RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018556
(354 letters)
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 133 bits (335), Expect = 6e-37
Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 9/274 (3%)
Query: 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
++ +G D+ P + + + + V +G+ E+ P++E LF R GE +
Sbjct: 1 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 60
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRR 188
++Y FEDR + LRPE T R I+ G + + + +G +R+ER +GR R
Sbjct: 61 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 120
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
+ +Q ++ G+ +AELI +++ +GI+ S + ++
Sbjct: 121 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVA 180
Query: 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKL 308
L +K+++ + + S+ + L + L+ E+
Sbjct: 181 FL----EQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAG 236
Query: 309 LFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
L L E G + + +VRGL YY VFE
Sbjct: 237 LCKLLESAGIAYTVNQ--RLVRGLDYYNRTVFEW 268
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 132 bits (333), Expect = 1e-36
Identities = 65/281 (23%), Positives = 125/281 (44%), Gaps = 12/281 (4%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQL 132
P+GT+D PED + ++ + E+ + ++E+ P+ ES LF R G+ ++ ++
Sbjct: 5 PRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEM 64
Query: 133 YCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL--PLKWFAVGQCWRYERMTRGRRREH 190
Y F+D+G+R + LRPE T ++ R I+ + P+K + G +RYER +GR R+
Sbjct: 65 YTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQF 124
Query: 191 YQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHL 250
Q+ ++ IG + +AE+++ ++ ++ G+ + ++ +
Sbjct: 125 NQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFE 184
Query: 251 FGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLF 310
D +L D ++ + AI+ R+ L E+ A + +
Sbjct: 185 PVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDF-----LNEESKAYYEQVK 239
Query: 311 SLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWG 351
+ + D ++VRGL YYT FE N G
Sbjct: 240 AYLDD--LGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDG 278
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 132 bits (331), Expect = 3e-36
Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 9/272 (3%)
Query: 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQ 131
+GT+D +++R+ + ++V G E+ P+ E +F + G +R +
Sbjct: 4 AVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKE 63
Query: 132 LYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLK-WFAVGQCWRYERMTRGRRREH 190
++ F+DRG R + LRPE T ++ R ++ G V + G +R ER +GR R+
Sbjct: 64 MFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQF 123
Query: 191 YQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHL 250
+Q N + +G +AE + + K +G+ V + +
Sbjct: 124 HQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLS 183
Query: 251 FGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLF 310
+ + D E+L + ++ + +A ++EL + L E + +++
Sbjct: 184 PHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERHL 243
Query: 311 SLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
S + + ++VRGL YY FE
Sbjct: 244 -----ERLSVPYELEPALVRGLDYYVRTAFEV 270
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 130 bits (327), Expect = 3e-36
Identities = 37/254 (14%), Positives = 82/254 (32%), Gaps = 28/254 (11%)
Query: 95 HNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLA 154
+F + GF P LE EE F DR ++R + T ++
Sbjct: 10 FSFYSKATKKGFSPFFVPALEK--------AEEPAGNF--FLDRKGNLFSIREDFTKTVL 59
Query: 155 RLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSII 214
+ +K + +RY YQ ++ + ++ E++ I+
Sbjct: 60 NHRKRYSPD--SQIKVWYADFVYRYSG---SDLVAEYQLGLEKVPRNSLDDSLEVLEIIV 114
Query: 215 TFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLK 274
I V +++L+ H +++ I+ L I+
Sbjct: 115 ESASEFFEGPVI--VEIGHTGVYEDLLKEIPKDLH-----EKVLNLIDTKNLAEIEFLSH 167
Query: 275 SAGMSEAAIEELLRVLSIKSLTELEG------EAVADLKLLFSLAEKFGYSDWIQFDASV 328
+ + +E+++ + E DL S ++ + ++ D ++
Sbjct: 168 MKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEKFPTVSVEIDLTL 227
Query: 329 VRGLAYYTGIVFEG 342
R + Y G++F
Sbjct: 228 ARTIEEYCGLIFTI 241
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 130 bits (326), Expect = 1e-35
Identities = 98/280 (35%), Positives = 151/280 (53%), Gaps = 12/280 (4%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
++ + +G RDF PEDM + ++F +E + FGF +DFP LE L+ K+GEE+
Sbjct: 1 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELL 60
Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRRE 189
Q Y F D+G R V L PE TPS R+V + PL+W++ + WRYE GR RE
Sbjct: 61 QQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQR-PLRWYSFPKVWRYEEPQAGRYRE 119
Query: 190 HYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEH 249
HYQ+N DI G + A+AE+I+ + R+G+ RI+SRK+++E +
Sbjct: 120 HYQFNADIFGSDSPEADAEVIALASSILDRLGLQ-DIYEIRINSRKIMEE--IIGGMTSS 176
Query: 250 LFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLS-------IKSLTELEGEA 302
V IID+ K+ + + L+SAG+ E + + + S + +T E
Sbjct: 177 DPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSEE 236
Query: 303 VADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
+A + + L +G +++D S+VRGL+YYTGIVFE
Sbjct: 237 IARMAAVEDLLASYGV-KNVRYDFSIVRGLSYYTGIVFEA 275
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 110 bits (275), Expect = 2e-28
Identities = 46/269 (17%), Positives = 100/269 (37%), Gaps = 5/269 (1%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQL 132
P+ + + ++ + +++ L ++EV P E L+ ++++
Sbjct: 4 PEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKM 63
Query: 133 YCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQ 192
+ F + + LR + T L RL Q S ++ G+ +R E+ +GR E+YQ
Sbjct: 64 FQFIKHEGQSITLRYDFTLPLVRLYSQIKDST--SARYSYFGKIFRKEKRHKGRSTENYQ 121
Query: 193 WNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFG 252
+++ G A +E E++S + +++G+ + + L S
Sbjct: 122 IGIELFGESADKSELEILSLALQVIEQLGLNKTVFEIGSAKFFQRLCQLADGSTELLTEL 181
Query: 253 KVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSL 312
+ + + + + E I L L + ++ L
Sbjct: 182 LLKKDLSGLNAFIEKNNFSKELRGLLKEIFITNELSRLENLVTNTKDDVLISSFDQLKEF 241
Query: 313 AEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
+EK I D +V + YYT ++F+
Sbjct: 242 SEKLSMIKPIIIDLGMVPKMDYYTDLMFK 270
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 46.0 bits (108), Expect = 3e-06
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 71 IDVNPP-KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG---- 125
DV P KG + P ++R + F + + G +E FP+L E L ++A
Sbjct: 18 YDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKG 77
Query: 126 --EEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERM 182
+E+ + + + + ++ALRP + ++ K LP+K + + +RYE
Sbjct: 78 FEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK 137
Query: 183 TRG---RRREHYQWNMDIIGVP 201
R RE +
Sbjct: 138 HTRPLIRLREIMTFKEAHTAHS 159
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 36.4 bits (83), Expect = 0.003
Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 9/148 (6%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKA----- 124
D P +GT P + + + + G + FP+ + ++A
Sbjct: 23 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEG 82
Query: 125 -GEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERM 182
E+ + + +A+RP + + + +S LP G R+E
Sbjct: 83 FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR 142
Query: 183 --TRGRRREHYQWNMDIIGVPAVTAEAE 208
R E AE E
Sbjct: 143 TRPFLRTSEFLWQEGHTAHATREEAEEE 170
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 35.8 bits (82), Expect = 0.005
Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 9/159 (5%)
Query: 84 PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRV 143
+ + L + + + ++EV P + L+ + + NR
Sbjct: 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREY 86
Query: 144 ALRPELTPSLARLVIQKGKSVS-LPLKWFAVGQCWRYERMTRG----RRREHYQWNMDII 198
++P P ++ Q KS LPL+ G C R E R R Q + I
Sbjct: 87 CIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF 146
Query: 199 GVPAVTAEA--ELISSIITFFKRIGITASDVGFRISSRK 235
+ I + + G + ++S+R
Sbjct: 147 CTEEQIRDEVNGCIRLVYDMYSTFGFE--KIVVKLSTRP 183
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 33.6 bits (76), Expect = 0.028
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 146
+RLR+ + + GF +V+ P L + E RD L + AL
Sbjct: 40 LRLRHRVIKAIWDFLDREGFVQVETPFL------TKSTPEGARDFLVPYRHEPGLFYALP 93
Query: 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201
L+ V+ ++F + +C+R E + R+ + Q ++++ V
Sbjct: 94 QSPQLFKQMLM------VAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVE 142
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 31.3 bits (70), Expect = 0.16
Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 146
++ R + + GF +++ P+L + E RD L + AL
Sbjct: 32 LKTRAKITSLVRRFMDDHGFLDIETPML------TKATPEGARDYLVPSRVHKGKFYALP 85
Query: 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200
L++ S +++ + +C+R E + R+ E Q +++ +
Sbjct: 86 QSPQLFKQLLMM------SGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFM 133
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 84
Score = 28.5 bits (64), Expect = 0.25
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 21 SLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDL 68
L ++ T P+ Y P +L AL A NQ R +L+ V L
Sbjct: 17 CLIEKQATNPETY---PLTLNALVIACNQKTSRDPVMNLTQGQVGQSL 61
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 30.0 bits (67), Expect = 0.41
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 24/116 (20%)
Query: 98 QEVSRLF---GFEEVDFPVLESE-----ALFIRK--AGEEIRDQLYCFEDRG-------- 139
+E+ +F G++ V+ P +ESE AL I + ++ D + +
Sbjct: 24 RELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGE 83
Query: 140 --NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQW 193
R+ LR +P R ++ P + G+ +R+E+ +Q
Sbjct: 84 EVEGRLLLRTHTSPMQVRYMVAHTP----PFRIVVPGRVFRFEQTDATHEAVFHQL 135
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 29.7 bits (66), Expect = 0.45
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 135 FEDRGNRRVALRPELTPS--LARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQ 192
E+ LR L + + LP +G C+ + +
Sbjct: 105 LENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTR 164
>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3,
Nqo3 {Thermus thermophilus [TaxId: 274]}
Length = 439
Score = 26.9 bits (58), Expect = 3.7
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 288 RVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASV-----VRGLAYYTGIVFE 341
RVL + GEA L++L LAE G + R + G +
Sbjct: 374 RVLPLSPAPIENGEAEGALQVLALLAEALGVRPPFRLHLEAQKALKARKVPEAMGRLSF 432
>d1ji6a1 b.18.1.3 (A:503-652) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis, CRY3bb1 [TaxId: 1428]}
Length = 150
Score = 26.4 bits (58), Expect = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 256 IIIDKIEKLPLDV 268
I IDKIE +P+ +
Sbjct: 138 IYIDKIEFIPVQL 150
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 26.3 bits (57), Expect = 3.9
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 67 DLQKIDVNPPKGTRDFPPEDMRLRNW 92
+L+ + PP R+ +D + W
Sbjct: 8 ELEDLQKKPPPYLRNLSSDDANVLVW 33
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 26.9 bits (58), Expect = 4.8
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 300 GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGI-VFEGRKVESNLWGW 352
GEA +DL L +++F + + ++ Y G +FE ++ +
Sbjct: 516 GEARSDLWQLMEFSKRFTTDE--VWPEEILSAAPAYRGKTLFEVLFANGSVDRF 567
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 25.8 bits (56), Expect = 5.3
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 67 DLQKIDVNPPKGTRDFPPEDMRLRNW 92
L +++ NP +G +D L W
Sbjct: 7 QLAELNKNPVEGFSAGLIDDNDLYRW 32
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 25.5 bits (55), Expect = 6.1
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 67 DLQKIDVNPPKGTRDFPPEDMRLRNW 92
+L++I K R+ ++ L W
Sbjct: 7 ELEEIRKCGMKNFRNIQVDEANLLTW 32
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 26.4 bits (57), Expect = 6.5
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 14/110 (12%)
Query: 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 146
++R+ +F ++ GF E+ P + I A E + + +A
Sbjct: 34 FKIRSSVFKAVRDFFHENGFIEIHTPKI------IATATEGGTELFPMKYFEEDAFLAES 87
Query: 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMD 196
P+L +++ G + + + +R E R
Sbjct: 88 PQL---YKEIMMASGLD-----RVYEIAPIFRAEEHNTTRHLNEAWSIDS 129
>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale
cress(Arabidopsis thaliana) [TaxId: 3702]}
Length = 278
Score = 26.0 bits (56), Expect = 6.8
Identities = 22/192 (11%), Positives = 58/192 (30%), Gaps = 25/192 (13%)
Query: 120 FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRY 179
F+ + G + +D + +++L+ + + + +
Sbjct: 92 FLDEIGVAYDE-----QDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDL------ 140
Query: 180 ERMTRGRRREHYQWNMDIIGVPAVTAEAELISSI-----ITFFKRIGITASDVGFRISSR 234
+ +G R N ++ T + + ++ G + R+ S
Sbjct: 141 --IVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSI 198
Query: 235 KVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294
++ V ++ + + I+ E +P + GM A I+ R+
Sbjct: 199 GMIDHVPGMKALDMNT-AEDAIVRLTREVVP------GMIVTGMEVAEIDGAPRMGPTFG 251
Query: 295 LTELEGEAVADL 306
+ G+ L
Sbjct: 252 AMMISGQKAGQL 263
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 25.5 bits (55), Expect = 8.6
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 67 DLQKIDVNPPKGTRDFPPEDMRLRNW 92
L + P G +D + W
Sbjct: 8 QLADMRRVPVDGFSAGLVDDNDIYKW 33
>d1ciya1 b.18.1.3 (A:462-609) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Length = 148
Score = 25.2 bits (55), Expect = 9.8
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 256 IIIDKIEKLPLDV 268
+ ID+IE +P +V
Sbjct: 135 VYIDRIEFVPAEV 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.414
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,383,880
Number of extensions: 67454
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 26
Length of query: 354
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 268
Effective length of database: 1,226,816
Effective search space: 328786688
Effective search space used: 328786688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)