BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018558
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 103/195 (52%), Gaps = 17/195 (8%)
Query: 116 LGVRDSLTIDNTHTRD-PQVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPP 174
+G+ + I++ +++ + +A+ C+ VG G +G R+ I++ + +++ +VKP
Sbjct: 102 VGISEDTRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPR 161
Query: 175 IPVTSYRYETTGIRPEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLD 234
V +R +GI+PEH+++AI K+ Q+K D L RILVGH L
Sbjct: 162 EKVVEWRTWVSGIKPEHMKNAITFKEAQKKTADIL--------------EGRILVGHALK 207
Query: 235 HDLDRLQVEYPAIMTRDTAKYPPLMK--TSKLSNSLKYLTQAYLGYDIQIGIQDPYDDCV 292
HDL+ L + +P + RDT+++ P K + SLK LT+ L IQ G +D
Sbjct: 208 HDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDAR 267
Query: 293 ATMRLYMRMKSQAHK 307
ATM LY + K++ K
Sbjct: 268 ATMLLYKKEKTEFEK 282
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 134 VVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLR 193
+A+ C+MVG G G + RV I+++Y ++ YVKP PVT YR +GIRPE+L+
Sbjct: 243 ALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLK 302
Query: 194 DAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTA 253
L+ VQ+++ + L + RILVGH L +DL L +++P RDT
Sbjct: 303 QGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDTQ 348
Query: 254 KYPPLMKTSKLSN-SLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMRMKS--QAHKRED 310
KY P K SL+ L++ LG +Q D A MRLY+ +K ++ R+
Sbjct: 349 KYKPFKSQVKSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMARDR 408
Query: 311 YPLASDP 317
PL + P
Sbjct: 409 RPLLTAP 415
>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX4 PE=3 SV=1
Length = 294
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 89/166 (53%), Gaps = 16/166 (9%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
V++ C+ VG G DG RV I++ Y N++ +V+P PVT +R +GI+P H+ +
Sbjct: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
A+ + Q+++ + L + RILVGH + HDL L + +P M RDT++
Sbjct: 180 AVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPRRMIRDTSR 225
Query: 255 YPPLMK--TSKLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRLY 298
+ P + + + SLK LT+ L DIQ G +D ATM LY
Sbjct: 226 HMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLY 271
>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2
Length = 432
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 23/194 (11%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
+ +A+ C+MVG G G + RV I+++Y ++ YVKP PVT YR +GIRPE+L
Sbjct: 252 KALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 311
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
+ + V++++ + L + RILVGH L +DL L +++P RDT
Sbjct: 312 KQGEEFEVVKKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 357
Query: 253 AKYPPLMKTSKLSN-SLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMRMK-----SQAH 306
K+ P K SLK L++ LG +Q D A MRLY+ +K S A+
Sbjct: 358 QKFKPFRSRVKSGRPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKREWESSTAN 417
Query: 307 KREDYPLASDPQNR 320
+R A+ PQ+R
Sbjct: 418 RRAP---AATPQHR 428
>sp|Q5A3Q0|REXO4_CANAL RNA exonuclease 4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX4 PE=3 SV=1
Length = 285
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 16/183 (8%)
Query: 122 LTIDNTHTRDP-QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSY 180
L+ +++ DP + VAI C+ VG G DG R+ II+ Y ++ YV+P VT +
Sbjct: 103 LSRNDSRKLDPGKYVAIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQERVTDW 162
Query: 181 RYETTGIRPEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRL 240
R +GI+ H++DAI K Q K + + N +ILVGH +++DLD L
Sbjct: 163 RTWVSGIQSYHMQDAIDFKTAQLKTMELINN--------------KILVGHAVNNDLDIL 208
Query: 241 QVEYPAIMTRDTAKYPPLMKTS-KLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYM 299
+ +P M RDT K+P + + S SLK L + ++ DIQIG +D ATM L+
Sbjct: 209 FLSHPKSMIRDTCKFPKFREIAGGKSPSLKKLIKHFIQVDIQIGQHSSVEDARATMLLFR 268
Query: 300 RMK 302
K
Sbjct: 269 LFK 271
>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2
Length = 421
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 103/218 (47%), Gaps = 25/218 (11%)
Query: 88 GPNARRLHQERCQMVSSATTGLNARLANLGVRDSLTIDNTHTRDPQVVAIACKMVGGGSD 147
GP A R+ +E + + + ++ L + LT + VA+ C+MVG G D
Sbjct: 197 GPEAGRVAREMQGITDTRSPTVDKILVKERAFEGLT---------RTVAMDCEMVGVGMD 247
Query: 148 GSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRDAIPLKQVQRKIQD 207
G + RV I++ + ++ YVKP VT YR +GIRPE ++ P K VQ+++ +
Sbjct: 248 GEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDVKKGEPFKVVQKEVSE 307
Query: 208 FLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAKYPPLMKTSKLSN- 266
L R R LVGH + +DL L +++P RDT KY P + K
Sbjct: 308 IL--------------RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKSGRP 353
Query: 267 SLKYLTQAYLGYDIQIGIQDPYDDCVATMRLY-MRMKS 303
SLK L + L +Q G D A MRLY M KS
Sbjct: 354 SLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKS 391
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
+ VA+ C+ VG G DG + RV +++ Y + YV+P VT +R +GI P H+
Sbjct: 112 KFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRTWVSGITPAHM 171
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
+ A+ L++ QR++ L N R+L+GHGL HDL+ L V +P RDT
Sbjct: 172 KQAVTLEEAQRRVAAMLKN--------------RVLIGHGLHHDLEMLMVSHPKAQIRDT 217
Query: 253 AKYPPLMKT--SKLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRLY 298
+ + P + + + SLK L + L DIQ +D A + LY
Sbjct: 218 SMHGPFREKYGAGKTPSLKKLAREVLNIDIQGKEHSSVEDARAALLLY 265
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 95/177 (53%), Gaps = 17/177 (9%)
Query: 135 VAIACKMVGGGSDGSLDLC-GRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLR 193
VA+ C+MVG G + D RV I++ ++ +YV+P +T +R +GI P+H+
Sbjct: 117 VAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMA 176
Query: 194 DAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTA 253
+A L+QVQ+ + + L RILVGH + +DLD L + +P RDT+
Sbjct: 177 EARSLEQVQKDVAEILD--------------GRILVGHAVSNDLDALLLGHPKRDIRDTS 222
Query: 254 KYPPLMKTS-KLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMRMKSQAHKRE 309
K+PP K + S LK L +LG +IQ G +D ATM LY R K +A +RE
Sbjct: 223 KHPPYRKIAGGGSPRLKILASEFLGLNIQDGAHSSVEDAKATMLLYRRDK-EAFERE 278
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
+A+ C+ VG G +G RV +++ + N++ +VKP VT +R +GI P+H+++
Sbjct: 96 IAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHMKN 155
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
A+ KQ Q+++ D L + +ILVGH + HDL+ L + +P DTA+
Sbjct: 156 AVSFKQAQQQLSDIL--------------KDKILVGHAVKHDLEALMLSHPKSKVIDTAR 201
Query: 255 YPPLMK--TSKLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMRMK 302
+ P + S SLK L + L DIQ G +D ATM +Y K
Sbjct: 202 HLPFRQKYAKGKSPSLKKLAKEILNMDIQSGQHSSVEDARATMLIYKSAK 251
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 87/170 (51%), Gaps = 15/170 (8%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
+AI C+MVG G G RV I+D + I+ +YVKP VT++R +GI + +R
Sbjct: 134 IAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMRF 193
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
A ++VQ +I L R RILVGH L HDL+ L + +P RDTAK
Sbjct: 194 ARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIRDTAK 239
Query: 255 YPPLMKTSKLSN-SLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMRMKS 303
+ K + SL+ L Q LG +IQ G +D ATM L+ + KS
Sbjct: 240 FSGFKKYANGRKPSLRVLAQQLLGVEIQGGEHSSIEDARATMLLFRKHKS 289
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
+A+ C+ VG G +G+ RV I++ Y + +F +VKP VT +R +G+ P+H+ +
Sbjct: 100 LAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHMNE 159
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
AI ++ Q + L RILVGH + HDLD L + +P RDT++
Sbjct: 160 AISFQEAQNETSKLL--------------EGRILVGHAIHHDLDALFLSHPKSRIRDTSQ 205
Query: 255 YPPLMKTS-KLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRLY 298
Y P S + SLK L+ +L DIQ +D ATM L+
Sbjct: 206 YKPFRSISMGKTPSLKKLSSHFLKIDIQGSAHSSVEDARATMLLF 250
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 36/215 (16%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
Q +AI C+MVG G +G + RV I++ + +I +V+P PVT YR +G++ L
Sbjct: 131 QYLAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDL 190
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
A +V +++ + L + +IL+GH +D+DL L + +P +TRDT
Sbjct: 191 LGAPQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDT 236
Query: 253 AKYPPLMKTSKLSN-SLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMRMKSQAHKREDY 311
KY PL + +K LK L++ LG IQ G D M LY + HK+E
Sbjct: 237 QKYKPLQEIAKNKRPGLKKLSELLLGVQIQTGAHSSVVDARVAMALY-----RLHKKE-- 289
Query: 312 PLASDPQNRNNYASWRQTELERM-----SPEEMLA 341
+ WRQTE R PE +L
Sbjct: 290 ---------WERSVWRQTEAYRSISSVNKPEHVLG 315
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 36/215 (16%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
Q +AI C+MVG G +G + RV I++ + +I +V+P PVT YR +G++ L
Sbjct: 131 QYLAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDL 190
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
A +V +++ + L + +IL+GH +D+DL L + +P +TRDT
Sbjct: 191 LGAPQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDT 236
Query: 253 AKYPPLMKTSKLSN-SLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMRMKSQAHKREDY 311
KY PL + +K LK L++ LG IQ G D M LY + HK+E
Sbjct: 237 QKYKPLQEIAKNKRPGLKKLSELLLGVQIQTGAHSSVVDARVAMALY-----RLHKKE-- 289
Query: 312 PLASDPQNRNNYASWRQTELERM-----SPEEMLA 341
+ WRQTE R PE +L
Sbjct: 290 ---------WERSVWRQTEAYRSISSVNKPEHVLG 315
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 17/171 (9%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
+AI C+MVG G GS + RV I++ + I+ +V+P VT YR +G+RP+ L+
Sbjct: 136 LAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPKDLKG 195
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
A QVQ ++ + + + ++LVGH + +DL L + +P ++ RDTA
Sbjct: 196 APSFSQVQGEVANLI--------------KGKVLVGHAIQNDLKALLLSHPKVLIRDTAT 241
Query: 255 YPPLMKTSKLS-NSLKYLTQAYLGYDIQIGIQ--DPYDDCVATMRLYMRMK 302
+ PL +K SLK L + LG DIQ+ + +D ATM ++ K
Sbjct: 242 FQPLRDLAKTKYPSLKKLAKLVLGIDIQLEGESHSSVEDARATMAVFRSQK 292
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 17/171 (9%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
+A+ C+MVG D + + RV I++ + ++++ YV+P VT +R +G++ H+RD
Sbjct: 94 IAMDCEMVGVADD--MSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRD 151
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
A ++VQ ++ L N R+LVGH + +DL L + +P M RDT++
Sbjct: 152 APSFEKVQAEVAKILDN--------------RVLVGHAVHNDLKVLLLSHPRRMIRDTSR 197
Query: 255 YPPLMKTSK-LSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMRMKSQ 304
+ K +K + LK L + LG DIQ G D ATM LY ++K +
Sbjct: 198 FSGYRKLAKGRTPGLKKLAEVILGRDIQSGQHSSVQDAQATMELYKKVKKE 248
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 20/172 (11%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
++VAI C+MVG G G + R I++ ++++ Y+ PP + YR +GIR +H+
Sbjct: 178 KMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHM 237
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
+A P K + +I L +I+VGH + +D LQ +P +TRDT
Sbjct: 238 VNATPFKIARGQILKILT--------------GKIVVGHAIHNDFKALQYFHPKSLTRDT 283
Query: 253 AKYPPLMKTS----KLSNSLKYLTQAYLGYDIQIGI--QDPYDDCVATMRLY 298
+ PPL + + + SLK+LT+ L DIQ+G +D ATM LY
Sbjct: 284 SHIPPLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELY 335
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 24/216 (11%)
Query: 88 GPNARRLHQERCQMVSSATTGLNARLANLGVRDSLTIDNTHTRDPQVVAIACKMVGGGSD 147
GP A R+ +E + +A L + LT + VA+ C+MVG G D
Sbjct: 191 GPEAGRIAREMQGVTETAPPTAEKVLVKEKAFEGLT---------RTVAMDCEMVGVGLD 241
Query: 148 GSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRDAIPLKQVQRKIQD 207
G + RV I++ + ++ YV+P VT YR +GIRP+ +++ K VQ ++ +
Sbjct: 242 GEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDIKNGEAFKDVQAEVAE 301
Query: 208 FLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAKYPPLMKTSKLSN- 266
L R R LVGH + +DL L +++P RDT KY P + K
Sbjct: 302 IL--------------RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKSGRP 347
Query: 267 SLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMRMK 302
SLK L + L +Q G D A MRLY K
Sbjct: 348 SLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEK 383
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
VAI C+MVG G G + R I+ + N+++ Y++P +P+ YR +GI +H+R
Sbjct: 111 VAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRK 170
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
A+P + Q++I L + +++VGH L +D L+ +P TRDT
Sbjct: 171 AVPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPRSQTRDTTY 216
Query: 255 YPPLMKTSKLSN----SLKYLTQAYLGYDIQIGI--QDPYDDCVATMRLYMRMKSQAHKR 308
P + L SLK L L IQ+G +D M LY ++ Q ++
Sbjct: 217 VPNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQ 276
Query: 309 EDYPLASDPQNRNNYAS 325
E L + P++R +S
Sbjct: 277 EARSLWTCPEDREPDSS 293
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 20/172 (11%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
++VAI C+MVG G G + R I++ ++++ Y++PP + YR +GIR H+
Sbjct: 194 KMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCHM 253
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
+A P K + +I L +++VGH + +D LQ +P +TRDT
Sbjct: 254 VNATPFKTARSQILKILS--------------GKVVVGHAIHNDYKALQYFHPKSLTRDT 299
Query: 253 AKYPPLMKTS----KLSNSLKYLTQAYLGYDIQIGIQ--DPYDDCVATMRLY 298
++ P L + + ++ SLK+LT+ L DIQ G+ +D AT+ LY
Sbjct: 300 SQIPLLNRKADCPENVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLELY 351
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 20/172 (11%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
++VAI C+MVG G G + R I++ ++++ YV PP + +YR +GIR H+
Sbjct: 193 KMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCHM 252
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
+A P K + +I L ++++GH + +D LQ +P +TRDT
Sbjct: 253 VNATPFKTARSQILKILS--------------GKVVIGHAIHNDYKALQYFHPKSLTRDT 298
Query: 253 AKYPPLMKTS----KLSNSLKYLTQAYLGYDIQIGI--QDPYDDCVATMRLY 298
++ P L + + ++ SLK+LT+ L DIQ+G +D ATM LY
Sbjct: 299 SRIPLLNRKADCPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMELY 350
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 20/172 (11%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
++VAI C+MVG G G + R I++ ++++ Y+ PP + YR +GIR +H+
Sbjct: 174 KMVAIDCEMVGTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQHM 233
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
+A P K + +I L +I+VGH + +D LQ +P +TRDT
Sbjct: 234 VNATPFKIARNQILKILA--------------GKIVVGHAIHNDFKALQYIHPKSLTRDT 279
Query: 253 AKYPPLMKTS----KLSNSLKYLTQAYLGYDIQIGI--QDPYDDCVATMRLY 298
+ P L + + + SLK LT+ L DIQ G +D ATM LY
Sbjct: 280 SHIPLLNRKADCPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMELY 331
>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4
PE=3 SV=1
Length = 406
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 15/169 (8%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
++I C+MVG G G+ + R I+D + + I+ +YV+P VT +R +GI H+
Sbjct: 217 LSIDCEMVGTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWRTHVSGISKRHMAS 276
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
A + VQ + L + RILVGH + HDL+ L E+P RDTAK
Sbjct: 277 ARSFESVQATVAALL--------------KGRILVGHDVKHDLEVLGFEHPHRDIRDTAK 322
Query: 255 YPPLMKTSKLSN-SLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMRMK 302
Y K SL+ L + LG +I G +D M L+ + K
Sbjct: 323 YSGFRKYGHGPKPSLRVLAKEVLGIEIHQGQHSSVEDARVAMLLFRKEK 371
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 20/197 (10%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
VAI C+MVG G G + R I+ + ++++ Y++P +P+ YR +GI +H+
Sbjct: 111 VAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIVDYRTRWSGITRQHMCK 170
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
AIP + Q++I L + +++VGH L +D L+ +P TRDT
Sbjct: 171 AIPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPRSQTRDTTY 216
Query: 255 YPPLMKTSKL----SNSLKYLTQAYLGYDIQIGI--QDPYDDCVATMRLYMRMKSQAHKR 308
P + L SLK L L IQ+G +D M LY ++ Q ++
Sbjct: 217 VPNFLSEPSLHIRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQ 276
Query: 309 EDYPLASDPQNRNNYAS 325
E L + P++R +S
Sbjct: 277 EARSLWTCPEDREPDSS 293
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 28/223 (12%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
VAI C+MVG G G + R ++ ++++ Y++P +P+ YR +GI +H+
Sbjct: 106 VAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMHK 165
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
AIP + Q++I L + +++VGH L +D L+ +P RDT
Sbjct: 166 AIPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPGSQIRDTTY 211
Query: 255 YPPLM-KTSKLSN---SLKYLTQAYLGYDIQIG--IQDPYDDCVATMRLYMRMKSQAHKR 308
P L+ + S L+ SLK L L IQ+G +D + M LY ++ Q ++
Sbjct: 212 VPNLLSQPSSLTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMELYQLVEVQWEQQ 271
Query: 309 EDYPLASDPQNRNNYASWRQTELERMS-----PEEMLAISRSD 346
+ P++R +S T++E+ PE++ +R D
Sbjct: 272 VASTAKAHPEDRGPDSS---TDVEQYMDDQYWPEDLAQSTRGD 311
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 135 VAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHLRD 194
VAI C+MVG G G + R ++ ++++ Y++P +P+ YR +GI +H+
Sbjct: 110 VAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMHK 169
Query: 195 AIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAK 254
AIP + Q++I L + +++VGH L +D L+ +P TRDT
Sbjct: 170 AIPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPRSQTRDTTY 215
Query: 255 YPPLMKTS----KLSNSLKYLTQAYLGYDIQIGIQ--DPYDDCVATMRLYMRMKSQ 304
P L+ + SLK L L IQ+G Q +D + M LY ++ Q
Sbjct: 216 VPNLLSQPSSLIRTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMELYQLVEVQ 271
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 106/198 (53%), Gaps = 40/198 (20%)
Query: 113 LANLGVRDSLTIDNTHTRDPQVVAIACKMV--GGGSDGSLDLCGRVCIIDEYENIIFHAY 170
++++G++ +++T+ +VA+ C+MV G++G + RV ++D +I +
Sbjct: 124 VSDVGMKMKKVMESTN-----MVAVDCEMVLCEDGTEGLV----RVGVVDRDLKVILDEF 174
Query: 171 VKPPIPVTSYRYETTGIRPEHLRDA-IPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILV 229
VKP PV YR + TGI E + +A + + +Q +Q FL G ILV
Sbjct: 175 VKPNKPVVDYRTDITGITAEDIENASLSVVDIQETLQPFLSTG-------------TILV 221
Query: 230 GHGLDHDLDRLQVEYPAIMTRDTA---KYPPLMKTSKLSN-SLKYLTQAYLGYDI-QIGI 284
GH L+ DL+ L++++P ++ DTA KYP T KL SL L ++ LGY++ + G+
Sbjct: 222 GHSLNRDLEVLKIDHPKVI--DTALVFKYP---NTRKLRRPSLNNLCKSILGYEVRKTGV 276
Query: 285 QDPYD---DCVATMRLYM 299
P+D D A M+L +
Sbjct: 277 --PHDCVHDASAAMKLAL 292
>sp|Q6CE69|REXO4_YARLI RNA exonuclease 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX4 PE=3 SV=1
Length = 291
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
+ +A+ C+ VG G +G+ + RV I++ Y +++ YVKP VT +R +G+ P +
Sbjct: 132 KFIALDCEFVGVGPNGARSILARVSIVNYYGHVLMDEYVKPIERVTDWRTWVSGVTPAMV 191
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
+ I + Q +++ L NG R L+GH L +DL L +++P RDT
Sbjct: 192 ANGISFSEAQERVKRLL-NG-------------RTLIGHALINDLAVLGLDHPRADIRDT 237
Query: 253 AKYPPLMKT--SKLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRLY 298
K P KT + SLK++ + + +IQ G D A M L+
Sbjct: 238 QK-PQYFKTVCGCKTPSLKHVMKECVDLNIQQGEHSSVIDAQAAMLLF 284
>sp|Q96AZ6|ISG20_HUMAN Interferon-stimulated gene 20 kDa protein OS=Homo sapiens GN=ISG20
PE=1 SV=2
Length = 181
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
+VVA+ C+MVG G L R +++ + +++ +++P +T YR +G+ P+H+
Sbjct: 6 EVVAMDCEMVGLGPHRESGLA-RCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM 64
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
A P + +I L + +++VGH L HD L+ + DT
Sbjct: 65 VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTIYDT 110
Query: 253 AKYPPLMKTSKLSN----SLKYLTQAYLGYDIQIGI--QDPYDDCVATMRLY 298
+ L + +KL + SL+ L++ L IQ + +D ATM LY
Sbjct: 111 STDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELY 162
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 113 LANLGVRDSLTIDNTHTRDPQVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVK 172
+ LG + S I +T ++++I C+MV DGS L RV +D ++ +VK
Sbjct: 129 VTELGKKKSKVIKST-----RMLSIDCEMVTC-EDGSQALV-RVGAVDRDLKVVLDKFVK 181
Query: 173 PPIPVTSYRYETTGIRPEHL-RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGH 231
P PV Y+ + TG+ E L R + + +Q+K++ FL G ILVGH
Sbjct: 182 PDKPVIDYKTDITGVTAEDLERATLSVADIQKKLRRFLSVG-------------TILVGH 228
Query: 232 GLDHDLDRLQVEYPAIMTRDTAKYPPLMKTSKLSN-SLKYLTQAYLGYDIQI--GIQDPY 288
GL +DL L++++ ++ DT+ + K SL L ++ LG ++++ +
Sbjct: 229 GLHNDLQVLRIDHARVI--DTSYVFEFVDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCV 286
Query: 289 DDCVATMRLYM 299
D A M+L +
Sbjct: 287 HDAAAAMKLVL 297
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 17/175 (9%)
Query: 123 TIDNTHTRDPQVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRY 182
T+D TH + A+ C+M S+ L L R+ +++ +I+ VKP +P+ Y
Sbjct: 215 TVDFTHG-GSHIFALDCEMCL--SEQGLVLT-RISLVNFDNEVIYEELVKPDVPIVDYLT 270
Query: 183 ETTGIRPEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQV 242
+GI E L + K+ R++Q + + KI SR+ IL+GH L +DL +++
Sbjct: 271 RYSGITEEKL--TVGAKKTLREVQ------KDLLKII---SRSDILIGHSLQNDLKVMKL 319
Query: 243 EYPAIMTRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRL 297
++P ++ DTA SLKYL++ +L IQ G D +D A + L
Sbjct: 320 KHPLVV--DTAIIYHHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLEL 372
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2
Length = 631
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 131 DPQVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPE 190
+P+++AI C+MV ++ L++ RV I+D +I+ +VKP PVT Y + +GI E
Sbjct: 273 NPKILAIDCEMVR--TENGLEIA-RVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEE 329
Query: 191 HLRDAIP-LKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMT 249
LR+ L VQ ++ + N +L+GH L+ DL+ L+ +P I+
Sbjct: 330 KLRNVTTVLSDVQSYLKKTVDNN-------------TVLLGHSLNSDLNCLKFTHPHII- 375
Query: 250 RDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQ 281
DTA + SLK+L +L +IQ
Sbjct: 376 -DTANIYNHTRGPPSKPSLKWLATKWLRREIQ 406
>sp|Q66UW5|ISG20_PIG Interferon-stimulated gene 20 kDa protein OS=Sus scrofa GN=Isg20
PE=1 SV=2
Length = 181
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 21/172 (12%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
+VVA+ C+MVG G L R +++ + +++ +++P +T YR +G+ P+H+
Sbjct: 6 EVVAMDCEMVGMGPRRESGLA-RCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHM 64
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDT 252
A P + +I L + +++VGH L HD L+ + DT
Sbjct: 65 VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMNRYTIYDT 110
Query: 253 AKYPPLMKTSKLSN----SLKYLTQAYLGYDIQIGI--QDPYDDCVATMRLY 298
+ L + +KL + SL+ L + L IQ + +D ATM LY
Sbjct: 111 STDMLLWREAKLDHCRRVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMELY 162
>sp|Q9JL16|ISG20_MOUSE Interferon-stimulated gene 20 kDa protein OS=Mus musculus GN=Isg20
PE=1 SV=1
Length = 300
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 19/155 (12%)
Query: 132 PQVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEH 191
P+VVA+ C+MVG G L R I++ + +++ Y++P +T YR + +G+ P+H
Sbjct: 5 PEVVAMDCEMVGLGPQRVSGLA-RCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQH 63
Query: 192 LRDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRD 251
+ A P + + +I L + +++VGH L HD + L+ + D
Sbjct: 64 MVRATPFGEARLEILQLL--------------KGKLVVGHDLKHDFNALKEDMSKYTIYD 109
Query: 252 TAKYPPLMKTSKLS----NSLKYLTQAYLGYDIQI 282
T+ L +KL SL+ L + L +IQ+
Sbjct: 110 TSTDRLLWHEAKLQYYSRVSLRLLCKRLLHKNIQV 144
>sp|Q9P7H2|REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex3 PE=3 SV=1
Length = 540
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 20/182 (10%)
Query: 125 DNTHTRDPQVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYET 184
D+T+++ A+ C++ + L R+ ++ + E+II ++KP + S
Sbjct: 373 DSTNSKQLSHCALDCELCYTTNGMEL---ARLTVVAK-ESIIMDVFIKPKGKILSLNTRF 428
Query: 185 TGIR-PEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVE 243
+GI + L I + Q+ KI++ N + IL+GHGL++DL+ +++
Sbjct: 429 SGIHDAKELESGITMDQMYIKIKELGMN------------KNTILIGHGLENDLNAMRLI 476
Query: 244 YPAIMTRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRL-YMRMK 302
+ ++ DTA + SLKYLT+ YLG IQ D +D V+ ++L + + K
Sbjct: 477 HKRVI--DTALLFTHARGPPFRYSLKYLTKKYLGTTIQTSTHDSEEDAVSALQLVFYKTK 534
Query: 303 SQ 304
S
Sbjct: 535 SN 536
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 34/180 (18%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
+++AI C+MV DGS + RV +D +I +VKP PV YR TG+ + L
Sbjct: 141 EMIAIDCEMVLC-EDGS-EAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDL 198
Query: 193 RDA-IPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTR- 250
A I + +Q K+ F+ S ILVG L+HDL L+V++ ++
Sbjct: 199 EKATISVVDIQEKLLMFI-------------SEDTILVGQSLNHDLKVLKVDHARVIDTS 245
Query: 251 -------DTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQI-GIQDPYD---DCVATMRLYM 299
D + P +K SL YL + LGY++Q G+ P++ D A M+L +
Sbjct: 246 LVFKYNYDGTRRPLRLKRP----SLNYLCKCILGYEVQKEGV--PHNCVHDAEAAMKLVL 299
>sp|Q54U94|REXO4_DICDI RNA exonuclease 4 OS=Dictyostelium discoideum GN=rexo4 PE=3 SV=1
Length = 298
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 21/158 (13%)
Query: 124 IDNTHTRDPQVVAIACKMVG-GGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRY 182
IDN + + +I CK++ G+ G+L G+VCI ++ II+ VKP + +R
Sbjct: 116 IDNLN-ESSKFFSIDCKIIEIEGNKGTL---GKVCIANQNGQIIYEKIVKPMDKIVDFRT 171
Query: 183 ETTGI-RPEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQ 241
+ TG+ R + R+ QVQ++++ L R +ILVGH L HDL L+
Sbjct: 172 KFTGLTRDKVQREGTDFLQVQKEVEKIL--------------RHKILVGHDLVHDLKNLK 217
Query: 242 VEYPAIMTRDTAKYPPLMKTSKLS-NSLKYLTQAYLGY 278
+ + + RD ++ S +SLK + + L +
Sbjct: 218 LAHKKKLLRDATQFTKFFNPDTNSEDSLKSIAKRELNF 255
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 37/240 (15%)
Query: 93 RLHQERCQMVSSATTGLNARLANL--GVRDSL-----TIDNTHTRD--PQVVAIACKMVG 143
R+ Q C + + G ++ G +DSL T +RD P + A+ C+M
Sbjct: 357 RVSQYTCCAAAPGSVGCQVAKQHVRDGRKDSLDGFVETFKKELSRDAYPGIYALDCEMCY 416
Query: 144 GGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL-RDAIPLKQVQ 202
+ L+L RV ++D +++ +VKP + Y +G+ + + +I L QVQ
Sbjct: 417 --TTHGLELT-RVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTSITLPQVQ 473
Query: 203 RKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAKYPPLMKTS 262
+ F S IL+GH L+ DL L++ + ++ DTA P
Sbjct: 474 AILLSFF-------------SAQTILIGHSLESDLLALKLIHSTVL--DTAVLFPHYLGF 518
Query: 263 KLSNSLKYLTQAYLGYDIQIGIQDPY---DDCVATMRLYM-----RMKSQAHKREDYPLA 314
SL+ L YLG IQ QD + +D A ++L M R + Q R P A
Sbjct: 519 PYKRSLRNLAADYLGQIIQDS-QDGHNSSEDANACLQLVMWKVRQRAQIQPRHRSASPAA 577
>sp|Q9SN09|SDN4_ARATH Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana
GN=SDN4 PE=3 SV=1
Length = 322
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 34/152 (22%)
Query: 133 QVVAIACKMV--GGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPE 190
Q++A+ C+MV G++G + RV +D +I +VKP PV YR TG+ E
Sbjct: 74 QMLALDCEMVLCEDGTEGVV----RVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAE 129
Query: 191 HLRDA-IPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMT 249
++ A + L +Q K++ FL G IL+ H + I T
Sbjct: 130 DVQKATLSLVDIQEKLRPFLSAGA-------------ILIDHPI------------VIDT 164
Query: 250 RDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQ 281
KYP K + SL L + LGY++Q
Sbjct: 165 SLVFKYPNSRKLRR--PSLNTLCMSVLGYEVQ 194
>sp|Q6FIU7|REXO3_CANGA RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1
Length = 398
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 25/181 (13%)
Query: 123 TIDNTHTRD-----PQVVAIACKMVGGGSDGSLDLCGRVCIIDEYEN-IIFHAYVKPPIP 176
TI N T D V+A+ C+M G + ++ R+ I+D + + ++ ++P
Sbjct: 223 TIANFLTTDLIDGKENVLALDCEM--GFTTMGYEMV-RLTIVDFFTSKTLYDEIIRPIGE 279
Query: 177 VTSYRYETTGIRPEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHD 236
V + +G+R E D + K + ++D L +R IL+GHGL++D
Sbjct: 280 VIDLNTQFSGVREE---DILYAKDYEDVMEDVLRADMI--------NRNSILIGHGLEND 328
Query: 237 LDRLQVEYPAIMTRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMR 296
L+ +++ + I+ DTA + + NSLK L+ L IQ+G D D +A M
Sbjct: 329 LNVMRLFHTRIL--DTA---IMYSVGRFKNSLKNLSFEILSRKIQLGEHDSSQDAIAAMD 383
Query: 297 L 297
+
Sbjct: 384 I 384
>sp|P53010|PAN2_YEAST PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAN2 PE=1 SV=1
Length = 1115
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 227 ILVGHGLDHDLDRLQVEYPAIMTRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQIGIQD 286
+ VGHGL++D + + P RDTA Y K SL+YL LG +IQ G D
Sbjct: 1011 VFVGHGLNNDFKHININVPRNQIRDTAIY---FLQGKRYLSLRYLAYVLLGMNIQEGNHD 1067
Query: 287 PYDDCVATMRLYMR 300
+D + LY +
Sbjct: 1068 SIEDAHTALILYKK 1081
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 35/232 (15%)
Query: 93 RLHQERCQMVSSATTGLNARLANL--GVRDSL-----TIDNTHTRD--PQVVAIACKMVG 143
R+ Q C + + G ++ G ++SL T +RD P + A+ C+M
Sbjct: 451 RVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCY 510
Query: 144 GGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL-RDAIPLKQVQ 202
+ L+L RV ++D +++ +VKP + Y +G+ + + +I L QVQ
Sbjct: 511 --TTHGLELT-RVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTSITLPQVQ 567
Query: 203 RKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAKYPPLMKTS 262
+ F S IL+GH L+ DL L++ + ++ DTA P
Sbjct: 568 AILLSFF-------------SAQTILIGHSLESDLLALKLIHSTVV--DTAVLFPHYLGF 612
Query: 263 KLSNSLKYLTQAYLGYDIQIGIQDPY---DDCVATMRLYM---RMKSQAHKR 308
SL+ L YL IQ QD + +D A ++L M R ++Q R
Sbjct: 613 PYKRSLRNLAADYLAQIIQDS-QDGHNSSEDASACLQLVMWKVRQRAQIQPR 663
>sp|Q754X1|PAN2_ASHGO PAB-dependent poly(A)-specific ribonuclease subunit PAN2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAN2 PE=3 SV=2
Length = 1162
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 64/159 (40%), Gaps = 31/159 (19%)
Query: 148 GSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL------RDAIPLKQV 201
G DL G V ID+Y H + Y + +GI P L + + + V
Sbjct: 996 GEGDLAG-VPFIDDYIVNTKH--------IEDYLTKYSGIEPGDLDPDTSSKPLVTRRVV 1046
Query: 202 QRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAKYPPLMKT 261
RKI W + G I VGHGL +D + + P TRDTA Y
Sbjct: 1047 LRKI----------WLLLQLGC---IFVGHGLYNDFRNINIHVPKEQTRDTALY---YLQ 1090
Query: 262 SKLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATMRLYMR 300
+ SL+YL A L DIQ G D +D + LY +
Sbjct: 1091 GRRYLSLRYLAYALLDKDIQKGNHDSIEDAYTALVLYRK 1129
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 100/240 (41%), Gaps = 37/240 (15%)
Query: 93 RLHQERCQMVSSATTGLNARLANL--GVRDSL-----TIDNTHTRD--PQVVAIACKMVG 143
R+ Q C + + G ++ G ++SL T +RD P + A+ C+M
Sbjct: 359 RVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCY 418
Query: 144 GGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL-RDAIPLKQVQ 202
+ L+L RV ++D +++ +VKP + Y +G+ + + +I L QVQ
Sbjct: 419 --TTHGLELT-RVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTSITLPQVQ 475
Query: 203 RKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMTRDTAKYPPLMKTS 262
+ F S IL+GH L+ DL L++ + ++ DTA P
Sbjct: 476 AILLSFF-------------SAQTILIGHSLESDLLALKLIHSTVV--DTAVLFPHYLGF 520
Query: 263 KLSNSLKYLTQAYLGYDIQIGIQDPY---DDCVATMRLYM-----RMKSQAHKREDYPLA 314
SL+ L YL IQ QD + +D A ++L M R + Q R P A
Sbjct: 521 PYKRSLRNLAADYLAQIIQDS-QDGHNSSEDANACLQLVMWKVRQRAQIQPRHRSASPAA 579
>sp|Q6CJB5|REXO3_KLULA RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX3 PE=3 SV=1
Length = 478
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 21/166 (12%)
Query: 131 DPQVVAIACKMVGGGSDGSLDLCGRVCIIDEYEN-IIFHAYVKPPIPVTSYRYETTGIRP 189
+ V+A+ C+M + R+ I+D + + +++ +KP + + +GI
Sbjct: 317 EENVLALDCEMAFTSKGYEM---IRITIVDFWSSEVVYDKVIKPLGEIIDLNSKFSGI-- 371
Query: 190 EHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYPAIMT 249
H+ D P K ++C ++ IL+GHGLD+DL +++ + ++
Sbjct: 372 HHIDDTAPTIHEAEKC--YICPS--------MINQNSILIGHGLDNDLRVMRIVHDKVI- 420
Query: 250 RDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATM 295
DTA P K +SLK L+ L IQ G D +D +A M
Sbjct: 421 -DTAVLYP---AGKYKSSLKNLSFEILSRRIQGGEHDSSEDAIAAM 462
>sp|A3CQI2|DPO3_STRSV DNA polymerase III PolC-type OS=Streptococcus sanguinis (strain
SK36) GN=polC PE=3 SV=1
Length = 1462
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
Query: 164 NII--FHAYVKPPIPVTSYRYETTGIRPEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPR 221
NII F ++ P P++++ + TGI EH+R+A PL+QV ++ Q+F C
Sbjct: 453 NIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPLEQVLKEFQEF-C----------- 500
Query: 222 GSRARILVGHGLDHDLDRLQVEY 244
+ +LV H D+ + V Y
Sbjct: 501 --QDSVLVAHNATFDVGFMNVNY 521
>sp|A4VXT1|DPO3_STRSY DNA polymerase III PolC-type OS=Streptococcus suis (strain 05ZYH33)
GN=polC PE=3 SV=1
Length = 1463
Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Query: 164 NII--FHAYVKPPIPVTSYRYETTGIRPEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPR 221
NII F ++ P P++ + + TGI EH+R + PL+QV R+ QDF
Sbjct: 454 NIIAEFDEFIDPGHPLSQFTTDLTGITDEHVRGSKPLEQVLREFQDF------------- 500
Query: 222 GSRARILVGHGLDHDLDRLQVEY 244
+ ++V H D+ + V Y
Sbjct: 501 -CQDSVMVAHNATFDVGFMNVNY 522
>sp|A4W428|DPO3_STRS2 DNA polymerase III PolC-type OS=Streptococcus suis (strain 98HAH33)
GN=polC PE=3 SV=1
Length = 1463
Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Query: 164 NII--FHAYVKPPIPVTSYRYETTGIRPEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPR 221
NII F ++ P P++ + + TGI EH+R + PL+QV R+ QDF
Sbjct: 454 NIIAEFDEFIDPGHPLSQFTTDLTGITDEHVRGSKPLEQVLREFQDF------------- 500
Query: 222 GSRARILVGHGLDHDLDRLQVEY 244
+ ++V H D+ + V Y
Sbjct: 501 -CQDSVMVAHNATFDVGFMNVNY 522
>sp|Q5AL29|REXO3_CANAL RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX3 PE=3 SV=1
Length = 404
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 118 VRDSLTIDNTHTRDPQVVAIACKMVGGGSDGSLDLCGRVCIIDEYEN-IIFHAYVKPPIP 176
++ T +T ++ +V+ I C+M G + +L R+ ID + + + ++KP
Sbjct: 226 TKELFTTTSTKSKS-RVLGIDCEM--GFTTKGFELM-RITAIDYFTSKTVLDIFIKPIGE 281
Query: 177 VTSYRYETTGIRPEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHD 236
+ + +GI L D DFL + M K+ IL+GHGL++D
Sbjct: 282 IVDFNTRYSGIH--ELTD------------DFLSWEQSMEKLGEIMDSETILIGHGLEND 327
Query: 237 LDRLQVEYPAIMTRDTA-KYPPLMKTSKLSN-SLKYLTQAYLGYDIQIGIQDPYDDCVAT 294
++ +++ + I+ DT+ +P KT SLK L +L IQ G D +D +A
Sbjct: 328 MNAMRLIHENII--DTSILFPNKWKTGPTRRWSLKDLAFEFLSRRIQTGEHDSCEDSIAA 385
Query: 295 MRL 297
+ +
Sbjct: 386 IDI 388
>sp|Q4WYA1|REXO3_ASPFU RNA exonuclease 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex3 PE=3 SV=1
Length = 645
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 133 QVVAIACKMVGGGSDGSLDLCGRVCIIDEYENIIFHAYVKPPIPVTSYRYETTGIRPEHL 192
Q V C+M G + L+L + ++ V+P + +G+ PEH
Sbjct: 421 QPVCFDCEM--GYTTLGLELIRLTAVSWPQGKLLLDILVRPMGEILDLNSRFSGVFPEHY 478
Query: 193 RDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARI---------LVGHGLDHDLDRLQVE 243
+ AIP K +G P +RA + L+GH +D+DL+ ++
Sbjct: 479 QKAIPYKSTSSP--STTGDGALQVVESPAAARALLFKFLQPDTPLIGHAIDNDLNACRII 536
Query: 244 YPAIMTRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQI-GIQ--DPYDDCVATMRLYMR 300
+P I+ DT P + + LK L + YL DIQ G Q D +D +AT L +R
Sbjct: 537 HPTII--DTVLLYPHPRGLPIRMGLKALVKKYLDRDIQTKGSQGHDSKEDAIATGDL-VR 593
Query: 301 MKS 303
+K+
Sbjct: 594 VKA 596
>sp|Q750A5|REXO3_ASHGO RNA exonuclease 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX3 PE=3 SV=1
Length = 382
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 131 DPQVVAIACKMVGGGSDGSLDLCG----RVCIIDEYEN-IIFHAYVKPPIPVTSYRYETT 185
+ V+A+ C+M + CG R+ +++ + N ++F V+P + + +
Sbjct: 220 ETNVLALDCEM-------AYTSCGYELIRLTVVEFWTNAVLFDEIVQPLGEIIDLNTQFS 272
Query: 186 GIRPEHLRDAIPLKQVQRKIQDFLCNGEPMWKIRPRGSRARILVGHGLDHDLDRLQVEYP 245
G+ H D K + + FL + IL+GHGL++DL+ L++ +
Sbjct: 273 GV---HEIDRAVAKTFEEAREVFLSPAMI--------NENSILIGHGLENDLNVLRIIHD 321
Query: 246 AIMTRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQIGIQDPYDDCVATM 295
I+ DTA P K +SL+ L L IQ G D +D +A M
Sbjct: 322 KII--DTAILYP---NGKFKSSLRNLAFQELSRRIQTGEHDSSEDAIAAM 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,904,592
Number of Sequences: 539616
Number of extensions: 5643168
Number of successful extensions: 16165
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 431
Number of HSP's that attempted gapping in prelim test: 14884
Number of HSP's gapped (non-prelim): 1715
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)