Query 018556
Match_columns 354
No_of_seqs 203 out of 1571
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lc0_A Histidyl-tRNA synthetas 100.0 9E-59 3.1E-63 466.9 32.9 288 65-352 21-314 (456)
2 3od1_A ATP phosphoribosyltrans 100.0 3.6E-56 1.2E-60 441.2 31.5 272 71-348 8-291 (400)
3 3net_A Histidyl-tRNA synthetas 100.0 1.3E-55 4.3E-60 445.5 29.3 274 67-347 6-318 (465)
4 3rac_A Histidine-tRNA ligase; 100.0 1.5E-54 5.3E-59 425.9 23.8 273 72-348 22-327 (373)
5 1z7m_A ATP phosphoribosyltrans 100.0 5.5E-54 1.9E-58 418.0 26.6 269 66-347 15-297 (344)
6 4g85_A Histidine-tRNA ligase, 100.0 5.2E-53 1.8E-57 431.6 31.1 276 66-347 60-354 (517)
7 4g84_A Histidine--tRNA ligase, 100.0 8.7E-53 3E-57 423.8 30.5 276 66-347 7-301 (464)
8 1wu7_A Histidyl-tRNA synthetas 100.0 6.4E-51 2.2E-55 407.6 31.9 274 71-350 4-285 (434)
9 4e51_A Histidine--tRNA ligase; 100.0 3.3E-45 1.1E-49 369.5 26.2 265 70-348 29-304 (467)
10 1h4v_B Histidyl-tRNA synthetas 100.0 7.1E-44 2.4E-48 354.9 29.4 263 72-346 2-275 (421)
11 1htt_A Histidyl-tRNA synthetas 100.0 9.4E-45 3.2E-49 361.5 23.0 261 72-346 3-274 (423)
12 1usy_A ATP phosphoribosyltrans 100.0 8.7E-45 3E-49 343.1 20.5 232 92-347 5-246 (275)
13 1qe0_A Histidyl-tRNA synthetas 100.0 4.3E-40 1.5E-44 327.4 18.5 262 73-346 2-273 (420)
14 2j3l_A Prolyl-tRNA synthetase; 100.0 4.1E-30 1.4E-34 265.3 17.4 189 48-241 4-206 (572)
15 3a32_A Probable threonyl-tRNA 100.0 7.5E-32 2.6E-36 272.3 -1.3 156 75-234 37-209 (471)
16 2i4l_A Proline-tRNA ligase; al 100.0 5.2E-29 1.8E-33 250.8 11.4 188 48-242 24-227 (458)
17 1evl_A Threonyl-tRNA synthetas 99.9 1.9E-26 6.4E-31 228.3 16.5 158 73-235 16-183 (401)
18 1nyr_A Threonyl-tRNA synthetas 99.9 8.7E-27 3E-31 243.6 12.6 157 75-234 259-425 (645)
19 1hc7_A Prolyl-tRNA synthetase; 99.9 7.4E-26 2.5E-30 228.7 15.0 161 70-233 27-200 (477)
20 1nj8_A Proline-tRNA synthetase 99.9 2.5E-25 8.6E-30 223.9 16.8 161 70-233 20-195 (459)
21 1qf6_A THRRS, threonyl-tRNA sy 99.9 6.6E-24 2.2E-28 221.5 16.1 156 74-234 258-423 (642)
22 1nj1_A PROR, proline-tRNA synt 99.9 4.8E-23 1.6E-27 209.3 16.0 159 71-233 54-227 (501)
23 3uh0_A Threonyl-tRNA synthetas 99.9 6.2E-23 2.1E-27 206.4 15.8 148 74-223 51-212 (460)
24 3ial_A Prolyl-tRNA synthetase; 99.9 8.9E-22 3.1E-26 199.7 14.6 154 70-223 37-205 (518)
25 4hvc_A Bifunctional glutamate/ 99.8 1.7E-20 5.8E-25 190.6 16.2 154 70-223 44-211 (519)
26 2zt5_A Glycyl-tRNA synthetase; 99.8 2.3E-20 8E-25 195.6 13.4 151 76-230 90-376 (693)
27 1ati_A Glycyl-tRNA synthetase; 99.8 1.1E-19 3.6E-24 184.8 14.3 147 75-224 27-271 (505)
28 2dq3_A Seryl-tRNA synthetase; 99.8 2.1E-19 7E-24 179.0 12.8 144 76-223 161-316 (425)
29 1ses_A Seryl-tRNA synthetase; 99.8 3.9E-18 1.3E-22 169.5 13.6 144 76-223 155-312 (421)
30 2dq0_A Seryl-tRNA synthetase; 99.7 1.3E-17 4.6E-22 167.0 12.9 152 75-233 181-344 (455)
31 3dsq_A Pyrrolysyl-tRNA synthet 99.7 1.9E-17 6.5E-22 156.9 13.1 139 89-230 72-210 (288)
32 2cja_A Seryl-tRNA synthetase; 99.7 4.9E-17 1.7E-21 164.9 10.1 147 75-223 219-407 (522)
33 3vbb_A Seryl-tRNA synthetase, 99.6 8.2E-15 2.8E-19 148.0 13.5 147 76-223 190-358 (522)
34 3qtc_A Pyrrolysyl-tRNA synthet 99.6 2.1E-14 7.3E-19 136.0 15.5 127 90-223 79-209 (290)
35 1wle_A Seryl-tRNA synthetase; 99.6 8.4E-15 2.9E-19 148.0 13.2 146 77-223 209-368 (501)
36 3lss_A Seryl-tRNA synthetase; 99.5 6.4E-14 2.2E-18 140.6 14.8 146 76-223 197-356 (484)
37 3qne_A Seryl-tRNA synthetase, 99.5 7.1E-14 2.4E-18 140.1 13.9 146 76-223 174-333 (485)
38 3err_A Fusion protein of micro 99.5 1.4E-13 4.8E-18 140.3 13.9 144 76-223 264-421 (536)
39 1nnh_A Asparaginyl-tRNA synthe 99.4 4E-12 1.4E-16 120.6 12.6 126 83-221 11-141 (294)
40 1g5h_A Mitochondrial DNA polym 99.2 4E-12 1.4E-16 127.5 4.7 151 78-228 52-232 (454)
41 1x54_A Asparaginyl-tRNA synthe 99.2 6E-11 2.1E-15 118.2 11.7 115 85-220 133-250 (434)
42 3mf2_A BLL0957 protein; aminoa 99.1 4E-10 1.4E-14 108.0 13.4 148 77-231 54-232 (346)
43 1n9w_A Aspartyl-tRNA synthetas 99.1 1.3E-10 4.4E-15 115.4 9.0 116 85-220 123-241 (422)
44 1wyd_A Hypothetical aspartyl-t 99.1 5.8E-10 2E-14 110.9 13.3 114 86-220 133-249 (429)
45 3ikl_A DNA polymerase subunit 99.1 3.1E-10 1.1E-14 113.2 10.9 139 77-230 93-244 (459)
46 1eov_A ASPRS, aspartyl-tRNA sy 98.9 6.5E-09 2.2E-13 105.0 13.2 113 86-218 177-293 (487)
47 3a74_A Lysyl-tRNA synthetase; 98.8 3.5E-08 1.2E-12 99.6 13.5 116 86-220 173-291 (493)
48 3l4g_A Phenylalanyl-tRNA synth 98.8 8.2E-08 2.8E-12 96.7 14.1 135 87-223 224-401 (508)
49 1e1o_A Lysyl-tRNA synthetase, 98.6 2.8E-07 9.6E-12 93.3 13.9 117 86-219 182-299 (504)
50 2du3_A O-phosphoseryl-tRNA syn 98.6 1.8E-07 6.2E-12 94.7 12.0 80 142-223 180-260 (534)
51 3a5y_A GENX, putative lysyl-tR 98.6 3.8E-07 1.3E-11 88.1 12.6 121 84-220 33-158 (345)
52 1b7y_A Phers, protein (phenyla 98.5 1.9E-06 6.3E-11 83.4 15.9 128 89-222 102-247 (350)
53 2xgt_A Asparaginyl-tRNA synthe 98.4 1.8E-06 6.2E-11 85.9 12.8 113 86-219 131-246 (435)
54 2du7_A O-phosphoseryl-tRNA syn 98.4 2.9E-06 1E-10 85.9 14.0 132 89-222 58-271 (549)
55 2rhq_A Phenylalanyl-tRNA synth 98.3 6E-06 2.1E-10 78.0 13.6 145 68-222 35-186 (294)
56 3nem_A Aspartyl-tRNA synthetas 98.3 6.1E-06 2.1E-10 82.1 12.7 102 86-201 136-238 (438)
57 2odr_B Phosphoseryl-tRNA synth 98.3 2.5E-05 8.5E-10 80.0 17.1 131 90-222 67-278 (648)
58 2odr_A Phosphoseryl-tRNA synth 98.3 2.6E-05 8.8E-10 80.0 17.1 131 90-222 67-278 (665)
59 2odr_D Phosphoseryl-tRNA synth 98.2 2.7E-05 9.1E-10 80.0 17.1 131 90-222 67-278 (685)
60 2odr_C Phosphoseryl-tRNA synth 98.2 2.9E-05 9.9E-10 79.9 16.9 131 90-222 67-278 (701)
61 3m4p_A Ehasnrs, asparaginyl-tR 98.1 2.3E-05 7.7E-10 78.4 12.6 100 87-201 156-256 (456)
62 1l0w_A Aspartyl-tRNA synthetas 98.0 3.6E-05 1.2E-09 79.1 13.4 101 87-201 144-246 (580)
63 1c0a_A Aspartyl tRNA synthetas 98.0 3.9E-05 1.3E-09 79.0 13.6 99 87-201 138-240 (585)
64 3ica_A Phenylalanyl-tRNA synth 98.0 9.5E-05 3.2E-09 66.4 14.1 141 89-230 5-161 (213)
65 3ig2_A Phenylalanyl-tRNA synth 98.0 8E-05 2.7E-09 66.9 13.6 133 90-223 6-154 (213)
66 3bju_A Lysyl-tRNA synthetase; 98.0 6.1E-05 2.1E-09 76.5 14.0 103 86-201 175-278 (521)
67 4ex5_A Lysine--tRNA ligase; st 98.0 6.7E-05 2.3E-09 76.1 14.0 103 86-201 203-306 (529)
68 3l4g_B Phenylalanyl-tRNA synth 97.9 0.00013 4.4E-09 75.2 13.9 150 67-223 373-525 (589)
69 3i7f_A Aspartyl-tRNA synthetas 97.9 9.1E-05 3.1E-09 75.4 12.1 100 86-199 243-344 (548)
70 4ah6_A Aspartate--tRNA ligase, 97.8 0.00019 6.4E-09 74.0 13.8 115 87-219 148-264 (617)
71 2rhq_B Phenylalanyl-tRNA synth 97.7 0.00018 6E-09 76.7 12.3 150 67-222 473-634 (795)
72 3pco_A Phenylalanyl-tRNA synth 97.6 9.2E-05 3.1E-09 70.8 6.6 138 70-220 91-234 (327)
73 1b7y_B Phers, protein (phenyla 97.3 0.0011 3.8E-08 70.4 11.7 144 67-222 468-622 (785)
74 3cmq_A Phenylalanyl-tRNA synth 97.1 0.0032 1.1E-07 62.0 11.7 99 89-198 49-164 (415)
75 3pco_B Phenylalanyl-tRNA synth 96.0 0.034 1.2E-06 59.1 11.3 127 93-222 494-630 (795)
76 12as_A Asparagine synthetase; 35.0 2.9E+02 0.0098 25.8 12.5 108 89-202 7-126 (330)
77 2jvf_A De novo protein M7; tet 34.0 55 0.0019 23.7 4.3 33 200-234 56-88 (96)
78 3fia_A Intersectin-1; EH 1 dom 31.4 1.2E+02 0.004 24.1 6.4 49 245-293 26-78 (121)
79 1c07_A Protein (epidermal grow 29.8 1.1E+02 0.0037 22.3 5.7 48 246-293 4-56 (95)
80 1eh2_A EPS15; calcium binding, 27.8 2E+02 0.0067 21.7 7.2 48 246-293 9-60 (106)
81 4fp9_B Mterf domain-containing 27.6 1.2E+02 0.0041 28.4 6.8 15 271-285 83-97 (335)
82 3mva_O Transcription terminati 25.2 86 0.0029 29.1 5.3 17 304-320 121-137 (343)
83 2l9s_A PHD finger protein 12; 24.1 14 0.00049 24.3 -0.3 32 4-35 6-37 (45)
84 1evl_A Threonyl-tRNA synthetas 23.8 28 0.00096 33.2 1.7 18 324-341 225-244 (401)
85 1fi6_A EH domain protein REPS1 22.7 1.8E+02 0.0063 20.8 5.8 47 247-293 4-55 (92)
86 1j5w_A Glycyl-tRNA synthetase 22.2 2E+02 0.0068 26.2 6.7 55 165-224 57-115 (298)
87 3rf1_A Glycyl-tRNA synthetase 21.4 2.1E+02 0.0073 26.2 6.8 54 165-223 69-126 (311)
No 1
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=9e-59 Score=466.93 Aligned_cols=288 Identities=50% Similarity=0.926 Sum_probs=259.0
Q ss_pred CcccccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEe
Q 018556 65 SDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVA 144 (354)
Q Consensus 65 ~~~~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~ 144 (354)
.+.+.|+.+++|+|++|++|.++++++++++.++++|++|||++|.||+||+.++|.+++|++..++||+|.|++|+.++
T Consensus 21 ~~~~~m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~ 100 (456)
T 3lc0_A 21 SMQKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVA 100 (456)
T ss_dssp ----CCCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEE
T ss_pred chhhccccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEe
Confidence 35666788999999999999999999999999999999999999999999999999877788778899999999999999
Q ss_pred eCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCC
Q 018556 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224 (354)
Q Consensus 145 LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~ 224 (354)
||||+|+++||+++++....++|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|||.++.++++.+|+.+
T Consensus 101 LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl~~ 180 (456)
T 3lc0_A 101 LRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSS 180 (456)
T ss_dssp ECSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTCCT
T ss_pred cCCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCCCC
Confidence 99999999999999987666789999999999999999999999999999999999999999999999999999999942
Q ss_pred CcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCChhhHH-----
Q 018556 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELE----- 299 (354)
Q Consensus 225 ~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~l~~l~----- 299 (354)
.+++|+|||+++++++|+.+|++++.+..++.++|++++.+++++++.|.+++++++.+++|+++++...++.+.
T Consensus 181 ~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~ 260 (456)
T 3lc0_A 181 KDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGE 260 (456)
T ss_dssp TTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHHHHCT
T ss_pred CceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHHHhH
Confidence 379999999999999999999999999999999999999999999999999999999999999988876654432
Q ss_pred -HHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCCcccc
Q 018556 300 -GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWGW 352 (354)
Q Consensus 300 -~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~~~~~ 352 (354)
.+++++|++++++|+.+|+.+++.|||+++||++||||+|||+|.+++...+|
T Consensus 261 ~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I 314 (456)
T 3lc0_A 261 EHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRAL 314 (456)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceE
Confidence 45799999999999999998889999999999999999999999876544444
No 2
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=3.6e-56 Score=441.22 Aligned_cols=272 Identities=24% Similarity=0.392 Sum_probs=246.7
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCc
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T 150 (354)
+.+++|+|++|++|.++++++++++.++++|++|||++|.||+||+.++|..+ |....++||+|.|++|+.++||||+|
T Consensus 8 ~~~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~-g~~~~~~my~f~D~~g~~l~LRpd~T 86 (400)
T 3od1_A 8 FMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVV-SAILDQQLFKLLDQQGNTLVLRPDMT 86 (400)
T ss_dssp CTTCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHH-SSSCGGGSCEEECTTSCEEEECSCSH
T ss_pred hcccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-CCccccceEEEECCCCCEEEECCCCH
Confidence 55799999999999999999999999999999999999999999999999865 66678899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q 018556 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (354)
Q Consensus 151 ~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~ 230 (354)
+++||+++++....+.|+|+||+|+|||+++|+.||.|||+|+|+|+||.+++.+|+|||.++.++++.+|++ +++|+
T Consensus 87 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~--~~~i~ 164 (400)
T 3od1_A 87 APIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLS--EFKVA 164 (400)
T ss_dssp HHHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCC--SEEEE
T ss_pred HHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCC--ceEEE
Confidence 9999999998766688999999999999999999999999999999999999999999999999999999997 79999
Q ss_pred eCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCC----hh--------hH
Q 018556 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS----LT--------EL 298 (354)
Q Consensus 231 lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~----l~--------~l 298 (354)
|||+++++++++.+|++++.+.+++.+++++++ .++++.+++.+++++..+.|..++.+.+ ++ ..
T Consensus 165 l~~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~~---~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~l~~~~~ 241 (400)
T 3od1_A 165 IGHVGYVNALLMDVVGNEQRADRLRRFLYEKNY---VGYREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQTEK 241 (400)
T ss_dssp EEEHHHHHHHHHHHHCCHHHHHHHHHHHHTTCH---HHHHHHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHHTTCCSHH
T ss_pred ecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCh---hHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHHhhhcChh
Confidence 999999999999999999999999999988764 4566778888999999999988886642 11 23
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCC
Q 018556 299 EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESN 348 (354)
Q Consensus 299 ~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~ 348 (354)
..+++++|++++++|+.+|+.++++||++++||++||||+|||+|.++.+
T Consensus 242 ~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~~~~g 291 (400)
T 3od1_A 242 GKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRLG 291 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEETTCS
T ss_pred hHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEECCCC
Confidence 37889999999999999999888999999999999999999999998754
No 3
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=1.3e-55 Score=445.50 Aligned_cols=274 Identities=26% Similarity=0.457 Sum_probs=238.9
Q ss_pred ccccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccc-cEEeecC-------
Q 018556 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQ-LYCFEDR------- 138 (354)
Q Consensus 67 ~~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~-l~~f~D~------- 138 (354)
++.+++.++|+||+|++|.++++++++++.++++|++|||++|.||+||+.++|..+ | +..++ ||+|.|+
T Consensus 6 ~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G-~~~ke~m~~~~d~~~~g~~~ 83 (465)
T 3net_A 6 KNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G-NQGDNIIYGLEPILPPNRQA 83 (465)
T ss_dssp ---CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G-CC--CBEEEEEEEC------
T ss_pred CCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C-CCCccceEEEeccccccccc
Confidence 455678899999999999999999999999999999999999999999999999987 7 45677 9999998
Q ss_pred --------CCCeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhh--HHH
Q 018556 139 --------GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTA--EAE 208 (354)
Q Consensus 139 --------~G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~a--DaE 208 (354)
+|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+ |+|
T Consensus 84 ~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaE 163 (465)
T 3net_A 84 EKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ 163 (465)
T ss_dssp ----------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHH
T ss_pred ccccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHH
Confidence 3899999999999999999998765678999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018556 209 LISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLR 288 (354)
Q Consensus 209 vi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~ 288 (354)
||.++.++|+.+|++ +++|+|||+++++++++.+|++++++..++.+||++++.+++++++.|.+.|++.+..+.+.+
T Consensus 164 vi~l~~~~l~~lgl~--~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~ 241 (465)
T 3net_A 164 MPAIITEIFEAVNIG--DFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIID 241 (465)
T ss_dssp HHHHHHHHHHHHTCS--CEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--ceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999997 799999999999999999999998889999999999999999999999999999999999998
Q ss_pred hhcCCC-----hhh---H---------HHHHHHHHHHHHHHHHHcCCCce----EEEecCCCCCCCCccceeEEEEECCC
Q 018556 289 VLSIKS-----LTE---L---------EGEAVADLKLLFSLAEKFGYSDW----IQFDASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 289 l~~~~~-----l~~---l---------~~~al~~L~~l~~~l~~~g~~~~----i~~Dlslvr~l~YYTGivFe~~~~~~ 347 (354)
++.+.+ ++. + ..+++++|++++ |+.+ +... ++||++++||++||||+|||+|.++.
T Consensus 242 l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~--l~~~-~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~ 318 (465)
T 3net_A 242 FVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVI--TGVR-NLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGH 318 (465)
T ss_dssp HHTCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHHH-HTTCCGGGEEECTTCCCCSSSEEEEEEEEEETTC
T ss_pred HHHhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHH--HHHh-cccccCceEEEccCccCCCcccCceEEEEEECCC
Confidence 887643 121 1 156788888887 6665 5446 99999999999999999999999885
No 4
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=1.5e-54 Score=425.94 Aligned_cols=273 Identities=22% Similarity=0.259 Sum_probs=227.3
Q ss_pred cCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhc-cccEEeecCCCCeEeeCCCCc
Q 018556 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR-DQLYCFEDRGNRRVALRPELT 150 (354)
Q Consensus 72 ~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~-~~l~~f~D~~G~~l~LRpD~T 150 (354)
..++|+|++|++|.+++++++|++.++++|++|||++|.||+||+.++|..+ |+... ++||+|.|++|+.++||||+|
T Consensus 22 ~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~-g~~~~~~~my~~~D~~g~~l~LRpd~T 100 (373)
T 3rac_A 22 FADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRA-RSPESSRDWIRLFDGGGDAVALRPEMT 100 (373)
T ss_dssp CCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTT-SCTTSCCCCCBCCCCSSSCEEECSSSH
T ss_pred cCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhc-CCccchhceEEEECCCCCEEEECCcCH
Confidence 3489999999999999999999999999999999999999999999999874 55566 899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecceeecCCC------CCCcccceEEeeeeEeccC-ChhhHHHHHHHHHHHHHHhcCC
Q 018556 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERM------TRGRRREHYQWNMDIIGVP-AVTAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 151 ~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~------~~Gr~rEf~Q~g~Ei~g~~-~~~aDaEvi~l~~e~l~~lgl~ 223 (354)
+++||+++++....+.|+|+||+|+|||++++ +.||.|||+|+|+|+||.+ ++.+|+|+|.++.++|+.+|++
T Consensus 101 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~ 180 (373)
T 3rac_A 101 PSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVR 180 (373)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999876556789999999999999998 8999999999999999998 8999999999999999999997
Q ss_pred CCcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHH------------HHcCCC--------HHHH
Q 018556 224 ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL------------KSAGMS--------EAAI 283 (354)
Q Consensus 224 ~~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L------------~~~g~s--------~~~~ 283 (354)
+++|+|||+++++++++.+|++++.+.+++++++++++..++++.+.| +-.|.+ +...
T Consensus 181 --~~~i~l~~~~i~~~ll~~~g~~~~~~~~l~~~l~k~~~~~~~~~~~~l~~~~~~~l~~l~~l~g~~~~~~~~~~~~~~ 258 (373)
T 3rac_A 181 --HHRIVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQLHAAKDVDLLANLLTWSPAERDAAKRSREASD 258 (373)
T ss_dssp --SCEEEEEETTHHHHHHHHTTCCHHHHHHHHHHHHHTCHHHHHHHHHHHCSCCSCHHHHHHHBCCCSSCTTSBCHHHHH
T ss_pred --ceEEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhhHHHHHHhcCHHHHHHHHHHHHHhCCccccccccccccH
Confidence 799999999999999999999999999999999998776555544333 112210 0011
Q ss_pred HHHHHhhcCCChhhHH----HHHHHHHHHHHHHHHHcCC-CceEEEecCCCCCCCCccceeEEEEECCCC
Q 018556 284 EELLRVLSIKSLTELE----GEAVADLKLLFSLAEKFGY-SDWIQFDASVVRGLAYYTGIVFEGRKVESN 348 (354)
Q Consensus 284 ~~L~~l~~~~~l~~l~----~~al~~L~~l~~~l~~~g~-~~~i~~Dlslvr~l~YYTGivFe~~~~~~~ 348 (354)
+.+.++..+.. +... .+++++|++++++|+.+|+ .+.++||++++||++||||+|||+|.++.+
T Consensus 259 ~~l~~~~~l~~-~~~~~~~~~~al~~l~~l~~~L~~~gi~~~~i~~D~~lvRgldYYTG~vFe~~~~~~g 327 (373)
T 3rac_A 259 RELEALLRDAV-DPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYTGLVFEMFAPGVG 327 (373)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEECTTCCCSCTTCCSEEEEEECTTCS
T ss_pred HHHHHHHhhhc-CcccchhHHHHHHHHHHHHHHHHHcCCCCceEEEeCCccCCCCccCCeEEEEEECCCC
Confidence 11111211111 1122 6789999999999999999 677999999999999999999999998754
No 5
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=5.5e-54 Score=417.98 Aligned_cols=269 Identities=19% Similarity=0.288 Sum_probs=228.6
Q ss_pred cccccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhh---hhhhhhccccEEeecCCCCe
Q 018556 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR---KAGEEIRDQLYCFEDRGNRR 142 (354)
Q Consensus 66 ~~~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~---~~g~~~~~~l~~f~D~~G~~ 142 (354)
....++.+++|+|++|++|.++++++++++.++++|++|||++|.||+||+.++|.+ +.++...++||+|.|++|+.
T Consensus 15 ~~~~~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~ 94 (344)
T 1z7m_A 15 GRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQS 94 (344)
T ss_dssp -------CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCE
T ss_pred chhhhccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCE
Confidence 455667889999999999999999999999999999999999999999999999976 22335678999999999999
Q ss_pred EeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcC
Q 018556 143 VALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (354)
Q Consensus 143 l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl 222 (354)
++||||+|+++||+++++ ..+.|+|+||+|+|||+|+|+.||.|||+|+|+|+||.+++.+|+|+|.++.++|+++|+
T Consensus 95 l~LRpd~T~~~aR~~~~~--~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lgl 172 (344)
T 1z7m_A 95 ITLRYDFTLPLVRLYSQI--KDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGL 172 (344)
T ss_dssp EEECCCSHHHHHHHHHTC--CSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EecCCCCcHHHHHHHHhc--CCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999987 346899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCChh------
Q 018556 223 TASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLT------ 296 (354)
Q Consensus 223 ~~~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~l~------ 296 (354)
+ +++|+|||++++++++ |++++.+.+++++++++++. .+++.++..+++++..+.+.+++++.+.+
T Consensus 173 ~--~~~i~l~~~gi~~~~l---g~~~~~~~~l~~~l~~~~~~---~~~~~l~~~~l~~~~~~~l~~l~~~g~~~~l~~~~ 244 (344)
T 1z7m_A 173 N--KTVFEIGSAKFFQRLC---QLADGSTELLTELLLKKDLS---GLNAFIEKNNFSKELRGLLKEIFITNELSRLENLV 244 (344)
T ss_dssp S--SEEEEEEEHHHHHHHH---HHTTTCHHHHHHHHHTTCHH---HHHHHHTTSCCCHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred C--cEEEEECCHHHHHHHh---CCCHHHHHHHHHHHHhhCHH---HHHHHHHhcCCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7 7999999999999999 77788888999998887654 55667777889988888888887763211
Q ss_pred -----hHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCC
Q 018556 297 -----ELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 297 -----~l~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~ 347 (354)
....+++++|++++++|+.+| .++||++++||++||||+|||+|.++.
T Consensus 245 ~l~~~~~~~~~l~~l~~l~~~L~~~g---~~~~D~~lvrgldYYtG~vFe~~~~~~ 297 (344)
T 1z7m_A 245 TNTKDDVLISSFDQLKEFSEKLSMIK---PIIIDLGMVPKMDYYTDLMFKAYSSAA 297 (344)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTTS---CCEECTTCCCSSTTCCSEEEEEEETTE
T ss_pred HhhcchhhHHHHHHHHHHHHHHhhCC---CEEEeCCCCCCCccCCCeEEEEEECCC
Confidence 123688999999999999988 499999999999999999999998753
No 6
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=5.2e-53 Score=431.61 Aligned_cols=276 Identities=29% Similarity=0.535 Sum_probs=240.1
Q ss_pred cccccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEee
Q 018556 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVAL 145 (354)
Q Consensus 66 ~~~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~L 145 (354)
..++++.+++|+||+||+|.+++++++|++.++++|++|||++|.||+||+.++|.+++|+. .+.||+|.|++|+.++|
T Consensus 60 ~~~~~~~l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~-~~~my~f~D~~g~~l~L 138 (517)
T 4g85_A 60 ESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED-SKLIYDLKDQGGELLSL 138 (517)
T ss_dssp --CCCCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC-------CSCBBCCTTSCCEEE
T ss_pred ccccceeeeCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC-cceeEEEECCCCCEEEe
Confidence 45677899999999999999999999999999999999999999999999999998877765 67899999999999999
Q ss_pred CCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCC--CCCcccceEEeeeeEeccCC-hhhHHHHHHHHHHHHHHhcC
Q 018556 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVPA-VTAEAELISSIITFFKRIGI 222 (354)
Q Consensus 146 RpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~--~~Gr~rEf~Q~g~Ei~g~~~-~~aDaEvi~l~~e~l~~lgl 222 (354)
|||+|+|+||+++++. ..|+|+||+|+|||+|+| +.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.+|+
T Consensus 139 RPd~T~~~aR~~~~~~---~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl 215 (517)
T 4g85_A 139 RYDLTVPFARYLAMNK---LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI 215 (517)
T ss_dssp CSCSHHHHHHHHHHTT---CSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCC
T ss_pred CCcCcHHHHHHHHhCC---CCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999874 469999999999999988 56899999999999999755 46899999999999999999
Q ss_pred CCCcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHH-HHcCCCHHHHHHHHHhhcCCC-h---hh
Q 018556 223 TASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIKS-L---TE 297 (354)
Q Consensus 223 ~~~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L-~~~g~s~~~~~~L~~l~~~~~-l---~~ 297 (354)
. +++++|||+++++++++.+|++++.+..++.++|++++.+++++++.+ ...+++++.++.+..++...+ . +.
T Consensus 216 ~--~~~i~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 293 (517)
T 4g85_A 216 G--DFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQ 293 (517)
T ss_dssp C--CEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHH
T ss_pred C--cccccccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHH
Confidence 7 799999999999999999999999999999999999999999888765 578899998998888776542 1 11
Q ss_pred -----------HHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCC
Q 018556 298 -----------LEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 298 -----------l~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~ 347 (354)
...+++++|+.++++|+.+|+...|.||++++||++||||+|||++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~ 354 (517)
T 4g85_A 294 LLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQT 354 (517)
T ss_dssp HHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC--
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCc
Confidence 12578899999999999999998899999999999999999999997544
No 7
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.7e-53 Score=423.77 Aligned_cols=276 Identities=28% Similarity=0.525 Sum_probs=239.5
Q ss_pred cccccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEee
Q 018556 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVAL 145 (354)
Q Consensus 66 ~~~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~L 145 (354)
..+..+.+++|+||+||+|.+++++++|++.++++|++|||++|.||+||+.++|.+++|+. .++||+|.|++|+.++|
T Consensus 7 ~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~-~~~~y~f~D~~g~~l~L 85 (464)
T 4g84_A 7 ELRRQFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED-SKLIYDLKDQGGELLSL 85 (464)
T ss_dssp ------CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-----CCCBBCCCSSCCEEE
T ss_pred hHhhccceeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcC-cceeEEEECCCCCEEEe
Confidence 45556888999999999999999999999999999999999999999999999998877765 67899999999999999
Q ss_pred CCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCC--CCCcccceEEeeeeEeccCC-hhhHHHHHHHHHHHHHHhcC
Q 018556 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVPA-VTAEAELISSIITFFKRIGI 222 (354)
Q Consensus 146 RpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~--~~Gr~rEf~Q~g~Ei~g~~~-~~aDaEvi~l~~e~l~~lgl 222 (354)
|||+|+|+||+++++. ..|+|+||+|+|||+|+| +.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.+|+
T Consensus 86 RPd~T~~~aR~~~~~~---~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl 162 (464)
T 4g84_A 86 RYDLTVPFARYLAMNK---LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI 162 (464)
T ss_dssp CSCSHHHHHHHHHHTT---CSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTC
T ss_pred CCcCcHHHHHHHHhcC---CCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCC
Confidence 9999999999999874 469999999999999988 46799999999999999755 56899999999999999999
Q ss_pred CCCcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHH-HHcCCCHHHHHHHHHhhcCCC-h---h-
Q 018556 223 TASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIKS-L---T- 296 (354)
Q Consensus 223 ~~~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L-~~~g~s~~~~~~L~~l~~~~~-l---~- 296 (354)
+ ++.++|||+++++++++.++++++....++.+++++++.+++++++.+ ...+++++.++.+..++...+ . +
T Consensus 163 ~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 240 (464)
T 4g84_A 163 G--DFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQ 240 (464)
T ss_dssp C--CEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESHHHHHH
T ss_pred C--CcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHH
Confidence 7 799999999999999999999999999999999999999999888766 567889998888888776532 1 1
Q ss_pred ----------hHHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCC
Q 018556 297 ----------ELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 297 ----------~l~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~ 347 (354)
....+++++|+.++++|+.+|+...|.+|++++||++||||+|||++..+.
T Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~ 301 (464)
T 4g84_A 241 LLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQT 301 (464)
T ss_dssp HTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEEC
T ss_pred HHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCc
Confidence 112578999999999999999998899999999999999999999997443
No 8
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=6.4e-51 Score=407.64 Aligned_cols=274 Identities=37% Similarity=0.690 Sum_probs=248.6
Q ss_pred ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCc
Q 018556 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (354)
Q Consensus 71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T 150 (354)
+.+++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|..++|+...++||+|.|++|+.++||||+|
T Consensus 4 ~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t 83 (434)
T 1wu7_A 4 LQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEAT 83 (434)
T ss_dssp CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSH
T ss_pred cccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCCh
Confidence 45789999999999999999999999999999999999999999999999887787778899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCc-EEE
Q 018556 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASD-VGF 229 (354)
Q Consensus 151 ~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~-~~i 229 (354)
+++||+++++ ...++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.+++.+|+|+|.++.++|+++|++ + +.|
T Consensus 84 ~~~aR~~~~~-~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~--~~~~i 160 (434)
T 1wu7_A 84 PSTVRMVTSR-KDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQ--DIYEI 160 (434)
T ss_dssp HHHHHHHTTC-TTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTT--TSEEE
T ss_pred HHHHHHHHhc-CCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCC--CceEE
Confidence 9999999987 33368999999999999999999999999999999999999999999999999999999996 6 999
Q ss_pred EeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcC-CChhhHH------HHH
Q 018556 230 RISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSI-KSLTELE------GEA 302 (354)
Q Consensus 230 ~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~-~~l~~l~------~~a 302 (354)
++||+++++++++.+| ++++. .++.+++++++..+++++..|+..+++....+.+.+++.. ..+++++ .++
T Consensus 161 ~l~~~g~~~~~~~~~g-~~~~~-~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (434)
T 1wu7_A 161 RINSRKIMEEIIGGMT-SSDPF-SVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSEE 238 (434)
T ss_dssp EEEEHHHHHHHHHTTC-SSCHH-HHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHHHHTTCCCHH
T ss_pred EECChhhHHHHHHHhC-cHhHH-HHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHhhHHHH
Confidence 9999999999999887 77767 8899999999888988888899999998888888887754 3333354 488
Q ss_pred HHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCCcc
Q 018556 303 VADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLW 350 (354)
Q Consensus 303 l~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~~~ 350 (354)
+++++++.++++.+|+. .|.+|++++|+++||||++||+|..++..+
T Consensus 239 ~~~l~~~~~~l~~~g~~-~i~~D~~l~rgldYYtg~vFe~~~~~g~~~ 285 (434)
T 1wu7_A 239 IARMAAVEDLLASYGVK-NVRYDFSIVRGLSYYTGIVFEAYDRSGQFR 285 (434)
T ss_dssp HHHHHHHHHHHHHTTCC-CCEECTTCCTTTTTCSSEEEEEEETTSSCS
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCCcccCccccCCeEEEEEECCCCcC
Confidence 99999999999999997 799999999999999999999998754433
No 9
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=3.3e-45 Score=369.49 Aligned_cols=265 Identities=24% Similarity=0.368 Sum_probs=203.3
Q ss_pred cccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCC-CCeEee
Q 018556 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG-NRRVAL 145 (354)
Q Consensus 70 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~-G~~l~L 145 (354)
|.++++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.++.|+. ..++||+|.|++ |+.++|
T Consensus 29 ~~~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~L 108 (467)
T 4e51_A 29 LEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTL 108 (467)
T ss_dssp -CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEE
T ss_pred hcCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEe
Confidence 4578999999999999999999999999999999999999999999999998866772 468999999999 999999
Q ss_pred CCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCC
Q 018556 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITAS 225 (354)
Q Consensus 146 RpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~ 225 (354)
|||+|+++||+++++....++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.+++.+|+|+|.++.++|+.||++
T Consensus 109 RPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl~-- 186 (467)
T 4e51_A 109 RPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLT-- 186 (467)
T ss_dssp CSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTCC--
T ss_pred CcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHcCCC--
Confidence 999999999999988655578999999999999999999999999999999999999999999999999999999997
Q ss_pred cEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHh-ccCCHHHHHHHHHH-----cCC-CHHHHHHHHHhhcCCChhhH
Q 018556 226 DVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKI-EKLPLDVIKNDLKS-----AGM-SEAAIEELLRVLSIKSLTEL 298 (354)
Q Consensus 226 ~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~-~~~~~~~i~~~L~~-----~g~-s~~~~~~L~~l~~~~~l~~l 298 (354)
+++|+|||+++.+.. ...+..+...++.. ...+.+ .++.|.. +.. .....+.+.+.+.+ .+.+
T Consensus 187 ~~~i~in~~g~~~~~-------~~~~~~l~~~l~~~~~~l~~~-~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l--~~~l 256 (467)
T 4e51_A 187 GIKLEINSLGLAEER-------AAHRVELIKYLEQHADKLDDD-AQRRLYTNPLRVLDTKNPALQEIVRNAPKL--IDFL 256 (467)
T ss_dssp CEEEEEEECCCHHHH-------HHHHHHHHHHHHTTGGGCCHH-HHHHHTTCTHHHHTCCCGGGHHHHHTSCCG--GGGC
T ss_pred ceEEEEeCCCchhhh-------HHHHHHHHHHHHHHHhccCHH-HHHHHHhchHHHhhccchhHHHHHhhhHHH--HHhh
Confidence 799999997654321 01122222222211 111111 1111100 000 00001111111110 2334
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCC
Q 018556 299 EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESN 348 (354)
Q Consensus 299 ~~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~ 348 (354)
..++++++++|.++|+.+|+. +.+|++++||++||||+|||+|.++.+
T Consensus 257 ~~~~~~~l~~l~~~L~~~gi~--~~~d~~lvRgl~YYtg~vFe~~~~~~g 304 (467)
T 4e51_A 257 GDVSRAHFEGLQRLLKANNVP--FTINPRLVRGLDYYNLTVFEWVTDKLG 304 (467)
T ss_dssp CHHHHHHHHHHHHHHHHTTCC--EEECTTCCCSCTTCCSEEEEEEECC--
T ss_pred hHHHHHHHHHHHHHHHHcCCe--EEEcCccccCccccCCeEEEEEECCCC
Confidence 467889999999999999997 999999999999999999999998643
No 10
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=7.1e-44 Score=354.93 Aligned_cols=263 Identities=25% Similarity=0.409 Sum_probs=200.9
Q ss_pred cCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCCCCeEeeCCC
Q 018556 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPE 148 (354)
Q Consensus 72 ~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~G~~l~LRpD 148 (354)
.+++|+|++|++|.+++++++|++.++++|++|||++|.||+||+.++|..+.|++ ..++||+|.|++|+.++||||
T Consensus 2 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd 81 (421)
T 1h4v_B 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPE 81 (421)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCc
Confidence 46899999999999999999999999999999999999999999999998766763 467999999999999999999
Q ss_pred CcHHHHHHHHHhC-CCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcE
Q 018556 149 LTPSLARLVIQKG-KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (354)
Q Consensus 149 ~T~~iaR~~a~~~-~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~ 227 (354)
+|+++||+++++. ...++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.++..+|+|++.++.++|+++|++ ++
T Consensus 82 ~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~--~~ 159 (421)
T 1h4v_B 82 GTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLR--RL 159 (421)
T ss_pred chHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCCC--ce
Confidence 9999999999763 33478999999999999999999999999999999999999999999999999999999997 69
Q ss_pred EEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHh-ccCCHHHHHHHHHHc-----CCCHHHHHHHHHhhcCCCh-hhHHH
Q 018556 228 GFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKI-EKLPLDVIKNDLKSA-----GMSEAAIEELLRVLSIKSL-TELEG 300 (354)
Q Consensus 228 ~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~-~~~~~~~i~~~L~~~-----g~s~~~~~~L~~l~~~~~l-~~l~~ 300 (354)
.|++||.+..+... ..+..+...++.. ++.+ +...+.|... ....+....+++-++...+ +.+..
T Consensus 160 ~i~i~~~g~~~~~~-------~~~~~l~~~l~~~~~~l~-~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 231 (421)
T 1h4v_B 160 KVKLSSVGDPEDRA-------RYNAYLREVLSPHREALS-EDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGE 231 (421)
T ss_pred EEEEcCCCchhhHH-------HHHHHHHHHHHHHHhhcC-HHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhH
Confidence 99999976432210 0011111111110 0111 0111111111 1101111111110011111 12335
Q ss_pred HHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECC
Q 018556 301 EAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVE 346 (354)
Q Consensus 301 ~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~ 346 (354)
+++++++++.++++.+|+ .|.+|++++|+++||||++||+|..+
T Consensus 232 ~~~~~l~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~ 275 (421)
T 1h4v_B 232 EARAHLKEVERHLERLSV--PYELEPALVRGLDYYVRTAFEVHHEE 275 (421)
T ss_pred HHHHHHHHHHHHHHHcCC--eEEEecccccchhhhcCeEEEEEecC
Confidence 788899999999999997 49999999999999999999999865
No 11
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=9.4e-45 Score=361.50 Aligned_cols=261 Identities=25% Similarity=0.411 Sum_probs=195.1
Q ss_pred cCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCCCCeEeeCCC
Q 018556 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPE 148 (354)
Q Consensus 72 ~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~G~~l~LRpD 148 (354)
++++|+|++|++|.+++++++|++.++++|++|||++|.||+||+.++|..+.|++ ..++||+|.|++|+.++||||
T Consensus 3 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd 82 (423)
T 1htt_A 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPE 82 (423)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSC
T ss_pred CCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCC
Confidence 57899999999999999999999999999999999999999999999998765763 468999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcC-CCCcE
Q 018556 149 LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI-TASDV 227 (354)
Q Consensus 149 ~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl-~~~~~ 227 (354)
+|+++||+++++....++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.++..+|+|++.++.++|+++|+ + ++
T Consensus 83 ~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~--~~ 160 (423)
T 1htt_A 83 GTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISE--HV 160 (423)
T ss_dssp SHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTCGG--GC
T ss_pred chHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCCCCC--Cc
Confidence 99999999998765557899999999999999999999999999999999999999999999999999999999 6 69
Q ss_pred EEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHH-hccCCHHHHHHHHHHc-----CCCHH-HHHHHHHhhcCCChhhHHH
Q 018556 228 GFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDK-IEKLPLDVIKNDLKSA-----GMSEA-AIEELLRVLSIKSLTELEG 300 (354)
Q Consensus 228 ~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~-~~~~~~~~i~~~L~~~-----g~s~~-~~~~L~~l~~~~~l~~l~~ 300 (354)
.+++||.+..+..... +..+...++. .+.. ++..++.|... ..... ..+.+...+.+. +.+..
T Consensus 161 ~i~i~~~g~~~~~~~~-------~~~l~~~l~~~~~~~-~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~--~~l~~ 230 (423)
T 1htt_A 161 TLELNSIGSLEARANY-------RDALVAFLEQHKEKL-DEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALG--DYLDE 230 (423)
T ss_dssp EEEEEECCCHHHHHHC-------------------------------------------------------------CCH
T ss_pred EEEEcCCCChhhHHHH-------HHHHHHHHHHHHhcc-CHHHHHHHHhchhHhhhcccHHHHHHHhcchHHH--hhhhH
Confidence 9999996643322100 0011111110 0000 00011111100 00000 001111111110 11235
Q ss_pred HHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECC
Q 018556 301 EAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVE 346 (354)
Q Consensus 301 ~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~ 346 (354)
+++++++++.++++.+|+. |.+|++++|+++||||++||++..+
T Consensus 231 ~~~~~l~~~~~~l~~~g~~--i~~D~~l~rg~~YYtg~vFe~~~~~ 274 (423)
T 1htt_A 231 ESREHFAGLCKLLESAGIA--YTVNQRLVRGLDYYNRTVFEWVTNS 274 (423)
T ss_dssp HHHHHHHHHHHHHHTTTCC--CEECTTCCCSSTTCCSEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHcCCe--EEEccccccchHHHcCceEEEEeCC
Confidence 6889999999999999984 8999999999999999999999764
No 12
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=100.00 E-value=8.7e-45 Score=343.09 Aligned_cols=232 Identities=19% Similarity=0.226 Sum_probs=200.9
Q ss_pred HHHHHHH--HHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC-CCe
Q 018556 92 WLFHNFQ--EVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS-LPL 168 (354)
Q Consensus 92 ~i~~~l~--~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~-~Pl 168 (354)
.+++.++ ++|++|||++|.||+||+.++|.. + +|.|++|+.++||||+|+++| +++....+ .|+
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~--------d--~f~d~~g~~l~LRpd~T~~~a---~~~~~~~~~~p~ 71 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG--------N--FFLDRKGNLFSIREDFTKTVL---NHRKRYSPDSQI 71 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS--------S--CEEETTSCEEEECCCHHHHHH---HHHTTCTTCCCE
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc--------c--ccCCCCCCEEEeCCcChHHHH---HHHhhcCCCCce
Confidence 4566666 999999999999999999999853 2 568999999999999999999 44443446 899
Q ss_pred EEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHHCCCCh
Q 018556 169 KWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248 (354)
Q Consensus 169 R~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~~gl~~ 248 (354)
|+||+|+|||+++++. |||+|+|+|+||.+++.+|+|+|.++.++++.+|++ +++|+|||+++++++++. +++
T Consensus 72 R~~y~g~vfR~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~--~~~i~l~~~~~~~~~~~~--~~~ 144 (275)
T 1usy_A 72 KVWYADFVYRYSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEG--PVIVEIGHTGVYEDLLKE--IPK 144 (275)
T ss_dssp EEECCEEEEEEETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCS--CEEEEEEETTHHHHHHTT--SCG
T ss_pred EEEEeceEEecCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCC--CeEEEeCCHHHHHHHHHh--CCH
Confidence 9999999999998765 999999999999999999999999999999999997 799999999999999986 678
Q ss_pred hhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCC----hhhHH--HHHHHHHHHHHHHHH-HcCCCce
Q 018556 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS----LTELE--GEAVADLKLLFSLAE-KFGYSDW 321 (354)
Q Consensus 249 ~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~----l~~l~--~~al~~L~~l~~~l~-~~g~~~~ 321 (354)
+.+.+++++++++++. .+++.|+..+++++..+.+.+++.+.+ ++.+. .+++++|++++++|+ .+| ...
T Consensus 145 ~~~~~l~~~l~~~~~~---~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~l~~~~~~l~~l~~l~~~l~~~~g-~~~ 220 (275)
T 1usy_A 145 DLHEKVLNLIDTKNLA---EIEFLSHMKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEKFP-TVS 220 (275)
T ss_dssp GGHHHHHHHHHTTCHH---HHHHHHHHTCCCCTHHHHHHHHHHHCCSGGGGGTSCCCHHHHHHHHHHHHHHHHHCS-SSE
T ss_pred HHHHHHHHHHHccCHH---HHHHHHHhcCCCHHHHHHHHHHHHhhCCHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CCe
Confidence 8888998898887654 567778888998888888888876532 23333 678999999999999 999 557
Q ss_pred EEEecCCCCCCCCccceeEEEEECCC
Q 018556 322 IQFDASVVRGLAYYTGIVFEGRKVES 347 (354)
Q Consensus 322 i~~Dlslvr~l~YYTGivFe~~~~~~ 347 (354)
+.||++++||++||||+|||+|.++.
T Consensus 221 ~~~D~~lvRgldYYtG~vFe~~~~~~ 246 (275)
T 1usy_A 221 VEIDLTLARTIEEYCGLIFTIYDTSS 246 (275)
T ss_dssp EEECCCCGGGGGTCSSEEEEEEETTT
T ss_pred EEEeccccCCCCccCCeEEEEEECCC
Confidence 99999999999999999999998753
No 13
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=4.3e-40 Score=327.40 Aligned_cols=262 Identities=24% Similarity=0.456 Sum_probs=185.2
Q ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCCCCeEeeCCCC
Q 018556 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPEL 149 (354)
Q Consensus 73 ~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~G~~l~LRpD~ 149 (354)
+++|+|++|++|.+++++++|++.++++|+++||++|.||+|++.++|..+.|++ ..++||+|.|++|+.++||||+
T Consensus 2 ~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~ 81 (420)
T 1qe0_A 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEG 81 (420)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCS
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCC
Confidence 5899999999999999999999999999999999999999999999998765443 4679999999999999999999
Q ss_pred cHHHHHHHHHhCCC--CCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcE
Q 018556 150 TPSLARLVIQKGKS--VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (354)
Q Consensus 150 T~~iaR~~a~~~~~--~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~ 227 (354)
|++++|+++.+... .++|+|+||+|+|||+|+++.||.|||+|+|+|+||.++..+|+|++.++.++|+.||++ ++
T Consensus 82 t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl~--~~ 159 (420)
T 1qe0_A 82 TAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLK--HL 159 (420)
T ss_dssp HHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCC--CE
T ss_pred hHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCCC--ce
Confidence 99999999987643 478999999999999999999999999999999999999999999999999999999997 69
Q ss_pred EEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHh-ccCCHHHHHHHHHHcCC--CHHHHHHHHHhhc-CCC-hhhHHHHH
Q 018556 228 GFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKI-EKLPLDVIKNDLKSAGM--SEAAIEELLRVLS-IKS-LTELEGEA 302 (354)
Q Consensus 228 ~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~-~~~~~~~i~~~L~~~g~--s~~~~~~L~~l~~-~~~-l~~l~~~a 302 (354)
.+++||.+....-. ..+..+...+... +..+. ...+.+...++ -+.......+++. ... .+.+..++
T Consensus 160 ~i~l~~~g~~~~~~-------~~~~~l~~~~~~~~~~l~~-~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~ 231 (420)
T 1qe0_A 160 KLVINSVGDMASRK-------EYNEALVKHFEPVIHEFCS-DCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEES 231 (420)
T ss_dssp EEEEEECCCHHHHH-------HHHHHHHHHHGGGGGGSCH-HHHHTTTTCGGGGC------------CCCCGGGCCCTTH
T ss_pred EEEEcccCchhhHH-------HHHHHHHHHHHHHHhhhCH-HHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHH
Confidence 99999954222100 0011111111110 01110 00010100000 0000000011111 111 11123567
Q ss_pred HHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECC
Q 018556 303 VADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVE 346 (354)
Q Consensus 303 l~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~ 346 (354)
+++++++.++|+.+|+. +.+|++++|+++||||++|+++.++
T Consensus 232 ~~~l~~l~~~l~~~gi~--~~~d~~l~rg~~yYtg~vfe~~~~~ 273 (420)
T 1qe0_A 232 KAYYEQVKAYLDDLGIP--YTEDPNLVRGLDYYTHTAFELMMDN 273 (420)
T ss_dssp HHHHHHHHHHHHHHTCC--CEECTTCCCCCTTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCe--EEECcccccchhhhcCeEEEEEEcC
Confidence 88899999999999985 8999999999999999999999764
No 14
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.97 E-value=4.1e-30 Score=265.26 Aligned_cols=189 Identities=17% Similarity=0.166 Sum_probs=164.3
Q ss_pred ccCCCCCCcccCCCCCCCccccc-----ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhh
Q 018556 48 NQNGGRSGARSLSPSPVSDDLQK-----IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122 (354)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~ 122 (354)
|..+.||.+..+..++. ..|+. +..+.++|++||+|.+++++++|++.++++|+++||++|.||.|++.++|..
T Consensus 4 s~~~~~t~~~~~~~~~~-~~h~~l~~~g~~~~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~ 82 (572)
T 2j3l_A 4 SKMLIPTLREVPNDAEV-LSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKE 82 (572)
T ss_dssp GGSCCCCCSSCCTTCCS-HHHHHHHHTTSEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHH
T ss_pred ccccccccccCCcccCC-cCHHHHHhCCCccccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHh
Confidence 56788998888776654 33333 2235789999999999999999999999999999999999999999999975
Q ss_pred hhhhh--hccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCC-CCCCCeEEEEecceeecCCC-CCC--cccceEEeeee
Q 018556 123 KAGEE--IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TRG--RRREHYQWNMD 196 (354)
Q Consensus 123 ~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~-~~G--r~rEf~Q~g~E 196 (354)
+|+. ..++||+|.|++|+.++|||+.|++++|+++.+.. ..++|+|+||+|+|||+|++ +.| |.|||+|+|+|
T Consensus 83 -sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~ 161 (572)
T 2j3l_A 83 -SGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGY 161 (572)
T ss_dssp -HSHHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEE
T ss_pred -cCCccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeE
Confidence 4753 57899999999999999999999999999998864 34799999999999999977 577 99999999999
Q ss_pred EeccCChhhHHHH---HHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHH
Q 018556 197 IIGVPAVTAEAEL---ISSIITFFKRIGITASDVGFRISSRKVLQEVL 241 (354)
Q Consensus 197 i~g~~~~~aDaEv---i~l~~e~l~~lgl~~~~~~i~lgh~~il~~il 241 (354)
+||.+...+|+|+ +.++.++|+.||++ +.+.+||++.+.+.+
T Consensus 162 ~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~---~~~~~~~~g~~g~~~ 206 (572)
T 2j3l_A 162 SFHADEASLDQSYRDYEKAYSRIFERCGLE---FRAIIGDGGAMGGKD 206 (572)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHHTTCC---EEEEECCGGGGTCSS
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHHHHcCCc---EEEEecccccCCCcc
Confidence 9999888888886 45899999999995 899999999888765
No 15
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.96 E-value=7.5e-32 Score=272.32 Aligned_cols=156 Identities=23% Similarity=0.319 Sum_probs=143.9
Q ss_pred CCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHH
Q 018556 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (354)
Q Consensus 75 ~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~ 152 (354)
.|+|++||+|.+++++++|++.++++|+++||++|.||+|++.++|..+ |+. ..++||+| |++|+.++||||.|++
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~s-g~~~~~~~emy~~-d~~~~~l~LRP~~t~~ 114 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVS-GHIEFYRNNMYLF-DIEGHEFAVKPMNCPY 114 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHT-CCCTTGGGGSEEE-EETTEEEEECSCSHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhc-cCccccccceEEE-ecCCcEEEEccccHHH
Confidence 7999999999999999999999999999999999999999999999864 542 57899999 9999999999999999
Q ss_pred HHHHHHHhCC-CC---CCCeEEEEecceeecCCCC--CC--cccceEEeeeeEeccCChhhH--HHHHHHHHHHHHH-hc
Q 018556 153 LARLVIQKGK-SV---SLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKR-IG 221 (354)
Q Consensus 153 iaR~~a~~~~-~~---~~PlR~~y~g~VfR~e~~~--~G--r~rEf~Q~g~Ei~g~~~~~aD--aEvi~l~~e~l~~-lg 221 (354)
++|+++.+.. .+ ++|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.++..+| +|++.++.++|+. ||
T Consensus 115 i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lG 194 (471)
T 3a32_A 115 HILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFK 194 (471)
T ss_dssp HHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999998743 23 7899999999999999887 89 999999999999999888888 9999999999999 99
Q ss_pred C----CCCcEEEEeCCH
Q 018556 222 I----TASDVGFRISSR 234 (354)
Q Consensus 222 l----~~~~~~i~lgh~ 234 (354)
+ + ++.+.+||+
T Consensus 195 l~~~~~--~~~l~i~~~ 209 (471)
T 3a32_A 195 LGVSSE--TFKVRLSMS 209 (471)
T ss_dssp CCCSTT--TEEEEEECC
T ss_pred CCcCCC--CeEEEEecC
Confidence 9 5 699999997
No 16
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.95 E-value=5.2e-29 Score=250.77 Aligned_cols=188 Identities=18% Similarity=0.165 Sum_probs=165.9
Q ss_pred ccCCCCCCcccCCCCCCCccccc-----ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhh
Q 018556 48 NQNGGRSGARSLSPSPVSDDLQK-----IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122 (354)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~ 122 (354)
|..+.||.+.++..++. ..|+. +..+.|+|++||+|.+++++++|++.++++|.++||++|.||+|++.++|..
T Consensus 24 s~~~~~t~~~~~~~a~~-~~h~ll~r~g~i~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~ 102 (458)
T 2i4l_A 24 SRFFLPILKENPKEAEI-VSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRE 102 (458)
T ss_dssp GGSCCCCCSSCCTTCCS-HHHHHHHHTTCEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH
T ss_pred hhhhhhhhccChhhcCc-chHHHHhhcCCeeccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHh
Confidence 67799999988777654 44444 4457899999999999999999999999999999999999999999999976
Q ss_pred hhhh--hhccccEEeecCCCCeEeeCC---CCcHHHHHHHHHhCCCCCCCeEEEEecceeecC-CCCCC--cccceEEee
Q 018556 123 KAGE--EIRDQLYCFEDRGNRRVALRP---ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWN 194 (354)
Q Consensus 123 ~~g~--~~~~~l~~f~D~~G~~l~LRp---D~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g 194 (354)
+ |+ ...++||+|.|++|+.++||| |+|.+++|.+.... .++|+|+||+|+|||+| +|+.| |.|||+|+|
T Consensus 103 s-g~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~--~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d 179 (458)
T 2i4l_A 103 S-GRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSY--KSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKD 179 (458)
T ss_dssp H-THHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBG--GGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEE
T ss_pred c-CCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhc--cccCeeeEEecCEeeCCCCCCCCcccccceEEeE
Confidence 4 66 357899999999999999999 99999999988754 37899999999999999 99999 999999999
Q ss_pred eeEeccCChhhHHHHHHH---HHHHHHHhcCCCCcEEEEeCCHHHHHHHHH
Q 018556 195 MDIIGVPAVTAEAELISS---IITFFKRIGITASDVGFRISSRKVLQEVLR 242 (354)
Q Consensus 195 ~Ei~g~~~~~aDaEvi~l---~~e~l~~lgl~~~~~~i~lgh~~il~~il~ 242 (354)
+|+||.+...+|+|++.+ +.++|++||++ +.+.+||++.+.+.++
T Consensus 180 ~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~---~~~~~~~~g~~gg~~s 227 (458)
T 2i4l_A 180 AYSFDVDEAGARKSYNKMFVAYLRTFARMGLK---AIPMRAETGPIGGDLS 227 (458)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHTTTCC---EEEEECCCCSSCSSCE
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHcCCc---eEEEEccccccCCccc
Confidence 999998888889988655 99999999995 8899999988776654
No 17
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=99.94 E-value=1.9e-26 Score=228.26 Aligned_cols=158 Identities=20% Similarity=0.296 Sum_probs=141.8
Q ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCc
Q 018556 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELT 150 (354)
Q Consensus 73 ~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T 150 (354)
.+.++|++||+|.+++++++|++.++++|.++||++|.||+|++.++|.. +|+. ..++||+ .|++|+.++|||+.|
T Consensus 16 ~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~d~~~~~~~LrP~~~ 93 (401)
T 1evl_A 16 QEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPMNC 93 (401)
T ss_dssp CTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-EEETTEEEEECSCSH
T ss_pred cCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-EecCCceEEEcCCCC
Confidence 45689999999999999999999999999999999999999999999987 5764 4789999 999999999999999
Q ss_pred HHHHHHHHHhCCC-CCCCeEEEEecceeecCC--CCCC--cccceEEeeeeEeccCChhhHH---HHHHHHHHHHHHhcC
Q 018556 151 PSLARLVIQKGKS-VSLPLKWFAVGQCWRYER--MTRG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFFKRIGI 222 (354)
Q Consensus 151 ~~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~--~~~G--r~rEf~Q~g~Ei~g~~~~~aDa---Evi~l~~e~l~~lgl 222 (354)
++++|+++++... .++|+|+||+|+|||+|. |+.| |.|||+|+|+|+||. ...+|+ |++.++.+++++||+
T Consensus 94 ~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~-~~~~~~e~~e~i~~~~~~~~~lgl 172 (401)
T 1evl_A 94 PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCT-EEQIRDEVNGCIRLVYDMYSTFGF 172 (401)
T ss_dssp HHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEC-GGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCC-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999876442 478999999999999997 4889 999999999999986 556676 599999999999999
Q ss_pred CCCcEEEEeCCHH
Q 018556 223 TASDVGFRISSRK 235 (354)
Q Consensus 223 ~~~~~~i~lgh~~ 235 (354)
+ ++.+.+|+..
T Consensus 173 ~--~~~~~~~~~~ 183 (401)
T 1evl_A 173 E--KIVVKLSTRP 183 (401)
T ss_dssp S--CCEEEEECCC
T ss_pred C--ceEEEEecCC
Confidence 6 5788888853
No 18
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.94 E-value=8.7e-27 Score=243.60 Aligned_cols=157 Identities=24% Similarity=0.350 Sum_probs=145.1
Q ss_pred CCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCC-CeEeeCCCCcH
Q 018556 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGN-RRVALRPELTP 151 (354)
Q Consensus 75 ~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G-~~l~LRpD~T~ 151 (354)
+++|++||+|.+++++++|++.++++|+++||++|.||.+++.++|..+ |+. ..++||++.|.+| +.++||||.|+
T Consensus 259 ~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~s-G~~d~~~~~mf~~~d~~~~~~~~LrP~~~~ 337 (645)
T 1nyr_A 259 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTS-GHWDHYQEDMFPPMQLDETESMVLRPMNCP 337 (645)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHH-THHHHCTTSSCCCEEETTTEEEEECSSSHH
T ss_pred CCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhC-CCccccccCcceeEecCCCeEEEeCCCCCH
Confidence 4899999999999999999999999999999999999999999999874 654 5789999999999 99999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEecceeecCCCC--CC--cccceEEeeeeEeccCChhhH--HHHHHHHHHHHHHhcCCC
Q 018556 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGITA 224 (354)
Q Consensus 152 ~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~~~--~G--r~rEf~Q~g~Ei~g~~~~~aD--aEvi~l~~e~l~~lgl~~ 224 (354)
+++|+++++... +++|+|+||+|+|||+|+++ .| |.|||+|+|+|+||.++..+| +|++.++.++|+.||++
T Consensus 338 ~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~- 416 (645)
T 1nyr_A 338 HHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFE- 416 (645)
T ss_dssp HHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 999999987643 47999999999999999775 67 999999999999999888888 99999999999999997
Q ss_pred CcEEEEeCCH
Q 018556 225 SDVGFRISSR 234 (354)
Q Consensus 225 ~~~~i~lgh~ 234 (354)
++.+++|++
T Consensus 417 -~~~~~l~~~ 425 (645)
T 1nyr_A 417 -DYSFRLSYR 425 (645)
T ss_dssp -CEEEEEEEC
T ss_pred -eEEEEEeCC
Confidence 688999985
No 19
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=99.93 E-value=7.4e-26 Score=228.67 Aligned_cols=161 Identities=18% Similarity=0.181 Sum_probs=139.8
Q ss_pred cccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCC----CCeE
Q 018556 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NRRV 143 (354)
Q Consensus 70 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~----G~~l 143 (354)
++..+.++|++|++|.+++++++|++.++++|+++||++|.||+|++.++|...+|+. ..++||+|.|++ |+.+
T Consensus 27 li~~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l 106 (477)
T 1hc7_A 27 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPL 106 (477)
T ss_dssp SEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEE
T ss_pred CeeecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeE
Confidence 3555679999999999999999999999999999999999999999999998766753 578999999987 8999
Q ss_pred eeCCCCcHHHHHHHHHhCCC-CCCCeEEEEecceeecCCCCCC--cccceEEeeeeEeccCChhhHHHHHHH---HHHHH
Q 018556 144 ALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTRG--RRREHYQWNMDIIGVPAVTAEAELISS---IITFF 217 (354)
Q Consensus 144 ~LRpD~T~~iaR~~a~~~~~-~~~PlR~~y~g~VfR~e~~~~G--r~rEf~Q~g~Ei~g~~~~~aDaEvi~l---~~e~l 217 (354)
+|||+.|++++|+++.+... +++|+|+||+|+|||+|.+..| |.|||+|+|+|++|.+...+|+|++.+ +.+++
T Consensus 107 ~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~ 186 (477)
T 1hc7_A 107 AVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLA 186 (477)
T ss_dssp EECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988543 5799999999999999955559 999999999999999888899997765 89999
Q ss_pred -HHhcCCCCcEEEEeCC
Q 018556 218 -KRIGITASDVGFRISS 233 (354)
Q Consensus 218 -~~lgl~~~~~~i~lgh 233 (354)
+.||++ +.+.+++
T Consensus 187 ~~~Lgl~---~~~~~~~ 200 (477)
T 1hc7_A 187 REYAAIP---VIEGLKT 200 (477)
T ss_dssp HHHHCCC---CEEEECC
T ss_pred HHhcCCe---EEEEeCC
Confidence 899996 7788887
No 20
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.93 E-value=2.5e-25 Score=223.88 Aligned_cols=161 Identities=27% Similarity=0.394 Sum_probs=144.3
Q ss_pred cccC-CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhh--hhccccEEeecCC----CCe
Q 018556 70 KIDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRG----NRR 142 (354)
Q Consensus 70 ~~~~-~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~--~~~~~l~~f~D~~----G~~ 142 (354)
+++. ..++|++|++|.+++++++|++.++++|+++||++|.||+|++.++|.+++|+ ...++||+|.|++ |+.
T Consensus 20 li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~ 99 (459)
T 1nj8_A 20 IYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVK 99 (459)
T ss_dssp SCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEE
T ss_pred CccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCe
Confidence 3455 58899999999999999999999999999999999999999999999876775 3578999999986 899
Q ss_pred EeeCCCCcHHHHHHHHHhCC-CCCCCeEEEEecceeecCCC-CCC--cccceE-EeeeeEeccCChhhHHH---HHHHHH
Q 018556 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TRG--RRREHY-QWNMDIIGVPAVTAEAE---LISSII 214 (354)
Q Consensus 143 l~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~-~~G--r~rEf~-Q~g~Ei~g~~~~~aDaE---vi~l~~ 214 (354)
++|||+.|++++|+++.+.. ..++|+|+||+|+|||+|++ +.| |.|||+ |.|++++|.+...+|+| ++.++.
T Consensus 100 l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~ 179 (459)
T 1nj8_A 100 LALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYK 179 (459)
T ss_dssp EEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999997754 35899999999999999988 888 999999 99999999988888887 899999
Q ss_pred HHHHHhcCCCCcEEEEeCC
Q 018556 215 TFFKRIGITASDVGFRISS 233 (354)
Q Consensus 215 e~l~~lgl~~~~~~i~lgh 233 (354)
++++.||++ +.+.+++
T Consensus 180 ~~~~~LGl~---~~~~~~~ 195 (459)
T 1nj8_A 180 KFFDTLGIP---YLISKRP 195 (459)
T ss_dssp HHHHHHTCC---CEEEEEC
T ss_pred HHHHHCCCc---eEEeecC
Confidence 999999996 5566654
No 21
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.91 E-value=6.6e-24 Score=221.53 Aligned_cols=156 Identities=20% Similarity=0.304 Sum_probs=140.0
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcH
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~ 151 (354)
+.++|++||+|.+++++++|++.+++++.++||++|.||.+++.++|.. +|+. ..++||+ .|.+|+.++|||+.|+
T Consensus 258 ~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~~my~-~d~~~~~~~LrP~~~~ 335 (642)
T 1qf6_A 258 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPMNCP 335 (642)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-HSHHHHHGGGCEE-EEETTEEEEECSSSHH
T ss_pred cCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhh-cCcccccccccee-eecCCceEEecCCCCH
Confidence 5699999999999999999999999999999999999999999999987 5764 5789999 9999999999999999
Q ss_pred HHHHHHHHhCC-CCCCCeEEEEecceeecCCC--CCC--cccceEEeeeeEeccCChhhHHH---HHHHHHHHHHHhcCC
Q 018556 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERM--TRG--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFFKRIGIT 223 (354)
Q Consensus 152 ~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~--~~G--r~rEf~Q~g~Ei~g~~~~~aDaE---vi~l~~e~l~~lgl~ 223 (354)
+++|+++.+.. .+++|+|+||+|+|||+|.+ +.| |.|||+|.|+|+||.+ ..+|+| ++.++.++|+.||++
T Consensus 336 ~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~~e~~~~i~~~~~i~~~lGl~ 414 (642)
T 1qf6_A 336 GHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE-EQIRDEVNGCIRLVYDMYSTFGFE 414 (642)
T ss_dssp HHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECG-GGHHHHHHHHHHHHHHHHGGGTCC
T ss_pred HHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999987654 24799999999999999976 788 9999999999999974 356666 699999999999996
Q ss_pred CCcEEEEeCCH
Q 018556 224 ASDVGFRISSR 234 (354)
Q Consensus 224 ~~~~~i~lgh~ 234 (354)
++.+.+++.
T Consensus 415 --~~~v~l~~~ 423 (642)
T 1qf6_A 415 --KIVVKLSTR 423 (642)
T ss_dssp --CCEEEEECC
T ss_pred --ceEEEEecC
Confidence 578888873
No 22
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=99.89 E-value=4.8e-23 Score=209.28 Aligned_cols=159 Identities=26% Similarity=0.391 Sum_probs=142.0
Q ss_pred ccC-CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCC----CCeE
Q 018556 71 IDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NRRV 143 (354)
Q Consensus 71 ~~~-~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~----G~~l 143 (354)
++. +.++|++|++|.+++++++|++.++++|++ ||++|.||.|++.++|...+|+. ..++||+|.|++ |+.+
T Consensus 54 id~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l 132 (501)
T 1nj1_A 54 IDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKL 132 (501)
T ss_dssp EECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEE
T ss_pred ccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCee
Confidence 444 578999999999999999999999999999 99999999999999998756753 578999999876 7899
Q ss_pred eeCCCCcHHHHHHHHHhCC-CCCCCeEEEEecceeecCCC-CCC--cccceE-EeeeeEeccCChhhHHH---HHHHHHH
Q 018556 144 ALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TRG--RRREHY-QWNMDIIGVPAVTAEAE---LISSIIT 215 (354)
Q Consensus 144 ~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~-~~G--r~rEf~-Q~g~Ei~g~~~~~aDaE---vi~l~~e 215 (354)
+|||+.|++++|+++.+.. ..++|+|+||+|+|||+|++ +.| |.|||+ |.++++++.+...+|+| ++.++.+
T Consensus 133 ~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~ 212 (501)
T 1nj1_A 133 ALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKE 212 (501)
T ss_dssp EECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998854 35899999999999999987 789 999999 99999999887888887 4999999
Q ss_pred HHHHhcCCCCcEEEEeCC
Q 018556 216 FFKRIGITASDVGFRISS 233 (354)
Q Consensus 216 ~l~~lgl~~~~~~i~lgh 233 (354)
+++.||++ +.+.++.
T Consensus 213 i~~~Lgl~---~~~~~~~ 227 (501)
T 1nj1_A 213 FFNSLGIP---YLITRRP 227 (501)
T ss_dssp HHHHHTCC---CEEEECC
T ss_pred HHHHCCCe---EEEEeCC
Confidence 99999996 6677765
No 23
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=99.89 E-value=6.2e-23 Score=206.36 Aligned_cols=148 Identities=22% Similarity=0.309 Sum_probs=129.5
Q ss_pred CCCCCCcCCChHHHHHHHHHHHHHHHHH-HHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecC--CCCeEeeCCC
Q 018556 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--GNRRVALRPE 148 (354)
Q Consensus 74 ~~p~G~~d~~p~~~~~~~~i~~~l~~vf-~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~--~G~~l~LRpD 148 (354)
+..+|++||+|.++++++.|++.+++.+ +++||++|.||.|++.++|.. +|+. ..++||.|.|. +|+.++|||+
T Consensus 51 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~emy~~~d~~~~~~~l~LrPt 129 (460)
T 3uh0_A 51 PLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEK-SGHWENYADDMFKVETTDEEKEEYGLKPM 129 (460)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHH-HTCTTTSGGGSCEECC------CEEECSC
T ss_pred cCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHh-cCCccccccceEEEecCCCCCceEEEccc
Confidence 4689999999999999999999999999 999999999999999999985 5763 57899999987 5899999999
Q ss_pred CcHHHHHHHHHhCC-CCCCCeEEEEecceeecCCCC--CC--cccceEEeeeeEeccCChhhHHH---HHHHHHHHH-HH
Q 018556 149 LTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFF-KR 219 (354)
Q Consensus 149 ~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~~--~G--r~rEf~Q~g~Ei~g~~~~~aDaE---vi~l~~e~l-~~ 219 (354)
.|++++++++.... ..++|+|+||+|+|||+|.++ .| |.|||+|.|+++|+.++ .+|+| ++.++.+++ +.
T Consensus 130 ~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e-~~~~e~~~~i~~~~~~~~~~ 208 (460)
T 3uh0_A 130 NCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPS-QVKSEIFNSLKLIDIVYNKI 208 (460)
T ss_dssp SHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGG-GHHHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999887654 367899999999999999774 78 99999999999998763 45555 899999999 99
Q ss_pred hcCC
Q 018556 220 IGIT 223 (354)
Q Consensus 220 lgl~ 223 (354)
||++
T Consensus 209 lGl~ 212 (460)
T 3uh0_A 209 FPFV 212 (460)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 9996
No 24
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.87 E-value=8.9e-22 Score=199.71 Aligned_cols=154 Identities=23% Similarity=0.300 Sum_probs=136.6
Q ss_pred cccC-CCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCC----CCe
Q 018556 70 KIDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NRR 142 (354)
Q Consensus 70 ~~~~-~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~----G~~ 142 (354)
+++. ++++|+.+|+|.++++++.|++.+++.++++||++|.||.|++.++|...+|+. ..++||++.|++ |+.
T Consensus 37 lid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~ 116 (518)
T 3ial_A 37 LVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEER 116 (518)
T ss_dssp CEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEE
T ss_pred CcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcc
Confidence 3454 789999999999999999999999999999999999999999999997555653 578999999975 689
Q ss_pred EeeCCCCcHHHHHHHHHhCC-CCCCCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCChhhHHHHHH---HHHH
Q 018556 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAELIS---SIIT 215 (354)
Q Consensus 143 l~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~~~aDaEvi~---l~~e 215 (354)
++|||+.|++++++++.... .+++|+|+||+|+|||+| +++.| |.|||+|.++++||.+...+++|+.. ++.+
T Consensus 117 l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~ 196 (518)
T 3ial_A 117 LALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDT 196 (518)
T ss_dssp EEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764 368999999999999999 78889 99999999999998877777777654 5689
Q ss_pred HH-HHhcCC
Q 018556 216 FF-KRIGIT 223 (354)
Q Consensus 216 ~l-~~lgl~ 223 (354)
++ +.||++
T Consensus 197 i~~~~LGlp 205 (518)
T 3ial_A 197 IFSDELCFK 205 (518)
T ss_dssp HHTTTTCCC
T ss_pred HHHHhcCCc
Confidence 99 899996
No 25
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=190.63 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=135.1
Q ss_pred cccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCC----eE
Q 018556 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNR----RV 143 (354)
Q Consensus 70 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~----~l 143 (354)
+++...++|+.+++|.++++++.|++.+++.++++||++|.||.|++.++|...+|+. ..++||.+.|.+++ .+
T Consensus 44 lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l 123 (519)
T 4hvc_A 44 MIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPI 123 (519)
T ss_dssp CEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEE
T ss_pred CeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccce
Confidence 3555678999999999999999999999999999999999999999999998655653 57899999987754 69
Q ss_pred eeCCCCcHHHHHHHHHhCC-CCCCCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCChhhHHHH---HHHHHHH
Q 018556 144 ALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAEL---ISSIITF 216 (354)
Q Consensus 144 ~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~~~aDaEv---i~l~~e~ 216 (354)
+|||+.|++++++++.... .+++|+|+||+|+|||+| +++.| |.|||+|.++++++.....+++|+ +.++.++
T Consensus 124 ~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i 203 (519)
T 4hvc_A 124 AIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQV 203 (519)
T ss_dssp EECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 357999999999999999 77788 999999999999888777777765 5678889
Q ss_pred HHHh-cCC
Q 018556 217 FKRI-GIT 223 (354)
Q Consensus 217 l~~l-gl~ 223 (354)
++.| +++
T Consensus 204 ~~~ll~lp 211 (519)
T 4hvc_A 204 YEELLAIP 211 (519)
T ss_dssp HHTTSCCC
T ss_pred HHHhcCCc
Confidence 9987 775
No 26
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.83 E-value=2.3e-20 Score=195.64 Aligned_cols=151 Identities=25% Similarity=0.382 Sum_probs=126.3
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHH-HCCCeEecCCcccchHHhhhhhhhh--hc---------cccEEeecC-----
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IR---------DQLYCFEDR----- 138 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~~~~~~~~g~~--~~---------~~l~~f~D~----- 138 (354)
++|++||+|.+++++++|++.|++.|. ..||.+|.||++++.++|.. +|+. .. +++|++ |+
T Consensus 90 ~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~-SGH~~~f~d~m~~~~~~~e~yr~-D~l~e~~ 167 (693)
T 2zt5_A 90 VSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKT-SGHVDKFADFMVKDVKNGECFRA-DHLLKAH 167 (693)
T ss_dssp CTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHH-HTHHHHCEEEEEEBSSSCCEEEH-HHHHHHH
T ss_pred CCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhh-cCCcccccccceeeccCCceeec-cHhHHHH
Confidence 599999999999999999999999998 56999999999999999985 5664 22 345554 32
Q ss_pred --------------------------------------------------------------------CCCeEeeCCCCc
Q 018556 139 --------------------------------------------------------------------GNRRVALRPELT 150 (354)
Q Consensus 139 --------------------------------------------------------------------~G~~l~LRpD~T 150 (354)
+|+.+.||||.|
T Consensus 168 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPEta 247 (693)
T 2zt5_A 168 LQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETA 247 (693)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSCSH
T ss_pred HHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccccc
Confidence 568899999999
Q ss_pred HHH----HHHHHHhCCCCCCCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCChh--------hHHH-------
Q 018556 151 PSL----ARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT--------AEAE------- 208 (354)
Q Consensus 151 ~~i----aR~~a~~~~~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~~~--------aDaE------- 208 (354)
.++ .|.+..++ .++|+|+||+|++||+| +|+.| |.|||+|+++|+|+.++.. .|+|
T Consensus 248 qg~f~~f~r~~~~~~--~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~ 325 (693)
T 2zt5_A 248 QGIFLNFKRLLEFNQ--GKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAK 325 (693)
T ss_dssp HHHHTTHHHHHHHTT--TCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHH
T ss_pred hHHHHHHHHHHHHhC--cCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhh
Confidence 998 99888864 37999999999999999 99999 9999999999999976543 2222
Q ss_pred -----------------------------HHHHHHHHHHHhcCCCCcEEEE
Q 018556 209 -----------------------------LISSIITFFKRIGITASDVGFR 230 (354)
Q Consensus 209 -----------------------------vi~l~~e~l~~lgl~~~~~~i~ 230 (354)
+|.++.+++..+|++...+.+.
T Consensus 326 ~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~ 376 (693)
T 2zt5_A 326 AQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFR 376 (693)
T ss_dssp HHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred hhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEe
Confidence 8889999999999974345553
No 27
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.81 E-value=1.1e-19 Score=184.83 Aligned_cols=147 Identities=19% Similarity=0.275 Sum_probs=125.1
Q ss_pred CCCCCcCCChHHHHHHHHHHHHHHHHHH--HCCCeEecCCcccchHHhhhhhhhh--hccccEE----------------
Q 018556 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSR--LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYC---------------- 134 (354)
Q Consensus 75 ~p~G~~d~~p~~~~~~~~i~~~l~~vf~--~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~---------------- 134 (354)
.++|+.||+|.+++++++|++.+++.|. ++||.+|.||.+++.++|.. +|+. ..+.||+
T Consensus 27 ~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~-SGh~~~f~d~m~~~~~~~~~~r~d~l~~~ 105 (505)
T 1ati_A 27 GLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHY-SGHEATFADPMVDNRITKKRYRLDHLLKE 105 (505)
T ss_dssp CCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHH-TSHHHHCEEEEEEC---------------
T ss_pred CCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHh-cCChhhcCccceeccccccccchhhhhhh
Confidence 4689999999999999999999999999 99999999999999999986 4654 2344554
Q ss_pred ---------------------e------e-----------------cCC-------------------------CCeEee
Q 018556 135 ---------------------F------E-----------------DRG-------------------------NRRVAL 145 (354)
Q Consensus 135 ---------------------f------~-----------------D~~-------------------------G~~l~L 145 (354)
| . |.+ ++.++|
T Consensus 106 ~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~~L 185 (505)
T 1ati_A 106 QPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYL 185 (505)
T ss_dssp -----------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEEEE
T ss_pred hhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCccccccceee
Confidence 2 1 111 467899
Q ss_pred CCCCcHHH----HHHHHHhCCCCCCCeEEEEecceeecC-CCCCC--cccceEEeeeeEeccCChhh--HHHHHHHHHHH
Q 018556 146 RPELTPSL----ARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTA--EAELISSIITF 216 (354)
Q Consensus 146 RpD~T~~i----aR~~a~~~~~~~~PlR~~y~g~VfR~e-~~~~G--r~rEf~Q~g~Ei~g~~~~~a--DaEvi~l~~e~ 216 (354)
||+.|.++ +|.+.++. .++|+|+||+|+|||+| +|+.| |.|||+|.++++|+.++... +++++.++.++
T Consensus 186 RPE~t~~i~~~~~~~~~sy~--r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~i 263 (505)
T 1ati_A 186 RPETAQGIFVNFKNVLDATS--RKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKW 263 (505)
T ss_dssp CSSSHHHHHHTHHHHHHHHT--CCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHhcC--CCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999999 78887763 26899999999999999 88999 99999999999999877654 78999999999
Q ss_pred HHHhcCCC
Q 018556 217 FKRIGITA 224 (354)
Q Consensus 217 l~~lgl~~ 224 (354)
+++||++.
T Consensus 264 ~~~LGl~~ 271 (505)
T 1ati_A 264 WQEMGLSR 271 (505)
T ss_dssp HHHTTCCG
T ss_pred HHHcCCCe
Confidence 99999973
No 28
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.80 E-value=2.1e-19 Score=178.97 Aligned_cols=144 Identities=20% Similarity=0.273 Sum_probs=126.6
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHH
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
-+|++|++|.++++++.|++.+++.+.++||++|.||.|++.++|.. +|+. ..++||++. |+.++|||+.|+++
T Consensus 161 g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~---~~~l~LrPt~e~~i 236 (425)
T 2dq3_A 161 GSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIG-TGQLPKFEEDLYKCE---RDNLYLIPTAEVPL 236 (425)
T ss_dssp CSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HSCTTTTGGGSCBCT---TTCCEECSSTHHHH
T ss_pred CCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHh-cCCCCcChhhheEec---CCeEEEcCCCcHHH
Confidence 49999999999999999999999999999999999999999999976 4743 578899885 56799999999999
Q ss_pred HHHHHHhCC-CCCCCeEEEEecceeecCCCC-----CC--cccceEEeeeeEeccCCh--hhHHHHHHHHHHHHHHhcCC
Q 018556 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV--TAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 154 aR~~a~~~~-~~~~PlR~~y~g~VfR~e~~~-----~G--r~rEf~Q~g~Ei~g~~~~--~aDaEvi~l~~e~l~~lgl~ 223 (354)
+++++.... ..++|+|+||+|+|||+|.++ .| |.|||+|.++++|+.++. ....|++.++.++|+.||++
T Consensus 237 ~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~ 316 (425)
T 2dq3_A 237 TNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP 316 (425)
T ss_dssp HGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999987643 357899999999999999754 34 899999999999998753 23489999999999999996
No 29
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.76 E-value=3.9e-18 Score=169.51 Aligned_cols=144 Identities=16% Similarity=0.216 Sum_probs=126.6
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHH
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
..|+.+|+|.++++++.|++.+++.+.++||.+|.||.|++.++|.. +|+. ..++||++.| +.++|+|..|+++
T Consensus 155 g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~d---~~l~L~Pt~e~~~ 230 (421)
T 1ses_A 155 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLG-TGHFPAYRDQVWAIAE---TDLYLTGTAEVVL 230 (421)
T ss_dssp CSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HTCTTTTGGGSCBBTT---SSEEECSSTHHHH
T ss_pred CCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHh-cCCCCcCchhcEEEcC---CeEEEeecCcHHH
Confidence 37999999999999999999999999999999999999999999976 4764 5789999864 6799999999999
Q ss_pred HHHHHHhCC-CCCCCeEEEEecceeecC-----CCCCC--cccceEEeeeeEeccCC-hhhH---HHHHHHHHHHHHHhc
Q 018556 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYE-----RMTRG--RRREHYQWNMDIIGVPA-VTAE---AELISSIITFFKRIG 221 (354)
Q Consensus 154 aR~~a~~~~-~~~~PlR~~y~g~VfR~e-----~~~~G--r~rEf~Q~g~Ei~g~~~-~~aD---aEvi~l~~e~l~~lg 221 (354)
++++..... ..++|+|+|++|+|||+| +++.| |.|||+|.++++|+.++ ..++ .|++.++.++|+.||
T Consensus 231 ~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LG 310 (421)
T 1ses_A 231 NALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLE 310 (421)
T ss_dssp HHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999876532 347899999999999999 67888 99999999999998772 2334 489999999999999
Q ss_pred CC
Q 018556 222 IT 223 (354)
Q Consensus 222 l~ 223 (354)
++
T Consensus 311 L~ 312 (421)
T 1ses_A 311 LP 312 (421)
T ss_dssp CC
T ss_pred Cc
Confidence 96
No 30
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.73 E-value=1.3e-17 Score=167.05 Aligned_cols=152 Identities=19% Similarity=0.153 Sum_probs=129.2
Q ss_pred CCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHH
Q 018556 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (354)
Q Consensus 75 ~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~ 152 (354)
.-.|+.+|+|.++++++.|++.+++.+.++||++|.||.|++.++|... |+. ..++||++.| +.++|||+.|++
T Consensus 181 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~d---~~l~LrPt~e~~ 256 (455)
T 2dq0_A 181 SGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGS-TSFEDFEDVIYKVED---EDLYLIPTAEHP 256 (455)
T ss_dssp TCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTT-SCTTHHHHTCCBBTT---SSCEECSSTHHH
T ss_pred cCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhc-CCCCCChHhhCeecC---CcEEEcCcCcHH
Confidence 3479999999999999999999999999999999999999999999864 754 5779999864 679999999999
Q ss_pred HHHHHHHhCC-CCCCCeEEEEecceeecCCCCCC-------cccceEEeeeeEeccCChh--hHHHHHHHHHHHHHHhcC
Q 018556 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRG-------RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGI 222 (354)
Q Consensus 153 iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~~~G-------r~rEf~Q~g~Ei~g~~~~~--aDaEvi~l~~e~l~~lgl 222 (354)
++++++.... ..++|+|+|++|+|||+|.+..| |.|||+|.++.+|+.+... .-.|++.++.++|+.||+
T Consensus 257 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL 336 (455)
T 2dq0_A 257 LAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEI 336 (455)
T ss_dssp HHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999987643 35789999999999999976544 8999999999999876321 234899999999999999
Q ss_pred CCCcEEEEeCC
Q 018556 223 TASDVGFRISS 233 (354)
Q Consensus 223 ~~~~~~i~lgh 233 (354)
+ +.+....
T Consensus 337 ~---yrv~~~~ 344 (455)
T 2dq0_A 337 P---YRVVNIC 344 (455)
T ss_dssp C---EEEEECC
T ss_pred c---eEEEECC
Confidence 6 5555544
No 31
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.73 E-value=1.9e-17 Score=156.90 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCCCe
Q 018556 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (354)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~Pl 168 (354)
..+++++.++++|..+||+||.||.|++.++|.. +|.....++|++.++.++.++|||++++...+.++.+....+.|+
T Consensus 72 ~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~-~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Pl 150 (288)
T 3dsq_A 72 ALLELEEKLAKALHQQGFVQVVTPTIITKSALAK-MTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPI 150 (288)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHT-TSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhh-cCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCE
Confidence 4578999999999999999999999999998875 344222256666555456689999999999887776644467899
Q ss_pred EEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q 018556 169 KWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (354)
Q Consensus 169 R~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~ 230 (354)
|+|++|+|||++.++.+|.+||+|++++++|.++...++|++.++.+++++||++ ++.+.
T Consensus 151 rlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~--~~~~~ 210 (288)
T 3dsq_A 151 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIR--EFELV 210 (288)
T ss_dssp EEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCC--CCEEE
T ss_pred EEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCC--CcEEe
Confidence 9999999999998888899999999999999877778999999999999999996 35444
No 32
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.68 E-value=4.9e-17 Score=164.86 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=125.1
Q ss_pred CCCCCcCCChHHHHHHHHHHHHHHH-HHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEee-----c---------
Q 018556 75 PPKGTRDFPPEDMRLRNWLFHNFQE-VSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFE-----D--------- 137 (354)
Q Consensus 75 ~p~G~~d~~p~~~~~~~~i~~~l~~-vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~-----D--------- 137 (354)
..+|+.||+|.+++++++|++.+++ ++.++||++|.+|.+.+.++|.. +|+. ..++||++. |
T Consensus 219 ~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~-SGh~~~F~demy~v~~~~~Rd~~~~e~~~~ 297 (522)
T 2cja_A 219 SSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMK-SGHAKGVYPEIYYVCPPQTRDPDYWEEVAD 297 (522)
T ss_dssp SSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHH-HTGGGTCGGGCCEEECBSCCCHHHHHHHHH
T ss_pred CCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhh-cCCcCccccceeeeecCCccchhhhhhhhh
Confidence 7899999999999999999999997 58999999999999999999986 5754 578899985 3
Q ss_pred ----------------CCCCeEeeCCCCcHHHHHHHHHhCC-CCCCCeEEEE-ecceeecCCCC--C--CcccceEEeee
Q 018556 138 ----------------RGNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFA-VGQCWRYERMT--R--GRRREHYQWNM 195 (354)
Q Consensus 138 ----------------~~G~~l~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y-~g~VfR~e~~~--~--Gr~rEf~Q~g~ 195 (354)
.+++.++|||+.+.++++++..... ..++|+|+|+ +|+|||+| ++ . +|.|||+|.++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~ 376 (522)
T 2cja_A 298 YYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEI 376 (522)
T ss_dssp HHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEE
T ss_pred hhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeE
Confidence 1478899999999999999885432 3568999999 99999999 66 5 49999999999
Q ss_pred eEeccCChhh-H-HHHH-HHHHHHHHHhcCC
Q 018556 196 DIIGVPAVTA-E-AELI-SSIITFFKRIGIT 223 (354)
Q Consensus 196 Ei~g~~~~~a-D-aEvi-~l~~e~l~~lgl~ 223 (354)
++|+.++... + .+++ ..+..+++.|||+
T Consensus 377 ~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp 407 (522)
T 2cja_A 377 VWIGTKEEVLKCAEELHDRYMHIFNDILDIE 407 (522)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred EEEeChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999754432 2 4678 7788888999997
No 33
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.58 E-value=8.2e-15 Score=147.98 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=123.6
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecC--------CCCeEee
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--------GNRRVAL 145 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~--------~G~~l~L 145 (354)
-.|+..|.|.++++.+.+++.+++.+.++||++|.||.+.+.++|.. +|+. ..++||++.|. .++.++|
T Consensus 190 Gsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~-sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L 268 (522)
T 3vbb_A 190 GSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQE-VAQLSQFDEELYKVIGKGSEKSDDNSYDEKYL 268 (522)
T ss_dssp STTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HSCCC-CCSCCCEEC------------CCEEE
T ss_pred CcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhh-cCCcccCcccceEeecCCccccccccCcceeE
Confidence 37999999999999999999999999999999999999999999975 5754 57899999875 3678999
Q ss_pred CCCCcHHHHHHHHHhCC-CCCCCeEEEEecceeecCCCC-----CC--cccceEEeeeeEeccCCh-hh---HHHHHHHH
Q 018556 146 RPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV-TA---EAELISSI 213 (354)
Q Consensus 146 RpD~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~~-----~G--r~rEf~Q~g~Ei~g~~~~-~a---DaEvi~l~ 213 (354)
+|..+++++.++..... ..++|+|+|++|+|||+|... .| |.|||.|.++.+|..+.. .+ -.+++..+
T Consensus 269 ~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 269 IATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp CSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHH
Confidence 99999999988765533 368999999999999999642 44 889999999999998653 22 36789999
Q ss_pred HHHHHHhcCC
Q 018556 214 ITFFKRIGIT 223 (354)
Q Consensus 214 ~e~l~~lgl~ 223 (354)
.++|+.||++
T Consensus 349 e~il~~LGLp 358 (522)
T 3vbb_A 349 EEFYQSLGIP 358 (522)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCc
Confidence 9999999996
No 34
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.58 E-value=2.1e-14 Score=136.01 Aligned_cols=127 Identities=26% Similarity=0.399 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhh----hhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g----~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
+.++.+.+++.|..+||.||.||+|+..+.+.. .+ +.+.+++|.| | +..+|||++++++.+.++.+.....
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~-~~~~~~~p~~~~~~~~-~---~~~~LR~slsp~L~~~l~~n~~~~~ 153 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIER-MGIDNDTELSKQIFRV-D---KNFCLRPMLTPNLYNYLRKLDRALP 153 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHH-TTCCTTSSGGGGCCEE-T---TTEEECSCSHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHh-cCCCcCCchhhhheee-C---CCeeEcccChHHHHHHHHHhhccCC
Confidence 678999999999999999999999999887653 22 1234457766 3 5789999999999999988755557
Q ss_pred CCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCC
Q 018556 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~ 223 (354)
.|.|+|++|+|||+|..+.++.+||+|++++++|.+. .+.|+..++.++++.+|++
T Consensus 154 ~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~--~f~elkg~le~ll~~lGl~ 209 (290)
T 3qtc_A 154 DPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGC--TRENLESIITDFLNHLGID 209 (290)
T ss_dssp SSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTC--CHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCCh--HHHHHHHHHHHHHHHcCCC
Confidence 8999999999999997777899999999999999763 5788999999999999984
No 35
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.58 E-value=8.4e-15 Score=147.96 Aligned_cols=146 Identities=17% Similarity=0.211 Sum_probs=126.2
Q ss_pred CCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hcc-ccEEeecCCCCeEeeCCCCcHHH
Q 018556 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRD-QLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 77 ~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~-~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
.|+..|.|.++++.+.|++.+++.+.++||++|.||.+.+.++|.. +|.. ..+ +||++.|.+++.++|+|..++++
T Consensus 209 ~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~ 287 (501)
T 1wle_A 209 HRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEG-CGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGL 287 (501)
T ss_dssp TTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHH
T ss_pred CceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHh-hcCCCccCccccEEEecCCCCeEEECCcCcHHH
Confidence 6888889999999999999999999999999999999999999975 5654 345 99999887778899999999999
Q ss_pred HHHHHHhCC-CCCCCeEEEEecceeecCCC----CCC--cccceEEeeeeEeccCC-hh---hHHHHHHHHHHHHHHhcC
Q 018556 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERM----TRG--RRREHYQWNMDIIGVPA-VT---AEAELISSIITFFKRIGI 222 (354)
Q Consensus 154 aR~~a~~~~-~~~~PlR~~y~g~VfR~e~~----~~G--r~rEf~Q~g~Ei~g~~~-~~---aDaEvi~l~~e~l~~lgl 222 (354)
+.++..... ..++|+|+|++|+|||+|.. ..| |.|||.|.++.+|..+. .. ...+++..+.++|+.||+
T Consensus 288 ~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgL 367 (501)
T 1wle_A 288 AGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGL 367 (501)
T ss_dssp HHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999886543 35799999999999999943 445 88999999999999874 33 235789999999999999
Q ss_pred C
Q 018556 223 T 223 (354)
Q Consensus 223 ~ 223 (354)
+
T Consensus 368 p 368 (501)
T 1wle_A 368 H 368 (501)
T ss_dssp C
T ss_pred c
Confidence 6
No 36
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.53 E-value=6.4e-14 Score=140.58 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=124.4
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHH
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
-.|+..|.|.++++.+.+++.+++.+.++||++|.+|.+.+.++|.. +|+. ..++||++.|. ++.++|+|...+++
T Consensus 197 Gsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~~~~f~e~mf~v~~~-~~~~~L~PTaE~~l 274 (484)
T 3lss_A 197 GGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGE-VAQLSQFDEELYQVSGD-GDKKYLIATSEMPI 274 (484)
T ss_dssp CTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHH-HSCHHHHHHTCCEEESS-SSCEEECSSTHHHH
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHh-cCCcccccccceEeecC-CcceEEeccCcHHH
Confidence 46788899999999999999999999999999999999999999975 5754 46799999764 77899999999999
Q ss_pred HHHHHHhCC-CCCCCeEEEEecceeecCC-CC----CC--cccceEEeeeeEeccCCh-hh---HHHHHHHHHHHHHHhc
Q 018556 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYER-MT----RG--RRREHYQWNMDIIGVPAV-TA---EAELISSIITFFKRIG 221 (354)
Q Consensus 154 aR~~a~~~~-~~~~PlR~~y~g~VfR~e~-~~----~G--r~rEf~Q~g~Ei~g~~~~-~a---DaEvi~l~~e~l~~lg 221 (354)
+-++..... ..++|+|+|.+++|||+|. +. .| |.|||.|.++.+|..+.. .+ -.+++..+.++|+.||
T Consensus 275 ~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LG 354 (484)
T 3lss_A 275 AAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLG 354 (484)
T ss_dssp HHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcC
Confidence 888765432 4689999999999999995 31 45 899999999999998654 12 2568889999999999
Q ss_pred CC
Q 018556 222 IT 223 (354)
Q Consensus 222 l~ 223 (354)
++
T Consensus 355 Lp 356 (484)
T 3lss_A 355 LP 356 (484)
T ss_dssp CC
T ss_pred Cc
Confidence 96
No 37
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.52 E-value=7.1e-14 Score=140.15 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=124.0
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHH
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
..|+..|.|.++++.+.+++.+++.+.++||++|.+|.+.+.++|.. +|+. ..++||++.|. ++.++|+|.+..|+
T Consensus 174 Gsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~l~~f~eemf~v~~~-~~~~~LipTaE~pl 251 (485)
T 3qne_A 174 GHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAK-TAQLSQFDEELYKVIDG-EDEKYLIATSEQPI 251 (485)
T ss_dssp CTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHH-HSCHHHHTTTCCEEEET-TEEEEECSSTHHHH
T ss_pred cceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cCCccccccceEEEeCC-CCeEEEeccccHHH
Confidence 46999999999999999999999999999999999999999999975 5653 46899999875 67899999999999
Q ss_pred HHHHHHhCC---CCCCCeEEEEecceeecCCCC-----CC--cccceEEeeeeEeccCChh--hHHHHHHHHHHHHHHhc
Q 018556 154 ARLVIQKGK---SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIG 221 (354)
Q Consensus 154 aR~~a~~~~---~~~~PlR~~y~g~VfR~e~~~-----~G--r~rEf~Q~g~Ei~g~~~~~--aDaEvi~l~~e~l~~lg 221 (354)
+.++..... ..++|+|+|++++|||+|... .| |.|||.|.++.+|..+... .-.+++..+.++|+.||
T Consensus 252 ~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~Lg 331 (485)
T 3qne_A 252 SAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLG 331 (485)
T ss_dssp HHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 998776432 257899999999999999532 45 8899999999999876432 22578899999999999
Q ss_pred CC
Q 018556 222 IT 223 (354)
Q Consensus 222 l~ 223 (354)
|+
T Consensus 332 Lp 333 (485)
T 3qne_A 332 LP 333 (485)
T ss_dssp CC
T ss_pred Cc
Confidence 96
No 38
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.50 E-value=1.4e-13 Score=140.29 Aligned_cols=144 Identities=16% Similarity=0.208 Sum_probs=123.2
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCCCCeEeeCCCCcHHH
Q 018556 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 76 p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
-.|+..|.|.++++.+.+.+.+++.+.++||++|.||.+-+.++|.. +|+. ..++||++.| +.++|+|...+++
T Consensus 264 G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~-sG~~~~f~e~mf~~~~---~~~~L~PT~E~~~ 339 (536)
T 3err_A 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLG-TGHFPAYRDQVWAIAE---TDLYLTGTAEVVL 339 (536)
T ss_dssp CSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HTCTTTTGGGCCEETT---TTEEECSSTHHHH
T ss_pred CCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHh-cCCcccChhhceEecC---CCEEEccCCcHHH
Confidence 46889999999999999999999999999999999999999999975 5764 4689999865 5799999999999
Q ss_pred HHHHHHhCC-CCCCCeEEEEecceeecCC-----CCCC--cccceEEeeeeEeccCC-hhhH---HHHHHHHHHHHHHhc
Q 018556 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYER-----MTRG--RRREHYQWNMDIIGVPA-VTAE---AELISSIITFFKRIG 221 (354)
Q Consensus 154 aR~~a~~~~-~~~~PlR~~y~g~VfR~e~-----~~~G--r~rEf~Q~g~Ei~g~~~-~~aD---aEvi~l~~e~l~~lg 221 (354)
+-++..... ..++|+|+|.+|+|||+|. +..| |.|||+|.++.+|..++ ..++ .+++..+.++|+.||
T Consensus 340 ~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~Lg 419 (536)
T 3err_A 340 NALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLE 419 (536)
T ss_dssp HHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 988765432 3679999999999999995 2345 89999999999999876 2232 468888999999999
Q ss_pred CC
Q 018556 222 IT 223 (354)
Q Consensus 222 l~ 223 (354)
++
T Consensus 420 Lp 421 (536)
T 3err_A 420 LP 421 (536)
T ss_dssp CC
T ss_pred Cc
Confidence 96
No 39
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.36 E-value=4e-12 Score=120.61 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=97.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccch-HHhhhh-hhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHh
Q 018556 83 PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-ALFIRK-AGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQK 160 (354)
Q Consensus 83 ~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~-~~~~~~-~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~ 160 (354)
.....+++.++.+.++++|.++||.+|+||.++.. +++... .|+. .++|.+. -.|+.+.||.......-+.++ .
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~-~~~~~~~L~~Spe~~~~~l~~-~ 86 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVE-IYGVKMRLTHSMILHKQLAIA-M 86 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEE-ETTEEEEECSCSHHHHHHHHH-T
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEE-cCCCCEEeccChHHHHHHHhh-c
Confidence 45678999999999999999999999999999998 777654 3332 5677653 345678887443333333332 1
Q ss_pred CCCCCCCeEEEEecceeecCCCCC--Cccc-ceEEeeeeEeccCChhhHHHHHHHHHHHHHHhc
Q 018556 161 GKSVSLPLKWFAVGQCWRYERMTR--GRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRIG 221 (354)
Q Consensus 161 ~~~~~~PlR~~y~g~VfR~e~~~~--Gr~r-Ef~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lg 221 (354)
.+.|+||+|+|||+|+||. +|.+ ||+|+++|+.|.+ +.|++.++.++++.+.
T Consensus 87 -----g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~----~~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 87 -----GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK----MEDIMRLIERLVYGLF 141 (294)
T ss_dssp -----TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC----HHHHHHHHHHHHHHHH
T ss_pred -----CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC----HHHHHHHHHHHHHHHH
Confidence 2779999999999999664 6777 9999999999984 7788888888888775
No 40
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.23 E-value=4e-12 Score=127.47 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=104.0
Q ss_pred CCc-CCChHHHHHHHHHHHHHHHHH--HHCCCeEecCCcccchHHhhhh-hhh-----hhccc----------cEEee-c
Q 018556 78 GTR-DFPPEDMRLRNWLFHNFQEVS--RLFGFEEVDFPVLESEALFIRK-AGE-----EIRDQ----------LYCFE-D 137 (354)
Q Consensus 78 G~~-d~~p~~~~~~~~i~~~l~~vf--~~~Gy~eI~tP~le~~~~~~~~-~g~-----~~~~~----------l~~f~-D 137 (354)
|+. ||+|.+++++++|++.+++.+ .+.||.+|+||++.+.++|... .|+ .+.++ |+..+ +
T Consensus 52 G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~ 131 (454)
T 1g5h_A 52 GCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLEN 131 (454)
T ss_dssp CCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHH
T ss_pred cceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHh
Confidence 767 999999999999999998874 6899999999999988877531 122 12221 33221 1
Q ss_pred CCCCeEeeCCCCcHHHHHHHHHhC--CCCCCCeEEEEecceee---cC-CCCCC--cccceEEeeeeEeccCChhh--HH
Q 018556 138 RGNRRVALRPELTPSLARLVIQKG--KSVSLPLKWFAVGQCWR---YE-RMTRG--RRREHYQWNMDIIGVPAVTA--EA 207 (354)
Q Consensus 138 ~~G~~l~LRpD~T~~iaR~~a~~~--~~~~~PlR~~y~g~VfR---~e-~~~~G--r~rEf~Q~g~Ei~g~~~~~a--Da 207 (354)
..++.++|||+....+...+.+.. ...++|++++++|+||| +| .+..| |.|||+|.++++|..++... -.
T Consensus 132 ~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~~~e~~~ 211 (454)
T 1g5h_A 132 LLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLD 211 (454)
T ss_dssp HHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHH
T ss_pred hcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCHhhHHHHHH
Confidence 124578999977766655554432 12379999999999999 57 55565 99999999999998643221 13
Q ss_pred HHHHHHHHHHHHhcCCCCcEE
Q 018556 208 ELISSIITFFKRIGITASDVG 228 (354)
Q Consensus 208 Evi~l~~e~l~~lgl~~~~~~ 228 (354)
.++..+.++++.||++...+.
T Consensus 212 ~~~~~~~~~~~~lgi~~~~~r 232 (454)
T 1g5h_A 212 FWLRHRLLWWRKFAMSPSNFS 232 (454)
T ss_dssp HHHHHHHHHHHTTCSSGGGEE
T ss_pred HHHHHHHHHHHHcCCCceeEE
Confidence 467888999999999744443
No 41
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.20 E-value=6e-11 Score=118.21 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeC--CCCcHHHHHHHHHhCC
Q 018556 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGK 162 (354)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LR--pD~T~~iaR~~a~~~~ 162 (354)
.-.+.+.++.+.+++.|.++||.+|+||.++... ++ -..++|.+ |..|+.+.|| |+++... +++
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~------~e-~~~~~f~~-~~~~~~~~Lr~Spel~~~~--~~~---- 198 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTGA------VE-GGATLFKL-KYFDKYAYLSQSAQLYLEA--AIF---- 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC------SS-CGGGCCEE-EETTEEEEECSCSHHHHHH--HHH----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeec------CC-CCceeEEE-eecCCcEEeccChHHHHHH--Hhc----
Confidence 3467888999999999999999999999999651 11 13467776 4678889999 7776543 222
Q ss_pred CCCCCeEEEEecceeecCCCCCCccc-ceEEeeeeEeccCChhhHHHHHHHHHHHHHHh
Q 018556 163 SVSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (354)
Q Consensus 163 ~~~~PlR~~y~g~VfR~e~~~~Gr~r-Ef~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l 220 (354)
.+.|+|++|+|||+|+++.+|.+ ||+|+++|+.+.+ +.|++.++.++++.+
T Consensus 199 ---g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~----~~dlm~~~e~ll~~l 250 (434)
T 1x54_A 199 ---GLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMD----LWDIMKVEEELVSYM 250 (434)
T ss_dssp ---HHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred ---CccceEEEecceecCCCCCcccccEEEEeeEEEcCCC----HHHHHHHHHHHHHHH
Confidence 16799999999999988888777 9999999999974 677888887777665
No 42
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.14 E-value=4e-10 Score=108.04 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=120.7
Q ss_pred CCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh--hccccEEeecCC---------------
Q 018556 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG--------------- 139 (354)
Q Consensus 77 ~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~--~~~~l~~f~D~~--------------- 139 (354)
+|+.-+-+..+++++.+++.+++ -...||++|.+|.+-..++|.. +|.. ..++||....-.
T Consensus 54 ~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~-SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~ 131 (346)
T 3mf2_A 54 DGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEK-SGYLKSFPNLLGCVCGLHGTEREINAAVSRFDA 131 (346)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHH-TTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHh-cCCcccChhhcceeecccccchhhhhhhhhhcc
Confidence 56777788999999999999999 8899999999999999999975 5754 567888764321
Q ss_pred ---------CCeEeeCCCCcHHHHHHHHHh-CCCCCCCeEEEEecceeecCCCCCC--cccceEEeeeeEeccCChh-hH
Q 018556 140 ---------NRRVALRPELTPSLARLVIQK-GKSVSLPLKWFAVGQCWRYERMTRG--RRREHYQWNMDIIGVPAVT-AE 206 (354)
Q Consensus 140 ---------G~~l~LRpD~T~~iaR~~a~~-~~~~~~PlR~~y~g~VfR~e~~~~G--r~rEf~Q~g~Ei~g~~~~~-aD 206 (354)
+..++|.|..++++.-++... ... ..|+|+.-.|+|||+|.. .| |.++|.|..+.+|+.++.. ++
T Consensus 132 ~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~-~~plr~~~~g~CFR~EaS-~GL~RvhqF~kvE~v~~~tpEqs~~e 209 (346)
T 3mf2_A 132 GGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP-KGGLRFDVAADCFRREPS-KHLDRLQSFRMREYVCIGTPDDVSDF 209 (346)
T ss_dssp TSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC-TTCEEEEEEEEEECCCCC-SSTTSCSEEEEEEEEEEESHHHHHHH
T ss_pred ccccccccCCCCEEEcccccHHHHHHHccCCccc-ccCeEEEEECCccCCcCC-CCCeeeeeeEEEEEEEEeCHHHHHHH
Confidence 357999999999999999854 332 559999999999999974 35 9999999999999975432 22
Q ss_pred -HHHHHHHHHHHHHhcCCCCcEEEEe
Q 018556 207 -AELISSIITFFKRIGITASDVGFRI 231 (354)
Q Consensus 207 -aEvi~l~~e~l~~lgl~~~~~~i~l 231 (354)
.+++..+.++++.||++ +.+.+
T Consensus 210 ~e~l~~~ae~il~~LgLp---yrv~~ 232 (346)
T 3mf2_A 210 RERWMVRAQAIARDLGLT---FRVDY 232 (346)
T ss_dssp HHHHHHHHHHHHHHTTCC---CEEEE
T ss_pred HHHHHHHHHHHHHHCCCC---EEEEE
Confidence 46889999999999996 55554
No 43
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=99.11 E-value=1.3e-10 Score=115.42 Aligned_cols=116 Identities=17% Similarity=0.278 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeC--CCCcHHHHHHHHHhCC
Q 018556 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGK 162 (354)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LR--pD~T~~iaR~~a~~~~ 162 (354)
.-.+.+.++.+.+++.|.++||.+|+||.++... .+. ..++|.+ |..|+.+.|| |+++. ++++..
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~-----~e~--~~~~f~~-~~~g~~~~L~~Spel~~---~~l~~g-- 189 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG-----AEG--GSGLFGV-DYFEKRAYLAQSPQLYK---QIMVGV-- 189 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------CHHHH---HHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC-----CCC--CceeEEE-eeCCCcEEeeeCHHHHH---HHHhhC--
Confidence 3467889999999999999999999999999752 111 3456766 4567889999 77764 333321
Q ss_pred CCCCCeEEEEecceeecCCCCCCccc-ceEEeeeeEeccCChhhHHHHHHHHHHHHHHh
Q 018556 163 SVSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (354)
Q Consensus 163 ~~~~PlR~~y~g~VfR~e~~~~Gr~r-Ef~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l 220 (354)
.-|+|++|+|||+|+++.+|.+ ||+|+++|+.+.++ ..|++.++.++++.+
T Consensus 190 ----~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d---~~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 190 ----FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIAD---EEDLMRLEEALLAEM 241 (422)
T ss_dssp ----HSEEEEEEEC-------------CCEEEEEEEESCSS---HHHHHHHHHHHHHHH
T ss_pred ----CCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCC---HHHHHHHHHHHHHHH
Confidence 4599999999999998888777 99999999999843 566777777766654
No 44
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.10 E-value=5.8e-10 Score=110.90 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeC--CCCcHHHHHHHHHhCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LR--pD~T~~iaR~~a~~~~~ 163 (354)
-.+.+.++.+.+++.|..+||.+|+||.++... ++ -..++|.+ +..|+.+.|| |+++ .-| ++..
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~------~e-~~~~~f~~-~~~~~~~~L~~Spql~--~~~-~~~g--- 198 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIASA------TE-GGAQLFPV-IYFGKEAFLAQSPQLY--KEL-MAGV--- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------SS-TTCCCCEE-EETTEEEEECSCCHHH--HHH-HHHH---
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeC------CC-CCceeEEE-ecCCceEEecCCcHHH--HHH-HHhC---
Confidence 457888999999999999999999999998752 11 13467776 4568889999 7665 344 3332
Q ss_pred CCCCeEEEEecceeecCCCCCCccc-ceEEeeeeEeccCChhhHHHHHHHHHHHHHHh
Q 018556 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e~~~~Gr~r-Ef~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l 220 (354)
+-|+|++|+|||+|+++.+|.+ ||+|+++|+.+.+ ..|++.++.++++.+
T Consensus 199 ---~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~----~~dlm~~~e~ll~~l 249 (429)
T 1wyd_A 199 ---VERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFAD----YNDVMQLLEKILHNI 249 (429)
T ss_dssp ---HSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred ---cCceEEEcccccccCCccccccceeeEeeeeecCCC----HHHHHHHHHHHHHHH
Confidence 5699999999999988888776 9999999999974 566777776666554
No 45
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.09 E-value=3.1e-10 Score=113.20 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=100.3
Q ss_pred CCCc-CCChHHHHHHHHHHHHHHHHHHH-CC-CeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHH
Q 018556 77 KGTR-DFPPEDMRLRNWLFHNFQEVSRL-FG-FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSL 153 (354)
Q Consensus 77 ~G~~-d~~p~~~~~~~~i~~~l~~vf~~-~G-y~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~i 153 (354)
.|.. ||+|.++.+++.|++.+.+.+.. .| +.+|+||..+. |.. +|++ +-|+ ++|||+....+
T Consensus 93 ~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~---~~~-SGH~---d~~~--------~~LRPeTaqg~ 157 (459)
T 3ikl_A 93 SGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKP---GPL-LPGD---SAFR--------GGLRENLLHGA 157 (459)
T ss_dssp TTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCC---SCC-CSSC---SCCT--------TB-CSCSHHHH
T ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhccCceEeeccccccc---ccc-Ccch---hhhc--------ceECCCCChhH
Confidence 3445 99999999999999988888864 66 66699999444 543 5764 1222 89999888776
Q ss_pred HHHHHHhCC--CCCCCeEEEEecceeecCC----CCCC--cccceEEeeeeEeccCChhhH--HHHHHHHHHHHHHhcCC
Q 018556 154 ARLVIQKGK--SVSLPLKWFAVGQCWRYER----MTRG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGIT 223 (354)
Q Consensus 154 aR~~a~~~~--~~~~PlR~~y~g~VfR~e~----~~~G--r~rEf~Q~g~Ei~g~~~~~aD--aEvi~l~~e~l~~lgl~ 223 (354)
.-.+.+... ..++|+|++++|+|||+|. +..| |.|||+|..+++|..++...+ ..++..+.++++.||++
T Consensus 158 ~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~ 237 (459)
T 3ikl_A 158 LEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMS 237 (459)
T ss_dssp HHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 655443322 2389999999999999983 4455 899999999999987654332 46788899999999997
Q ss_pred CCcEEEE
Q 018556 224 ASDVGFR 230 (354)
Q Consensus 224 ~~~~~i~ 230 (354)
..++.+.
T Consensus 238 ~~~~r~~ 244 (459)
T 3ikl_A 238 PSNFSSS 244 (459)
T ss_dssp GGGEEEE
T ss_pred hhhEEEe
Confidence 5455443
No 46
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.93 E-value=6.5e-09 Score=104.95 Aligned_cols=113 Identities=17% Similarity=0.244 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeC--CCCcHHHHHHHHHhCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LR--pD~T~~iaR~~a~~~~~ 163 (354)
-.+++.++...+++.|..+||.||+||+++..+. +. ..++|.+. ..|+.+.|| |++-. -++++.
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~-----~~--ga~~f~~~-~~~~~~~L~~Spql~~--k~l~~~---- 242 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAPS-----EG--GSSVFEVT-YFKGKAYLAQSPQFNK--QQLIVA---- 242 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS-----SS--SSCCCEEE-ETTEEEEECSCTHHHH--HHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecC-----CC--Ccccceec-cCCccEEcccChHHHH--HHHHhc----
Confidence 4578889999999999999999999999988541 21 34578764 468899999 77743 233332
Q ss_pred CCCCeEEEEecceeecCCCCCCccc-ceEEeeeeE-eccCChhhHHHHHHHHHHHHH
Q 018556 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDI-IGVPAVTAEAELISSIITFFK 218 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e~~~~Gr~r-Ef~Q~g~Ei-~g~~~~~aDaEvi~l~~e~l~ 218 (354)
.+-|+|++|+|||+|+++.+|.+ ||+|+++|+ |+.+. .|++.++.+.++
T Consensus 243 --g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~----~dlm~l~E~ll~ 293 (487)
T 1eov_A 243 --DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHY----HEVLDTLSELFV 293 (487)
T ss_dssp --TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCT----HHHHHHHHHHHH
T ss_pred --CCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCH----HHHHHHHHHHHH
Confidence 25699999999999998888877 999999998 77532 344444444443
No 47
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.80 E-value=3.5e-08 Score=99.64 Aligned_cols=116 Identities=15% Similarity=0.247 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee-cCCCCeEeeCCCCcHHHH--HHHHHhCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLA--RLVIQKGK 162 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~-D~~G~~l~LRpD~T~~ia--R~~a~~~~ 162 (354)
-.+++.++...+++.|..+||.||+||++.+.. .|. ..++|.+. |..|+.+.|| ..+++. |+++.
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~Ga--~a~~F~~~~~~~~~~~yLr--~SpqLylk~l~v~--- 240 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GGA--AARPFITHHNALDMTLYMR--IAIELHLKRLIVG--- 240 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SSCCCEEEETTTTEEEEEC--SCSHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CCC--cccceEecccCCCceeEEe--cCHHHHHHHHhhc---
Confidence 456788899999999999999999999998642 122 24677765 6678899999 233322 22321
Q ss_pred CCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHh
Q 018556 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (354)
Q Consensus 163 ~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l 220 (354)
-.-|+|++|+|||+|..+..|..||+|+++|..+.+ ..+++.++.+.++.+
T Consensus 241 ---G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d----~~dlm~l~E~ll~~l 291 (493)
T 3a74_A 241 ---GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYAD----FRDIMKLTENLIAHI 291 (493)
T ss_dssp ---TCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred ---ccCceEEECccccCCCCCcccCCceeEEEEEecCCC----HHHHHHHHHHHHHHH
Confidence 256999999999999888889999999999999974 445666555555443
No 48
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.75 E-value=8.2e-08 Score=96.73 Aligned_cols=135 Identities=20% Similarity=0.279 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecC-CcccchH-Hhhhhh-h-hhh---ccccEEeecCC--------------------
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDF-PVLESEA-LFIRKA-G-EEI---RDQLYCFEDRG-------------------- 139 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~t-P~le~~~-~~~~~~-g-~~~---~~~l~~f~D~~-------------------- 139 (354)
..-..++.+.++++|...||.++.+ |.+++.. .|.... . ++. ..+.|.+.++.
T Consensus 224 lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g 303 (508)
T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303 (508)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhcc
Confidence 4567789999999999999999875 8777742 232210 0 111 12345555431
Q ss_pred ---------------CCeEeeCCCCcHHHHHHHHHhCC-CCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCCh
Q 018556 140 ---------------NRRVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV 203 (354)
Q Consensus 140 ---------------G~~l~LRpD~T~~iaR~~a~~~~-~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~ 203 (354)
++..+||+.+|+..+|.++.+.. ....|+|+|++|+|||++....++..+|+|++.-++|.+
T Consensus 304 ~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~-- 381 (508)
T 3l4g_A 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHG-- 381 (508)
T ss_dssp BTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEES--
T ss_pred ccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCC--
Confidence 15789999999999999987643 245799999999999999877888999999999888753
Q ss_pred hhHHHHHHHHHHHHHHhcCC
Q 018556 204 TAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 204 ~aDaEvi~l~~e~l~~lgl~ 223 (354)
..-+++..++..+++.+|+.
T Consensus 382 v~f~dLKg~Le~~l~~lG~~ 401 (508)
T 3l4g_A 382 LTLGHLMGVLREFFTKLGIT 401 (508)
T ss_dssp CCHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHcCCc
Confidence 34567888889999999874
No 49
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.63 E-value=2.8e-07 Score=93.26 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee-cCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~-D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-.+++.+|...+++.|..+||.||+||++.+.. .|. ..+.|.+. +..|..+.||--.-.-.=|+++.-
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~-----~Ga--~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G---- 250 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GGA--SARPFITHHNALDLDMYLRIAPELYLKRLVVGG---- 250 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC-----CSS--CCCCCEEEETTTTEEEEECSCSHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEecC-----CCC--cccceEeccCCCCceEEeccCHHHHHHHHhhcC----
Confidence 346788899999999999999999999998541 121 23566554 456888999932222222333332
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHH
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKR 219 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~ 219 (354)
.-|+|++|+|||+|..+..|..||+|+++|..+.+ ..+++.++.+.++.
T Consensus 251 --~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d----~~dlm~l~E~li~~ 299 (504)
T 1e1o_A 251 --FERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD----YHDLIELTESLFRT 299 (504)
T ss_dssp --CCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCC----HHHHHHHHHHHHHH
T ss_pred --CCcEEEEcccccCCCCCccccCceeeeeeeecCCC----HHHHHHHHHHHHHH
Confidence 45999999999999887788999999999999874 44455555554443
No 50
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.62 E-value=1.8e-07 Score=94.72 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=65.5
Q ss_pred eEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCC-CCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHh
Q 018556 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (354)
Q Consensus 142 ~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~-~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l 220 (354)
..+||+.+++++...++.+......|+|+|++|+|||.+.+ +.++.+||+|+++.+.|.+.. -.++..++..+++.|
T Consensus 180 ~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vd--f~dLKgilE~LL~~L 257 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELS--VDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCC--HHHHHHHHHHHHGGG
T ss_pred ccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 47999999998887777665545789999999999998766 667789999999999997432 356888888888888
Q ss_pred cCC
Q 018556 221 GIT 223 (354)
Q Consensus 221 gl~ 223 (354)
|+.
T Consensus 258 Gi~ 260 (534)
T 2du3_A 258 GFE 260 (534)
T ss_dssp TCC
T ss_pred CCC
Confidence 864
No 51
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.58 E-value=3.8e-07 Score=88.13 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee--c---CCCCeEeeCCCCcHHHHHHHH
Q 018556 84 PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE--D---RGNRRVALRPELTPSLARLVI 158 (354)
Q Consensus 84 p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~--D---~~G~~l~LRpD~T~~iaR~~a 158 (354)
-.-.+++.++...+++.|...||.||+||++.... ++....+.|++. + ..+....|+--.-.-.-|.++
T Consensus 33 ~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~------~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~ 106 (345)
T 3a5y_A 33 IPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQAT------VTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLV 106 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------CCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecC------CCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHH
Confidence 35678999999999999999999999999998643 111123445432 1 112456677433333444455
Q ss_pred HhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHh
Q 018556 159 QKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (354)
Q Consensus 159 ~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l 220 (354)
.. --|+|++|+|||+|.....|..||+|+++|.-+.+ ..+++.++.+.++.+
T Consensus 107 ~g------~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d----~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 107 AG------CGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYD----MYRLMNEVDDLLQQV 158 (345)
T ss_dssp TT------CCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred cC------CCcEEEEEcceeCCCCcccccchhheeeeeeeCCC----HHHHHHHHHHHHHHH
Confidence 32 23999999999999877778999999999999974 445666666666654
No 52
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.53 E-value=1.9e-06 Score=83.41 Aligned_cols=128 Identities=20% Similarity=0.286 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHCCCeEecCCcccchH-Hhhhh-hhhh-h---ccccEEeecCCC-----------CeEeeCCCCcH
Q 018556 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRK-AGEE-I---RDQLYCFEDRGN-----------RRVALRPELTP 151 (354)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~-~~~~~-~g~~-~---~~~l~~f~D~~G-----------~~l~LRpD~T~ 151 (354)
-..++.+.++++|...||.|+.+|.+++.. .|... ...+ . ..+.|.+.++.. ...+||..+++
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchH
Confidence 367788899999999999999999998743 23221 1110 0 134566665533 67899999999
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHh-cC
Q 018556 152 SLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI-GI 222 (354)
Q Consensus 152 ~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l-gl 222 (354)
..+|.++.+ ..|+|+|.+|+|||++.....+..||+|++.-++|.+.. -.++..++..+++.+ |.
T Consensus 182 ~llr~l~~~----~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~--f~dLKg~le~ll~~lfG~ 247 (350)
T 1b7y_A 182 MQVRYMVAH----TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIA--MAHLKGAIYELAQALFGP 247 (350)
T ss_dssp HHHHHHHHC----CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCC--HHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhc----CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCC--HHHHHHHHHHHHHhhcCC
Confidence 999999873 469999999999998653344678999999999997422 345677778888887 75
No 53
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.41 E-value=1.8e-06 Score=85.93 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeC--CCCcHHHHHHHHHhCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LR--pD~T~~iaR~~a~~~~~ 163 (354)
-.+++.++...+++.|..+||.||+||++.....- | ..++|.+ +--|+.+.|+ |++-.+. .++.
T Consensus 131 ~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~e----G---~~~~F~~-~~~g~~~~L~~SpqLylq~--l~~g---- 196 (435)
T 2xgt_A 131 LLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVE----G---GSTLFNL-DYFGEQSFLTQSSQLYLET--CIPT---- 196 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSS----C---TTSCCEE-EETTEEEEECSCSHHHHHH--HHHH----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccCC----C---chhceee-ccCCcccccCCChHHHHHH--hhhc----
Confidence 45788899999999999999999999998765321 2 1234544 3457778887 5554442 2332
Q ss_pred CCCCeEEEEecceeecCCCCCCccc-ceEEeeeeEeccCChhhHHHHHHHHHHHHHH
Q 018556 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKR 219 (354)
Q Consensus 164 ~~~PlR~~y~g~VfR~e~~~~Gr~r-Ef~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~ 219 (354)
.-|+|++|+|||+|.....|.. ||+|+++|.-+.+ ..+++.++.+.++.
T Consensus 197 ---~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d----~~d~m~~~E~li~~ 246 (435)
T 2xgt_A 197 ---LGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFIT----LDDLMEKIEELVCD 246 (435)
T ss_dssp ---HCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCC----HHHHHHHHHHHHHH
T ss_pred ---cCceEEEecceecCCCCccccccceeEEEEEEecCC----HHHHHHHHHHHHHH
Confidence 2399999999999987665555 9999999999874 34455555444443
No 54
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.40 E-value=2.9e-06 Score=85.95 Aligned_cols=132 Identities=19% Similarity=0.258 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecC---------------------------
Q 018556 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDR--------------------------- 138 (354)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~--------------------------- 138 (354)
-...+.+.++++|...||+++..|.++....-....|+. ..++.|.+.++
T Consensus 58 Pl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~~~ 137 (549)
T 2du7_A 58 PVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEKK 137 (549)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCCCS
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccchh
Confidence 356788899999999999999999998754321222232 12225555532
Q ss_pred -----------CC----------------------------------------CeEeeCCCCcHHHHHHHHHhCCCCCCC
Q 018556 139 -----------GN----------------------------------------RRVALRPELTPSLARLVIQKGKSVSLP 167 (354)
Q Consensus 139 -----------~G----------------------------------------~~l~LRpD~T~~iaR~~a~~~~~~~~P 167 (354)
.+ +..+||+.+++++...+..+......|
T Consensus 138 ~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~~r~~~p 217 (549)
T 2du7_A 138 ERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIKKRKLP 217 (549)
T ss_dssp SSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTTTTSCSS
T ss_pred hhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccccccccccchhHHHHHHHHHhcCCCC
Confidence 11 357999999998777776664445789
Q ss_pred eEEEEecceeecCCC-CCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcC
Q 018556 168 LKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (354)
Q Consensus 168 lR~~y~g~VfR~e~~-~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl 222 (354)
+|+|.+|+|||.+.. ...+..||+|++.-+.|.+ ..-.++..++..+++.||+
T Consensus 218 vrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~--vdF~DLKG~Le~ll~~LGi 271 (549)
T 2du7_A 218 LKLFSIDRCFRREQREDRSHLMSYHSASCVVVGED--VSVDDGKVVAEGLLAQFGF 271 (549)
T ss_dssp EEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTT--CCHHHHHHHHHHHHGGGTC
T ss_pred eEEEEEeeEEecCCcccCcCCCcceEEEEEEECCC--CCHHHHHHHHHHHHHHcCC
Confidence 999999999997653 3456799999999999973 3345677788888888886
No 55
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.33 E-value=6e-06 Score=78.00 Aligned_cols=145 Identities=15% Similarity=0.176 Sum_probs=96.2
Q ss_pred cccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHH-hhhh-hhhh-h---ccccEEeecCCCC
Q 018556 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRK-AGEE-I---RDQLYCFEDRGNR 141 (354)
Q Consensus 68 ~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~-~~~~-~g~~-~---~~~l~~f~D~~G~ 141 (354)
.+++...+|.+... +....-..++.+.+++.|...||.|+.+|.+++... |... .... . ..+.+.+. .
T Consensus 35 yd~i~~tlp~~~~~--~g~~~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~----e 108 (294)
T 2rhq_A 35 EETIDVTLPSRQIS--IGSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT----D 108 (294)
T ss_dssp TTCCCTTSCCCCCC--CCCCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS----S
T ss_pred cccCCccCCCcccC--CCCCCHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc----C
Confidence 34455555633221 122233567888999999999999999999887532 2221 1110 0 01134442 4
Q ss_pred eEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHh-
Q 018556 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI- 220 (354)
Q Consensus 142 ~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l- 220 (354)
..+||+.+++.+.|.++.+. ...|+|+|.+|+|||++.....+..||+|+++-+.|.+.. -.++..++..+++.+
T Consensus 109 ~~vLRtsl~p~ll~~l~~N~--~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~d--f~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 109 EILMRTHTSPVQARTMEKRN--GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIK--MSDLKGTLELVAKKLF 184 (294)
T ss_dssp SEEECSSSHHHHHHHHHHTT--TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred cceeeccCHHHHHHHHHhcC--CCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCC--HHHHHHHHHHHHHHHh
Confidence 57999999999999999875 3579999999999997542233456999999999996322 244566667777777
Q ss_pred cC
Q 018556 221 GI 222 (354)
Q Consensus 221 gl 222 (354)
|+
T Consensus 185 g~ 186 (294)
T 2rhq_A 185 GA 186 (294)
T ss_dssp CT
T ss_pred CC
Confidence 75
No 56
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.27 E-value=6.1e-06 Score=82.14 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
-.+++..+...+++.|...||.||+||++..... . | ..++|.+.. -|+.+.|+--.-...-++++.
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~--e--g---~~~~f~~~~-~~~~~yL~~Spql~~q~l~~~------ 201 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT--E--G---GTELFPMKY-FEEDAFLAQSPQLYKQIMMAS------ 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS--S--C---SSSCCEEEE-TTEEEEECSCSHHHHHHGGGT------
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC--C--C---CccceeEee-CCccEEEecChHHHHHHHHhc------
Confidence 3578889999999999999999999999977531 1 1 224565543 467788885443333343332
Q ss_pred CCeEEEEecceeecCCCCCCc-ccceEEeeeeEeccC
Q 018556 166 LPLKWFAVGQCWRYERMTRGR-RREHYQWNMDIIGVP 201 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~Gr-~rEf~Q~g~Ei~g~~ 201 (354)
-.-|+|++|+|||+|..+.+| .-||+|+++|.-+.+
T Consensus 202 g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~ 238 (438)
T 3nem_A 202 GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE 238 (438)
T ss_dssp TCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCS
T ss_pred CCCceEEEcceEECCCCCCcccccceeeeeeeeccCc
Confidence 145999999999999876654 469999999999876
No 57
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.26 E-value=2.5e-05 Score=80.00 Aligned_cols=131 Identities=20% Similarity=0.269 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCC---------------------------
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG--------------------------- 139 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~--------------------------- 139 (354)
...+.+.++++|...||+++..|.++....-....|+. ..++.|.+.++.
T Consensus 67 l~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~ 146 (648)
T 2odr_B 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKES 146 (648)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccchhhhh
Confidence 56788899999999999999999998744221222221 122255554321
Q ss_pred --------------------------------------------------CCeEeeCCCCcHHHHHHHHHhCCCCCCCeE
Q 018556 140 --------------------------------------------------NRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (354)
Q Consensus 140 --------------------------------------------------G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR 169 (354)
.+.-+||+.+++++...+..+......|+|
T Consensus 147 l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~~R~~~pvR 226 (648)
T 2odr_B 147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFK 226 (648)
T ss_dssp -------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEE
T ss_pred hhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHHhcCCCCeE
Confidence 135689999999777777776544578999
Q ss_pred EEEecceeecCCC-CCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcC
Q 018556 170 WFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (354)
Q Consensus 170 ~~y~g~VfR~e~~-~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl 222 (354)
+|.+|+|||.+.. ...+..||+|++.-+.|.... -.++..++..+++.||+
T Consensus 227 LFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vd--F~DLKGvLE~LL~~LGi 278 (648)
T 2odr_B 227 LFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVD--INDGKAIAEGLLSQFGF 278 (648)
T ss_dssp EEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCC--HHHHHHHHHHHHHTTTC
T ss_pred EEEEeeEEecCccccccCCCcceEEEEEEECCCCC--HHHHHHHHHHHHHHcCC
Confidence 9999999997643 334568999999999997322 24566777778887876
No 58
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.25 E-value=2.6e-05 Score=79.98 Aligned_cols=131 Identities=20% Similarity=0.269 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCC---------------------------
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG--------------------------- 139 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~--------------------------- 139 (354)
...+.+.++++|...||+++..|.++....-....|+. ..++.|.+.++.
T Consensus 67 l~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~ 146 (665)
T 2odr_A 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKES 146 (665)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhhhh
Confidence 56788899999999999999999998744221222221 122255554321
Q ss_pred --------------------------------------------------CCeEeeCCCCcHHHHHHHHHhCCCCCCCeE
Q 018556 140 --------------------------------------------------NRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (354)
Q Consensus 140 --------------------------------------------------G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR 169 (354)
.+.-+||+.+++++...+..+......|+|
T Consensus 147 l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlPGLL~~lr~N~~R~~~pvR 226 (665)
T 2odr_A 147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFK 226 (665)
T ss_dssp -------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEE
T ss_pred hhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhcCCCCeE
Confidence 135689999999777777776544578999
Q ss_pred EEEecceeecCCC-CCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcC
Q 018556 170 WFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (354)
Q Consensus 170 ~~y~g~VfR~e~~-~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl 222 (354)
+|.+|+|||.+.. ...+..||+|++.-+.|.+.. -.++..++..+++.||+
T Consensus 227 LFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vd--F~DLKGvLE~LL~~LGi 278 (665)
T 2odr_A 227 LFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVD--INDGKAIAEGLLSQFGF 278 (665)
T ss_dssp EEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCC--HHHHHHHHHHHHHTTTC
T ss_pred EEEEeeEEecCccccccCCCcceEEEEEEECCCCC--HHHHHHHHHHHHHHcCC
Confidence 9999999997643 334568999999999997322 24566777778887876
No 59
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.25 E-value=2.7e-05 Score=79.99 Aligned_cols=131 Identities=20% Similarity=0.269 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCC---------------------------
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG--------------------------- 139 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~--------------------------- 139 (354)
...+.+.++++|...||+++..|.++....-....|+. ..++.|.+.++.
T Consensus 67 l~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~ 146 (685)
T 2odr_D 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKES 146 (685)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhhhh
Confidence 56788899999999999999999998743221222221 122255554321
Q ss_pred --------------------------------------------------CCeEeeCCCCcHHHHHHHHHhCCCCCCCeE
Q 018556 140 --------------------------------------------------NRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (354)
Q Consensus 140 --------------------------------------------------G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR 169 (354)
.+.-+||+.+++++...+..+......|+|
T Consensus 147 l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~R~~~pvR 226 (685)
T 2odr_D 147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFK 226 (685)
T ss_dssp -------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEE
T ss_pred hhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhCCCCCeE
Confidence 135689999999777777776544578999
Q ss_pred EEEecceeecCCC-CCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcC
Q 018556 170 WFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (354)
Q Consensus 170 ~~y~g~VfR~e~~-~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl 222 (354)
+|.+|+|||.+.. ...+..||+|++.-+.|.+.. -.++..++..+++.||+
T Consensus 227 LFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vD--F~DLKGvLE~LL~~LGi 278 (685)
T 2odr_D 227 LFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVD--INDGKAIAEGLLSQFGF 278 (685)
T ss_dssp EEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCC--HHHHHHHHHHHHHTTTC
T ss_pred EEEeccEEecCccccccCCCcceEEEEEEECCCCC--HHHHHHHHHHHHHHcCC
Confidence 9999999997643 334568999999999997322 24566777777887776
No 60
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.23 E-value=2.9e-05 Score=79.92 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhh---hccccEEeecCC---------------------------
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG--------------------------- 139 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~---~~~~l~~f~D~~--------------------------- 139 (354)
...+.+.++++|...||+++..|.++....-....|+. ..++.|.+.++.
T Consensus 67 l~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~ 146 (701)
T 2odr_C 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKES 146 (701)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC--------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhhhh
Confidence 56788899999999999999999998744221222222 122255554321
Q ss_pred ----------C----------------------------------------CeEeeCCCCcHHHHHHHHHhCCCCCCCeE
Q 018556 140 ----------N----------------------------------------RRVALRPELTPSLARLVIQKGKSVSLPLK 169 (354)
Q Consensus 140 ----------G----------------------------------------~~l~LRpD~T~~iaR~~a~~~~~~~~PlR 169 (354)
| +.-+||+.+++++...+..+......|+|
T Consensus 147 l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~R~~~pvR 226 (701)
T 2odr_C 147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFK 226 (701)
T ss_dssp -------------------------------------------CCCCCCEEEEEEECCCTHHHHHHHHHHHTTTSCSCEE
T ss_pred hhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhCCCCCeE
Confidence 1 25689999999777777776544578999
Q ss_pred EEEecceeecCCC-CCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcC
Q 018556 170 WFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (354)
Q Consensus 170 ~~y~g~VfR~e~~-~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl 222 (354)
+|.+|+|||.+.. ...+..||+|++.-+.|.+.. -.++..++..+++.||+
T Consensus 227 LFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vD--F~DLKGvLE~LL~~LGi 278 (701)
T 2odr_C 227 LFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVD--INDGKAIAEGLLSQFGF 278 (701)
T ss_dssp EEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCC--HHHHHHHHHHHHHTTTC
T ss_pred EEEEeeEEccCccccccCCCcceEEEEEEECCCCC--HHHHHHHHHHHHHHcCC
Confidence 9999999997643 334568999999999997322 24566777777887776
No 61
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=98.09 E-value=2.3e-05 Score=78.40 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~ 166 (354)
.+++.++...+++.|...||.||+||++..... . | ..++|.+ |--|+.+.|+--...-.-++++.
T Consensus 156 lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~-e---G---g~~~f~~-~~~~~~~~L~~SpqL~lq~l~~g------- 220 (456)
T 3m4p_A 156 LQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC-E---G---GSTLFKL-QYFNEPAYLTQSSQLYLESVIAS------- 220 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEC-------------CCCCEE-EETTEEEEECSCCHHHHHTTHHH-------
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC-C---C---ccccccc-cccCCCcccccCHHHHHHHHHhc-------
Confidence 578889999999999999999999999866432 1 1 1234543 33466777776554444444443
Q ss_pred CeEEEEecceeecCCCCCC-cccceEEeeeeEeccC
Q 018556 167 PLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (354)
Q Consensus 167 PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|+|||+|..... +.-||+|+++|.-+.+
T Consensus 221 ~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d 256 (456)
T 3m4p_A 221 LGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFIS 256 (456)
T ss_dssp HSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCC
T ss_pred cCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCC
Confidence 2389999999999976544 4569999999998874
No 62
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=98.05 E-value=3.6e-05 Score=79.08 Aligned_cols=101 Identities=21% Similarity=0.330 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeec--CCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D--~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
.+++.++...+++.|..+||.||+||++..... + |. . . |.+-. ..|..++|+----.-.=+.++. .
T Consensus 144 l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~-e---GA--r-~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~-G--- 211 (580)
T 1l0w_A 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP-E---GA--R-D-FLVPYRHEPGLFYALPQSPQLFKQMLMVA-G--- 211 (580)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS-S---SS--C-C-CEEECTTSTTEEEECCSCSHHHHHHHHHT-T---
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC-C---CC--C-C-ccccccccCCceeECccCHHHHHHHHHHh-c---
Confidence 567888999999999999999999999975321 1 21 1 1 33321 2466667773222222222332 2
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|+|||+|..+..|.=||+|+++|.-..+
T Consensus 212 --~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d 246 (580)
T 1l0w_A 212 --LDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVE 246 (580)
T ss_dssp --CSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCC
T ss_pred --cCCeEEEeceeeCCCCCCCcCCCccceeeeecCCC
Confidence 23999999999999766665449999999999874
No 63
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=98.05 E-value=3.9e-05 Score=78.97 Aligned_cols=99 Identities=19% Similarity=0.343 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeec--CCCCeEeeCCCCcHHHH--HHHHHhCC
Q 018556 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLA--RLVIQKGK 162 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D--~~G~~l~LRpD~T~~ia--R~~a~~~~ 162 (354)
.+++.++...+++.|..+||.||+||++..... + |. .. |.+-. ..|..++|+- .+++. +.++. .
T Consensus 138 l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~-e---GA---r~-F~v~~~~~~~~~y~L~q--SPQl~kq~Lmv~-G- 205 (585)
T 1c0a_A 138 LKTRAKITSLVRRFMDDHGFLDIETPMLTKATP-E---GA---RD-YLVPSRVHKGKFYALPQ--SPQLFKQLLMMS-G- 205 (585)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS-S---SS---CC-CEEECSSSTTCEEECCS--CSHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC-C---CC---cc-ceecccccCCceEeCcc--CHHHHHHHHHhc-C-
Confidence 467788999999999999999999999975321 1 21 11 43322 2466677773 23332 22332 2
Q ss_pred CCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 163 ~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|+|||+|..+..|.=||+|+++|.-..+
T Consensus 206 ----~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d 240 (585)
T 1c0a_A 206 ----FDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT 240 (585)
T ss_dssp ----CCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCC
T ss_pred ----CCceEEEeceeecCCCCCCcCcccceeeeeecCCC
Confidence 23999999999999766665449999999999874
No 64
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=98.02 E-value=9.5e-05 Score=66.42 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCCCCCC
Q 018556 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLP 167 (354)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~~~~P 167 (354)
..+++++.+++.+...||.|+.|-+|...+.+.. .+.....+.+++.++ +...-+||+.+.+++.+.++.+......+
T Consensus 5 ~~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~ 83 (213)
T 3ica_A 5 RRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLS 83 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCC
Confidence 3457888999999999999999988877665542 221112345677776 45677999999999999999876544556
Q ss_pred eEEEEecceeecCCCC------CCcccceEEeeeeEeccC--------ChhhH-HHHHHHHHHHHHHhcCCCCcEEEE
Q 018556 168 LKWFAVGQCWRYERMT------RGRRREHYQWNMDIIGVP--------AVTAE-AELISSIITFFKRIGITASDVGFR 230 (354)
Q Consensus 168 lR~~y~g~VfR~e~~~------~Gr~rEf~Q~g~Ei~g~~--------~~~aD-aEvi~l~~e~l~~lgl~~~~~~i~ 230 (354)
+|+|.+|+||+.+... .+..+|...+++-+.|.. ....| .++-.++..++..+|++..++.+.
T Consensus 84 ~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~~ 161 (213)
T 3ica_A 84 LYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLK 161 (213)
T ss_dssp EEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred eeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEe
Confidence 9999999999975311 123578888888888852 12234 456777788889999852124444
No 65
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=98.02 E-value=8e-05 Score=66.90 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCCCCCCe
Q 018556 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (354)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~~~~Pl 168 (354)
.+++++.+++.+...||.|+.|-+|...+.+.. .+.....+.+++.++ +...-+||+.+.+++.+.++.+......++
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 457888999999999999999988877665542 221112356777766 455679999999999999998765545679
Q ss_pred EEEEecceeecCCCC------CCcccceEEeeeeEeccC--------ChhhH-HHHHHHHHHHHHHhcCC
Q 018556 169 KWFAVGQCWRYERMT------RGRRREHYQWNMDIIGVP--------AVTAE-AELISSIITFFKRIGIT 223 (354)
Q Consensus 169 R~~y~g~VfR~e~~~------~Gr~rEf~Q~g~Ei~g~~--------~~~aD-aEvi~l~~e~l~~lgl~ 223 (354)
|+|.+|+||+.+... .+..+|...+++-+.|.. ....| .++-.++..++..+|++
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBC
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999975311 123578888888888842 12244 45666778888899885
No 66
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=98.00 E-value=6.1e-05 Score=76.50 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEee-cCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~-D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-.+++..+...+++.|...||.||+||++.... .|. ..+.|... +--|..+.||----.-.=|.++.-
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gGa--~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g---- 243 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GGA--VAKPFITYHNELDMNLYMRIAPELYHKMLVVGG---- 243 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SCCCCEEEETTTTEEEEECSCSHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CCc--cccceeeecccCCcceEeeCCHHHHHHHHHhcC----
Confidence 346777899999999999999999999997532 121 23445432 234777888843333333444421
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|+|||+|....-|.-||+|+++|.-..+
T Consensus 244 --~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d 278 (521)
T 3bju_A 244 --IDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYAD 278 (521)
T ss_dssp --CCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCC
T ss_pred --cCceEEEEcceeCCCCCCccchhhhhhhhhhhcCC
Confidence 33999999999999765567889999999998864
No 67
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.99 E-value=6.7e-05 Score=76.12 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEe-ecCCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f-~D~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
-.+++.++...+++.|...||.||+||++.... .|. ..+.|.. .+.-|..+.||--.-.-.=|.++.-
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gGA--~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G---- 271 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GGA--AAKPFVTHHNALDMEMFLRIAPELYLKRLIVGG---- 271 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SSCCCEEEETTTTEEEEECSCSHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CCC--cccccccccccCCcceecccCHHHHHHHHHhcC----
Confidence 357888999999999999999999999997531 121 1233432 2334666777743333333444432
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEeccC
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~ 201 (354)
--|+|++|+|||+|....-|.-||+|+++|.-..+
T Consensus 272 --~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d 306 (529)
T 4ex5_A 272 --FERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTD 306 (529)
T ss_dssp --CSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCC
T ss_pred --CCcEEEeehheecCCCCCCcccHhHhhhhhhhcCC
Confidence 34999999999999766667889999999998764
No 68
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.88 E-value=0.00013 Score=75.21 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=100.9
Q ss_pred ccccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHH-hhhhhhhh-hccccEEeecC-CCCeE
Q 018556 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEE-IRDQLYCFEDR-GNRRV 143 (354)
Q Consensus 67 ~~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~-~~~~~g~~-~~~~l~~f~D~-~G~~l 143 (354)
+.+++...+|.... . ....-.+++.+.+++.|...||+|+.++.|...+. +. ..+.. -..+.+++.++ +...-
T Consensus 373 GYdnIp~tlP~~~~-~--g~~~~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~-~l~~~~~~~~~v~L~NPis~e~s 448 (589)
T 3l4g_B 373 GYNNIQMTLPKTYT-I--ANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIAD-KLGVDISATKAVHISNPKTAEFQ 448 (589)
T ss_dssp CGGGSCCCCCCCCC-C--CCCCHHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTG-GGTSCTTSSCCCBBSSCSSGGGS
T ss_pred CcccCCCcCCCccc-c--CCCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHH-HhCCCCCCCCeEEEcCCCchhHh
Confidence 44445555564421 1 11122455688899999999999999999988653 32 22211 01345677666 33456
Q ss_pred eeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCC
Q 018556 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 144 ~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~ 223 (354)
+||+.+.+++.+.++.+.+ ++.|+|+|.+|+|||.+.......+|+.|+++-+.|... .-.++-..+..+++.+|++
T Consensus 449 vmRtsLlpgLL~~l~~N~~-~~~~vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~--~f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 449 VARTTLLPGLLKTIAANRK-MPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNP--GFEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp EECSCSHHHHHHHHHHTTT-SCSCEEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSC--CHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCceEEEEeeeEEecCCccccCCccccEEEEEEECCCC--CHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998765 356999999999999764322346789999887877542 1233445566778888875
No 69
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.86 E-value=9.1e-05 Score=75.38 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCC
Q 018556 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (354)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~ 165 (354)
-.+++..+...+++.|...||.||+||++..... . | ..+.|.+ +--|..+.|+--.-.-.-+.++.-
T Consensus 243 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~--e--g---ga~~F~v-~~~~~~~yL~~Spql~~k~ll~~g----- 309 (548)
T 3i7f_A 243 IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS--E--G---GSNIFEV-KYFDRKAYLAQSPQLYKQMAIMGD----- 309 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------CCBCSCTHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC--C--C---CcceeEE-ecCCCceEeccCHHHHHHHHHhcC-----
Confidence 3578889999999999999999999999987641 1 1 1234432 222444566643322233444422
Q ss_pred CCeEEEEecceeecCCCCCC-cccceEEeeeeE-ec
Q 018556 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMDI-IG 199 (354)
Q Consensus 166 ~PlR~~y~g~VfR~e~~~~G-r~rEf~Q~g~Ei-~g 199 (354)
--|+|++|+|||+|..... +.-||+|+++|. |+
T Consensus 310 -~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~ 344 (548)
T 3i7f_A 310 -FRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIV 344 (548)
T ss_dssp -CCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECS
T ss_pred -cCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhh
Confidence 3599999999999976433 457999999996 55
No 70
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.82 E-value=0.00019 Score=74.05 Aligned_cols=115 Identities=20% Similarity=0.301 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHH-HCCCeEecCCcccchHHhhhhhhhhhccccEEeec-CCCCeEeeCCCCcHHHHHHHHHhCCCC
Q 018556 87 MRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALRPELTPSLARLVIQKGKSV 164 (354)
Q Consensus 87 ~~~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D-~~G~~l~LRpD~T~~iaR~~a~~~~~~ 164 (354)
.+++.++...+++.|. ..||.||+||++.... - .|. .-|.+-. ..|..+.|+--.-.-.-+.++.-
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st-~---~GA----~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g---- 215 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT-P---GGA----KEFLVPSREPGKFYSLPQSPQQFKQLLMVGG---- 215 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC-C---SSS----CCCEEECSSTTCEEECCSSTTHHHHHHHHTS----
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC-C---CCC----cCceeccccCCcccccccCHHHHHHHHHhcc----
Confidence 4677889999999996 7999999999996531 1 121 1243322 24677777732222222233321
Q ss_pred CCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHH
Q 018556 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKR 219 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~ 219 (354)
--|+|++|+|||+|..+..|.-||+|+++|.-..+ ..+++.++.+.+..
T Consensus 216 --~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d----~~d~m~~~E~l~~~ 264 (617)
T 4ah6_A 216 --LDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVD----QTGIQSLIEGLLQY 264 (617)
T ss_dssp --CSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCC----HHHHHHHHHHHHHH
T ss_pred --cCcEEEEEhheecccCCCCcCcceecceeeecCCC----HHHHHHHHHHHHHH
Confidence 23999999999999777778889999999998764 23455555555544
No 71
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=97.73 E-value=0.00018 Score=76.67 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=102.6
Q ss_pred ccccccCCCCC-CCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccc-cEEeecC-CCCeE
Q 018556 67 DLQKIDVNPPK-GTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQ-LYCFEDR-GNRRV 143 (354)
Q Consensus 67 ~~~~~~~~~p~-G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~-l~~f~D~-~G~~l 143 (354)
+.+++...+|. +. ..+......+++.+.+++.+...||.|+.|..|...+.+ ...+. ..+ .+++.++ +...-
T Consensus 473 GydnIp~tlP~~~~--~~~g~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~--~~~~~v~L~NPis~e~s 547 (795)
T 2rhq_B 473 GYDEIPSSLPVFGE--VTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFAL--QERPTISLLMPMSEAHA 547 (795)
T ss_dssp CTTTSCCCCCCCSS--CCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTCS--SCCCCEECSSCSCTTSS
T ss_pred CcccCCccCCCccc--cCCCCCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhCC--CCCceEEEcCCCchhhh
Confidence 44445555553 21 122223345667888999999999999998877766544 22321 234 5777766 33456
Q ss_pred eeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCC--------hhhH-HHHHHHHH
Q 018556 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAE-AELISSII 214 (354)
Q Consensus 144 ~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~--------~~aD-aEvi~l~~ 214 (354)
+||+.+.+.+.+.++.+......|+|+|.+|+|||.+....++ .|+.|+++=+.|... ...| .++-.++.
T Consensus 548 vLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le 626 (795)
T 2rhq_B 548 TLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVD 626 (795)
T ss_dssp EECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHH
Confidence 9999999999999998765556799999999999964321123 899999988888631 1133 45677778
Q ss_pred HHHHHhcC
Q 018556 215 TFFKRIGI 222 (354)
Q Consensus 215 e~l~~lgl 222 (354)
.+++.+|+
T Consensus 627 ~ll~~lG~ 634 (795)
T 2rhq_B 627 RVAEKLNL 634 (795)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 88888886
No 72
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.56 E-value=9.2e-05 Score=70.81 Aligned_cols=138 Identities=15% Similarity=0.198 Sum_probs=90.3
Q ss_pred cccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchH-Hhhhh-hh-hhh---ccccEEeecCCCCeE
Q 018556 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRK-AG-EEI---RDQLYCFEDRGNRRV 143 (354)
Q Consensus 70 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~-~~~~~-~g-~~~---~~~l~~f~D~~G~~l 143 (354)
.++..+|.+-... ....-...+.+.++++|...||+++.+|.++... .|... .. ++. .+..|.+. ...
T Consensus 91 ~id~TLP~~~~~~--G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~----e~~ 164 (327)
T 3pco_A 91 TIDVSLPGRRIEN--GGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD----TTR 164 (327)
T ss_dssp CCCTTSCCCCCCC--CCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS----SSC
T ss_pred CCCCcCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC----CCc
Confidence 3555555443222 2224466788999999999999999999886522 22210 00 010 12344442 457
Q ss_pred eeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHh
Q 018556 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (354)
Q Consensus 144 ~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~l 220 (354)
+||..+++..+|.++.+ ..|+|+|.+|+|||.+ ....+.-+|+|+..-++|.+.. -.++-.++..+++.+
T Consensus 165 vLRThtsp~~lr~l~~~----~~pirifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~--f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 165 LLRTQTSGVQIRTMKAQ----QPPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNIS--FTNLKGTLHDFLRNF 234 (327)
T ss_dssp EECSCTHHHHHHHHTTC----CSSCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCC--HHHHHHHHHHHHHHH
T ss_pred eecccCCHHHHHHHHhC----CCCeeEEeeccEEecC-CCcccCCcccEEEEEEECCCCC--HHHHHHHHHHHHHHH
Confidence 99999999999998653 4699999999999987 3455677899987666664322 344556666666666
No 73
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=97.32 E-value=0.0011 Score=70.39 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=98.5
Q ss_pred ccccccCCCCCCCc-CCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEe
Q 018556 67 DLQKIDVNPPKGTR-DFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVA 144 (354)
Q Consensus 67 ~~~~~~~~~p~G~~-d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~ 144 (354)
+.+++...+|.+.. ...+ .....+++.+.+++.+...||.|+.|-.|...+.+ ...+. ..+.+++.++ +...-+
T Consensus 468 GydnIp~~~p~~~~~~~~~-~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~--~~~~v~L~NPis~d~sv 543 (785)
T 1b7y_B 468 GYETIPLALPAFFPAPDNR-GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFRL--DPPRLLLLNPLAPEKAA 543 (785)
T ss_dssp CGGGSCCCCCCCCCCGGGS-STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTTC--CCCSCEESSCSSTTSSE
T ss_pred CcccCCccCCCcccccccc-cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHH-HhcCC--CCCeEEEcCCCchhhhh
Confidence 34445555665410 1111 23345667888999999999999988776665444 22221 2345677665 345568
Q ss_pred eCCCCcHHHHHHHHHhCCCC-CCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCCh-------hhH-HHHHHHHHH
Q 018556 145 LRPELTPSLARLVIQKGKSV-SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV-------TAE-AELISSIIT 215 (354)
Q Consensus 145 LRpD~T~~iaR~~a~~~~~~-~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~-------~aD-aEvi~l~~e 215 (354)
||+.+.+.+.+.++.+.+.. ..|+|+|.+|+||| + .|+.|+++=+.|.... ..| .++-..+..
T Consensus 544 LRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ 615 (785)
T 1b7y_B 544 LRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEA 615 (785)
T ss_dssp ECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHH
Confidence 99999999999999875443 57999999999999 2 7899999988886411 133 456677778
Q ss_pred HHHHhcC
Q 018556 216 FFKRIGI 222 (354)
Q Consensus 216 ~l~~lgl 222 (354)
+++.+|+
T Consensus 616 ll~~lgi 622 (785)
T 1b7y_B 616 LFARLGL 622 (785)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 8888876
No 74
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=97.10 E-value=0.0032 Score=62.02 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHC--------CCeEecC-Ccccch-HHhhhhhhh---hh---ccccEEeecCCCCeEeeCCCCcHH
Q 018556 89 LRNWLFHNFQEVSRLF--------GFEEVDF-PVLESE-ALFIRKAGE---EI---RDQLYCFEDRGNRRVALRPELTPS 152 (354)
Q Consensus 89 ~~~~i~~~l~~vf~~~--------Gy~eI~t-P~le~~-~~~~~~~g~---~~---~~~l~~f~D~~G~~l~LRpD~T~~ 152 (354)
-...+.+.++++|... ||+++.+ |.++.. +.|... +- +. ....|.+. ...+||..+++.
T Consensus 49 Pl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L-~~p~dHpaR~~~Dtfyi~----~~~vLRThts~~ 123 (415)
T 3cmq_A 49 PLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSL-LIPADHPSRKKGDNYYLN----RTHMLRAHTSAH 123 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGG-TCCTTCGGGCGGGSCBSS----SSEEECSSGGGG
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHh-CCCCCCCcccccceEEec----CCeEEcCCCcHH
Confidence 3566777777777766 9999998 666653 344321 11 11 13445442 347999999999
Q ss_pred HHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEe-eeeEe
Q 018556 153 LARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQW-NMDII 198 (354)
Q Consensus 153 iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~-g~Ei~ 198 (354)
.+|++..+ .| |++.+|+|||.+.....+..+|+|. |+-++
T Consensus 124 ~~~~l~~~-----~~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 124 QWDLLHAG-----LD-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp HHHHHHTT-----CS-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEE
T ss_pred HHHHHHHC-----CC-CEEEeeeEEeccchhhhhhHHhcCCCcEEEE
Confidence 99998753 25 9999999999987677788999987 66664
No 75
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=95.98 E-value=0.034 Score=59.05 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecC-CCCeEeeCCCCcHHHHHHHHHhCCCCCCCeEEE
Q 018556 93 LFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLKWF 171 (354)
Q Consensus 93 i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~-~G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~ 171 (354)
..+.+++.+...||.|+.|-+|...+.+.. .+. ..+..++.++ +...=+||+.+.+++...++.+.+....++|+|
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~-~~~--~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lF 570 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQM-IHP--GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIF 570 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHH-HSS--SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHh-hCC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEE
Confidence 456778888889999999988877665432 221 2345666666 445568999999999999998876556789999
Q ss_pred EecceeecCCCCCCcccceEEeeeeEeccCC--------hhhH-HHHHHHHHHHHHHhcC
Q 018556 172 AVGQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAE-AELISSIITFFKRIGI 222 (354)
Q Consensus 172 y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~--------~~aD-aEvi~l~~e~l~~lgl 222 (354)
.+|+||..+......++|...+++=+.|... ...| .++-..+..++..+|+
T Consensus 571 EiG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 571 ESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGK 630 (795)
T ss_dssp EEEEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSC
T ss_pred EeeeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999998764322346788888888877532 2234 4556666777788886
No 76
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=34.96 E-value=2.9e+02 Score=25.85 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHH-----HCCCeEecCCcccchHH-hhh-hhhhhhccccEEeecCCCCeEeeCCCCcHHHH---HHHH
Q 018556 89 LRNWLFHNFQEVSR-----LFGFEEVDFPVLESEAL-FIR-KAGEEIRDQLYCFEDRGNRRVALRPELTPSLA---RLVI 158 (354)
Q Consensus 89 ~~~~i~~~l~~vf~-----~~Gy~eI~tP~le~~~~-~~~-~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~ia---R~~a 158 (354)
..+.....+++.|+ ..|+.+|..|+|..... +.. ..|.+ ..=-|.+.|-.|..+ +++-++| |+..
T Consensus 7 ~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~E-rpV~f~i~~~~~~~~----eivhSLaKWKR~aL 81 (330)
T 12as_A 7 AKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAE-KAVQVKVKALPDAQF----EVVHSLAKWKRQTL 81 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTC-CCCEECCSSSTTCCE----EECSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCce-ecceEecccCCCceE----EEeeeHHHHHHHHH
Confidence 34455566666666 99999999999877431 111 11211 111233333334433 2233333 3333
Q ss_pred HhCCCCCCCeEEEEecceeecCCC--CCCcccceEEeeeeEeccCC
Q 018556 159 QKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVPA 202 (354)
Q Consensus 159 ~~~~~~~~PlR~~y~g~VfR~e~~--~~Gr~rEf~Q~g~Ei~g~~~ 202 (354)
.+.. ...--++|..-+..|.+.. ..-+.-++.|+|.|.+....
T Consensus 82 ~~y~-f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~ 126 (330)
T 12as_A 82 GQHD-FSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDG 126 (330)
T ss_dssp HHTT-CCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTT
T ss_pred HhCC-CCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEecccc
Confidence 3332 2345699998998997643 33478899999999998754
No 77
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=34.04 E-value=55 Score=23.72 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=25.0
Q ss_pred cCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCH
Q 018556 200 VPAVTAEAELISSIITFFKRIGITASDVGFRISSR 234 (354)
Q Consensus 200 ~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~ 234 (354)
....+.-.|++.++...++.+|.+ ++.+++|.+
T Consensus 56 aendeqakelleliarllqklgyk--dinvrvngt 88 (96)
T 2jvf_A 56 AENDEQAKELLELIARLLQKLGYK--DINVRVNGT 88 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCS--EEEEEEETT
T ss_pred ecChHHHHHHHHHHHHHHHHhCCC--ceEEEEcCE
Confidence 344455678999999999999987 777777653
No 78
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=31.41 E-value=1.2e+02 Score=24.09 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=37.9
Q ss_pred CCChhhHhHHHHHHHHhcc----CCHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Q 018556 245 SIPEHLFGKVCIIIDKIEK----LPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293 (354)
Q Consensus 245 gl~~~~~~~v~~~ld~~~~----~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~ 293 (354)
.++++++....++.+++++ ++-++++..+.+.|++.+.++.+.++.+..
T Consensus 26 ~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d 78 (121)
T 3fia_A 26 AITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMN 78 (121)
T ss_dssp CCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCC
Confidence 3666777777667666654 346788999989999999999999998775
No 79
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=29.75 E-value=1.1e+02 Score=22.27 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=33.8
Q ss_pred CChhhHhHHHHHHHHhc-----cCCHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Q 018556 246 IPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293 (354)
Q Consensus 246 l~~~~~~~v~~~ld~~~-----~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~ 293 (354)
+++++...+.++...++ +++.++++..|...|++.+.++.+.+..+..
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d 56 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTK 56 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 34455555555555554 3567889999998999988888888877653
No 80
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=27.84 E-value=2e+02 Score=21.72 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=33.9
Q ss_pred CChhhHhHHHHHHHHhc----cCCHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Q 018556 246 IPEHLFGKVCIIIDKIE----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293 (354)
Q Consensus 246 l~~~~~~~v~~~ld~~~----~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~ 293 (354)
+++++...+.++.+.++ +++.++++..|...|++.+.++.+.+..+..
T Consensus 9 ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d 60 (106)
T 1eh2_A 9 VKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDID 60 (106)
T ss_dssp SCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCC
Confidence 44555555555554443 3567889999999999998888888887764
No 81
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=27.57 E-value=1.2e+02 Score=28.36 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=7.2
Q ss_pred HHHHHcCCCHHHHHH
Q 018556 271 NDLKSAGMSEAAIEE 285 (354)
Q Consensus 271 ~~L~~~g~s~~~~~~ 285 (354)
..|..+|++.+.+-+
T Consensus 83 ~~L~~LGls~e~V~k 97 (335)
T 4fp9_B 83 SEFILLGLNPEPVCV 97 (335)
T ss_dssp HHHHHTTCCHHHHHH
T ss_pred HHHHHcCCCHHHHHH
Confidence 344455555544433
No 82
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=25.18 E-value=86 Score=29.10 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHcCCCc
Q 018556 304 ADLKLLFSLAEKFGYSD 320 (354)
Q Consensus 304 ~~L~~l~~~l~~~g~~~ 320 (354)
++|...+++|+.+|+..
T Consensus 121 ~~l~p~v~fL~~lGl~~ 137 (343)
T 3mva_O 121 LNLENNIKFLYSVGLTR 137 (343)
T ss_dssp HHHHHHHHHHHHTTCCH
T ss_pred hhHHHHHHHHHHhCCCH
Confidence 36788888888888864
No 83
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=24.11 E-value=14 Score=24.32 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=22.2
Q ss_pred ccccccccccccccccCCCCCCcccCCccccC
Q 018556 4 IHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLL 35 (354)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (354)
-|+.|++-+..+.+..+.--|.||.+|+++..
T Consensus 6 ~~~~l~sPf~~Li~aA~~~NP~qF~LP~el~~ 37 (45)
T 2l9s_A 6 VQPQLRRPFELLIAAAMERNPTQFQLPNELTC 37 (45)
T ss_dssp CCCCCCCHHHHHHHHHHHSSCCCSSCCCSSCS
T ss_pred cccccCCHHHHHHHHHHHhChhhhcCCccccc
Confidence 36666655555666666677899999997543
No 84
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=23.82 E-value=28 Score=33.18 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=15.5
Q ss_pred EecCCCC--CCCCccceeEE
Q 018556 324 FDASVVR--GLAYYTGIVFE 341 (354)
Q Consensus 324 ~Dlslvr--~l~YYTGivFe 341 (354)
+|+.+++ |.+||+|++|.
T Consensus 225 ~d~~~~~~~G~~~~~gt~~~ 244 (401)
T 1evl_A 225 IEFTLYDCLDRAWQCGTVQL 244 (401)
T ss_dssp EEEEEECTTCCEEEEEEEEE
T ss_pred cCeEEEecCCCeEEeeeeee
Confidence 6777888 99999999983
No 85
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.71 E-value=1.8e+02 Score=20.76 Aligned_cols=47 Identities=6% Similarity=0.078 Sum_probs=32.1
Q ss_pred ChhhHhHHHHHHHHhcc-----CCHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Q 018556 247 PEHLFGKVCIIIDKIEK-----LPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293 (354)
Q Consensus 247 ~~~~~~~v~~~ld~~~~-----~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~ 293 (354)
++++...+.++.+.+++ ++.++++..|...|++.+.++.+.+..+..
T Consensus 4 s~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d 55 (92)
T 1fi6_A 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFD 55 (92)
T ss_dssp CHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 44455555555555443 457788888888899888888887777654
No 86
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=22.21 E-value=2e+02 Score=26.20 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=37.4
Q ss_pred CCCeEEEEecceeecCCCCCC----cccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCC
Q 018556 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~G----r~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~ 224 (354)
+.|.+.+|+.++.|....+-| |.-.++|.-+=+ .+++.. +-.+..++|+.+||+.
T Consensus 57 pepw~~AYVqPsRRP~DGRYGeNPNRLq~y~QfQVil--KPsP~n---iQeLYL~SL~alGid~ 115 (298)
T 1j5w_A 57 KGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVII--KPSPEN---SQELYLESLEYLGINL 115 (298)
T ss_dssp SSCEEEEEEEEEECCC-----CCTTCCSEEEEEEEEE--ESCCSS---HHHHHHHHHHHTTCCT
T ss_pred CCcceeeeeccCCCCCCCCcCCCchhhhhheeeEEEE--CCCCcc---HHHHHHHHHHHhCCCc
Confidence 579999999999997643333 667788876544 344433 3457889999999863
No 87
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=21.36 E-value=2.1e+02 Score=26.16 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=39.2
Q ss_pred CCCeEEEEecceeecCCCCCC----cccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCC
Q 018556 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (354)
Q Consensus 165 ~~PlR~~y~g~VfR~e~~~~G----r~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~ 223 (354)
+.|.+.+|+.++.|....+-| |.-.++|.-+=+ .+++.. +-.+..++|+.+||+
T Consensus 69 pePw~~AYVqPsRRP~DGRYGeNPNRLq~yyQfQVil--KPsP~n---iQeLYL~SL~alGId 126 (311)
T 3rf1_A 69 KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLI--KPSPDN---IQELYLKSLENLGFD 126 (311)
T ss_dssp SSCEEEEEEEEEECGGGCCTTCCSSCCSEEEEEEEEE--ESCCTT---HHHHHHHHHHHTTCC
T ss_pred CCcceeeeeccCCCCCCCCcCCCchhhhhheeeEEEE--cCCCcc---HHHHHHHHHHHhCCC
Confidence 679999999999997543333 667788876544 344433 356789999999986
Done!