Query 018557
Match_columns 354
No_of_seqs 253 out of 951
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01544 HAD-SF-IE haloacid d 100.0 1E-74 2.2E-79 550.6 25.1 272 63-348 1-277 (277)
2 KOG3128 Uncharacterized conser 100.0 3.1E-71 6.7E-76 509.6 14.7 285 53-351 7-297 (298)
3 PF05822 UMPH-1: Pyrimidine 5' 100.0 1.4E-70 3E-75 511.9 16.7 242 93-349 1-246 (246)
4 COG4359 Uncharacterized conser 100.0 5.8E-29 1.3E-33 220.6 12.6 201 83-330 2-207 (220)
5 PF06888 Put_Phosphatase: Puta 99.9 5.1E-27 1.1E-31 219.2 14.6 189 85-310 1-197 (234)
6 TIGR03333 salvage_mtnX 2-hydro 99.9 6.4E-27 1.4E-31 215.0 14.6 211 86-348 1-211 (214)
7 PRK09552 mtnX 2-hydroxy-3-keto 99.9 2.8E-25 6.1E-30 204.6 15.2 214 84-349 3-216 (219)
8 KOG3120 Predicted haloacid deh 99.9 3.3E-23 7.2E-28 188.8 12.0 200 79-316 8-217 (256)
9 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 2.6E-20 5.6E-25 165.2 15.0 187 84-311 1-188 (188)
10 KOG1615 Phosphoserine phosphat 99.8 5.4E-21 1.2E-25 171.4 10.4 204 84-335 16-225 (227)
11 TIGR01488 HAD-SF-IB Haloacid D 99.8 7.4E-20 1.6E-24 161.3 12.4 169 87-300 2-175 (177)
12 PLN02954 phosphoserine phospha 99.8 2.3E-19 5.1E-24 164.6 15.9 184 86-313 14-199 (224)
13 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 1.4E-17 3.1E-22 149.3 14.7 181 86-310 6-188 (201)
14 PRK11133 serB phosphoserine ph 99.7 1.7E-16 3.6E-21 155.3 14.2 222 68-347 81-317 (322)
15 TIGR00338 serB phosphoserine p 99.7 8.2E-16 1.8E-20 140.6 14.9 174 86-308 16-191 (219)
16 COG0560 SerB Phosphoserine pho 99.7 4.5E-16 9.8E-21 143.8 12.9 172 83-300 4-177 (212)
17 PRK13582 thrH phosphoserine ph 99.6 4.1E-15 8.9E-20 134.5 12.3 158 86-300 3-161 (205)
18 TIGR02137 HSK-PSP phosphoserin 99.6 5.7E-15 1.2E-19 135.5 10.7 123 149-301 40-162 (203)
19 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.6 2.6E-14 5.7E-19 128.9 12.2 123 162-307 65-193 (202)
20 PF12710 HAD: haloacid dehalog 99.4 5.9E-13 1.3E-17 118.3 8.9 98 182-300 92-192 (192)
21 TIGR01545 YfhB_g-proteo haloac 99.3 1.6E-11 3.5E-16 113.2 13.9 115 162-300 71-192 (210)
22 PRK11590 hypothetical protein; 99.3 3.1E-11 6.6E-16 110.9 14.1 106 178-309 94-200 (211)
23 PRK13288 pyrophosphatase PpaX; 99.1 9.6E-10 2.1E-14 100.4 10.5 42 177-219 80-121 (214)
24 TIGR03351 PhnX-like phosphonat 99.1 2.3E-09 5E-14 98.0 12.8 42 177-219 85-126 (220)
25 TIGR01449 PGP_bact 2-phosphogl 99.0 2.2E-09 4.8E-14 97.3 10.4 42 177-219 83-124 (213)
26 TIGR01454 AHBA_synth_RP 3-amin 99.0 2.8E-09 6E-14 96.7 10.2 43 176-219 72-114 (205)
27 TIGR02009 PGMB-YQAB-SF beta-ph 99.0 1.7E-09 3.8E-14 95.7 8.5 41 176-219 85-125 (185)
28 PRK13222 phosphoglycolate phos 99.0 1.1E-08 2.4E-13 93.4 13.9 42 177-219 91-132 (226)
29 PRK10826 2-deoxyglucose-6-phos 99.0 5.4E-09 1.2E-13 96.1 11.4 42 177-219 90-131 (222)
30 COG0546 Gph Predicted phosphat 99.0 4.9E-09 1.1E-13 96.9 10.9 41 178-219 88-128 (220)
31 PRK13225 phosphoglycolate phos 98.9 1.4E-08 3E-13 97.4 14.0 42 177-219 140-181 (273)
32 PRK11587 putative phosphatase; 98.9 7.5E-09 1.6E-13 95.1 10.3 41 176-216 80-120 (218)
33 PRK06698 bifunctional 5'-methy 98.9 7.8E-09 1.7E-13 105.7 11.2 43 176-219 327-369 (459)
34 PLN03243 haloacid dehalogenase 98.9 1.1E-08 2.4E-13 97.4 11.2 43 176-219 106-148 (260)
35 cd01427 HAD_like Haloacid deha 98.9 2.9E-09 6.3E-14 87.4 6.1 40 177-216 22-61 (139)
36 PRK13226 phosphoglycolate phos 98.9 1.1E-08 2.5E-13 94.8 10.7 42 177-219 93-134 (229)
37 PRK14988 GMP/IMP nucleotidase; 98.9 1.1E-08 2.5E-13 94.9 10.5 43 176-219 90-132 (224)
38 PLN02770 haloacid dehalogenase 98.9 2.3E-08 5E-13 94.0 12.0 43 176-219 105-147 (248)
39 TIGR01548 HAD-SF-IA-hyp1 haloa 98.8 1.8E-08 3.9E-13 91.0 10.3 40 179-219 106-145 (197)
40 TIGR01990 bPGM beta-phosphoglu 98.8 1.1E-08 2.4E-13 90.6 8.2 39 178-219 86-124 (185)
41 PLN02779 haloacid dehalogenase 98.8 2.1E-08 4.5E-13 96.6 10.7 47 170-216 135-181 (286)
42 TIGR01422 phosphonatase phosph 98.8 5.9E-08 1.3E-12 91.0 12.6 40 177-216 97-136 (253)
43 PRK13478 phosphonoacetaldehyde 98.8 2.2E-07 4.8E-12 88.1 16.5 40 177-216 99-138 (267)
44 TIGR01428 HAD_type_II 2-haloal 98.8 3.9E-08 8.4E-13 88.6 10.6 42 177-219 90-131 (198)
45 PRK13223 phosphoglycolate phos 98.8 3E-08 6.5E-13 94.8 10.0 39 178-216 100-138 (272)
46 TIGR02253 CTE7 HAD superfamily 98.8 6.3E-08 1.4E-12 88.4 11.7 42 177-219 92-133 (221)
47 TIGR02252 DREG-2 REG-2-like, H 98.8 7.4E-08 1.6E-12 87.0 11.5 40 178-219 104-143 (203)
48 PLN02575 haloacid dehalogenase 98.7 7.1E-08 1.5E-12 96.5 11.4 42 177-219 214-255 (381)
49 PLN02177 glycerol-3-phosphate 98.7 2E-07 4.4E-12 96.3 14.0 121 162-312 88-215 (497)
50 PRK09449 dUMP phosphatase; Pro 98.7 1.3E-07 2.8E-12 86.7 10.1 41 177-219 93-133 (224)
51 PRK09456 ?-D-glucose-1-phospha 98.6 6.8E-08 1.5E-12 87.5 7.6 52 164-215 69-120 (199)
52 TIGR02254 YjjG/YfnB HAD superf 98.6 9.3E-08 2E-12 87.1 8.4 41 177-219 95-135 (224)
53 PF13419 HAD_2: Haloacid dehal 98.6 1.6E-07 3.5E-12 80.8 8.9 43 176-219 74-116 (176)
54 PLN02940 riboflavin kinase 98.6 3.5E-07 7.6E-12 91.7 11.5 42 177-218 91-132 (382)
55 PRK10725 fructose-1-P/6-phosph 98.6 2.8E-07 6.1E-12 82.0 9.4 40 177-219 86-125 (188)
56 TIGR01549 HAD-SF-IA-v1 haloaci 98.6 1.6E-07 3.5E-12 81.0 7.5 40 177-216 62-101 (154)
57 TIGR01672 AphA HAD superfamily 98.6 4.4E-07 9.5E-12 85.5 10.8 41 178-219 113-157 (237)
58 PRK10563 6-phosphogluconate ph 98.5 6.4E-07 1.4E-11 82.0 10.0 37 177-216 86-122 (221)
59 TIGR01993 Pyr-5-nucltdase pyri 98.5 1.2E-06 2.7E-11 78.0 10.8 54 162-219 63-120 (184)
60 TIGR01509 HAD-SF-IA-v3 haloaci 98.5 1E-06 2.3E-11 77.3 10.0 40 178-219 84-123 (183)
61 PLN02919 haloacid dehalogenase 98.3 2E-06 4.4E-11 96.4 10.1 40 179-219 161-200 (1057)
62 TIGR02247 HAD-1A3-hyp Epoxide 98.3 3.3E-06 7.1E-11 76.8 9.2 31 176-206 91-121 (211)
63 PRK08238 hypothetical protein; 98.3 1.9E-06 4.1E-11 88.9 7.4 96 177-311 70-165 (479)
64 COG0637 Predicted phosphatase/ 98.3 1.3E-05 2.7E-10 74.5 12.2 43 176-219 83-125 (221)
65 PRK10748 flavin mononucleotide 98.2 8E-06 1.7E-10 76.3 10.0 51 156-207 81-140 (238)
66 TIGR01493 HAD-SF-IA-v2 Haloaci 98.2 1.7E-06 3.7E-11 76.1 5.0 35 177-219 88-122 (175)
67 PLN02811 hydrolase 98.1 1.5E-05 3.2E-10 73.4 9.2 35 177-211 76-110 (220)
68 PRK11009 aphA acid phosphatase 98.0 3.6E-05 7.8E-10 72.6 10.2 41 178-219 113-157 (237)
69 TIGR01511 ATPase-IB1_Cu copper 97.9 2.1E-05 4.5E-10 82.8 7.6 108 178-337 404-511 (562)
70 PHA02597 30.2 hypothetical pro 97.9 5E-05 1.1E-09 68.4 8.9 38 177-215 72-109 (197)
71 TIGR01512 ATPase-IB2_Cd heavy 97.9 1.7E-05 3.7E-10 82.9 6.0 114 178-341 361-475 (536)
72 PF00702 Hydrolase: haloacid d 97.9 9.6E-06 2.1E-10 72.8 3.3 87 178-300 126-212 (215)
73 TIGR01691 enolase-ppase 2,3-di 97.8 0.00017 3.7E-09 67.2 9.8 40 177-216 93-132 (220)
74 PLN02499 glycerol-3-phosphate 97.7 0.00019 4.1E-09 73.9 10.1 139 80-243 4-152 (498)
75 COG2217 ZntA Cation transport 97.7 6.2E-05 1.3E-09 81.0 6.4 116 178-344 536-651 (713)
76 TIGR01525 ATPase-IB_hvy heavy 97.7 8.2E-05 1.8E-09 78.1 6.8 114 178-342 383-497 (556)
77 COG4030 Uncharacterized protei 97.7 5.6E-05 1.2E-09 70.5 4.8 125 87-234 3-134 (315)
78 TIGR01497 kdpB K+-transporting 97.6 9.1E-05 2E-09 79.4 7.0 114 179-343 446-559 (675)
79 PRK01122 potassium-transportin 97.6 0.00014 3E-09 78.1 7.1 115 179-344 445-559 (679)
80 TIGR01522 ATPase-IIA2_Ca golgi 97.5 0.00015 3.2E-09 80.2 7.2 141 179-343 528-669 (884)
81 TIGR01533 lipo_e_P4 5'-nucleot 97.5 0.00052 1.1E-08 65.8 9.7 48 171-219 110-160 (266)
82 smart00577 CPDc catalytic doma 97.5 0.00019 4.1E-09 62.4 6.1 39 177-216 43-81 (148)
83 KOG2914 Predicted haloacid-hal 97.5 0.00093 2E-08 62.5 10.8 40 177-216 90-129 (222)
84 TIGR01524 ATPase-IIIB_Mg magne 97.5 0.0003 6.4E-09 77.8 8.5 140 178-345 514-655 (867)
85 PRK15122 magnesium-transportin 97.5 0.00021 4.6E-09 79.2 6.9 134 178-344 549-689 (903)
86 PRK14010 potassium-transportin 97.5 0.0002 4.3E-09 76.8 6.5 116 178-344 440-555 (673)
87 PRK11033 zntA zinc/cadmium/mer 97.5 0.00026 5.7E-09 76.9 7.4 111 178-341 567-677 (741)
88 PRK10517 magnesium-transportin 97.5 0.0003 6.5E-09 78.0 8.0 141 178-345 549-690 (902)
89 TIGR01647 ATPase-IIIA_H plasma 97.4 0.00029 6.4E-09 76.7 7.7 138 178-344 441-586 (755)
90 PRK10671 copA copper exporting 97.4 0.00023 4.9E-09 78.3 6.8 116 178-344 649-764 (834)
91 TIGR02251 HIF-SF_euk Dullard-l 97.3 0.00082 1.8E-08 59.5 8.1 39 177-216 40-78 (162)
92 COG0474 MgtA Cation transport 97.3 0.00025 5.4E-09 78.8 5.4 145 178-345 546-692 (917)
93 TIGR01517 ATPase-IIB_Ca plasma 97.2 0.00084 1.8E-08 74.8 8.0 143 178-344 578-721 (941)
94 PRK10530 pyridoxal phosphate ( 97.2 0.00084 1.8E-08 63.1 6.9 29 282-312 214-242 (272)
95 TIGR01116 ATPase-IIA1_Ca sarco 97.2 0.00038 8.1E-09 77.4 5.1 142 178-342 536-679 (917)
96 PRK05446 imidazole glycerol-ph 97.2 0.00058 1.3E-08 68.0 5.7 37 178-214 29-69 (354)
97 TIGR01685 MDP-1 magnesium-depe 97.1 0.00043 9.2E-09 62.4 3.9 40 177-216 43-83 (174)
98 TIGR01662 HAD-SF-IIIA HAD-supe 97.1 0.00071 1.5E-08 56.9 5.0 40 179-219 25-72 (132)
99 TIGR01261 hisB_Nterm histidino 97.1 0.00057 1.2E-08 60.6 4.6 41 178-219 28-83 (161)
100 TIGR00213 GmhB_yaeD D,D-heptos 97.1 0.00084 1.8E-08 59.8 5.0 29 178-206 25-53 (176)
101 TIGR01656 Histidinol-ppas hist 97.0 0.00046 1E-08 59.7 2.6 28 179-206 27-54 (147)
102 TIGR01670 YrbI-phosphatas 3-de 97.0 0.0021 4.6E-08 56.2 6.8 32 187-219 36-67 (154)
103 PRK08942 D,D-heptose 1,7-bisph 96.9 0.0027 5.9E-08 56.6 7.2 28 178-205 28-55 (181)
104 smart00775 LNS2 LNS2 domain. T 96.9 0.0042 9E-08 54.9 8.0 36 180-215 28-66 (157)
105 TIGR01523 ATPase-IID_K-Na pota 96.9 0.0022 4.7E-08 72.4 7.6 144 178-342 645-796 (1053)
106 TIGR01106 ATPase-IIC_X-K sodiu 96.8 0.003 6.5E-08 70.9 8.2 146 178-342 567-734 (997)
107 TIGR02726 phenyl_P_delta pheny 96.8 0.0027 5.8E-08 56.9 5.7 114 188-350 43-156 (169)
108 TIGR01482 SPP-subfamily Sucros 96.8 0.0018 4E-08 59.0 4.8 34 283-318 165-198 (225)
109 KOG0207 Cation transport ATPas 96.7 0.0041 8.9E-08 67.7 7.7 115 178-343 722-836 (951)
110 PLN02382 probable sucrose-phos 96.7 0.027 5.9E-07 57.3 13.0 64 282-347 193-258 (413)
111 PRK06769 hypothetical protein; 96.6 0.0011 2.3E-08 59.2 2.2 29 178-206 27-55 (173)
112 COG1011 Predicted hydrolase (H 96.6 0.014 3.1E-07 53.0 9.2 41 177-219 97-137 (229)
113 PRK12702 mannosyl-3-phosphogly 96.5 0.0059 1.3E-07 59.4 6.9 26 283-308 226-251 (302)
114 TIGR01494 ATPase_P-type ATPase 96.5 0.0047 1E-07 63.9 6.4 106 178-342 346-451 (499)
115 TIGR01485 SPP_plant-cyano sucr 96.4 0.0094 2E-07 55.8 7.4 35 282-318 182-217 (249)
116 TIGR01664 DNA-3'-Pase DNA 3'-p 96.4 0.0031 6.7E-08 56.1 3.7 39 180-219 43-93 (166)
117 PRK09484 3-deoxy-D-manno-octul 96.3 0.0073 1.6E-07 54.3 5.8 114 187-349 56-169 (183)
118 TIGR01668 YqeG_hyp_ppase HAD s 96.2 0.0082 1.8E-07 53.3 5.4 39 178-216 42-81 (170)
119 COG0561 Cof Predicted hydrolas 95.9 0.066 1.4E-06 50.3 10.3 57 283-349 205-261 (264)
120 KOG0202 Ca2+ transporting ATPa 95.7 0.015 3.3E-07 63.0 5.5 143 178-342 583-728 (972)
121 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.7 0.047 1E-06 51.0 8.2 42 177-219 22-65 (242)
122 TIGR01684 viral_ppase viral ph 95.5 0.029 6.3E-07 54.6 6.2 41 178-219 144-185 (301)
123 KOG0204 Calcium transporting A 95.4 0.06 1.3E-06 58.7 8.7 136 178-344 646-791 (1034)
124 PF06941 NT5C: 5' nucleotidase 95.4 0.083 1.8E-06 47.6 8.6 42 177-218 71-119 (191)
125 PHA03398 viral phosphatase sup 95.1 0.043 9.3E-07 53.5 6.1 56 177-233 145-201 (303)
126 PRK14502 bifunctional mannosyl 94.9 0.06 1.3E-06 57.9 7.1 42 57-98 387-430 (694)
127 TIGR02250 FCP1_euk FCP1-like p 94.9 0.056 1.2E-06 47.7 5.8 52 177-233 56-107 (156)
128 TIGR01657 P-ATPase-V P-type AT 94.7 0.023 5E-07 64.3 3.3 42 178-220 655-696 (1054)
129 PF11019 DUF2608: Protein of u 94.6 0.41 9E-06 45.5 11.1 189 75-322 11-218 (252)
130 COG4087 Soluble P-type ATPase 94.2 0.054 1.2E-06 46.8 3.6 93 177-312 28-121 (152)
131 TIGR01681 HAD-SF-IIIC HAD-supe 94.1 0.06 1.3E-06 45.6 3.8 38 179-216 29-67 (128)
132 PHA02530 pseT polynucleotide k 93.8 0.051 1.1E-06 52.1 3.2 40 177-216 185-224 (300)
133 TIGR01675 plant-AP plant acid 93.8 0.74 1.6E-05 43.4 10.8 49 169-218 110-161 (229)
134 COG3769 Predicted hydrolase (H 93.3 1.1 2.3E-05 42.2 10.7 41 274-316 200-240 (274)
135 TIGR01652 ATPase-Plipid phosph 93.2 0.14 3E-06 58.1 5.9 41 178-219 630-670 (1057)
136 PF03767 Acid_phosphat_B: HAD 93.0 0.32 6.9E-06 45.6 7.0 47 172-219 108-157 (229)
137 TIGR01686 FkbH FkbH-like domai 92.9 0.091 2E-06 51.4 3.5 36 180-215 32-67 (320)
138 PLN03190 aminophospholipid tra 92.3 0.079 1.7E-06 60.6 2.4 39 178-216 725-763 (1178)
139 TIGR02244 HAD-IG-Ncltidse HAD 92.0 0.59 1.3E-05 46.6 7.8 41 178-218 183-223 (343)
140 KOG3109 Haloacid dehalogenase- 91.7 3.8 8.2E-05 38.6 12.2 118 79-219 10-137 (244)
141 TIGR01663 PNK-3'Pase polynucle 91.7 0.25 5.4E-06 51.9 5.1 39 180-219 198-248 (526)
142 PF03031 NIF: NLI interacting 91.7 0.14 3.1E-06 44.3 2.8 39 177-216 34-72 (159)
143 PLN02151 trehalose-phosphatase 91.4 0.69 1.5E-05 46.3 7.7 33 65-98 79-112 (354)
144 KOG0206 P-type ATPase [General 90.8 0.68 1.5E-05 52.7 7.7 39 178-216 650-688 (1151)
145 PRK10187 trehalose-6-phosphate 90.7 0.5 1.1E-05 45.1 5.8 29 283-311 190-220 (266)
146 PF08235 LNS2: LNS2 (Lipin/Ned 90.6 0.35 7.6E-06 42.9 4.2 38 179-216 27-67 (157)
147 PF13344 Hydrolase_6: Haloacid 90.5 0.56 1.2E-05 38.2 5.1 41 178-219 13-56 (101)
148 COG0241 HisB Histidinol phosph 90.3 0.58 1.2E-05 42.6 5.4 26 178-203 30-55 (181)
149 TIGR02245 HAD_IIID1 HAD-superf 89.7 0.5 1.1E-05 43.4 4.6 38 178-216 44-81 (195)
150 KOG3128 Uncharacterized conser 88.7 1.2 2.7E-05 42.6 6.5 81 218-301 209-291 (298)
151 KOG3085 Predicted hydrolase (H 87.0 5.5 0.00012 37.8 9.8 39 177-216 111-149 (237)
152 COG4229 Predicted enolase-phos 86.8 4 8.7E-05 37.4 8.3 64 138-206 60-130 (229)
153 PRK10976 putative hydrolase; P 86.6 0.72 1.6E-05 43.2 3.7 36 282-319 205-240 (266)
154 PRK01158 phosphoglycolate phos 84.7 0.52 1.1E-05 43.0 1.7 36 282-319 172-207 (230)
155 PF08282 Hydrolase_3: haloacid 84.3 0.57 1.2E-05 42.3 1.8 35 282-318 201-235 (254)
156 PRK10513 sugar phosphate phosp 84.0 0.59 1.3E-05 43.8 1.8 36 282-319 211-246 (270)
157 PLN02580 trehalose-phosphatase 83.2 1.8 3.8E-05 43.9 4.9 26 73-98 107-133 (384)
158 COG5663 Uncharacterized conser 82.7 2.3 4.9E-05 38.4 4.8 39 178-216 71-111 (194)
159 PF12689 Acid_PPase: Acid Phos 81.6 2.5 5.5E-05 37.9 4.8 40 177-216 43-83 (169)
160 PRK00192 mannosyl-3-phosphogly 81.2 1.8 3.9E-05 41.0 4.0 65 282-350 205-271 (273)
161 TIGR01456 CECR5 HAD-superfamil 81.0 6.6 0.00014 38.4 7.9 19 284-302 264-283 (321)
162 KOG0203 Na+/K+ ATPase, alpha s 80.8 2.4 5.2E-05 46.7 5.0 49 283-339 705-753 (1019)
163 COG2216 KdpB High-affinity K+ 80.3 2.1 4.5E-05 44.9 4.2 40 179-219 447-486 (681)
164 TIGR02463 MPGP_rel mannosyl-3- 80.0 0.94 2E-05 41.2 1.5 19 282-300 194-212 (221)
165 PRK15126 thiamin pyrimidine py 78.9 1.7 3.7E-05 40.9 3.0 61 282-350 203-263 (272)
166 PRK03669 mannosyl-3-phosphogly 78.6 1.1 2.4E-05 42.5 1.5 31 282-314 205-235 (271)
167 TIGR01486 HAD-SF-IIB-MPGP mann 78.5 2.6 5.5E-05 39.5 4.0 62 283-348 194-255 (256)
168 TIGR01487 SPP-like sucrose-pho 78.3 1 2.2E-05 40.9 1.2 34 283-318 163-196 (215)
169 TIGR02471 sucr_syn_bact_C sucr 78.3 1.5 3.2E-05 40.5 2.3 34 283-318 175-208 (236)
170 KOG0210 P-type ATPase [Inorgan 77.5 3.1 6.8E-05 45.1 4.6 59 136-206 623-685 (1051)
171 PTZ00445 p36-lilke protein; Pr 77.5 4.7 0.0001 37.7 5.3 59 68-128 29-89 (219)
172 PLN02205 alpha,alpha-trehalose 77.0 8 0.00017 43.2 7.8 31 184-214 621-652 (854)
173 PLN03017 trehalose-phosphatase 77.0 2.7 5.8E-05 42.3 3.8 32 66-98 93-125 (366)
174 TIGR00685 T6PP trehalose-phosp 76.9 1.4 3.1E-05 41.1 1.8 19 283-301 183-201 (244)
175 KOG2116 Protein involved in pl 76.7 2.1 4.7E-05 45.7 3.1 32 183-214 562-596 (738)
176 TIGR01689 EcbF-BcbF capsule bi 76.1 3.8 8.3E-05 35.0 4.0 12 86-97 3-14 (126)
177 PLN02887 hydrolase family prot 75.4 16 0.00034 39.1 9.2 38 179-216 325-362 (580)
178 PLN02645 phosphoglycolate phos 74.6 6.6 0.00014 38.2 5.8 50 179-229 44-96 (311)
179 PRK14501 putative bifunctional 74.3 7.2 0.00016 42.6 6.6 30 282-311 670-700 (726)
180 TIGR02461 osmo_MPG_phos mannos 74.0 1.6 3.4E-05 40.6 1.2 20 282-301 198-217 (225)
181 COG1877 OtsB Trehalose-6-phosp 71.5 3.8 8.3E-05 39.4 3.2 30 284-313 199-230 (266)
182 PRK10444 UMP phosphatase; Prov 71.0 5.4 0.00012 37.7 4.1 36 179-214 17-52 (248)
183 TIGR01458 HAD-SF-IIA-hyp3 HAD- 70.9 5.2 0.00011 37.8 4.0 39 180-219 22-63 (257)
184 COG0647 NagD Predicted sugar p 70.8 8.1 0.00018 37.3 5.3 42 177-218 22-66 (269)
185 TIGR01452 PGP_euk phosphoglyco 69.8 9.9 0.00021 36.2 5.7 25 180-204 19-43 (279)
186 KOG2826 Actin-related protein 69.6 5.3 0.00011 37.8 3.6 38 67-104 12-52 (301)
187 TIGR02461 osmo_MPG_phos mannos 69.6 10 0.00022 35.1 5.6 36 183-219 19-54 (225)
188 PLN02887 hydrolase family prot 69.5 2.6 5.6E-05 45.0 1.8 36 282-319 522-557 (580)
189 TIGR02463 MPGP_rel mannosyl-3- 68.8 13 0.00027 33.7 6.0 35 184-219 21-55 (221)
190 TIGR00099 Cof-subfamily Cof su 68.4 2.4 5.3E-05 39.5 1.2 27 283-311 204-230 (256)
191 COG2503 Predicted secreted aci 68.1 7 0.00015 37.4 4.1 47 162-208 105-151 (274)
192 COG1778 Low specificity phosph 68.1 3.2 6.9E-05 37.1 1.7 38 179-219 37-74 (170)
193 TIGR01457 HAD-SF-IIA-hyp2 HAD- 67.8 12 0.00027 35.1 5.8 38 181-219 19-59 (249)
194 PF13242 Hydrolase_like: HAD-h 67.8 2.4 5.2E-05 32.1 0.8 23 283-305 21-44 (75)
195 PRK00192 mannosyl-3-phosphogly 67.2 13 0.00028 35.1 5.9 38 181-219 23-60 (273)
196 PRK00927 tryptophanyl-tRNA syn 67.1 16 0.00034 36.2 6.6 136 39-193 182-326 (333)
197 TIGR00099 Cof-subfamily Cof su 67.1 13 0.00029 34.4 5.9 56 180-238 17-73 (256)
198 TIGR01487 SPP-like sucrose-pho 66.4 13 0.00027 33.7 5.5 39 180-219 19-57 (215)
199 COG3700 AphA Acid phosphatase 65.8 11 0.00025 34.4 4.8 26 70-97 51-76 (237)
200 TIGR01680 Veg_Stor_Prot vegeta 65.1 11 0.00023 36.6 4.8 46 171-216 137-185 (275)
201 PRK09484 3-deoxy-D-manno-octul 64.2 3.4 7.3E-05 37.0 1.2 14 84-97 21-34 (183)
202 PF12689 Acid_PPase: Acid Phos 63.8 27 0.00059 31.3 6.9 120 86-215 5-165 (169)
203 PF08645 PNK3P: Polynucleotide 63.5 3.3 7.1E-05 36.5 0.9 13 86-98 2-14 (159)
204 PF05116 S6PP: Sucrose-6F-phos 63.1 4.5 9.7E-05 38.1 1.8 20 282-301 180-199 (247)
205 PF00875 DNA_photolyase: DNA p 61.7 17 0.00036 31.7 5.1 44 183-231 54-97 (165)
206 PF09419 PGP_phosphatase: Mito 59.6 18 0.00039 32.5 5.0 37 59-97 18-54 (168)
207 COG2179 Predicted hydrolase of 59.0 18 0.00038 32.7 4.7 42 177-219 44-85 (175)
208 PRK12556 tryptophanyl-tRNA syn 58.8 68 0.0015 31.8 9.4 42 37-83 191-233 (332)
209 PRK12702 mannosyl-3-phosphogly 58.0 24 0.00051 34.7 5.8 35 184-219 23-57 (302)
210 PRK10513 sugar phosphate phosp 57.9 25 0.00055 32.7 6.0 38 181-219 22-59 (270)
211 PF02358 Trehalose_PPase: Treh 57.6 6.1 0.00013 36.6 1.7 20 283-302 184-203 (235)
212 TIGR01681 HAD-SF-IIIC HAD-supe 57.5 14 0.0003 31.0 3.7 17 283-299 108-124 (128)
213 PF00702 Hydrolase: haloacid d 57.3 6 0.00013 35.0 1.6 13 86-98 3-15 (215)
214 PLN02588 glycerol-3-phosphate 56.6 53 0.0011 34.7 8.4 78 159-243 109-188 (525)
215 TIGR01484 HAD-SF-IIB HAD-super 56.0 3.8 8.3E-05 36.6 0.0 18 283-300 179-196 (204)
216 TIGR01482 SPP-subfamily Sucros 54.8 30 0.00064 31.1 5.7 38 180-218 16-53 (225)
217 PRK01158 phosphoglycolate phos 54.7 31 0.00066 31.2 5.8 39 180-219 21-59 (230)
218 PF09419 PGP_phosphatase: Mito 54.3 15 0.00033 33.0 3.6 15 285-299 138-153 (168)
219 PLN02423 phosphomannomutase 54.0 8.2 0.00018 36.2 1.9 19 282-300 199-221 (245)
220 COG0561 Cof Predicted hydrolas 53.6 32 0.0007 32.0 5.9 41 178-219 19-59 (264)
221 PTZ00445 p36-lilke protein; Pr 53.5 29 0.00063 32.5 5.4 38 179-216 75-127 (219)
222 PRK10187 trehalose-6-phosphate 53.0 7 0.00015 37.2 1.3 15 84-98 14-28 (266)
223 PRK12282 tryptophanyl-tRNA syn 52.3 88 0.0019 31.0 9.0 128 51-193 195-325 (333)
224 PRK10530 pyridoxal phosphate ( 52.2 33 0.00072 31.8 5.8 38 181-219 22-59 (272)
225 TIGR01484 HAD-SF-IIB HAD-super 51.2 24 0.00052 31.4 4.4 36 180-215 18-53 (204)
226 PF05116 S6PP: Sucrose-6F-phos 51.0 6.8 0.00015 36.9 0.9 13 84-96 2-14 (247)
227 PF08282 Hydrolase_3: haloacid 50.7 32 0.00069 30.7 5.2 39 180-219 16-54 (254)
228 TIGR02765 crypto_DASH cryptoch 50.0 31 0.00067 35.0 5.5 43 183-230 62-104 (429)
229 TIGR01486 HAD-SF-IIB-MPGP mann 49.5 41 0.00088 31.3 5.9 35 184-219 21-55 (256)
230 TIGR01656 Histidinol-ppas hist 49.5 10 0.00022 32.4 1.7 20 283-302 118-137 (147)
231 TIGR01689 EcbF-BcbF capsule bi 49.4 35 0.00075 29.1 4.9 49 179-230 24-87 (126)
232 PRK15126 thiamin pyrimidine py 47.9 39 0.00085 31.6 5.5 39 180-219 20-58 (272)
233 TIGR01485 SPP_plant-cyano sucr 46.8 26 0.00057 32.5 4.1 35 182-216 24-58 (249)
234 PRK12285 tryptophanyl-tRNA syn 46.4 65 0.0014 32.5 7.1 72 51-132 250-324 (368)
235 COG5083 SMP2 Uncharacterized p 46.1 10 0.00022 39.1 1.3 13 86-98 377-389 (580)
236 TIGR01460 HAD-SF-IIA Haloacid 45.4 46 0.001 30.8 5.5 41 179-219 14-57 (236)
237 COG0180 TrpS Tryptophanyl-tRNA 45.3 1.2E+02 0.0027 30.0 8.6 114 17-150 160-281 (314)
238 PRK03669 mannosyl-3-phosphogly 45.2 53 0.0011 30.9 6.0 35 184-219 29-63 (271)
239 PRK10976 putative hydrolase; P 45.2 44 0.00095 31.1 5.4 39 180-219 20-58 (266)
240 PLN02486 aminoacyl-tRNA ligase 43.9 1.5E+02 0.0031 30.2 9.1 84 38-134 253-340 (383)
241 TIGR01458 HAD-SF-IIA-hyp3 HAD- 43.6 70 0.0015 30.1 6.5 24 282-305 195-219 (257)
242 COG0068 HypF Hydrogenase matur 42.7 1.3E+02 0.0029 33.0 8.9 111 118-239 619-737 (750)
243 TIGR00233 trpS tryptophanyl-tR 42.6 97 0.0021 30.6 7.6 32 51-82 191-223 (328)
244 TIGR02826 RNR_activ_nrdG3 anae 42.3 86 0.0019 27.3 6.4 35 180-214 73-108 (147)
245 TIGR02726 phenyl_P_delta pheny 41.9 13 0.00029 33.1 1.2 12 86-97 9-20 (169)
246 PLN03063 alpha,alpha-trehalose 41.9 21 0.00046 39.6 3.1 28 69-98 494-521 (797)
247 TIGR00685 T6PP trehalose-phosp 41.7 13 0.00028 34.7 1.2 16 83-98 2-17 (244)
248 PRK14024 phosphoribosyl isomer 41.7 2.4E+02 0.0052 26.3 9.8 66 62-150 29-95 (241)
249 PF05761 5_nucleotid: 5' nucle 41.2 47 0.001 34.4 5.3 42 178-219 182-223 (448)
250 PLN03064 alpha,alpha-trehalose 41.2 24 0.00052 39.9 3.4 29 69-99 578-606 (934)
251 TIGR01670 YrbI-phosphatas 3-de 41.1 14 0.0003 32.0 1.2 58 283-349 92-149 (154)
252 PRK02301 putative deoxyhypusin 40.9 1.7E+02 0.0037 29.0 8.9 115 67-200 70-190 (316)
253 PTZ00174 phosphomannomutase; P 40.6 25 0.00054 32.8 3.0 18 283-300 200-221 (247)
254 TIGR01662 HAD-SF-IIIA HAD-supe 39.8 16 0.00034 30.2 1.3 20 283-302 103-123 (132)
255 PRK12283 tryptophanyl-tRNA syn 38.7 2.1E+02 0.0046 29.3 9.3 132 38-193 254-392 (398)
256 PF14213 DUF4325: Domain of un 38.6 41 0.00089 25.5 3.4 28 66-96 2-29 (74)
257 TIGR00591 phr2 photolyase PhrI 37.4 59 0.0013 33.3 5.3 40 186-230 82-121 (454)
258 PHA02570 dexA exonuclease; Pro 37.1 43 0.00094 31.4 3.8 59 148-216 64-130 (220)
259 KOG0323 TFIIF-interacting CTD 37.1 52 0.0011 35.6 4.9 57 177-238 199-256 (635)
260 cd03769 SR_IS607_transposase_l 37.1 88 0.0019 26.5 5.5 37 180-216 47-89 (134)
261 PRK00805 putative deoxyhypusin 37.0 2.1E+02 0.0045 28.6 8.8 116 67-200 59-181 (329)
262 TIGR00321 dhys deoxyhypusine s 37.0 2.6E+02 0.0056 27.6 9.4 116 67-200 58-179 (301)
263 PLN02423 phosphomannomutase 36.8 21 0.00046 33.4 1.8 37 80-129 3-39 (245)
264 cd00806 TrpRS_core catalytic c 36.0 1.2E+02 0.0026 29.2 6.9 35 49-83 188-223 (280)
265 PRK01221 putative deoxyhypusin 35.7 2.5E+02 0.0053 27.8 9.0 115 67-200 67-189 (312)
266 TIGR02109 PQQ_syn_pqqE coenzym 35.4 1.1E+02 0.0024 30.0 6.7 36 177-212 63-101 (358)
267 TIGR03556 photolyase_8HDF deox 35.3 69 0.0015 33.2 5.5 32 185-216 58-89 (471)
268 PRK05428 HPr kinase/phosphoryl 32.8 78 0.0017 31.2 5.1 67 185-259 96-166 (308)
269 COG0620 MetE Methionine syntha 32.7 2.1E+02 0.0045 28.4 8.1 68 154-229 21-93 (330)
270 PRK08942 D,D-heptose 1,7-bisph 32.5 29 0.00063 30.5 1.9 20 283-302 120-139 (181)
271 KOG2470 Similar to IMP-GMP spe 32.3 43 0.00094 33.8 3.2 53 182-234 243-299 (510)
272 PF10776 DUF2600: Protein of u 31.6 1.5E+02 0.0032 29.7 6.7 87 63-157 76-174 (330)
273 PTZ00174 phosphomannomutase; P 31.3 70 0.0015 29.8 4.4 35 180-214 23-57 (247)
274 PLN02886 aminoacyl-tRNA ligase 30.8 1.5E+02 0.0033 30.2 6.9 34 50-83 249-285 (389)
275 COG1899 DYS1 Deoxyhypusine syn 30.4 4.3E+02 0.0094 26.2 9.6 116 67-200 67-189 (318)
276 cd06533 Glyco_transf_WecG_TagA 29.9 1E+02 0.0022 27.3 4.9 44 184-229 35-78 (171)
277 PF08671 SinI: Anti-repressor 29.2 93 0.002 20.0 3.3 25 150-175 4-28 (30)
278 TIGR00213 GmhB_yaeD D,D-heptos 29.0 29 0.00064 30.4 1.3 20 283-302 123-142 (176)
279 PRK10076 pyruvate formate lyas 29.0 1.5E+02 0.0032 27.4 6.0 35 180-214 51-88 (213)
280 PRK03971 putative deoxyhypusin 28.6 2.8E+02 0.0061 27.7 8.2 56 142-200 143-209 (334)
281 COG1880 CdhB CO dehydrogenase/ 28.6 2.9E+02 0.0062 24.9 7.3 45 183-229 87-140 (170)
282 PRK14501 putative bifunctional 28.4 40 0.00088 36.8 2.5 35 180-214 515-550 (726)
283 COG4996 Predicted phosphatase 28.2 89 0.0019 27.4 4.0 42 177-219 39-80 (164)
284 PF07499 RuvA_C: RuvA, C-termi 27.7 1.4E+02 0.003 20.6 4.3 26 150-175 1-26 (47)
285 PHA02540 61 DNA primase; Provi 27.6 6.3E+02 0.014 25.2 11.7 19 229-247 172-193 (337)
286 COG3684 LacD Tagatose-1,6-bisp 27.6 1.3E+02 0.0028 29.3 5.3 144 43-206 85-241 (306)
287 TIGR01456 CECR5 HAD-superfamil 27.5 62 0.0014 31.6 3.4 42 179-221 16-65 (321)
288 PRK10444 UMP phosphatase; Prov 27.2 33 0.00071 32.3 1.4 26 282-307 190-216 (248)
289 PF08645 PNK3P: Polynucleotide 26.7 55 0.0012 28.7 2.6 23 180-202 30-52 (159)
290 PRK13762 tRNA-modifying enzyme 26.7 66 0.0014 31.7 3.4 44 163-206 118-169 (322)
291 PF00578 AhpC-TSA: AhpC/TSA fa 26.4 1.7E+02 0.0036 23.3 5.3 34 183-216 47-80 (124)
292 TIGR01684 viral_ppase viral ph 26.4 67 0.0014 31.6 3.3 12 86-97 128-139 (301)
293 COG2390 DeoR Transcriptional r 26.3 2.5E+02 0.0055 27.8 7.4 64 160-229 23-88 (321)
294 COG2761 FrnE Predicted dithiol 26.3 5.6E+02 0.012 24.2 9.7 121 79-219 81-215 (225)
295 PRK12284 tryptophanyl-tRNA syn 26.1 2.4E+02 0.0051 29.3 7.3 60 17-81 163-231 (431)
296 TIGR03365 Bsubt_queE 7-cyano-7 24.9 68 0.0015 30.0 3.0 29 178-206 83-111 (238)
297 PRK14114 1-(5-phosphoribosyl)- 24.9 2.2E+02 0.0049 26.8 6.5 67 60-148 25-91 (241)
298 PF12000 Glyco_trans_4_3: Gkyc 24.8 1.9E+02 0.0041 26.0 5.7 55 183-243 52-109 (171)
299 PF02061 Lambda_CIII: Lambda P 24.8 68 0.0015 22.2 2.1 28 166-197 18-45 (45)
300 TIGR01302 IMP_dehydrog inosine 24.7 6E+02 0.013 26.1 10.2 147 59-206 152-337 (450)
301 TIGR01303 IMP_DH_rel_1 IMP deh 24.7 7.4E+02 0.016 25.9 10.8 146 59-206 154-338 (475)
302 PF08275 Toprim_N: DNA primase 24.3 34 0.00073 29.0 0.8 76 155-247 14-98 (128)
303 TIGR03707 PPK2_P_aer polyphosp 24.2 2.3E+02 0.0051 26.6 6.5 49 164-216 2-55 (230)
304 PRK05446 imidazole glycerol-ph 24.1 58 0.0013 32.7 2.5 46 85-132 3-48 (354)
305 PRK05667 dnaG DNA primase; Val 24.1 9.1E+02 0.02 25.9 18.1 75 156-247 134-218 (580)
306 cd00128 XPG Xeroderma pigmento 23.9 6.6E+02 0.014 24.2 11.5 45 181-230 127-171 (316)
307 KOG0541 Alkyl hydroperoxide re 23.8 1.7E+02 0.0038 26.2 5.1 48 181-229 64-111 (171)
308 TIGR01391 dnaG DNA primase, ca 23.6 7.9E+02 0.017 25.0 12.2 75 156-247 138-222 (415)
309 KOG2145 Cytoplasmic tryptophan 23.6 6.1E+02 0.013 25.2 9.2 93 46-152 272-367 (397)
310 KOG3189 Phosphomannomutase [Li 23.2 1E+02 0.0022 28.9 3.7 19 80-98 7-25 (252)
311 COG0415 PhrB Deoxyribodipyrimi 22.8 1.5E+02 0.0033 30.9 5.3 46 182-232 55-100 (461)
312 TIGR01457 HAD-SF-IIA-hyp2 HAD- 22.8 46 0.00099 31.2 1.4 26 282-307 194-220 (249)
313 COG5610 Predicted hydrolase (H 22.7 1.7E+02 0.0037 30.8 5.5 107 178-316 96-208 (635)
314 PRK05301 pyrroloquinoline quin 22.6 1.6E+02 0.0035 29.2 5.4 36 176-211 71-109 (378)
315 KOG1605 TFIIF-interacting CTD 22.2 37 0.0008 32.7 0.7 50 178-232 130-179 (262)
316 PLN02645 phosphoglycolate phos 22.2 41 0.00088 32.7 1.0 25 282-306 246-271 (311)
317 TIGR00696 wecB_tagA_cpsF bacte 21.5 1.8E+02 0.0039 26.1 5.0 44 184-229 37-80 (177)
318 KOG0205 Plasma membrane H+-tra 21.4 1.4E+02 0.0029 32.9 4.6 138 179-339 492-631 (942)
319 PF04312 DUF460: Protein of un 21.4 1.7E+02 0.0038 25.5 4.6 61 88-151 47-122 (138)
320 TIGR01452 PGP_euk phosphoglyco 21.2 39 0.00085 32.1 0.6 25 282-306 218-243 (279)
321 PRK10674 deoxyribodipyrimidine 21.2 1.8E+02 0.0039 30.2 5.5 18 312-329 211-228 (472)
322 TIGR03558 oxido_grp_1 lucifera 21.0 1.1E+02 0.0024 29.6 3.8 31 60-90 275-306 (323)
323 TIGR01459 HAD-SF-IIA-hyp4 HAD- 20.7 48 0.001 30.7 1.1 19 283-301 213-232 (242)
324 COG4850 Uncharacterized conser 20.4 2.4E+02 0.0051 28.4 5.8 40 178-218 195-235 (373)
325 COG0731 Fe-S oxidoreductases [ 20.3 1.6E+02 0.0034 29.0 4.6 41 173-216 86-127 (296)
326 cd03017 PRX_BCP Peroxiredoxin 20.3 4.3E+02 0.0094 21.4 6.8 53 183-240 67-123 (140)
327 PRK11145 pflA pyruvate formate 20.2 1.6E+02 0.0035 27.2 4.5 29 178-206 81-110 (246)
328 TIGR02766 crypt_chrom_pln cryp 20.1 1.8E+02 0.004 29.9 5.3 19 312-330 209-227 (475)
No 1
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=100.00 E-value=1e-74 Score=550.64 Aligned_cols=272 Identities=38% Similarity=0.657 Sum_probs=253.2
Q ss_pred EECChhHHHHHHHHHHhcCCCcEEEEEecccccccccc-cCccccchHHHhhccC---hhHHHHHHHHHHhhCCCCCCCC
Q 018557 63 IKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI-NGSRGQSSHGLLQQGN---PEYDAKRQALYEYYHPLEFSPT 138 (354)
Q Consensus 63 ~i~d~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~-~g~~~ds~~~il~~~~---~e~~~~~~~L~~~y~p~E~d~~ 138 (354)
+|+||++|++||++|+++|+++||||+|||+|||+|++ ||+|++|||++|+++. +++++++++||++|||||+||+
T Consensus 1 ~i~d~~~~~~~~~~~~~~g~~~lqvisDFD~Tlt~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~Y~PiE~d~~ 80 (277)
T TIGR01544 1 RMADPTRVEEIICGLVKGGAAKLQIISDFDYTLSRFSYEDGKRCPTCHGIFDNCKLLTDECRKKLLQLKEKYYPIEVDPV 80 (277)
T ss_pred CCCCHHHHHHHHHHHHhcChhheEEeeccCccceeeecCCCCCCcchHhHHhhCCCCCHHHHHHHHHHHhhccceecCCC
Confidence 58999999999999999999999999999999999996 9999999999999986 7999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcC
Q 018557 139 VPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVH 218 (354)
Q Consensus 139 is~~Ek~~~m~ew~~~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g 218 (354)
||.+||+++|+|||+++|+|+++.+++++++.+++++++++++||+.+|+++|+++|+|++|+|||++.+|+.+|++. |
T Consensus 81 ~~~~eK~~~m~eWw~k~~~l~~~~~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l-g 159 (277)
T TIGR01544 81 LTVEEKYPYMVEWWTKSHGLLVQQAFPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA-G 159 (277)
T ss_pred CChHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc-C
Confidence 999999999999999999999999999999999998788999999999999999999999999999999999999987 6
Q ss_pred CCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhc
Q 018557 219 KSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGM 298 (354)
Q Consensus 219 ~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~m 298 (354)
...++++|+||+|.|+++|.++||++|++|+++|++.++... ...+..+..+.++|++|||.||++|
T Consensus 160 l~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~~-------------~~~~~~~~~~~~vI~vGDs~~Dl~m 226 (277)
T TIGR01544 160 VYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALRN-------------TEYFNQLKDRSNIILLGDSQGDLRM 226 (277)
T ss_pred CCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHHH-------------HHHhCccCCcceEEEECcChhhhhH
Confidence 655789999999999999999999999999999998655211 0112223467899999999999999
Q ss_pred ccCC-CccceeeeeccchHHHhhHhhhcccccEEEEcCCChHHHHHHHHHH
Q 018557 299 SDGL-KYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQL 348 (354)
Q Consensus 299 a~gl-~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~~~~~~ll~~i 348 (354)
++|+ ..+++++|||||+++|++++.|++.||||+++|+||+||++||+.|
T Consensus 227 a~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~~il~~i 277 (277)
T TIGR01544 227 ADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVANSILQKI 277 (277)
T ss_pred hcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHHHHHhhC
Confidence 9999 4789999999999999999999999999999999999999999876
No 2
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.1e-71 Score=509.59 Aligned_cols=285 Identities=41% Similarity=0.672 Sum_probs=267.0
Q ss_pred hhhccCCCceEECChhHHHHHHHHHHhcCCCcEEEEEecccccccccc-cCccccchHHHhh-ccC---hhHHHHHHHHH
Q 018557 53 MENQDLSKFTIKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI-NGSRGQSSHGLLQ-QGN---PEYDAKRQALY 127 (354)
Q Consensus 53 ~~~~~~~~~v~i~d~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~-~g~~~ds~~~il~-~~~---~e~~~~~~~L~ 127 (354)
|-.+-..++|+|+||.+|++||++|+.+|+.++|||+|||+|||+|.+ .|.||+||+++|. .+. |+|++++.+||
T Consensus 7 ~~~~l~~~~v~vkdp~~v~~~l~~~v~gga~~~~vIsdfd~TLSrfa~~~G~r~pS~~~Vfd~~~~~~~~e~~~k~~~Ly 86 (298)
T KOG3128|consen 7 MNPLLGEEQVRVKDPTAVEAKLRKMVVGGAGKLQVISDFDYTLSRFATEQGKRCPSCFGVFDDNVKRLKPECRAKFVALY 86 (298)
T ss_pred cchhhCCcceeecChHHHHHHHHHHhcCCccceeEeecCchhHHHHHHhhcCcCCccccchhhhhhcCCHHHHHHHHHHH
Confidence 445567899999999999999999999999999999999999999988 5999999999999 443 89999999999
Q ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHH
Q 018557 128 EYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLAD 207 (354)
Q Consensus 128 ~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~ 207 (354)
++|+|||+||.+|++||+|+|+|||+++|+|++++|+++++|.++++++++.||+|..+|++.|++++||+.|||||+++
T Consensus 87 hkY~PIEidP~ltieEKvp~MeeWW~kSH~Lliq~~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGigd 166 (298)
T KOG3128|consen 87 HKYYPIEIDPVLTIEEKVPHMEEWWTKSHELLIQGGFSKNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGIGD 166 (298)
T ss_pred hhccCcccCCCCChhhhchHHHHHHhcccceeecCCcCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEE
Q 018557 208 IIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVL 287 (354)
Q Consensus 208 ~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI 287 (354)
+||+++++..+. +||++++||.+.|+++|.+.||++|+||++||+.+++.. .-..|..+..+.+||
T Consensus 167 iiEev~~q~~~~-~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~-------------~s~yf~~~~~~~nVi 232 (298)
T KOG3128|consen 167 IIEEVTRQKLVL-HPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQN-------------ESEYFHQLAGRVNVI 232 (298)
T ss_pred HHHHHHHHHhcc-CccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHh-------------hhHHHhhccCCceEE
Confidence 999999999654 789999999999999999999999999999999887743 122345667899999
Q ss_pred EEcCCCCChhcccCCC-ccceeeeeccchHHHhhHhhhcccccEEEEcCCChHHHHHHHHHHhcc
Q 018557 288 LLGDHIGDLGMSDGLK-YETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQLCSN 351 (354)
Q Consensus 288 ~iGDg~~Dl~ma~gl~-~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~~~~~~ll~~i~~~ 351 (354)
++|||++|+.|+.|++ ....++|||||+.+|++++.|++.||||+++|+||+|++.+++.|.++
T Consensus 233 llGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~~D~tldv~~s~l~~i~~~ 297 (298)
T KOG3128|consen 233 LLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLVHDETLDVANSILQIIESQ 297 (298)
T ss_pred EeccccccchhhcCCcccccceeeecccchHHHHHHHHHhhcceEEecCcccchhHHHHHHHHcc
Confidence 9999999999999994 778999999999999999999999999999999999999999999764
No 3
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=100.00 E-value=1.4e-70 Score=511.88 Aligned_cols=242 Identities=50% Similarity=0.793 Sum_probs=200.5
Q ss_pred cccccccccCccccchHHHhhccC---hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 018557 93 GTLTRYFINGSRGQSSHGLLQQGN---PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAI 169 (354)
Q Consensus 93 gTIT~~~~~g~~~ds~~~il~~~~---~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~glt~~~i 169 (354)
+|||+|++||+|++|||++++++. +++.+++++|+++|+|||+||+||.+||+|+|+|||+++|+++++.+++++++
T Consensus 1 ~TLT~f~~nG~r~~sshgil~~~~~~~~~~~~k~~~L~~kY~PIE~dp~~s~eEK~p~M~EWw~kah~llv~~~l~k~~i 80 (246)
T PF05822_consen 1 YTLTRFHYNGKRCPSSHGILENSKLLPEEYRKKLKELFEKYYPIEIDPTMSIEEKIPHMEEWWTKAHELLVEQGLTKSEI 80 (246)
T ss_dssp TTSB-SEETTEE---HHHHHHTSTTS-HHHHHHHHHHHHHHHHHHT-SSS-HHHHHHHHHHHHHHHHHHHHHHT-BGGGH
T ss_pred CeeeeeccCCeECCChHHHHhcCCcCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCcCHHHH
Confidence 699999999999999999999985 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCcccc
Q 018557 170 KKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHS 249 (354)
Q Consensus 170 ~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~ 249 (354)
.++++++++.||+|+.+|++.|++++||++|||||++++|+++|++. +..+||++|+||+|.||++|+++||++|+||+
T Consensus 81 ~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~-~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~ 159 (246)
T PF05822_consen 81 EEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA-GVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHT 159 (246)
T ss_dssp HHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT-T--BTTEEEEEE-EEE-TTSBEEEE-SS---T
T ss_pred HHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc-CCCCCCeEEEeeeEEECCcceEeecCCCceEE
Confidence 99999999999999999999999999999999999999999999998 77789999999999999999999999999999
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCC-CccceeeeeccchHHHhhHhhhcccc
Q 018557 250 LNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGL-KYETRISVGFLNDNIENNLDNYRNAF 328 (354)
Q Consensus 250 ~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl-~~d~vlaiGfL~~~~ee~l~~y~~~f 328 (354)
+||+++++.. ...+++++.|+|||++|||.+|+.|++|+ +.+++++|||||+++|++++.|++.|
T Consensus 160 ~NKn~~~l~~--------------~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~y 225 (246)
T PF05822_consen 160 FNKNESALED--------------SPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAY 225 (246)
T ss_dssp T-HHHHHHTT--------------HHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCS
T ss_pred eeCCcccccC--------------chHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcC
Confidence 9999987731 12245667899999999999999999999 78999999999999999999999999
Q ss_pred cEEEEcCCChHHHHHHHHHHh
Q 018557 329 DIVYLNDAPMWEVVELVSQLC 349 (354)
Q Consensus 329 DIV~v~d~t~~~~~~ll~~i~ 349 (354)
|||+++||||++|++||+.|+
T Consensus 226 DIVlv~D~tm~v~~~il~~I~ 246 (246)
T PF05822_consen 226 DIVLVDDQTMDVPNAILQSIL 246 (246)
T ss_dssp SEEEET--B-HHHHHHHHHH-
T ss_pred CEEEECCCCchHHHHHHHHhC
Confidence 999999999999999999986
No 4
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=5.8e-29 Score=220.61 Aligned_cols=201 Identities=20% Similarity=0.263 Sum_probs=160.7
Q ss_pred CcEEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 018557 83 SKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEG 162 (354)
Q Consensus 83 ~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~ 162 (354)
.+..|++|||||||. .|+-.-+..++++..|+ .|++.+. +.++|.++.+.+|++...
T Consensus 2 kk~vi~sDFDGTITl-------~Ds~~~itdtf~~~e~k---~l~~~vl----s~tiS~rd~~g~mf~~i~--------- 58 (220)
T COG4359 2 KKPVIFSDFDGTITL-------NDSNDYITDTFGPGEWK---ALKDGVL----SKTISFRDGFGRMFGSIH--------- 58 (220)
T ss_pred CceEEEecCCCceEe-------cchhHHHHhccCchHHH---HHHHHHh----hCceeHHHHHHHHHHhcC---------
Confidence 478999999999999 78889999999865555 5676664 799999999999977554
Q ss_pred CCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCC-CCcceEEeeeeEEcCCCcE-E
Q 018557 163 GLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKS-FKNVKIVSNRMVFDKDGHL-V 240 (354)
Q Consensus 163 glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~-~~ni~IvSN~~~fd~dG~l-~ 240 (354)
.+.+++.+++.+ ++.++|||+||+++++++++|++|+|||...+|..++++..|.. ..+++|+||...+..+|.+ +
T Consensus 59 -~s~~Eile~llk-~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i 136 (220)
T COG4359 59 -SSLEEILEFLLK-DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSI 136 (220)
T ss_pred -CCHHHHHHHHHh-hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceee
Confidence 556888888876 69999999999999999999999999999999999999987752 4578999999999999986 3
Q ss_pred ecCCCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhh
Q 018557 241 SFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENN 320 (354)
Q Consensus 241 gf~~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~ 320 (354)
-++.....+++|.. .++.|.+ +...++|+|||.+|+.+|+ .+|.+||+..|-.+|+++
T Consensus 137 ~~~~ds~fG~dK~~------------------vI~~l~e--~~e~~fy~GDsvsDlsaak--lsDllFAK~~L~nyc~eq 194 (220)
T COG4359 137 KYTDDSQFGHDKSS------------------VIHELSE--PNESIFYCGDSVSDLSAAK--LSDLLFAKDDLLNYCREQ 194 (220)
T ss_pred ecCCccccCCCcch------------------hHHHhhc--CCceEEEecCCcccccHhh--hhhhHhhHHHHHHHHHHc
Confidence 23322333334432 3333432 3456999999999999999 899999999999999997
Q ss_pred Hh---hhcccccE
Q 018557 321 LD---NYRNAFDI 330 (354)
Q Consensus 321 l~---~y~~~fDI 330 (354)
-. +|.+|+||
T Consensus 195 n~~f~~fe~F~eI 207 (220)
T COG4359 195 NLNFLEFETFYEI 207 (220)
T ss_pred CCCCcccccHHHH
Confidence 54 45555554
No 5
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.95 E-value=5.1e-27 Score=219.24 Aligned_cols=189 Identities=22% Similarity=0.234 Sum_probs=144.5
Q ss_pred EEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 018557 85 LQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGL 164 (354)
Q Consensus 85 l~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~gl 164 (354)
++|+||||+||+. ++|...+++..+++.+ ..+|.+.|.+ ..+.+++.++..+|.+.|+
T Consensus 1 ~LvvfDFD~TIvd-------~dsd~~v~~~l~~~~~--~~~l~~~~~~-------------~~wt~~m~~vl~~L~~~gv 58 (234)
T PF06888_consen 1 ILVVFDFDHTIVD-------QDSDDWVIELLPPEEL--PEELRESYPK-------------GGWTEYMDRVLQLLHEQGV 58 (234)
T ss_pred CEEEEeCCCCccC-------CccHHHHHHhcCCccc--HHHHHHhccc-------------cchHHHHHHHHHHHHHcCC
Confidence 3799999999999 7999999999885532 2234444321 1134667888889999999
Q ss_pred CHHHHHHHHHhcCCcccccHHHHHHHH--HhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEec
Q 018557 165 TYDAIKKSVSNALIAFRDGVVKLFEFL--EERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSF 242 (354)
Q Consensus 165 t~~~i~e~v~~~~i~LrpG~~efl~~L--~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf 242 (354)
|++++.+.++ ++++.||+.+++++| ++.|++++|+|+|+..+|+.+|+++ |....-.+||||+..|+++|++.-.
T Consensus 59 t~~~I~~~l~--~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~-gl~~~f~~I~TNpa~~~~~G~l~v~ 135 (234)
T PF06888_consen 59 TPEDIRDALR--SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH-GLRDCFSEIFTNPACFDADGRLRVR 135 (234)
T ss_pred CHHHHHHHHH--cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC-CCccccceEEeCCceecCCceEEEe
Confidence 9999999997 699999999999999 5689999999999999999999987 6522223899999999999998543
Q ss_pred CCCccccCCCCcccccccccccccCCCCCCCCcccccc-----CCCceEEEEcCCCCChhcccCC-Cccceeee
Q 018557 243 KGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASV-----KNRTNVLLLGDHIGDLGMSDGL-KYETRISV 310 (354)
Q Consensus 243 ~~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l-----~~r~~vI~iGDg~~Dl~ma~gl-~~d~vlai 310 (354)
+.. .|.|..+...+||.. .++.+.+- ..+++|||||||.||+|++..+ ..|.|+++
T Consensus 136 pyh-~h~C~~C~~NmCK~~-----------il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R 197 (234)
T PF06888_consen 136 PYH-SHGCSLCPPNMCKGK-----------ILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPR 197 (234)
T ss_pred Ccc-CCCCCcCCCccchHH-----------HHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecC
Confidence 321 177776655566642 22222211 1468999999999999999888 58888665
No 6
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.94 E-value=6.4e-27 Score=214.98 Aligned_cols=211 Identities=16% Similarity=0.200 Sum_probs=155.6
Q ss_pred EEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018557 86 QVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLT 165 (354)
Q Consensus 86 ~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~glt 165 (354)
||+||||||||+ .|+.+.+++.++++.++++.+ .++ ++++|.+|+++.|+.||....
T Consensus 1 ~~~fDFDgTit~-------~d~~~~~~~~~~~~~~~~~~~---~~~----~g~~~~~e~~~~~~~~~~~~~--------- 57 (214)
T TIGR03333 1 FIICDFDGTITN-------NDNIISIMKQFAPPEWEALKD---GVL----SKTLSIQEGVGRMFGLLPSSL--------- 57 (214)
T ss_pred CEEeccCCCCCc-------chhHHHHHHHhCcHHHHHHHH---HHH----cCCccHHHHHHHHHhhCCCch---------
Confidence 689999999999 689999999988665665544 333 378999999999999997432
Q ss_pred HHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCC
Q 018557 166 YDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGK 245 (354)
Q Consensus 166 ~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~ 245 (354)
.+++.+++.+ .++++||+.+++++|+++|++++|+|+|...+|+.+|+.. +. ...|+||++.|++++.-..++.|
T Consensus 58 ~~~~~~~~~~-~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~---~~~i~~n~~~~~~~~~~~~~p~~ 132 (214)
T TIGR03333 58 KEEITSFVLE-TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI-VE---KDRIYCNEADFSNEYIHIDWPHP 132 (214)
T ss_pred HHHHHHHHHh-cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh-CC---cccEEeceeEeeCCeeEEeCCCC
Confidence 4677777665 5899999999999999999999999999999999999976 32 24799999999754433556655
Q ss_pred ccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhc
Q 018557 246 TIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYR 325 (354)
Q Consensus 246 ~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~ 325 (354)
....+.. .|+.||.. .++.+. ....+++|||||.+|++|+. .+|.++++++|.+++++...+|.
T Consensus 133 ~~~~~~~-~cg~~K~~-----------~l~~~~--~~~~~~i~iGDg~~D~~~a~--~Ad~~~ar~~l~~~~~~~~~~~~ 196 (214)
T TIGR03333 133 CDGTCQN-QCGCCKPS-----------LIRKLS--EPNDYHIVIGDSVTDVEAAK--QSDLCFARDYLLNECEELGLNHA 196 (214)
T ss_pred Ccccccc-CCCCCHHH-----------HHHHHh--hcCCcEEEEeCCHHHHHHHH--hCCeeEehHHHHHHHHHcCCCcc
Confidence 5432211 12333321 122222 13457999999999999998 78999999999998888766554
Q ss_pred ccccEEEEcCCChHHHHHHHHHH
Q 018557 326 NAFDIVYLNDAPMWEVVELVSQL 348 (354)
Q Consensus 326 ~~fDIV~v~d~t~~~~~~ll~~i 348 (354)
.+ ++|.-+...|+.+
T Consensus 197 ~~--------~~f~di~~~l~~~ 211 (214)
T TIGR03333 197 PF--------QDFYDVRKELENV 211 (214)
T ss_pred Cc--------CCHHHHHHHHHHH
Confidence 43 3455555555443
No 7
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.93 E-value=2.8e-25 Score=204.61 Aligned_cols=214 Identities=16% Similarity=0.209 Sum_probs=155.6
Q ss_pred cEEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 018557 84 KLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGG 163 (354)
Q Consensus 84 kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~g 163 (354)
+.+|+||||||||. .++...+++++++..++++.+.+ + ++++++++.++.|.+||...
T Consensus 3 ~~~vifDfDgTi~~-------~d~~~~~~~~~~~~~~~~i~~~~---~----~g~~~~~~~~~~~~~~l~~~-------- 60 (219)
T PRK09552 3 SIQIFCDFDGTITN-------NDNIIAIMKKFAPPEWEELKDDI---L----SQELSIQEGVGQMFQLLPSN-------- 60 (219)
T ss_pred CcEEEEcCCCCCCc-------chhhHHHHHHhCHHHHHHHHHHH---H----hCCcCHHHHHHHHHHhCCCC--------
Confidence 55899999999999 46667778888764455544444 3 47899999999999987622
Q ss_pred CCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC
Q 018557 164 LTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK 243 (354)
Q Consensus 164 lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~ 243 (354)
..+++.+++.+ .++++||+.+++++|+++|++++|+|+|...+|+.+|++. - +...|+||...|++++....++
T Consensus 61 -~~~~~~~~~~~-~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~---~~~~i~~n~~~~~~~~~~~~kp 134 (219)
T PRK09552 61 -LKEEIIQFLLE-TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-I---PKEQIYCNGSDFSGEYITITWP 134 (219)
T ss_pred -chHHHHHHHHh-CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-C---CcCcEEEeEEEecCCeeEEecc
Confidence 24677776654 5899999999999999999999999999999999999976 2 2257999999998665445566
Q ss_pred CCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhh
Q 018557 244 GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDN 323 (354)
Q Consensus 244 ~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~ 323 (354)
.|..+.+... ++.+|.. .++.+. ....+++|||||.+|++|++ .++.++++++|.++++++..+
T Consensus 135 ~p~~~~~~~~-~~~~K~~-----------~l~~~~--~~~~~~i~iGDs~~Di~aa~--~Ag~~~a~~~l~~~~~~~~~~ 198 (219)
T PRK09552 135 HPCDEHCQNH-CGCCKPS-----------LIRKLS--DTNDFHIVIGDSITDLEAAK--QADKVFARDFLITKCEELGIP 198 (219)
T ss_pred CCcccccccc-CCCchHH-----------HHHHhc--cCCCCEEEEeCCHHHHHHHH--HCCcceeHHHHHHHHHHcCCC
Confidence 6654322110 1111110 111221 13458999999999999998 788899999998888887665
Q ss_pred hcccccEEEEcCCChHHHHHHHHHHh
Q 018557 324 YRNAFDIVYLNDAPMWEVVELVSQLC 349 (354)
Q Consensus 324 y~~~fDIV~v~d~t~~~~~~ll~~i~ 349 (354)
|..+ .+|.-+...|+.+.
T Consensus 199 ~~~~--------~~f~ei~~~l~~~~ 216 (219)
T PRK09552 199 YTPF--------ETFHDVQTELKHLL 216 (219)
T ss_pred cccc--------CCHHHHHHHHHHHh
Confidence 5443 56776766666553
No 8
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.89 E-value=3.3e-23 Score=188.77 Aligned_cols=200 Identities=20% Similarity=0.210 Sum_probs=157.6
Q ss_pred hcCCCcEEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018557 79 MAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGL 158 (354)
Q Consensus 79 ~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~l 158 (354)
+.+..+.+++||||.||.. ++|..++.+..+ ..+..++|...|. + ..+.|.+.++++.
T Consensus 8 ~~~~~ril~~FDFD~TIid-------~dSD~wVv~~lp--~~~l~~qL~~t~p-----------~--~~Wne~M~rv~k~ 65 (256)
T KOG3120|consen 8 ASSSPRILLVFDFDRTIID-------QDSDNWVVDELP--TTDLFNQLRDTYP-----------K--GFWNELMDRVFKE 65 (256)
T ss_pred cccCCcEEEEEecCceeec-------CCcchHHHHhcc--cchhHHHHHHhcc-----------c--chHHHHHHHHHHH
Confidence 4567899999999999999 688888888765 2233344554441 0 2355778889999
Q ss_pred HHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCC-CEEEEecChHHHHHHHHHHhcCC--CCCcceEEeeeeEEcC
Q 018557 159 LIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDI-PVLIFSAGLADIIEEVLRQKVHK--SFKNVKIVSNRMVFDK 235 (354)
Q Consensus 159 l~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gi-pv~I~SaG~~~~Ie~vL~~~~g~--~~~ni~IvSN~~~fd~ 235 (354)
|+++|++.+++.+.++ .+++.||+.++++.+++.|- .+.|+|+++..+|+.+|+.+ ++ .| .+|++|+..||+
T Consensus 66 Lheqgv~~~~ik~~~r--~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~-~~~d~F--~~IfTNPa~~da 140 (256)
T KOG3120|consen 66 LHEQGVRIAEIKQVLR--SIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAA-GIHDLF--SEIFTNPACVDA 140 (256)
T ss_pred HHHcCCCHHHHHHHHh--cCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHc-cHHHHH--HHHhcCCcccCC
Confidence 9999999999999998 59999999999999999994 99999999999999999987 54 24 389999999999
Q ss_pred CCcEEecCCCccccCCCCcccccccccccccCCCCCCCCccccc--c---CCCceEEEEcCCCCChhcccCC-Cccce-e
Q 018557 236 DGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNAS--V---KNRTNVLLLGDHIGDLGMSDGL-KYETR-I 308 (354)
Q Consensus 236 dG~l~gf~~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~--l---~~r~~vI~iGDg~~Dl~ma~gl-~~d~v-l 308 (354)
+|.+.--+.-..|+|+.+...+||.. ++.++.. + ..+.++||+|||.||+|+...+ .+|++ .
T Consensus 141 ~G~L~v~pyH~~hsC~~CPsNmCKg~-----------Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~amp 209 (256)
T KOG3120|consen 141 SGRLLVRPYHTQHSCNLCPSNMCKGL-----------VLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMP 209 (256)
T ss_pred CCcEEeecCCCCCccCcCchhhhhhH-----------HHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecc
Confidence 99996555556788988877777632 2222211 1 1455999999999999999888 57766 7
Q ss_pred eeeccchH
Q 018557 309 SVGFLNDN 316 (354)
Q Consensus 309 aiGfL~~~ 316 (354)
++||--.+
T Consensus 210 Rkgfpl~k 217 (256)
T KOG3120|consen 210 RKGFPLWK 217 (256)
T ss_pred cCCCchHh
Confidence 88998666
No 9
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.84 E-value=2.6e-20 Score=165.21 Aligned_cols=187 Identities=18% Similarity=0.226 Sum_probs=128.3
Q ss_pred cEEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 018557 84 KLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGG 163 (354)
Q Consensus 84 kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~g 163 (354)
|+.|||||||||+. .++...+++.+.++.+++. .+.+.... ...+.. +++. ..+...+
T Consensus 1 ~~~iiFD~dgTL~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~-------~~~~---~~~~~~~ 58 (188)
T TIGR01489 1 KVVVVSDFDGTITL-------NDSDDWITDKFGPPEANRL---LDGVLSKT--LSIKFM-------DRRM---KGLLPSG 58 (188)
T ss_pred CeEEEEeCCCcccC-------CCchHHHHHhcCcchhhHH---HHHHhhcC--CchHHH-------HHHH---HHHhhcC
Confidence 57899999999999 3556667776654434433 22222100 111221 2222 1233467
Q ss_pred CCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC
Q 018557 164 LTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK 243 (354)
Q Consensus 164 lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~ 243 (354)
++.+++.+++.. ++++||+.++++.|+++|++++|+|+|....++.++++. +...--..|++|.+.|+++|.+.+++
T Consensus 59 ~~~~~~~~~~~~--~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~f~~i~~~~~~~~~~g~~~~~~ 135 (188)
T TIGR01489 59 LKEDEILEVLKS--APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI-GEKDVFIEIYSNPASFDNDGRHIVWP 135 (188)
T ss_pred CCHHHHHHHHHh--CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc-CChhheeEEeccCceECCCCcEEEec
Confidence 888889988864 799999999999999999999999999999999999876 54110137999999999999998887
Q ss_pred CCccccCCCCcccccccccccccCCCCCCCCccccccCC-CceEEEEcCCCCChhcccCCCccceeeee
Q 018557 244 GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKN-RTNVLLLGDHIGDLGMSDGLKYETRISVG 311 (354)
Q Consensus 244 ~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-r~~vI~iGDg~~Dl~ma~gl~~d~vlaiG 311 (354)
.++..+. ....+.+|. ..++.+. .. ..+++|+|||.+|++||+ .+|.+||++
T Consensus 136 ~~~~~~~-~~~~g~~K~-----------~~~~~~~--~~~~~~~i~iGD~~~D~~aa~--~~d~~~ar~ 188 (188)
T TIGR01489 136 HHCHGCC-SCPCGCCKG-----------KVIHKLS--EPKYQHIIYIGDGVTDVCPAK--LSDVVFAKE 188 (188)
T ss_pred CCCCccC-cCCCCCCHH-----------HHHHHHH--hhcCceEEEECCCcchhchHh--cCCccccCC
Confidence 6544322 222222221 1222222 12 578999999999999999 789999874
No 10
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.84 E-value=5.4e-21 Score=171.37 Aligned_cols=204 Identities=20% Similarity=0.213 Sum_probs=148.1
Q ss_pred cEEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 018557 84 KLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGG 163 (354)
Q Consensus 84 kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~g 163 (354)
+-.|+||.|.|+.. +-+.+.|..+.. ..++..+..+..+-.| ++++|.++.-...++
T Consensus 16 ~~aVcFDvDSTvi~--------eEgIdelA~~~G-~~~~Va~~T~rAMng~----~~F~eaL~~Rl~llq---------- 72 (227)
T KOG1615|consen 16 ADAVCFDVDSTVIQ--------EEGIDELAAYCG-VGEAVAEVTRRAMNGE----ADFQEALAARLSLLQ---------- 72 (227)
T ss_pred cCeEEEecCcchhH--------HhhHHHHHHHhC-chHHHHHHHHHHhCCC----CcHHHHHHHHHHHhc----------
Confidence 34799999999998 334444444321 2244445555665444 555554432222222
Q ss_pred CCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC
Q 018557 164 LTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK 243 (354)
Q Consensus 164 lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~ 243 (354)
-+..++++++.+.++.|.||++||+..|+++|..++++|+|+..+|++|-.+. |+ |-..||||.|.|+.+|++.||+
T Consensus 73 p~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L-gi--~~~n~yAN~l~fd~~Gk~~gfd 149 (227)
T KOG1615|consen 73 PLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL-GI--PKSNIYANELLFDKDGKYLGFD 149 (227)
T ss_pred ccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh-CC--cHhhhhhheeeeccCCcccccc
Confidence 34677888888889999999999999999999999999999999999997765 86 4447999999999999999998
Q ss_pred --CCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeec----cchHH
Q 018557 244 --GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGF----LNDNI 317 (354)
Q Consensus 244 --~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGf----L~~~~ 317 (354)
+|+..+..|.+.....+ .-.+...+++||||.||+.|+. +++. .||| +.+.|
T Consensus 150 ~~~ptsdsggKa~~i~~lr------------------k~~~~~~~~mvGDGatDlea~~--pa~a--fi~~~g~~~r~~v 207 (227)
T KOG1615|consen 150 TNEPTSDSGGKAEVIALLR------------------KNYNYKTIVMVGDGATDLEAMP--PADA--FIGFGGNVIREGV 207 (227)
T ss_pred cCCccccCCccHHHHHHHH------------------hCCChheeEEecCCccccccCC--chhh--hhccCCceEcHhh
Confidence 57888777776543211 1124568999999999999987 4443 3443 35778
Q ss_pred HhhHhhhcccccEEEEcC
Q 018557 318 ENNLDNYRNAFDIVYLND 335 (354)
Q Consensus 318 ee~l~~y~~~fDIV~v~d 335 (354)
..+.+||.+.|++...++
T Consensus 208 k~nak~~~~~f~~L~~~l 225 (227)
T KOG1615|consen 208 KANAKWYVTDFYVLGGDL 225 (227)
T ss_pred HhccHHHHHHHHHHcccc
Confidence 889999999888765543
No 11
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.82 E-value=7.4e-20 Score=161.26 Aligned_cols=169 Identities=25% Similarity=0.313 Sum_probs=118.9
Q ss_pred EEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 018557 87 VIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTY 166 (354)
Q Consensus 87 Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~glt~ 166 (354)
++||||||||. .++.+.++++..+. ..+..++.+.|.. +.++..+.+......|. +...
T Consensus 2 ~~fD~DgTl~~-------~~s~~~~~~~~~~~-~~~~~~~~~~~~~----g~i~~~~~~~~~~~~~~---------~~~~ 60 (177)
T TIGR01488 2 AIFDFDGTLTR-------QDSLIDLLAKLLGT-NDEVIELTRLAPS----GRISFEDALGRRLALLH---------RSRS 60 (177)
T ss_pred EEecCcccccc-------chhhHHHHHHHhCC-hHHHHHHHHHHHC----CCCCHHHHHHHHHHHhC---------CCCH
Confidence 79999999999 68889888886531 1233344444543 56777776655544443 4554
Q ss_pred HHHHH-HHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC-C
Q 018557 167 DAIKK-SVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK-G 244 (354)
Q Consensus 167 ~~i~e-~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~-~ 244 (354)
+++.+ ++.+ .++++||+.++++.++++|++++|+|+|...+|+.+++.. |. + .+++|.+.++++|.++|.. +
T Consensus 61 ~~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~-g~--~--~~~~~~~~~~~~g~~~g~~~~ 134 (177)
T TIGR01488 61 EEVAKEFLAR-QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL-GI--D--DVFANRLEFDDNGLLTGPIEG 134 (177)
T ss_pred HHHHHHHHHh-cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CC--c--hheeeeEEECCCCEEeCccCC
Confidence 56655 6554 5889999999999999999999999999999999999886 64 3 7999999998889777632 2
Q ss_pred -CccccCCCCcccccccccccccCCCCCCCCccc-cccC-CCceEEEEcCCCCChhccc
Q 018557 245 -KTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDN-ASVK-NRTNVLLLGDHIGDLGMSD 300 (354)
Q Consensus 245 -~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~-~r~~vI~iGDg~~Dl~ma~ 300 (354)
+.....+|... ++.+ .+.+ +..+++|+|||.+|++|++
T Consensus 135 ~~~~~~~~K~~~------------------l~~~~~~~~~~~~~~~~iGDs~~D~~~~~ 175 (177)
T TIGR01488 135 QVNPEGECKGKV------------------LKELLEESKITLKKIIAVGDSVNDLPMLK 175 (177)
T ss_pred cccCCcchHHHH------------------HHHHHHHhCCCHHHEEEEeCCHHHHHHHh
Confidence 22222233221 1111 1111 3468999999999999986
No 12
>PLN02954 phosphoserine phosphatase
Probab=99.82 E-value=2.3e-19 Score=164.63 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=127.7
Q ss_pred EEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018557 86 QVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLT 165 (354)
Q Consensus 86 ~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~glt 165 (354)
.||||||||||. .++...++++++.. .+.+++.+.|. .++++.+|-+..+...|. .+
T Consensus 14 ~viFDfDGTL~~-------~~~~~~~~~~~g~~--~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~----------~~ 70 (224)
T PLN02954 14 AVCFDVDSTVCV-------DEGIDELAEFCGAG--EAVAEWTAKAM----GGSVPFEEALAARLSLFK----------PS 70 (224)
T ss_pred EEEEeCCCcccc-------hHHHHHHHHHcCCh--HHHHHHHHHHH----CCCCCHHHHHHHHHHHcC----------CC
Confidence 677899999999 57778888888731 23333445554 356777765555443332 34
Q ss_pred HHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCC
Q 018557 166 YDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGK 245 (354)
Q Consensus 166 ~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~ 245 (354)
.+++.+++++....++||+.+++++|+++|++++|+|+|....++.+++.. |. +..++++|.+.|+++|.++|+...
T Consensus 71 ~~~~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~-gi--~~~~~~~~~~~~~~~g~~~g~~~~ 147 (224)
T PLN02954 71 LSQVEEFLEKRPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL-GI--PPENIFANQILFGDSGEYAGFDEN 147 (224)
T ss_pred HHHHHHHHHHccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh-CC--ChhhEEEeEEEEcCCCcEECccCC
Confidence 667777777655789999999999999999999999999999999999976 64 333699999999999999887531
Q ss_pred --ccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeecc
Q 018557 246 --TIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFL 313 (354)
Q Consensus 246 --~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL 313 (354)
......|.+... .+.......+++|+|||.+|++|+....++.+++.|..
T Consensus 148 ~~~~~~~~K~~~i~------------------~~~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~ 199 (224)
T PLN02954 148 EPTSRSGGKAEAVQ------------------HIKKKHGYKTMVMIGDGATDLEARKPGGADLFIGYGGV 199 (224)
T ss_pred CcccCCccHHHHHH------------------HHHHHcCCCceEEEeCCHHHHHhhhcCCCCEEEecCCC
Confidence 111122332111 11110123579999999999999873235666665543
No 13
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.76 E-value=1.4e-17 Score=149.32 Aligned_cols=181 Identities=25% Similarity=0.329 Sum_probs=121.2
Q ss_pred EEEEecccccccccccCccccchHHHhhc-cC-hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 018557 86 QVIADFDGTLTRYFINGSRGQSSHGLLQQ-GN-PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGG 163 (354)
Q Consensus 86 ~Vi~DFDgTIT~~~~~g~~~ds~~~il~~-~~-~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~g 163 (354)
.|+|||||||+. .++.+..+.. ++ +...... .+.|. .+.++..+....+.++|.... ..
T Consensus 6 ~viFD~DGTLid-------~~~~~~~~~~~~~~~~~~~~~---~~~~~----~g~~~~~~~~~~~~~~~~~~~-----~~ 66 (201)
T TIGR01491 6 LIIFDLDGTLTD-------VMSSWEYLHRRLETCGLAKKN---AELFF----SGRISYEEWARLDASLWKRRS-----GR 66 (201)
T ss_pred EEEEeCCCCCcC-------CccHHHHHHHHhCchHHHHHH---HHHHH----cCCCCHHHHHHHHHHHHhhcc-----cC
Confidence 599999999999 4455555544 33 2222222 22232 367888888877777776432 24
Q ss_pred CCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC
Q 018557 164 LTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK 243 (354)
Q Consensus 164 lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~ 243 (354)
+..+++.+... .+.++||+.++++.|+++|++++|+|+|...+++.+++.. |. . .+++|.+.++++|......
T Consensus 67 ~~~~~~~~~~~--~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-g~--~--~~~~~~~~~~~~g~~~p~~ 139 (201)
T TIGR01491 67 LRREEVEEIFK--EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL-NP--D--YVYSNELVFDEKGFIQPDG 139 (201)
T ss_pred CCHHHHHHHHH--hCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh-CC--C--eEEEEEEEEcCCCeEecce
Confidence 56777777765 4789999999999999999999999999999999999886 64 2 6899999998777665321
Q ss_pred CCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeee
Q 018557 244 GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISV 310 (354)
Q Consensus 244 ~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlai 310 (354)
.......+|.+... . ..+.+ .+ ...+++|+|||.+|++|+. .++..+++
T Consensus 140 ~~~~~~~~k~~~~~-~-------------~~~~~-~~-~~~~~i~iGDs~~D~~~a~--~ag~~~a~ 188 (201)
T TIGR01491 140 IVRVTFDNKGEAVE-R-------------LKREL-NP-SLTETVAVGDSKNDLPMFE--VADISISL 188 (201)
T ss_pred eeEEccccHHHHHH-H-------------HHHHh-CC-CHHHEEEEcCCHhHHHHHH--hcCCeEEE
Confidence 11122223322111 0 00111 11 3457999999999999998 55555443
No 14
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.70 E-value=1.7e-16 Score=155.32 Aligned_cols=222 Identities=15% Similarity=0.173 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHhc----------CC---CcEEEEEecccccccccccCccccchHHHhhccC-hhHHHHHHHHHHhhCCC
Q 018557 68 QSLQNKISQIRMA----------GP---SKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN-PEYDAKRQALYEYYHPL 133 (354)
Q Consensus 68 ~~~~~k~~~~~~~----------g~---~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~-~e~~~~~~~L~~~y~p~ 133 (354)
..+...+..+... ++ ..-.|+|||||||+. .++...+.+..+ ++ +..+..+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~LvvfDmDGTLI~-------~e~i~eia~~~g~~~---~v~~it~~~m~G 150 (322)
T PRK11133 81 GSLTPRATRLAHELGLDVAPLGKIPHLRTPGLLVMDMDSTAIQ-------IECIDEIAKLAGTGE---EVAEVTERAMRG 150 (322)
T ss_pred hhHHHHHHHHHhhcCCcEEEecCcccccCCCEEEEECCCCCcc-------hHHHHHHHHHhCCch---HHHHHHHHHHcC
Confidence 4566666655443 33 245699999999997 456666666654 23 333344445444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHH
Q 018557 134 EFSPTVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVL 213 (354)
Q Consensus 134 E~d~~is~~Ek~~~m~ew~~~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL 213 (354)
.++.++.+..... ++ .|.+.+.+.++.+ .++++||+.+++++|++.|++++|+|+|+..+++.++
T Consensus 151 ----eldf~esl~~rv~-------~l--~g~~~~il~~v~~--~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~ 215 (322)
T PRK11133 151 ----ELDFEASLRQRVA-------TL--KGADANILQQVRE--NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLR 215 (322)
T ss_pred ----CcCHHHHHHHHHH-------Hh--CCCCHHHHHHHHH--hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHH
Confidence 4566654443221 11 3555555655544 5899999999999999999999999999999998887
Q ss_pred HHhcCCCCCcceEEeeeeEEcCCCcEEec-CCCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCC
Q 018557 214 RQKVHKSFKNVKIVSNRMVFDKDGHLVSF-KGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDH 292 (354)
Q Consensus 214 ~~~~g~~~~ni~IvSN~~~fd~dG~l~gf-~~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg 292 (354)
++. +. .++++|.+.+. +|.++|. .++.++...|.+.... ..+.+ .+ +..+++++|||
T Consensus 216 ~~L-gl----d~~~an~lei~-dg~ltg~v~g~iv~~k~K~~~L~~--------------la~~l-gi-~~~qtIaVGDg 273 (322)
T PRK11133 216 DKL-RL----DAAVANELEIM-DGKLTGNVLGDIVDAQYKADTLTR--------------LAQEY-EI-PLAQTVAIGDG 273 (322)
T ss_pred HHc-CC----CeEEEeEEEEE-CCEEEeEecCccCCcccHHHHHHH--------------HHHHc-CC-ChhhEEEEECC
Confidence 765 64 27999999995 6888764 3444443334322110 00111 11 35689999999
Q ss_pred CCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCChHHHHHHHHH
Q 018557 293 IGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQ 347 (354)
Q Consensus 293 ~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~~~~~~ll~~ 347 (354)
.||+.|+. .++..++ | |-+ +.-+...|.++ +...++.++.||..
T Consensus 274 ~NDl~m~~--~AGlgiA--~-nAk-----p~Vk~~Ad~~i-~~~~l~~~l~~~~~ 317 (322)
T PRK11133 274 ANDLPMIK--AAGLGIA--Y-HAK-----PKVNEQAQVTI-RHADLMGVLCILSG 317 (322)
T ss_pred HHHHHHHH--HCCCeEE--e-CCC-----HHHHhhCCEEe-cCcCHHHHHHHhcc
Confidence 99999998 5554333 4 321 11133456655 68888999888754
No 15
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.68 E-value=8.2e-16 Score=140.65 Aligned_cols=174 Identities=21% Similarity=0.284 Sum_probs=116.2
Q ss_pred EEEEecccccccccccCccccchHHHhhccC-hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 018557 86 QVIADFDGTLTRYFINGSRGQSSHGLLQQGN-PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGL 164 (354)
Q Consensus 86 ~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~-~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~gl 164 (354)
.|+|||||||+. .++.+.+++.++ +.... +++.+|. .+.++.++..+.... .+ .+.
T Consensus 16 ~iiFD~DGTL~~-------~~~~~~l~~~~g~~~~~~---~~~~~~~----~g~~~~~~~~~~~~~-------~~--~~~ 72 (219)
T TIGR00338 16 LVVFDMDSTLIN-------AETIDEIAKIAGVEEEVS---EITERAM----RGELDFKASLRERVA-------LL--KGL 72 (219)
T ss_pred EEEEeCcccCCC-------chHHHHHHHHhCCHHHHH---HHHHHHH----cCCCCHHHHHHHHHH-------Hh--CCC
Confidence 799999999999 456677777766 22222 3344443 345666654433222 11 356
Q ss_pred CHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC-
Q 018557 165 TYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK- 243 (354)
Q Consensus 165 t~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~- 243 (354)
+.+.+.++.+ .++++||+.++++.|+++|++++|+|+|....++.++++. +. + .+++|.+.++ +|.+++..
T Consensus 73 ~~~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-~i--~--~~~~~~~~~~-~~~~~~~~~ 144 (219)
T TIGR00338 73 PVELLKEVRE--NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL-GL--D--AAFANRLEVE-DGKLTGLVE 144 (219)
T ss_pred CHHHHHHHHh--cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CC--C--ceEeeEEEEE-CCEEEEEec
Confidence 6777777765 4789999999999999999999999999999999999876 64 2 5899999997 57776642
Q ss_pred CCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCcccee
Q 018557 244 GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRI 308 (354)
Q Consensus 244 ~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vl 308 (354)
++......|.. .... ..+.+ .+ +..+++++|||.+|+.++. .++..+
T Consensus 145 ~~~~~~~~k~~-~~~~-------------~~~~~-~~-~~~~~i~iGDs~~Di~aa~--~ag~~i 191 (219)
T TIGR00338 145 GPIVDASYKGK-TLLI-------------LLRKE-GI-SPENTVAVGDGANDLSMIK--AAGLGI 191 (219)
T ss_pred CcccCCcccHH-HHHH-------------HHHHc-CC-CHHHEEEEECCHHHHHHHH--hCCCeE
Confidence 32221111221 1110 01111 11 3468999999999999998 444433
No 16
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.67 E-value=4.5e-16 Score=143.84 Aligned_cols=172 Identities=22% Similarity=0.282 Sum_probs=123.7
Q ss_pred CcEEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 018557 83 SKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEG 162 (354)
Q Consensus 83 ~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~ 162 (354)
.+-.++||||+||+. ..++..+.... ....++.+..++.++++. ..++..+.-..+| .
T Consensus 4 ~~~L~vFD~D~TLi~--------~~~~~~~~~~~-g~~~~v~~~t~~~~~~~~----~~~~~~~~~v~~l---------~ 61 (212)
T COG0560 4 MKKLAVFDLDGTLIN--------AELIDELARGA-GVGEEVLAITERAMRGEL----DFEESLRLRVALL---------K 61 (212)
T ss_pred ccceEEEecccchhh--------HHHHHHHHHHh-CCHHHHHHHHHHHhcccc----cHHHHHHHHHHHh---------C
Confidence 345789999999998 34666666543 122444455555555554 4554444433444 3
Q ss_pred CCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEec
Q 018557 163 GLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSF 242 (354)
Q Consensus 163 glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf 242 (354)
|++.+.+.++.++. +.++||+.+++++++++|..++|+|||+..+++++.+.. |.. .++||.+..++ |.++|.
T Consensus 62 g~~~~~v~~~~~~~-~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l-g~d----~~~an~l~~~d-G~ltG~ 134 (212)
T COG0560 62 GLPVEVLEEVREEF-LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL-GID----YVVANELEIDD-GKLTGR 134 (212)
T ss_pred CCCHHHHHHHHHhc-CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh-CCc----hheeeEEEEeC-CEEece
Confidence 89999999998853 899999999999999999999999999999999998876 753 79999999986 877875
Q ss_pred C-CCccccCCCCcccccccccccccCCCCCCCCccccccC-CCceEEEEcCCCCChhccc
Q 018557 243 K-GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVK-NRTNVLLLGDHIGDLGMSD 300 (354)
Q Consensus 243 ~-~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~r~~vI~iGDg~~Dl~ma~ 300 (354)
. ++....-+|.....+.. ...+ .-.+++.+|||.||+.|..
T Consensus 135 v~g~~~~~~~K~~~l~~~~-----------------~~~g~~~~~~~a~gDs~nDlpml~ 177 (212)
T COG0560 135 VVGPICDGEGKAKALRELA-----------------AELGIPLEETVAYGDSANDLPMLE 177 (212)
T ss_pred eeeeecCcchHHHHHHHHH-----------------HHcCCCHHHeEEEcCchhhHHHHH
Confidence 4 45555445554322111 1111 2358999999999999987
No 17
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.62 E-value=4.1e-15 Score=134.50 Aligned_cols=158 Identities=20% Similarity=0.279 Sum_probs=111.4
Q ss_pred EEEEecccccccccccCccccchHHHhhccC-hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 018557 86 QVIADFDGTLTRYFINGSRGQSSHGLLQQGN-PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGKTHGLLIEGGL 164 (354)
Q Consensus 86 ~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~-~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~~~~ll~~~gl 164 (354)
.|+||||||||. . +...+.++++ ++.++ .. ...++++ +|+.+..+++...++
T Consensus 3 ~v~FD~DGTL~~-------~-~~~~~~~~~g~~~~~~----~~--------~~~~~~~-------~~~~~~~~~l~~~~~ 55 (205)
T PRK13582 3 IVCLDLEGVLVP-------E-IWIAFAEKTGIPELRA----TT--------RDIPDYD-------VLMKQRLDILDEHGL 55 (205)
T ss_pred EEEEeCCCCChh-------h-HHHHHHHHcCChHHHH----Hh--------cCCCCHH-------HHHHHHHHHHHHcCC
Confidence 689999999995 2 2233445554 33211 11 1123333 456666667777789
Q ss_pred CHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC
Q 018557 165 TYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG 244 (354)
Q Consensus 165 t~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~ 244 (354)
+.+++.+.++ .+++.||+.++++.|+++ ++++|+|++...+++.++++. +. + .+++|.+.++++|.++++..
T Consensus 56 ~~~~i~~~~~--~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~-gl--~--~~f~~~~~~~~~~~i~~~~~ 127 (205)
T PRK13582 56 GLADIQEVIA--TLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL-GW--P--TLFCHSLEVDEDGMITGYDL 127 (205)
T ss_pred CHHHHHHHHH--hCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc-CC--c--hhhcceEEECCCCeEECccc
Confidence 9999998876 478999999999999999 999999999999999999986 64 3 68899999988888877642
Q ss_pred CccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhccc
Q 018557 245 KTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSD 300 (354)
Q Consensus 245 ~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~ 300 (354)
+ ++..|... + +.+.. ...+++++|||.+|+.|+.
T Consensus 128 ~--~p~~k~~~-l-----------------~~~~~--~~~~~v~iGDs~~D~~~~~ 161 (205)
T PRK13582 128 R--QPDGKRQA-V-----------------KALKS--LGYRVIAAGDSYNDTTMLG 161 (205)
T ss_pred c--ccchHHHH-H-----------------HHHHH--hCCeEEEEeCCHHHHHHHH
Confidence 1 11122111 1 11111 2358999999999999987
No 18
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.59 E-value=5.7e-15 Score=135.55 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEe
Q 018557 149 EEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVS 228 (354)
Q Consensus 149 ~ew~~~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvS 228 (354)
.++.....+++...|++.++++++++ .++++||+.++++.|++++ +++|+|+|+..++++++++. |. + +++|
T Consensus 40 ~~~~~~r~~ll~~~g~~~~~i~~~~~--~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l-gi--~--~~~a 111 (203)
T TIGR02137 40 DVLMKQRLRILDEHGLKLGDIQEVIA--TLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL-GF--P--TLLC 111 (203)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHH--hCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc-CC--c--hhhc
Confidence 34444555666667999999999987 5799999999999999975 99999999999999999876 75 3 6999
Q ss_pred eeeEEcCCCcEEecCCCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccC
Q 018557 229 NRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDG 301 (354)
Q Consensus 229 N~~~fd~dG~l~gf~~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~g 301 (354)
|++.++++|.++|... .....|... ++.++. ...+++++|||.||++|+..
T Consensus 112 n~l~~~~~g~~tG~~~--~~~~~K~~~------------------l~~l~~--~~~~~v~vGDs~nDl~ml~~ 162 (203)
T TIGR02137 112 HKLEIDDSDRVVGYQL--RQKDPKRQS------------------VIAFKS--LYYRVIAAGDSYNDTTMLSE 162 (203)
T ss_pred eeeEEecCCeeECeee--cCcchHHHH------------------HHHHHh--hCCCEEEEeCCHHHHHHHHh
Confidence 9999975587776421 111122221 111221 12379999999999999983
No 19
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.56 E-value=2.6e-14 Score=128.92 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=87.9
Q ss_pred cCCCHHHHHHHHHhc-----CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCC
Q 018557 162 GGLTYDAIKKSVSNA-----LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKD 236 (354)
Q Consensus 162 ~glt~~~i~e~v~~~-----~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~d 236 (354)
.|++.+++.+++++. ...++||+.++++.++++|++++|+|+|...+++.+++.. |. + +++++++.++++
T Consensus 65 ~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l-g~--~--~~~~~~l~~~~~ 139 (202)
T TIGR01490 65 AGLLEEDVRAIVEEFVNQKIESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL-GI--D--NAIGTRLEESED 139 (202)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc-CC--c--ceEecceEEcCC
Confidence 589999988776542 2468999999999999999999999999999999998865 64 2 699999999778
Q ss_pred CcEEecC-CCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccce
Q 018557 237 GHLVSFK-GKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETR 307 (354)
Q Consensus 237 G~l~gf~-~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~v 307 (354)
|.++|.. ++......|..... ++ +..+ .+ ....++++|||.+|+.|+. .++..
T Consensus 140 g~~~g~~~~~~~~g~~K~~~l~-------~~-------~~~~-~~-~~~~~~~~gDs~~D~~~~~--~a~~~ 193 (202)
T TIGR01490 140 GIYTGNIDGNNCKGEGKVHALA-------EL-------LAEE-QI-DLKDSYAYGDSISDLPLLS--LVGHP 193 (202)
T ss_pred CEEeCCccCCCCCChHHHHHHH-------HH-------HHHc-CC-CHHHcEeeeCCcccHHHHH--hCCCc
Confidence 8887743 33333223322111 00 0000 01 2357899999999999998 44443
No 20
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.42 E-value=5.9e-13 Score=118.33 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=65.7
Q ss_pred ccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcE-EecCCCccccCCCCccccccc
Q 018557 182 DGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHL-VSFKGKTIHSLNKNEHALDMA 260 (354)
Q Consensus 182 pG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l-~gf~~~~ih~~nK~~~~l~~~ 260 (354)
|++.++++.++++|++++|+|||...+|+.+++.. +. +..+|++|.+ ++++|.. .+.--+..+. +|.....
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~-~i--~~~~v~~~~~-~~~~~~~~~~~~~~~~~~-~K~~~l~--- 163 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL-GI--DDDNVIGNEL-FDNGGGIFTGRITGSNCG-GKAEALK--- 163 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT-TS--SEGGEEEEEE-ECTTCCEEEEEEEEEEES-HHHHHHH---
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CC--CceEEEEEee-eecccceeeeeECCCCCC-cHHHHHH---
Confidence 44449999999999999999999999999999865 64 6567999999 8765332 2211011111 2332211
Q ss_pred ccccccCCCCCCCC--ccccccCCCceEEEEcCCCCChhccc
Q 018557 261 APLHEHFGDTDGPN--YDNASVKNRTNVLLLGDHIGDLGMSD 300 (354)
Q Consensus 261 ~~~~~~~~~~~~~~--~~~~~l~~r~~vI~iGDg~~Dl~ma~ 300 (354)
.+ ..... ....+++++|||.+|+.|++
T Consensus 164 ------------~~~~~~~~~-~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 164 ------------ELYIRDEED-IDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp ------------HHHHHHHHT-HTCCEEEEEESSGGGHHHHH
T ss_pred ------------HHHHHhhcC-CCCCeEEEEECCHHHHHHhC
Confidence 01 00001 24679999999999999974
No 21
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.34 E-value=1.6e-11 Score=113.19 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=76.9
Q ss_pred cCCCHHHHHHHHHhc------CCcccccHHHHHH-HHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEc
Q 018557 162 GGLTYDAIKKSVSNA------LIAFRDGVVKLFE-FLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFD 234 (354)
Q Consensus 162 ~glt~~~i~e~v~~~------~i~LrpG~~efl~-~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd 234 (354)
.|.+.+++.+..+.. ...++||+.+.++ .++++|++++|+|++...+++++.+.. +. ....+++++.+.+.
T Consensus 71 ~g~~~~~l~~~~~~f~~~~~~~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~-~~-~~~~~~i~t~le~~ 148 (210)
T TIGR01545 71 FGHREAHLQDLEADFVAAFRDKVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS-NF-IHRLNLIASQIERG 148 (210)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc-cc-cccCcEEEEEeEEe
Confidence 577777766543221 2468999999995 889999999999999999999999764 22 12358999999985
Q ss_pred CCCcEEecCCCccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhccc
Q 018557 235 KDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSD 300 (354)
Q Consensus 235 ~dG~l~gf~~~~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~ 300 (354)
+.|.+. |+..+.-.|-. .+++++| .+.....+-|||.||+.|..
T Consensus 149 ~gg~~~---g~~c~g~~Kv~-------rl~~~~~------------~~~~~~~aYsDS~~D~pmL~ 192 (210)
T TIGR01545 149 NGGWVL---PLRCLGHEKVA-------QLEQKIG------------SPLKLYSGYSDSKQDNPLLA 192 (210)
T ss_pred CCceEc---CccCCChHHHH-------HHHHHhC------------CChhheEEecCCcccHHHHH
Confidence 445543 33222222211 1122221 02245678999999999987
No 22
>PRK11590 hypothetical protein; Provisional
Probab=99.32 E-value=3.1e-11 Score=110.90 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=72.1
Q ss_pred CcccccHHHHH-HHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccc
Q 018557 178 IAFRDGVVKLF-EFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHA 256 (354)
Q Consensus 178 i~LrpG~~efl-~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~ 256 (354)
+.+.||+.+++ +.+++.|++++|+|++...+++++++.. +. ....+++|+++.+.-.|++.| +..+...|-.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l-~~-~~~~~~i~t~l~~~~tg~~~g---~~c~g~~K~~-- 166 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT-PW-LPRVNLIASQMQRRYGGWVLT---LRCLGHEKVA-- 166 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc-cc-cccCceEEEEEEEEEccEECC---ccCCChHHHH--
Confidence 57799999999 6799999999999999999999999976 42 123489999998754455433 3333222221
Q ss_pred ccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceee
Q 018557 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRIS 309 (354)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vla 309 (354)
.+++++|. ......+-|||.||+.|.. -+++-++
T Consensus 167 -----~l~~~~~~------------~~~~~~aY~Ds~~D~pmL~--~a~~~~~ 200 (211)
T PRK11590 167 -----QLERKIGT------------PLRLYSGYSDSKQDNPLLY--FCQHRWR 200 (211)
T ss_pred -----HHHHHhCC------------CcceEEEecCCcccHHHHH--hCCCCEE
Confidence 12222211 2235678999999999987 3444333
No 23
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.06 E-value=9.6e-10 Score=100.37 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+.+.||+.++|++|+++|++++|+|++....++.+|+.. |.
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~-gl 121 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT-GL 121 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CC
Confidence 4679999999999999999999999999999999999876 54
No 24
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.05 E-value=2.3e-09 Score=98.03 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=38.7
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
...+.||+.+++++|+++|++++|+|++....++.+|++. +.
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~-~l 126 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL-GW 126 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh-hh
Confidence 4689999999999999999999999999999999999976 53
No 25
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.00 E-value=2.2e-09 Score=97.31 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
...+.||+.++|+.|+++|++++|+|++....++.+|++. +.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l 124 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL-GL 124 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-Cc
Confidence 4689999999999999999999999999999999999976 54
No 26
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.98 E-value=2.8e-09 Score=96.72 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=38.9
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.+.||+.+++++|+++|++++|+|++....++..|+.. +.
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~-~l 114 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL-GL 114 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc-CC
Confidence 35899999999999999999999999999999999998875 54
No 27
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.98 E-value=1.7e-09 Score=95.72 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=35.6
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.+.||+.++++.|+++|++++|+|++ ..++.+|++. +.
T Consensus 85 ~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~-~l 125 (185)
T TIGR02009 85 TGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL-GL 125 (185)
T ss_pred cCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc-Ch
Confidence 35789999999999999999999999998 5678888865 53
No 28
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.97 E-value=1.1e-08 Score=93.41 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=38.3
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
...+.||+.++++.|++.|++++|+|++....++.++++. +.
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l 132 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL-GI 132 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CC
Confidence 4679999999999999999999999999999999999876 53
No 29
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.96 E-value=5.4e-09 Score=96.08 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=38.6
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
...+.||+.++++.|+++|++++|+|++....++.+++.. +.
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l 131 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF-DL 131 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC-cc
Confidence 5789999999999999999999999999999999999876 53
No 30
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.95 E-value=4.9e-09 Score=96.87 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=38.5
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.||+.++|+.|+++|+++.|+|+.....++.+|+++ |.
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~-gl 128 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL-GL 128 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh-CC
Confidence 579999999999999999999999999999999999986 65
No 31
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.95 E-value=1.4e-08 Score=97.41 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=38.8
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+.+.||+.++|++|+++|++++|+|++....++.+|++. |.
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~-gl 181 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ-GL 181 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CC
Confidence 4688999999999999999999999999999999999876 54
No 32
>PRK11587 putative phosphatase; Provisional
Probab=98.91 E-value=7.5e-09 Score=95.06 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=36.1
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
..+.+.||+.++|++|+++|++++|+|++....++..++..
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~ 120 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA 120 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc
Confidence 35789999999999999999999999999887777777654
No 33
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.90 E-value=7.8e-09 Score=105.71 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=39.2
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
...++.||+.++|++|+++|++++|+|++....++..|+.. +.
T Consensus 327 ~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~-~l 369 (459)
T PRK06698 327 GKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY-DL 369 (459)
T ss_pred cCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC-Cc
Confidence 35789999999999999999999999999999999999875 53
No 34
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.90 E-value=1.1e-08 Score=97.38 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=39.1
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
....+.||+.++|+.|+++|++++|+|++....++.+|++. |.
T Consensus 106 ~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~-gl 148 (260)
T PLN03243 106 GLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV-GM 148 (260)
T ss_pred cCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc-CC
Confidence 35789999999999999999999999999999999999876 54
No 35
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.89 E-value=2.9e-09 Score=87.45 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=37.8
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
...+.+|+.++++.|+++|++++|+|++....++.++++.
T Consensus 22 ~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~ 61 (139)
T cd01427 22 ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL 61 (139)
T ss_pred cCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc
Confidence 5789999999999999999999999999999999999886
No 36
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.88 E-value=1.1e-08 Score=94.84 Aligned_cols=42 Identities=19% Similarity=0.042 Sum_probs=38.0
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
...+.||+.+++++|+++|++++|+|++....++.+|++. +.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~-~l 134 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL-GW 134 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-Cc
Confidence 4789999999999999999999999999999998888876 53
No 37
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.88 E-value=1.1e-08 Score=94.86 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=38.5
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.+.||+.++++.|+++|++++|+|++....++..|+.. +.
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~-~l 132 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT-GL 132 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC-Cc
Confidence 35789999999999999999999999999999999988865 53
No 38
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=2.3e-08 Score=94.03 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=39.5
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.+.||+.++|++|+++|++++|+|++....++..|++. +.
T Consensus 105 ~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~-gl 147 (248)
T PLN02770 105 EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL-GL 147 (248)
T ss_pred hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc-CC
Confidence 35889999999999999999999999999999999999986 54
No 39
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.85 E-value=1.8e-08 Score=91.02 Aligned_cols=40 Identities=8% Similarity=-0.097 Sum_probs=35.2
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+.++..++|+.|+++|++++|+|++....++.+|+.. |.
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~-gl 145 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH-GL 145 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc-Cc
Confidence 34556699999999999999999999999999999987 54
No 40
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=98.83 E-value=1.1e-08 Score=90.59 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=31.7
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.||+.++|+.|+++|++++|+|++.. ...+|+.. +.
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~-~l 124 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKL-GL 124 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhc-Cc
Confidence 57899999999999999999999998753 34566655 53
No 41
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.83 E-value=2.1e-08 Score=96.62 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=40.0
Q ss_pred HHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 170 KKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 170 ~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.+.+....+.+.||+.++|++|+++|++++|+|++....++.+|+..
T Consensus 135 ~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~ 181 (286)
T PLN02779 135 KELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTL 181 (286)
T ss_pred HHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 33333334789999999999999999999999999999999998865
No 42
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.80 E-value=5.9e-08 Score=91.03 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=37.8
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.+.+.||+.++|++|+++|++++|+|++....++.+|++.
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~ 136 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA 136 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999876
No 43
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.80 E-value=2.2e-07 Score=88.10 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=37.4
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.+.+.||+.++|+.|+++|++++|+|++....++.+|+..
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~ 138 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA 138 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999875
No 44
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.79 E-value=3.9e-08 Score=88.60 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+.+.||+.++++.|+++|++++|+|+|....++..|++. |.
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~-gl 131 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA-GL 131 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC-CC
Confidence 5789999999999999999999999999999999999876 54
No 45
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.78 E-value=3e-08 Score=94.78 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=36.4
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
..+.||+.++++.|+++|++++|+|++....++.+|++.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~ 138 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM 138 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc
Confidence 578999999999999999999999999999999998875
No 46
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.78 E-value=6.3e-08 Score=88.38 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=37.8
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+.+.||+.++|++|+++|++++|+|++....+...|++. |.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~-~l 133 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL-GV 133 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC-Ch
Confidence 4789999999999999999999999999988888888875 53
No 47
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.76 E-value=7.4e-08 Score=86.97 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=33.9
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.||+.++|++|+++|++++|+|++... +...|++. +.
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~-~l 143 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEAL-GL 143 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHC-Cc
Confidence 478899999999999999999999998775 46777765 53
No 48
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.74 E-value=7.1e-08 Score=96.53 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=38.8
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
...+.||+.++|++|+++|++++|+|++....++.+|++. |.
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l-gL 255 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI-GI 255 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CC
Confidence 4688999999999999999999999999999999999986 54
No 49
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.70 E-value=2e-07 Score=96.35 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=78.2
Q ss_pred cCCCHHHHHHHHH----hc-CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCC
Q 018557 162 GGLTYDAIKKSVS----NA-LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKD 236 (354)
Q Consensus 162 ~glt~~~i~e~v~----~~-~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~d 236 (354)
.|++.+++++..+ +. .-.+++...+.+ +++| ..+|+||+.+.++++++++++|.+ .|++.+++.+.+
T Consensus 88 ~G~~~~el~~~~r~~l~~f~~~~l~~~a~~~~---~~~g-~~vvVSASp~~~Vepfa~~~LGid----~VIgTeLev~~~ 159 (497)
T PLN02177 88 AGLKIRDIELVSRSVLPKFYAEDVHPETWRVF---NSFG-KRYIITASPRIMVEPFVKTFLGAD----KVLGTELEVSKS 159 (497)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHH---HhCC-CEEEEECCcHHHHHHHHHHcCCCC----EEEecccEECcC
Confidence 5888888865542 10 113666655544 4566 459999999999999998866752 699999999778
Q ss_pred CcEEecC-CC-ccccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeec
Q 018557 237 GHLVSFK-GK-TIHSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGF 312 (354)
Q Consensus 237 G~l~gf~-~~-~ih~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGf 312 (354)
|.++|.- |+ +.+.-.|-... ++.+| .....+..|||.+|+.|.. -++..+.++.
T Consensus 160 G~~TG~i~g~~~c~Ge~Kv~rl-------~~~~g-------------~~~~~~aYgDS~sD~plL~--~a~e~y~V~~ 215 (497)
T PLN02177 160 GRATGFMKKPGVLVGDHKRDAV-------LKEFG-------------DALPDLGLGDRETDHDFMS--ICKEGYMVPR 215 (497)
T ss_pred CEEeeeecCCCCCccHHHHHHH-------HHHhC-------------CCCceEEEECCccHHHHHH--hCCccEEeCC
Confidence 9999853 43 11211122111 10111 1112279999999999987 5777777666
No 50
>PRK09449 dUMP phosphatase; Provisional
Probab=98.67 E-value=1.3e-07 Score=86.71 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=36.4
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
...+.||+.++|+.|+ +|++++|+|++....++..|++. |.
T Consensus 93 ~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~-~l 133 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT-GL 133 (224)
T ss_pred cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC-Ch
Confidence 4679999999999999 57999999999999999998876 53
No 51
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.65 E-value=6.8e-08 Score=87.49 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHH
Q 018557 164 LTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQ 215 (354)
Q Consensus 164 lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~ 215 (354)
.+.+++.+...+....+.||+.++++.|+++|++++|+|++....++..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~ 120 (199)
T PRK09456 69 LSYEQFAHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEE 120 (199)
T ss_pred CCHHHHHHHHHHHHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhh
Confidence 3445555544433357899999999999999999999999998777766554
No 52
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.64 E-value=9.3e-08 Score=87.05 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=37.4
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
...+.||+.++++.|+++ ++++|+|++....++..|++. +.
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~-~l 135 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS-GL 135 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC-Cc
Confidence 468999999999999999 999999999999999999876 54
No 53
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.62 E-value=1.6e-07 Score=80.83 Aligned_cols=43 Identities=33% Similarity=0.435 Sum_probs=39.8
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
....+.||+.++|+.|+++|++++|+|++....++..|++. |.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~-~~ 116 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL-GL 116 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT-TH
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCccccccccccc-cc
Confidence 57899999999999999999999999999999999999987 54
No 54
>PLN02940 riboflavin kinase
Probab=98.59 E-value=3.5e-07 Score=91.74 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=37.2
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVH 218 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g 218 (354)
.+.+.||+.++|+.|+++|++++|+|++....++..|++..+
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~g 132 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQG 132 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccC
Confidence 578899999999999999999999999999999888874334
No 55
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.58 E-value=2.8e-07 Score=81.95 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=34.0
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+.+.|| .++|+.|++. ++++|+|++....++..|++. +.
T Consensus 86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~-~l 125 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHL-GL 125 (188)
T ss_pred cCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC-Cc
Confidence 4667787 5899999876 899999999999999999986 54
No 56
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.57 E-value=1.6e-07 Score=80.96 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=36.3
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.....||+.++++.|+++|++++|+|++....+...++..
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~ 101 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH 101 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH
Confidence 4567799999999999999999999999999999988874
No 57
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.57 E-value=4.4e-07 Score=85.50 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=34.8
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecC----hHHHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAG----LADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG----~~~~Ie~vL~~~~g~ 219 (354)
..+.+|+.|||++|+++|++++|+|+. ....++.+++.. |+
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l-Gi 157 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF-HI 157 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh-CC
Confidence 456677999999999999999999997 677888887765 64
No 58
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.51 E-value=6.4e-07 Score=82.04 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=33.6
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.+.+.||+.++++.| +++++|+|++....++..|+..
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~ 122 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT 122 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc
Confidence 578999999999998 4999999999999999999876
No 59
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.48 E-value=1.2e-06 Score=78.00 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=41.4
Q ss_pred cCCCHHHHHHHHHh----cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 162 GGLTYDAIKKSVSN----ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 162 ~glt~~~i~e~v~~----~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+.+.+++.+.+.+ ..+.+.||+.++|+.|+ .+++|+|++....+...|++. |.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~-gl 120 (184)
T TIGR01993 63 HEIDADEYLRYVHGRLPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL-GI 120 (184)
T ss_pred hCCCHHHHHHHHhccCCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc-Cc
Confidence 34555555555543 14668899999999997 489999999999999999876 54
No 60
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.47 E-value=1e-06 Score=77.34 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=34.0
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
+++.||+.++++.|+++|++++|+|++.... ..++.+. |.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~-~l 123 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQEL-GL 123 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhc-CC
Confidence 6899999999999999999999999999877 5555433 53
No 61
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.32 E-value=2e-06 Score=96.35 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=36.7
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+.||+.++|++|+++|++++|+|++....++.+|++. +.
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~-gl 200 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAA-GL 200 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc-CC
Confidence 47899999999999999999999999999999999876 54
No 62
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.29 E-value=3.3e-06 Score=76.79 Aligned_cols=31 Identities=6% Similarity=0.155 Sum_probs=28.3
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecChH
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~~ 206 (354)
..+.+.||+.++++.|+++|++++|+|++..
T Consensus 91 ~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~ 121 (211)
T TIGR02247 91 ENTKLRPSMMAAIKTLRAKGFKTACITNNFP 121 (211)
T ss_pred cccccChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3678999999999999999999999999865
No 63
>PRK08238 hypothetical protein; Validated
Probab=98.26 E-value=1.9e-06 Score=88.94 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=64.7
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccc
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHA 256 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~ 256 (354)
.++++||+.++++.++++|++++|+|++...+++.++++. |. ++ .|++..... ...+..|.+..
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l-Gl-Fd--~Vigsd~~~------------~~kg~~K~~~l 133 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL-GL-FD--GVFASDGTT------------NLKGAAKAAAL 133 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-CC-CC--EEEeCCCcc------------ccCCchHHHHH
Confidence 4678999999999999999999999999999999998876 64 33 555543210 00011121110
Q ss_pred ccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeee
Q 018557 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVG 311 (354)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiG 311 (354)
.+. + ....++|+||+.+|+.|.+ .++..+.++
T Consensus 134 -----------------~~~---l-~~~~~~yvGDS~~Dlp~~~--~A~~av~Vn 165 (479)
T PRK08238 134 -----------------VEA---F-GERGFDYAGNSAADLPVWA--AARRAIVVG 165 (479)
T ss_pred -----------------HHH---h-CccCeeEecCCHHHHHHHH--hCCCeEEEC
Confidence 011 1 1234789999999999998 455555544
No 64
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.25 E-value=1.3e-05 Score=74.48 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=39.6
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+++.||+.++++.|+++|++++++|++....++.+|+.. |.
T Consensus 83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~-gl 125 (221)
T COG0637 83 EGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL-GL 125 (221)
T ss_pred cCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc-cC
Confidence 36899999999999999999999999999999999999876 53
No 65
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=98.21 E-value=8e-06 Score=76.27 Aligned_cols=51 Identities=14% Similarity=0.304 Sum_probs=36.1
Q ss_pred HHHHHhcCCCHHHHH-------HHHHh--cCCcccccHHHHHHHHHhCCCCEEEEecChHH
Q 018557 156 HGLLIEGGLTYDAIK-------KSVSN--ALIAFRDGVVKLFEFLEERDIPVLIFSAGLAD 207 (354)
Q Consensus 156 ~~ll~~~glt~~~i~-------e~v~~--~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~ 207 (354)
..++...|++.+... +.... ..+.+.||+.++|+.|+++ ++++|+|+|...
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~ 140 (238)
T PRK10748 81 EQAMLDAGLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ 140 (238)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch
Confidence 345666777754421 11211 2478889999999999986 999999999875
No 66
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.20 E-value=1.7e-06 Score=76.13 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=30.6
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+.+.||+.++|+ +++|+|+|....++..|++. +.
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~-~l 122 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQA-GL 122 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC-CC
Confidence 5789999999998 48999999999999999876 54
No 67
>PLN02811 hydrolase
Probab=98.10 E-value=1.5e-05 Score=73.41 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=30.5
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHH
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEE 211 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~ 211 (354)
...+.||+.++++.|+++|++++|+|++....+..
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~ 110 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDL 110 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHH
Confidence 47889999999999999999999999998754443
No 68
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.02 E-value=3.6e-05 Score=72.61 Aligned_cols=41 Identities=7% Similarity=0.102 Sum_probs=33.9
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEec----ChHHHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSA----GLADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~Sa----G~~~~Ie~vL~~~~g~ 219 (354)
..+.||+.++++.|+++|++++++|+ .....++.+++.+ |.
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~-gi 157 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDF-HI 157 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHc-CC
Confidence 57889999999999999999999998 4566777776644 64
No 69
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.93 E-value=2.1e-05 Score=82.81 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=76.3
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l 257 (354)
.+++||+.++++.|+++|++++|+|++....++.++++. |. +++++. .+.+|.+.
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l-gi-----~~~~~~-----------------~p~~K~~~-- 458 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL-GI-----NVRAEV-----------------LPDDKAAL-- 458 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc-CC-----cEEccC-----------------ChHHHHHH--
Confidence 578999999999999999999999999999999999876 64 233321 01122211
Q ss_pred cccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCC
Q 018557 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAP 337 (354)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t 337 (354)
++.++ ....+++|+|||.||..+++ .++.-++.|+-.+ . -...-|+++.++.-
T Consensus 459 ----------------v~~l~--~~~~~v~~VGDg~nD~~al~--~A~vgia~g~g~~-~------a~~~Advvl~~~~l 511 (562)
T TIGR01511 459 ----------------IKELQ--EKGRVVAMVGDGINDAPALA--QADVGIAIGAGTD-V------AIEAADVVLMRNDL 511 (562)
T ss_pred ----------------HHHHH--HcCCEEEEEeCCCccHHHHh--hCCEEEEeCCcCH-H------HHhhCCEEEeCCCH
Confidence 11222 13468999999999999998 6777677775321 1 13456999887643
No 70
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.92 E-value=5e-05 Score=68.36 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=28.6
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHH
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQ 215 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~ 215 (354)
...+.||+.++|+.|+++ .+++++|++....-...++.
T Consensus 72 ~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~ 109 (197)
T PHA02597 72 YLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQ 109 (197)
T ss_pred hccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhh
Confidence 367999999999999997 57888888766444334443
No 71
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.88 E-value=1.7e-05 Score=82.94 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=79.4
Q ss_pred CcccccHHHHHHHHHhCCC-CEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccc
Q 018557 178 IAFRDGVVKLFEFLEERDI-PVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHA 256 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gi-pv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~ 256 (354)
.+++||+.+.++.|+++|+ ++.|+|+.....++.++++. |. + +++++-. +.+|..
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l-gi--~--~~f~~~~-----------------p~~K~~-- 416 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL-GI--D--EVHAELL-----------------PEDKLE-- 416 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc-CC--h--hhhhccC-----------------cHHHHH--
Confidence 5789999999999999999 99999999999999999987 64 2 2332211 112221
Q ss_pred ccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCC
Q 018557 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDA 336 (354)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~ 336 (354)
.++.++ ....+++|+|||.+|+.+++ .++..++.|+-..... ....|+++.+|.
T Consensus 417 ----------------~i~~l~--~~~~~v~~vGDg~nD~~al~--~A~vgia~g~~~~~~~------~~~ad~vl~~~~ 470 (536)
T TIGR01512 417 ----------------IVKELR--EKYGPVAMVGDGINDAPALA--AADVGIAMGASGSDVA------IETADVVLLNDD 470 (536)
T ss_pred ----------------HHHHHH--hcCCEEEEEeCCHHHHHHHH--hCCEEEEeCCCccHHH------HHhCCEEEECCC
Confidence 111222 12468999999999999998 7777777776332222 335699987665
Q ss_pred ChHHH
Q 018557 337 PMWEV 341 (354)
Q Consensus 337 t~~~~ 341 (354)
--.++
T Consensus 471 l~~l~ 475 (536)
T TIGR01512 471 LSRLP 475 (536)
T ss_pred HHHHH
Confidence 54444
No 72
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.86 E-value=9.6e-06 Score=72.80 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=60.4
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l 257 (354)
.+++||+.++++.|++.|+++.|+|+........+.++. |+ +...|+++.. +-+ ..|. ..
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-gi--~~~~v~a~~~---------~kP------~~k~--~~ 185 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-GI--FDSIVFARVI---------GKP------EPKI--FL 185 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-TS--CSEEEEESHE---------TTT------HHHH--HH
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccc-cc--cccccccccc---------ccc------cchh--HH
Confidence 578999999999999999999999999999999998876 75 2223555433 000 0110 00
Q ss_pred cccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhccc
Q 018557 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSD 300 (354)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~ 300 (354)
. .++.++ . ....|+++|||.||+.|++
T Consensus 186 ~--------------~i~~l~-~-~~~~v~~vGDg~nD~~al~ 212 (215)
T PF00702_consen 186 R--------------IIKELQ-V-KPGEVAMVGDGVNDAPALK 212 (215)
T ss_dssp H--------------HHHHHT-C-TGGGEEEEESSGGHHHHHH
T ss_pred H--------------HHHHHh-c-CCCEEEEEccCHHHHHHHH
Confidence 0 111111 1 3458999999999999987
No 73
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.76 E-value=0.00017 Score=67.22 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=35.7
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
...+.||+.++|+.|+++|++++|+|+|.....+.+++..
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~ 132 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHS 132 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence 3579999999999999999999999999988888877653
No 74
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.71 E-value=0.00019 Score=73.91 Aligned_cols=139 Identities=12% Similarity=0.174 Sum_probs=83.0
Q ss_pred cCCCcEEEEEecccccccccccCccccchHHHhhc---cChhHHHHHHHHHHhhCCCCCCCC--CCHHHHHHHHHHHHHH
Q 018557 80 AGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQ---GNPEYDAKRQALYEYYHPLEFSPT--VPLEEKTKLMEEWWGK 154 (354)
Q Consensus 80 ~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~---~~~e~~~~~~~L~~~y~p~E~d~~--is~~Ek~~~m~ew~~~ 154 (354)
.|-.+--|++|||||||+. .+++-.+-. .+....+-+ .|.-.| |.-.--. -+-+.+++.|.-
T Consensus 4 ~~~~~~~~~fD~DGTLlrs-------~ssFpyFmlva~eagG~~R~~-~LL~l~-P~l~ll~~~~~~~~~lK~mi~---- 70 (498)
T PLN02499 4 SGTTSYSVVSELEGTLLKD-------ADPFSYFMLVAFEASGLIRFA-LLLFLW-PIIRLLDMLGMGDAALKLMIF---- 70 (498)
T ss_pred CCcccceEEEecccceecC-------CCccHHHHHHHHHhccHHHHH-HHHHHh-HHHHHHHhcCCchHHHHHHHH----
Confidence 3555667999999999992 334333333 111111211 111111 2110000 022344554432
Q ss_pred HHHHHHhcCCCHHHHHHHHHhc--C---CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEee
Q 018557 155 THGLLIEGGLTYDAIKKSVSNA--L---IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSN 229 (354)
Q Consensus 155 ~~~ll~~~glt~~~i~e~v~~~--~---i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN 229 (354)
....|++.+++++..+.- + -.+++. .++..+..| .++|+|++.+.++|+.++.++|.+ .|++-
T Consensus 71 ----v~f~Gl~~~die~vaRavlpkf~~~dv~~e---~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D----~VvGT 138 (498)
T PLN02499 71 ----VATAGVHESEIESVARAVLPKFYMDDVDME---AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRAD----EVIGS 138 (498)
T ss_pred ----HHhCCCCHHHHHHHHHHHhhHHHHhhCCHH---HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCc----eEEee
Confidence 124789999887754421 0 123333 445566778 999999999999999999987853 68899
Q ss_pred eeEEcCCCcEEecC
Q 018557 230 RMVFDKDGHLVSFK 243 (354)
Q Consensus 230 ~~~fd~dG~l~gf~ 243 (354)
++.+.+.|..+|+-
T Consensus 139 EL~v~~~G~~TG~~ 152 (498)
T PLN02499 139 ELVVNRFGFATGFI 152 (498)
T ss_pred eEEEeeccEEEEEE
Confidence 99998559999864
No 75
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.68 E-value=6.2e-05 Score=81.05 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=87.4
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l 257 (354)
-++||+.++.++.|++.|+++.++||=.....+.+-++. |+. +++|+-+- -+|.+
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~l-GId----~v~AellP-----------------edK~~--- 590 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKEL-GID----EVRAELLP-----------------EDKAE--- 590 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-ChH----hheccCCc-----------------HHHHH---
Confidence 589999999999999999999999999999999998876 752 45554322 12322
Q ss_pred cccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCC
Q 018557 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAP 337 (354)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t 337 (354)
.++.++ ..+..|.++|||+||..+.. .+|+-+++|--.| +- .+.-|||+++|.-
T Consensus 591 ---------------~V~~l~--~~g~~VamVGDGINDAPALA--~AdVGiAmG~GtD-vA------~eaADvvL~~~dL 644 (713)
T COG2217 591 ---------------IVRELQ--AEGRKVAMVGDGINDAPALA--AADVGIAMGSGTD-VA------IEAADVVLMRDDL 644 (713)
T ss_pred ---------------HHHHHH--hcCCEEEEEeCCchhHHHHh--hcCeeEeecCCcH-HH------HHhCCEEEecCCH
Confidence 122233 24578999999999999987 7888899998433 22 4567999999987
Q ss_pred hHHHHHH
Q 018557 338 MWEVVEL 344 (354)
Q Consensus 338 ~~~~~~l 344 (354)
..++..+
T Consensus 645 ~~v~~ai 651 (713)
T COG2217 645 SAVPEAI 651 (713)
T ss_pred HHHHHHH
Confidence 7777644
No 76
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.66 E-value=8.2e-05 Score=78.13 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=76.8
Q ss_pred CcccccHHHHHHHHHhCC-CCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccc
Q 018557 178 IAFRDGVVKLFEFLEERD-IPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHA 256 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~g-ipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~ 256 (354)
.+++||+.+++++|+++| +++.|+|+.....++.++++. |. + +++++- .+.+|.+
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l-gi--~--~~f~~~-----------------~p~~K~~-- 438 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL-GI--D--EVHAEL-----------------LPEDKLA-- 438 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh-CC--C--eeeccC-----------------CHHHHHH--
Confidence 679999999999999999 999999999999999999987 64 1 333321 0112221
Q ss_pred ccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCC
Q 018557 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDA 336 (354)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~ 336 (354)
.++.++. ...+++|+|||.+|+.+++ .++..++.|.- .... ...-|+++.+|.
T Consensus 439 ----------------~v~~l~~--~~~~v~~vGDg~nD~~al~--~A~vgia~g~~-~~~~------~~~Ad~vi~~~~ 491 (556)
T TIGR01525 439 ----------------IVKELQE--EGGVVAMVGDGINDAPALA--AADVGIAMGAG-SDVA------IEAADIVLLNDD 491 (556)
T ss_pred ----------------HHHHHHH--cCCEEEEEECChhHHHHHh--hCCEeEEeCCC-CHHH------HHhCCEEEeCCC
Confidence 1112221 3458999999999999998 67755665521 1111 234688877755
Q ss_pred ChHHHH
Q 018557 337 PMWEVV 342 (354)
Q Consensus 337 t~~~~~ 342 (354)
--.++.
T Consensus 492 ~~~l~~ 497 (556)
T TIGR01525 492 LSSLPT 497 (556)
T ss_pred HHHHHH
Confidence 444433
No 77
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.65 E-value=5.6e-05 Score=70.46 Aligned_cols=125 Identities=14% Similarity=0.193 Sum_probs=82.2
Q ss_pred EEEecccccccccccCccccchHHHhhccChhHHHHHHHH--HHhhCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHH
Q 018557 87 VIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQAL--YEYYHPLEF-----SPTVPLEEKTKLMEEWWGKTHGLL 159 (354)
Q Consensus 87 Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L--~~~y~p~E~-----d~~is~~Ek~~~m~ew~~~~~~ll 159 (354)
+++|..|-++- .|-.+.+..++-|..++-+..+ |+.|...|+ .+--|+.--+| .|
T Consensus 3 fvtD~EGP~sl-------~D~A~E~~a~~~pngrrfF~~~SeyDD~la~E~rReGYeaG~TLkLivP-----------FL 64 (315)
T COG4030 3 FVTDWEGPWSL-------TDFALELCAAVFPNGRRFFSNLSEYDDYLAYEVRREGYEAGYTLKLIVP-----------FL 64 (315)
T ss_pred ccccCCCCCcc-------chhHHHHHHHHcCCHHHHHHhhhhhhhHHHHHHhccCCCCCcchhhHHH-----------HH
Confidence 78999999987 4555555555544333222211 222222221 11122222222 34
Q ss_pred HhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEc
Q 018557 160 IEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFD 234 (354)
Q Consensus 160 ~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd 234 (354)
..+|+|.+++.++-+. ...|-||+.|.++.|.++ ++-+|+|-++..+++..-.. .| +|.-++++-.|.+|
T Consensus 65 ~ahGVt~~dlrr~sE~-sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~-ig--~Prg~~~~Te~~lD 134 (315)
T COG4030 65 AAHGVTNRDLRRISEL-SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASM-IG--VPRGELHGTEVDLD 134 (315)
T ss_pred HHhcCcHHHHHHHHHh-hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHh-cC--CCccccccccccCc
Confidence 5689999999998664 589999999999999887 56678999999999887654 46 46667888888887
No 78
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.64 E-value=9.1e-05 Score=79.40 Aligned_cols=114 Identities=11% Similarity=0.136 Sum_probs=80.7
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccccc
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALD 258 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l~ 258 (354)
++|||+++.++.|++.|+++.++|+........+.++. |. + +++++- .+-+|.+.
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~l-GI--~--~v~a~~-----------------~PedK~~~--- 500 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEA-GV--D--DFIAEA-----------------TPEDKIAL--- 500 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CC--C--EEEcCC-----------------CHHHHHHH---
Confidence 89999999999999999999999999999999988876 75 2 344321 11123221
Q ss_pred ccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCCh
Q 018557 259 MAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPM 338 (354)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~ 338 (354)
++.++ ..+..|.++|||.||..+.. .+|.-++.|--.+-. ++.-|||+.+|.--
T Consensus 501 ---------------v~~lq--~~g~~VamvGDG~NDapAL~--~AdvGiAm~~gt~~a-------keaadivLldd~~s 554 (675)
T TIGR01497 501 ---------------IRQEQ--AEGKLVAMTGDGTNDAPALA--QADVGVAMNSGTQAA-------KEAANMVDLDSDPT 554 (675)
T ss_pred ---------------HHHHH--HcCCeEEEECCCcchHHHHH--hCCEeEEeCCCCHHH-------HHhCCEEECCCCHH
Confidence 12222 13457999999999999998 788888877322222 34459999988765
Q ss_pred HHHHH
Q 018557 339 WEVVE 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
.++..
T Consensus 555 ~Iv~a 559 (675)
T TIGR01497 555 KLIEV 559 (675)
T ss_pred HHHHH
Confidence 55553
No 79
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.57 E-value=0.00014 Score=78.07 Aligned_cols=115 Identities=11% Similarity=0.119 Sum_probs=82.0
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccccc
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALD 258 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l~ 258 (354)
++|||++|.++.|++.||++.++||-.......+-++. |. + +++|+- .+-+|-+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~el-GI--d--~v~A~~-----------------~PedK~~---- 498 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA-GV--D--DFLAEA-----------------TPEDKLA---- 498 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CC--c--EEEccC-----------------CHHHHHH----
Confidence 67999999999999999999999999998998887776 75 2 333321 1112221
Q ss_pred ccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCCh
Q 018557 259 MAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPM 338 (354)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~ 338 (354)
.++.++ ..+..|.++|||.||..+.. .+|+-++.|--. .+- +++-|||+.+|.--
T Consensus 499 --------------iV~~lQ--~~G~~VaMtGDGvNDAPALa--~ADVGIAMgsGT-dvA------keAADiVLldd~~s 553 (679)
T PRK01122 499 --------------LIRQEQ--AEGRLVAMTGDGTNDAPALA--QADVGVAMNSGT-QAA------KEAGNMVDLDSNPT 553 (679)
T ss_pred --------------HHHHHH--HcCCeEEEECCCcchHHHHH--hCCEeEEeCCCC-HHH------HHhCCEEEeCCCHH
Confidence 122233 23567999999999999988 789889988322 222 56779999988755
Q ss_pred HHHHHH
Q 018557 339 WEVVEL 344 (354)
Q Consensus 339 ~~~~~l 344 (354)
.++..+
T Consensus 554 ~Iv~av 559 (679)
T PRK01122 554 KLIEVV 559 (679)
T ss_pred HHHHHH
Confidence 555433
No 80
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.55 E-value=0.00015 Score=80.22 Aligned_cols=141 Identities=15% Similarity=0.152 Sum_probs=82.6
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC-CccccCCCCcccc
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG-KTIHSLNKNEHAL 257 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~-~~ih~~nK~~~~l 257 (354)
++|||+.+.++.|++.|+++.++|+-.......+.++. |....+-.+++-. . +...++ .......+. .+.
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~-Gi~~~~~~~v~g~-~------l~~~~~~~l~~~~~~~-~Vf 598 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL-GMPSKTSQSVSGE-K------LDAMDDQQLSQIVPKV-AVF 598 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCCCCceeEhH-H------hHhCCHHHHHHHhhcC-eEE
Confidence 88999999999999999999999999999999988876 7532211222110 0 000000 000000000 000
Q ss_pred cccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCC
Q 018557 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAP 337 (354)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t 337 (354)
....|-+ +...++.+++ .+..|.++|||.||..|.+ .+|..++.|.-...+. ++.-|+|+.+|.-
T Consensus 599 ar~~P~~-----K~~iv~~lq~--~g~~v~mvGDGvND~pAl~--~AdVGia~g~~g~~va------~~aaDivl~dd~~ 663 (884)
T TIGR01522 599 ARASPEH-----KMKIVKALQK--RGDVVAMTGDGVNDAPALK--LADIGVAMGQTGTDVA------KEAADMILTDDDF 663 (884)
T ss_pred EECCHHH-----HHHHHHHHHH--CCCEEEEECCCcccHHHHH--hCCeeEecCCCcCHHH------HHhcCEEEcCCCH
Confidence 0000000 0012222222 3468999999999999998 7887777765322333 3566999999865
Q ss_pred hHHHHH
Q 018557 338 MWEVVE 343 (354)
Q Consensus 338 ~~~~~~ 343 (354)
-.++..
T Consensus 664 ~~i~~~ 669 (884)
T TIGR01522 664 ATILSA 669 (884)
T ss_pred HHHHHH
Confidence 555543
No 81
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.53 E-value=0.00052 Score=65.83 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=37.0
Q ss_pred HHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHH---HHHHHHHHhcCC
Q 018557 171 KSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLAD---IIEEVLRQKVHK 219 (354)
Q Consensus 171 e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~---~Ie~vL~~~~g~ 219 (354)
+++......+.||+.+|+++|+++|++++|+|+.... .....|++. |+
T Consensus 110 ~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~-Gi 160 (266)
T TIGR01533 110 KWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRF-GF 160 (266)
T ss_pred HHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHc-Cc
Confidence 4444556789999999999999999999999997643 444666655 54
No 82
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.52 E-value=0.00019 Score=62.43 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=36.2
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.+.++||+.|||++|+ ++++++|+|++....++.+|+..
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l 81 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL 81 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh
Confidence 5789999999999999 57999999999999999999876
No 83
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=97.51 E-value=0.00093 Score=62.49 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=36.0
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
...+.||+.+|+..|+.+|+|++++|++.+.-++..++.+
T Consensus 90 ~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~ 129 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRH 129 (222)
T ss_pred ccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHh
Confidence 5899999999999999999999999999887777777766
No 84
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.49 E-value=0.0003 Score=77.76 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=84.6
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcC--CCcEEecCCCccccCCCCcc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDK--DGHLVSFKGKTIHSLNKNEH 255 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~--dG~l~gf~~~~ih~~nK~~~ 255 (354)
-++||++++.++.|++.||.+.++||-.......+-++. |+... ++++..- +++ +..+...- +-.+.+... .
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~l-GI~~~--~v~~g~~-l~~~~~~el~~~~-~~~~vfAr~-~ 587 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEV-GIDAN--DFLLGAD-IEELSDEELAREL-RKYHIFARL-T 587 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCCC--CeeecHh-hhhCCHHHHHHHh-hhCeEEEEC-C
Confidence 478999999999999999999999999998888887765 75211 2332210 000 00000000 000000000 0
Q ss_pred cccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcC
Q 018557 256 ALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLND 335 (354)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d 335 (354)
..+| ...++.++ +.+..|.++|||.||..+.+ .+|+-++.|-- ..+- +++-|||+++|
T Consensus 588 Pe~K-----------~~iV~~lq--~~G~vVam~GDGvNDapALk--~AdVGIAmg~g-tdvA------k~aADiVLldd 645 (867)
T TIGR01524 588 PMQK-----------SRIIGLLK--KAGHTVGFLGDGINDAPALR--KADVGISVDTA-ADIA------KEASDIILLEK 645 (867)
T ss_pred HHHH-----------HHHHHHHH--hCCCEEEEECCCcccHHHHH--hCCEEEEeCCc-cHHH------HHhCCEEEecC
Confidence 0011 01222233 23567999999999999998 88988898832 2232 56779999998
Q ss_pred CChHHHHHHH
Q 018557 336 APMWEVVELV 345 (354)
Q Consensus 336 ~t~~~~~~ll 345 (354)
.=-.++.++.
T Consensus 646 ~~~~I~~ai~ 655 (867)
T TIGR01524 646 SLMVLEEGVI 655 (867)
T ss_pred ChHHHHHHHH
Confidence 7666665543
No 85
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.46 E-value=0.00021 Score=79.19 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=83.6
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC-C---c---cccC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG-K---T---IHSL 250 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~-~---~---ih~~ 250 (354)
-++||++++.++.|++.||.+.++||-.......+-++. |+. ++ ++++-. + +....+ . . .+.+
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~l-GI~-~~-~vi~G~-e------l~~~~~~el~~~v~~~~Vf 618 (903)
T PRK15122 549 DPPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREV-GLE-PG-EPLLGT-E------IEAMDDAALAREVEERTVF 618 (903)
T ss_pred CccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCC-CC-CccchH-h------hhhCCHHHHHHHhhhCCEE
Confidence 489999999999999999999999999998888887765 752 11 222110 0 000000 0 0 0011
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccE
Q 018557 251 NKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDI 330 (354)
Q Consensus 251 nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDI 330 (354)
... ...+| ...++.++ +.+..|.++|||.||..+.+ .+|+-++.|-- -.+- +++-||
T Consensus 619 Ar~-sPe~K-----------~~iV~~Lq--~~G~vVamtGDGvNDaPALk--~ADVGIAmg~g-tdvA------keaADi 675 (903)
T PRK15122 619 AKL-TPLQK-----------SRVLKALQ--ANGHTVGFLGDGINDAPALR--DADVGISVDSG-ADIA------KESADI 675 (903)
T ss_pred EEe-CHHHH-----------HHHHHHHH--hCCCEEEEECCCchhHHHHH--hCCEEEEeCcc-cHHH------HHhcCE
Confidence 000 00111 01223333 24568999999999999998 88988898832 2332 567799
Q ss_pred EEEcCCChHHHHHH
Q 018557 331 VYLNDAPMWEVVEL 344 (354)
Q Consensus 331 V~v~d~t~~~~~~l 344 (354)
|+.+|.=-.++..+
T Consensus 676 VLldd~f~~Iv~ai 689 (903)
T PRK15122 676 ILLEKSLMVLEEGV 689 (903)
T ss_pred EEecCChHHHHHHH
Confidence 99998755555543
No 86
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.46 E-value=0.0002 Score=76.85 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=83.5
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l 257 (354)
-++|||+++.++.|++.||++.++||-.......+-++. |.. +++|+- .+-+|.+
T Consensus 440 Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~el-GI~----~v~A~~-----------------~PedK~~--- 494 (673)
T PRK14010 440 DVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEA-GVD----RFVAEC-----------------KPEDKIN--- 494 (673)
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCc----eEEcCC-----------------CHHHHHH---
Confidence 389999999999999999999999999998888887776 752 233321 1112221
Q ss_pred cccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCC
Q 018557 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAP 337 (354)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t 337 (354)
.++.++ +.+..|.++|||.||..+.. .+|.-++.|--.+- - +++-|||+.+|.-
T Consensus 495 ---------------iV~~lQ--~~G~~VaMtGDGvNDAPALa--~ADVGIAMgsGTdv-A------keAADiVLldd~l 548 (673)
T PRK14010 495 ---------------VIREEQ--AKGHIVAMTGDGTNDAPALA--EANVGLAMNSGTMS-A------KEAANLIDLDSNP 548 (673)
T ss_pred ---------------HHHHHH--hCCCEEEEECCChhhHHHHH--hCCEEEEeCCCCHH-H------HHhCCEEEcCCCH
Confidence 222233 23567999999999999988 78988998843332 2 5677999999876
Q ss_pred hHHHHHH
Q 018557 338 MWEVVEL 344 (354)
Q Consensus 338 ~~~~~~l 344 (354)
-.++..+
T Consensus 549 s~Iv~av 555 (673)
T PRK14010 549 TKLMEVV 555 (673)
T ss_pred HHHHHHH
Confidence 6666543
No 87
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.45 E-value=0.00026 Score=76.90 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=78.1
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l 257 (354)
.++|||+.+.++.|++.|++++++|+-.....+.+.++. |+ .++++ . .+.+|...
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~l-gi-----~~~~~----------------~-~p~~K~~~-- 621 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGEL-GI-----DFRAG----------------L-LPEDKVKA-- 621 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CC-----CeecC----------------C-CHHHHHHH--
Confidence 489999999999999999999999999999999998876 64 22221 0 01123321
Q ss_pred cccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCC
Q 018557 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAP 337 (354)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t 337 (354)
++.++ ...+|+++|||.||..+.. .+|..++.|.-.+-. .+.-||++.+|.-
T Consensus 622 ----------------v~~l~---~~~~v~mvGDgiNDapAl~--~A~vgia~g~~~~~a-------~~~adivl~~~~l 673 (741)
T PRK11033 622 ----------------VTELN---QHAPLAMVGDGINDAPAMK--AASIGIAMGSGTDVA-------LETADAALTHNRL 673 (741)
T ss_pred ----------------HHHHh---cCCCEEEEECCHHhHHHHH--hCCeeEEecCCCHHH-------HHhCCEEEecCCH
Confidence 12222 2358999999999999998 677777877543322 2345999988764
Q ss_pred hHHH
Q 018557 338 MWEV 341 (354)
Q Consensus 338 ~~~~ 341 (354)
..++
T Consensus 674 ~~l~ 677 (741)
T PRK11033 674 RGLA 677 (741)
T ss_pred HHHH
Confidence 4443
No 88
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.45 E-value=0.0003 Score=78.01 Aligned_cols=141 Identities=15% Similarity=0.122 Sum_probs=85.9
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee-eEEcCCCcEEecCCCccccCCCCccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR-MVFDKDGHLVSFKGKTIHSLNKNEHA 256 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~-~~fd~dG~l~gf~~~~ih~~nK~~~~ 256 (354)
-++||++++.++.|++.||++.++||-.......+-++. |+. +-++++.. +.-=++..+...- +..+.+... ..
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-GI~--~~~v~~G~el~~l~~~el~~~~-~~~~VfAr~-sP 623 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEV-GLD--AGEVLIGSDIETLSDDELANLA-ERTTLFARL-TP 623 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCC--ccCceeHHHHHhCCHHHHHHHH-hhCcEEEEc-CH
Confidence 489999999999999999999999999998888887776 752 11232211 0000000000000 000000000 00
Q ss_pred ccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCC
Q 018557 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDA 336 (354)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~ 336 (354)
.+| ...++.++ +.+..|.++|||.||..+.+ .+|+-++.|--. .+- +++-|||+.+|.
T Consensus 624 e~K-----------~~IV~~Lq--~~G~vVam~GDGvNDaPALk--~ADVGIAmg~gt-dvA------keaADiVLldd~ 681 (902)
T PRK10517 624 MHK-----------ERIVTLLK--REGHVVGFMGDGINDAPALR--AADIGISVDGAV-DIA------REAADIILLEKS 681 (902)
T ss_pred HHH-----------HHHHHHHH--HCCCEEEEECCCcchHHHHH--hCCEEEEeCCcC-HHH------HHhCCEEEecCC
Confidence 011 01222233 24567999999999999998 889989988432 233 567799999997
Q ss_pred ChHHHHHHH
Q 018557 337 PMWEVVELV 345 (354)
Q Consensus 337 t~~~~~~ll 345 (354)
=..++.++.
T Consensus 682 ~~~I~~ai~ 690 (902)
T PRK10517 682 LMVLEEGVI 690 (902)
T ss_pred hHHHHHHHH
Confidence 666666543
No 89
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.44 E-value=0.00029 Score=76.66 Aligned_cols=138 Identities=16% Similarity=0.071 Sum_probs=84.2
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcE-EecCC----Ccc---cc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHL-VSFKG----KTI---HS 249 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l-~gf~~----~~i---h~ 249 (354)
-++||++++.++.|++.||++.++||-.......+-++. |+.. .+++..-. . +|.- ...++ ..+ ..
T Consensus 441 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-GI~~---~~~~~~~l-~-~~~~~~~~~~~~~~~~~~~~~v 514 (755)
T TIGR01647 441 DPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRL-GLGT---NIYTADVL-L-KGDNRDDLPSGELGEMVEDADG 514 (755)
T ss_pred CCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCC---CCcCHHHh-c-CCcchhhCCHHHHHHHHHhCCE
Confidence 389999999999999999999999999999998888876 7532 12211100 0 0100 00000 000 00
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhccccc
Q 018557 250 LNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFD 329 (354)
Q Consensus 250 ~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fD 329 (354)
+... ...+| ...++.++ +.+..|.++|||.||..+.+ .+|+-++.|--. .+- +++-|
T Consensus 515 fAr~-~Pe~K-----------~~iV~~lq--~~G~~VamvGDGvNDapAL~--~AdVGIAm~~gt-dvA------keaAD 571 (755)
T TIGR01647 515 FAEV-FPEHK-----------YEIVEILQ--KRGHLVGMTGDGVNDAPALK--KADVGIAVAGAT-DAA------RSAAD 571 (755)
T ss_pred EEec-CHHHH-----------HHHHHHHH--hcCCEEEEEcCCcccHHHHH--hCCeeEEecCCc-HHH------HHhCC
Confidence 0000 00011 01222333 24568999999999999998 788888887322 222 56779
Q ss_pred EEEEcCCChHHHHHH
Q 018557 330 IVYLNDAPMWEVVEL 344 (354)
Q Consensus 330 IV~v~d~t~~~~~~l 344 (354)
||+.+|.=-.++..+
T Consensus 572 ivLl~d~l~~I~~ai 586 (755)
T TIGR01647 572 IVLTEPGLSVIVDAI 586 (755)
T ss_pred EEEEcCChHHHHHHH
Confidence 999999866655544
No 90
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.44 E-value=0.00023 Score=78.28 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=81.8
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l 257 (354)
-++|||+.+.++.|++.|+++.++|+......+.++++. |. + +++++-. +..|.+.
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l-gi--~--~~~~~~~-----------------p~~K~~~-- 704 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA-GI--D--EVIAGVL-----------------PDGKAEA-- 704 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CC--C--EEEeCCC-----------------HHHHHHH--
Confidence 378999999999999999999999999999999998876 64 2 3443211 1123221
Q ss_pred cccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCC
Q 018557 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAP 337 (354)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t 337 (354)
++.++ ....+++++|||.||..|+. .++..++.|.-.+.. .+..|+++++|.-
T Consensus 705 ----------------i~~l~--~~~~~v~~vGDg~nD~~al~--~Agvgia~g~g~~~a-------~~~ad~vl~~~~~ 757 (834)
T PRK10671 705 ----------------IKRLQ--SQGRQVAMVGDGINDAPALA--QADVGIAMGGGSDVA-------IETAAITLMRHSL 757 (834)
T ss_pred ----------------HHHHh--hcCCEEEEEeCCHHHHHHHH--hCCeeEEecCCCHHH-------HHhCCEEEecCCH
Confidence 11222 12458999999999999998 777778888643322 3457999988775
Q ss_pred hHHHHHH
Q 018557 338 MWEVVEL 344 (354)
Q Consensus 338 ~~~~~~l 344 (354)
-.++..+
T Consensus 758 ~~i~~~i 764 (834)
T PRK10671 758 MGVADAL 764 (834)
T ss_pred HHHHHHH
Confidence 5555543
No 91
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.35 E-value=0.00082 Score=59.54 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=36.7
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
-+.+|||+.|||++|.+. ++++|+|+|...+++.+++..
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~l 78 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDIL 78 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHH
Confidence 478999999999999988 999999999999999999976
No 92
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.00025 Score=78.78 Aligned_cols=145 Identities=19% Similarity=0.176 Sum_probs=89.5
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcE-EecCC-CccccCCCCcc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHL-VSFKG-KTIHSLNKNEH 255 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l-~gf~~-~~ih~~nK~~~ 255 (354)
-++||++++.++.|++.||++.++||=...-...+-++. |.... ... .+..+ |.- ....+ .....+.+..
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~-Gi~~~-~~~---~~vi~--G~el~~l~~~el~~~~~~~~- 617 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKEC-GIEAE-AES---ALVID--GAELDALSDEELAELVEELS- 617 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHc-CCCCC-CCc---eeEee--hHHhhhcCHHHHHHHhhhCc-
Confidence 589999999999999999999999999998888887776 64211 110 11221 211 11111 1111111111
Q ss_pred cccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcC
Q 018557 256 ALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLND 335 (354)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d 335 (354)
+.+.+.|-| +....+.++ +.+..|.++|||.||..|.+ .||+-+++|-=.. +.=+++-|||+.+|
T Consensus 618 VfARvsP~q-----K~~IV~~lq--~~g~vVamtGDGvNDapALk--~ADVGIamg~~Gt------daak~Aadivl~dd 682 (917)
T COG0474 618 VFARVSPEQ-----KARIVEALQ--KSGHVVAMTGDGVNDAPALK--AADVGIAMGGEGT------DAAKEAADIVLLDD 682 (917)
T ss_pred EEEEcCHHH-----HHHHHHHHH--hCCCEEEEeCCCchhHHHHH--hcCccEEecccHH------HHHHhhcceEeecC
Confidence 222222222 011233333 24678999999999999999 8888887775111 12245679999999
Q ss_pred CChHHHHHHH
Q 018557 336 APMWEVVELV 345 (354)
Q Consensus 336 ~t~~~~~~ll 345 (354)
.-..+++++.
T Consensus 683 ~~~~i~~av~ 692 (917)
T COG0474 683 NFATIVLAVV 692 (917)
T ss_pred cHHHHHHHHH
Confidence 8888877665
No 93
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.20 E-value=0.00084 Score=74.83 Aligned_cols=143 Identities=17% Similarity=0.132 Sum_probs=83.3
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC-CCccccCCCCccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK-GKTIHSLNKNEHA 256 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~-~~~ih~~nK~~~~ 256 (354)
-++||++++.++.|++.||++.++||-.......+-++. |...++..+++-. .++. .. +.......+. .+
T Consensus 578 Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~-GI~~~~~~vi~G~-~~~~------l~~~el~~~i~~~-~V 648 (941)
T TIGR01517 578 DPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNC-GILTFGGLAMEGK-EFRR------LVYEEMDPILPKL-RV 648 (941)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc-CCCCCCceEeeHH-Hhhh------CCHHHHHHHhccC-eE
Confidence 389999999999999999999999999998888887766 7632222222211 0000 00 0000000000 00
Q ss_pred ccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCC
Q 018557 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDA 336 (354)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~ 336 (354)
...+.|-+ +...++.+++ .+..|.++|||.||..|.+ .||+-++.|--...+- +++-|||+.+|.
T Consensus 649 far~sPe~-----K~~iV~~lq~--~g~vVam~GDGvNDapALk--~AdVGIAmg~~gtdvA------k~aADivL~dd~ 713 (941)
T TIGR01517 649 LARSSPLD-----KQLLVLMLKD--MGEVVAVTGDGTNDAPALK--LADVGFSMGISGTEVA------KEASDIILLDDN 713 (941)
T ss_pred EEECCHHH-----HHHHHHHHHH--CCCEEEEECCCCchHHHHH--hCCcceecCCCccHHH------HHhCCEEEecCC
Confidence 00000000 0012223332 3568999999999999998 7888888773222222 456799999986
Q ss_pred ChHHHHHH
Q 018557 337 PMWEVVEL 344 (354)
Q Consensus 337 t~~~~~~l 344 (354)
=-.++..+
T Consensus 714 f~~I~~~i 721 (941)
T TIGR01517 714 FASIVRAV 721 (941)
T ss_pred HHHHHHHH
Confidence 54444443
No 94
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.20 E-value=0.00084 Score=63.09 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCChhcccCCCccceeeeec
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLKYETRISVGF 312 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGf 312 (354)
+..+++++|||.||+.|++ .++..++.|.
T Consensus 214 ~~~e~i~~GD~~NDi~m~~--~ag~~vamgn 242 (272)
T PRK10530 214 SMKNVVAFGDNFNDISMLE--AAGLGVAMGN 242 (272)
T ss_pred CHHHeEEeCCChhhHHHHH--hcCceEEecC
Confidence 3468999999999999998 4555555553
No 95
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.20 E-value=0.00038 Score=77.39 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=79.3
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCc-EEecCCC-ccccCCCCcc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGH-LVSFKGK-TIHSLNKNEH 255 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~-l~gf~~~-~ih~~nK~~~ 255 (354)
-++|||+.+.++.|++.|+++.++|+-.......+.++. |...++..++... ++ |. +....+. ......+ ..
T Consensus 536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~-gi~~~~~~v~~~~--~~--g~~l~~~~~~~~~~~~~~-~~ 609 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRI-GIFSPDEDVTFKS--FT--GREFDEMGPAKQRAACRS-AV 609 (917)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHc-CCCCCCcccccee--ee--HHHHhhCCHHHHHHhhhc-Ce
Confidence 378999999999999999999999998888888888876 6533332222111 11 10 0000000 0000000 00
Q ss_pred cccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcC
Q 018557 256 ALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLND 335 (354)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d 335 (354)
+.+.+.|-+ +...++.++ ..+..|.++|||.||..|.+ .+|.-++.|.-.+-. ++.-|+|+.+|
T Consensus 610 v~ar~~P~~-----K~~iV~~lq--~~g~~va~iGDG~ND~~alk--~AdVGia~g~g~~~a-------k~aAD~vl~dd 673 (917)
T TIGR01116 610 LFSRVEPSH-----KSELVELLQ--EQGEIVAMTGDGVNDAPALK--KADIGIAMGSGTEVA-------KEASDMVLADD 673 (917)
T ss_pred EEEecCHHH-----HHHHHHHHH--hcCCeEEEecCCcchHHHHH--hCCeeEECCCCcHHH-------HHhcCeEEccC
Confidence 000000000 001122222 23457888999999999998 788777777432221 45679998886
Q ss_pred CChHHHH
Q 018557 336 APMWEVV 342 (354)
Q Consensus 336 ~t~~~~~ 342 (354)
. +..+.
T Consensus 674 ~-f~~i~ 679 (917)
T TIGR01116 674 N-FATIV 679 (917)
T ss_pred C-HHHHH
Confidence 4 44433
No 96
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.17 E-value=0.00058 Score=68.05 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=31.2
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEec----ChHHHHHHHHH
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSA----GLADIIEEVLR 214 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~Sa----G~~~~Ie~vL~ 214 (354)
+.+.||+.++|++|+++|++++|+|+ |.+.+++..|.
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~ 69 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFD 69 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHh
Confidence 68999999999999999999999999 55555555543
No 97
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.13 E-value=0.00043 Score=62.38 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=36.8
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecC-hHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAG-LADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG-~~~~Ie~vL~~~ 216 (354)
.+.+.||+.++++.|+++|++++|+|++ ....++.+|+..
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~ 83 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTF 83 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhC
Confidence 5789999999999999999999999988 888888888865
No 98
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.13 E-value=0.00071 Score=56.94 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=35.7
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecCh--------HHHHHHHHHHhcCC
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGL--------ADIIEEVLRQKVHK 219 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~--------~~~Ie~vL~~~~g~ 219 (354)
.+.||+.+++++|+++|++++|+|++. ...++.+++.. +.
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-~l 72 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-GV 72 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-CC
Confidence 578999999999999999999999998 77888888876 53
No 99
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.12 E-value=0.00057 Score=60.60 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=34.9
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecC---------------hHHHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAG---------------LADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG---------------~~~~Ie~vL~~~~g~ 219 (354)
+.+.||+.++|++|+++|++++|+|+. ....+..+|++. |.
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gl 83 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ-GI 83 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC-CC
Confidence 578999999999999999999999985 356778888876 53
No 100
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.05 E-value=0.00084 Score=59.76 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=26.8
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChH
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~ 206 (354)
+.+.||+.++|++|+++|++++|+|++..
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 57889999999999999999999998874
No 101
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.98 E-value=0.00046 Score=59.71 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=25.9
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChH
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~ 206 (354)
.+.||+.+++++|+++|++++|+|++.+
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~ 54 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSG 54 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCc
Confidence 5799999999999999999999999763
No 102
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.98 E-value=0.0021 Score=56.23 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 187 LFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 187 fl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.++.|+++|++++|+|++....++.++++. |.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~-gi 67 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL-GI 67 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc-CC
Confidence 789999999999999999999999999876 64
No 103
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.93 E-value=0.0027 Score=56.58 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=25.8
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecCh
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGL 205 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~ 205 (354)
..+.||+.++|++|+++|++++|+|++.
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 4688999999999999999999999875
No 104
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.90 E-value=0.0042 Score=54.85 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHH---HHHHH
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIE---EVLRQ 215 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie---~vL~~ 215 (354)
+.||+.++++.++++|++++++||-....+. ..|++
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 3589999999999999999999999876664 66665
No 105
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.89 E-value=0.0022 Score=72.38 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=82.6
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCC-----
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNK----- 252 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK----- 252 (354)
-++||++.+.++.|++.||++.++||-.......+-++. |+..++. +.+.-...+...+.|-. +...+.
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~-Gi~~~~~--~~~~~~~~~~~vitG~~---l~~l~~~~l~~ 718 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEV-GIIPPNF--IHDRDEIMDSMVMTGSQ---FDALSDEEVDD 718 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc-CCCCccc--cccccccccceeeehHH---hhhcCHHHHHH
Confidence 389999999999999999999999999999898888876 7532221 11100000111122211 000000
Q ss_pred ---CcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhccccc
Q 018557 253 ---NEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFD 329 (354)
Q Consensus 253 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fD 329 (354)
...+.+.+.|-+ +...++.++ +.+..|.++|||.||..|.+ .+|+.++.|.-...+- ++.-|
T Consensus 719 ~~~~~~V~ar~sP~~-----K~~iV~~lq--~~g~~Vam~GDGvNDapaLk--~AdVGIAmg~~gt~va------k~aAD 783 (1053)
T TIGR01523 719 LKALCLVIARCAPQT-----KVKMIEALH--RRKAFCAMTGDGVNDSPSLK--MANVGIAMGINGSDVA------KDASD 783 (1053)
T ss_pred HhhcCeEEEecCHHH-----HHHHHHHHH--hcCCeeEEeCCCcchHHHHH--hCCccEecCCCccHHH------HHhcC
Confidence 000111000000 001222222 13567999999999999998 7888888774322222 45679
Q ss_pred EEEEcCCChHHHH
Q 018557 330 IVYLNDAPMWEVV 342 (354)
Q Consensus 330 IV~v~d~t~~~~~ 342 (354)
||+.+|.=-.++.
T Consensus 784 ivl~dd~f~~I~~ 796 (1053)
T TIGR01523 784 IVLSDDNFASILN 796 (1053)
T ss_pred EEEecCCHHHHHH
Confidence 9998875444443
No 106
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.85 E-value=0.003 Score=70.95 Aligned_cols=146 Identities=12% Similarity=0.115 Sum_probs=83.2
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceE---EeeeeE--E-----cCCC--cEEecCCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKI---VSNRMV--F-----DKDG--HLVSFKGK 245 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~I---vSN~~~--f-----d~dG--~l~gf~~~ 245 (354)
-++||++++.++.|+++|+++.++||-...-+..+.++. |...++... +.+.+. . +++. .+.| +
T Consensus 567 Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G---~ 642 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV-GIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHG---S 642 (997)
T ss_pred CCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCCCccchhhhhhhccccccccccccccceEEEh---H
Confidence 489999999999999999999999999998888888876 652222110 000000 0 0000 1122 1
Q ss_pred ccccCCCC---------c-ccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccch
Q 018557 246 TIHSLNKN---------E-HALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLND 315 (354)
Q Consensus 246 ~ih~~nK~---------~-~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~ 315 (354)
.+...... . .+.+...|-+ +...++.+++ .+..|.++|||.||..|.+ .+|+.++.|.-..
T Consensus 643 ~l~~l~~~el~~~~~~~~~~VfaR~sPeq-----K~~IV~~lq~--~g~vv~~~GDG~ND~paLk--~AdVGiamg~~G~ 713 (997)
T TIGR01106 643 DLKDMTSEQLDEILKYHTEIVFARTSPQQ-----KLIIVEGCQR--QGAIVAVTGDGVNDSPALK--KADIGVAMGIAGS 713 (997)
T ss_pred HhhhCCHHHHHHHHHhcCCEEEEECCHHH-----HHHHHHHHHH--CCCEEEEECCCcccHHHHh--hCCcceecCCccc
Confidence 11111000 0 0111111100 0012222222 3457999999999999998 7888888775433
Q ss_pred HHHhhHhhhcccccEEEEcCCChHHHH
Q 018557 316 NIENNLDNYRNAFDIVYLNDAPMWEVV 342 (354)
Q Consensus 316 ~~ee~l~~y~~~fDIV~v~d~t~~~~~ 342 (354)
.+- +++-|||+.+|.=-.++.
T Consensus 714 ~va------k~aADivL~dd~f~~Iv~ 734 (997)
T TIGR01106 714 DVS------KQAADMILLDDNFASIVT 734 (997)
T ss_pred HHH------HHhhceEEecCCHHHHHH
Confidence 332 556799999885333443
No 107
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=96.76 E-value=0.0027 Score=56.91 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=68.7
Q ss_pred HHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccccccccccccC
Q 018557 188 FEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHF 267 (354)
Q Consensus 188 l~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l~~~~~~~~~~ 267 (354)
+..|+++|++++|+|++....++..|+++ +.. +++. + .+ .|.+....
T Consensus 43 ~~~L~~~Gi~laIiT~k~~~~~~~~l~~l-gi~----~~f~--------~----~k-------pkp~~~~~--------- 89 (169)
T TIGR02726 43 VIVLQLCGIDVAIITSKKSGAVRHRAEEL-KIK----RFHE--------G----IK-------KKTEPYAQ--------- 89 (169)
T ss_pred HHHHHHCCCEEEEEECCCcHHHHHHHHHC-CCc----EEEe--------c----CC-------CCHHHHHH---------
Confidence 45677899999999999999999999987 541 2221 1 01 11111110
Q ss_pred CCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCChHHHHHHHHH
Q 018557 268 GDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQ 347 (354)
Q Consensus 268 ~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~~~~~~ll~~ 347 (354)
..+.+ .+ ...+++++||+.+|+.|++ .+..-++.+--.+.+. ..-|.|......-.++.++++.
T Consensus 90 -----~~~~l-~~-~~~ev~~iGD~~nDi~~~~--~ag~~~am~nA~~~lk-------~~A~~I~~~~~~~g~v~e~~e~ 153 (169)
T TIGR02726 90 -----MLEEM-NI-SDAEVCYVGDDLVDLSMMK--RVGLAVAVGDAVADVK-------EAAAYVTTARGGHGAVREVAEL 153 (169)
T ss_pred -----HHHHc-Cc-CHHHEEEECCCHHHHHHHH--HCCCeEECcCchHHHH-------HhCCEEcCCCCCCCHHHHHHHH
Confidence 01111 11 3468999999999999998 4555555444443333 2335555444555566777777
Q ss_pred Hhc
Q 018557 348 LCS 350 (354)
Q Consensus 348 i~~ 350 (354)
|+.
T Consensus 154 il~ 156 (169)
T TIGR02726 154 ILK 156 (169)
T ss_pred HHH
Confidence 664
No 108
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.75 E-value=0.0018 Score=59.01 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCChhcccCCCccceeeeeccchHHH
Q 018557 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIE 318 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~e 318 (354)
..+++++||+.||+.|.+ .++..++.|--.+.+.
T Consensus 165 ~~~~i~~GD~~NDi~m~~--~ag~~vam~Na~~~~k 198 (225)
T TIGR01482 165 PGETLVCGDSENDIDLFE--VPGFGVAVANAQPELK 198 (225)
T ss_pred HHHEEEECCCHhhHHHHH--hcCceEEcCChhHHHH
Confidence 468999999999999998 4555566665444443
No 109
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0041 Score=67.74 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=82.4
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l 257 (354)
-++||++...+..|++.|++++++||-...-...+-++. |. . .|+|+-+- ..|.+.
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~V-Gi--~--~V~aev~P-----------------~~K~~~-- 777 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQV-GI--D--NVYAEVLP-----------------EQKAEK-- 777 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhh-Cc--c--eEEeccCc-----------------hhhHHH--
Confidence 579999999999999999999999999999999987776 63 2 56666332 123321
Q ss_pred cccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCC
Q 018557 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAP 337 (354)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t 337 (354)
++.++ +.+..|.++|||+||..+.- .+|.-++||--.+ +. .+.-|||++.+.=
T Consensus 778 ----------------Ik~lq--~~~~~VaMVGDGINDaPALA--~AdVGIaig~gs~-vA------ieaADIVLmrn~L 830 (951)
T KOG0207|consen 778 ----------------IKEIQ--KNGGPVAMVGDGINDAPALA--QADVGIAIGAGSD-VA------IEAADIVLMRNDL 830 (951)
T ss_pred ----------------HHHHH--hcCCcEEEEeCCCCccHHHH--hhccceeeccccH-HH------HhhCCEEEEccch
Confidence 22222 23578999999999998866 6777777775532 22 3466999998855
Q ss_pred hHHHHH
Q 018557 338 MWEVVE 343 (354)
Q Consensus 338 ~~~~~~ 343 (354)
.++|.+
T Consensus 831 ~~v~~a 836 (951)
T KOG0207|consen 831 RDVPFA 836 (951)
T ss_pred hhhHHH
Confidence 455443
No 110
>PLN02382 probable sucrose-phosphatase
Probab=96.67 E-value=0.027 Score=57.33 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=38.6
Q ss_pred CCceEEEEcCCCCChhcccCCCcc-ceeeeeccchHHHhhHhhhcc-cccEEEEcCCChHHHHHHHHH
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLKYE-TRISVGFLNDNIENNLDNYRN-AFDIVYLNDAPMWEVVELVSQ 347 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~~d-~vlaiGfL~~~~ee~l~~y~~-~fDIV~v~d~t~~~~~~ll~~ 347 (354)
+..+++.+|||.||+.|.. .++ .-++.|--.+.+.+....+.. .-+++...+..-+.+...|++
T Consensus 193 ~~~~~iafGDs~NDleMl~--~ag~~gvam~NA~~elk~~a~~~~~~~~~~~~a~~~~~~GI~~al~~ 258 (413)
T PLN02382 193 APVNTLVCGDSGNDAELFS--VPDVYGVMVSNAQEELLQWYAENAKDNPKIIHATERCAAGIIQAIGH 258 (413)
T ss_pred ChhcEEEEeCCHHHHHHHh--cCCCCEEEEcCCcHHHHHHHHhhccCCCcEEEcCCCCccHHHHHHHH
Confidence 3468999999999999987 455 456666655555544333332 225555554444444444443
No 111
>PRK06769 hypothetical protein; Validated
Probab=96.62 E-value=0.0011 Score=59.20 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=26.5
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChH
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~ 206 (354)
+.+.||+.++|++|+++|++++|+|++..
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 46889999999999999999999998764
No 112
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.56 E-value=0.014 Score=53.00 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=37.4
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+..|++.++++.|+++ ++++|+|.|........|++. |.
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-gl 137 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-GL 137 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-CC
Confidence 378999999999999999 999999999999999999987 53
No 113
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.55 E-value=0.0059 Score=59.40 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=19.5
Q ss_pred CceEEEEcCCCCChhcccCCCcccee
Q 018557 283 RTNVLLLGDHIGDLGMSDGLKYETRI 308 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl~~d~vl 308 (354)
.-.+|.+|||.||+.|.+-++.-+|+
T Consensus 226 ~~~tiaLGDspND~~mLe~~D~~vvi 251 (302)
T PRK12702 226 PIKALGIGCSPPDLAFLRWSEQKVVL 251 (302)
T ss_pred CceEEEecCChhhHHHHHhCCeeEEe
Confidence 34899999999999998843333444
No 114
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=96.51 E-value=0.0047 Score=63.93 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=73.9
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHAL 257 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l 257 (354)
-++||++.+.++.|++.|+.+.++|+........+-++. |. +++ ..+..|.+.
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l-gi-------~~~-----------------~~p~~K~~~-- 398 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL-GI-------FAR-----------------VTPEEKAAL-- 398 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-Cc-------eec-----------------cCHHHHHHH--
Confidence 389999999999999999999999999998887776654 42 111 011122211
Q ss_pred cccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCC
Q 018557 258 DMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAP 337 (354)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t 337 (354)
++.++ ..+..+.++|||.||..|.. .+|..+++| . .+.-||++.+|.-
T Consensus 399 ----------------v~~l~--~~g~~v~~vGDg~nD~~al~--~Advgia~~--a----------~~~adivl~~~~l 446 (499)
T TIGR01494 399 ----------------VEALQ--KKGRVVAMTGDGVNDAPALK--KADVGIAMG--A----------KAAADIVLLDDNL 446 (499)
T ss_pred ----------------HHHHH--HCCCEEEEECCChhhHHHHH--hCCCccccc--h----------HHhCCeEEecCCH
Confidence 11122 13468999999999999987 677777776 1 3457999998554
Q ss_pred hHHHH
Q 018557 338 MWEVV 342 (354)
Q Consensus 338 ~~~~~ 342 (354)
..++.
T Consensus 447 ~~i~~ 451 (499)
T TIGR01494 447 STIVD 451 (499)
T ss_pred HHHHH
Confidence 44444
No 115
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=96.44 E-value=0.0094 Score=55.84 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCChhcccCCC-ccceeeeeccchHHH
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLK-YETRISVGFLNDNIE 318 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~-~d~vlaiGfL~~~~e 318 (354)
+..+++++||+.||+.|.+ . +...++++--.+.+.
T Consensus 182 ~~~~~i~~GD~~ND~~ml~--~~~~~~va~~na~~~~k 217 (249)
T TIGR01485 182 EPSQTLVCGDSGNDIELFE--IGSVRGVIVSNAQEELL 217 (249)
T ss_pred CccCEEEEECChhHHHHHH--ccCCcEEEECCCHHHHH
Confidence 3578999999999999997 3 344455554444444
No 116
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.41 E-value=0.0031 Score=56.09 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.7
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHH------------HHHHHHHHhcCC
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLAD------------IIEEVLRQKVHK 219 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~------------~Ie~vL~~~~g~ 219 (354)
+-||+.++|+.|+++|++++|+|++... .++.+|++. |.
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~-gl 93 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL-KV 93 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc-CC
Confidence 5699999999999999999999997653 577788866 53
No 117
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=96.34 E-value=0.0073 Score=54.34 Aligned_cols=114 Identities=18% Similarity=0.118 Sum_probs=65.3
Q ss_pred HHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccccccccccccc
Q 018557 187 LFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEH 266 (354)
Q Consensus 187 fl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l~~~~~~~~~ 266 (354)
-++.|+++|++++|+|+.....+..++++. +. . ++++ | . .+|.+....
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l-gl--~--~~f~--------g----~-------~~k~~~l~~-------- 103 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTL-GI--T--HLYQ--------G----Q-------SNKLIAFSD-------- 103 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHc-CC--c--eeec--------C----C-------CcHHHHHHH--------
Confidence 445567799999999999999999999876 53 1 2322 1 0 112211110
Q ss_pred CCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCChHHHHHHHH
Q 018557 267 FGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVS 346 (354)
Q Consensus 267 ~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~~~~~~ll~ 346 (354)
..+.+ .+ ...+++||||+.+|+.|++ .+...+..+ + -.+.. ...-|.|+-.-+.-..+++|.+
T Consensus 104 ------~~~~~-gl-~~~ev~~VGDs~~D~~~a~--~aG~~~~v~--~--~~~~~---~~~a~~v~~~~~g~g~~~el~~ 166 (183)
T PRK09484 104 ------LLEKL-AI-APEQVAYIGDDLIDWPVME--KVGLSVAVA--D--AHPLL---LPRADYVTRIAGGRGAVREVCD 166 (183)
T ss_pred ------HHHHh-CC-CHHHEEEECCCHHHHHHHH--HCCCeEecC--C--hhHHH---HHhCCEEecCCCCCCHHHHHHH
Confidence 01111 11 3468999999999999998 333333322 1 11111 2233667655454556666666
Q ss_pred HHh
Q 018557 347 QLC 349 (354)
Q Consensus 347 ~i~ 349 (354)
.|+
T Consensus 167 ~i~ 169 (183)
T PRK09484 167 LLL 169 (183)
T ss_pred HHH
Confidence 664
No 118
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.22 E-value=0.0082 Score=53.34 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=33.0
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecCh-HHHHHHHHHHh
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGL-ADIIEEVLRQK 216 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~-~~~Ie~vL~~~ 216 (354)
..+.||+.++++.|+++|++++|+|++. ...+..+++..
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~ 81 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL 81 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc
Confidence 4678999999999999999999999998 56776666543
No 119
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=95.92 E-value=0.066 Score=50.30 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=33.5
Q ss_pred CceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCChHHHHHHHHHHh
Q 018557 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQLC 349 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~~~~~~ll~~i~ 349 (354)
..+|+.+|||.||+.|.. .+..-++.|--.+.+.+ +.+ ++.....-+.|...|+++.
T Consensus 205 ~~~v~afGD~~ND~~Ml~--~ag~gvam~Na~~~~k~----~A~----~vt~~n~~~Gv~~~l~~~~ 261 (264)
T COG0561 205 LEEVIAFGDSTNDIEMLE--VAGLGVAMGNADEELKE----LAD----YVTTSNDEDGVAEALEKLL 261 (264)
T ss_pred HHHeEEeCCccccHHHHH--hcCeeeeccCCCHHHHh----hCC----cccCCccchHHHHHHHHHh
Confidence 458999999999999998 44444454444333332 232 3334444455555555443
No 120
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=95.72 E-value=0.015 Score=63.03 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=83.9
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCC--CCc-
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLN--KNE- 254 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~n--K~~- 254 (354)
-|+||++.+-++.|++.||.+.+++|-...-.+.+-++. |....+.. +++... . |. .|++-..+... +..
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~i-Gi~~~~ed-~~~~~~-T--G~--efD~ls~~~~~~~~~~~ 655 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREI-GIFSEDED-VSSMAL-T--GS--EFDDLSDEELDDAVRRV 655 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHh-CCCcCCcc-cccccc-c--hh--hhhcCCHHHHHHHhhcc
Confidence 589999999999999999999999999998888888776 65222222 333221 1 11 12210000000 000
Q ss_pred ccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEc
Q 018557 255 HALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLN 334 (354)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~ 334 (354)
...-.++|=| +.+.++.+++ ...-|-+-|||.||..+.+ .+|..+|-|----.|- +++-|+|+.|
T Consensus 656 ~vFaR~~P~H-----K~kIVeaLq~--~geivAMTGDGVNDApALK--~AdIGIAMG~~GTdVa------KeAsDMVL~D 720 (972)
T KOG0202|consen 656 LVFARAEPQH-----KLKIVEALQS--RGEVVAMTGDGVNDAPALK--KADIGIAMGISGTDVA------KEASDMVLAD 720 (972)
T ss_pred eEEEecCchh-----HHHHHHHHHh--cCCEEEecCCCccchhhhh--hcccceeecCCccHhh------HhhhhcEEec
Confidence 0000000111 0012222221 2345667899999999988 7888888885444444 5677999999
Q ss_pred CCChHHHH
Q 018557 335 DAPMWEVV 342 (354)
Q Consensus 335 d~t~~~~~ 342 (354)
|.==..+.
T Consensus 721 DnFstIva 728 (972)
T KOG0202|consen 721 DNFSTIVA 728 (972)
T ss_pred CcHHHHHH
Confidence 86444443
No 121
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.67 E-value=0.047 Score=51.00 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=34.8
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHH--HHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIE--EVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie--~vL~~~~g~ 219 (354)
+..+.||+.|++++|+++|++++|+|++.+...+ ..|++. |.
T Consensus 22 ~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~-gl 65 (242)
T TIGR01459 22 GNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL-GI 65 (242)
T ss_pred CCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC-CC
Confidence 3567899999999999999999999998876655 667665 54
No 122
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=95.51 E-value=0.029 Score=54.61 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=38.0
Q ss_pred Cccc-ccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 178 IAFR-DGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~Lr-pG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
+.+| ||+.|+|++|+++|++++|+|+|.+..++..|++. |.
T Consensus 144 v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l-GL 185 (301)
T TIGR01684 144 VRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV-KL 185 (301)
T ss_pred cccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc-CC
Confidence 6678 99999999999999999999999999999999986 65
No 123
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.06 Score=58.68 Aligned_cols=136 Identities=16% Similarity=0.186 Sum_probs=88.3
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCC----------Ccc
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKG----------KTI 247 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~----------~~i 247 (354)
-|.|||+++-++.|+..||.+-.+++-+-.-..++-.++ |+..|+..-.+=+ |. .|.. |-+
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eC-GILt~~~d~~~lE------G~--eFr~~s~ee~~~i~pkl 716 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIAREC-GILTPGGDFLALE------GK--EFRELSQEERDKIWPKL 716 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHc-ccccCCCccceec------ch--hhhhcCHHHHHhhhhhh
Confidence 589999999999999999999999999998888888887 7655433211110 11 1221 111
Q ss_pred ccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhccc
Q 018557 248 HSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNA 327 (354)
Q Consensus 248 h~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~ 327 (354)
.+.... +..+| ....+..+ +.+.-|-.-|||.||..+.+ .||.-|+-|----.+. +++
T Consensus 717 ~VlARS-SP~DK-----------~lLVk~L~--~~g~VVAVTGDGTNDaPALk--eADVGlAMGIaGTeVA------KEa 774 (1034)
T KOG0204|consen 717 RVLARS-SPNDK-----------HLLVKGLI--KQGEVVAVTGDGTNDAPALK--EADVGLAMGIAGTEVA------KEA 774 (1034)
T ss_pred eeeecC-CCchH-----------HHHHHHHH--hcCcEEEEecCCCCCchhhh--hcccchhccccchhhh------hhh
Confidence 111110 00110 00111111 23456667899999999988 8998899887766555 567
Q ss_pred ccEEEEcCCChHHHHHH
Q 018557 328 FDIVYLNDAPMWEVVEL 344 (354)
Q Consensus 328 fDIV~v~d~t~~~~~~l 344 (354)
-||++.||.=-.+|.++
T Consensus 775 SDIIi~DDNFssIVk~v 791 (1034)
T KOG0204|consen 775 SDIIILDDNFSSIVKAV 791 (1034)
T ss_pred CCeEEEcCchHHHHHHH
Confidence 79999999866666654
No 124
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=95.42 E-value=0.083 Score=47.59 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=27.2
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHH-------HHHHHHHHhcC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLAD-------IIEEVLRQKVH 218 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~-------~Ie~vL~~~~g 218 (354)
++++.||+.|.++.|.+.|..++++|+.... .-..-|+++++
T Consensus 71 ~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~ 119 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFP 119 (191)
T ss_dssp T--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcC
Confidence 5789999999999999999666666655432 33456666644
No 125
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=95.15 E-value=0.043 Score=53.49 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=44.0
Q ss_pred CCccc-ccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEE
Q 018557 177 LIAFR-DGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVF 233 (354)
Q Consensus 177 ~i~Lr-pG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~f 233 (354)
.+.+| ||+.++|+.|+++|++++|+|+|.+..++..|+.. |....-..|+++.-..
T Consensus 145 ~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l-gL~~yFDvII~~g~i~ 201 (303)
T PHA03398 145 PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET-KLEGYFDIIICGGRKA 201 (303)
T ss_pred ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc-CCCccccEEEECCCcc
Confidence 46778 99999999999999999999999999999999987 5421112466665433
No 126
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=94.95 E-value=0.06 Score=57.88 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=31.2
Q ss_pred cCCCceEECChhHHHHHHHHHH--hcCCCcEEEEEecccccccc
Q 018557 57 DLSKFTIKGDPQSLQNKISQIR--MAGPSKLQVIADFDGTLTRY 98 (354)
Q Consensus 57 ~~~~~v~i~d~~~~~~k~~~~~--~~g~~kl~Vi~DFDgTIT~~ 98 (354)
..-+++++.|-+-+-+-+-.++ .+|-.+-.|++|+||||+..
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KLIfsDLDGTLLd~ 430 (694)
T PRK14502 387 KYLPQMVLPDGELISRAARPSRLPSSGQFKKIVYTDLDGTLLNP 430 (694)
T ss_pred HhchheeCCCCCccchhhhcccCCCcCceeeEEEEECcCCCcCC
Confidence 5667778877777776665544 34666778999999999984
No 127
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=94.94 E-value=0.056 Score=47.70 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=41.6
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEE
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVF 233 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~f 233 (354)
.+.+|||+.+||+.|++. ++++|+|+|...+++.+++.. + |.-.++++++..
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l-d---p~~~~F~~ri~~ 107 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI-D---PDGKYFGDRIIS 107 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh-C---cCCCeeccEEEE
Confidence 578999999999999966 999999999999999999876 4 221345455443
No 128
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=94.69 E-value=0.023 Score=64.29 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=37.8
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKS 220 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~ 220 (354)
-++||++.+.++.|++.||++.++||-...-...+-++. |..
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~-gii 696 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVAREC-GIV 696 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCC
Confidence 379999999999999999999999999998888887776 763
No 129
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=94.55 E-value=0.41 Score=45.55 Aligned_cols=189 Identities=17% Similarity=0.182 Sum_probs=101.7
Q ss_pred HHHHhcCCCcEEEEEecccccccccccCccccchHHHhhccChhHHHH-HHHHHHhhCCCCCCCCCCHHHHHHHHH-HHH
Q 018557 75 SQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAK-RQALYEYYHPLEFSPTVPLEEKTKLME-EWW 152 (354)
Q Consensus 75 ~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~-~~~L~~~y~p~E~d~~is~~Ek~~~m~-ew~ 152 (354)
.+..+.......||+|-|-||.. +. ..+- .+.+... +..|... ..+..++.+..+ +|.
T Consensus 11 ~~~~~~~~~~tLvvfDiDdTLi~--------~~--~~lg--~~~w~~~~~~~l~~~--------~~~~~~~~~~~~~~~l 70 (252)
T PF11019_consen 11 QDYLENADQDTLVVFDIDDTLIT--------PK--QPLG--SPAWYQWQLGKLQKR--------GKSEYKAVECIFEEWL 70 (252)
T ss_pred HHHHHcCCCCeEEEEEcchhhhc--------Cc--cccC--CchhHHHHHHHHHhh--------ccchhhhhhHHHHHHH
Confidence 34445555899999999999998 11 1111 1334443 2244221 123333333333 444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh--cCCCCCcceEEeee
Q 018557 153 GKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK--VHKSFKNVKIVSNR 230 (354)
Q Consensus 153 ~~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~--~g~~~~ni~IvSN~ 230 (354)
.. +.+... ...+.+.+.++++.|+++|+|++.+|+....+....+++. +|+.|.+ .
T Consensus 71 ~~--------------i~~~~~--~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~------~ 128 (252)
T PF11019_consen 71 SL--------------IFELRK--MELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSS------S 128 (252)
T ss_pred HH--------------HHhhcc--eEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccc------c
Confidence 11 112222 3467788999999999999999999999887777777654 3554432 2
Q ss_pred eEEcCCCcEEe------------cCCCcc--ccCCCCcccccccccccccCCCCCCCCccccccCCCceEEEEcCCCCCh
Q 018557 231 MVFDKDGHLVS------------FKGKTI--HSLNKNEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDL 296 (354)
Q Consensus 231 ~~fd~dG~l~g------------f~~~~i--h~~nK~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl 296 (354)
. |.++|.+.. |....+ ...+|.+...+ .+.... ...++||||-|+.-.+
T Consensus 129 ~-~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~--------------fL~~~~--~~pk~IIfIDD~~~nl 191 (252)
T PF11019_consen 129 S-FPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKY--------------FLDKIN--QSPKKIIFIDDNKENL 191 (252)
T ss_pred c-cccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHH--------------HHHHcC--CCCCeEEEEeCCHHHH
Confidence 2 333333311 111111 12334332111 111111 1346899999998877
Q ss_pred hcccCC-CccceeeeeccchHHHhhHh
Q 018557 297 GMSDGL-KYETRISVGFLNDNIENNLD 322 (354)
Q Consensus 297 ~ma~gl-~~d~vlaiGfL~~~~ee~l~ 322 (354)
.-+... ..-.+.-+||.....+++..
T Consensus 192 ~sv~~a~k~~~I~f~G~~Yt~~~~~~~ 218 (252)
T PF11019_consen 192 KSVEKACKKSGIDFIGFHYTGAEERPP 218 (252)
T ss_pred HHHHHHHhhCCCcEEEEEEcchhhccC
Confidence 765422 12345677877777666433
No 130
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=94.15 E-value=0.054 Score=46.78 Aligned_cols=93 Identities=10% Similarity=0.027 Sum_probs=59.6
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCccc
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHA 256 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~ 256 (354)
+=.|-+.+.+.++.|++. +.++|+|+--.-.++..++-. |... -+| +.+. |...|..
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~-gi~~--~rv----~a~a-------------~~e~K~~-- 84 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFV-GIPV--ERV----FAGA-------------DPEMKAK-- 84 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHc-CCce--eee----eccc-------------CHHHHHH--
Confidence 347888899999999999 999999998877777766643 5421 111 1111 1111221
Q ss_pred ccccccccccCCCCCCCCccccccCCCceEEEEcCCCCChhcccCCCccc-eeeeec
Q 018557 257 LDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDHIGDLGMSDGLKYET-RISVGF 312 (354)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~-vlaiGf 312 (354)
.++.++ +++..++++|||.||.-|.+ .+|. +..++-
T Consensus 85 ----------------ii~eLk--k~~~k~vmVGnGaND~laLr--~ADlGI~tiq~ 121 (152)
T COG4087 85 ----------------IIRELK--KRYEKVVMVGNGANDILALR--EADLGICTIQQ 121 (152)
T ss_pred ----------------HHHHhc--CCCcEEEEecCCcchHHHhh--hcccceEEecc
Confidence 222222 24578999999999999987 5553 244443
No 131
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=94.06 E-value=0.06 Score=45.60 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=34.8
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecC-hHHHHHHHHHHh
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAG-LADIIEEVLRQK 216 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG-~~~~Ie~vL~~~ 216 (354)
.+.||+.+++++|+++|++++|+|++ ...++..+++..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~ 67 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIF 67 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhc
Confidence 68899999999999999999999999 888888888765
No 132
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.77 E-value=0.051 Score=52.06 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=37.1
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
...+.||+.++++.|+++|++++|+|+......+.+++..
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l 224 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL 224 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH
Confidence 4578999999999999999999999999999999999876
No 133
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=93.77 E-value=0.74 Score=43.37 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=38.4
Q ss_pred HHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHH---HHHHHHHhcC
Q 018557 169 IKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADI---IEEVLRQKVH 218 (354)
Q Consensus 169 i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~---Ie~vL~~~~g 218 (354)
+.+.+.+...+..||+.+|++.|+++|+.++++|+=.... ...-|++. |
T Consensus 110 ~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~-G 161 (229)
T TIGR01675 110 FWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINA-G 161 (229)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHc-C
Confidence 3345556677999999999999999999999999877544 55666655 5
No 134
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.26 E-value=1.1 Score=42.22 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=30.0
Q ss_pred CccccccCCCceEEEEcCCCCChhcccCCCccceeeeeccchH
Q 018557 274 NYDNASVKNRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDN 316 (354)
Q Consensus 274 ~~~~~~l~~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~ 316 (354)
++.|+.+..-..++-+|||.||+.|.+ -.|..|.++-||+.
T Consensus 200 l~~y~rl~~~r~t~~~GDg~nD~Pl~e--v~d~AfiV~~lnre 240 (274)
T COG3769 200 LETYRRLGGARTTLGLGDGPNDAPLLE--VMDYAFIVKGLNRE 240 (274)
T ss_pred HHHHHhcCceeEEEecCCCCCcccHHH--hhhhheeecccchh
Confidence 344554443345888999999999998 56777888877754
No 135
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=93.19 E-value=0.14 Score=58.08 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=35.8
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
-+|+||+.+.++.|++.||++.++||-...-...+-++. |.
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~-~i 670 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSC-RL 670 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHh-CC
Confidence 489999999999999999999999998887777777766 54
No 136
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=92.97 E-value=0.32 Score=45.60 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHhcCCcccccHHHHHHHHHhCCCCEEEEecC---hHHHHHHHHHHhcCC
Q 018557 172 SVSNALIAFRDGVVKLFEFLEERDIPVLIFSAG---LADIIEEVLRQKVHK 219 (354)
Q Consensus 172 ~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG---~~~~Ie~vL~~~~g~ 219 (354)
++.+...+.-||+.+|+++++++|+.|+++|+= .+.....-|++. |.
T Consensus 108 wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~-G~ 157 (229)
T PF03767_consen 108 WVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKA-GF 157 (229)
T ss_dssp HHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHH-TT
T ss_pred HHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHc-CC
Confidence 344445588999999999999999999999964 445666667766 63
No 137
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=92.90 E-value=0.091 Score=51.38 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=34.1
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHH
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQ 215 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~ 215 (354)
+.+|+.++++.|+++|++++|+|......+..+|++
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER 67 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999997
No 138
>PLN03190 aminophospholipid translocase; Provisional
Probab=92.28 E-value=0.079 Score=60.63 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=33.6
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
-++|+|+.+.++.|++.||.+.++||-...-...+-++.
T Consensus 725 D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~ 763 (1178)
T PLN03190 725 DKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSS 763 (1178)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHh
Confidence 389999999999999999999999998876666665554
No 139
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=92.00 E-value=0.59 Score=46.61 Aligned_cols=41 Identities=7% Similarity=0.102 Sum_probs=38.0
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVH 218 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g 218 (354)
+...||+.++|+.|+++|++++|+|++..++++.+|+..+|
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 66799999999999999999999999999999999998644
No 140
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=91.72 E-value=3.8 Score=38.55 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=70.8
Q ss_pred hcCCCcEEEEEecccccccccccCccccch-HHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHH---
Q 018557 79 MAGPSKLQVIADFDGTLTRYFINGSRGQSS-HGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGK--- 154 (354)
Q Consensus 79 ~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~-~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~--- 154 (354)
..|+.--.++||.|-||-.- .+. +.+.++.-.+| +.++ ..++-++-.+.+++.+..
T Consensus 10 ~~~~~~~~l~FDiDdtLYp~-------St~i~~~~~~nI~~f------~~ek-------lgi~~e~a~~L~~~~yk~YG~ 69 (244)
T KOG3109|consen 10 SSGPNYKCLFFDIDDTLYPL-------STGIQLMMRNNIQEF------FVEK-------LGISEEEAEELRESLYKEYGL 69 (244)
T ss_pred cCCccceEEEEecccccccC-------chhHHHHHHHHHHHH------HHHH-------hCCChhhhHHHHHHHHHHHhH
Confidence 45667778999999999882 222 22222111111 1111 113333333344332221
Q ss_pred -HHHH-HHhcCCCHHHHHHHHHh----cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 155 -THGL-LIEGGLTYDAIKKSVSN----ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 155 -~~~l-l~~~glt~~~i~e~v~~----~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
...| .....++.+++.++|.. ..+...+-.+++|-.|+.++ ..|||.|...-...+|+.. |+
T Consensus 70 t~aGL~~~~~~~d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~L-Gi 137 (244)
T KOG3109|consen 70 TMAGLKAVGYIFDADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKL-GI 137 (244)
T ss_pred HHHHHHHhcccCCHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHh-Ch
Confidence 1112 13345557778887754 23677778889998888876 8899999999999999987 75
No 141
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=91.66 E-value=0.25 Score=51.93 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=32.0
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChH------------HHHHHHHHHhcCC
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLA------------DIIEEVLRQKVHK 219 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~------------~~Ie~vL~~~~g~ 219 (354)
+.||+.+.|+.|++.|++++|+|+-.+ ..++.+|++. |.
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~l-gi 248 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKL-GV 248 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHc-CC
Confidence 579999999999999999999997433 4577888876 54
No 142
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=91.66 E-value=0.14 Score=44.34 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=32.9
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.+.+|||+.+||++|.+. +.++|+|+|...+++.+++..
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~l 72 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDAL 72 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHH
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhh
Confidence 578999999999999655 999999999999999999977
No 143
>PLN02151 trehalose-phosphatase
Probab=91.43 E-value=0.69 Score=46.30 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=23.1
Q ss_pred CChhHHHHHHHHHHhc-CCCcEEEEEecccccccc
Q 018557 65 GDPQSLQNKISQIRMA-GPSKLQVIADFDGTLTRY 98 (354)
Q Consensus 65 ~d~~~~~~k~~~~~~~-g~~kl~Vi~DFDgTIT~~ 98 (354)
+-|..+. .+.++... ..+++.+++||||||+.+
T Consensus 79 ~~p~a~~-~~~~~~~~~~~~~~ll~lDyDGTL~PI 112 (354)
T PLN02151 79 EHPSALN-MFEEILHKSEGKQIVMFLDYDGTLSPI 112 (354)
T ss_pred hCChHHH-HHHHHHHhhcCCceEEEEecCccCCCC
Confidence 4455554 44555554 457899999999999984
No 144
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=90.83 E-value=0.68 Score=52.68 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=31.6
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
-+|-+|+.|.++.|++.||++.|++|=-.+-...+.-..
T Consensus 650 DkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC 688 (1151)
T KOG0206|consen 650 DKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSC 688 (1151)
T ss_pred chhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhh
Confidence 478899999999999999999999997765555554444
No 145
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=90.70 E-value=0.5 Score=45.06 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCChhcccCCC--ccceeeee
Q 018557 283 RTNVLLLGDHIGDLGMSDGLK--YETRISVG 311 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl~--~d~vlaiG 311 (354)
...++++||+.||..|...+. ...-+++|
T Consensus 190 ~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg 220 (266)
T PRK10187 190 GRTPVFVGDDLTDEAGFAVVNRLGGISVKVG 220 (266)
T ss_pred CCeEEEEcCCccHHHHHHHHHhcCCeEEEEC
Confidence 457999999999999977331 13445555
No 146
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=90.59 E-value=0.35 Score=42.95 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=29.3
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecCh---HHHHHHHHHHh
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGL---ADIIEEVLRQK 216 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~---~~~Ie~vL~~~ 216 (354)
..++|+.+++..++++|+.++=+|+=. .......|++.
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 457899999999999999999999754 35555555543
No 147
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=90.55 E-value=0.56 Score=38.18 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=30.2
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChH---HHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLA---DIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~---~~Ie~vL~~~~g~ 219 (354)
-.+-||+.|++++|+++|+|++++|.+-. .-+...|+.. |+
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~-Gi 56 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL-GI 56 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT-TT
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc-Cc
Confidence 46789999999999999999999997763 3344445554 65
No 148
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=90.29 E-value=0.58 Score=42.55 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=23.9
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEec
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSA 203 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~Sa 203 (354)
..+.||+.+.+..|++.|+.++|+|.
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEEC
Confidence 46889999999999999999999996
No 149
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=89.73 E-value=0.5 Score=43.40 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=35.3
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
+..|||+.+||+++.+ .+.++|+||+...+++.++...
T Consensus 44 ~~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred EEeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHh
Confidence 4679999999999999 7999999999999999999976
No 150
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.67 E-value=1.2 Score=42.55 Aligned_cols=81 Identities=14% Similarity=0.041 Sum_probs=59.7
Q ss_pred CCCCCcceEEeeeeEEcCCCcEEecCCCccccCCCCcccccccccccccCCCC--CCCCccccccCCCceEEEEcCCCCC
Q 018557 218 HKSFKNVKIVSNRMVFDKDGHLVSFKGKTIHSLNKNEHALDMAAPLHEHFGDT--DGPNYDNASVKNRTNVLLLGDHIGD 295 (354)
Q Consensus 218 g~~~~ni~IvSN~~~fd~dG~l~gf~~~~ih~~nK~~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~r~~vI~iGDg~~D 295 (354)
.+.+.+++..||++.+.+++..+.+.|..||..++++++.....+.+.-++.. ....++| .++.+|+++||-..|
T Consensus 209 nkn~~v~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~y---md~ydIvL~~D~tld 285 (298)
T KOG3128|consen 209 NKNSSVLQNESEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKY---MDSYDIVLVHDETLD 285 (298)
T ss_pred ccchHHHHhhhHHHhhccCCceEEEeccccccchhhcCCcccccceeeecccchHHHHHHHH---HhhcceEEecCcccc
Confidence 34456778899999999888888899999999999988876665555433322 1222233 367899999999999
Q ss_pred hhcccC
Q 018557 296 LGMSDG 301 (354)
Q Consensus 296 l~ma~g 301 (354)
+.+..+
T Consensus 286 v~~s~l 291 (298)
T KOG3128|consen 286 VANSIL 291 (298)
T ss_pred hhHHHH
Confidence 998753
No 151
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=86.98 E-value=5.5 Score=37.77 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=29.1
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.-.+-+|+.++++.||+.|+.+.|+|..-. -.+.++...
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~-r~~~~l~~~ 149 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFDD-RLRLLLLPL 149 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCcH-HHHHHhhcc
Confidence 345677888999999999988888887655 444555544
No 152
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=86.77 E-value=4 Score=37.42 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-------cCCcccccHHHHHHHHHhCCCCEEEEecChH
Q 018557 138 TVPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSN-------ALIAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 138 ~is~~Ek~~~m~ew~~~~~~ll~~~glt~~~i~e~v~~-------~~i~LrpG~~efl~~L~~~gipv~I~SaG~~ 206 (354)
..+.|+-+..+.+|...-.+. -...+++-++-. -+.+|-|.+.+.++.-++.|+|++|-|+|--
T Consensus 60 ~~s~E~lva~~~~wiaed~K~-----t~lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV 130 (229)
T COG4229 60 ANSEEALVALLLEWIAEDSKD-----TPLKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSV 130 (229)
T ss_pred cchHHHHHHHHHHHHhccccc-----chHHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCc
Confidence 345555567777888644321 112333333322 1368899999999999999999999999964
No 153
>PRK10976 putative hydrolase; Provisional
Probab=86.60 E-value=0.72 Score=43.23 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCChhcccCCCccceeeeeccchHHHh
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIEN 319 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee 319 (354)
+..+++.+|||.||+.|.+ .++.-++.|--.+.+.+
T Consensus 205 ~~~~viafGD~~NDi~Ml~--~ag~~vAm~NA~~~vK~ 240 (266)
T PRK10976 205 SLKDCIAFGDGMNDAEMLS--MAGKGCIMGNAHQRLKD 240 (266)
T ss_pred CHHHeEEEcCCcccHHHHH--HcCCCeeecCCcHHHHH
Confidence 3568999999999999998 45555666655555543
No 154
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=84.66 E-value=0.52 Score=42.99 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCChhcccCCCccceeeeeccchHHHh
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIEN 319 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee 319 (354)
+..+++++|||.||+.|++ .++..++.|-..+.+.+
T Consensus 172 ~~~~~i~~GD~~NDi~m~~--~ag~~vam~Na~~~vk~ 207 (230)
T PRK01158 172 DPEEVAAIGDSENDLEMFE--VAGFGVAVANADEELKE 207 (230)
T ss_pred CHHHEEEECCchhhHHHHH--hcCceEEecCccHHHHH
Confidence 3468999999999999998 56666677766555553
No 155
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=84.30 E-value=0.57 Score=42.28 Aligned_cols=35 Identities=14% Similarity=0.333 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCChhcccCCCccceeeeeccchHHH
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIE 318 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~e 318 (354)
...+++.+|||.||+.|.+ .++.-++.|...+.+.
T Consensus 201 ~~~~~~~~GD~~ND~~Ml~--~~~~~~am~na~~~~k 235 (254)
T PF08282_consen 201 SPEDIIAFGDSENDIEMLE--LAGYSVAMGNATPELK 235 (254)
T ss_dssp SGGGEEEEESSGGGHHHHH--HSSEEEEETTS-HHHH
T ss_pred ccceeEEeecccccHhHHh--hcCeEEEEcCCCHHHH
Confidence 3568999999999999998 5566677776655554
No 156
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=84.04 E-value=0.59 Score=43.85 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCChhcccCCCccceeeeeccchHHHh
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIEN 319 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee 319 (354)
+..+++.+|||.||+.|.+ .++.-++.|--.+.+.+
T Consensus 211 ~~~~v~afGD~~NDi~Ml~--~ag~~vAm~NA~~~vK~ 246 (270)
T PRK10513 211 KPEEVMAIGDQENDIAMIE--YAGVGVAMGNAIPSVKE 246 (270)
T ss_pred CHHHEEEECCchhhHHHHH--hCCceEEecCccHHHHH
Confidence 3568999999999999998 56666777766555543
No 157
>PLN02580 trehalose-phosphatase
Probab=83.18 E-value=1.8 Score=43.90 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=18.9
Q ss_pred HHHHHHhc-CCCcEEEEEecccccccc
Q 018557 73 KISQIRMA-GPSKLQVIADFDGTLTRY 98 (354)
Q Consensus 73 k~~~~~~~-g~~kl~Vi~DFDgTIT~~ 98 (354)
...+|.+. ..+++.+++||||||+.+
T Consensus 107 ~~~~~~~~~~~k~~~LfLDyDGTLaPI 133 (384)
T PLN02580 107 SFEQIANFAKGKKIALFLDYDGTLSPI 133 (384)
T ss_pred HHHHHHHHhhcCCeEEEEecCCccCCC
Confidence 33444433 446899999999999996
No 158
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=82.74 E-value=2.3 Score=38.41 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=23.3
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEe--cChHHHHHHHHHHh
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFS--AGLADIIEEVLRQK 216 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~S--aG~~~~Ie~vL~~~ 216 (354)
..++.++...+..+++++--++|-| +-+...-...|.+.
T Consensus 71 ~l~~q~v~~~L~~~~e~~~L~~itar~~dl~~iT~~~l~~q 111 (194)
T COG5663 71 ALLAQLVKQVLPSLKEEHRLIYITARKADLTRITYAWLFIQ 111 (194)
T ss_pred HHHHHHHHHHhHHHHhhceeeeeehhhHHHHHHHHHHHHHh
Confidence 4667788888888888874444433 22334444555544
No 159
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=81.65 E-value=2.5 Score=37.93 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=29.8
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecCh-HHHHHHHHHHh
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGL-ADIIEEVLRQK 216 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~-~~~Ie~vL~~~ 216 (354)
.+.|.|++.+.|+.|+++|++++++|-.. .+....+|+..
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l 83 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLL 83 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHT
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhc
Confidence 58999999999999999999999999654 57999999876
No 160
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=81.17 E-value=1.8 Score=40.99 Aligned_cols=65 Identities=20% Similarity=0.109 Sum_probs=37.0
Q ss_pred CC-ceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEE-cCCChHHHHHHHHHHhc
Q 018557 282 NR-TNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYL-NDAPMWEVVELVSQLCS 350 (354)
Q Consensus 282 ~r-~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v-~d~t~~~~~~ll~~i~~ 350 (354)
+. .+++++|||.||+.|++ .++.-++.|-..+.+.+.+... +-+.|.+ ....=+.+-..|+++++
T Consensus 205 ~~~~~v~~~GDs~NDi~m~~--~ag~~vam~NA~~~~k~~~~~~--a~~~v~~~~~~~~~Gv~~~l~~~~~ 271 (273)
T PRK00192 205 QDGVETIALGDSPNDLPMLE--AADIAVVVPGPDGPNPPLLPGI--ADGEFILASAPGPEGWAEAINKLLS 271 (273)
T ss_pred cCCceEEEEcCChhhHHHHH--hCCeeEEeCCCCCCCcccCccc--cCCceEEecCCCcHHHHHHHHHHHh
Confidence 35 79999999999999998 4555556555554444222222 1134443 33333444555555443
No 161
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=80.96 E-value=6.6 Score=38.43 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=16.5
Q ss_pred ceEEEEcCCC-CChhcccCC
Q 018557 284 TNVLLLGDHI-GDLGMSDGL 302 (354)
Q Consensus 284 ~~vI~iGDg~-~Dl~ma~gl 302 (354)
.++++|||.. +|+.++...
T Consensus 264 ~~~~mIGD~~~tDI~ga~~~ 283 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQNY 283 (321)
T ss_pred heEEEEcCChhhhhhhHHhC
Confidence 5899999998 999998743
No 162
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=80.78 E-value=2.4 Score=46.74 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=39.6
Q ss_pred CceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCChH
Q 018557 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMW 339 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~~ 339 (354)
+.-|-+.|||.||-.+.+ .+|..+|.|.--..+- +++-|++++||.=-.
T Consensus 705 GaiVaVTGDGVNDsPALK--KADIGVAMGiaGSDvs------KqAADmILLDDNFAS 753 (1019)
T KOG0203|consen 705 GAIVAVTGDGVNDSPALK--KADIGVAMGIAGSDVS------KQAADMILLDDNFAS 753 (1019)
T ss_pred CcEEEEeCCCcCCChhhc--ccccceeeccccchHH------HhhcceEEecCcchh
Confidence 446778999999999998 8888899998876666 567899999886433
No 163
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=80.28 E-value=2.1 Score=44.90 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=32.7
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.++||.+|=|+.|++-||+.+.+++-+.--...+-++. |.
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EA-GV 486 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA-GV 486 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHh-Cc
Confidence 56899999999999999999999998886665555555 64
No 164
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=80.02 E-value=0.94 Score=41.22 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=17.2
Q ss_pred CCceEEEEcCCCCChhccc
Q 018557 282 NRTNVLLLGDHIGDLGMSD 300 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~ 300 (354)
...+++++|||.||+.|.+
T Consensus 194 ~~~~vi~~GD~~NDi~ml~ 212 (221)
T TIGR02463 194 PDVKTLGLGDGPNDLPLLE 212 (221)
T ss_pred CCCcEEEECCCHHHHHHHH
Confidence 3578999999999999987
No 165
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=78.90 E-value=1.7 Score=40.91 Aligned_cols=61 Identities=10% Similarity=0.160 Sum_probs=37.1
Q ss_pred CCceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCChHHHHHHHHHHhc
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQLCS 350 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~~~~~~ll~~i~~ 350 (354)
+..+++.+|||.||+.|.+ .++.-++.|--.+.+.+. .++..|+ .+-.=+.|-..|++++.
T Consensus 203 ~~~~v~afGD~~NDi~Ml~--~ag~~vAm~Na~~~vK~~----A~~~~v~--~~n~edGva~~l~~~~~ 263 (272)
T PRK15126 203 SLADCMAFGDAMNDREMLG--SVGRGFIMGNAMPQLRAE----LPHLPVI--GHCRNQAVSHYLTHWLD 263 (272)
T ss_pred CHHHeEEecCCHHHHHHHH--HcCCceeccCChHHHHHh----CCCCeec--CCCcchHHHHHHHHHhc
Confidence 3468999999999999998 455556665544444422 2222232 23334556666666553
No 166
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=78.60 E-value=1.1 Score=42.46 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCChhcccCCCccceeeeeccc
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLKYETRISVGFLN 314 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~ 314 (354)
+..+++.+|||.||+.|.+ .++.-++.|-.+
T Consensus 205 ~~~~viafGDs~NDi~Ml~--~ag~gvAM~~~~ 235 (271)
T PRK03669 205 TRPTTLGLGDGPNDAPLLD--VMDYAVVVKGLN 235 (271)
T ss_pred CCceEEEEcCCHHHHHHHH--hCCEEEEecCCC
Confidence 3578999999999999998 556666766444
No 167
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=78.52 E-value=2.6 Score=39.48 Aligned_cols=62 Identities=18% Similarity=0.032 Sum_probs=35.0
Q ss_pred CceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCChHHHHHHHHHH
Q 018557 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQL 348 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~~~~~~ll~~i 348 (354)
..+++++|||.||+.|.+ .++.-++.|--.+.+++ +..+..+-+. +.....-+.+-..|+++
T Consensus 194 ~~~~~a~GD~~ND~~Ml~--~ag~~vam~Na~~~~~~-lk~~~~a~~~-vt~~~~~dGva~~l~~~ 255 (256)
T TIGR01486 194 AIKVVGLGDSPNDLPLLE--VVDLAVVVPGPNGPNVS-LKPGDPGSFL-LTPAPGPEGWREALEHL 255 (256)
T ss_pred CceEEEEcCCHhhHHHHH--HCCEEEEeCCCCCCccc-cCccCCCcEE-EcCCCCcHHHHHHHHHh
Confidence 578999999999999998 45555555544321122 1221101112 34455556666666554
No 168
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=78.30 E-value=1 Score=40.87 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCChhcccCCCccceeeeeccchHHH
Q 018557 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIE 318 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~e 318 (354)
..+++++|||.||+.|.+ .++..++.|--.+.+.
T Consensus 163 ~~~~i~iGDs~ND~~ml~--~ag~~vam~na~~~~k 196 (215)
T TIGR01487 163 PEEVAAIGDSENDIDLFR--VVGFKVAVANADDQLK 196 (215)
T ss_pred HHHEEEECCCHHHHHHHH--hCCCeEEcCCccHHHH
Confidence 357999999999999998 5555556554444443
No 169
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=78.29 E-value=1.5 Score=40.49 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCChhcccCCCccceeeeeccchHHH
Q 018557 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIE 318 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~e 318 (354)
...++++||+.||+.|.. .++.-++.|-..+.+.
T Consensus 175 ~~~~i~~GD~~nD~~ml~--~~~~~iav~na~~~~k 208 (236)
T TIGR02471 175 LEQILVAGDSGNDEEMLR--GLTLGVVVGNHDPELE 208 (236)
T ss_pred HHHEEEEcCCccHHHHHc--CCCcEEEEcCCcHHHH
Confidence 458999999999999998 4555556555444443
No 170
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=77.48 E-value=3.1 Score=45.07 Aligned_cols=59 Identities=17% Similarity=0.332 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHH----HHHHHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChH
Q 018557 136 SPTVPLEEKTKLMEE----WWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 136 d~~is~~Ek~~~m~e----w~~~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~ 206 (354)
+..+|+-++.+.|.+ ..++..+||+--|+ ++ .|.+.++..++.|+..||++..++|---
T Consensus 623 ~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGV-ED-----------kLQ~dVk~tLElLRNAgikiWMLTGDKl 685 (1051)
T KOG0210|consen 623 AAKLSISDRDQKMANVVERYLERDLELLGLTGV-ED-----------KLQDDVKPTLELLRNAGIKIWMLTGDKL 685 (1051)
T ss_pred hhhCccchHHHHHHHHHHHHHHhhhHHhcccCh-HH-----------HHhhhhHhHHHHHhhcCcEEEEEcCcch
Confidence 456777777666654 44455555554443 22 3445566789999999999999998654
No 171
>PTZ00445 p36-lilke protein; Provisional
Probab=77.46 E-value=4.7 Score=37.67 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhcCCCcEEEEEecccccccccccCccccc--hHHHhhccChhHHHHHHHHHH
Q 018557 68 QSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQS--SHGLLQQGNPEYDAKRQALYE 128 (354)
Q Consensus 68 ~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds--~~~il~~~~~e~~~~~~~L~~ 128 (354)
+.-..-.+.+++.|.+ .|++|||-||...|..|-..+. ...++....|++..-+.+|.+
T Consensus 29 ~~~~~~v~~L~~~GIk--~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIK--VIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCe--EEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 3333344566677775 6899999999997777765553 344555445776666555554
No 172
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=77.00 E-value=8 Score=43.23 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=20.7
Q ss_pred HHHHHHHH-HhCCCCEEEEecChHHHHHHHHH
Q 018557 184 VVKLFEFL-EERDIPVLIFSAGLADIIEEVLR 214 (354)
Q Consensus 184 ~~efl~~L-~~~gipv~I~SaG~~~~Ie~vL~ 214 (354)
+.+.|+.| ++.|+.++|+||=-...++..+.
T Consensus 621 ~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~ 652 (854)
T PLN02205 621 SIDILNTLCRDKNNMVFIVSARSRKTLADWFS 652 (854)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhC
Confidence 44455554 56678888888877777766654
No 173
>PLN03017 trehalose-phosphatase
Probab=76.97 E-value=2.7 Score=42.35 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHhc-CCCcEEEEEecccccccc
Q 018557 66 DPQSLQNKISQIRMA-GPSKLQVIADFDGTLTRY 98 (354)
Q Consensus 66 d~~~~~~k~~~~~~~-g~~kl~Vi~DFDgTIT~~ 98 (354)
-|..+ ..+.++++. ..+++.|++||||||+.+
T Consensus 93 ~psal-~~~~~~~~~~~~k~~llflD~DGTL~Pi 125 (366)
T PLN03017 93 HPSAL-EMFEQIMEASRGKQIVMFLDYDGTLSPI 125 (366)
T ss_pred CChHH-HHHHHHHHHhcCCCeEEEEecCCcCcCC
Confidence 44444 345556543 456899999999999965
No 174
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=76.91 E-value=1.4 Score=41.10 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.6
Q ss_pred CceEEEEcCCCCChhcccC
Q 018557 283 RTNVLLLGDHIGDLGMSDG 301 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~g 301 (354)
...++++||+.||..|++.
T Consensus 183 ~~~~i~iGD~~~D~~~~~~ 201 (244)
T TIGR00685 183 GISPVYLGDDITDEDAFRV 201 (244)
T ss_pred CCceEEEcCCCcHHHHHHH
Confidence 3579999999999999873
No 175
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=76.66 E-value=2.1 Score=45.75 Aligned_cols=32 Identities=38% Similarity=0.585 Sum_probs=18.9
Q ss_pred cHHHHHHHHHhCCCCEEEEec---ChHHHHHHHHH
Q 018557 183 GVVKLFEFLEERDIPVLIFSA---GLADIIEEVLR 214 (354)
Q Consensus 183 G~~efl~~L~~~gipv~I~Sa---G~~~~Ie~vL~ 214 (354)
|+..|+...+++|++++-+|| |-.+.....|+
T Consensus 562 GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~ 596 (738)
T KOG2116|consen 562 GVAKLYTKIKENGYKILYLSARAIGQADSTRQYLK 596 (738)
T ss_pred hHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHH
Confidence 455566666677777777775 33344444444
No 176
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=76.06 E-value=3.8 Score=34.98 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=10.7
Q ss_pred EEEEeccccccc
Q 018557 86 QVIADFDGTLTR 97 (354)
Q Consensus 86 ~Vi~DFDgTIT~ 97 (354)
.|++|.||||+.
T Consensus 3 ~i~~DiDGTL~~ 14 (126)
T TIGR01689 3 RLVMDLDNTITL 14 (126)
T ss_pred EEEEeCCCCccc
Confidence 688999999986
No 177
>PLN02887 hydrolase family protein
Probab=75.36 E-value=16 Score=39.14 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=31.6
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.+.+...+.++.|+++|+.++|+||=....+..++++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L 362 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMV 362 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh
Confidence 45666678888999999999999998887888888765
No 178
>PLN02645 phosphoglycolate phosphatase
Probab=74.58 E-value=6.6 Score=38.21 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=33.9
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChH---HHHHHHHHHhcCCCCCcceEEee
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLA---DIIEEVLRQKVHKSFKNVKIVSN 229 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~---~~Ie~vL~~~~g~~~~ni~IvSN 229 (354)
.+-||+.|+++.|+++|++++++|+.-. ..+..-|++. |+....-.|++.
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~l-Gi~~~~~~I~ts 96 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESL-GLNVTEEEIFSS 96 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHC-CCCCChhhEeeh
Confidence 3569999999999999999999998763 2223334543 654333345444
No 179
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=74.26 E-value=7.2 Score=42.56 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCChhcccCCC-ccceeeee
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLK-YETRISVG 311 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~-~d~vlaiG 311 (354)
+...++++||+.||..|.+.+. ....+++|
T Consensus 670 ~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG 700 (726)
T PRK14501 670 PYDFVLAIGDDTTDEDMFRALPETAITVKVG 700 (726)
T ss_pred CCCEEEEECCCCChHHHHHhcccCceEEEEC
Confidence 3468999999999999998542 23344555
No 180
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=73.98 E-value=1.6 Score=40.58 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=17.2
Q ss_pred CCceEEEEcCCCCChhcccC
Q 018557 282 NRTNVLLLGDHIGDLGMSDG 301 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~g 301 (354)
...+++++||+.||+.|.+.
T Consensus 198 ~~~~~i~~GD~~nD~~ml~~ 217 (225)
T TIGR02461 198 GAIESVGLGDSENDFPMFEV 217 (225)
T ss_pred CcccEEEEcCCHHHHHHHHh
Confidence 34589999999999999983
No 181
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=71.52 E-value=3.8 Score=39.45 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCChhcccCCC--ccceeeeecc
Q 018557 284 TNVLLLGDHIGDLGMSDGLK--YETRISVGFL 313 (354)
Q Consensus 284 ~~vI~iGDg~~Dl~ma~gl~--~d~vlaiGfL 313 (354)
.-++++||-.+|-.|.+-+. ....+++|+-
T Consensus 199 ~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~ 230 (266)
T COG1877 199 RFPIFAGDDLTDEDAFAAVNKLDSITVKVGVG 230 (266)
T ss_pred CcceecCCCCccHHHHHhhccCCCceEEecCC
Confidence 46999999999999976442 1234566655
No 182
>PRK10444 UMP phosphatase; Provisional
Probab=70.99 E-value=5.4 Score=37.70 Aligned_cols=36 Identities=6% Similarity=0.240 Sum_probs=27.9
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHH
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLR 214 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~ 214 (354)
.+-||..++++.|+++|+|++++|+....-.+.+.+
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~ 52 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLAN 52 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHH
Confidence 567899999999999999999999877643333333
No 183
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=70.91 E-value=5.2 Score=37.85 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=29.9
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChH---HHHHHHHHHhcCC
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLA---DIIEEVLRQKVHK 219 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~---~~Ie~vL~~~~g~ 219 (354)
+-||..++++.|+++|++++++|+... ..+...|++. |+
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~-g~ 63 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRL-GF 63 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHc-CC
Confidence 678999999999999999999997543 2455556654 54
No 184
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=70.77 E-value=8.1 Score=37.27 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=33.4
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChH---HHHHHHHHHhcC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLA---DIIEEVLRQKVH 218 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~---~~Ie~vL~~~~g 218 (354)
+-.+-||+.|+++.|+++|+|++++|.+-. ..+..-|++..+
T Consensus 22 G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~ 66 (269)
T COG0647 22 GNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGG 66 (269)
T ss_pred CCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcC
Confidence 457889999999999999999999997764 445566666434
No 185
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=69.81 E-value=9.9 Score=36.21 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.0
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecC
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAG 204 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG 204 (354)
.-||+.|+++.|+++|++++++|++
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnn 43 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNN 43 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCC
Confidence 4577888999999999999999874
No 186
>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]
Probab=69.63 E-value=5.3 Score=37.82 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhcCCCc-E-EEEEecccccccccc-cCcc
Q 018557 67 PQSLQNKISQIRMAGPSK-L-QVIADFDGTLTRYFI-NGSR 104 (354)
Q Consensus 67 ~~~~~~k~~~~~~~g~~k-l-~Vi~DFDgTIT~~~~-~g~~ 104 (354)
.+.|.+|....++||... + ++++||||++-.... ||.+
T Consensus 12 ~etL~~kf~~~~~g~~P~sid~~vaDFDgv~yhiSnp~gdk 52 (301)
T KOG2826|consen 12 EETLNEKFENARAGGKPESIDVTVADFDGVLYHISNPNGDK 52 (301)
T ss_pred HHHHHHHHHHHhccCCCcceeEEEeccCceEEEccCCCCCc
Confidence 356889999998886654 3 789999999977644 6554
No 187
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=69.59 E-value=10 Score=35.10 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 183 G~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
+..+.++.|+++|++++++|+-...-+..++++. |.
T Consensus 19 ~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~l-g~ 54 (225)
T TIGR02461 19 PAREALEELKDLGFPIVFVSSKTRAEQEYYREEL-GV 54 (225)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-CC
Confidence 4567888899999999999999888888888776 64
No 188
>PLN02887 hydrolase family protein
Probab=69.49 E-value=2.6 Score=44.97 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCChhcccCCCccceeeeeccchHHHh
Q 018557 282 NRTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIEN 319 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee 319 (354)
+..+|+.+|||.||+.|.+ .++.-++.|--.+.+.+
T Consensus 522 ~~eeviAFGDs~NDIeMLe--~AG~gVAMgNA~eeVK~ 557 (580)
T PLN02887 522 SPDEIMAIGDGENDIEMLQ--LASLGVALSNGAEKTKA 557 (580)
T ss_pred CHHHEEEEecchhhHHHHH--HCCCEEEeCCCCHHHHH
Confidence 3568999999999999998 56666777776666654
No 189
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=68.79 E-value=13 Score=33.71 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 184 VVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 184 ~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.++.|+++|++++|+|+-....+..++++. +.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l-~~ 55 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL-GL 55 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CC
Confidence 567888899999999999999999999999876 53
No 190
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=68.42 E-value=2.4 Score=39.46 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCChhcccCCCccceeeee
Q 018557 283 RTNVLLLGDHIGDLGMSDGLKYETRISVG 311 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl~~d~vlaiG 311 (354)
..+++++|||.||+.|.. .++..++.|
T Consensus 204 ~~~~~~~GD~~nD~~m~~--~~~~~~a~~ 230 (256)
T TIGR00099 204 LEDVIAFGDGMNDIEMLE--AAGYGVAMG 230 (256)
T ss_pred HHHEEEeCCcHHhHHHHH--hCCceeEec
Confidence 468999999999999998 455555655
No 191
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=68.13 E-value=7 Score=37.36 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=38.8
Q ss_pred cCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChHHH
Q 018557 162 GGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLADI 208 (354)
Q Consensus 162 ~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~ 208 (354)
.|++.+...++|.......-||+.||+++..++|..++-+|.=-..-
T Consensus 105 k~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~ 151 (274)
T COG2503 105 KGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQEN 151 (274)
T ss_pred CCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhc
Confidence 45666667777777778899999999999999999999999766544
No 192
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=68.13 E-value=3.2 Score=37.09 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=30.2
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..++|. =++.|.+.||+++|+|+=...+++...+.. |+
T Consensus 37 nv~DG~--Gik~l~~~Gi~vAIITGr~s~ive~Ra~~L-GI 74 (170)
T COG1778 37 NVRDGH--GIKLLLKSGIKVAIITGRDSPIVEKRAKDL-GI 74 (170)
T ss_pred eccCcH--HHHHHHHcCCeEEEEeCCCCHHHHHHHHHc-CC
Confidence 345554 356677799999999999999999998876 75
No 193
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=67.83 E-value=12 Score=35.06 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=26.7
Q ss_pred cccHHHHHHHHHhCCCCEEEEecCh---HHHHHHHHHHhcCC
Q 018557 181 RDGVVKLFEFLEERDIPVLIFSAGL---ADIIEEVLRQKVHK 219 (354)
Q Consensus 181 rpG~~efl~~L~~~gipv~I~SaG~---~~~Ie~vL~~~~g~ 219 (354)
-||..++++.|+++|++++++|++- ...+...|++. |.
T Consensus 19 i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~-g~ 59 (249)
T TIGR01457 19 IPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASF-DI 59 (249)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc-CC
Confidence 4578888888898999999998622 34555566654 54
No 194
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=67.77 E-value=2.4 Score=32.10 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=19.0
Q ss_pred CceEEEEcCC-CCChhcccCCCcc
Q 018557 283 RTNVLLLGDH-IGDLGMSDGLKYE 305 (354)
Q Consensus 283 r~~vI~iGDg-~~Dl~ma~gl~~d 305 (354)
..++++|||+ .+|+.+++.+...
T Consensus 21 ~~~~~~VGD~~~~Di~~a~~~G~~ 44 (75)
T PF13242_consen 21 PSRCVMVGDSLETDIEAAKAAGID 44 (75)
T ss_dssp GGGEEEEESSTTTHHHHHHHTTSE
T ss_pred HHHEEEEcCCcHhHHHHHHHcCCc
Confidence 4689999999 9999999855443
No 195
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=67.24 E-value=13 Score=35.10 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=32.1
Q ss_pred cccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 181 rpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.++..+.++.|+++|++++|+|+-....+...+++. +.
T Consensus 23 ~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l-~l 60 (273)
T PRK00192 23 YEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKEL-GL 60 (273)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CC
Confidence 355677889999999999999999988898888876 54
No 196
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=67.09 E-value=16 Score=36.25 Aligned_cols=136 Identities=10% Similarity=-0.016 Sum_probs=68.0
Q ss_pred CccccccccchhhhhhhccCC--CceEECC-hhHHHHHHHHHHhcCCCcEEEEEecccccccccccCccc--cchHHHhh
Q 018557 39 SPRVWNRCCSAQNKMENQDLS--KFTIKGD-PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRG--QSSHGLLQ 113 (354)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~--~~v~i~d-~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~~--ds~~~il~ 113 (354)
.+++-. -|....|++.+.+ +.|.+.| |+.+.+||.+...++.. |.-....+|.+. ...+.++.
T Consensus 182 ~~l~gL--~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~----------~~~~~~~~~~~p~~~~l~~~~~ 249 (333)
T PRK00927 182 ARVMGL--DGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSER----------LREIRYDLPNKPEVSNLLTIYS 249 (333)
T ss_pred ccccCC--CCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCc----------ccccccCCCCCCccccHHHHHH
Confidence 444443 2344589977553 7788887 77899999886543322 211111122222 23344555
Q ss_pred ccChhHHHHHHHHHHhhCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHH
Q 018557 114 QGNPEYDAKRQALYEYYHPLEFSPTVPLEEKT----KLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFE 189 (354)
Q Consensus 114 ~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~----~~m~ew~~~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~ 189 (354)
-+.. +.+.++.+.|... .+...+.- ..+.+.+.-..+-..+..-..+.+.+++.++.-.-|.=+.+.++
T Consensus 250 ~~~~---~~~eel~~~~~~g----~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~~~a~~~a~~~l~ 322 (333)
T PRK00927 250 ALSG---ESIEELEAEYEAG----GKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGAEKARAVASKTLK 322 (333)
T ss_pred HhCC---CCHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 2234445555432 33322222 33334444444333333345666777776655556666666666
Q ss_pred HHHh
Q 018557 190 FLEE 193 (354)
Q Consensus 190 ~L~~ 193 (354)
..++
T Consensus 323 ~v~~ 326 (333)
T PRK00927 323 EVRE 326 (333)
T ss_pred HHHH
Confidence 5554
No 197
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=67.05 E-value=13 Score=34.44 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=39.0
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee-eEEcCCCc
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR-MVFDKDGH 238 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~-~~fd~dG~ 238 (354)
+.+...+.++.|+++|++++|+||-....+..++++. +...+ -|.+|- +.++.+|+
T Consensus 17 i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~-~~~~~--~I~~NGa~i~~~~~~ 73 (256)
T TIGR00099 17 ISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKEL-GLDTP--FITANGAAVIDDQGE 73 (256)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CCCCC--EEEcCCcEEECCCCC
Confidence 4556667888899999999999999988888888875 54211 344453 23444344
No 198
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=66.45 E-value=13 Score=33.67 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=31.7
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
+.|...+.++.|+++|++++|+||-....+..++++. +.
T Consensus 19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l-~~ 57 (215)
T TIGR01487 19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLI-GT 57 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHh-CC
Confidence 4556667888899999999999999888888887765 54
No 199
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=65.81 E-value=11 Score=34.42 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccccccc
Q 018557 70 LQNKISQIRMAGPSKLQVIADFDGTLTR 97 (354)
Q Consensus 70 ~~~k~~~~~~~g~~kl~Vi~DFDgTIT~ 97 (354)
|.+.-+.+ .|...+.|-||.|-|+.-
T Consensus 51 vaqI~~SL--eG~~Pi~VsFDIDDTvLF 76 (237)
T COG3700 51 VAQIENSL--EGRPPIAVSFDIDDTVLF 76 (237)
T ss_pred HHHHHhhh--cCCCCeeEeeccCCeeEe
Confidence 44443333 578889999999999975
No 200
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=65.11 E-value=11 Score=36.64 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=35.0
Q ss_pred HHHHhcCCcccccHHHHHHHHHhCCCCEEEEecChH---HHHHHHHHHh
Q 018557 171 KSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGLA---DIIEEVLRQK 216 (354)
Q Consensus 171 e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~---~~Ie~vL~~~ 216 (354)
+.+.....+.-||+.+|+++++++|+.++++|+=.. .....-|++.
T Consensus 137 ~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~ka 185 (275)
T TIGR01680 137 EFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKA 185 (275)
T ss_pred HHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHc
Confidence 445555678899999999999999999999998664 3344444444
No 201
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=64.21 E-value=3.4 Score=36.99 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=12.3
Q ss_pred cEEEEEeccccccc
Q 018557 84 KLQVIADFDGTLTR 97 (354)
Q Consensus 84 kl~Vi~DFDgTIT~ 97 (354)
--.|++|+|||||.
T Consensus 21 ikli~~D~Dgtl~~ 34 (183)
T PRK09484 21 IRLLICDVDGVFSD 34 (183)
T ss_pred ceEEEEcCCeeeec
Confidence 45899999999997
No 202
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=63.78 E-value=27 Score=31.30 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=55.8
Q ss_pred EEEEecccccccccccCccc-----cchH-HHhhccC------hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHH
Q 018557 86 QVIADFDGTLTRYFINGSRG-----QSSH-GLLQQGN------PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWG 153 (354)
Q Consensus 86 ~Vi~DFDgTIT~~~~~g~~~-----ds~~-~il~~~~------~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~ 153 (354)
+||||.|+||-.++.+-.-. .... .+.++.+ |+....+++|.++=..+-+...-+..+.++
T Consensus 5 lvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~------- 77 (169)
T PF12689_consen 5 LVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWAR------- 77 (169)
T ss_dssp EEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHH-------
T ss_pred EEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHH-------
Confidence 68999999999986421100 1111 3443433 777778888887544443333222222222
Q ss_pred HHHHHHHhcCCC-----------------------HHHHHHHHHhcCCcc-----cccHHHHHHHHHhCCCCEEEEecCh
Q 018557 154 KTHGLLIEGGLT-----------------------YDAIKKSVSNALIAF-----RDGVVKLFEFLEERDIPVLIFSAGL 205 (354)
Q Consensus 154 ~~~~ll~~~glt-----------------------~~~i~e~v~~~~i~L-----rpG~~efl~~L~~~gipv~I~SaG~ 205 (354)
++|...++. ...+.++.++.+++. -+.-..-.+..++.|+.++.+-.|+
T Consensus 78 ---~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Gl 154 (169)
T PF12689_consen 78 ---ELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGL 154 (169)
T ss_dssp ---HHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS-
T ss_pred ---HHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCC
Confidence 233333444 344444444444333 3344445566677888888888887
Q ss_pred H-HHHHHHHHH
Q 018557 206 A-DIIEEVLRQ 215 (354)
Q Consensus 206 ~-~~Ie~vL~~ 215 (354)
. ...+.-|++
T Consensus 155 t~~~~~~gL~~ 165 (169)
T PF12689_consen 155 TWDEFERGLEK 165 (169)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 5 555555554
No 203
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=63.55 E-value=3.3 Score=36.53 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=9.7
Q ss_pred EEEEecccccccc
Q 018557 86 QVIADFDGTLTRY 98 (354)
Q Consensus 86 ~Vi~DFDgTIT~~ 98 (354)
+.++|+||||...
T Consensus 2 ia~fD~DgTLi~~ 14 (159)
T PF08645_consen 2 IAFFDLDGTLIKT 14 (159)
T ss_dssp EEEE-SCTTTEE-
T ss_pred EEEEeCCCCccCC
Confidence 4689999999983
No 204
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=63.06 E-value=4.5 Score=38.10 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=17.0
Q ss_pred CCceEEEEcCCCCChhcccC
Q 018557 282 NRTNVLLLGDHIGDLGMSDG 301 (354)
Q Consensus 282 ~r~~vI~iGDg~~Dl~ma~g 301 (354)
+..+++.+|||-||++|..+
T Consensus 180 ~~~~vl~aGDSgND~~mL~~ 199 (247)
T PF05116_consen 180 PPEQVLVAGDSGNDLEMLEG 199 (247)
T ss_dssp -GGGEEEEESSGGGHHHHCC
T ss_pred CHHHEEEEeCCCCcHHHHcC
Confidence 35689999999999999874
No 205
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=61.72 E-value=17 Score=31.66 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=33.0
Q ss_pred cHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeee
Q 018557 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRM 231 (354)
Q Consensus 183 G~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~ 231 (354)
+..++=+.|++.|++++|+.+.....+..++++. +. ..|++|.-
T Consensus 54 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~----~~V~~~~~ 97 (165)
T PF00875_consen 54 SLADLQESLRKLGIPLLVLRGDPEEVLPELAKEY-GA----TAVYFNEE 97 (165)
T ss_dssp HHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHH-TE----SEEEEE--
T ss_pred HHHHHHHHHHhcCcceEEEecchHHHHHHHHHhc-Cc----CeeEeccc
Confidence 3445667788899999999999999999888876 43 27888864
No 206
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=59.64 E-value=18 Score=32.49 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=24.2
Q ss_pred CCceEECChhHHHHHHHHHHhcCCCcEEEEEeccccccc
Q 018557 59 SKFTIKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTR 97 (354)
Q Consensus 59 ~~~v~i~d~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~ 97 (354)
.|++++++-..+--....+++.|.+ .||+|+|.|||.
T Consensus 18 ~P~l~V~si~~I~~~~~~Lk~~Gik--~li~DkDNTL~~ 54 (168)
T PF09419_consen 18 LPHLYVPSIRDIDFEANHLKKKGIK--ALIFDKDNTLTP 54 (168)
T ss_pred CCCEEcCChhhCCcchhhhhhcCce--EEEEcCCCCCCC
Confidence 5666666644443222236677766 478999999998
No 207
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=58.99 E-value=18 Score=32.72 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=36.8
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
+-...|.+.++++.++++|+.++|+|.+...-|..+.++. |+
T Consensus 44 ~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l-~v 85 (175)
T COG2179 44 NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL-GV 85 (175)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc-CC
Confidence 4577888999999999999999999999999999888865 64
No 208
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=58.83 E-value=68 Score=31.85 Aligned_cols=42 Identities=12% Similarity=-0.073 Sum_probs=28.4
Q ss_pred CCCccccccccchhhhhhhccCCCceEECC-hhHHHHHHHHHHhcCCC
Q 018557 37 TSSPRVWNRCCSAQNKMENQDLSKFTIKGD-PQSLQNKISQIRMAGPS 83 (354)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~d-~~~~~~k~~~~~~~g~~ 83 (354)
.+.++|...+ ..|++.+.+ .|.+.| |+.+++||.++..++..
T Consensus 191 ~~~~l~gLdg----~KMSKS~~n-~I~L~D~p~~I~kKI~ka~Td~~~ 233 (332)
T PRK12556 191 EGAILPGLDG----RKMSKSYGN-VIPLFAEQEKLRKLIFKIKTDSSL 233 (332)
T ss_pred ccccccCCCC----CCCCCCCCC-cccccCCHHHHHHHHHHhccCCCc
Confidence 3555665432 489877643 566665 78889999998877643
No 209
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=57.99 E-value=24 Score=34.73 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 184 VVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 184 ~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.++.|+++||+++++||-...-++.++++. +.
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~L-gl 57 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQL-RL 57 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-CC
Confidence 456788899999999999999988888888765 64
No 210
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=57.89 E-value=25 Score=32.73 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 181 rpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+...+.++.|+++|++++|+||=....+..++++. +.
T Consensus 22 ~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~ 59 (270)
T PRK10513 22 SPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKEL-HM 59 (270)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHh-CC
Confidence 344556788899999999999999888888888875 54
No 211
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=57.65 E-value=6.1 Score=36.58 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=15.4
Q ss_pred CceEEEEcCCCCChhcccCC
Q 018557 283 RTNVLLLGDHIGDLGMSDGL 302 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl 302 (354)
...++|+||-.+|-.|..-+
T Consensus 184 ~~~~l~~GDD~tDE~~f~~~ 203 (235)
T PF02358_consen 184 PDFVLYIGDDRTDEDAFRAL 203 (235)
T ss_dssp ---EEEEESSHHHHHHHHTT
T ss_pred cceeEEecCCCCCHHHHHHH
Confidence 35799999999999998754
No 212
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=57.53 E-value=14 Score=31.01 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=13.2
Q ss_pred CceEEEEcCCCCChhcc
Q 018557 283 RTNVLLLGDHIGDLGMS 299 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma 299 (354)
..+++|+||+..|+.-.
T Consensus 108 p~~~l~igDs~~n~~~~ 124 (128)
T TIGR01681 108 PKSILFVDDRPDNNEEV 124 (128)
T ss_pred cceEEEECCCHhHHHHH
Confidence 46799999999886544
No 213
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=57.26 E-value=6 Score=34.96 Aligned_cols=13 Identities=38% Similarity=0.360 Sum_probs=11.5
Q ss_pred EEEEecccccccc
Q 018557 86 QVIADFDGTLTRY 98 (354)
Q Consensus 86 ~Vi~DFDgTIT~~ 98 (354)
.|+||.|||||..
T Consensus 3 ~i~fDktGTLt~~ 15 (215)
T PF00702_consen 3 AICFDKTGTLTQG 15 (215)
T ss_dssp EEEEECCTTTBES
T ss_pred EEEEecCCCcccC
Confidence 5899999999993
No 214
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=56.64 E-value=53 Score=34.68 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=49.0
Q ss_pred HHhcCCCHHHHHHHHHh--cCCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCC
Q 018557 159 LIEGGLTYDAIKKSVSN--ALIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKD 236 (354)
Q Consensus 159 l~~~glt~~~i~e~v~~--~~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~d 236 (354)
....|+..++++ +.+. .+.-+.+=-.|-++.++.-+ +.+++|+..+-++|..|+.++|.+ .|+.-++.. ..
T Consensus 109 v~f~Gl~~~~~~-v~ravLPkf~~~dv~~e~~~v~~~~~-~~~vv~~~PrvMve~Flkeyl~~d----~V~g~El~~-~~ 181 (525)
T PLN02588 109 LSFFGVKKESFR-AGKAVLPKYFLEDVGLEMFQVLKRGG-KRVGVSDLPQVMIDVFLRDYLEIE----VVVGRDMKM-VG 181 (525)
T ss_pred HhhcCCcHHHhh-hHHhhccHHHHhhcCHHHHHHHhhcC-cEEEEecCCHHHHHHHHHHhcCcc----eEeeeeEEE-ee
Confidence 345788887655 3221 01111111123334444434 677788888999999999998853 688888877 46
Q ss_pred CcEEecC
Q 018557 237 GHLVSFK 243 (354)
Q Consensus 237 G~l~gf~ 243 (354)
|..+|+-
T Consensus 182 g~~tG~~ 188 (525)
T PLN02588 182 GYYLGIM 188 (525)
T ss_pred eEEEEEE
Confidence 8888875
No 215
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=55.99 E-value=3.8 Score=36.62 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=16.5
Q ss_pred CceEEEEcCCCCChhccc
Q 018557 283 RTNVLLLGDHIGDLGMSD 300 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~ 300 (354)
...++++||+.||+.|+.
T Consensus 179 ~~~~~~~GD~~nD~~~~~ 196 (204)
T TIGR01484 179 RDEILAFGDSGNDEEMFE 196 (204)
T ss_pred HHHEEEEcCCHHHHHHHH
Confidence 467999999999999987
No 216
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=54.77 E-value=30 Score=31.13 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=30.8
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcC
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVH 218 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g 218 (354)
+.+...+.++.|+++|++++++||-....+..+++.. +
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l-~ 53 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARALAKLI-G 53 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh-C
Confidence 4455566788899999999999998888888887766 5
No 217
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=54.65 E-value=31 Score=31.21 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
+.|...+.++.|+++|++++|+||=....+..++++. +.
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~ 59 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLI-GT 59 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh-CC
Confidence 3444556777889999999999999988888888765 54
No 218
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=54.26 E-value=15 Score=32.96 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=6.6
Q ss_pred eEEEEcCC-CCChhcc
Q 018557 285 NVLLLGDH-IGDLGMS 299 (354)
Q Consensus 285 ~vI~iGDg-~~Dl~ma 299 (354)
++++|||= .||+-|+
T Consensus 138 eiavIGDrl~TDVl~g 153 (168)
T PF09419_consen 138 EIAVIGDRLFTDVLMG 153 (168)
T ss_pred hEEEEcchHHHHHHHh
Confidence 44555543 2444443
No 219
>PLN02423 phosphomannomutase
Probab=53.99 E-value=8.2 Score=36.24 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=17.2
Q ss_pred CCceEEEEcC----CCCChhccc
Q 018557 282 NRTNVLLLGD----HIGDLGMSD 300 (354)
Q Consensus 282 ~r~~vI~iGD----g~~Dl~ma~ 300 (354)
+...++++|| +.||++|.+
T Consensus 199 ~~~e~~aFGD~~~~~~ND~eMl~ 221 (245)
T PLN02423 199 DFDEIHFFGDKTYEGGNDHEIFE 221 (245)
T ss_pred CcCeEEEEeccCCCCCCcHHHHh
Confidence 5679999999 899999987
No 220
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=53.61 E-value=32 Score=32.01 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=36.3
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
-.+.+-..+.++.++++|++++|+||-.-..+..++++. +.
T Consensus 19 ~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l-~~ 59 (264)
T COG0561 19 KTISPETKEALARLREKGVKVVLATGRPLPDVLSILEEL-GL 59 (264)
T ss_pred CccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc-CC
Confidence 347888899999999999999999999999999999876 54
No 221
>PTZ00445 p36-lilke protein; Provisional
Probab=53.53 E-value=29 Score=32.51 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=32.0
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChH---------------HHHHHHHHHh
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLA---------------DIIEEVLRQK 216 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~---------------~~Ie~vL~~~ 216 (354)
.++|.|.+|+..|++.||+++|+|=+-. .+|+..|+.-
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s 127 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKS 127 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhc
Confidence 4799999999999999999999985544 3788888854
No 222
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=53.04 E-value=7 Score=37.22 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=13.5
Q ss_pred cEEEEEecccccccc
Q 018557 84 KLQVIADFDGTLTRY 98 (354)
Q Consensus 84 kl~Vi~DFDgTIT~~ 98 (354)
++.|++||||||+..
T Consensus 14 ~~li~~D~DGTLl~~ 28 (266)
T PRK10187 14 NYAWFFDLDGTLAEI 28 (266)
T ss_pred CEEEEEecCCCCCCC
Confidence 689999999999984
No 223
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=52.34 E-value=88 Score=31.03 Aligned_cols=128 Identities=12% Similarity=0.081 Sum_probs=61.9
Q ss_pred hhhhhccCCCceEE-CChhHHHHHHHHHHhcCCCcEEEEEecccccccccccCcc-ccchHHHhhccChhHHHHHHHHHH
Q 018557 51 NKMENQDLSKFTIK-GDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSR-GQSSHGLLQQGNPEYDAKRQALYE 128 (354)
Q Consensus 51 ~~~~~~~~~~~v~i-~d~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~-~ds~~~il~~~~~e~~~~~~~L~~ 128 (354)
..|++.+.+ .|.+ -+|+.+.+||.+...++. + ++ +...|.+ ......++.-+.++ .+...++.+
T Consensus 195 ~KMSKS~~~-~I~L~D~pe~I~kKI~~A~td~~-~----------~~-~~~~~~~~~~~l~~~~~~f~~~-~~~~e~l~~ 260 (333)
T PRK12282 195 AKMSKSLGN-AIYLSDDADTIKKKVMSMYTDPN-H----------IR-VEDPGKVEGNVVFTYLDAFDPD-KAEVAELKA 260 (333)
T ss_pred CcCCCCCCC-eeeeeCCHHHHHHHHHhCcCCCC-C----------cc-CCCCCCCCcChHHHHHHHhCCC-CchHHHHHH
Confidence 578877654 4555 567889999987655431 1 22 1223333 24556666665432 244566677
Q ss_pred hhCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHh
Q 018557 129 YYHPLEFSPTVPLEEK-TKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEE 193 (354)
Q Consensus 129 ~y~p~E~d~~is~~Ek-~~~m~ew~~~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~ 193 (354)
.|...++.+ ..+.+. ...+.+......+-..+.--..+++.+++..+.-.-|.-+.+.++..++
T Consensus 261 ~y~~g~~~~-~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~~ka~~~A~~~~~~v~~ 325 (333)
T PRK12282 261 HYQRGGLGD-VKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGSEKAREVAAQTLSEVKD 325 (333)
T ss_pred HHhcCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776544332 111111 1223333322222111111235556666655545555555555555443
No 224
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=52.25 E-value=33 Score=31.82 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 181 rpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.|...+.++.|+++|++++|+||=....+..++++. +.
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l-~~ 59 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFYQAL-AL 59 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc-CC
Confidence 344456777899999999999999888888888876 54
No 225
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=51.21 E-value=24 Score=31.41 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=30.8
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHH
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQ 215 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~ 215 (354)
+.+.+.+.++.|+++|++++|+||-....++..++.
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 446667788889999999999999999999988876
No 226
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=51.03 E-value=6.8 Score=36.87 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=12.1
Q ss_pred cEEEEEecccccc
Q 018557 84 KLQVIADFDGTLT 96 (354)
Q Consensus 84 kl~Vi~DFDgTIT 96 (354)
+.+++||||+|++
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 6789999999999
No 227
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=50.65 E-value=32 Score=30.70 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
+.|...+.++.|+++|++++|+||=....+..++++. +.
T Consensus 16 i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~-~~ 54 (254)
T PF08282_consen 16 ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKEL-GI 54 (254)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHT-TH
T ss_pred eCHHHHHHHHhhcccceEEEEEccCcccccccccccc-cc
Confidence 4455667788889999999999999988999999865 53
No 228
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=50.02 E-value=31 Score=35.02 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=30.8
Q ss_pred cHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee
Q 018557 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR 230 (354)
Q Consensus 183 G~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~ 230 (354)
++.+|=+.|++.|++++|..+...+++..++++. +. ..||+|.
T Consensus 62 sL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~-~~----~~V~~~~ 104 (429)
T TIGR02765 62 SLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKEL-GV----RTVFLHQ 104 (429)
T ss_pred HHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHh-CC----CEEEEec
Confidence 4445666678888888888888888888877765 43 2677773
No 229
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=49.50 E-value=41 Score=31.31 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 184 VVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 184 ~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.++.|+++|++++++||-....+..++++. +.
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~-~~ 55 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKEL-GL 55 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CC
Confidence 567888899999999999998888888988876 54
No 230
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=49.45 E-value=10 Score=32.38 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.1
Q ss_pred CceEEEEcCCCCChhcccCC
Q 018557 283 RTNVLLLGDHIGDLGMSDGL 302 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl 302 (354)
..+++||||+..|+.+|+..
T Consensus 118 ~~e~i~IGDs~~Di~~A~~~ 137 (147)
T TIGR01656 118 ASRSLVVGDRLRDLQAARNA 137 (147)
T ss_pred hHHEEEEcCCHHHHHHHHHC
Confidence 46799999999999999743
No 231
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=49.39 E-value=35 Score=29.11 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=36.0
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHH---------------HHHHHHHHhcCCCCCcceEEeee
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLAD---------------IIEEVLRQKVHKSFKNVKIVSNR 230 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~---------------~Ie~vL~~~~g~~~~ni~IvSN~ 230 (354)
.+.+++.+.++.++++|+.++++||=... .+...|+++ ++.+. +|+-..
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~-~ipYd--~l~~~k 87 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQH-NVPYD--EIYVGK 87 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHc-CCCCc--eEEeCC
Confidence 57889999999999999999999986532 667777776 55443 444443
No 232
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=47.85 E-value=39 Score=31.65 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=31.2
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
+.+...+.++.|+++|++++|+||=....+..++++. +.
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~ 58 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFATGRHVLEMQHILGAL-SL 58 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc-CC
Confidence 3444556777889999999999999888888888875 54
No 233
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=46.81 E-value=26 Score=32.51 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 182 DGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 182 pG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
|.+.++++.++++|++++++||=.-.-+..++++.
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~ 58 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQK 58 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcC
Confidence 45566777888899999999998888888887765
No 234
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=46.42 E-value=65 Score=32.49 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=43.9
Q ss_pred hhhhhccCCCceEECC-hhHHHHHHHHHHhcCCCcEEEEEecccccccccc-cCcc-ccchHHHhhccChhHHHHHHHHH
Q 018557 51 NKMENQDLSKFTIKGD-PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI-NGSR-GQSSHGLLQQGNPEYDAKRQALY 127 (354)
Q Consensus 51 ~~~~~~~~~~~v~i~d-~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~-~g~~-~ds~~~il~~~~~e~~~~~~~L~ 127 (354)
..|++.+.++.|.+.| |+.+.+||.+...+|.. |+..+.. .|.+ .+..+.++.-+..+-.++++++.
T Consensus 250 ~KMSkS~~~s~I~L~D~p~~I~kKI~kA~Td~~~----------t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~ 319 (368)
T PRK12285 250 GKMSSSKPESAIYLTDDPETVKKKIMKALTGGRA----------TLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIY 319 (368)
T ss_pred CcCCCCCCCCeeeccCCHHHHHHHHHhCcCCCCc----------ccccccccCCCCCcchHHHHHHHHhcCCCccHHHHH
Confidence 5899877677888877 77899999976555443 3333322 3333 24556666654422224567777
Q ss_pred HhhCC
Q 018557 128 EYYHP 132 (354)
Q Consensus 128 ~~y~p 132 (354)
+.|..
T Consensus 320 ~~y~~ 324 (368)
T PRK12285 320 EECRS 324 (368)
T ss_pred HHHhc
Confidence 77764
No 235
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=46.10 E-value=10 Score=39.12 Aligned_cols=13 Identities=46% Similarity=0.802 Sum_probs=11.8
Q ss_pred EEEEecccccccc
Q 018557 86 QVIADFDGTLTRY 98 (354)
Q Consensus 86 ~Vi~DFDgTIT~~ 98 (354)
.||+|.|||||+.
T Consensus 377 iVVsDiDGTITkS 389 (580)
T COG5083 377 IVVSDIDGTITKS 389 (580)
T ss_pred EEEEecCCcEEeh
Confidence 5999999999994
No 236
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=45.40 E-value=46 Score=30.82 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=30.0
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecCh---HHHHHHHHHHhcCC
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGL---ADIIEEVLRQKVHK 219 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~---~~~Ie~vL~~~~g~ 219 (354)
.+-||+.++++.++++|+++.++|.+. ...+...|.+++|.
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~ 57 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGV 57 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346799999999999999999999444 34455556664354
No 237
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.31 E-value=1.2e+02 Score=29.95 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=63.1
Q ss_pred chhhhhhhhcCCCC---CCCC-CCCC--CccccccccchhhhhhhccCCCceEE-CChhHHHHHHHHHHhcCCCcEEEEE
Q 018557 17 HLANAISQQLHHFL---PSKY-CCTS--SPRVWNRCCSAQNKMENQDLSKFTIK-GDPQSLQNKISQIRMAGPSKLQVIA 89 (354)
Q Consensus 17 ~~~~~~~~~~~~~~---~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i-~d~~~~~~k~~~~~~~g~~kl~Vi~ 89 (354)
-|+.-+.+|-++.- +..| .--+ .|++-. .|- ..|++.+.++.+.. -||+.+++||.++..+|+
T Consensus 160 eLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL--~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~~~td~~------- 229 (314)
T COG0180 160 ELTRDIARRFNHLYGEVFPLPEALISKVARLPGL--DGP-GKMSKSDPNSAIFLLDDPKTIRKKIKKAATDGP------- 229 (314)
T ss_pred HHHHHHHHHHHhhcCCccCCccccccCCCcccCC--CCC-CcccccCCCCeeeccCCHHHHHHHHHHhccCCC-------
Confidence 35666666666431 2222 2122 355543 344 78998866656655 567889999999865441
Q ss_pred ecccccccccccCccc-cchHHHhhccChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHH
Q 018557 90 DFDGTLTRYFINGSRG-QSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEE 150 (354)
Q Consensus 90 DFDgTIT~~~~~g~~~-ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~e 150 (354)
|+.++...|++. ..-+.+..-+.+ .+...+++++|.- +.+..-|.-+.+.|
T Consensus 230 ----~~~~~~~~g~Pe~~~l~~~~~~~~~--~~~~~ei~~~~~~----G~~~~ge~K~~lae 281 (314)
T COG0180 230 ----TLIEYRKGGKPEVCNLFEIYSAFFE--DDSILEIEAEYRG----GELGCGECKKELAE 281 (314)
T ss_pred ----CccccCCCCCCCcchHHHHHHHhcC--CCcHHHHHHHHhc----cccchHHHHHHHHH
Confidence 666665555653 334555555442 1222277777753 44555555444433
No 238
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=45.19 E-value=53 Score=30.91 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 184 VVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 184 ~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
..+.++.|+++|++++|+||=....+..++++. +.
T Consensus 29 ~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l-~~ 63 (271)
T PRK03669 29 AAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL-GL 63 (271)
T ss_pred HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh-CC
Confidence 445677789999999999999988899998876 54
No 239
>PRK10976 putative hydrolase; Provisional
Probab=45.19 E-value=44 Score=31.09 Aligned_cols=39 Identities=8% Similarity=0.053 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
+.+...+.++.|+++|++++|+||=....+..++++. +.
T Consensus 20 is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~ 58 (266)
T PRK10976 20 LSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNL-EI 58 (266)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc-CC
Confidence 3444556788899999999999998887888888765 54
No 240
>PLN02486 aminoacyl-tRNA ligase
Probab=43.86 E-value=1.5e+02 Score=30.22 Aligned_cols=84 Identities=19% Similarity=0.095 Sum_probs=49.5
Q ss_pred CCccccccccchhhhhhhccCCCceEECC-hhHHHHHHHH-HHhcCCCcEEEEEecccccccccccC-cc-ccchHHHhh
Q 018557 38 SSPRVWNRCCSAQNKMENQDLSKFTIKGD-PQSLQNKISQ-IRMAGPSKLQVIADFDGTLTRYFING-SR-GQSSHGLLQ 113 (354)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~d-~~~~~~k~~~-~~~~g~~kl~Vi~DFDgTIT~~~~~g-~~-~ds~~~il~ 113 (354)
+..+|...+ ....|++...++.|.+.| |+.+.+||.+ ...+|.. |+......| .+ .++.+.++.
T Consensus 253 ~~~lp~L~g--~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~----------t~~~~~~~gg~p~v~~~~~~l~ 320 (383)
T PLN02486 253 SRFFPALQG--ESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQD----------TVEEHRELGANLEVDIPWKYLN 320 (383)
T ss_pred cccccCCCC--CCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCC----------cccccccCCCCCccchHHHHHH
Confidence 445555432 225898777777788886 7789999998 4444432 344333323 32 245566666
Q ss_pred ccChhHHHHHHHHHHhhCCCC
Q 018557 114 QGNPEYDAKRQALYEYYHPLE 134 (354)
Q Consensus 114 ~~~~e~~~~~~~L~~~y~p~E 134 (354)
-+.++ .++++++.+.|..++
T Consensus 321 ~f~~d-d~~~eei~~~y~~G~ 340 (383)
T PLN02486 321 FFLED-DAELERIKKEYGSGR 340 (383)
T ss_pred HHcCC-chHHHHHHHHhccCC
Confidence 65422 245777888886433
No 241
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=43.61 E-value=70 Score=30.12 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=18.6
Q ss_pred CCceEEEEcCCC-CChhcccCCCcc
Q 018557 282 NRTNVLLLGDHI-GDLGMSDGLKYE 305 (354)
Q Consensus 282 ~r~~vI~iGDg~-~Dl~ma~gl~~d 305 (354)
+..++++|||+. +|+.++......
T Consensus 195 ~~~~~~~vGD~~~~Di~~a~~~G~~ 219 (257)
T TIGR01458 195 EPEEAVMIGDDCRDDVGGAQDCGMR 219 (257)
T ss_pred ChhhEEEECCCcHHHHHHHHHcCCe
Confidence 347899999996 999998744333
No 242
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.74 E-value=1.3e+02 Score=32.99 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHh----hCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHH
Q 018557 118 EYDAKRQALYEY----YHPLEFSPTVPLEEKT-KLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLE 192 (354)
Q Consensus 118 e~~~~~~~L~~~----y~p~E~d~~is~~Ek~-~~m~ew~~~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~ 192 (354)
|..-+++.+.+. |+|.|+..+ ++. --..+.|..+.+.+. +-+++.+.-... ..|-.|+.|+...+.
T Consensus 619 E~A~~LEa~a~~~~~~~~~~~~~~~----~~~vld~~~~~~~~l~~~~--~~~~~~iA~~fh---~~la~~~~e~~~~~a 689 (750)
T COG0068 619 EAAMALEALADQSDGVDYPYEIKNE----DNQVLDLKELILGVLEDLL--KDEPEKIATKFH---NALAEGFAELAVELA 689 (750)
T ss_pred chhhhHHHHhhhcccCcccceeccC----CccEeeHHHHHHHHHHHhc--cCCHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 334455555555 777665543 221 112234444444333 556666654443 478899999986555
Q ss_pred -hCCCCEEEEecChH--HHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcE
Q 018557 193 -ERDIPVLIFSAGLA--DIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHL 239 (354)
Q Consensus 193 -~~gipv~I~SaG~~--~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l 239 (354)
+.||.-+++|||.- ..+-.-+.+.+.. .+.+++.+.-...+||-+
T Consensus 690 ~~~gi~~V~lsGGVf~N~~l~~~~~~~l~~--~~f~~~~~~~~P~~DggI 737 (750)
T COG0068 690 KKYGINKVVLSGGVFQNRLLLERLAKYLKK--EGFRFLFHQEVPAGDGGI 737 (750)
T ss_pred HhcCccEEEeeCCeeecHHHHHHHHHHHHh--cCceEeeecccCCCCCce
Confidence 67899999999973 3333333333221 234777777766666644
No 243
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=42.56 E-value=97 Score=30.63 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=23.5
Q ss_pred hhhhhccCCCceEECC-hhHHHHHHHHHHhcCC
Q 018557 51 NKMENQDLSKFTIKGD-PQSLQNKISQIRMAGP 82 (354)
Q Consensus 51 ~~~~~~~~~~~v~i~d-~~~~~~k~~~~~~~g~ 82 (354)
..|++.+.++.|.+.| |+.+.+||.+...++.
T Consensus 191 ~KMSKS~~~s~I~L~D~~e~I~~KI~~a~td~~ 223 (328)
T TIGR00233 191 KKMSKSDPNSAIFLTDTPKQIKKKIRKAATDGG 223 (328)
T ss_pred CcCCCCCCCCeEeecCCHHHHHHHHHhcCCCCC
Confidence 5899777666777755 6778999988766543
No 244
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=42.26 E-value=86 Score=27.27 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=26.7
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChH-HHHHHHHH
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLA-DIIEEVLR 214 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~-~~Ie~vL~ 214 (354)
..+.+.++++.+++.|+++.|.|++.. +..+.+++
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~ 108 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQ 108 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Confidence 446788999999999999999998753 34445544
No 245
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=41.94 E-value=13 Score=33.12 Aligned_cols=12 Identities=50% Similarity=0.714 Sum_probs=11.3
Q ss_pred EEEEeccccccc
Q 018557 86 QVIADFDGTLTR 97 (354)
Q Consensus 86 ~Vi~DFDgTIT~ 97 (354)
.+|||+||++|.
T Consensus 9 ~~v~d~dGv~td 20 (169)
T TIGR02726 9 LVILDVDGVMTD 20 (169)
T ss_pred EEEEeCceeeEC
Confidence 689999999998
No 246
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=41.89 E-value=21 Score=39.55 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEecccccccc
Q 018557 69 SLQNKISQIRMAGPSKLQVIADFDGTLTRY 98 (354)
Q Consensus 69 ~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~ 98 (354)
.....+.++++ +++..+++||||||+.+
T Consensus 494 ~~~~~~~~y~~--a~~rll~LDyDGTL~~~ 521 (797)
T PLN03063 494 PEQDVIQQYSK--SNNRLLILGFYGTLTEP 521 (797)
T ss_pred CHHHHHHHHHh--ccCeEEEEecCccccCC
Confidence 34445555554 44688899999999975
No 247
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=41.72 E-value=13 Score=34.70 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=14.1
Q ss_pred CcEEEEEecccccccc
Q 018557 83 SKLQVIADFDGTLTRY 98 (354)
Q Consensus 83 ~kl~Vi~DFDgTIT~~ 98 (354)
++..+++||||||+.+
T Consensus 2 ~~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEI 17 (244)
T ss_pred CcEEEEEecCccccCC
Confidence 5788999999999985
No 248
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=41.69 E-value=2.4e+02 Score=26.27 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=38.3
Q ss_pred eEECChhHHHHHHHHHHhcCCCcEEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHh-hCCCCCCCCCC
Q 018557 62 TIKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEY-YHPLEFSPTVP 140 (354)
Q Consensus 62 v~i~d~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~-y~p~E~d~~is 140 (354)
....||..+.+++. +.|++. +.++|.|+..-. ..-..+++ ++-+. ..|+.+++-+.
T Consensus 29 ~~~~dp~~~a~~~~---~~g~~~-l~ivDLd~~~g~--------~~n~~~i~-----------~i~~~~~~pv~vgGGir 85 (241)
T PRK14024 29 TSYGSPLDAALAWQ---RDGAEW-IHLVDLDAAFGR--------GSNRELLA-----------EVVGKLDVKVELSGGIR 85 (241)
T ss_pred eECCCHHHHHHHHH---HCCCCE-EEEEeccccCCC--------CccHHHHH-----------HHHHHcCCCEEEcCCCC
Confidence 34569999888755 678755 566899975311 11112222 22222 25777777777
Q ss_pred HHHHHHHHHH
Q 018557 141 LEEKTKLMEE 150 (354)
Q Consensus 141 ~~Ek~~~m~e 150 (354)
..|.++.+.+
T Consensus 86 s~edv~~~l~ 95 (241)
T PRK14024 86 DDESLEAALA 95 (241)
T ss_pred CHHHHHHHHH
Confidence 7676665554
No 249
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=41.18 E-value=47 Score=34.41 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=34.4
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
+.-.|.+..+|+.|++.|.++.++|+|.-+++..+|+..+|.
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~ 223 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGP 223 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGC
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCC
Confidence 555789999999999999999999999999999999988775
No 250
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=41.17 E-value=24 Score=39.87 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeccccccccc
Q 018557 69 SLQNKISQIRMAGPSKLQVIADFDGTLTRYF 99 (354)
Q Consensus 69 ~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~ 99 (354)
.+...+.++.+ ..+..+++||||||+.+.
T Consensus 578 ~~~~~~~~y~~--a~~RLlfLDyDGTLap~~ 606 (934)
T PLN03064 578 PPEDAIQRYLQ--SNNRLLILGFNATLTEPV 606 (934)
T ss_pred CHHHHHHHHHh--ccceEEEEecCceeccCC
Confidence 34555555554 346889999999999973
No 251
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=41.06 E-value=14 Score=32.05 Aligned_cols=58 Identities=22% Similarity=0.133 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCCChHHHHHHHHHHh
Q 018557 283 RTNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDAPMWEVVELVSQLC 349 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~t~~~~~~ll~~i~ 349 (354)
..+++|+||+.+|+.|+. .+.. ++++.+.+ + . -...-|.++..-+.=.....++++|+
T Consensus 92 ~~~~~~vGDs~~D~~~~~--~ag~--~~~v~~~~-~-~---~~~~a~~i~~~~~~~g~~~~~~~~~~ 149 (154)
T TIGR01670 92 PENVAYIGDDLIDWPVME--KVGL--SVAVADAH-P-L---LIPRADYVTRIAGGRGAVREVCELLL 149 (154)
T ss_pred HHHEEEECCCHHHHHHHH--HCCC--eEecCCcC-H-H---HHHhCCEEecCCCCCcHHHHHHHHHH
Confidence 357999999999999988 3333 34444322 1 1 12334666642222222445555554
No 252
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=40.87 E-value=1.7e+02 Score=28.98 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHhcCCCcEEEEEecccccccccccCccccchHHHhhccC-----hhHHHHHHHHHHhhCCCCCCCCCCH
Q 018557 67 PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN-----PEYDAKRQALYEYYHPLEFSPTVPL 141 (354)
Q Consensus 67 ~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~-----~e~~~~~~~L~~~y~p~E~d~~is~ 141 (354)
|..+...|..|++.|.=..+|.+ -| -..|++++..+ ..+...=.+|+++..----|- +=.
T Consensus 70 saGlr~ii~~Li~~~~VD~iVtT--ga------------niehD~~~~lg~~~y~G~~~~dd~~Lr~~ginRIgd~-~ip 134 (316)
T PRK02301 70 PAGMRGIVSDLIRDGHIDVLVTT--GA------------NLTHDVIEAIGGHHHHGTAHAHDEELRDEGIDRIYDV-YLP 134 (316)
T ss_pred HHHHHHHHHHHHHcCCeeEEEcC--CC------------chHHHHHHHcCCCeeccCCCCCHHHHHHcCCCcccee-CCC
Confidence 56677888888887764444422 11 22345555432 111112234444422211122 333
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEE
Q 018557 142 EEKTKLMEEWWGKTHGLLIE-GGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLI 200 (354)
Q Consensus 142 ~Ek~~~m~ew~~~~~~ll~~-~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I 200 (354)
+|.++..++|.....+-+.+ ...+..++...+-+ .+.+ =..++.++.++|||+++
T Consensus 135 ~e~y~~~E~~i~~il~~~~~~~~~s~~e~i~~lGk---~i~~-e~Sil~~Ay~~~VPIf~ 190 (316)
T PRK02301 135 QEHFADFEEFLQDVFPGLEEEGTVSIRDLLTEIGR---DLDD-DSGILAAAYECDVPVYC 190 (316)
T ss_pred hHHHHHHHHHHHHHHHhhhhcCCcCHHHHHHHHHh---hccC-CCcHHHHHHHcCCCEEC
Confidence 67788888999888777655 55777777655543 2332 26789999999999875
No 253
>PTZ00174 phosphomannomutase; Provisional
Probab=40.62 E-value=25 Score=32.78 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=16.5
Q ss_pred CceEEEEcC----CCCChhccc
Q 018557 283 RTNVLLLGD----HIGDLGMSD 300 (354)
Q Consensus 283 r~~vI~iGD----g~~Dl~ma~ 300 (354)
..+|+.+|| |.||+.|.+
T Consensus 200 ~~eviafGD~~~~~~NDieMl~ 221 (247)
T PTZ00174 200 FKEIHFFGDKTFEGGNDYEIYN 221 (247)
T ss_pred hhhEEEEcccCCCCCCcHhhhh
Confidence 479999999 999999987
No 254
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=39.77 E-value=16 Score=30.25 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=17.0
Q ss_pred CceEEEEcC-CCCChhcccCC
Q 018557 283 RTNVLLLGD-HIGDLGMSDGL 302 (354)
Q Consensus 283 r~~vI~iGD-g~~Dl~ma~gl 302 (354)
..+++|||| ..+|+.+|+.+
T Consensus 103 ~~~~v~IGD~~~~Di~~A~~~ 123 (132)
T TIGR01662 103 PEESVYVGDQDLTDLQAAKRA 123 (132)
T ss_pred hhheEEEcCCCcccHHHHHHC
Confidence 468999999 79999999743
No 255
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=38.65 E-value=2.1e+02 Score=29.31 Aligned_cols=132 Identities=11% Similarity=-0.036 Sum_probs=66.1
Q ss_pred CCccccccccchhhhhhhccCCCceEECC-hhHHHHHHHHHHhcCCCcEEEEEecccccccccc-cCccc-cchHHHhhc
Q 018557 38 SSPRVWNRCCSAQNKMENQDLSKFTIKGD-PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI-NGSRG-QSSHGLLQQ 114 (354)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~d-~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~-~g~~~-ds~~~il~~ 114 (354)
..+++-..+ ..|++... ..|.+-| |+.+.+||.++.. | |+....+ .|.+. ..-..++.-
T Consensus 254 ~~~I~gLdg----~KMSKS~~-n~I~L~Ds~~~I~kKI~~a~T----------D---s~~~~~~~~g~Pe~~nl~~i~~~ 315 (398)
T PRK12283 254 ASKMPGLDG----QKMSKSYG-NTIGLREDPESVTKKIRTMPT----------D---PARVRRTDPGDPEKCPVWQLHQV 315 (398)
T ss_pred CCcccCCCC----CcCCCCCC-CeeeCcCCHHHHHHHHHhCCC----------C---CcccccCCCCCCCcCHHHHHHHH
Confidence 455555432 58987654 4677766 8999999987754 3 2221223 34432 233444444
Q ss_pred cChhHHHHHHHHHHhhCCCCCCCCCC---HHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHH
Q 018557 115 GNPEYDAKRQALYEYYHPLEFSPTVP---LEE-KTKLMEEWWGKTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEF 190 (354)
Q Consensus 115 ~~~e~~~~~~~L~~~y~p~E~d~~is---~~E-k~~~m~ew~~~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~ 190 (354)
+..+ +...++.+.|.. +.+. ..+ -+..+.+|.....+-..+.--..+.+.++++.+.-.-|.=+.+.++.
T Consensus 316 ~~~~--~~~~~i~~~~~~----g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t~~~ 389 (398)
T PRK12283 316 YSDE--ETKEWVQKGCRS----AGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRD 389 (398)
T ss_pred hCCC--hHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4311 234455555543 3332 111 12444456655544433333345566666655444445555555554
Q ss_pred HHh
Q 018557 191 LEE 193 (354)
Q Consensus 191 L~~ 193 (354)
.++
T Consensus 390 v~~ 392 (398)
T PRK12283 390 VRE 392 (398)
T ss_pred HHH
Confidence 443
No 256
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=38.56 E-value=41 Score=25.54 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHhcCCCcEEEEEecccccc
Q 018557 66 DPQSLQNKISQIRMAGPSKLQVIADFDGTLT 96 (354)
Q Consensus 66 d~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT 96 (354)
+-+.|.++|....+.|.. |+.||+|+-+
T Consensus 2 ~G~~~~~~i~~~l~~~~~---V~lDF~gv~~ 29 (74)
T PF14213_consen 2 DGERLRDEIEPALKEGEK---VVLDFEGVES 29 (74)
T ss_pred ChHHHHHHHHHHHhcCCe---EEEECCCccc
Confidence 346788888888888877 8999999833
No 257
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.44 E-value=59 Score=33.33 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee
Q 018557 186 KLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR 230 (354)
Q Consensus 186 efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~ 230 (354)
+|=+.|++.|++++|+.+....++..++++. +. ..||+|.
T Consensus 82 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~i----~~V~~~~ 121 (454)
T TIGR00591 82 EVANECERLIIPFHLLDGPPKELLPYFVDLH-AA----AAVVTDF 121 (454)
T ss_pred HHHHHHHHcCCceEEeecChHHHHHHHHHHc-CC----CEEEEec
Confidence 3445566677777777777777777666654 32 1566665
No 258
>PHA02570 dexA exonuclease; Provisional
Probab=37.14 E-value=43 Score=31.43 Aligned_cols=59 Identities=25% Similarity=0.518 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHH--hcCCcccccHHHHHHHHHhCCC---CEEEEecChH---HHHHHHHHHh
Q 018557 148 MEEWWGKTHGLLIEGGLTYDAIKKSVS--NALIAFRDGVVKLFEFLEERDI---PVLIFSAGLA---DIIEEVLRQK 216 (354)
Q Consensus 148 m~ew~~~~~~ll~~~glt~~~i~e~v~--~~~i~LrpG~~efl~~L~~~gi---pv~I~SaG~~---~~Ie~vL~~~ 216 (354)
-.+||.+.- .+. ++.+. ...+.+..+..+|.++++++++ .+.+-.-|.. .+++.+.++.
T Consensus 64 TI~WW~kQS---------~EA-R~~L~~s~~~~~l~~al~~F~~fi~~~~~~~~~~~vWgnG~sFD~~IL~~a~r~~ 130 (220)
T PHA02570 64 TIEWWKNQS---------PEA-RKNLKPSDEDVSTYEGHKKFFEYLEANGVDPWKSQGWCRGNSFDFPILVDVIRDI 130 (220)
T ss_pred HHHHHHhCC---------HHH-HHhccCCCccccHHHHHHHHHHHHHHcCCCccceeEecCCCccCHHHHHHHHHHH
Confidence 358997442 333 34443 2358999999999999999984 3566666643 2555555555
No 259
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=37.07 E-value=52 Score=35.59 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=43.5
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeE-EcCCCc
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMV-FDKDGH 238 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~-fd~dG~ 238 (354)
-+.|||++.|||+++.+. +++.|.|=|-+.+...+++=. . |.=++|+++.. .|+++.
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~li-D---P~~~lF~dRIisrde~~~ 256 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLI-D---PEGKYFGDRIISRDESPF 256 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHh-C---CCCccccceEEEecCCCc
Confidence 478999999999999965 999999999999999997733 2 44456666653 344443
No 260
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=37.06 E-value=88 Score=26.49 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=27.4
Q ss_pred ccccHHHHHHHHHhCCCCEEEEec------ChHHHHHHHHHHh
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSA------GLADIIEEVLRQK 216 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~Sa------G~~~~Ie~vL~~~ 216 (354)
=|||+.++++.++...+.++|++. ...+++...|+..
T Consensus 47 ~Rp~l~~ll~~i~~g~~d~lvV~~ldRl~R~~~d~~~~~l~~~ 89 (134)
T cd03769 47 KRKGLLKLLEDVLAGKVERVVITYKDRLARFGFELLEELFKAY 89 (134)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEeccHHHHhhHHHHHHHHHHC
Confidence 599999999999998888888754 2334555555544
No 261
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=37.05 E-value=2.1e+02 Score=28.57 Aligned_cols=116 Identities=8% Similarity=0.077 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHhcCCCcEEEEEecccccccccccCccccchHHHhhccC-----hhHHHHHHHHHHhhCCCCCCCCCCH
Q 018557 67 PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN-----PEYDAKRQALYEYYHPLEFSPTVPL 141 (354)
Q Consensus 67 ~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~-----~e~~~~~~~L~~~y~p~E~d~~is~ 141 (354)
|..+...|+.|++.|.=..+|.+ -|+ ..|++++..+ ..+...=.+|+++..----| .+=.
T Consensus 59 saGlr~~i~~Li~~g~VD~iVTT--gan------------i~hD~~~~lg~~~y~g~f~~dd~~Lr~~ginRIgd-v~ip 123 (329)
T PRK00805 59 PAGMRKIIKWLIRNRYVDVLVST--GAN------------IFHDIHEALGFKHYKGSHHVDDEELFKEGIDRIYD-VFAY 123 (329)
T ss_pred HHHHHHHHHHHHHcCCeeEEEeC--CCc------------hHHHHHHHcCCCeeccCCCCCHHHHHHcCCCcccc-cccC
Confidence 56778888888888875554433 222 2345555432 11111122344432211112 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhcCCcccc-cHHHHHHHHHhCCCCEEE
Q 018557 142 EEKTKLMEEWWGKTHGLLIEG-GLTYDAIKKSVSNALIAFRD-GVVKLFEFLEERDIPVLI 200 (354)
Q Consensus 142 ~Ek~~~m~ew~~~~~~ll~~~-glt~~~i~e~v~~~~i~Lrp-G~~efl~~L~~~gipv~I 200 (354)
+|.+..+++|.....+-+.+. ..+..++...+-+ .+.+ .=..++.++.++|||+++
T Consensus 124 ~e~y~~~E~~i~~il~~~~~~~~~s~~e~i~~lGk---~i~~~~~~Sil~~Ayk~~VPVf~ 181 (329)
T PRK00805 124 EEEFRKADNLIAEFAETLPGFKSYSSREFLYLLGK---WLNEKDIDSIVAAAYRANVPIFV 181 (329)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHH---hhcccCcchHHHHHHHcCCCEEc
Confidence 677788889998887766544 6777777655543 2322 125799999999999876
No 262
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=37.02 E-value=2.6e+02 Score=27.55 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHhcCCCcEEEEEecccccccccccCccccchHHHhhccC----hhHHHHHHHHHHhhCCCCCCCCCCHH
Q 018557 67 PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN----PEYDAKRQALYEYYHPLEFSPTVPLE 142 (354)
Q Consensus 67 ~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~----~e~~~~~~~L~~~y~p~E~d~~is~~ 142 (354)
|..+++.|..|++.|.=..+|.+ -|+ ..|++++..+ .++...=.+|+++..----|- +=.+
T Consensus 58 saGlr~ii~~Li~~g~Vd~ivtT--gan------------l~hD~~~~~g~~~~g~f~~dd~~Lr~~ginRI~dv-~ip~ 122 (301)
T TIGR00321 58 PSGMREIIAYLIQHGMIDALVTT--GAN------------LEHDLIEALGPTHLGDFAVDDKKLREEGINRIGDV-FVPN 122 (301)
T ss_pred hhhHHHHHHHHHHcCCeeEEEeC--CCc------------hHHHHHHHcCcccccCCCCChHHHHHcCCCcccee-cCCH
Confidence 56788888888888875554433 222 2345555432 111112234444422111122 3336
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEE
Q 018557 143 EKTKLMEEWWGKTHGLLIE--GGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLI 200 (354)
Q Consensus 143 Ek~~~m~ew~~~~~~ll~~--~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I 200 (354)
|.++..++|.....+-+.+ ...+..++...+-+ .+.+-=..++.++.++|+|+++
T Consensus 123 e~y~~~E~~i~~i~~~~~~~~~~~s~~e~i~~lGk---~i~~~e~Sil~~Ayk~~VPIf~ 179 (301)
T TIGR00321 123 ENFEVFEEWLVEIFSEMLGEQPIITPSEFIDEIGK---RINDKRSSIRYAAYKRKIPIFC 179 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHh---hcCCccchHHHHHHHcCCCEEC
Confidence 7788888899888777643 24777776555443 3433126799999999999875
No 263
>PLN02423 phosphomannomutase
Probab=36.83 E-value=21 Score=33.43 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=24.2
Q ss_pred cCCCcEEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHh
Q 018557 80 AGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEY 129 (354)
Q Consensus 80 ~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~ 129 (354)
+...++.+++|+||||.... + +..++.++.+++|.++
T Consensus 3 ~~~~~~i~~~D~DGTLl~~~---------~----~i~~~~~~ai~~l~~~ 39 (245)
T PLN02423 3 ARKPGVIALFDVDGTLTAPR---------K----EATPEMLEFMKELRKV 39 (245)
T ss_pred CCccceEEEEeccCCCcCCC---------C----cCCHHHHHHHHHHHhC
Confidence 44567788899999999721 0 1234555666666665
No 264
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=36.04 E-value=1.2e+02 Score=29.17 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=27.0
Q ss_pred hhhhhhhccCCCceEECC-hhHHHHHHHHHHhcCCC
Q 018557 49 AQNKMENQDLSKFTIKGD-PQSLQNKISQIRMAGPS 83 (354)
Q Consensus 49 ~~~~~~~~~~~~~v~i~d-~~~~~~k~~~~~~~g~~ 83 (354)
....|++.+.+..|.+.| |+.+++||.+...++-.
T Consensus 188 ~~~KMSKS~~~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 188 PSKKMSKSDPNNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred CCCcccCCCCCCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 346899776667788875 89999999988776554
No 265
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=35.74 E-value=2.5e+02 Score=27.85 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHhcCCCcEEEEEecccccccccccCccccchHHHhhccCh-----hHHHHHHHHHHhhCCCCCCCCCCH
Q 018557 67 PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNP-----EYDAKRQALYEYYHPLEFSPTVPL 141 (354)
Q Consensus 67 ~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~-----e~~~~~~~L~~~y~p~E~d~~is~ 141 (354)
|..++..|+.|++.|.=..+|-+ -| -..|++++..++ .+...=.+|+++..----|--++
T Consensus 67 s~Glr~ii~~Li~~~~VD~iVtT--ga------------ni~hD~~~~lg~~~y~G~~~~dd~~Lr~~GinRIgdv~ip- 131 (312)
T PRK01221 67 STGLRGLIADLIKRGLFNVVITT--CG------------TLDHDIARSFGGVYYKGSFDIDDAMLKDLGIHRLGNVLIP- 131 (312)
T ss_pred HHHHHHHHHHHHHcCCeeEEEeC--CC------------chHHHHHHHcCCCeEecCCCCChHHHHHcCCCcceeeccC-
Confidence 55678888888888765444432 12 223455555431 11111223444422111122233
Q ss_pred HHHH-HHHHHHHHHHHHHHHh--cCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEE
Q 018557 142 EEKT-KLMEEWWGKTHGLLIE--GGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLI 200 (354)
Q Consensus 142 ~Ek~-~~m~ew~~~~~~ll~~--~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I 200 (354)
+|.+ +..++|.....+-+.+ ...+..++...+-+ .+.+. ..++.++.++|||+++
T Consensus 132 ~e~y~~~~E~~i~~il~~~~~~~~~~s~~e~i~~lGk---~i~~e-~Sil~~Ay~~~VPVf~ 189 (312)
T PRK01221 132 VESYGPLIEKFVRKFLEELYKDKKEWSTYELLWEFGK---RINDE-NSILRAAYEKGVPVFV 189 (312)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHh---hcCCc-CcHHHHHHHcCCCEEC
Confidence 3444 6677888877776654 34666666554433 44432 6799999999999875
No 266
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=35.39 E-value=1.1e+02 Score=30.02 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=29.4
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecCh---HHHHHHH
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGL---ADIIEEV 212 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~---~~~Ie~v 212 (354)
..-++|.+.+++++++++|+.+.|.|.|. .+.++.+
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L 101 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDAL 101 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHH
Confidence 45678999999999999999999999996 3455544
No 267
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=35.34 E-value=69 Score=33.17 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 185 VKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 185 ~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.+|=+.|++.|+++.|+.+-..+++..++++.
T Consensus 58 ~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~ 89 (471)
T TIGR03556 58 QELQQRYQQAGSQLLILQGDPVQLIPQLAQQL 89 (471)
T ss_pred HHHHHHHHHCCCCeEEEECCHHHHHHHHHHHc
Confidence 34445566666666666666666666665544
No 268
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=32.77 E-value=78 Score=31.22 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCCEEEEecChHHHHHH---HHHHhcCCCCCcceEEeeeeEEcCCCcE-EecCCCccccCCCCcccccc
Q 018557 185 VKLFEFLEERDIPVLIFSAGLADIIEE---VLRQKVHKSFKNVKIVSNRMVFDKDGHL-VSFKGKTIHSLNKNEHALDM 259 (354)
Q Consensus 185 ~efl~~L~~~gipv~I~SaG~~~~Ie~---vL~~~~g~~~~ni~IvSN~~~fd~dG~l-~gf~~~~ih~~nK~~~~l~~ 259 (354)
.++++.++++++|++.-.-+...++.. .|.+.+ .|...+.+.-+...+-|.+ +|.+| ..|.+.+++.
T Consensus 96 ~~l~~~a~~~~ipll~t~~~t~~~i~~l~~~L~~~l---a~~~~iHg~~v~V~G~GvLi~G~SG-----~GKSelALeL 166 (308)
T PRK05428 96 PELLEAAKEAGIPLLRTPLSTTRLISKLTNYLDRKL---APRTSVHGVLVDIYGIGVLITGESG-----IGKSETALEL 166 (308)
T ss_pred HHHHHHHHHcCCcEEEeCCcHHHHHHHHHHHHHHHh---hhcceeeeEEEEECCEEEEEEcCCC-----CCHHHHHHHH
Confidence 468899999999999888777666643 333332 3566888988998877776 66654 4566666643
No 269
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=32.73 E-value=2.1e+02 Score=28.42 Aligned_cols=68 Identities=10% Similarity=0.138 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEEecCh--HHHHHHHHHHhcCCC---CCcceEEe
Q 018557 154 KTHGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIFSAGL--ADIIEEVLRQKVHKS---FKNVKIVS 228 (354)
Q Consensus 154 ~~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~SaG~--~~~Ie~vL~~~~g~~---~~ni~IvS 228 (354)
++...+....++.+++.+++++ -+.++++...+.|+. +++.+.+ .++++.++++..|.. .+-++.+.
T Consensus 21 ~a~~~~~~G~i~~ee~~~~~~~-------~i~~~i~~q~~~Gld-v~v~Ge~~r~Dmv~~F~e~l~G~~~~~~~~v~~~~ 92 (330)
T COG0620 21 KAREKWKKGEISEEEYEEILRE-------AIRRAIKDQEEAGLD-VLVDGEFERNDMVEYFAEKLDGVKFTQNGWVRSYG 92 (330)
T ss_pred HHHHHHHhCCCCHHHHHHHHHH-------HHHHHHHHHHhcCCc-EecCCceeecHHHHHHHHHcCCeeeccCCcEEEec
Confidence 3333334567888888877653 467899999999999 3555555 499999999887753 23355566
Q ss_pred e
Q 018557 229 N 229 (354)
Q Consensus 229 N 229 (354)
|
T Consensus 93 ~ 93 (330)
T COG0620 93 S 93 (330)
T ss_pred c
Confidence 6
No 270
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=32.53 E-value=29 Score=30.51 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=17.3
Q ss_pred CceEEEEcCCCCChhcccCC
Q 018557 283 RTNVLLLGDHIGDLGMSDGL 302 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl 302 (354)
..++++|||+.+|+.+|...
T Consensus 120 ~~~~~~VgDs~~Di~~A~~a 139 (181)
T PRK08942 120 LAGSPMVGDSLRDLQAAAAA 139 (181)
T ss_pred hhhEEEEeCCHHHHHHHHHC
Confidence 46899999999999999843
No 271
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=32.35 E-value=43 Score=33.82 Aligned_cols=53 Identities=13% Similarity=0.242 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCC----CCcceEEeeeeEEc
Q 018557 182 DGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKS----FKNVKIVSNRMVFD 234 (354)
Q Consensus 182 pG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~----~~ni~IvSN~~~fd 234 (354)
|....|++.|+++|-++.+++.+...++..-++-..|.+ |+-+-|-||+-.|-
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Ff 299 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFF 299 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCccc
Confidence 456678899999999999999999999988887665632 33344567776663
No 272
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=31.64 E-value=1.5e+02 Score=29.66 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=56.8
Q ss_pred EECChhHHHHHHHHHHhcCCCcEEEEEecccccccccc------cC-c---cccchHHHhhccC--hhHHHHHHHHHHhh
Q 018557 63 IKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI------NG-S---RGQSSHGLLQQGN--PEYDAKRQALYEYY 130 (354)
Q Consensus 63 ~i~d~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~------~g-~---~~ds~~~il~~~~--~e~~~~~~~L~~~y 130 (354)
-+.||..++..=++|..+ .|-+-.++.+.. || - -+.+|...+.+.. +-....+.++-..|
T Consensus 76 ~~~d~~~Fr~LH~am~dA--------l~p~a~~~dYY~~~~~~dDGGYL~~LV~tCq~~l~~lP~y~~V~~~l~~la~lY 147 (330)
T PF10776_consen 76 TSLDPKDFRQLHQAMLDA--------LDPGAPLSDYYRYRPEQDDGGYLRALVRTCQQVLAQLPSYELVRPYLLELARLY 147 (330)
T ss_pred CCCChHHHHHHHHHHHHH--------cCCCCCcchHHHcCCccccChHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 357999988888888765 222233333311 11 1 1356666666654 44555666667767
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 018557 131 HPLEFSPTVPLEEKTKLMEEWWGKTHG 157 (354)
Q Consensus 131 ~p~E~d~~is~~Ek~~~m~ew~~~~~~ 157 (354)
...-+-.++..+++.+.|.+||.+-..
T Consensus 148 ~dLQv~KH~~~~~Re~~L~~W~~~~~~ 174 (330)
T PF10776_consen 148 SDLQVYKHLDPEEREPRLKSWFERHRD 174 (330)
T ss_pred HHhhHhcCCChhhhHHHHHHHHHHhhh
Confidence 777777899999999999999886643
No 273
>PTZ00174 phosphomannomutase; Provisional
Probab=31.31 E-value=70 Score=29.75 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=26.7
Q ss_pred ccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHH
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLR 214 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~ 214 (354)
+.|...+.++.++++|+.++|+||-...-+...++
T Consensus 23 is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 23 ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 44455667888999999999999987666655554
No 274
>PLN02886 aminoacyl-tRNA ligase
Probab=30.84 E-value=1.5e+02 Score=30.16 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=24.6
Q ss_pred hhhhhhccC--CCceEECC-hhHHHHHHHHHHhcCCC
Q 018557 50 QNKMENQDL--SKFTIKGD-PQSLQNKISQIRMAGPS 83 (354)
Q Consensus 50 ~~~~~~~~~--~~~v~i~d-~~~~~~k~~~~~~~g~~ 83 (354)
...|++.+. ++.|.+.| |+.+++||.++.+++..
T Consensus 249 ~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~~a~TD~~~ 285 (389)
T PLN02886 249 TSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDSFP 285 (389)
T ss_pred CCcCCCCCCCCCCeEEecCCHHHHHHHHhcCCCCCCC
Confidence 357986654 57888888 66789999987665543
No 275
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=30.43 E-value=4.3e+02 Score=26.23 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHhcCCCcEEEEEecccccccccccCccccchHHHhhccC-h----hHHHHHHHHHHhhCCCCCCCCCCH
Q 018557 67 PQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN-P----EYDAKRQALYEYYHPLEFSPTVPL 141 (354)
Q Consensus 67 ~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~-~----e~~~~~~~L~~~y~p~E~d~~is~ 141 (354)
|..+++.|+.|++.|.=..+| |+- ....|.+++..+ + ++.-.=.+|.++..-- +....-.
T Consensus 67 ssGlR~iia~LIr~~~idvvV--------TTg------g~l~hDi~~~lg~~~~~G~~~~dD~~Lr~~gi~R-Ignv~vp 131 (318)
T COG1899 67 SSGLREIIADLIRNGLIDVVV--------TTG------GNLDHDIIKALGGPHYCGSFEVDDVELREEGINR-IGNVFVP 131 (318)
T ss_pred chhHHHHHHHHHHcCCeEEEE--------ecC------CchhHHHHHHcCCCeeccCcCCCHHHHHHhcccc-ccceecC
Confidence 667899999999988755444 331 235677877754 1 1111222444443321 1233444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEE
Q 018557 142 EEKTKLMEEWWGKTHGLLIEGG--LTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLI 200 (354)
Q Consensus 142 ~Ek~~~m~ew~~~~~~ll~~~g--lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I 200 (354)
.|.+...++|.....+-+.+.. ++..++..-+- -.|..-=..+|.+..++|||+++
T Consensus 132 ~e~y~~~E~~i~~i~~~l~~~~~~~s~~efi~elG---k~l~~~e~SiL~~A~~~~VPIf~ 189 (318)
T COG1899 132 NEEYEVFEEFIREILEKLLGIKKEWSTREFIYELG---KRLNDDESSILYTAAKNGVPIFC 189 (318)
T ss_pred hHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH---hhhCcccchHHHHHHHcCCCEEc
Confidence 5666888889988887776665 66544443332 23332334689999999999875
No 276
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=29.89 E-value=1e+02 Score=27.27 Aligned_cols=44 Identities=16% Similarity=0.410 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEee
Q 018557 184 VVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSN 229 (354)
Q Consensus 184 ~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN 229 (354)
+.++++.+.+++.+++++ ||-...++.+.++. ...+|++.|+..
T Consensus 35 ~~~ll~~~~~~~~~v~ll-G~~~~~~~~~~~~l-~~~yp~l~i~g~ 78 (171)
T cd06533 35 MPALLELAAQKGLRVFLL-GAKPEVLEKAAERL-RARYPGLKIVGY 78 (171)
T ss_pred HHHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHH-HHHCCCcEEEEe
Confidence 567888899999999999 55555666654433 223788888874
No 277
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=29.25 E-value=93 Score=19.99 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHh
Q 018557 150 EWWGKTHGLLIEGGLTYDAIKKSVSN 175 (354)
Q Consensus 150 ew~~~~~~ll~~~glt~~~i~e~v~~ 175 (354)
||..-.. -..+.|+|++++.+++..
T Consensus 4 EW~~Li~-eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 4 EWVELIK-EAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHH-HHHHTT--HHHHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCHHHHHHHHHh
Confidence 5655333 345689999999998863
No 278
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=28.97 E-value=29 Score=30.44 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=17.2
Q ss_pred CceEEEEcCCCCChhcccCC
Q 018557 283 RTNVLLLGDHIGDLGMSDGL 302 (354)
Q Consensus 283 r~~vI~iGDg~~Dl~ma~gl 302 (354)
..++++|||+.+|+.+|...
T Consensus 123 ~~~~v~VGDs~~Di~aA~~a 142 (176)
T TIGR00213 123 MAQSYMVGDKLEDMQAGVAA 142 (176)
T ss_pred hhhEEEEcCCHHHHHHHHHC
Confidence 46899999999999999843
No 279
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.97 E-value=1.5e+02 Score=27.43 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=26.5
Q ss_pred ccccH-HHHHHHHHhCCCCEEEEecChH--HHHHHHHH
Q 018557 180 FRDGV-VKLFEFLEERDIPVLIFSAGLA--DIIEEVLR 214 (354)
Q Consensus 180 LrpG~-~efl~~L~~~gipv~I~SaG~~--~~Ie~vL~ 214 (354)
+-+.| .++++.+++.|+.++|-|+|.. ..++.++.
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~ 88 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAK 88 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH
Confidence 44554 7999999999999999999975 34444443
No 280
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=28.61 E-value=2.8e+02 Score=27.74 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHhcCCccccc-----HHHHHHHHHhCCCCEEE
Q 018557 142 EEKTKLMEEWWGKTHGLLIE------GGLTYDAIKKSVSNALIAFRDG-----VVKLFEFLEERDIPVLI 200 (354)
Q Consensus 142 ~Ek~~~m~ew~~~~~~ll~~------~glt~~~i~e~v~~~~i~LrpG-----~~efl~~L~~~gipv~I 200 (354)
+|.+...++|.....+-+.+ ...+..++...+-+ .+.+. =..++.++.++|||+++
T Consensus 143 ~e~y~~~E~~i~~il~~~~~~q~~~~~~~s~~e~i~~lGk---~i~~~~~~~~e~Sil~~Ayk~~VPIf~ 209 (334)
T PRK03971 143 NDRYIEFEEYMYEFFEELLAKQREEGKIITASEFCYELGR---FMDEKLGKEKEKSILYWAYKNNIPIFC 209 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHH---HHhhhccCCccchHHHHHHHcCCCEEc
Confidence 56678888888877776632 34666666544432 23221 26799999999999876
No 281
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=28.56 E-value=2.9e+02 Score=24.86 Aligned_cols=45 Identities=20% Similarity=0.410 Sum_probs=32.3
Q ss_pred cHHHHHHHHHh---------CCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEee
Q 018557 183 GVVKLFEFLEE---------RDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSN 229 (354)
Q Consensus 183 G~~efl~~L~~---------~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN 229 (354)
++.++-.+|++ -++.++||.|...+++..+|...-+ |.|++-+|=
T Consensus 87 ~lh~it~~l~Dp~w~G~dg~g~yDlviflG~~~yy~sq~Ls~lKh--Fs~i~tiaI 140 (170)
T COG1880 87 NLHAITQYLTDPNWPGFDGNGNYDLVIFLGSIYYYLSQVLSGLKH--FSNIKTIAI 140 (170)
T ss_pred HHHHHHHHhcCCCCCCcCCCCCcceEEEEeccHHHHHHHHHHhhh--hhcceEEEe
Confidence 34555566666 5689999999999999999987633 445554443
No 282
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=28.41 E-value=40 Score=36.80 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=29.1
Q ss_pred ccccHHHHHHHHHh-CCCCEEEEecChHHHHHHHHH
Q 018557 180 FRDGVVKLFEFLEE-RDIPVLIFSAGLADIIEEVLR 214 (354)
Q Consensus 180 LrpG~~efl~~L~~-~gipv~I~SaG~~~~Ie~vL~ 214 (354)
+.+.+.+.|+.|.+ .|+.++|+||--...++..+.
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~ 550 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFG 550 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhC
Confidence 46788899999999 499999999998877777654
No 283
>COG4996 Predicted phosphatase [General function prediction only]
Probab=28.17 E-value=89 Score=27.40 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=37.3
Q ss_pred CCcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCC
Q 018557 177 LIAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHK 219 (354)
Q Consensus 177 ~i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~ 219 (354)
.+.|+|.+++++++++..|.-+..+|=.+.+..-.+|+.. +.
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral-~~ 80 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRAL-DL 80 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHh-ch
Confidence 4789999999999999999999999999888888888865 53
No 284
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=27.67 E-value=1.4e+02 Score=20.65 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHh
Q 018557 150 EWWGKTHGLLIEGGLTYDAIKKSVSN 175 (354)
Q Consensus 150 ew~~~~~~ll~~~glt~~~i~e~v~~ 175 (354)
+|++.+...|...|+++.++.+++.+
T Consensus 1 d~~~d~~~AL~~LGy~~~e~~~av~~ 26 (47)
T PF07499_consen 1 DALEDALEALISLGYSKAEAQKAVSK 26 (47)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 47788888899999999999998875
No 285
>PHA02540 61 DNA primase; Provisional
Probab=27.57 E-value=6.3e+02 Score=25.25 Aligned_cols=19 Identities=47% Similarity=1.027 Sum_probs=14.3
Q ss_pred eeeE---EcCCCcEEecCCCcc
Q 018557 229 NRMV---FDKDGHLVSFKGKTI 247 (354)
Q Consensus 229 N~~~---fd~dG~l~gf~~~~i 247 (354)
|++- +|.+|+++||.|..+
T Consensus 172 ~RImFPI~d~~G~vigFgGR~l 193 (337)
T PHA02540 172 PRLVIPIFNKDGKIESFQGRAL 193 (337)
T ss_pred CeeEEEEECCCCCEEEEEeEEC
Confidence 5544 377899999998765
No 286
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.57 E-value=1.3e+02 Score=29.28 Aligned_cols=144 Identities=17% Similarity=0.247 Sum_probs=75.1
Q ss_pred cccccchhhhhhhc--cCCCceEECChhHHHHHH--HHHHhcCCC--cEEEEEecccccccccccCccccchHHHhhccC
Q 018557 43 WNRCCSAQNKMENQ--DLSKFTIKGDPQSLQNKI--SQIRMAGPS--KLQVIADFDGTLTRYFINGSRGQSSHGLLQQGN 116 (354)
Q Consensus 43 ~~~~~~~~~~~~~~--~~~~~v~i~d~~~~~~k~--~~~~~~g~~--kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~ 116 (354)
.+++||.....+.- +..+.+.. |+ +-.+| +++++.|.+ |++|..|-|+- .. ...-..++++++
T Consensus 85 ~~~~~~lL~a~dktgyd~t~~~rl--p~-l~~~isa~riK~~G~~avK~Lvy~~~D~~--e~------neqk~a~ierig 153 (306)
T COG3684 85 IAKSCALLLAYDKTGYDNTIPVRL--PD-LLRKISAKRIKEDGGDAVKFLVYYRSDED--EI------NEQKLAYIERIG 153 (306)
T ss_pred cccccceeeehhhhcCCCCCCccc--hh-hhhhhCHHHHHHhcccceEEEEEEcCCch--HH------hHHHHHHHHHHH
Confidence 37899999888844 44444333 33 33333 357788887 78898888887 21 233466778777
Q ss_pred hhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHhcCCcc-----cccHHHHHHH
Q 018557 117 PEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEW-WGKTHGLLIEGGLTYDAIKKSVSNALIAF-----RDGVVKLFEF 190 (354)
Q Consensus 117 ~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew-~~~~~~ll~~~glt~~~i~e~v~~~~i~L-----rpG~~efl~~ 190 (354)
.+|.++= |---..|+-.++.++-.+.+....-| ...+.+.+.+-|.. ++ +-.+++ ++.....++.
T Consensus 154 sec~aed--i~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~Gad------vl-KvevPvyveGe~~ea~~~f~~ 224 (306)
T COG3684 154 SECHAED--LPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGAD------VL-KVEVPVYVEGEQEEAAAAFQR 224 (306)
T ss_pred HHhhhcC--CceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCc------eE-EeecceeccCccHHHHHHHHH
Confidence 6655531 11112233344545444221111101 11111111111111 00 112444 6666666666
Q ss_pred HHh-CCCCEEEEecChH
Q 018557 191 LEE-RDIPVLIFSAGLA 206 (354)
Q Consensus 191 L~~-~gipv~I~SaG~~ 206 (354)
+.. -+.|.+++|+|..
T Consensus 225 ~~~~~~lP~i~LSAGV~ 241 (306)
T COG3684 225 QNDHINLPWIYLSAGVS 241 (306)
T ss_pred hhcCCCCCeEEEecCcc
Confidence 665 3699999999985
No 287
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=27.54 E-value=62 Score=31.57 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=28.5
Q ss_pred cccccHHHHHHHHHhC----CCCEEEEecCh----HHHHHHHHHHhcCCCC
Q 018557 179 AFRDGVVKLFEFLEER----DIPVLIFSAGL----ADIIEEVLRQKVHKSF 221 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~----gipv~I~SaG~----~~~Ie~vL~~~~g~~~ 221 (354)
.+.||+.|+++.|+++ |+|+.++|.+- ..+.+.+.++. |...
T Consensus 16 ~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~l-G~~~ 65 (321)
T TIGR01456 16 KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLL-GVDV 65 (321)
T ss_pred cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHc-CCCC
Confidence 4578888888888888 99999999553 33444443444 6533
No 288
>PRK10444 UMP phosphatase; Provisional
Probab=27.17 E-value=33 Score=32.35 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=19.6
Q ss_pred CCceEEEEcCCC-CChhcccCCCccce
Q 018557 282 NRTNVLLLGDHI-GDLGMSDGLKYETR 307 (354)
Q Consensus 282 ~r~~vI~iGDg~-~Dl~ma~gl~~d~v 307 (354)
+..++++|||+. +|+.++.......+
T Consensus 190 ~~~~~v~IGD~~~tDi~~A~~~G~~~v 216 (248)
T PRK10444 190 HSEETVIVGDNLRTDILAGFQAGLETI 216 (248)
T ss_pred CcccEEEECCCcHHHHHHHHHcCCCEE
Confidence 457899999997 89999874434433
No 289
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=26.69 E-value=55 Score=28.71 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.7
Q ss_pred ccccHHHHHHHHHhCCCCEEEEe
Q 018557 180 FRDGVVKLFEFLEERDIPVLIFS 202 (354)
Q Consensus 180 LrpG~~efl~~L~~~gipv~I~S 202 (354)
+.|++.+.|+.|++.|+.++|+|
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvT 52 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVT 52 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEE
T ss_pred cchhHHHHHHHHHhcCCeEEEEe
Confidence 45689999999999999999999
No 290
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=26.67 E-value=66 Score=31.67 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHH--------hcCCcccccHHHHHHHHHhCCCCEEEEecChH
Q 018557 163 GLTYDAIKKSVS--------NALIAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 163 glt~~~i~e~v~--------~~~i~LrpG~~efl~~L~~~gipv~I~SaG~~ 206 (354)
+++++.+.++.. .+..-+.|.+.+++++++++|+.+.|.|.|..
T Consensus 118 ~v~~~~~~ea~~~~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 118 KVDREKFEEAMEPKHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred CCCHHHhhhccCCCEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 566776776421 13355788999999999999999999999964
No 291
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=26.43 E-value=1.7e+02 Score=23.25 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=27.7
Q ss_pred cHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHh
Q 018557 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 183 G~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.+.++.+.++++|+.++.+|....+-++..++..
T Consensus 47 ~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 80 (124)
T PF00578_consen 47 ELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY 80 (124)
T ss_dssp HHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH
T ss_pred HHHHHhhhhccceEEeeecccccccchhhhhhhh
Confidence 3456777788889999999998888888888876
No 292
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=26.42 E-value=67 Score=31.60 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=11.3
Q ss_pred EEEEeccccccc
Q 018557 86 QVIADFDGTLTR 97 (354)
Q Consensus 86 ~Vi~DFDgTIT~ 97 (354)
+|+||.||||..
T Consensus 128 vIvFDLDgTLi~ 139 (301)
T TIGR01684 128 VVVFDLDSTLIT 139 (301)
T ss_pred EEEEecCCCCcC
Confidence 699999999998
No 293
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=26.31 E-value=2.5e+02 Score=27.80 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=47.1
Q ss_pred HhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhCC-CCEEEEecChHHH-HHHHHHHhcCCCCCcceEEee
Q 018557 160 IEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEERD-IPVLIFSAGLADI-IEEVLRQKVHKSFKNVKIVSN 229 (354)
Q Consensus 160 ~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~g-ipv~I~SaG~~~~-Ie~vL~~~~g~~~~ni~IvSN 229 (354)
...|+|+.+|.+.+. -=|.-+..+++.+++.| +++.|-+.....+ ++.-|++.+|. +...|+-+
T Consensus 23 Y~~gltQ~eIA~~Lg----iSR~~v~rlL~~Ar~~GiV~I~i~~~~~~~~~Le~~L~~~fgL--~~a~VVp~ 88 (321)
T COG2390 23 YVEGLTQSEIAERLG----ISRATVSRLLAKAREEGIVKISINSPVEGCLELEQQLKERFGL--KEAIVVPS 88 (321)
T ss_pred HhcCCCHHHHHHHhC----CCHHHHHHHHHHHHHCCeEEEEeCCCCcchHHHHHHHHHhcCC--CeEEEEcC
Confidence 457999999988764 23778889999999999 5666665555544 77888888775 45567665
No 294
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.27 E-value=5.6e+02 Score=24.18 Aligned_cols=121 Identities=21% Similarity=0.271 Sum_probs=72.5
Q ss_pred hcCCCcEEEEEecccc-cccccccCccccchHHHhhcc---ChhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHH
Q 018557 79 MAGPSKLQVIADFDGT-LTRYFINGSRGQSSHGLLQQG---NPEYDAKRQALYEYYHPLEFSPTVPLEEKTKLMEEWWGK 154 (354)
Q Consensus 79 ~~g~~kl~Vi~DFDgT-IT~~~~~g~~~ds~~~il~~~---~~e~~~~~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~~~ 154 (354)
.......-+-++||.+ .+.. ....|.++.-- ++...+-.+.+|+.|.. -+..|+-++-+
T Consensus 81 ~~~~~~~Gi~~~f~~~~~~~n------t~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~--eg~nI~D~dVL--------- 143 (225)
T COG2761 81 EELAEEEGIDFNFDAIVPAPN------TLDAHRLIKAAELQGKAQDRFLEALFEAYFE--EGRNIGDEDVL--------- 143 (225)
T ss_pred HHhhHhcCcccchhhccCCCc------hHHHHHHHHHHHHhCchHHHHHHHHHHHHhc--cCCCCCcHHHH---------
Confidence 3334444566788887 3331 11223333321 12355667788888853 34556655432
Q ss_pred HHHHHHhcCCCHHHHHHHHHhcCCcccccHHHHHHHHHhC---CCCEEEE------ecCh-HHHHHHHHHHhcCC
Q 018557 155 THGLLIEGGLTYDAIKKSVSNALIAFRDGVVKLFEFLEER---DIPVLIF------SAGL-ADIIEEVLRQKVHK 219 (354)
Q Consensus 155 ~~~ll~~~glt~~~i~e~v~~~~i~LrpG~~efl~~L~~~---gipv~I~------SaG~-~~~Ie~vL~~~~g~ 219 (354)
.++..+.|+..+++.+.+.+. ..+.-+.+=.+..++. |+|++|+ ||.- .++++.+|++.++.
T Consensus 144 -~diA~~~GLD~~~~~~~L~s~--~~~~avr~d~~~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 144 -ADIAEEVGLDREEFKADLASD--AAKDAVRQDEAAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred -HHHHHHhCCCHHHHHHHHhCh--HHHHHHHHHHHHHHHCCCccCceEEEcCcEeecCCCCHHHHHHHHHHHHhc
Confidence 234456899999999988753 4555555555566664 5899998 4444 37888888877553
No 295
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=26.11 E-value=2.4e+02 Score=29.26 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=35.4
Q ss_pred chhhhhhhhcCCC------C-CCCC-CCCCCccccccccchhhhhhhccCCCceEECC-hhHHHHHHHHHHhcC
Q 018557 17 HLANAISQQLHHF------L-PSKY-CCTSSPRVWNRCCSAQNKMENQDLSKFTIKGD-PQSLQNKISQIRMAG 81 (354)
Q Consensus 17 ~~~~~~~~~~~~~------~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~d-~~~~~~k~~~~~~~g 81 (354)
.|+.-+-+|-|+. . |.++ +....+++-.. ...|++.. ...|.+-| |+.+.+||.++..++
T Consensus 163 ELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLd----g~KMSKS~-~n~I~L~Ds~~~I~kKI~~A~TDs 231 (431)
T PRK12284 163 EMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLD----GRKMSKSY-DNTIPLFAPREELKKAIFSIVTDS 231 (431)
T ss_pred HHHHHHHHHHhhhcCCcccCCCccccccccccccCCC----CccccCCC-CCEeeecCCHHHHHHHHhcCCCCC
Confidence 4555566665432 2 2233 33344555442 25888665 34666666 788999999887663
No 296
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=24.88 E-value=68 Score=30.03 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=25.7
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChH
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~ 206 (354)
.-+++.+.++++.+++.|+++.|-|+|.-
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 34568999999999999999999999975
No 297
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.86 E-value=2.2e+02 Score=26.77 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=43.2
Q ss_pred CceEECChhHHHHHHHHHHhcCCCcEEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCCCCCCCCC
Q 018557 60 KFTIKGDPQSLQNKISQIRMAGPSKLQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHPLEFSPTV 139 (354)
Q Consensus 60 ~~v~i~d~~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p~E~d~~i 139 (354)
..++..||..+.+.++ +.|++.+ .+.|.|+++... +.-..++++ +-+...|+++++-+
T Consensus 25 ~~~~~~dP~~~A~~~~---~~ga~~l-hivDLd~a~~g~-------~~n~~~i~~-----------i~~~~~~v~vGGGI 82 (241)
T PRK14114 25 TIFYEKDPAELVEKLI---EEGFTLI-HVVDLSKAIENS-------VENLPVLEK-----------LSEFAEHIQIGGGI 82 (241)
T ss_pred ceEECCCHHHHHHHHH---HCCCCEE-EEEECCCcccCC-------cchHHHHHH-----------HHhhcCcEEEecCC
Confidence 4467889999998866 5777765 568999998762 233333332 22222478888877
Q ss_pred CHHHHHHHH
Q 018557 140 PLEEKTKLM 148 (354)
Q Consensus 140 s~~Ek~~~m 148 (354)
...|.++.+
T Consensus 83 rs~e~~~~~ 91 (241)
T PRK14114 83 RSLDYAEKL 91 (241)
T ss_pred CCHHHHHHH
Confidence 776655543
No 298
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=24.80 E-value=1.9e+02 Score=25.97 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=39.2
Q ss_pred cHHHHHHHHHhCCC--CEEEEecChHHHHHHHHHHhcCCCCCcceEEee-eeEEcCCCcEEecC
Q 018557 183 GVVKLFEFLEERDI--PVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSN-RMVFDKDGHLVSFK 243 (354)
Q Consensus 183 G~~efl~~L~~~gi--pv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN-~~~fd~dG~l~gf~ 243 (354)
++.+.+..|++.|+ .++|..+|+++-. .|+.. +|+.++++= +..|...|.-++|+
T Consensus 52 av~~a~~~L~~~Gf~PDvI~~H~GWGe~L--flkdv----~P~a~li~Y~E~~y~~~g~d~~FD 109 (171)
T PF12000_consen 52 AVARAARQLRAQGFVPDVIIAHPGWGETL--FLKDV----FPDAPLIGYFEFYYRASGADVGFD 109 (171)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCCcchhh--hHHHh----CCCCcEEEEEEEEecCCCCcCCCC
Confidence 45567788899998 8999999999554 44443 577676553 34667777777886
No 299
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.79 E-value=68 Score=22.22 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCcccccHHHHHHHHHhCCCC
Q 018557 166 YDAIKKSVSNALIAFRDGVVKLFEFLEERDIP 197 (354)
Q Consensus 166 ~~~i~e~v~~~~i~LrpG~~efl~~L~~~gip 197 (354)
++-++.+.+ .+|.|.+.+.+.|.+.|+|
T Consensus 18 ESLLdrItR----klr~gwKRl~~iLnQpGvP 45 (45)
T PF02061_consen 18 ESLLDRITR----KLRDGWKRLWDILNQPGVP 45 (45)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHcCCCCC
Confidence 444555544 6899999999999999886
No 300
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=24.69 E-value=6e+02 Score=26.12 Aligned_cols=147 Identities=15% Similarity=0.107 Sum_probs=88.0
Q ss_pred CCceEECChhHHHHHHHHHHhcCCCcEEEEEe---cccccccccccCccc------c-chHHHhh-cc--ChhHHHHHHH
Q 018557 59 SKFTIKGDPQSLQNKISQIRMAGPSKLQVIAD---FDGTLTRYFINGSRG------Q-SSHGLLQ-QG--NPEYDAKRQA 125 (354)
Q Consensus 59 ~~~v~i~d~~~~~~k~~~~~~~g~~kl~Vi~D---FDgTIT~~~~~g~~~------d-s~~~il~-~~--~~e~~~~~~~ 125 (354)
.+-+.+.....+.+-+..|.+.+...+.|+-+ +-|.||..+.-.... + ....++. .. .++..++...
T Consensus 152 ~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~ 231 (450)
T TIGR01302 152 EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEA 231 (450)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHH
Confidence 36677888888999999999999988877654 234455432100000 0 0000000 00 1345677778
Q ss_pred HHHh-hCCCCCCCCCCHHHHHHHHHHHHHHHH-HH--HHhcCCCHHHHHHHHHhcCCcc----ccc--------------
Q 018557 126 LYEY-YHPLEFSPTVPLEEKTKLMEEWWGKTH-GL--LIEGGLTYDAIKKSVSNALIAF----RDG-------------- 183 (354)
Q Consensus 126 L~~~-y~p~E~d~~is~~Ek~~~m~ew~~~~~-~l--l~~~glt~~~i~e~v~~~~i~L----rpG-------------- 183 (354)
|.+. .--+++|..-...+.+..+.+|..+.+ ++ +....+|.++...++...--.+ -||
T Consensus 232 L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p 311 (450)
T TIGR01302 232 LVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVP 311 (450)
T ss_pred HHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCcc
Confidence 8875 333777766566677777778887663 22 3456788998888776422122 233
Q ss_pred ----HHHHHHHHHhCCCCEEEEecChH
Q 018557 184 ----VVKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 184 ----~~efl~~L~~~gipv~I~SaG~~ 206 (354)
+.+.-+.+++.++| +|+++|..
T Consensus 312 ~~~~i~~~~~~~~~~~vp-viadGGi~ 337 (450)
T TIGR01302 312 QITAVYDVAEYAAQSGIP-VIADGGIR 337 (450)
T ss_pred HHHHHHHHHHHHhhcCCe-EEEeCCCC
Confidence 13455667778888 58888886
No 301
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=24.68 E-value=7.4e+02 Score=25.88 Aligned_cols=146 Identities=12% Similarity=0.041 Sum_probs=91.3
Q ss_pred CCceEECChhHHHHHHHHHHhcCCCcEEEEEecccc----cccccccC-ccccchH--------HHhhccChhHHHHHHH
Q 018557 59 SKFTIKGDPQSLQNKISQIRMAGPSKLQVIADFDGT----LTRYFING-SRGQSSH--------GLLQQGNPEYDAKRQA 125 (354)
Q Consensus 59 ~~~v~i~d~~~~~~k~~~~~~~g~~kl~Vi~DFDgT----IT~~~~~g-~~~ds~~--------~il~~~~~e~~~~~~~ 125 (354)
.+-+.+...+.+.+-+..|.+.+...+.|+ |=||. ||..+.-- ...+.+. +-+....++..+.++.
T Consensus 154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVV-D~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~ 232 (475)
T TIGR01303 154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLV-DADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKA 232 (475)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCEEEEE-cCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHH
Confidence 345667777888999999999999987664 54554 33322100 0001110 0011111455667777
Q ss_pred HHHh-hCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHhcCCCHHHHHHHHHhcCCccc-------------------c
Q 018557 126 LYEY-YHPLEFSPTVPLEEKTKLMEEWWGKTH---GLLIEGGLTYDAIKKSVSNALIAFR-------------------D 182 (354)
Q Consensus 126 L~~~-y~p~E~d~~is~~Ek~~~m~ew~~~~~---~ll~~~glt~~~i~e~v~~~~i~Lr-------------------p 182 (354)
|.+. .-++-+|..-...+.+..|.+|..+.+ .++.....|.+...++++..--.++ |
T Consensus 233 Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~ 312 (475)
T TIGR01303 233 LLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRP 312 (475)
T ss_pred HHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCc
Confidence 7775 445667777777788888889998764 3456678999999998764322222 2
Q ss_pred c---HHHHHHHHHhCCCCEEEEecChH
Q 018557 183 G---VVKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 183 G---~~efl~~L~~~gipv~I~SaG~~ 206 (354)
- ..++.+.+++.|+| +|+++|+.
T Consensus 313 ~~~a~~~~~~~~~~~~~~-viadGgi~ 338 (475)
T TIGR01303 313 QFSAVLECAAEARKLGGH-VWADGGVR 338 (475)
T ss_pred hHHHHHHHHHHHHHcCCc-EEEeCCCC
Confidence 2 23455566888888 58999995
No 302
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=24.33 E-value=34 Score=29.03 Aligned_cols=76 Identities=28% Similarity=0.472 Sum_probs=39.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHhcCCcccccH-HHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCc-----ceEEe
Q 018557 155 THGLLIEGGLTYDAIKKSVSNALIAFRDGV-VKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKN-----VKIVS 228 (354)
Q Consensus 155 ~~~ll~~~glt~~~i~e~v~~~~i~LrpG~-~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~n-----i~IvS 228 (354)
+.+.|.+.|++.+.+.++ .+-.-|+- ..++++|+++|++ ...|.+. |....+ ...+.
T Consensus 14 a~~YL~~Rgl~~e~i~~F----~lGyap~~~~~l~~~l~~~~~~------------~~~l~~~-GL~~~~~~~~~~d~F~ 76 (128)
T PF08275_consen 14 ALEYLKKRGLSDETIKKF----QLGYAPGNWDSLLEYLKKKGFS------------LEELLEA-GLIRKNENGGYYDFFR 76 (128)
T ss_dssp HHHHHHHTT--HHHHHHT----T-EEE-SCSCHHHHHHCCCCHH------------HHHHCCT-TCEECCTTTEEEETTT
T ss_pred HHHHHHHcCCCHHHHHHh----CCCcccCcHHHHHHHHHhcccc------------HHHHHHC-CCcEEcCCCCcccccC
Confidence 344555788988777665 34444433 5567777666532 2333333 321111 23455
Q ss_pred eeeEE---cCCCcEEecCCCcc
Q 018557 229 NRMVF---DKDGHLVSFKGKTI 247 (354)
Q Consensus 229 N~~~f---d~dG~l~gf~~~~i 247 (354)
|++.| |..|+++||.|..+
T Consensus 77 ~RiifPI~d~~G~vvgF~gR~l 98 (128)
T PF08275_consen 77 GRIIFPIRDERGRVVGFGGRRL 98 (128)
T ss_dssp TEEEEEEE-TTS-EEEEEEEES
T ss_pred CeEEEEEEcCCCCEEEEecccC
Confidence 66654 88999999998666
No 303
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=24.21 E-value=2.3e+02 Score=26.63 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHhcCCcccccHHHHHHHHHhCCCCEEEE-----ecChHHHHHHHHHHh
Q 018557 164 LTYDAIKKSVSNALIAFRDGVVKLFEFLEERDIPVLIF-----SAGLADIIEEVLRQK 216 (354)
Q Consensus 164 lt~~~i~e~v~~~~i~LrpG~~efl~~L~~~gipv~I~-----SaG~~~~Ie~vL~~~ 216 (354)
++++++.+.+. .|+.-..++-..|++.++|++|+ +||-+..|..+++..
T Consensus 2 ~~k~e~~~~l~----~L~~~L~~lQ~~l~~~~~~vlIv~eG~DaAGKg~~I~~l~~~l 55 (230)
T TIGR03707 2 MSRKEYEAELE----RLQIELVKLQAWVKETGARVVIVFEGRDAAGKGGTIKRITEHL 55 (230)
T ss_pred CCHHHHHHHHH----HHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCchHHHHHHHHhc
Confidence 34555555444 46666777888899999999998 566778998888765
No 304
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=24.13 E-value=58 Score=32.66 Aligned_cols=46 Identities=17% Similarity=-0.068 Sum_probs=25.1
Q ss_pred EEEEEecccccccccccCccccchHHHhhccChhHHHHHHHHHHhhCC
Q 018557 85 LQVIADFDGTLTRYFINGSRGQSSHGLLQQGNPEYDAKRQALYEYYHP 132 (354)
Q Consensus 85 l~Vi~DFDgTIT~~~~~g~~~ds~~~il~~~~~e~~~~~~~L~~~y~p 132 (354)
-.+++|+||||+....+....++... -..-|+..+.+.+|.++-+|
T Consensus 3 k~l~lDrDgtl~~~~~~~y~~~~~~~--~~l~pGV~e~L~~Lk~~G~k 48 (354)
T PRK05446 3 KILFIDRDGTLIEEPPTDFQVDSLDK--LAFEPGVIPALLKLQKAGYK 48 (354)
T ss_pred cEEEEeCCCCccCCCCccccccCccc--ceECcCHHHHHHHHHhCCCe
Confidence 46889999999993111111111111 00116677777777776555
No 305
>PRK05667 dnaG DNA primase; Validated
Probab=24.09 E-value=9.1e+02 Score=25.90 Aligned_cols=75 Identities=23% Similarity=0.398 Sum_probs=45.3
Q ss_pred HHHHHhcCCCHHHHHHHHHhcCCcccc-cHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCC------cceEEe
Q 018557 156 HGLLIEGGLTYDAIKKSVSNALIAFRD-GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFK------NVKIVS 228 (354)
Q Consensus 156 ~~ll~~~glt~~~i~e~v~~~~i~Lrp-G~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~------ni~IvS 228 (354)
.+.|.+.|++.+.+.++ ++-.-| +...++++|.++|++. ..|... |.... --..|-
T Consensus 134 ~~YL~~RGls~~~i~~f----~lGyap~~~~~L~~~l~~~~~~~------------~~l~~~-GL~~~~~~~~~~yd~Fr 196 (580)
T PRK05667 134 RQYLYKRGLSEETIERF----GIGYAPDGWDALLKHLGGKGFSE------------KELEEA-GLLIKNEDGGGPYDRFR 196 (580)
T ss_pred HHHHHHcCCCHHHHHHh----CCccCCChHHHHHHHHHhcCCCH------------HHHHHC-CceEecCCCCCcchhcC
Confidence 34567788888776655 344444 5567888998888763 112221 21000 012455
Q ss_pred eeeEE---cCCCcEEecCCCcc
Q 018557 229 NRMVF---DKDGHLVSFKGKTI 247 (354)
Q Consensus 229 N~~~f---d~dG~l~gf~~~~i 247 (354)
|++.| |.+|+++||.|..+
T Consensus 197 ~RimfPI~d~~G~vigF~GR~l 218 (580)
T PRK05667 197 NRIMFPIRDLRGRVIGFGGRVL 218 (580)
T ss_pred CeEEEEEECCCCcEEEEEeeec
Confidence 66655 77899999988655
No 306
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=23.94 E-value=6.6e+02 Score=24.24 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeee
Q 018557 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNR 230 (354)
Q Consensus 181 rpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~ 230 (354)
.+-+.++.+.|+..|+|++++- +-.+-.-..|.+. |.. .-|+|+.
T Consensus 127 ~~~~~~~~~lL~~~gi~~i~ap-~EAdaq~a~l~~~-g~v---~~i~S~D 171 (316)
T cd00128 127 PQMIEEAKELLRLMGIPYIVAP-YEAEAQCAYLAKK-GLV---DAIITED 171 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEECC-cCHHHHHHHHHhC-CCe---eEEEecC
Confidence 3445666688899999998855 4444444455554 421 2588873
No 307
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.81 E-value=1.7e+02 Score=26.24 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEee
Q 018557 181 RDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSN 229 (354)
Q Consensus 181 rpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN 229 (354)
-||+.+-.+.|+.+||..+|.=+..+.|+...-.+.++. ...++.+++
T Consensus 64 vPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~-~~~V~f~aD 111 (171)
T KOG0541|consen 64 VPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGA-NDHVKFVAD 111 (171)
T ss_pred CchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCc-cceEEEEec
Confidence 589999999999999988877777776665555544453 234565554
No 308
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=23.62 E-value=7.9e+02 Score=24.99 Aligned_cols=75 Identities=24% Similarity=0.430 Sum_probs=45.1
Q ss_pred HHHHHhcCCCHHHHHHHHHhcCCccccc-HHHHHHHHHhC-CCCEEEEecChHHHHHHHHHHhcCCCCC-----cceEEe
Q 018557 156 HGLLIEGGLTYDAIKKSVSNALIAFRDG-VVKLFEFLEER-DIPVLIFSAGLADIIEEVLRQKVHKSFK-----NVKIVS 228 (354)
Q Consensus 156 ~~ll~~~glt~~~i~e~v~~~~i~LrpG-~~efl~~L~~~-gipv~I~SaG~~~~Ie~vL~~~~g~~~~-----ni~IvS 228 (354)
.+.|.+.|++.+.+.++ ++-.-|+ ...+.++|.++ |++. ..|.+. |.... --..+-
T Consensus 138 ~~YL~~RGis~e~i~~f----~lGyap~~~~~l~~~l~~k~~~~~------------~~l~~~-Gl~~~~~~g~~~d~Fr 200 (415)
T TIGR01391 138 LDYLQSRGLSDETIDRF----ELGYAPNNWDFLFDFLQNKKGFDL------------ELLAEA-GLLVKKENGKYYDRFR 200 (415)
T ss_pred HHHHHHcCCCHHHHHHc----CCCCCCCcHHHHHHHHHhccCCCH------------HHHHHC-CCeEECCCCCeeeecC
Confidence 45677889998877664 3445554 45678889888 7652 122222 22100 013445
Q ss_pred eeeE---EcCCCcEEecCCCcc
Q 018557 229 NRMV---FDKDGHLVSFKGKTI 247 (354)
Q Consensus 229 N~~~---fd~dG~l~gf~~~~i 247 (354)
|++. +|.+|+++||.+..+
T Consensus 201 ~RiifPi~d~~G~vvgf~gR~~ 222 (415)
T TIGR01391 201 NRIMFPIHDPKGRVVGFGGRAL 222 (415)
T ss_pred CeEEEEEECCCCCEEEEEeeec
Confidence 6554 478899999988655
No 309
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.59 E-value=6.1e+02 Score=25.22 Aligned_cols=93 Identities=23% Similarity=0.190 Sum_probs=58.9
Q ss_pred ccchhhhhhhccCCCceEECCh-hHHHHHHHHHHhcCCCcEEEEEecccccccccc-cCcc-ccchHHHhhccChhHHHH
Q 018557 46 CCSAQNKMENQDLSKFTIKGDP-QSLQNKISQIRMAGPSKLQVIADFDGTLTRYFI-NGSR-GQSSHGLLQQGNPEYDAK 122 (354)
Q Consensus 46 ~~~~~~~~~~~~~~~~v~i~d~-~~~~~k~~~~~~~g~~kl~Vi~DFDgTIT~~~~-~g~~-~ds~~~il~~~~~e~~~~ 122 (354)
-=|.+..|+..+.++.+++.|. ....+||++-.--|-.. ||-..+. .|.. +|.++..|.-+.++ ..+
T Consensus 272 LqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~---------tiEeHRe~GGn~dVDV~~~YLsFFldD-D~k 341 (397)
T KOG2145|consen 272 LQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRD---------TIEEHRELGGNPDVDVSFQYLSFFLDD-DDK 341 (397)
T ss_pred hhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcc---------hHHHHHHhCCCCcceehHHHHHHHhcc-HHH
Confidence 4578889999999999999884 45677777654333322 4444433 3332 47777777766533 467
Q ss_pred HHHHHHhhCCCCCCCCCCHHHHHHHHHHHH
Q 018557 123 RQALYEYYHPLEFSPTVPLEEKTKLMEEWW 152 (354)
Q Consensus 123 ~~~L~~~y~p~E~d~~is~~Ek~~~m~ew~ 152 (354)
+++++..|.. ++|..-|--+...|-.
T Consensus 342 Leq~r~~Y~~----G~mltgEmKk~~ievL 367 (397)
T KOG2145|consen 342 LEQIRKDYTS----GEMLTGEMKKLCIEVL 367 (397)
T ss_pred HHHHHhhccc----cccchhHHHHHHHHHH
Confidence 8888988865 4466555444444433
No 310
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=23.18 E-value=1e+02 Score=28.86 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=15.7
Q ss_pred cCCCcEEEEEecccccccc
Q 018557 80 AGPSKLQVIADFDGTLTRY 98 (354)
Q Consensus 80 ~g~~kl~Vi~DFDgTIT~~ 98 (354)
+...+.++.+|-|||||.-
T Consensus 7 ~r~~~~l~lfdvdgtLt~~ 25 (252)
T KOG3189|consen 7 ARDEETLCLFDVDGTLTPP 25 (252)
T ss_pred hcCCceEEEEecCCccccc
Confidence 3456789999999999983
No 311
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=22.80 E-value=1.5e+02 Score=30.94 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeE
Q 018557 182 DGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMV 232 (354)
Q Consensus 182 pG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~ 232 (354)
.+..+|=+.|++.|+|++|.++.....+..++++. +. ..|++|.-.
T Consensus 55 ~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~-~~----~~v~~n~~~ 100 (461)
T COG0415 55 QSLQALQQSLAELGIPLLVREGDPEQVLPELAKQL-AA----TTVFWNRDY 100 (461)
T ss_pred HHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHh-Cc----ceEEeeeee
Confidence 34556778899999999999999998998988876 32 378888643
No 312
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=22.79 E-value=46 Score=31.17 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=19.9
Q ss_pred CCceEEEEcCCC-CChhcccCCCccce
Q 018557 282 NRTNVLLLGDHI-GDLGMSDGLKYETR 307 (354)
Q Consensus 282 ~r~~vI~iGDg~-~Dl~ma~gl~~d~v 307 (354)
+..++++|||+. +|+.+++.+....+
T Consensus 194 ~~~~~~~VGD~~~~Di~~a~~~G~~~v 220 (249)
T TIGR01457 194 EREETLMVGDNYLTDIRAGIDAGIDTL 220 (249)
T ss_pred CcccEEEECCCchhhHHHHHHcCCcEE
Confidence 356899999997 89999985544433
No 313
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=22.68 E-value=1.7e+02 Score=30.80 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=66.9
Q ss_pred Ccccc--cHHHHHHHHHhCCCCEEEEecCh--HHHHHHHHHHhcCCCCCcceEEe-eeeEEcCCCcEEecCCCccccCCC
Q 018557 178 IAFRD--GVVKLFEFLEERDIPVLIFSAGL--ADIIEEVLRQKVHKSFKNVKIVS-NRMVFDKDGHLVSFKGKTIHSLNK 252 (354)
Q Consensus 178 i~Lrp--G~~efl~~L~~~gipv~I~SaG~--~~~Ie~vL~~~~g~~~~ni~IvS-N~~~fd~dG~l~gf~~~~ih~~nK 252 (354)
..|-| -..|+++.+.++|-+|+++|+=+ ..+++++|... |.++.|++||+ |...+..+ .|.+.
T Consensus 96 evLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~-g~d~~nipiY~S~e~rl~Kn------Sg~LF----- 163 (635)
T COG5610 96 EVLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSF-GPDFNNIPIYMSSEFRLKKN------SGNLF----- 163 (635)
T ss_pred eEeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhc-CCCccCceeeecceeehhcc------cchHH-----
Confidence 34444 45689999999999999999977 58999999987 76666666553 33332111 11111
Q ss_pred CcccccccccccccCCCCCCCCccccccCCCceEEEEcCC-CCChhcccCCCccceeeeeccchH
Q 018557 253 NEHALDMAAPLHEHFGDTDGPNYDNASVKNRTNVLLLGDH-IGDLGMSDGLKYETRISVGFLNDN 316 (354)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~r~~vI~iGDg-~~Dl~ma~gl~~d~vlaiGfL~~~ 316 (354)
..++ ....+ +....+-+||. ..|.-|++.+...+.+++.-|+..
T Consensus 164 -k~Vl------------------k~EnV-d~~~w~H~GDN~~aD~l~pk~LgI~Tlf~~s~l~~~ 208 (635)
T COG5610 164 -KAVL------------------KLENV-DPKKWIHCGDNWVADYLKPKNLGISTLFYISQLLPY 208 (635)
T ss_pred -HHHH------------------hhcCC-ChhheEEecCchhhhhcCccccchhHHHHHHHhhhH
Confidence 1111 00111 23568889985 578888876666667777766544
No 314
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=22.59 E-value=1.6e+02 Score=29.20 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=29.1
Q ss_pred cCCcccccHHHHHHHHHhCCCCEEEEecCh---HHHHHH
Q 018557 176 ALIAFRDGVVKLFEFLEERDIPVLIFSAGL---ADIIEE 211 (354)
Q Consensus 176 ~~i~LrpG~~efl~~L~~~gipv~I~SaG~---~~~Ie~ 211 (354)
+..-++|.+.+++++++++|+.+.|.|.|. .+.++.
T Consensus 71 GEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~ 109 (378)
T PRK05301 71 GEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAA 109 (378)
T ss_pred CccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHH
Confidence 346778999999999999999999999996 245544
No 315
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=22.24 E-value=37 Score=32.71 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=41.8
Q ss_pred CcccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeE
Q 018557 178 IAFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMV 232 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~ 232 (354)
+.-|||+.||+...-+. +.++|++||...+...++... . +.-+|++.++.
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~L-D---~~~~i~~~Rly 179 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDIL-D---PDRKIISHRLY 179 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHc-c---CCCCeeeeeec
Confidence 67799999999988876 899999999999999998865 3 22378888876
No 316
>PLN02645 phosphoglycolate phosphatase
Probab=22.18 E-value=41 Score=32.68 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=19.3
Q ss_pred CCceEEEEcCCC-CChhcccCCCccc
Q 018557 282 NRTNVLLLGDHI-GDLGMSDGLKYET 306 (354)
Q Consensus 282 ~r~~vI~iGDg~-~Dl~ma~gl~~d~ 306 (354)
...++++|||+. +|+.+++......
T Consensus 246 ~~~~~~~VGD~~~~Di~~A~~aG~~~ 271 (311)
T PLN02645 246 EKSQICMVGDRLDTDILFGQNGGCKT 271 (311)
T ss_pred CcccEEEEcCCcHHHHHHHHHcCCCE
Confidence 356899999997 9999988443333
No 317
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.47 E-value=1.8e+02 Score=26.08 Aligned_cols=44 Identities=18% Similarity=0.467 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEee
Q 018557 184 VVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSN 229 (354)
Q Consensus 184 ~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN 229 (354)
+.++++.+.+++.+++++ ||-..+++.+.+.. ...+|++.|+.-
T Consensus 37 ~~~l~~~~~~~~~~vfll-G~~~~v~~~~~~~l-~~~yP~l~i~g~ 80 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLY-GGKPDVLQQLKVKL-IKEYPKLKIVGA 80 (177)
T ss_pred HHHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHH-HHHCCCCEEEEE
Confidence 346777788899999999 55555666665544 334788887764
No 318
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=21.43 E-value=1.4e+02 Score=32.92 Aligned_cols=138 Identities=20% Similarity=0.146 Sum_probs=73.1
Q ss_pred cccccHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCCcceEEeeeeEEcCCCcEEecC-CCccccCCCCcccc
Q 018557 179 AFRDGVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFKNVKIVSNRMVFDKDGHLVSFK-GKTIHSLNKNEHAL 257 (354)
Q Consensus 179 ~LrpG~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~ni~IvSN~~~fd~dG~l~gf~-~~~ih~~nK~~~~l 257 (354)
++|....+.+......|+.+-++++--..+-.+.=++. |.-. |+.==|-.+.-+.|+.+.+-+ ...+...++-..+.
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrl-gmgt-nmypss~llG~~~~~~~~~~~v~elie~adgfAgVf 569 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRL-GMGT-NMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVF 569 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhh-cccc-CcCCchhhccCCCCCCCCCCcHHHHhhhccCccccC
Confidence 45888889999999999999999998877777766654 4311 111001111111122222211 11222111111110
Q ss_pred cccccccccCCCCCCCCccccccCCC-ceEEEEcCCCCChhcccCCCccceeeeeccchHHHhhHhhhcccccEEEEcCC
Q 018557 258 DMAAPLHEHFGDTDGPNYDNASVKNR-TNVLLLGDHIGDLGMSDGLKYETRISVGFLNDNIENNLDNYRNAFDIVYLNDA 336 (354)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~r-~~vI~iGDg~~Dl~ma~gl~~d~vlaiGfL~~~~ee~l~~y~~~fDIV~v~d~ 336 (354)
|-| .|+..+.+..| ..+-+-|||.||....+ .+|..++.. ..-..-..+-|||+..-+
T Consensus 570 ----peh--------Ky~iV~~Lq~r~hi~gmtgdgvndapaLK--kAdigiava-------~atdaar~asdiVltepg 628 (942)
T KOG0205|consen 570 ----PEH--------KYEIVKILQERKHIVGMTGDGVNDAPALK--KADIGIAVA-------DATDAARSASDIVLTEPG 628 (942)
T ss_pred ----HHH--------HHHHHHHHhhcCceecccCCCcccchhhc--ccccceeec-------cchhhhcccccEEEcCCC
Confidence 011 12222233344 56778999999999988 566655532 222223567788887655
Q ss_pred ChH
Q 018557 337 PMW 339 (354)
Q Consensus 337 t~~ 339 (354)
.=.
T Consensus 629 lSv 631 (942)
T KOG0205|consen 629 LSV 631 (942)
T ss_pred chh
Confidence 433
No 319
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=21.40 E-value=1.7e+02 Score=25.48 Aligned_cols=61 Identities=31% Similarity=0.428 Sum_probs=0.0
Q ss_pred EEecccccccccc--cCccccchHHHhhccC-----------hhHHHHHHHHHHh--hCCCCCCCCCCHHHHHHHHHHH
Q 018557 88 IADFDGTLTRYFI--NGSRGQSSHGLLQQGN-----------PEYDAKRQALYEY--YHPLEFSPTVPLEEKTKLMEEW 151 (354)
Q Consensus 88 i~DFDgTIT~~~~--~g~~~ds~~~il~~~~-----------~e~~~~~~~L~~~--y~p~E~d~~is~~Ek~~~m~ew 151 (354)
+.|+||.+..-.. +-.+.+..-.|.+... |+..++++..|.. |.| +..||.+||.....+.
T Consensus 47 ildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly~P---~~dlsveeK~~l~~~~ 122 (138)
T PF04312_consen 47 ILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLYTP---ERDLSVEEKQELAREY 122 (138)
T ss_pred EEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcccCC---CCcCCHHHHHHHHHhh
No 320
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=21.20 E-value=39 Score=32.10 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=18.9
Q ss_pred CCceEEEEcCCC-CChhcccCCCccc
Q 018557 282 NRTNVLLLGDHI-GDLGMSDGLKYET 306 (354)
Q Consensus 282 ~r~~vI~iGDg~-~Dl~ma~gl~~d~ 306 (354)
...++++|||+. +|+.+|+....+.
T Consensus 218 ~~~~~lmIGD~~~tDI~~A~~aGi~s 243 (279)
T TIGR01452 218 DPARTLMVGDRLETDILFGHRCGMTT 243 (279)
T ss_pred ChhhEEEECCChHHHHHHHHHcCCcE
Confidence 357899999995 9999987443443
No 321
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=21.15 E-value=1.8e+02 Score=30.16 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=10.6
Q ss_pred ccchHHHhhHhhhccccc
Q 018557 312 FLNDNIENNLDNYRNAFD 329 (354)
Q Consensus 312 fL~~~~ee~l~~y~~~fD 329 (354)
.|++.+++.+..|...-|
T Consensus 211 ~L~~f~~~~l~~Y~~~r~ 228 (472)
T PRK10674 211 QLRQFCQQGAGEYEQQRD 228 (472)
T ss_pred HHHHHHHHHHHHhccccC
Confidence 456666666667755433
No 322
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=21.03 E-value=1.1e+02 Score=29.65 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=26.6
Q ss_pred CceEECChhHHHHHHHHHHh-cCCCcEEEEEe
Q 018557 60 KFTIKGDPQSLQNKISQIRM-AGPSKLQVIAD 90 (354)
Q Consensus 60 ~~v~i~d~~~~~~k~~~~~~-~g~~kl~Vi~D 90 (354)
..++|++|+.|.+||.++.+ .|.+.+++..+
T Consensus 275 ~~~iiGspe~v~~~l~~~~~~~G~d~~~~~~~ 306 (323)
T TIGR03558 275 SRSIVGSPETVREQLEALAERTGADELMVTTP 306 (323)
T ss_pred CCeEEcCHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 67899999999999998776 59999887664
No 323
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=20.73 E-value=48 Score=30.69 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=16.2
Q ss_pred CceEEEEcCC-CCChhcccC
Q 018557 283 RTNVLLLGDH-IGDLGMSDG 301 (354)
Q Consensus 283 r~~vI~iGDg-~~Dl~ma~g 301 (354)
..++++|||+ .+|+.++..
T Consensus 213 ~~~~~~vGD~~~~Di~~a~~ 232 (242)
T TIGR01459 213 KNRMLMVGDSFYTDILGANR 232 (242)
T ss_pred cccEEEECCCcHHHHHHHHH
Confidence 4589999999 599999873
No 324
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=2.4e+02 Score=28.36 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=32.2
Q ss_pred CcccccHHHHHHHHHhCC-CCEEEEecChHHHHHHHHHHhcC
Q 018557 178 IAFRDGVVKLFEFLEERD-IPVLIFSAGLADIIEEVLRQKVH 218 (354)
Q Consensus 178 i~LrpG~~efl~~L~~~g-ipv~I~SaG~~~~Ie~vL~~~~g 218 (354)
=..-||+..|++.|.+.| .|+.-+|.|.-..-. .|.++++
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~-~L~efi~ 235 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFP-TLQEFIT 235 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHH-HHHHHHh
Confidence 467899999999999998 999999999875553 4566544
No 325
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=20.34 E-value=1.6e+02 Score=28.95 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHhcCCcccccHHHHHHHHHhCC-CCEEEEecChHHHHHHHHHHh
Q 018557 173 VSNALIAFRDGVVKLFEFLEERD-IPVLIFSAGLADIIEEVLRQK 216 (354)
Q Consensus 173 v~~~~i~LrpG~~efl~~L~~~g-ipv~I~SaG~~~~Ie~vL~~~ 216 (354)
.-.+...|-|...|+++.+++.| ++++|+|.|.- ..+++..
T Consensus 86 s~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L 127 (296)
T COG0731 86 SLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEEL 127 (296)
T ss_pred eCCCCcccccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHh
Confidence 34456899999999999999999 79999999987 4455544
No 326
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=20.25 E-value=4.3e+02 Score=21.37 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhCCCCEEEEecChHHHHHHHHHHhcCCCCC----cceEEeeeeEEcCCCcEE
Q 018557 183 GVVKLFEFLEERDIPVLIFSAGLADIIEEVLRQKVHKSFK----NVKIVSNRMVFDKDGHLV 240 (354)
Q Consensus 183 G~~efl~~L~~~gipv~I~SaG~~~~Ie~vL~~~~g~~~~----ni~IvSN~~~fd~dG~l~ 240 (354)
.-.++-+++++.++++-++++.... +.+.+ |.... ........+.+|.+|++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~D~~~~----~~~~~-gv~~~~~~~~~~~~p~~~lid~~G~v~ 123 (140)
T cd03017 67 SVESHAKFAEKYGLPFPLLSDPDGK----LAKAY-GVWGEKKKKYMGIERSTFLIDPDGKIV 123 (140)
T ss_pred CHHHHHHHHHHhCCCceEEECCccH----HHHHh-CCccccccccCCcceeEEEECCCCEEE
Confidence 3456677788888888888877653 22332 43110 011123346667778774
No 327
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=20.15 E-value=1.6e+02 Score=27.18 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=24.4
Q ss_pred CcccccH-HHHHHHHHhCCCCEEEEecChH
Q 018557 178 IAFRDGV-VKLFEFLEERDIPVLIFSAGLA 206 (354)
Q Consensus 178 i~LrpG~-~efl~~L~~~gipv~I~SaG~~ 206 (354)
.-+++.+ .++++.+++.|+++.|.|+|..
T Consensus 81 Pll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 81 AILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred HhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4457775 5999999999999999999984
No 328
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=20.08 E-value=1.8e+02 Score=29.93 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=11.3
Q ss_pred ccchHHHhhHhhhcccccE
Q 018557 312 FLNDNIENNLDNYRNAFDI 330 (354)
Q Consensus 312 fL~~~~ee~l~~y~~~fDI 330 (354)
.|.+.+++.+..|...-|-
T Consensus 209 ~L~~Fl~~~~~~Y~~~Rd~ 227 (475)
T TIGR02766 209 ALTEFINGPLLEYSKNRKK 227 (475)
T ss_pred HHHHHHHHHHHHHhhcCCC
Confidence 5566666666677554443
Done!