RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018556
(354 letters)
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 347 bits (892), Expect = e-117
Identities = 143/279 (51%), Positives = 195/279 (69%), Gaps = 6/279 (2%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
++ P +G RDFPPE MR R LF F ++ FGFEE D PVLESE L+IRKAGEEI
Sbjct: 25 NMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEI 84
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRR 188
+Q++ F +G RVALRPE+TPSLARL++ KG+S+ LP KW+++ QCWRYE +TRGRRR
Sbjct: 85 TEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRR 144
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
EHYQWNMDI+GV +V+AE EL+ + + +G+++ DVG +++SRKVLQ V+ +
Sbjct: 145 EHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTS 204
Query: 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL------EGEA 302
F VC+I+DK+EK+P + ++ L G+ ++ + LS+KS+ E+ E EA
Sbjct: 205 DKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEEHEA 264
Query: 303 VADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
V +L+ F E +GY DW+ FDASVVRGLAYYTGIVFE
Sbjct: 265 VKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFE 303
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 309 bits (795), Expect = e-103
Identities = 99/280 (35%), Positives = 155/280 (55%), Gaps = 12/280 (4%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
++ + +G RDF PEDM + ++F +E + FGF +DFP LE L+ K+GEE+
Sbjct: 2 YRLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEEL 61
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRR 188
Q Y F D+G R V L PE TPS R+V + K + PL+W++ + WRYE GR R
Sbjct: 62 LQQTYSFVDKGGREVTLIPEATPSTVRMVTSR-KDLQRPLRWYSFPKVWRYEEPQAGRYR 120
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
EHYQ+N DI G + A+AE+I+ + R+G+ RI+SRK+++E++ +
Sbjct: 121 EHYQFNADIFGSDSPEADAEVIALASSILDRLGLQ-DIYEIRINSRKIMEEIIG--GMTS 177
Query: 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLS-------IKSLTELEGE 301
V IID+ K+ + + L+SAG+ E + + + S + +T E
Sbjct: 178 SDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSE 237
Query: 302 AVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
+A + + L +G +++D S+VRGL+YYTGIVFE
Sbjct: 238 EIARMAAVEDLLASYGV-KNVRYDFSIVRGLSYYTGIVFE 276
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 304 bits (781), Expect = e-101
Identities = 70/307 (22%), Positives = 131/307 (42%), Gaps = 36/307 (11%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE-- 126
KI+ + P G +F P + RL +L + V +GF ++ P +E + K +
Sbjct: 8 DKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGD 67
Query: 127 ------------EIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVG 174
+ + D G+ AL+ + T LA + + ++ P + +
Sbjct: 68 NIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMD 127
Query: 175 QCWRYERMTRGRRREHYQWNMDIIGV--PAVTAEAELISSIITFFKRIGITASDVGFRIS 232
+R ER GR R+ Q ++D++G ++ +A++ + I F+ + I D RI+
Sbjct: 128 VVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIG--DFVIRIN 185
Query: 233 SRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSI 292
+RKVL + +I E IID +EK+ +K +L+ G++ ++++ + I
Sbjct: 186 NRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKI 245
Query: 293 K--------SLTELEG---------EAVADLKLLFSLAEKFGYSD-WIQFDASVVRGLAY 334
L L V++L+ + + G D D ++ RGL Y
Sbjct: 246 DGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNY 305
Query: 335 YTGIVFE 341
YTG V+E
Sbjct: 306 YTGTVYE 312
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 275 bits (705), Expect = 3e-90
Identities = 67/280 (23%), Positives = 127/280 (45%), Gaps = 18/280 (6%)
Query: 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYC 134
P G RD PE + + + E L+G++ ++ P LE + QL+
Sbjct: 12 KPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETV-GVVSAILDQQLFK 70
Query: 135 FEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWN 194
D+ + LRP++T +ARLV K + PL+ +R ++ G+ E Q
Sbjct: 71 LLDQQGNTLVLRPDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLG 130
Query: 195 MDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKV 254
+++IG +A+ E+I+ +I KR G++ + I + +L E ++
Sbjct: 131 VELIGDGTASADGEVIALMIAALKRAGLS--EFKVAIGHVGYVNALLMDVVGNEQRADRL 188
Query: 255 CIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK------------SLTELEGEA 302
+ + + +KS +S L+ +LS++ TE A
Sbjct: 189 RRFLYEKNYVGYR---EHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQTEKGKTA 245
Query: 303 VADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
+A++ L+ + E +G S++++FD ++V ++YYTG+VFEG
Sbjct: 246 LAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEG 285
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 242 bits (619), Expect = 1e-77
Identities = 66/328 (20%), Positives = 112/328 (34%), Gaps = 38/328 (11%)
Query: 46 ASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFG 105
++ NG RS + + V + P G +D P+ + R + G
Sbjct: 1 SNAMNGTRSAWGARAWEAVRGFADR-----PPGMQDGYPDFAKRRRAVETRLLSFVEDAG 55
Query: 106 FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165
+E V + E +R E D G VALRPE+TPS+AR+ + +
Sbjct: 56 YEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGR 115
Query: 166 LPLKWFAVGQCWRYER------MTRGRRREHYQWNMDIIGVPA-VTAEAELISSIITFFK 218
P++W + +R G+ E Q ++ IG A V + +++ +
Sbjct: 116 TPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASA 175
Query: 219 RIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGM 278
G+ +S +++ +L I L + + + + +
Sbjct: 176 AAGVR--HHRIVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQLHAAKDV 233
Query: 279 SEAA-----------------------IEELLRVLSIKSLTELEGEAVADLKLLFSLAEK 315
A +E LLR +A L L
Sbjct: 234 DLLANLLTWSPAERDAAKRSREASDRELEALLRDAVDPRAAADVRDAWRYLCRLAEALHD 293
Query: 316 FGY-SDWIQFDASVVRGLAYYTGIVFEG 342
G SD + FD ++ R L YYTG+VFE
Sbjct: 294 SGLASDVVTFDLALHRELDYYTGLVFEM 321
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 198 bits (505), Expect = 5e-61
Identities = 53/302 (17%), Positives = 113/302 (37%), Gaps = 23/302 (7%)
Query: 53 RSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFP 112
R + ++KI+ P+ + + ++ + +++ L ++EV P
Sbjct: 2 RGSHHHHHHGSIEGRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPP 61
Query: 113 VLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLK 169
E L+ +++++ F + + LR + T L RL Q S +
Sbjct: 62 SFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKD--STSAR 119
Query: 170 WFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA----- 224
+ G+ +R E+ +GR E+YQ +++ G A +E E++S + +++G+
Sbjct: 120 YSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGLNKTVFEI 179
Query: 225 SDVGF---RISSRKVLQEVLRCHSIPEHLFGKVCIIIDK-IEKLPLDVIKNDLKSAGMSE 280
F E+L + + L G + I+K L + + +E
Sbjct: 180 GSAKFFQRLCQLADGSTELLTELLLKKDLSG-LNAFIEKNNFSKELRGL--LKEIFITNE 236
Query: 281 AAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVF 340
+ E + ++ L +EK I D +V + YYT ++F
Sbjct: 237 LSRLEN------LVTNTKDDVLISSFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMF 290
Query: 341 EG 342
+
Sbjct: 291 KA 292
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 176 bits (448), Expect = 3e-53
Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 11/184 (5%)
Query: 61 PSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLF---GFEEVDFPVLESE 117
P + ++ K + E+ N+L +E++R F GF E+ P+L
Sbjct: 49 GKPFRELESELLSRRKKDLQQIYAEERE--NYLGKLEREITRFFVDRGFLEIKSPILIPL 106
Query: 118 ALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCW 177
+ G + +L R ++ LRP LTP+L + + +++ P+K F +G C+
Sbjct: 107 EYI-ERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCY 165
Query: 178 RYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVL 237
R E + E +G E I I F +GI V S V
Sbjct: 166 RKESDGKEHLEEFTMLVFWQMGSGCTRENLESI--ITDFLNHLGIDFKIV---GDSCMVF 220
Query: 238 QEVL 241
+ L
Sbjct: 221 GDTL 224
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 172 bits (439), Expect = 4e-52
Identities = 42/262 (16%), Positives = 91/262 (34%), Gaps = 30/262 (11%)
Query: 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 146
+ +F + + ++ GF P LE EE F DR ++R
Sbjct: 4 LDFEK-VFSFYSKATK-KGFSPFFVPALEK--------AEEP--AGNFFLDRKGNLFSIR 51
Query: 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAE 206
+ T ++ + +K + +RY YQ ++ + ++
Sbjct: 52 EDFTKTVLNHRKRYSPD--SQIKVWYADFVYRYSG---SDLVAEYQLGLEKVPRNSLDDS 106
Query: 207 AELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPL 266
E++ I+ V I V +++L+ IP+ L KV +ID +
Sbjct: 107 LEVLEIIVESASEFFEG--PVIVEIGHTGVYEDLLK--EIPKDLHEKVLNLIDTKNLAEI 162
Query: 267 DVIKNDLKSAGMSEAAIEELLRVLSIKSLTE------LEGEAVADLKLLFSLAEKFGYSD 320
+ + + + +E+++ + E L DL S ++ +
Sbjct: 163 EFL---SHMKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEKFPTV 219
Query: 321 WIQFDASVVRGLAYYTGIVFEG 342
++ D ++ R + Y G++F
Sbjct: 220 SVEIDLTLARTIEEYCGLIFTI 241
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 143 bits (362), Expect = 3e-39
Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 35/286 (12%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IR 129
+GT+D +++R+ + ++V G E+ P+ E +F + G +R
Sbjct: 3 ARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVR 62
Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKG-KSVSLPLKWFAVGQCWRYERMTRGRRR 188
+++ F+DRG R + LRPE T ++ R ++ G K P++ + G +R ER +GR R
Sbjct: 63 KEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYR 122
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISS----------RKVLQ 238
+ +Q N + +G +AE + + K +G+ + ++SS L+
Sbjct: 123 QFHQVNYEALGSENPILDAEAVVLLYECLKELGLR--RLKVKLSSVGDPEDRARYNAYLR 180
Query: 239 EVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTE- 297
EVL H + +++E+ P+ ++ D KS + LL+ L ++ + +
Sbjct: 181 EVLSPH---REALSEDS--KERLEENPMRIL--DSKSERD-----QALLKELGVRPMLDF 228
Query: 298 LEGEAVADLKLLFSLAEKFGYSDWIQF--DASVVRGLAYYTGIVFE 341
L EA A LK + E+ + + + ++VRGL YY FE
Sbjct: 229 LGEEARAHLKEVERHLERLS----VPYELEPALVRGLDYYVRTAFE 270
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 141 bits (359), Expect = 8e-39
Identities = 71/290 (24%), Positives = 120/290 (41%), Gaps = 39/290 (13%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE- 127
+ I +G D+ P + + + + V +G+ E+ P++E LF R GE
Sbjct: 2 KNI--QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVT 59
Query: 128 --IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRG 185
+ ++Y FEDR + LRPE T R I+ G + + + +G +R+ER +G
Sbjct: 60 DVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKG 119
Query: 186 RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISS----------RK 235
R R+ +Q ++ G+ +AELI +++ +GI+ V ++S R
Sbjct: 120 RYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIS-EHVTLELNSIGSLEARANYRD 178
Query: 236 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIE--ELLRVLSIK 293
L L H + + C ++ PL V+ D K+ + + L L +
Sbjct: 179 ALVAFLEQH---KEKLDEDC--KRRMYTNPLRVL--DSKNPEVQALLNDAPALGDYLDEE 231
Query: 294 SLTELEGEAVADLKLLFSLAEKFGYSDWIQF--DASVVRGLAYYTGIVFE 341
S G L L A I + + +VRGL YY VFE
Sbjct: 232 SREHFAG-----LCKLLESAG-------IAYTVNQRLVRGLDYYNRTVFE 269
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 141 bits (357), Expect = 1e-38
Identities = 71/287 (24%), Positives = 137/287 (47%), Gaps = 38/287 (13%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IR 129
+ P+GT+D PED + ++ + E+ + ++E+ P+ ES LF R G+ ++
Sbjct: 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQ 61
Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKG--KSVSLPLKWFAVGQCWRYERMTRGRR 187
++Y F+D+G+R + LRPE T ++ R I+ + + P+K + G +RYER +GR
Sbjct: 62 KEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRY 121
Query: 188 REHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISS----------RKVL 237
R+ Q+ ++ IG + +AE+++ ++ ++ G+ + I+S + L
Sbjct: 122 RQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLK--HLKLVINSVGDMASRKEYNEAL 179
Query: 238 QEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTE 297
+ H F C ++ P+ ++ D K EA + + +T+
Sbjct: 180 VKHFEPV---IHEFCSDC--QSRLHTDPMRIL--DCKVDRDKEA-------IKTAPRITD 225
Query: 298 -LEGEAVADLKLLFSLAEKFGYSDWIQF--DASVVRGLAYYTGIVFE 341
L E+ A + + + + G I + D ++VRGL YYT FE
Sbjct: 226 FLNEESKAYYEQVKAYLDDLG----IPYTEDPNLVRGLDYYTHTAFE 268
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 138 bits (349), Expect = 4e-37
Identities = 73/304 (24%), Positives = 131/304 (43%), Gaps = 36/304 (11%)
Query: 55 GARSLSPSPVSDDLQKID-VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPV 113
A++ P +++ +K++ + KG D P+D L + + + R +G++ + P+
Sbjct: 13 EAQTQGPGSMTEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPI 72
Query: 114 LESEALFIRKAGEE---IRDQLYCFEDRGN-RRVALRPELTPSLARLVIQKGKSVSLPLK 169
+E LF R GE + ++Y F D N + LRPE T ++ R I+ P +
Sbjct: 73 VEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKR 132
Query: 170 WFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGF 229
+ +G +R+ER RGR R+ +Q ++ +G A+AE++ ++ +G+T +
Sbjct: 133 LWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLT--GIKL 190
Query: 230 RISS----------RKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMS 279
I+S R L + L H ++ PL V+ D K+ +
Sbjct: 191 EINSLGLAEERAAHRVELIKYLEQH---ADKLDDDA--QRRLYTNPLRVL--DTKNPALQ 243
Query: 280 EAAIE--ELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTG 337
E +L+ L S E + +LL + F + +VRGL YY
Sbjct: 244 EIVRNAPKLIDFLGDVSRAHF--EGL--QRLLKANNVPF------TINPRLVRGLDYYNL 293
Query: 338 IVFE 341
VFE
Sbjct: 294 TVFE 297
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 64.5 bits (157), Expect = 7e-12
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 15/168 (8%)
Query: 75 PPKGTRDFP----PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG---EE 127
+G R + L + GF +V P + +++ +
Sbjct: 54 MSQGKRHLEQLRTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHP 113
Query: 128 IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRR 187
+ Q++ + + LRP L P+L L + + P++ F +G C+R E
Sbjct: 114 LFSQVFWLDGKK----CLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQHL 169
Query: 188 REHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRK 235
E N+ +G P L + GI F + +
Sbjct: 170 NEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIR----EFELVTES 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 6e-07
Identities = 55/356 (15%), Positives = 106/356 (29%), Gaps = 103/356 (28%)
Query: 83 PPEDMRLRN--WLFHNFQE--VSRLFG-FEEVDFPVLES-------EALFIRKAGEEIRD 130
W + QE V + +++ L S + + + E RD
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 131 QLY----CFEDRGNRRVALRPELTPSLARL------VIQ----KGKSV-------SLPLK 169
+LY F R+ +L +L L +I GK+ S ++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 170 --------WFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAEL-ISSIITFFKRI 220
W + C E + ++ YQ + + ++ +L I SI +R+
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 221 GITASDVGFRISSRK------VLQEVLRCHSIPEHL--FGKVC---------IIIDKIEK 263
+ S+ VL V + F C + D +
Sbjct: 238 ----------LKSKPYENCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 264 LPLDVIKNDLKSAGMSEAAIEELL-RVLSIKSLTELEGEAVADLKLLFSL-AEKF--GYS 319
I D S ++ ++ LL + L + +L E + S+ AE G +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 320 DWIQF------------DASV-------VRGLAYYTGIVF-EGRKVESN----LWG 351
W + ++S+ R + + VF + + +W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWF 397
Score = 32.9 bits (74), Expect = 0.18
Identities = 55/424 (12%), Positives = 108/424 (25%), Gaps = 142/424 (33%)
Query: 5 HSSLSFYMKPLFLSNSSL--FPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPS 62
+S S + + L S+ R+ K Y L L + N
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLVLLNVQNAK------------ 257
Query: 63 PVSD--DLQ-KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL 119
+ +L KI + TR D L + E ++L
Sbjct: 258 -AWNAFNLSCKILLT----TRFKQVTD-FLSAATTTHISLDHHSMTLTPD-----EVKSL 306
Query: 120 FIRKAGEEIRDQLYCFEDRGNRRVALRPELT---PSLARLVIQKGKSVS-LPLKWFAVGQ 175
++ +D L E+ P +I +S+ W
Sbjct: 307 LLKYLDCRPQD--------------LPREVLTTNP-RRLSII--AESIRDGLATW----D 345
Query: 176 CWRY---ERMTRGRR-----------REHYQ-------------------W-NMDIIGVP 201
W++ +++T R+ + W ++ V
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 202 AVTAEAELISSIITFFKRIGITASDVGFRISS---------RKVLQ--EVLRCHS----- 245
V + S + K I+ + + R ++ + +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 246 -----------IPEHLFGKVCIIIDKIEKLP---LDV--IKNDLKSAGMSEAAIEELLRV 289
I HL K +++ LD ++ ++ + A +L
Sbjct: 466 PPYLDQYFYSHIGHHL--KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 290 LS---------IKSLTELEGEAVADLKLLFSLAEKF---GYSDWIQFDASVVRGLAYYTG 337
L + + E A L L + E Y+D ++ L
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI------ALMAEDE 577
Query: 338 IVFE 341
+FE
Sbjct: 578 AIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 3e-05
Identities = 80/485 (16%), Positives = 138/485 (28%), Gaps = 201/485 (41%)
Query: 4 IHSSLSFYMKPLFLSNSSLFPRKFTVPKEYL---------LNPRSLCALSSASNQN---- 50
IH+ + L N + + + K Y+ + +S AL A +
Sbjct: 101 IHALAA----KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 51 ----GGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGF 106
GG Q G D ++ F+E+ L+
Sbjct: 157 VAIFGG----------------Q--------GNTD---------DY----FEELRDLY-- 177
Query: 107 EEVDFPVLESEALFIRKAGEEIRDQLYCFED------RG-NRRVALR-PELTPSLARLVI 158
+ ++ I+ + E + + + D +G N L P TP L+
Sbjct: 178 -QTYHVLVGD---LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL- 232
Query: 159 QKGKS--VSLPLKWFAVGQCWRYER------MTRGRRREHYQW----NMDIIGVPAVTAE 206
S +S PL V Q Y T G R + + + ++ AE
Sbjct: 233 ----SIPISCPL--IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV-TAVAIAE 285
Query: 207 A-------ELISSIIT--FFKRIGI----TASDVGFRIS--------------------- 232
+ IT FF IG+ + S
Sbjct: 286 TDSWESFFVSVRKAITVLFF--IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 233 -SRKVLQEVLR---CH-------SI--------------PEHLFG--------KVCIIID 259
+++ +Q+ + H I P+ L+G K +D
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 260 --KI----EK-------LP-------------LDVIKNDLKSAGMSEAAIEEL------- 286
+I K LP D+I DL +S A +++
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA-KDIQIPVYDT 462
Query: 287 -----LRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
LRVLS S++E + + L + + +F + + F GL T +
Sbjct: 463 FDGSDLRVLS-GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 342 GRKVE 346
G V
Sbjct: 522 GTGVR 526
Score = 38.9 bits (90), Expect = 0.003
Identities = 38/262 (14%), Positives = 73/262 (27%), Gaps = 105/262 (40%)
Query: 143 VALRPELTPSLARLVIQKGK---SVSLPLK-WFAVGQCWRYERMTRGRRREHYQWNMDII 198
+ RP L + G + +P +F Q + + +
Sbjct: 4 YSTRP--------LTLSHGSLEHVLLVPTASFFIASQ----------LQEQFNKI----- 40
Query: 199 GVPAVT----------AEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRC----- 243
+P T AEL+ + + + + S VG +VL L
Sbjct: 41 -LPEPTEGFAADDEPTTPAELVGKFLGYVSSL-VEPSKVG---QFDQVLNLCLTEFENCY 95
Query: 244 ------HSIPEHLFGKVCIIIDKIEKL-------------PLDVIKND--LKSA------ 276
H++ L + + K ++L P D N ++
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 277 --------GMSEAAIEELLRVLSIKSLTELEGEAVADL-----KLLFSLAE-----KFGY 318
G ++ EEL + L + V DL + L L + +
Sbjct: 156 LVAIFGGQGNTDDYFEEL------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 319 S------DWIQFDASVVRGLAY 334
+ +W++ + S Y
Sbjct: 210 TQGLNILEWLE-NPSNTPDKDY 230
Score = 38.9 bits (90), Expect = 0.003
Identities = 66/406 (16%), Positives = 108/406 (26%), Gaps = 176/406 (43%)
Query: 12 MKPLFLSNSSLFPRKFTVPKEY-LLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQK 70
+PL LS+ SL E+ LL P + AS Q + + K
Sbjct: 6 TRPLTLSHGSL---------EHVLLVPTAS--FFIAS-Q--------------LQEQFNK 39
Query: 71 IDVNPPKGTRDFPPED-----MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG 125
I P T F +D L V + G+ V V S+ +
Sbjct: 40 ILPEP---TEGFAADDEPTTPAEL----------VGKFLGY--VSSLVEPSKV---GQFD 81
Query: 126 EEIRDQLYCFED---RGN------------------------------RRVALRPELTPS 152
+ + L FE+ GN R +A RP S
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 153 LARLV--IQKGKSVSLPLKWFAV--GQ-----CWR-----YERMTRGRRREHYQWNMDII 198
+ L + +G + + A+ GQ + Y+ Y
Sbjct: 142 NSALFRAVGEGNA-----QLVAIFGGQGNTDDYFEELRDLYQ---------TYH------ 181
Query: 199 GVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIII 258
V +LI S + L E++R E +F + I+
Sbjct: 182 --VLV---GDLIKF--------------------SAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 259 DKIEK----------------LPLDVI------KNDLKSAGMSEAAIEELLRVLSIKSLT 296
+ +E PL + K G + + L+ + S
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS-- 274
Query: 297 ELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
+G A + + W F SV + + I
Sbjct: 275 --QGLVTA---VAIAET-----DSWESFFVSVRKAITVLFFIGVRC 310
Score = 38.5 bits (89), Expect = 0.004
Identities = 50/270 (18%), Positives = 87/270 (32%), Gaps = 90/270 (33%)
Query: 74 NPPKGTRDFPPEDMR-LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQL 132
NP T F E + +R N+ + FE + L++E +F ++ E
Sbjct: 1668 NPVNLTIHFGGEKGKRIR----ENYSAMI----FETIVDGKLKTEKIF-KEINEHSTS-- 1716
Query: 133 YCFE-DRG------NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRG 185
Y F ++G + AL A K K + FA G
Sbjct: 1717 YTFRSEKGLLSATQFTQPAL---TLMEKAAFEDLKSKGLIPADATFA------------G 1761
Query: 186 RRREH----YQWNMDIIGVPAVTAEAELIS---SIITFFKR-----------------IG 221
H Y A+ + A+++S + F R G
Sbjct: 1762 ----HSLGEY---------AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 222 ITASDVGFRIS---SRKVLQEVLRCHSIPEHLFGKVCI---------IIDKI--EKLPLD 267
+ A + G R++ S++ LQ V + + V I + + LD
Sbjct: 1809 MIAINPG-RVAASFSQEALQYV--VERVGKRTGWLVEIVNYNVENQQYV--AAGDLRALD 1863
Query: 268 VIKNDLKSAGMSEAAIEELLRVLSIKSLTE 297
+ N L + + I EL + LS++ +
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 41.1 bits (96), Expect = 5e-04
Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 26/186 (13%)
Query: 63 PVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQ---EVSRLF---GFEEVDFPVLES 116
V D + P + ++ + + ++ +D L
Sbjct: 107 AVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVL 166
Query: 117 E---ALFIRKA--GEEIRDQLYCFEDRG--NRRVALRPELTPSLARLVIQKGKSVSLPLK 169
E AL I + + D F+D + ++ LR +T V LP K
Sbjct: 167 EISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFK 226
Query: 170 WFAVGQCWRYERMT-RGRRREHYQWNMDIIGVPAVTAE----AELISSIITFFKRIGITA 224
F++ +C+R E+ + ++ + E + + + G T
Sbjct: 227 LFSIDRCFRREQKEDKSHLMTYHS----ASCA--IAGEGVDINDGKAIAEGLLSQFGFT- 279
Query: 225 SDVGFR 230
+ F
Sbjct: 280 -NFKFI 284
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 40.4 bits (94), Expect = 8e-04
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 20/145 (13%)
Query: 98 QEVSRLFGFEEVDFPVLESE---ALFIRKA--GEEIRDQLYCFEDRG--NRRVALRPELT 150
Q++ + +D L E AL I + + D F+D + ++ LR +T
Sbjct: 148 QKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVPAVTAE--- 206
V LP K F++ +C+R E+ + ++ + E
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHS----ASCA--IAGEGVD 261
Query: 207 -AELISSIITFFKRIGITASDVGFR 230
+ + + G T + F
Sbjct: 262 INDGKAIAEGLLSQFGFT--NFKFI 284
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 38.0 bits (88), Expect = 0.004
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 20/145 (13%)
Query: 98 QEVSRLFGFEEVDFPVLESE---ALFIRKA--GEEIRDQLYCFEDRG--NRRVALRPELT 150
Q++ + +D L E AL I + + D F+D + ++ LR +T
Sbjct: 148 QKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVPAVTAE--- 206
V LP K F++ +C+R E+ + ++ + E
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHS----ASCA--IAGEGVD 261
Query: 207 -AELISSIITFFKRIGITASDVGFR 230
+ + + G T + F
Sbjct: 262 INDGKAIAEGLLSQFGFT--NFKFI 284
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 37.3 bits (86), Expect = 0.006
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 20/145 (13%)
Query: 98 QEVSRLFGFEEVDFPVLESE---ALFIRKA--GEEIRDQLYCFEDRG--NRRVALRPELT 150
Q++ + +D L E AL I + + D F+D + ++ LR +T
Sbjct: 148 QKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVPAVTAE--- 206
V LP K F++ +C+R E+ + ++ + E
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHS----ASCA--IAGEGVD 261
Query: 207 -AELISSIITFFKRIGITASDVGFR 230
+ + + G T + F
Sbjct: 262 INDGKAIAEGLLSQFGFT--NFKFI 284
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 34.1 bits (78), Expect = 0.069
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLE---SEALFIRK--AGEEIRDQLYC 134
+ E + R QE+ + E+D L +E L + A + + +
Sbjct: 111 KIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFPE 170
Query: 135 FEDRG--NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE 180
F++ + + LR +T + + LP+K F++ +C+R E
Sbjct: 171 FKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRRE 218
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 32.5 bits (74), Expect = 0.19
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 122 RKAGEEIRDQLYCFEDRGNRRVALRPELTPSLAR-LVIQKGKSVSLPLKWFAVGQCWRYE 180
+ G + Y ++ R+ LR T + AR L K P+K+F++ + +R E
Sbjct: 301 SQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNE 360
Query: 181 RMTRGRRREHYQWNMDIIGVPAVTAE----AELISSIITFFKRIGITASDVGFR 230
+ E +Q I GV V L+ + FF ++GIT + F+
Sbjct: 361 TLDATHLAEFHQ----IEGV--VADHGLTLGHLMGVLREFFTKLGIT--QLRFK 406
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 32.6 bits (74), Expect = 0.21
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 20/146 (13%)
Query: 97 FQEVSRLFGFEEVDFPVLE---SEALFIRKA--GEEIRDQLYCFEDRG--NRRVALRPEL 149
+EV L+ +D L ++AL + + + F+D + + LR +
Sbjct: 140 LREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHM 199
Query: 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVPAVTAE-- 206
T + K LPLK F++ +C+R E+ R ++ V V E
Sbjct: 200 TSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHS----ASCV--VVGEDV 253
Query: 207 --AELISSIITFFKRIGITASDVGFR 230
+ + G T F+
Sbjct: 254 SVDDGKVVAEGLLAQFGFT--KFKFK 277
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.1
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 16/40 (40%)
Query: 115 ESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLA 154
E +A ++K + +LY + P+LA
Sbjct: 18 EKQA--LKKL--QASLKLYA------------DDSAPALA 41
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 30.0 bits (67), Expect = 1.3
Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 37/172 (21%)
Query: 93 LFHNFQEVSRLFGFEEVDFPVLESEALFIR------------------KAGEEIRDQLYC 134
R G E + FP + S A + EI +
Sbjct: 69 RLAALITSHREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSR 128
Query: 135 FEDRGNRRVALRPE---LTPS----LARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRR 187
F+ G+ +L P L+P+ + + +G L++ C+R E ++
Sbjct: 129 FDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRRE-PSKHLD 187
Query: 188 REHYQWNMD---IIGVP--AVTAEAELISSIITFFKRIGI-----TASDVGF 229
R + M IG P + + +G+ ASD F
Sbjct: 188 RLQ-SFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFF 238
>2kd1_A DNA integration/recombination/invertion protein; protein structure
initiative, structural genomics, unknown function,
PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Length = 118
Score = 28.0 bits (63), Expect = 2.3
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 230 RISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKL-PLDVIK--NDLKSAGMSEAAIEEL 286
I + KVL+ L IP G + K+ KL L + N L+ G+ IE++
Sbjct: 24 GIQTAKVLKGYLNSRIIPS--LGNI-----KLAKLTSLHMQNYVNSLRDEGLKRGTIEKI 76
Query: 287 LRVLS 291
++V+
Sbjct: 77 IKVIR 81
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR,
ILF3, ILF2, template-free nucleotidyltransferase fold;
HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A*
4atb_A*
Length = 364
Score = 29.0 bits (64), Expect = 2.5
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 254 VCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFS 311
+ ++ KI +VI N + + G E IEE+ +V S K T G VADL ++
Sbjct: 48 ILSLVTKIN----NVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILK 101
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 29.0 bits (65), Expect = 2.5
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 28/100 (28%)
Query: 270 KNDLKSAGMSEAAIEELLRVLSIKSLTEL--------------EGEAV---------ADL 306
L+ AGM EA I L+ I++ L G + +
Sbjct: 182 LERLRLAGMPEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241
Query: 307 ---KLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGR 343
+ ++ E + ++ + + R
Sbjct: 242 DPVWVTAAIPES--IAWLVKDASQFTLTVPARPDKTLTIR 279
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural
genomics, PSI-2, protein structure initiative; NMR
{Moorella thermoacetica atcc 39073}
Length = 117
Score = 26.9 bits (60), Expect = 4.2
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 230 RISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKL-PLDVIK--NDLKSAGMSEAAIEEL 286
R S+ + + VLR H IP G + ++KL P D+ + +G+S + +
Sbjct: 26 RQSTWESYETVLRLHVIPT--LGSI-----PLKKLQPADIQRLYASKLESGLSPTRVRYI 78
Query: 287 LRVLS 291
VL
Sbjct: 79 HVVLH 83
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 28.1 bits (63), Expect = 4.5
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 25/86 (29%)
Query: 166 LPLKWFAVGQCWRYER------MTRGR-----------RREHYQWNMDIIGVPAVTAEAE 208
LP K F G+ RYE + R R + + V E
Sbjct: 132 LPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGG--RVIDVVYDV------FE 183
Query: 209 LISSIITFFKRIGITASDVGFRISSR 234
+ ++ ++G+++ R+S
Sbjct: 184 EMKLVLERLFKLGVSSETFKVRLSMS 209
>2de6_A Terminal oxygenase component of carbazole; electron transfer
complex, rieske non-heme iron oxygenase system, terminal
oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2
d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Length = 392
Score = 27.6 bits (61), Expect = 7.0
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 79 TRDFPPEDMRL-RNWLFHNFQEVSRLFGFEEVDFPVLES 116
+ ++ R F + + L GF D E+
Sbjct: 301 GKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREA 339
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 26.5 bits (59), Expect = 8.4
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 67 DLQKIDVNPPKGTRDFPPEDMRLRNW 92
+L+ + PP R+ +D + W
Sbjct: 12 ELEDLQKKPPPYLRNLSSDDANVLVW 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.414
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,648,320
Number of extensions: 355277
Number of successful extensions: 905
Number of sequences better than 10.0: 1
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 46
Length of query: 354
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 259
Effective length of database: 4,049,298
Effective search space: 1048768182
Effective search space used: 1048768182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)