BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018559
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFT 71
+ KGPWT EED ++ ++Q++GP W + + R K CR RW N+L P +K+ ++T
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 PHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
E+ +I LGN+WA IA LP RTDN +KN+WN+ +++K+
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 48 RCSKSCRLRWTNYLRPGIKRGNFTPHEEGMII-HLQALLGNKWAAIASYLPQRTDNDIKN 106
R C+ RW L P + +G +T E+ +I H+Q +W+ IA +L R +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 107 YWNTHLKKKLKK 118
W+ HL ++KK
Sbjct: 68 RWHNHLNPEVKK 79
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPH 73
KGPWT EED ++ +Q++GP W SV R K CR RW N+L P +K+ ++T
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74 EEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
E+ +I LGN+WA IA LP RTDN IKN+WN+ +++K+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPH 73
K WT EED L ++++G +W+ + N R C+ RW L P + +G +T
Sbjct: 6 KTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64
Query: 74 EEGMIIHLQALLG-NKWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118
E+ +I L G +W+ IA +L R + W+ HL ++KK
Sbjct: 65 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPH 73
KGPWT EED ++ +Q++GP W SV R K CR RW N+L P +K+ ++T
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
E+ +I LGN+WA IA LP RTDN IKN+WN+ +++K+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 RGNFTPHEEGMIIHLQALLG-NKWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118
+G +T E+ +I L G +W+ IA +L R + W+ HL ++KK
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPH 73
KGPWT EED ++ +Q++GP W SV R K CR RW N+L P +K+ ++T
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
E+ +I LGN+WA IA LP RTDN IKN+WN+ +++K+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 RGNFTPHEEGMIIHLQALLG-NKWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118
+G +T E+ +I L G +W+ IA +L R + W+ HL ++KK
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL--RCSKSCRLRWTNYLRPGIKRGNFT 71
KGP+T ED ++ Y++E+GP NW P T L R K CR RW N+L P + + +T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 PHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
P E+ I LG+KW+ IA +P RTDN IKN WN+ + K++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 89.4 bits (220), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPH 73
KGPWT EED ++ ++++G W + + R K CR RW N+L P +K+ ++T
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74 EEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
E+ +I +LGN+WA IA LP RTDN +KN+WN+ +K+K+
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 63 PGIKRGNFTPHEEGMIIHLQALLGNK-WAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118
P + +G +T E+ +I L G K W IA +L R + W+ HL ++KK
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKK 59
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTP 72
KK +TPEED +L + +HG +W+ + T R ++ CR RW NYL P I +T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHG-SDWKMIAA-TFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73 HEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNT 110
E+ +++ G +WA IA + P RTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 66 KRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHL 112
K+ FTP E+ M+ A G+ W IA+ P R ++ W +L
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPH 73
K +T EED+ L + +G +W + + + R + CR RW NY+ P ++ ++P
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYW 108
E+ ++ A G KW I+ +L R+DN+I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 11 GIKKGPWTPEEDIILVSYIQEHGP 34
++ PW+PEED++L E+GP
Sbjct: 50 ALRTDPWSPEEDMLLDQKYAEYGP 73
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 65 IKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
+K+ ++T E+ +I LGN+WA IA LP RTDN IKN+WN+ +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 65 IKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
+K+ ++T E+ ++ LGN+WA IA LP RTDN IKN+WN+ +++K+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
KGPWT EED L+ +Q++GP W SV R K CR RW N+L P
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
KGPWT EED ++ +Q++GP W SV R K CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
KGPWT EED ++ +Q++GP W SV R K CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 17 WTPEEDIILVSYIQEHGPGNWRSVPTNTGLL--RCSKSCRLRWTNYLRPGIKRGNFTPHE 74
W ED IL + + ++G W + + LL + +K C+ RW +L P IK+ ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIAS---LLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68
Query: 75 EG 76
G
Sbjct: 69 SG 70
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW ++ N + R + + RW R G+
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 66
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW ++ N + R + + RW R G+
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW ++ N + R + + RW R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW ++ N + R + + RW R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW ++ N + R + + RW R G+
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 62
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 130 QDSSATSNNTHPFSK--TGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASS 180
Q AT N HPFSK TGN ++ E R NQ + L + S+Y SS
Sbjct: 174 QLEKATGNPKHPFSKFGTGNKYTLETR----PNQEGIDVRQELLKFHSAYYSS 222
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 130 QDSSATSNNTHPFSK--TGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASS 180
Q AT N HPFSK TGN ++ E R NQ + L + S+Y SS
Sbjct: 174 QLEKATGNPKHPFSKFGTGNKYTLETR----PNQEGIDVRQELLKFHSAYYSS 222
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 17 WTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCR 54
W +E+++L+ + G GNW + G R + CR
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR 49
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 130 QDSSATSNNTHPFSK--TGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASS 180
Q AT N HPFSK TGN ++ E R NQ + L + S+Y SS
Sbjct: 174 QLEKATGNPKHPFSKFGTGNKYTLETR----PNQEGIDVRQELLKFHSAYYSS 222
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 130 QDSSATSNNTHPFSK--TGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASS 180
Q AT N HPFSK TGN ++ E R NQ + L + S+Y SS
Sbjct: 203 QLEKATGNPKHPFSKFGTGNKYTLETR----PNQEGIDVRQELLKFHSAYYSS 251
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 130 QDSSATSNNTHPFSK--TGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASS 180
Q AT N HPFSK TGN ++ E R NQ + L + S+Y SS
Sbjct: 174 QLEKATGNPKHPFSKFGTGNKYTLETR----PNQEGIDVRQELLKFHSAYYSS 222
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 130 QDSSATSNNTHPFSK--TGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASS 180
Q AT N HPFSK TGN ++ E R NQ + L + S+Y SS
Sbjct: 161 QLEKATGNPKHPFSKFGTGNKYTLETR----PNQEGIDVRQELLKFHSAYYSS 209
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 130 QDSSATSNNTHPFSK--TGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASS 180
Q AT N HPFSK TGN ++ E R NQ + L + S+Y SS
Sbjct: 174 QLEKATGNPKHPFSKFGTGNKYTLETR----PNQEGIDVRQELLKFHSAYYSS 222
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 130 QDSSATSNNTHPFSK--TGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASS 180
Q AT N HPFSK TGN ++ E R NQ + L + S+Y SS
Sbjct: 174 QLEKATGNPKHPFSKFGTGNKYTLETR----PNQEGIDVRQELLKFHSAYYSS 222
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 27.7 bits (60), Expect = 9.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
K WT EED L ++++G +W+ V N R C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWK-VIANYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 27.7 bits (60), Expect = 9.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
K WT EED L ++++G +W+ V N R C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWK-VIANYLPNRTDVQCQHRWQKVLNP 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,816,541
Number of Sequences: 62578
Number of extensions: 369743
Number of successful extensions: 622
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 57
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)