BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018557
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FE3|A Chain A, Structure Of Murine Cytosolic 5'-Nucleotidase Iii
Complexed With Uridinine Monophosphate
Length = 297
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 168/288 (58%), Gaps = 24/288 (8%)
Query: 66 DPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQA 125
+P ++ I + G +KLQ+I DF+ TL+R+ NG R + H ++ D R+
Sbjct: 25 NPTRVEEIICGLIKGGAAKLQIITDFNMTLSRFSYNGKRCPTCHNIIDNCKLVTDECRRK 84
Query: 126 LY---EYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRD 182
L E Y+ +E P + +EEK M EW+ K+HGLLIE G+ +K+ V+++ + ++
Sbjct: 85 LLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPKAKLKEIVADSDVMLKE 144
Query: 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK-VHKSFKNVKIVSNRMVFDKDGHLVS 241
G F L++ IPV IFSAG+ D++EEV+RQ V+ S NVK+VSN M FD++G L
Sbjct: 145 GYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHS--NVKVVSNFMDFDENGVLKG 202
Query: 242 FKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNAS-VKNRTNVLLLGDHIGDLGMSD 300
FKG+ IH NK++ AL N D S +K+ +N++LLGD GDL M+D
Sbjct: 203 FKGELIHVFNKHDGAL---------------KNTDYFSQLKDNSNIILLGDSQGDLRMAD 247
Query: 301 GLK-YETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQ 347
G+ E + +G+LND ++ L+ Y +++DIV + + + EVV + Q
Sbjct: 248 GVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKEESL-EVVNSILQ 294
>pdb|2CN1|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii (
Nt5c3)(Casp Target)
pdb|2VKQ|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii (
Cn-Iii, Nt5c3) In Complex With Beryllium Trifluoride
Length = 292
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 157/277 (56%), Gaps = 19/277 (6%)
Query: 66 DPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQA 125
+P ++ I + G +KLQ+I DFD TL+R+ G R + H ++ D R+
Sbjct: 20 NPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKK 79
Query: 126 LY---EYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRD 182
L E Y+ +E P + +EEK M EW+ K+HGLL++ L +K+ V+ + + ++
Sbjct: 80 LLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKE 139
Query: 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSF 242
G F+ L++ IPV IFSAG+ D++EEV+RQ NVK+VSN M FD+ G L F
Sbjct: 140 GYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQ-AGVYHPNVKVVSNFMDFDETGVLKGF 198
Query: 243 KGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGL 302
KG+ IH NK++ AL E+F +K+ +N++LLGD GDL M+DG+
Sbjct: 199 KGELIHVFNKHDGALRNT----EYFN----------QLKDNSNIILLGDSQGDLRMADGV 244
Query: 303 K-YETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPM 338
E + +G+LND ++ L+ Y +++DIV + D +
Sbjct: 245 ANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDESL 281
>pdb|2JGA|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii
In Complex With Phosphate And Magnesium
Length = 292
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 157/277 (56%), Gaps = 19/277 (6%)
Query: 66 DPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQA 125
+P ++ I + G +KLQ+I DFD TL+R+ G R + H ++ D R+
Sbjct: 20 NPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRRK 79
Query: 126 LY---EYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRD 182
L E Y+ +E P + +EEK M EW+ K+HGLL++ L +K+ V+ + + ++
Sbjct: 80 LLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKE 139
Query: 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSF 242
G F+ L++ IPV IFSAG+ D++EEV+RQ NVK+VSN M FD+ G L F
Sbjct: 140 GYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQ-AGVYHPNVKVVSNFMDFDETGVLKGF 198
Query: 243 KGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGL 302
KG+ IH NK++ AL E+F +K+ +N++LLGD GDL M+DG+
Sbjct: 199 KGELIHVFNKHDGALRNT----EYFN----------QLKDNSNIILLGDSQGDLRMADGV 244
Query: 303 K-YETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPM 338
E + +G+LND ++ L+ Y +++DIV + D +
Sbjct: 245 ANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDESL 281
>pdb|2BDU|A Chain A, X-Ray Structure Of A Cytosolic 5'-Nucleotidase Iii From
Mus Musculus Mm.158936
pdb|2BDU|B Chain B, X-Ray Structure Of A Cytosolic 5'-Nucleotidase Iii From
Mus Musculus Mm.158936
pdb|2G06|A Chain A, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, With Bound Magnesium(ii)
pdb|2G06|B Chain B, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, With Bound Magnesium(ii)
pdb|2G08|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Product- Transition Complex Analog With Aluminum
Fluoride
pdb|2G08|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Product- Transition Complex Analog With Aluminum
Fluoride
pdb|2G09|A Chain A, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, Product Complex
pdb|2G09|B Chain B, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, Product Complex
pdb|2G0A|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type 1
With Lead(Ii) Bound In Active Site
pdb|2G0A|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type 1
With Lead(Ii) Bound In Active Site
pdb|2Q4T|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Cytosolic 5'-Nucleotidase Iii From Mus Musculus
Mm.158936
pdb|2Q4T|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Cytosolic 5'-Nucleotidase Iii From Mus Musculus
Mm.158936
Length = 297
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 166/287 (57%), Gaps = 22/287 (7%)
Query: 66 DPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQA 125
+P ++ I + G +KLQ+I DFD TL+R+ NG R + H ++ D R+
Sbjct: 25 NPTRVEEIICGLIKGGAAKLQIITDFDXTLSRFSYNGKRCPTCHNIIDNCKLVTDECRRK 84
Query: 126 LY---EYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRD 182
L E Y+ +E P + +EEK EW+ K+HGLLIE G+ +K+ V+++ + ++
Sbjct: 85 LLQLKEQYYAIEVDPVLTVEEKFPYXVEWYTKSHGLLIEQGIPKAKLKEIVADSDVXLKE 144
Query: 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK-VHKSFKNVKIVSNRMVFDKDGHLVS 241
G F L++ IPV IFSAG+ D++EEV+RQ V+ S NVK+VSN FD++G L
Sbjct: 145 GYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHS--NVKVVSNFXDFDENGVLKG 202
Query: 242 FKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDG 301
FKG+ IH NK++ AL ++F + +K+ +N++LLGD GDL +DG
Sbjct: 203 FKGELIHVFNKHDGALKNT----DYF----------SQLKDNSNIILLGDSQGDLRXADG 248
Query: 302 L-KYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQ 347
+ E + +G+LND ++ L+ Y +++DIV + + + EVV + Q
Sbjct: 249 VANVEHILKIGYLNDRVDELLEKYXDSYDIVLVKEESL-EVVNSILQ 294
>pdb|2G07|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Phospho- Enzyme Intermediate Analog With Beryllium
Fluoride
pdb|2G07|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Phospho- Enzyme Intermediate Analog With Beryllium
Fluoride
Length = 297
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 165/287 (57%), Gaps = 22/287 (7%)
Query: 66 DPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQA 125
+P ++ I + G +KLQ+I FD TL+R+ NG R + H ++ D R+
Sbjct: 25 NPTRVEEIICGLIKGGAAKLQIITXFDXTLSRFSYNGKRCPTCHNIIDNCKLVTDECRRK 84
Query: 126 LY---EYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRD 182
L E Y+ +E P + +EEK EW+ K+HGLLIE G+ +K+ V+++ + ++
Sbjct: 85 LLQLKEQYYAIEVDPVLTVEEKFPYXVEWYTKSHGLLIEQGIPKAKLKEIVADSDVXLKE 144
Query: 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK-VHKSFKNVKIVSNRMVFDKDGHLVS 241
G F L++ IPV IFSAG+ D++EEV+RQ V+ S NVK+VSN FD++G L
Sbjct: 145 GYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHS--NVKVVSNFXDFDENGVLKG 202
Query: 242 FKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDG 301
FKG+ IH NK++ AL ++F + +K+ +N++LLGD GDL +DG
Sbjct: 203 FKGELIHVFNKHDGALKNT----DYF----------SQLKDNSNIILLGDSQGDLRXADG 248
Query: 302 LK-YETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQ 347
+ E + +G+LND ++ L+ Y +++DIV + + + EVV + Q
Sbjct: 249 VANVEHILKIGYLNDRVDELLEKYXDSYDIVLVKEESL-EVVNSILQ 294
>pdb|1L8L|A Chain A, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8L|B Chain B, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|A Chain A, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|B Chain B, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
Length = 225
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSF 242
G+ +L L+ER++ V + S G I+E V K++ NV +NR+ F +G F
Sbjct: 90 GIRELVSRLQERNVQVFLISGGFRSIVEHVA-SKLNIPATNV--FANRLKFYFNGEYAGF 146
Query: 243 -----------KGKTIHSLNKNEH 255
KGK I L + H
Sbjct: 147 DETQPTAESGGKGKVIKFLKEKFH 170
>pdb|2FEA|A Chain A, Crystal Structure Of Mtnx Phosphatase From Bacillus
Subtilis At 2.00 A Resolution
pdb|2FEA|B Chain B, Crystal Structure Of Mtnx Phosphatase From Bacillus
Subtilis At 2.00 A Resolution
Length = 236
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 144 KTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALI---AFRDGVVKLFEFLEERDIPVLI 200
KT ++E G+ GLL ++K+ +++ ++ R+G + F+ E +IP +
Sbjct: 45 KTLSIKEGVGRXFGLLP------SSLKEEITSFVLEDAKIREGFREFVAFINEHEIPFYV 98
Query: 201 FSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKD 236
S G + +L V K +I N FD D
Sbjct: 99 ISGGXDFFVYPLLEGIVEKD----RIYCNHASFDND 130
>pdb|1NNL|A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase
pdb|1NNL|B Chain B, Crystal Structure Of Human Phosphoserine Phosphatase
Length = 225
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSF 242
G+ +L L+ER++ V + S G I+E V K++ NV +NR+ F +G F
Sbjct: 90 GIRELVSRLQERNVQVFLISGGFRSIVEHVA-SKLNIPATNV--FANRLKFYFNGEYAGF 146
Query: 243 -----------KGKTIHSLNKNEH 255
KGK I L + H
Sbjct: 147 DETQPTAESGGKGKVIKLLKEKFH 170
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 289 LGDHIGDLGMSDGLKYETRISVGFLNDNIEN 319
+G + L + G++YE+ +S+G+LN + +N
Sbjct: 444 IGLSVSPLPLGSGMQYESSVSLGYLNQSFQN 474
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,048,754
Number of Sequences: 62578
Number of extensions: 472473
Number of successful extensions: 1155
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 13
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)