCccccCCCcH
Confidence 44444555677888899999887 999998 5655544444321 011 1 133456552 34799999999
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccC------C----hhhHHHHHHHHHHHHHHh-
Q 018556 152 SLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP------A----VTAEAELISSIITFFKRI- 220 (354)
Q Consensus 152 ~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~------~----~~aDaEvi~l~~e~l~~l- 220 (354)
--+|++.+. .| |+...|+|||++.....+.-+|+|+..-+++.. + ...-+++..++..+++.+
T Consensus 138 ~q~~~l~~~-----~~-~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lf 211 (402)
T PLN02788 138 HQAELLRAG-----HT-HFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLF 211 (402)
T ss_pred HHHHHHHhC-----CC-cEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhc
Confidence 999998853 13 999999999999888889999999966666421 1 123456777777777777
Q ss_pred cC
Q 018556 221 GI 222 (354)
Q Consensus 221 gl 222 (354)
|+
T Consensus 212 g~ 213 (402)
T PLN02788 212 GD 213 (402)
T ss_pred CC
Confidence 65
No 105
>PLN02532 asparagine-tRNA synthetase
Probab=97.09 E-value=0.0046 Score=65.04 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccch
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE 117 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~ 117 (354)
-+++|..+...+++.|..+||.+|.||.+...
T Consensus 234 ilRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s 265 (633)
T PLN02532 234 VTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265 (633)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeccc
Confidence 35789999999999999999999999999664
No 106
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0058 Score=61.39 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCC-CeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGN-RRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G-~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-++++..+...+++.|.+.||.+|.||.+...+. +-..++|++.--+. --|+-.|-+-.+ +++..
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~-------EGg~elF~v~yf~~~a~LtqS~QLyke---~~~~a---- 198 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT-------EGGGELFKVDYFDKEAYLTQSPQLYKE---ALAAA---- 198 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC-------CCCceeEEEeecCcceEEecCHHHHHH---HHHHH----
Confidence 4678999999999999999999999999877542 11345665432111 111111211111 12211
Q ss_pred CCCeEEEEecceeecCCCCCC-cccceEEeeeeEeccC
Q 018556 165 SLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei~g~~ 201 (354)
--|+|.+|++||-|++... +..||+|.++|+-..+
T Consensus 199 --l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~ 234 (435)
T COG0017 199 --LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFAD 234 (435)
T ss_pred --hCceEEecCceecCCCCCcchhhhHheecceeccCc
Confidence 3399999999999976544 5899999999998875
No 107
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0025 Score=63.19 Aligned_cols=148 Identities=18% Similarity=0.261 Sum_probs=110.0
Q ss_pred cccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCC-----
Q 018556 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGN----- 140 (354)
Q Consensus 68 ~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G----- 140 (354)
..|++....+|++-+-|....+++.|.+-+...+++.|-+....|+|-+...++....+. +..++-.+. +.|
T Consensus 79 ~emieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVT-r~G~seLe 157 (551)
T KOG4163|consen 79 GEMIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVT-RAGNSELE 157 (551)
T ss_pred hhhheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEEE-ecCCcccc
Confidence 356777889999999999999999999999999999999999999999998886532221 345554444 444
Q ss_pred CeEeeCCC----CcHHHHHHHHHhCCCCCCCeEEEEecceeecC--CCCC-CcccceE-EeeeeEeccCChhhHHHH---
Q 018556 141 RRVALRPE----LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE--RMTR-GRRREHY-QWNMDIIGVPAVTAEAEL--- 209 (354)
Q Consensus 141 ~~l~LRpD----~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e--~~~~-Gr~rEf~-Q~g~Ei~g~~~~~aDaEv--- 209 (354)
+.+++||. |-+..+.++.++ +++|+|+=+..+|-|-| .|+. -|.|||+ |-|=-.+-. ..+||.||
T Consensus 158 epiaiRPTSETvmyp~yakWi~Sh---RDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat-~~eA~eEvlqi 233 (551)
T KOG4163|consen 158 EPIAIRPTSETVMYPYYAKWIQSH---RDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFAT-PEEAEEEVLQI 233 (551)
T ss_pred cceeeccCccceecHHHHHHHHhh---ccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCC-HhHHHHHHHHH
Confidence 46899994 445677777665 67999999999999998 3443 3889996 656444433 34566665
Q ss_pred HHHHHHHHHHh
Q 018556 210 ISSIITFFKRI 220 (354)
Q Consensus 210 i~l~~e~l~~l 220 (354)
|.+..+++.++
T Consensus 234 LdlYa~vy~el 244 (551)
T KOG4163|consen 234 LDLYARVYEEL 244 (551)
T ss_pred HHHHHHHHHhh
Confidence 44556777654
No 108
>PRK07080 hypothetical protein; Validated
Probab=96.57 E-value=0.046 Score=52.73 Aligned_cols=160 Identities=17% Similarity=0.176 Sum_probs=107.5
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCC----CeEecCCcccchHHhhhhhhh--hhccccEE---ee--------
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFG----FEEVDFPVLESEALFIRKAGE--EIRDQLYC---FE-------- 136 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~G----y~eI~tP~le~~~~~~~~~g~--~~~~~l~~---f~-------- 136 (354)
-+|.|+.-++.. ....+.+.+.+.+++.++| ++++..|.+.+.+.|.+. |- ...+.++. |.
T Consensus 31 ~~~~g~~g~ygr-s~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~-~Y~ksFP~l~~~V~~~~g~~~e~~~ 108 (317)
T PRK07080 31 LIPTGVDGLYGR-SGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERS-GYLKSFPQLAGTVHSFCGNEAEHRR 108 (317)
T ss_pred eeccCCCccccc-cHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhc-ChhhhCcccceeecCCCCCCHHHHH
Confidence 467777666654 3456667777777777777 999999999998887642 21 11122221 11
Q ss_pred -------------cCCCCeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCC-CCcccceEEeeeeEeccCC
Q 018556 137 -------------DRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVPA 202 (354)
Q Consensus 137 -------------D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~-~Gr~rEf~Q~g~Ei~g~~~ 202 (354)
+.....++|.|-.+.|+--.++....-......+=-.|.|||+|... ..|..||.|-.+-.+|.+.
T Consensus 109 ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~e 188 (317)
T PRK07080 109 LLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEPSLDPARMQLFRMREYVRIGTPE 188 (317)
T ss_pred HHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCCCCCcHHHhheeeeEEEEecCHH
Confidence 11234689999999999888876532112235566679999999543 3389999999999999765
Q ss_pred hhhH--HHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHH
Q 018556 203 VTAE--AELISSIITFFKRIGITASDVGFRISSRKVLQ 238 (354)
Q Consensus 203 ~~aD--aEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~ 238 (354)
...+ -.-+..+.++.+.|||+ +.+++.+=-++.
T Consensus 189 ~v~~~r~~w~e~~~~l~~~LgL~---~~ve~AnDPFF~ 223 (317)
T PRK07080 189 QIVAFRQSWIERGTAMADALGLP---VEIDLANDPFFG 223 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc---eeEeecCCcccc
Confidence 4333 23477788888999996 778888755443
No 109
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.021 Score=58.06 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEE-eecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYC-FEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~-f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
...+.+|...+++.+...||-||+||++.+- .|.. ...-|. ..+--.-.+.||=-...-+-|.+..-
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i------~GGA-~ArPF~ThhNald~dlyLRIApELyLKRliVGG----- 247 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPI------PGGA-AARPFITHHNALDMDLYLRIAPELYLKRLIVGG----- 247 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEecccccccc------CCCc-ccccceeeecccCCceEEeeccHHHHHHHHhcC-----
Confidence 3567788999999999999999999998763 2322 222232 22223445777766666677777642
Q ss_pred CCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhH-HHHHHHHHHHHHHh-----c---CCCCcEEEEeCC---
Q 018556 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAE-AELISSIITFFKRI-----G---ITASDVGFRISS--- 233 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aD-aEvi~l~~e~l~~l-----g---l~~~~~~i~lgh--- 233 (354)
--|+|.+|++||+|.....+.=||+.+.++.- .+| ..++.+.-+.++.+ | +.-.+.+|+++-
T Consensus 248 -~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~A-----YaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ 321 (502)
T COG1190 248 -FERVFEIGRNFRNEGIDTTHNPEFTMLEFYQA-----YADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFK 321 (502)
T ss_pred -chhheeeccccccCCCccccCcchhhHHHHHH-----HhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCee
Confidence 34999999999999766666678887655432 233 23444444444433 2 111133444443
Q ss_pred -HHHHHHHHHHCCC
Q 018556 234 -RKVLQEVLRCHSI 246 (354)
Q Consensus 234 -~~il~~il~~~gl 246 (354)
..+.+++.+..|+
T Consensus 322 ri~m~dal~e~~g~ 335 (502)
T COG1190 322 RITMVDALKEYLGV 335 (502)
T ss_pred eeehHHHHHHHhCc
Confidence 5677788888886
No 110
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=96.46 E-value=0.033 Score=58.27 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHh-hhhhhhhhccccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALF-IRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~-~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
....+.+.+.+++.+...||.|+.|-+|...+.. .. .+-. .++.+++.++ +...=+||+-+.+++.+.++.+. +.
T Consensus 361 ~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~-~~~~-~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~-~~ 437 (551)
T TIGR00471 361 LKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKR-MRIE-DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENK-HH 437 (551)
T ss_pred cChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHH-hccC-CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc-cC
Confidence 3445677888899999999999999888776432 32 2211 2245777777 55667999999999999999887 56
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCC
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~ 223 (354)
..|+|+|.+|+||..+....-+.+++...++-+.|.. ..-.++-..+..++..+|++
T Consensus 438 ~~~~~lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~--~df~d~Kg~ve~ll~~l~i~ 494 (551)
T TIGR00471 438 ELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSE--ANFNEIKSIVAALARELGIE 494 (551)
T ss_pred CCCeeEEEEEEEEEcCCccccccceeeEEEEEEECCC--CCHHHHHHHHHHHHHHcCCc
Confidence 8899999999999643211102334466777777742 11245566667777788763
No 111
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=95.71 E-value=0.064 Score=56.64 Aligned_cols=131 Identities=17% Similarity=0.173 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHH-hhhhhhhhhc-cccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEEIR-DQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKS 163 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~-~~~~~g~~~~-~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~ 163 (354)
....+++.+.+++.+...||.|+.+-+|...+. +.. .+.... ....++.++ +...=+||+.+.+++...++.+.+.
T Consensus 396 ~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~ 474 (597)
T PLN02265 396 QQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAM-LNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDA 474 (597)
T ss_pred CCHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHh-hcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcC
Confidence 344677888899999999999999988877643 432 221111 135677776 4555689999999999999988754
Q ss_pred CCCCeEEEEecceeecCCCC-CCcccceEEeeeeEeccCChhhH-HHHHHHHHHHHHHhcCC
Q 018556 164 VSLPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVPAVTAE-AELISSIITFFKRIGIT 223 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e~~~-~Gr~rEf~Q~g~Ei~g~~~~~aD-aEvi~l~~e~l~~lgl~ 223 (354)
+.|+|+|.+|+||-.+... .| .+|..-+++=+.|.. ++ .++-.++..++..+|+.
T Consensus 475 -~~p~klFEiG~V~~~~~~~~~~-~~e~~~la~~~~g~~---~~f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 475 -PKPIKLFEVSDVVLLDESKDVG-ARNSRRLAALYCGTT---SGFEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred -CCCeeEEEeEeEEecCCcccCC-cchhhEEEEEEECCC---CCHhhHHHHHHHHHHHcCCc
Confidence 5599999999999644211 11 145556677777743 33 34556667777888874
No 112
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.0089 Score=59.92 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccE-EeecCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLY-CFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~-~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-..++.+|...+|+.+...||-||+||++... .|... ..-| .....-+..+.||=---.-+-+++..-
T Consensus 224 ~f~~RakII~~iRkfld~rgFlEVETPmmn~i------aGGA~-AkPFIT~hndldm~LylRiAPEL~lK~LvVGG---- 292 (560)
T KOG1885|consen 224 RFRIRAKIISYIRKFLDSRGFLEVETPMMNMI------AGGAT-AKPFITHHNDLDMDLYLRIAPELYLKMLVVGG---- 292 (560)
T ss_pred HHHHHHHHHHHHHHHhhhcCceEecchhhccc------cCccc-cCceeecccccCcceeeeechHHHHHHHHhcc----
Confidence 34678899999999999999999999998553 23322 2223 222222333555543333444555432
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeee
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMD 196 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~E 196 (354)
--|+|.||++||+|.-...+--||+-|.++
T Consensus 293 --ldrVYEIGr~FRNEGIDlTHNPEFTTcEfY 322 (560)
T KOG1885|consen 293 --LDRVYEIGRQFRNEGIDLTHNPEFTTCEFY 322 (560)
T ss_pred --HHHHHHHHHHhhhcCcccccCCCcchHHHH
Confidence 449999999999997666677788776654
No 113
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=94.33 E-value=0.11 Score=51.29 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-------CCCeEeeCCCCcHHHHHHH
Q 018556 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-------GNRRVALRPELTPSLARLV 157 (354)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-------~G~~l~LRpD~T~~iaR~~ 157 (354)
.-+|++..+.....+.|..+||..|.||.+...|-= +. .++|++... -|+..-|.--.-..+--+.
T Consensus 130 av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCE--Ga-----GE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a 202 (446)
T KOG0554|consen 130 AVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCE--GA-----GEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMA 202 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCC--CC-----cceEEEEecCcccccccCCceEEEEeceehHHHHH
Confidence 457899999999999999999999999999876531 22 345654421 1333333222222222222
Q ss_pred HHhCCCCCCCeEEEEecceeecCCCCCC-cccceEEeeeeEeccCChh
Q 018556 158 IQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPAVT 204 (354)
Q Consensus 158 a~~~~~~~~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei~g~~~~~ 204 (354)
. . --|.|.+|+.||.|+++.- +.-||++..+|+--.++..
T Consensus 203 ~-~------LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~ 243 (446)
T KOG0554|consen 203 C-A------LSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLD 243 (446)
T ss_pred h-h------hcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHH
Confidence 1 1 2389999999999977654 5789999999987665443
No 114
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=93.87 E-value=0.51 Score=51.62 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=85.1
Q ss_pred HHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEe
Q 018556 95 HNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAV 173 (354)
Q Consensus 95 ~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~ 173 (354)
+++++.+...||.|+.|-+|...+.+.. .+....+..+++.++ +...=+||+-+.+++.+.++.+.+....++|+|.+
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~-~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEi 576 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEK-FNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEI 576 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHh-hcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEee
Confidence 5778899999999999999877643322 222111125777776 44556899999999999999887655789999999
Q ss_pred cceeecCCCCCCcccceEEeeeeEeccCC--------hhhH-HHHHHHHHHHHHHhcCC
Q 018556 174 GQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAE-AELISSIITFFKRIGIT 223 (354)
Q Consensus 174 g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~--------~~aD-aEvi~l~~e~l~~lgl~ 223 (354)
|+||..+.. . .+|....++=+-|... ...| .++-..+..++..+++.
T Consensus 577 G~V~~~~~~--~-~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 577 GKVFAKDGL--G-VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLS 632 (798)
T ss_pred ecccCCCCC--C-cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCC
Confidence 999954221 1 4566666776776421 1124 34555666777777764
No 115
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=93.77 E-value=0.51 Score=48.00 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHC--------CCeEecC--CcccchHHhhhh-hhh-h---hccccEEeecCCCCeEeeCCCCcHHHH
Q 018556 90 RNWLFHNFQEVSRLF--------GFEEVDF--PVLESEALFIRK-AGE-E---IRDQLYCFEDRGNRRVALRPELTPSLA 154 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~--------Gy~eI~t--P~le~~~~~~~~-~g~-~---~~~~l~~f~D~~G~~l~LRpD~T~~ia 154 (354)
...+.+.|.++|.+. ||+.++. |+...+.-|... ... + .....|-+ ....+||...++--+
T Consensus 44 l~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi----~~~~lLRTHTSa~q~ 119 (460)
T TIGR00469 44 LGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI----NEQHLLRAHTSAHEL 119 (460)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe----cCCceeCCCCcHHHH
Confidence 455777888888777 8998887 855445555431 111 1 13345555 244799999999999
Q ss_pred HHHHHhCCCCCCCeE--EEEecceeecCCCCCCcccceEEee
Q 018556 155 RLVIQKGKSVSLPLK--WFAVGQCWRYERMTRGRRREHYQWN 194 (354)
Q Consensus 155 R~~a~~~~~~~~PlR--~~y~g~VfR~e~~~~Gr~rEf~Q~g 194 (354)
|++.+... ...|.| +...|+|||++.....+.-.|+|+.
T Consensus 120 ~~~~~~~~-~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~E 160 (460)
T TIGR00469 120 ECFQGGLD-DSDNIKSGFLISADVYRRDEIDKTHYPVFHQAD 160 (460)
T ss_pred HHHHhccc-cCCCcceeeEeecceeeCCCCccccCccceeeE
Confidence 98876532 125777 9999999999987888899999996
No 116
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=93.56 E-value=0.54 Score=51.44 Aligned_cols=131 Identities=14% Similarity=0.160 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
....+...+++++.+...||.|+.|-+|...+.... .+. ....+++..+ +.+.=+||+-+.+++.+.++.+.+...
T Consensus 486 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~-~~~--~~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~ 562 (791)
T PRK00629 486 LTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKL-FGL--NPEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGN 562 (791)
T ss_pred CCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-cCC--CCCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCC
Confidence 334455677889999999999999988877644321 221 1234667666 455568999999999999998876556
Q ss_pred CCeEEEEecceeecCCCCCCcccceEEeeeeEeccCC-------hhhH-HHHHHHHHHHHHHhcCC
Q 018556 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA-------VTAE-AELISSIITFFKRIGIT 223 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~-------~~aD-aEvi~l~~e~l~~lgl~ 223 (354)
.++|+|.+|+||.... +..+|..-.++=+-|... ...| .++-..+..++..+|+.
T Consensus 563 ~~i~lFEiG~Vf~~~~---~~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l~~~ 625 (791)
T PRK00629 563 KDVALFEIGRVFLPDG---DLPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEALGLP 625 (791)
T ss_pred CCEeEEeeeeeeCCCC---CCCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999996531 123455556666666321 1123 34566667777777774
No 117
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.49 E-value=0.18 Score=50.13 Aligned_cols=112 Identities=19% Similarity=0.248 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCC-eEeeCCCCcHHHHHHHHHhCCCCCC
Q 018556 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNR-RVALRPELTPSLARLVIQKGKSVSL 166 (354)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~-~l~LRpD~T~~iaR~~a~~~~~~~~ 166 (354)
++..-++..+++.+...||.+|.||-+..... -| ..++|++.=-++. -++=.|-+--+.| -. ..
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~asS----EG---GanvF~v~Yfk~~A~LAQSPQLyKQMa----I~----gd 293 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGASS----EG---GANVFRVSYFKQKAYLAQSPQLYKQMA----IC----GD 293 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceecccccccccC----CC---CceeEEEEeccCcchhhcChHHHHHHH----Hh----cc
Confidence 56778899999999999999999998755431 01 3567765433332 2344444444433 21 12
Q ss_pred CeEEEEecceeecCCCCC-CcccceEEeeeeEeccCChhhHHHHHHHHHHHH
Q 018556 167 PLKWFAVGQCWRYERMTR-GRRREHYQWNMDIIGVPAVTAEAELISSIITFF 217 (354)
Q Consensus 167 PlR~~y~g~VfR~e~~~~-Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l 217 (354)
--|+|.+|+|||.|.+.- -+.-||.-+|+|.-=. .-.-||+..+.+.|
T Consensus 294 f~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~---~hYhEVm~~i~~lf 342 (533)
T KOG0556|consen 294 FERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFN---EHYHEVMDTIGELF 342 (533)
T ss_pred hhheeeecceeeccccchhhhhHHhhCcchhhHHH---HHHHHHHHHHHHHH
Confidence 559999999999986543 2567887666664221 13356666555544
No 118
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=92.89 E-value=0.68 Score=49.95 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
....+++.+.+++.+...||.|+.|-+|...+.+ ..+.+++.++ +...=+||+-+.+++...++.+.+...
T Consensus 397 ~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~--------~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~ 468 (704)
T CHL00192 397 LDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF--------SKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGN 468 (704)
T ss_pred CCHHHHHHHHHHHHHHhCCCceEecccccChhhc--------CCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3345667788899999999999999887665432 1235777777 555669999999999999999876666
Q ss_pred CCeEEEEecceeecCCCCCCcccceEEeeeeEeccC---C------hhhH-HHHHHHHHHHHHHhcC
Q 018556 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP---A------VTAE-AELISSIITFFKRIGI 222 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~---~------~~aD-aEvi~l~~e~l~~lgl 222 (354)
.++|+|.+|+||-.+.. ..+|-...++-+.|.. . ...| .++-..+..++..+|+
T Consensus 469 ~~~rlFEiG~Vf~~~~~---~~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l~i 532 (704)
T CHL00192 469 STLEGFEIGHVFNLDSS---SIIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKLNL 532 (704)
T ss_pred CCEeEEEeeeeEcCCCc---cccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHCCC
Confidence 89999999999954221 1245555666677741 1 1224 3455566677778876
No 119
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=92.15 E-value=0.61 Score=48.09 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=54.9
Q ss_pred CCCeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCC-CCCcccceEEeeeeEeccCChhh-HHHHHHHHHHH
Q 018556 139 GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTA-EAELISSIITF 216 (354)
Q Consensus 139 ~G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~-~~Gr~rEf~Q~g~Ei~g~~~~~a-DaEvi~l~~e~ 216 (354)
....-+||+.+|+++...++.+..+...|+|+|.+|+|||.+.. ...+...+.+. ..+ ..+... -.++..++..+
T Consensus 180 ~~~~svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~eE~t~La~llsG--s~W-~~~e~vDFfDlKGiLE~L 256 (529)
T PRK06253 180 ESSRLTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQREDASRLMTYHSA--SCV-IADEDVTVDDGKAVAEGL 256 (529)
T ss_pred ccccCccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCccchhheeEEEEc--ccc-ccCCCCCHHHHHHHHHHH
Confidence 45677999999999999988887667889999999999987521 11122233322 111 111222 34677777888
Q ss_pred HHHhcCC
Q 018556 217 FKRIGIT 223 (354)
Q Consensus 217 l~~lgl~ 223 (354)
++.+|++
T Consensus 257 L~~LGI~ 263 (529)
T PRK06253 257 LSQFGFT 263 (529)
T ss_pred HHHcCCC
Confidence 8888874
No 120
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=89.08 E-value=0.21 Score=49.22 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=55.1
Q ss_pred CCeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecC-CCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHH
Q 018556 140 NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFK 218 (354)
Q Consensus 140 G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e-~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~ 218 (354)
...+.||..||...-=.+..-....++|+|+|.|.+|||.| +....|.-..+-+.+-+++.+-...|.- +++--+|+
T Consensus 180 s~tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GK--aVAEglL~ 257 (536)
T COG2024 180 SSTLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGK--AVAEGLLR 257 (536)
T ss_pred CCceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccH--HHHHHHHH
Confidence 45688999998874333333333457899999999999998 3344567777888888888754333321 23445667
Q ss_pred HhcCC
Q 018556 219 RIGIT 223 (354)
Q Consensus 219 ~lgl~ 223 (354)
.+|..
T Consensus 258 qfGFe 262 (536)
T COG2024 258 QFGFE 262 (536)
T ss_pred HhCcc
Confidence 78876
No 121
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=88.03 E-value=1.9 Score=46.21 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
....+...+.+++.+...||+|+.|-.|...+..... +.. ..+..++..+ +-..=+||+-+-+++...++.+.+ ++
T Consensus 350 ~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~-~~~-~~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~-r~ 426 (650)
T COG0072 350 LTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLF-GLE-NDEALELANPISEEYSVLRTSLLPGLLEALSYNKN-RK 426 (650)
T ss_pred CChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHh-ccC-CCcceEecCCcchhHHHHHHHHHHHHHHHHHHhhc-cC
Confidence 4456667788999999999999999988887655432 211 1114556655 344558899999999998887764 57
Q ss_pred CC-eEEEEecceeecC
Q 018556 166 LP-LKWFAVGQCWRYE 180 (354)
Q Consensus 166 ~P-lR~~y~g~VfR~e 180 (354)
.| .|+|.+|.||-.+
T Consensus 427 ~~~~~iFEiG~v~~~~ 442 (650)
T COG0072 427 NPDVRIFEIGDVFVKD 442 (650)
T ss_pred CCCeeEEEeeeeEecC
Confidence 78 9999999999986
No 122
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.97 E-value=11 Score=37.73 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~ 166 (354)
.+++..+...++++|...||.||.+|++--..+= | ...+|++ |=-|+.-. +|.+---++-+.. +-
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVE----G---GsTLFkl-dYyGEeAy----LTQSSQLYLEtcl---pA 307 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQVE----G---GSTLFKL-DYYGEEAY----LTQSSQLYLETCL---PA 307 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEec----C---cceEEee-cccCchhh----ccchhHHHHHHhh---hh
Confidence 4678888999999999999999999987654321 1 2345665 33344322 3444444444432 22
Q ss_pred CeEEEEecceeecCCCCC-CcccceEEeeeeEec
Q 018556 167 PLKWFAVGQCWRYERMTR-GRRREHYQWNMDIIG 199 (354)
Q Consensus 167 PlR~~y~g~VfR~e~~~~-Gr~rEf~Q~g~Ei~g 199 (354)
--.+|.|.+-||.|+++- -+..|++-..+|+--
T Consensus 308 lgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~af 341 (545)
T KOG0555|consen 308 LGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAF 341 (545)
T ss_pred cCceeEecHhhhhhhhhhhhhhhhheeeeeeccc
Confidence 348999999999996543 256788888777644
No 123
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=54.62 E-value=1.1e+02 Score=26.29 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=46.0
Q ss_pred eEEeeeeEeccCChh--hHHHHHHHHHHHHHHhcCCCC---cEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHH
Q 018556 190 HYQWNMDIIGVPAVT--AEAELISSIITFFKRIGITAS---DVGFRISSRKVLQEVLRCHSIPEHLFGKVCIII 258 (354)
Q Consensus 190 f~Q~g~Ei~g~~~~~--aDaEvi~l~~e~l~~lgl~~~---~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~l 258 (354)
+.+.|+++.=....- ....+-..+.++|++.|++.. .+.++=|.++|++++-+.+++++++.+.=...+
T Consensus 21 i~~~Gf~~~Ls~~vP~~i~~~i~~~~~~~L~~~g~~~~~~~~wavHPGG~~ILd~v~~~L~L~~~~l~~Sr~vL 94 (151)
T PF02797_consen 21 IGDTGFHFILSKEVPDLISDNIPPFVEDLLARHGLSDWDILFWAVHPGGRKILDAVEEALGLSPEQLRASREVL 94 (151)
T ss_dssp EETTEEEEEE-TTHHHHHHHHHHHHHHHHHHGGTCCSGGGSEEEEE-SSHHHHHHHHHHHTS-GGGGHHHHHHH
T ss_pred EeCCeEEEEEhhHhHHHHHHHHHHHHHHHHhhhcccccccceeeecCChHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344577666555432 234566778888888887633 378999999999999999999987654433333
No 124
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=41.56 E-value=55 Score=30.90 Aligned_cols=125 Identities=15% Similarity=0.195 Sum_probs=65.5
Q ss_pred cccceEEeeeeEeccCCh---hhHHHHHHHHHHHHH-HhcCCCCcEEEEeCCHHHHHHHHHHCC-CChhhHhHHHHHHHH
Q 018556 186 RRREHYQWNMDIIGVPAV---TAEAELISSIITFFK-RIGITASDVGFRISSRKVLQEVLRCHS-IPEHLFGKVCIIIDK 260 (354)
Q Consensus 186 r~rEf~Q~g~Ei~g~~~~---~aDaEvi~l~~e~l~-~lgl~~~~~~i~lgh~~il~~il~~~g-l~~~~~~~v~~~ld~ 260 (354)
+-++..+.|+++++.... ..+.|-+.-+.+.++ ..++ .+.|+-.+..++++.|+.+. .+ +
T Consensus 30 ~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~---plsIDT~~~~v~eaaL~~~~G~~---------i--- 94 (261)
T PRK07535 30 LALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDV---PLCIDSPNPAAIEAGLKVAKGPP---------L--- 94 (261)
T ss_pred HHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCC---CEEEeCCCHHHHHHHHHhCCCCC---------E---
Confidence 446667889999976432 233443333334443 3454 48899999999999999863 11 0
Q ss_pred hccCC-----HHHHHHHHHHcCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHcCCC-ceEEEecCCCC
Q 018556 261 IEKLP-----LDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYS-DWIQFDASVVR 330 (354)
Q Consensus 261 ~~~~~-----~~~i~~~L~~~g~s~~~~~~L~~l~~~~~l~~l~~~al~~L~~l~~~l~~~g~~-~~i~~Dlslvr 330 (354)
+|.++ .+++...+++.|.+- +.-...-.+...-..+.++.++++++.+.+.|++ +.|.+||++..
T Consensus 95 INsIs~~~~~~~~~~~l~~~~g~~v-----v~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~ 165 (261)
T PRK07535 95 INSVSAEGEKLEVVLPLVKKYNAPV-----VALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLP 165 (261)
T ss_pred EEeCCCCCccCHHHHHHHHHhCCCE-----EEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCc
Confidence 11110 111111122211100 0000000111111133467778888888899996 46999998874
No 125
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=40.48 E-value=15 Score=34.44 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=72.7
Q ss_pred CeEEEEecceeecCCCCCCcccceEEeeeeEeccCC-----------hhhHHHHHHHHHHHHHH-hcCCCCcEEEEeCCH
Q 018556 167 PLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA-----------VTAEAELISSIITFFKR-IGITASDVGFRISSR 234 (354)
Q Consensus 167 PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~-----------~~aDaEvi~l~~e~l~~-lgl~~~~~~i~lgh~ 234 (354)
|-.+|. |-.|++...-..+-++..+.|+++|+... ...|.+-+.-+.+.+++ .++ .+.|+--+.
T Consensus 11 ~dsf~~-~~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~---piSIDT~~~ 86 (258)
T cd00423 11 PDSFSD-GGKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV---PISVDTFNA 86 (258)
T ss_pred CCchhh-ccccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC---eEEEeCCcH
Confidence 444454 43444322222355677788999996531 22333323333333333 354 378888999
Q ss_pred HHHHHHHHHCC-----CChhhH-hHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 018556 235 KVLQEVLRCHS-----IPEHLF-GKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKL 308 (354)
Q Consensus 235 ~il~~il~~~g-----l~~~~~-~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~l~~l~~~al~~L~~ 308 (354)
+++++.|+..- ++.... .++..++.+.+.. . + .+...+.... .+ .. ........+.++.+++
T Consensus 87 ~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~~~~-v--V--~m~~~~~~~~-~~---~~---~~~~~~~~~~~~~~~~ 154 (258)
T cd00423 87 EVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAP-V--V--LMHMDGTPQT-MQ---NN---PYYADVVDEVVEFLEE 154 (258)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCC-E--E--EECcCCCCcc-cc---cC---CCcchHHHHHHHHHHH
Confidence 99999998751 111110 2222222221100 0 0 0000000000 00 00 0011222556788888
Q ss_pred HHHHHHHcCCC-ceEEEecCCCCC
Q 018556 309 LFSLAEKFGYS-DWIQFDASVVRG 331 (354)
Q Consensus 309 l~~~l~~~g~~-~~i~~Dlslvr~ 331 (354)
.++.+.+.|+. +.|.+||++-..
T Consensus 155 ~i~~~~~~Gi~~~~IilDPg~g~~ 178 (258)
T cd00423 155 RVEAATEAGIPPEDIILDPGIGFG 178 (258)
T ss_pred HHHHHHHcCCCHHHEEEeCCCCcc
Confidence 88888999985 479999987543
No 126
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=38.71 E-value=55 Score=27.53 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEecC-------CCCCCCCcccee
Q 018556 302 AVADLKLLFSLAEKFGYSDWIQFDAS-------VVRGLAYYTGIV 339 (354)
Q Consensus 302 al~~L~~l~~~l~~~g~~~~i~~Dls-------lvr~l~YYTGiv 339 (354)
.+.++..+-..+.+.|+. |.+|=- ...++|||||.+
T Consensus 20 s~~d~k~~kk~m~~~gIk--V~Idkk~kilP~n~aagFd~~tg~I 62 (132)
T PF15640_consen 20 SVKDIKNFKKEMGKRGIK--VKIDKKDKILPENKAAGFDPETGEI 62 (132)
T ss_pred eHHHHHHHHHHHHhCCcE--EEECCccCCCCccccccCCCCCCcE
Confidence 356888888889999997 666654 456899999976
No 127
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=38.09 E-value=40 Score=30.56 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHcCCC-ceEEEecCCCCC
Q 018556 300 GEAVADLKLLFSLAEKFGYS-DWIQFDASVVRG 331 (354)
Q Consensus 300 ~~al~~L~~l~~~l~~~g~~-~~i~~Dlslvr~ 331 (354)
.+.++.+.+-++.|.+.|+. +.|.+||++..+
T Consensus 143 ~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf~ 175 (210)
T PF00809_consen 143 EEIIEFLEERIEALEKAGIPRERIILDPGIGFG 175 (210)
T ss_dssp HHHHHHHHHHHHHHHHTT--GGGEEEETTTTSS
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEeeccccCcC
Confidence 66677888888888889996 479999998654
No 128
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=37.65 E-value=96 Score=25.69 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 018556 236 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRV 289 (354)
Q Consensus 236 il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l 289 (354)
-++.+|...|+++. .+.+..+- +-.+++.+.++++.++++++++..++|.++
T Consensus 58 pIQTvmRr~g~~~p-YE~LK~lT-Rg~~it~~~l~~fI~~L~ip~~~k~~L~~l 109 (115)
T PF08328_consen 58 PIQTVMRRYGIPNP-YEKLKELT-RGKKITKEDLREFIESLDIPEEAKARLLAL 109 (115)
T ss_dssp HHHHHHHHTT-SSH-HHHHHHHH-TTS---HHHHHHHHHTSSS-HHHHHHHHH-
T ss_pred HHHHHHHHcCCCCH-HHHHHHHH-cCCCCCHHHHHHHHHhCCCCHHHHHHHHhc
Confidence 34445555555542 22222221 222445556666666666666655555443
No 129
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=36.45 E-value=49 Score=33.16 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=58.7
Q ss_pred eeeeEeccCChhhH--HHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHH
Q 018556 193 WNMDIIGVPAVTAE--AELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIK 270 (354)
Q Consensus 193 ~g~Ei~g~~~~~aD--aEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~ 270 (354)
.++|.+.......| .+..+++.++.+..+++ +.|.=.+..++++.++.++-... +|..-...+++++-
T Consensus 68 ~~~D~Ialr~~S~DPae~fa~~vk~V~~a~~~P---LIL~~~D~evl~aale~~~~~kp-------LL~aAt~eNyk~m~ 137 (386)
T PF03599_consen 68 LGADMIALRLESGDPAEEFAKAVKKVAEAVDVP---LILCGCDPEVLKAALEACAGKKP-------LLYAATEENYKAMA 137 (386)
T ss_dssp EE-SEEEEE-GGGSTHHHHHHHHHHHHHC-SSE---EEEESSHHHHHHHHHHHTTTS---------EEEEEBTTTHHHHH
T ss_pred ccccEEEEEecCCChHHHHHHHHHHHHHhcCCC---EEEEeCCHHHHHHHHHHhCcCCc-------EEeEcCHHHHHHHH
Confidence 56777766555566 55666777777767764 55555678999999998862211 11111223444443
Q ss_pred HHHHHcCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHcCCCceEEEecCCC
Q 018556 271 NDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVV 329 (354)
Q Consensus 271 ~~L~~~g~s~~~~~~L~~l~~~~~l~~l~~~al~~L~~l~~~l~~~g~~~~i~~Dlslv 329 (354)
+...+.+.+ +. ..+ ...++.+.++...+.++|++ .|.+|++..
T Consensus 138 ~lA~~y~~p---------l~-v~s-----p~Dln~lk~Ln~~l~~~Gv~-dIVlDpgt~ 180 (386)
T PF03599_consen 138 ALAKEYGHP---------LI-VSS-----PIDLNLLKQLNIKLTELGVK-DIVLDPGTR 180 (386)
T ss_dssp HHHHHCT-E---------EE-EE------SSCHHHHHHHHHHHHTTT-G-GEEEE---S
T ss_pred HHHHHcCCe---------EE-EEe-----cccHHHHHHHHHHHHhcCcc-cEEecCCcc
Confidence 322222211 00 000 12467888888888899994 588999753
No 130
>PLN03152 hypothetical protein; Provisional
Probab=35.74 E-value=35 Score=31.50 Aligned_cols=56 Identities=38% Similarity=0.291 Sum_probs=32.7
Q ss_pred CCccccccccc---------ccccccccCCCCCCcccCCccccCCcchhhhcccccccCCCCCCcccCCCC
Q 018556 1 MPAIHSSLSFY---------MKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPS 62 (354)
Q Consensus 1 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (354)
|.|+|.+|+.. .+|.-++.|-.+-|+|.+.- -.+|+.+.++.+--.|+-.-..++.
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~t------~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (241)
T PLN03152 1 MAALLLSLSPHPPNPQNPNPRKPKPLSRCGASRRDFILHT------ASLCASSLAAQNPLPPSLADPSKPS 65 (241)
T ss_pred CceeEeecCCCCCCCCCCCCCCCCccccccccccceeeeh------hHHHHhhhhcCCCCCccccCCCCCC
Confidence 66777776542 23334466666666665544 6889888776665555444443333
No 131
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=35.68 E-value=66 Score=29.96 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHCCCeEecCCcccchH----HhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCC
Q 018556 91 NWLFHNFQEVSRLFGFEEVDFPVLESEA----LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (354)
Q Consensus 91 ~~i~~~l~~vf~~~Gy~eI~tP~le~~~----~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~ 166 (354)
..|++.+.+.|++.|+..+....+-+.+ +|. ...|..|. .++.... .+.
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFt-------nAGM~~Fk------------------p~f~G~~--~p~ 54 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFT-------NAGMNQFK------------------PIFLGEV--PPP 54 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchhee-------ccchhhhh------------------HHhcCCC--CCC
Confidence 3578899999999999999875555533 222 12233332 2231111 111
Q ss_pred CeEEEEecceeecC-CCCCCcccceEEeeeeEeccCCh--hhHHHHHHHHHHHHHH-hcCCCCcEEEEeC
Q 018556 167 PLKWFAVGQCWRYE-RMTRGRRREHYQWNMDIIGVPAV--TAEAELISSIITFFKR-IGITASDVGFRIS 232 (354)
Q Consensus 167 PlR~~y~g~VfR~e-~~~~Gr~rEf~Q~g~Ei~g~~~~--~aDaEvi~l~~e~l~~-lgl~~~~~~i~lg 232 (354)
--|+....+|.|-. -..-|+- ..+..-+|.+|.-+- .--.|.|..+.|+|.+ +|++...+-+.+-
T Consensus 55 ~~r~~~~QkCiR~~DienVG~t-~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~ 123 (232)
T cd00673 55 ANRLVNSQKCIRAGDIDNVGKT-GRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVF 123 (232)
T ss_pred CCceeeeeeceecCChhhcccc-ccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEe
Confidence 23666677777753 1122311 112234555554332 2337899999999964 8987655545443
No 132
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=30.12 E-value=2.6e+02 Score=28.46 Aligned_cols=119 Identities=15% Similarity=0.257 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcC------CCHHHH
Q 018556 210 ISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAG------MSEAAI 283 (354)
Q Consensus 210 i~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g------~s~~~~ 283 (354)
+-=+.+.+++.|. +.++...-.-+++.+..++=++ ++.+..+-..+.+ ..+.-+|++.. .+++.+
T Consensus 30 mlPi~e~lD~~G~----~slE~WGGATFDaciRfLnEDP--WeRLr~lk~~~~n---T~LQMLlRGQNlvGYrhyaDDvV 100 (472)
T COG5016 30 MLPIAEALDKVGY----WSLEVWGGATFDACIRFLNEDP--WERLRELKKAVPN---TKLQMLLRGQNLVGYRHYADDVV 100 (472)
T ss_pred hHHHHHHHHhcCe----eEEEecCCccHHHHHHHhcCCH--HHHHHHHHHhCCC---cHHHHHHccCccccccCCchHHH
Confidence 3345677888886 4577887788888888887544 4444333222221 23444455432 356677
Q ss_pred HHHHHhhcCCChhhHH-HHH---HHHHHHHHHHHHHcCCCc--eEEEecCCCCCCCCccc
Q 018556 284 EELLRVLSIKSLTELE-GEA---VADLKLLFSLAEKFGYSD--WIQFDASVVRGLAYYTG 337 (354)
Q Consensus 284 ~~L~~l~~~~~l~~l~-~~a---l~~L~~l~~~l~~~g~~~--~i~~Dlslvr~l~YYTG 337 (354)
++..+..--++++... =+| ..+|++-++..++.|.+. .++.+.|=+...+||--
T Consensus 101 e~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~ 160 (472)
T COG5016 101 EKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVE 160 (472)
T ss_pred HHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHH
Confidence 7766554333332221 123 345555555666777653 46666676777777743
No 133
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=29.97 E-value=1.7e+02 Score=30.47 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=38.7
Q ss_pred EeeCCCCcHHHHHHHHHhCCCCCCCeEEEEeccee-ecCCCCCCcccceEEeeee
Q 018556 143 VALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCW-RYERMTRGRRREHYQWNMD 196 (354)
Q Consensus 143 l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~Vf-R~e~~~~Gr~rEf~Q~g~E 196 (354)
-+.|--+-+.+.+.++.+.+ .++|+|+|.++.|- .++....|-..|.+-+.++
T Consensus 443 qv~RtsLlPGllKTv~~N~~-~~lP~klFEisDvv~~D~~~e~ga~N~R~l~A~y 496 (578)
T KOG2472|consen 443 QVVRTSLLPGLLKTVASNRK-MPLPIKLFEISDVVFKDSSTEVGARNERHLAAVY 496 (578)
T ss_pred eeehhhhchHHHHHHHhccC-CCCceeEEEeeeEEEecccccccccchheeeeee
Confidence 46777888899999998865 58999999999875 4445556655555545444
No 134
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=29.97 E-value=2e+02 Score=28.19 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHcCCC-ceEEEecCCC
Q 018556 301 EAVADLKLLFSLAEKFGYS-DWIQFDASVV 329 (354)
Q Consensus 301 ~al~~L~~l~~~l~~~g~~-~~i~~Dlslv 329 (354)
.-++.+.++...+.++|++ +.|.+|++..
T Consensus 184 ~Dln~ak~L~~~l~~~Gi~~edIviDP~~~ 213 (319)
T PRK04452 184 LDINLAKQLNILLTELGVPRERIVMDPTTG 213 (319)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHEEEeCCcc
Confidence 4477888888889999995 3599999863
No 135
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=28.45 E-value=2.6e+02 Score=21.01 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHcCCC
Q 018556 305 DLKLLFSLAEKFGYS 319 (354)
Q Consensus 305 ~L~~l~~~l~~~g~~ 319 (354)
.+.++.+++..+|..
T Consensus 60 sl~~L~~~l~aLG~~ 74 (80)
T PF13744_consen 60 SLDTLLRYLEALGGR 74 (80)
T ss_dssp -HHHHHHHHHHTTEE
T ss_pred CHHHHHHHHHHcCCe
Confidence 466777788888876
No 136
>PRK14136 recX recombination regulator RecX; Provisional
Probab=28.07 E-value=3.6e+02 Score=26.28 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 018556 263 KLPLDVIKNDLKSAGMSEAAIEELLRV 289 (354)
Q Consensus 263 ~~~~~~i~~~L~~~g~s~~~~~~L~~l 289 (354)
+.....|+..|.+.|++.+.++..++.
T Consensus 225 kkGp~rIrqELrQKGId~eLIEqALee 251 (309)
T PRK14136 225 RVGSARIVSELKRHAVGDALVESVGAQ 251 (309)
T ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 345667889999999999888876653
No 137
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=27.15 E-value=2e+02 Score=27.48 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCCeEEEEecceeecCCCCCC----cccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCC
Q 018556 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~G----r~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~ 223 (354)
+.|.+.+|+.++.|....+-| |.-.++|.-+=+ .+++.. +-.+..++|+.+||+
T Consensus 43 pepw~vaYVqPsrRP~DGRYGeNPNRLq~y~QfQVil--KPsP~n---iq~lYL~SL~~lGId 100 (284)
T PF02091_consen 43 PEPWNVAYVQPSRRPTDGRYGENPNRLQHYYQFQVIL--KPSPDN---IQELYLESLEALGID 100 (284)
T ss_dssp SS-EEEEEEEEEE-GGG--TTTSSS--SEEEEEEEEE--ES--TT---HHHHHHHHHHHCT--
T ss_pred CCCccccccccCCCCCCCccCCCchHhhhhheeEEEE--cCCCcc---HHHHHHHHHHHhCCC
Confidence 579999999999997643333 667788876543 333332 456889999999985
No 138
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=24.58 E-value=44 Score=37.33 Aligned_cols=108 Identities=12% Similarity=0.151 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccc---hHHhhhhhhhhhccccEEeecC--CCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLES---EALFIRKAGEEIRDQLYCFEDR--GNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~---~~~~~~~~g~~~~~~l~~f~D~--~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
...+++.+.+.|+++|...|.+..+-+ -|++-. ...|+.|.+- +|.. .|
T Consensus 58 ~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft------~Agm~~Fkp~f~~G~~---~p----------------- 111 (902)
T TIGR03683 58 LDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLT------IASIADFQPWVTSGLV---PP----------------- 111 (902)
T ss_pred HHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEe------ecchhhhhHhhcCCCC---CC-----------------
Confidence 467889999999999999998754444 234332 2335544421 1221 11
Q ss_pred CCCeEEEEecceeecC-CCCCC---c-ccceEEeeeeEeccCChhh--HHHHHHHHHHHHHHhcCCC
Q 018556 165 SLPLKWFAVGQCWRYE-RMTRG---R-RREHYQWNMDIIGVPAVTA--EAELISSIITFFKRIGITA 224 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e-~~~~G---r-~rEf~Q~g~Ei~g~~~~~a--DaEvi~l~~e~l~~lgl~~ 224 (354)
.--|+....+|.|-+ -..-| | .--|-+.|=..||.++... -.|.|..++++|+.||++.
T Consensus 112 -p~~r~~~sQkCiR~nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l~~lgi~~ 177 (902)
T TIGR03683 112 -PANPLVISQPCIRLNDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLEELGIDP 177 (902)
T ss_pred -CCCCceeccccccccccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHHHHcCCCH
Confidence 112444555555543 11122 2 2334556777777544322 2689999999997799864
No 139
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=24.47 E-value=2.3e+02 Score=29.05 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCCceEEEecCC
Q 018556 303 VADLKLLFSLAEKFGYSDWIQFDASV 328 (354)
Q Consensus 303 l~~L~~l~~~l~~~g~~~~i~~Dlsl 328 (354)
++.+.++.+.+.+.|+ ..+.+|++.
T Consensus 211 l~~L~~lv~~~~~~GI-~dIILDPg~ 235 (450)
T PRK04165 211 LEELKELVEKLQAAGI-KDLVLDPGT 235 (450)
T ss_pred HHHHHHHHHHHHHcCC-CcEEECCCC
Confidence 6778888888888888 458899865
No 140
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=23.97 E-value=5.3e+02 Score=27.57 Aligned_cols=131 Identities=13% Similarity=0.133 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHCCCeEecCCcccchH---HhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCCC
Q 018556 91 NWLFHNFQEVSRLFGFEEVDFPVLESEA---LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (354)
Q Consensus 91 ~~i~~~l~~vf~~~Gy~eI~tP~le~~~---~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~P 167 (354)
..|++.+.+.|+++|...+.+..+-+.+ ++-. ...|..|. .++.... .+.-
T Consensus 4 ~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllft------nAGm~~fk------------------~~f~G~~--~p~~ 57 (594)
T PRK01584 4 DELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFT------TAGMHPLV------------------PYLLGEP--HPSG 57 (594)
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeee------ccchhhhh------------------HHhcCCC--CCCC
Confidence 5688999999999999999876555532 1111 12233332 2221111 1111
Q ss_pred eEEEEecceeecC-CCCCCcccceEEeeeeEeccCChh--hHHHHHHHHHHHHHH---hcCCCCcEEEEeC--------C
Q 018556 168 LKWFAVGQCWRYE-RMTRGRRREHYQWNMDIIGVPAVT--AEAELISSIITFFKR---IGITASDVGFRIS--------S 233 (354)
Q Consensus 168 lR~~y~g~VfR~e-~~~~Gr~rEf~Q~g~Ei~g~~~~~--aDaEvi~l~~e~l~~---lgl~~~~~~i~lg--------h 233 (354)
-|+....+|.|-. -..-|..| +..-+|.+|.-+-- =-.|.|..++|++.+ +|++...+-+.+- +
T Consensus 58 ~r~~~~QkCiR~~Dle~VG~~r--HhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~~~~D 135 (594)
T PRK01584 58 TRLVDVQKCLRTGDIDEVGDLS--HLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEEIPRD 135 (594)
T ss_pred CCccccccccccccccccCCCc--chhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCCCCCC
Confidence 3555566666653 22234322 33456666664432 236899999999964 8987655444433 2
Q ss_pred HHHHHHHHHHCCCChhh
Q 018556 234 RKVLQEVLRCHSIPEHL 250 (354)
Q Consensus 234 ~~il~~il~~~gl~~~~ 250 (354)
.. -..++..+|+|++.
T Consensus 136 ~E-a~~iW~~~g~~~~r 151 (594)
T PRK01584 136 EE-TASVWESLGIPKDR 151 (594)
T ss_pred HH-HHHHHHHcCCCHHH
Confidence 22 22344447777653
No 141
>PHA03373 tegument protein; Provisional
Probab=23.12 E-value=2.8e+02 Score=25.78 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=39.1
Q ss_pred cceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHHCC
Q 018556 188 REHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHS 245 (354)
Q Consensus 188 rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~~g 245 (354)
|.-.+.+.+++..+....-+|+-..+.+-|+.||+...|+.=-..+....+-+|.-+.
T Consensus 16 ~~~~~a~Y~lL~~sedve~~eL~~flee~f~~lGit~~Di~~~~rDtEv~khLL~LLP 73 (247)
T PHA03373 16 RAPDGAEYVLLRPSEDVELAELEAFLEENFKDFGITQADIRSLSRDTEVVKHLLQLLP 73 (247)
T ss_pred cCCCCCceEEecCcchhhHHHHHHHHHHhHHhcCcCHHHHHHHhhhhHHHHHHHHHhH
Confidence 3445566777776555455788888999999999976665333456666666666554
No 142
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.85 E-value=2.8e+02 Score=31.00 Aligned_cols=134 Identities=14% Similarity=0.149 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccch-H--HhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCC
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESE-A--LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~-~--~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~ 166 (354)
-..|++.+.+.|++.|...+.+..+-+. | ++.. ...|+.|.+- +... .. +.
T Consensus 8 ~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLft------nAGm~~FK~~------------------f~g~-v~-p~ 61 (879)
T COG0013 8 TNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFT------NAGMVQFKPY------------------FTGG-VT-PP 61 (879)
T ss_pred HHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEe------ecccccchhh------------------hcCC-CC-CC
Confidence 3568899999999999999987555453 1 2211 3345555431 1111 11 22
Q ss_pred CeEEEEecceeecCC-CCCCcccceEEeeeeEeccCChhh--HHHHHHHHHHHH-HHhcCCCCcEEEEeCC--HHHHHHH
Q 018556 167 PLKWFAVGQCWRYER-MTRGRRREHYQWNMDIIGVPAVTA--EAELISSIITFF-KRIGITASDVGFRISS--RKVLQEV 240 (354)
Q Consensus 167 PlR~~y~g~VfR~e~-~~~Gr~rEf~Q~g~Ei~g~~~~~a--DaEvi~l~~e~l-~~lgl~~~~~~i~lgh--~~il~~i 240 (354)
+-|.....+|-|-+. ..-|+- -.+..-||.+|.-+.-. -.|.|..++++| +.||++...+.+.+=+ -...+.-
T Consensus 62 ~~r~~~sQkcIR~NDieNVG~T-~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W 140 (879)
T COG0013 62 ANRAVTSQKCIRTNDIDNVGYT-ARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEW 140 (879)
T ss_pred CCCeeccccccccCchhhcCcc-ccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEecCchHHHHHH
Confidence 237777777777641 123321 12334556666544332 258999999999 7899986665555433 3333333
Q ss_pred HHHCCCChhh
Q 018556 241 LRCHSIPEHL 250 (354)
Q Consensus 241 l~~~gl~~~~ 250 (354)
.+.+|+|++.
T Consensus 141 ~~~~gip~~r 150 (879)
T COG0013 141 EKIIGIPPER 150 (879)
T ss_pred HhhcCCCHHH
Confidence 3556777653
No 143
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=22.30 E-value=2.5e+02 Score=23.19 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHCCCChhh-------HhHHHHHHHHhccCCHHHHHHHHHHcCCCH
Q 018556 232 SSRKVLQEVLRCHSIPEHL-------FGKVCIIIDKIEKLPLDVIKNDLKSAGMSE 280 (354)
Q Consensus 232 gh~~il~~il~~~gl~~~~-------~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~ 280 (354)
+-..+++..++.+|++... +..+.+++.++...+.+-+++.-+..|++.
T Consensus 60 ~pve~I~t~Md~~glt~~dLa~~iGSks~vS~iL~~rraLTle~ikkL~q~~gIpa 115 (120)
T COG5499 60 DPVEVIRTLMDQYGLTLADLANEIGSKSRVSNILSGRRALTLEHIKKLHQRFGIPA 115 (120)
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHhCchHHHHHHHhhhhHhhHHHHHHHHHHhCcCH
Confidence 3456777777777765433 223334444444444444444334445443
No 144
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=21.43 E-value=4.1e+02 Score=21.43 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHH
Q 018556 206 EAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEE 285 (354)
Q Consensus 206 DaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~ 285 (354)
+.|+|.-+.+-|.+.|. ||+..+....+... + +....+...|+..|...|++.+.++.
T Consensus 7 ~~e~I~~vi~~l~~~gy--------idD~~ya~~~v~~~-------------~-~~~~~G~~~I~~~L~~kGi~~~~i~~ 64 (121)
T PF02631_consen 7 SEEAIEEVIDRLKELGY--------IDDERYAESYVRSR-------------L-RRKGKGPRRIRQKLKQKGIDREIIEE 64 (121)
T ss_dssp -HHHHHHHHHHHHHTTS--------S-HHHHHHHHHHHH-------------H-HHTT--HHHHHHHHHHTT--HHHHHH
T ss_pred CHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHh-------------c-ccccccHHHHHHHHHHHCCChHHHHH
Confidence 44566666666666664 45655555444322 1 11234555778888888988887776
Q ss_pred HHH
Q 018556 286 LLR 288 (354)
Q Consensus 286 L~~ 288 (354)
.++
T Consensus 65 ~l~ 67 (121)
T PF02631_consen 65 ALE 67 (121)
T ss_dssp HHT
T ss_pred HHH
Confidence 655
No 145
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=21.33 E-value=1.4e+02 Score=29.95 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCC-ceEEEecCCC---CCCC
Q 018556 303 VADLKLLFSLAEKFGYS-DWIQFDASVV---RGLA 333 (354)
Q Consensus 303 l~~L~~l~~~l~~~g~~-~~i~~Dlslv---r~l~ 333 (354)
++.+.++-..|.++|++ +.|.+|++.. +|+.
T Consensus 251 in~ak~Ln~kL~~~Gv~~eDIVlDP~t~alG~Gie 285 (389)
T TIGR00381 251 INMQKTLNRYLLKRGLMPRDIVMDPTTCALGYGIE 285 (389)
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEcCCCccccCCHH
Confidence 45555666667788887 2488999863 4554
No 146
>PLN03173 chalcone synthase; Provisional
Probab=21.15 E-value=4.7e+02 Score=26.11 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcCCCCc---EEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHh
Q 018556 207 AELISSIITFFKRIGITASD---VGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKI 261 (354)
Q Consensus 207 aEvi~l~~e~l~~lgl~~~~---~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~ 261 (354)
..+-..+.++|++.|+...+ |.++=++..+++++.+.+|+++++...-...+++.
T Consensus 277 ~~~~~~i~~~L~~~gl~~~di~~~v~Hqgg~~Il~~v~~~LgL~~ekl~~s~~vl~~y 334 (391)
T PLN03173 277 KNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLALKPEKLRATRHVLSEY 334 (391)
T ss_pred HHHHHHHHHHHHhcCCCccccCeEEECCCcHHHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence 34555677888888864333 55667889999999999999987654433334443
No 147
>PLN03172 chalcone synthase family protein; Provisional
Probab=20.24 E-value=4.8e+02 Score=26.10 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCCCc---EEEEeCCHHHHHHHHHHCCCChhhHh
Q 018556 208 ELISSIITFFKRIGITASD---VGFRISSRKVLQEVLRCHSIPEHLFG 252 (354)
Q Consensus 208 Evi~l~~e~l~~lgl~~~~---~~i~lgh~~il~~il~~~gl~~~~~~ 252 (354)
.+-..+.++|++.|+...+ |.++=++.++++.+.+.+|+++++..
T Consensus 278 ~i~~~~~~~L~~~gl~~~di~~~~~Hqgg~~Il~~v~~~Lgl~~~~~~ 325 (393)
T PLN03172 278 NIEKSLVEAFAPIGINDWNSIFWIAHPGGPAILDQVEIKLDLKEEKLR 325 (393)
T ss_pred HHHHHHHHHhhhcCCCccccceEEecCCcHHHHHHHHHHcCCCHHHHH
Confidence 3445666777777764333 55677889999999999999987544
Done!