Query 018559
Match_columns 354
No_of_seqs 271 out of 1391
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 17:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.7E-33 9.3E-38 229.6 11.2 105 11-116 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 8.3E-33 2.8E-37 235.9 11.7 109 14-123 2-110 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.6E-33 1.6E-37 230.1 9.7 105 14-119 1-105 (107)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 2.2E-32 7.4E-37 232.0 10.0 108 8-116 21-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 4.4E-32 1.5E-36 230.3 11.0 106 8-115 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.9E-31 6.5E-36 233.5 5.4 117 11-128 3-120 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.5E-30 1.5E-34 224.8 10.3 108 8-116 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1.1E-22 3.6E-27 172.4 4.5 88 40-128 1-89 (128)
9 2dim_A Cell division cycle 5-l 99.8 2.8E-21 9.6E-26 148.6 3.7 67 8-75 3-69 (70)
10 2dim_A Cell division cycle 5-l 99.7 1E-17 3.5E-22 128.7 6.9 65 62-126 4-69 (70)
11 1ign_A Protein (RAP1); RAP1,ye 99.7 2.4E-17 8.2E-22 154.4 8.2 106 9-115 3-200 (246)
12 2llk_A Cyclin-D-binding MYB-li 99.7 2.2E-17 7.6E-22 129.4 5.6 59 54-113 10-68 (73)
13 2din_A Cell division cycle 5-l 99.7 7.6E-17 2.6E-21 122.5 6.9 61 60-121 2-62 (66)
14 2d9a_A B-MYB, MYB-related prot 99.6 5.9E-17 2E-21 120.8 4.1 57 9-66 3-59 (60)
15 1gvd_A MYB proto-oncogene prot 99.6 9.2E-17 3.2E-21 116.6 4.3 52 12-64 1-52 (52)
16 2cu7_A KIAA1915 protein; nucle 99.6 4.2E-16 1.4E-20 120.5 8.2 58 61-118 3-60 (72)
17 2d9a_A B-MYB, MYB-related prot 99.6 2.2E-16 7.6E-21 117.7 5.9 56 62-117 3-59 (60)
18 2juh_A Telomere binding protei 99.6 1.2E-16 4.2E-21 136.1 3.4 82 9-91 12-103 (121)
19 1guu_A C-MYB, MYB proto-oncoge 99.6 1.5E-16 5E-21 115.4 3.2 52 12-64 1-52 (52)
20 1guu_A C-MYB, MYB proto-oncoge 99.6 9.3E-16 3.2E-20 111.1 6.4 50 65-114 1-51 (52)
21 1ity_A TRF1; helix-turn-helix, 99.6 2.7E-16 9.4E-21 120.5 3.6 63 9-71 5-68 (69)
22 2roh_A RTBP1, telomere binding 99.6 5.1E-16 1.7E-20 132.5 5.4 79 9-88 26-114 (122)
23 1gvd_A MYB proto-oncogene prot 99.6 1.6E-15 5.5E-20 110.0 6.3 50 65-114 1-51 (52)
24 1ity_A TRF1; helix-turn-helix, 99.6 2.5E-15 8.6E-20 115.1 7.5 62 60-121 3-67 (69)
25 3sjm_A Telomeric repeat-bindin 99.5 1.4E-15 4.7E-20 115.9 2.8 55 12-66 9-64 (64)
26 1w0t_A Telomeric repeat bindin 99.5 7.8E-15 2.7E-19 107.0 6.6 49 66-114 1-52 (53)
27 1x41_A Transcriptional adaptor 99.5 1.9E-15 6.4E-20 113.2 3.3 55 9-64 3-57 (60)
28 1x41_A Transcriptional adaptor 99.5 6.6E-15 2.2E-19 110.2 6.1 53 62-114 3-56 (60)
29 2yum_A ZZZ3 protein, zinc fing 99.5 9E-15 3.1E-19 113.5 6.6 60 62-121 3-68 (75)
30 3osg_A MYB21; transcription-DN 99.5 7.6E-15 2.6E-19 124.2 5.2 68 62-129 6-73 (126)
31 3sjm_A Telomeric repeat-bindin 99.5 2E-14 7E-19 109.5 6.7 52 65-116 9-63 (64)
32 1gv2_A C-MYB, MYB proto-oncoge 99.5 7.8E-15 2.7E-19 119.8 4.3 65 64-128 1-66 (105)
33 2din_A Cell division cycle 5-l 99.5 2.4E-15 8.1E-20 114.2 -0.1 59 7-68 2-60 (66)
34 1w0t_A Telomeric repeat bindin 99.5 1.1E-14 3.6E-19 106.3 2.9 50 13-62 1-51 (53)
35 2yum_A ZZZ3 protein, zinc fing 99.5 5E-15 1.7E-19 114.9 1.2 62 8-70 2-68 (75)
36 2elk_A SPCC24B10.08C protein; 99.5 6.5E-14 2.2E-18 104.3 6.7 50 63-112 5-56 (58)
37 2elk_A SPCC24B10.08C protein; 99.5 1.6E-14 5.5E-19 107.6 2.9 52 10-61 5-56 (58)
38 2k9n_A MYB24; R2R3 domain, DNA 99.5 2.6E-14 8.8E-19 117.7 4.3 62 67-128 1-63 (107)
39 2ltp_A Nuclear receptor corepr 99.1 1.1E-14 3.9E-19 117.2 0.0 56 60-115 9-64 (89)
40 3zqc_A MYB3; transcription-DNA 99.4 5.4E-14 1.8E-18 119.6 2.8 63 67-129 2-65 (131)
41 2cu7_A KIAA1915 protein; nucle 99.4 4.4E-14 1.5E-18 109.2 1.5 58 8-67 3-60 (72)
42 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.1E-12 3.8E-17 102.6 6.1 52 63-114 14-69 (73)
43 2aje_A Telomere repeat-binding 99.3 1.4E-12 4.9E-17 108.6 5.9 79 8-86 7-94 (105)
44 2yus_A SWI/SNF-related matrix- 99.3 9.9E-13 3.4E-17 104.1 3.5 53 6-60 10-62 (79)
45 2llk_A Cyclin-D-binding MYB-li 99.3 1E-12 3.4E-17 102.9 3.5 60 3-66 12-71 (73)
46 2ckx_A NGTRF1, telomere bindin 99.3 1.9E-12 6.5E-17 103.6 5.0 69 15-84 1-79 (83)
47 2yus_A SWI/SNF-related matrix- 99.3 2.2E-12 7.5E-17 102.1 5.0 48 64-111 15-62 (79)
48 1ign_A Protein (RAP1); RAP1,ye 99.2 6.3E-12 2.2E-16 117.9 5.6 65 63-128 4-74 (246)
49 2juh_A Telomere binding protei 99.2 7.2E-12 2.5E-16 106.8 5.3 54 61-114 11-69 (121)
50 2ckx_A NGTRF1, telomere bindin 99.2 2.3E-11 7.8E-16 97.3 7.1 48 68-115 1-53 (83)
51 2cqr_A RSGI RUH-043, DNAJ homo 99.2 3.9E-12 1.3E-16 99.5 2.3 55 7-62 11-68 (73)
52 2ltp_A Nuclear receptor corepr 98.8 1.8E-12 6E-17 104.4 0.0 54 7-62 9-62 (89)
53 1x58_A Hypothetical protein 49 99.2 2.9E-11 9.9E-16 92.1 6.3 50 65-114 6-58 (62)
54 2aje_A Telomere repeat-binding 99.2 3.3E-11 1.1E-15 100.4 7.1 53 63-115 9-66 (105)
55 2roh_A RTBP1, telomere binding 99.2 2E-11 6.9E-16 104.1 6.0 51 64-114 28-83 (122)
56 2cjj_A Radialis; plant develop 99.1 8E-11 2.7E-15 96.0 6.5 50 66-115 7-60 (93)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 1.7E-09 5.8E-14 81.2 6.2 48 66-113 11-58 (61)
58 2cjj_A Radialis; plant develop 98.9 4.5E-10 1.5E-14 91.6 1.5 48 13-61 7-57 (93)
59 3hm5_A DNA methyltransferase 1 98.9 4.1E-09 1.4E-13 86.1 7.0 66 51-120 18-88 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.7 1.1E-08 3.9E-13 79.6 6.0 50 64-114 5-58 (72)
61 2eqr_A N-COR1, N-COR, nuclear 98.6 1.2E-08 4.3E-13 76.4 3.4 52 8-61 6-57 (61)
62 2iw5_B Protein corest, REST co 98.6 5.9E-08 2E-12 90.5 6.9 49 66-114 132-180 (235)
63 1x58_A Hypothetical protein 49 98.5 3.3E-08 1.1E-12 75.2 3.2 48 13-62 7-57 (62)
64 2xag_B REST corepressor 1; ami 98.5 1.1E-07 3.7E-12 97.0 5.6 47 68-114 381-427 (482)
65 1wgx_A KIAA1903 protein; MYB D 98.5 2.7E-07 9.2E-12 72.3 6.2 49 66-114 7-59 (73)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.4 6.4E-08 2.2E-12 75.4 1.6 51 10-62 4-57 (72)
67 1fex_A TRF2-interacting telome 98.3 7.9E-07 2.7E-11 66.6 5.2 47 67-113 2-58 (59)
68 1wgx_A KIAA1903 protein; MYB D 98.2 4.4E-07 1.5E-11 71.1 2.1 48 14-62 8-58 (73)
69 1fex_A TRF2-interacting telome 98.1 6E-07 2.1E-11 67.3 1.5 48 14-62 2-58 (59)
70 2iw5_B Protein corest, REST co 98.1 9.5E-07 3.3E-11 82.4 2.4 49 12-62 131-179 (235)
71 2yqk_A Arginine-glutamic acid 98.0 1.3E-05 4.4E-10 60.5 6.8 48 63-110 5-53 (63)
72 1ug2_A 2610100B20RIK gene prod 97.9 2.3E-05 8E-10 63.7 6.9 48 69-116 35-85 (95)
73 4iej_A DNA methyltransferase 1 97.9 3.2E-05 1.1E-09 63.1 7.2 63 55-121 22-89 (93)
74 1ofc_X ISWI protein; nuclear p 97.8 6.1E-05 2.1E-09 72.9 9.9 102 15-117 111-278 (304)
75 4eef_G F-HB80.4, designed hema 97.8 3.2E-06 1.1E-10 66.3 0.3 43 67-109 20-66 (74)
76 2lr8_A CAsp8-associated protei 96.9 3.9E-06 1.3E-10 65.0 0.0 45 69-114 16-63 (70)
77 4eef_G F-HB80.4, designed hema 97.7 9.4E-06 3.2E-10 63.7 1.6 44 14-58 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.6 4.3E-05 1.5E-09 57.6 3.9 50 8-59 3-53 (63)
79 4a69_C Nuclear receptor corepr 97.5 0.00014 4.9E-09 58.9 6.0 45 67-111 43-87 (94)
80 2crg_A Metastasis associated p 97.5 0.00019 6.6E-09 55.2 6.4 43 67-109 8-51 (70)
81 2xag_B REST corepressor 1; ami 97.2 0.00012 4.2E-09 74.7 3.1 48 12-61 378-425 (482)
82 2ebi_A DNA binding protein GT- 97.2 0.00034 1.2E-08 55.0 4.3 50 66-115 3-66 (86)
83 3hm5_A DNA methyltransferase 1 97.0 0.00026 8.9E-09 57.7 2.5 49 12-61 28-80 (93)
84 4a69_C Nuclear receptor corepr 96.9 0.00038 1.3E-08 56.4 2.7 44 14-59 43-86 (94)
85 2crg_A Metastasis associated p 96.9 0.00051 1.7E-08 52.8 2.8 45 13-59 7-52 (70)
86 2ebi_A DNA binding protein GT- 96.8 0.00013 4.3E-09 57.5 -1.1 49 13-61 3-63 (86)
87 2y9y_A Imitation switch protei 96.3 0.017 5.9E-07 57.3 10.0 106 15-120 124-297 (374)
88 4b4c_A Chromodomain-helicase-D 96.3 0.01 3.5E-07 53.1 7.7 46 69-114 136-196 (211)
89 2lr8_A CAsp8-associated protei 94.9 0.0014 4.7E-08 50.8 0.0 47 14-62 14-62 (70)
90 1ug2_A 2610100B20RIK gene prod 95.9 0.0037 1.3E-07 50.9 2.4 48 13-61 32-81 (95)
91 4b4c_A Chromodomain-helicase-D 93.8 0.042 1.4E-06 49.0 3.9 38 5-42 125-162 (211)
92 4iej_A DNA methyltransferase 1 93.4 0.039 1.3E-06 44.9 2.5 49 12-61 28-80 (93)
93 1irz_A ARR10-B; helix-turn-hel 92.7 0.3 1E-05 37.1 6.4 49 65-113 5-58 (64)
94 1ofc_X ISWI protein; nuclear p 91.0 0.35 1.2E-05 46.7 6.5 48 67-114 110-158 (304)
95 2xb0_X Chromo domain-containin 85.2 0.61 2.1E-05 44.3 3.8 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 83.2 0.74 2.5E-05 34.9 2.8 48 12-60 5-56 (64)
97 2xb0_X Chromo domain-containin 70.7 9 0.00031 36.3 7.0 48 67-114 3-55 (270)
98 1u78_A TC3 transposase, transp 66.6 35 0.0012 26.9 8.9 87 16-108 6-100 (141)
99 2o8x_A Probable RNA polymerase 56.2 15 0.00051 25.8 4.4 42 73-115 18-59 (70)
100 2cxy_A BAF250B subunit, HBAF25 55.7 25 0.00085 29.0 6.2 42 77-118 55-108 (125)
101 2jrz_A Histone demethylase jar 55.0 19 0.00066 29.4 5.4 39 77-115 44-94 (117)
102 2lm1_A Lysine-specific demethy 54.9 22 0.00075 28.3 5.6 39 77-115 48-98 (107)
103 2li6_A SWI/SNF chromatin-remod 54.6 10 0.00035 31.0 3.6 39 77-115 53-99 (116)
104 1ku3_A Sigma factor SIGA; heli 50.2 21 0.00071 25.8 4.4 42 73-115 13-58 (73)
105 2eqy_A RBP2 like, jumonji, at 50.0 26 0.00088 28.9 5.4 39 77-115 46-96 (122)
106 1kkx_A Transcription regulator 43.9 14 0.00048 30.7 2.9 40 78-117 53-100 (123)
107 2p7v_B Sigma-70, RNA polymeras 43.2 24 0.0008 25.1 3.7 41 74-115 9-53 (68)
108 2y9y_A Imitation switch protei 43.0 40 0.0014 33.4 6.4 46 67-112 123-170 (374)
109 2jxj_A Histone demethylase jar 41.4 18 0.00062 28.3 3.0 38 77-114 40-89 (96)
110 2rq5_A Protein jumonji; develo 40.2 8.5 0.00029 32.2 1.0 45 36-83 65-113 (121)
111 1c20_A DEAD ringer protein; DN 40.2 47 0.0016 27.4 5.5 40 76-115 55-107 (128)
112 3hug_A RNA polymerase sigma fa 38.3 38 0.0013 25.5 4.4 42 73-115 40-81 (92)
113 2kk0_A AT-rich interactive dom 38.2 43 0.0015 28.4 5.1 39 77-115 68-119 (145)
114 2rq5_A Protein jumonji; develo 36.6 45 0.0015 27.7 4.8 76 14-115 7-97 (121)
115 2li6_A SWI/SNF chromatin-remod 36.2 7.2 0.00024 32.0 -0.1 39 24-63 53-98 (116)
116 1ig6_A MRF-2, modulator recogn 33.1 27 0.00092 27.9 2.8 39 77-115 37-88 (107)
117 1x3u_A Transcriptional regulat 32.9 73 0.0025 22.7 5.0 42 70-114 17-58 (79)
118 2jrz_A Histone demethylase jar 32.8 11 0.00038 30.9 0.5 40 24-63 44-93 (117)
119 1c20_A DEAD ringer protein; DN 31.9 11 0.00038 31.3 0.3 40 24-63 56-106 (128)
120 1or7_A Sigma-24, RNA polymeras 30.3 72 0.0025 26.2 5.2 30 85-115 155-184 (194)
121 1tty_A Sigma-A, RNA polymerase 29.7 65 0.0022 24.1 4.4 41 74-115 22-66 (87)
122 3i4p_A Transcriptional regulat 29.5 65 0.0022 26.9 4.8 48 73-121 3-51 (162)
123 3c57_A Two component transcrip 28.3 83 0.0028 24.0 4.9 44 69-115 27-70 (95)
124 2i7u_A Four-alpha-helix bundle 27.8 13 0.00046 27.1 0.1 11 238-248 28-38 (62)
125 2cxy_A BAF250B subunit, HBAF25 27.8 21 0.00072 29.5 1.4 40 24-63 55-104 (125)
126 3ulq_B Transcriptional regulat 27.6 1.1E+02 0.0038 23.3 5.5 46 67-115 27-72 (90)
127 3cz6_A DNA-binding protein RAP 27.2 38 0.0013 30.1 2.9 23 11-33 111-141 (168)
128 2yqf_A Ankyrin-1; death domain 26.1 1E+02 0.0034 24.6 5.1 35 71-106 14-48 (111)
129 1fse_A GERE; helix-turn-helix 25.9 87 0.003 21.8 4.3 45 68-115 10-54 (74)
130 2k27_A Paired box protein PAX- 24.6 2.8E+02 0.0096 22.4 8.5 78 14-96 23-111 (159)
131 1je8_A Nitrate/nitrite respons 24.3 99 0.0034 22.9 4.5 43 69-114 21-63 (82)
132 2jpc_A SSRB; DNA binding prote 24.0 1.4E+02 0.005 20.0 5.1 38 75-114 3-40 (61)
133 1xsv_A Hypothetical UPF0122 pr 23.6 1.2E+02 0.004 24.1 5.1 40 74-114 29-68 (113)
134 1rp3_A RNA polymerase sigma fa 22.8 1.1E+02 0.0037 25.8 5.1 36 78-114 195-230 (239)
135 3mzy_A RNA polymerase sigma-H 22.4 96 0.0033 24.4 4.4 30 85-115 123-152 (164)
136 3u6r_L Antibody 1:7 (light cha 22.1 19 0.00064 29.8 0.0 25 230-254 118-142 (143)
137 3e7l_A Transcriptional regulat 21.9 1.3E+02 0.0046 21.2 4.6 33 73-106 19-51 (63)
138 2kk0_A AT-rich interactive dom 21.8 42 0.0014 28.5 2.1 40 24-63 68-118 (145)
139 2dbb_A Putative HTH-type trans 21.8 1.5E+02 0.005 24.0 5.5 46 73-119 9-55 (151)
140 3cz6_A DNA-binding protein RAP 21.2 71 0.0024 28.3 3.5 35 52-86 98-141 (168)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2.7e-33 Score=229.62 Aligned_cols=105 Identities=42% Similarity=0.822 Sum_probs=99.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCCcHH
Q 018559 11 GIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWA 90 (354)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~kWs 90 (354)
.+++|+||+|||++|+.+|..||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||.+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHhhhhHh
Q 018559 91 AIASYLPQRTDNDIKNYWNTHLKKKL 116 (354)
Q Consensus 91 kIAk~LpgRT~~QcKnRW~~lLkkkl 116 (354)
.||++|||||+.||++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=8.3e-33 Score=235.94 Aligned_cols=109 Identities=39% Similarity=0.746 Sum_probs=105.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCCcHHHHH
Q 018559 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIA 93 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~kWskIA 93 (354)
||+||+|||++|+.+|..||.++|..||..|+ +|++.||++||.++|+|.+++|+||+|||.+|+++|.+||.+|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhhHhhhccCCc
Q 018559 94 SYLPQRTDNDIKNYWNTHLKKKLKKFQSAA 123 (354)
Q Consensus 94 k~LpgRT~~QcKnRW~~lLkkklkK~~~s~ 123 (354)
.+|||||+.||++||+.+|++.+....+..
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 999999999999999999999988777653
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.98 E-value=4.6e-33 Score=230.06 Aligned_cols=105 Identities=30% Similarity=0.609 Sum_probs=101.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCCcHHHHH
Q 018559 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIA 93 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~kWskIA 93 (354)
||+||+|||++|+.+|..||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhhHhhhc
Q 018559 94 SYLPQRTDNDIKNYWNTHLKKKLKKF 119 (354)
Q Consensus 94 k~LpgRT~~QcKnRW~~lLkkklkK~ 119 (354)
.+|||||++||++||+.++++..+..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999999876654
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=2.2e-32 Score=232.01 Aligned_cols=108 Identities=40% Similarity=0.788 Sum_probs=102.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCC
Q 018559 8 DKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGN 87 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~ 87 (354)
.+|++++|+||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 46889999999999999999999999889999999998 99999999999999999999999999999999999999999
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHhhhhHh
Q 018559 88 KWAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (354)
Q Consensus 88 kWskIAk~LpgRT~~QcKnRW~~lLkkkl 116 (354)
+|..||++|||||+.+|++||+.++++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998763
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=4.4e-32 Score=230.29 Aligned_cols=106 Identities=36% Similarity=0.682 Sum_probs=101.6
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCC
Q 018559 8 DKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGN 87 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~ 87 (354)
.++..++|+||+|||++|+.+|..||. +|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999996 9999999998 99999999999999999999999999999999999999999
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 88 KWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 88 kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
+|..||++|||||+.||++||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998874
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.9e-31 Score=233.53 Aligned_cols=117 Identities=27% Similarity=0.564 Sum_probs=73.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCC-cH
Q 018559 11 GIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGN-KW 89 (354)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~-kW 89 (354)
++++++||+|||++|+.+|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 36799999999999999999999889999999998 99999999999999999999999999999999999999996 69
Q ss_pred HHHHhhCCCCCHHHHHHHHHHhhhhHhhhccCCcCCCCC
Q 018559 90 AAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEPHM 128 (354)
Q Consensus 90 skIAk~LpgRT~~QcKnRW~~lLkkklkK~~~s~~Ed~~ 128 (354)
..||.+|||||+.||++||.++|++.++++.|+.+|+..
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~ 120 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 120 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHH
Confidence 999999999999999999999999999999999887644
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=4.5e-30 Score=224.79 Aligned_cols=108 Identities=41% Similarity=0.784 Sum_probs=103.2
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCC
Q 018559 8 DKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGN 87 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~ 87 (354)
..|.+++|+||+|||++|+.+|..||..+|..||..|+ +|++.||+.||.++|+|.+++++||++||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 47889999999999999999999999888999999998 99999999999999999999999999999999999999999
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHhhhhHh
Q 018559 88 KWAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (354)
Q Consensus 88 kWskIAk~LpgRT~~QcKnRW~~lLkkkl 116 (354)
+|..||++|||||+++|++||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998764
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.86 E-value=1.1e-22 Score=172.42 Aligned_cols=88 Identities=25% Similarity=0.504 Sum_probs=63.9
Q ss_pred ecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHhhhhHhhh
Q 018559 40 VPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGN-KWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118 (354)
Q Consensus 40 IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~-kWskIAk~LpgRT~~QcKnRW~~lLkkklkK 118 (354)
||+.|+ +|++.||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|||||+.||++||.++|++.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788888 99999999999999999999999999999999999999996 6999999999999999999999999999999
Q ss_pred ccCCcCCCCC
Q 018559 119 FQSAALEPHM 128 (354)
Q Consensus 119 ~~~s~~Ed~~ 128 (354)
+.|+.+|+..
T Consensus 80 ~~WT~eEd~~ 89 (128)
T 1h8a_C 80 TSWTEEEDRI 89 (128)
T ss_dssp SCCCHHHHHH
T ss_pred ccCCHHHHHH
Confidence 9999887744
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.8e-21 Score=148.60 Aligned_cols=67 Identities=25% Similarity=0.550 Sum_probs=64.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhH
Q 018559 8 DKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEE 75 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEED 75 (354)
..+.+++|+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 45789999999999999999999999889999999998 99999999999999999999999999997
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=128.66 Aligned_cols=65 Identities=23% Similarity=0.375 Sum_probs=62.2
Q ss_pred CCCCcCCCCChhhHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHhhhhHhhhccCCcCCC
Q 018559 62 RPGIKRGNFTPHEEGMIIHLQALLG-NKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEP 126 (354)
Q Consensus 62 ~P~ikkg~WTeEEDelLleLVk~~G-~kWskIAk~LpgRT~~QcKnRW~~lLkkklkK~~~s~~Ed 126 (354)
.|.+++++||++||++|+++|.+|| ++|..||.+|++||+.||++||+++|++.+++++|+.+||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999999999999998876
No 11
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.69 E-value=2.4e-17 Score=154.36 Aligned_cols=106 Identities=16% Similarity=0.252 Sum_probs=92.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----CceecccCCCccChhhhhhhhhcccCCCCc-----------------
Q 018559 9 KVGIKKGPWTPEEDIILVSYIQEHGPGN-----WRSVPTNTGLLRCSKSCRLRWTNYLRPGIK----------------- 66 (354)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~kyG~~n-----W~~IA~~lg~~Rs~kQCR~RW~n~L~P~ik----------------- 66 (354)
.+.+++++||+|||++|+++|.++|..+ |..||..|+ |||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4567899999999999999999998642 999999998 99999999999999999886
Q ss_pred ------------CCCCChhhHHHHHHHHHH-h------------------------------------------------
Q 018559 67 ------------RGNFTPHEEGMIIHLQAL-L------------------------------------------------ 85 (354)
Q Consensus 67 ------------kg~WTeEEDelLleLVk~-~------------------------------------------------ 85 (354)
+..||.+||-.|+..+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 2
Q ss_pred -----C----CcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 86 -----G----NKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 86 -----G----~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
| ..|..||+++|+||...+|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 1 16999999999999999999999998775
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=129.35 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=47.8
Q ss_pred hhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhh
Q 018559 54 RLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLK 113 (354)
Q Consensus 54 R~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLk 113 (354)
.-||.++|+|.+++++||+|||++|+++|++||++|+.||++| |||++|||+||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 9999999999986543
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.6e-17 Score=122.48 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=58.2
Q ss_pred ccCCCCcCCCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhHhhhccC
Q 018559 60 YLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQS 121 (354)
Q Consensus 60 ~L~P~ikkg~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkklkK~~~ 121 (354)
+|+|.+++++||+|||.+|+++|+.||.+|..||. |+|||+.|||+||+.+|++.+++...
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999999988653
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=5.9e-17 Score=120.84 Aligned_cols=57 Identities=25% Similarity=0.472 Sum_probs=54.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCc
Q 018559 9 KVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIK 66 (354)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ik 66 (354)
.|.+++++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4788999999999999999999999889999999998 99999999999999999875
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=9.2e-17 Score=116.58 Aligned_cols=52 Identities=42% Similarity=0.834 Sum_probs=49.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCC
Q 018559 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ 64 (354)
+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999888999999998 999999999999999984
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.64 E-value=4.2e-16 Score=120.50 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=55.8
Q ss_pred cCCCCcCCCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhHhhh
Q 018559 61 LRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118 (354)
Q Consensus 61 L~P~ikkg~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkklkK 118 (354)
++|.+++++||+|||.+|+++|.+||.+|..||.+|||||+.|||+||+.++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998776
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2.2e-16 Score=117.70 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=52.8
Q ss_pred CCCCcCCCCChhhHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHhhhhHhh
Q 018559 62 RPGIKRGNFTPHEEGMIIHLQALLG-NKWAAIASYLPQRTDNDIKNYWNTHLKKKLK 117 (354)
Q Consensus 62 ~P~ikkg~WTeEEDelLleLVk~~G-~kWskIAk~LpgRT~~QcKnRW~~lLkkklk 117 (354)
+|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.||++||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999998764
No 18
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.62 E-value=1.2e-16 Score=136.13 Aligned_cols=82 Identities=18% Similarity=0.334 Sum_probs=76.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccC----CCccChhhhhhhhhcccC-----CCCcCC-CCChhhHHHH
Q 018559 9 KVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNT----GLLRCSKSCRLRWTNYLR-----PGIKRG-NFTPHEEGMI 78 (354)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l----g~~Rs~kQCR~RW~n~L~-----P~ikkg-~WTeEEDelL 78 (354)
++..++++||+|||+.|+++|++||.++|..|+..+ + +||+.+|++||.++|. |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 567789999999999999999999988999999874 5 8999999999999998 999999 9999999999
Q ss_pred HHHHHHhCCcHHH
Q 018559 79 IHLQALLGNKWAA 91 (354)
Q Consensus 79 leLVk~~G~kWsk 91 (354)
+.++..+|++|.+
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999976
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=1.5e-16 Score=115.37 Aligned_cols=52 Identities=29% Similarity=0.650 Sum_probs=48.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCC
Q 018559 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ 64 (354)
+++++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999889999999998 999999999999999984
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=9.3e-16 Score=111.12 Aligned_cols=50 Identities=30% Similarity=0.594 Sum_probs=46.7
Q ss_pred CcCCCCChhhHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 65 IKRGNFTPHEEGMIIHLQALLGN-KWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 65 ikkg~WTeEEDelLleLVk~~G~-kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
+++++||+|||.+|+++|.+||. +|..||.+|||||+.||++||+++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 899999999999999999999999986
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=2.7e-16 Score=120.51 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=58.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCC-ccChhhhhhhhhcccCCCCcCCCCC
Q 018559 9 KVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGL-LRCSKSCRLRWTNYLRPGIKRGNFT 71 (354)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~-~Rs~kQCR~RW~n~L~P~ikkg~WT 71 (354)
++..++++||+|||++|+.+|.+||.++|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56778999999999999999999998899999999976 8999999999999999999988764
No 22
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.60 E-value=5.1e-16 Score=132.53 Aligned_cols=79 Identities=24% Similarity=0.393 Sum_probs=72.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccC----CCccChhhhhhhhhccc-----CCCCcCCCCChhh-HHHH
Q 018559 9 KVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNT----GLLRCSKSCRLRWTNYL-----RPGIKRGNFTPHE-EGMI 78 (354)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l----g~~Rs~kQCR~RW~n~L-----~P~ikkg~WTeEE-DelL 78 (354)
+...++++||+|||+.|+++|++||.++|..|+..+ + +|++.||++||.+++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 345679999999999999999999999999999863 5 899999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCc
Q 018559 79 IHLQALLGNK 88 (354)
Q Consensus 79 leLVk~~G~k 88 (354)
+.++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=1.6e-15 Score=110.00 Aligned_cols=50 Identities=28% Similarity=0.597 Sum_probs=47.5
Q ss_pred CcCCCCChhhHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 65 IKRGNFTPHEEGMIIHLQALLGN-KWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 65 ikkg~WTeEEDelLleLVk~~G~-kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
+++++||+|||.+|+++|.+||. +|..||.+|+|||+.||++||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 699999999999999999999999976
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=2.5e-15 Score=115.13 Aligned_cols=62 Identities=24% Similarity=0.229 Sum_probs=56.4
Q ss_pred ccCCCCcCCCCChhhHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHhhhhHhhhccC
Q 018559 60 YLRPGIKRGNFTPHEEGMIIHLQALLG-NKWAAIASYLP--QRTDNDIKNYWNTHLKKKLKKFQS 121 (354)
Q Consensus 60 ~L~P~ikkg~WTeEEDelLleLVk~~G-~kWskIAk~Lp--gRT~~QcKnRW~~lLkkklkK~~~ 121 (354)
...+..++++||+|||.+|+++|.+|| ++|..||.+|+ |||+.||++||+++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 345677899999999999999999999 69999999999 999999999999999999877553
No 25
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.54 E-value=1.4e-15 Score=115.95 Aligned_cols=55 Identities=31% Similarity=0.529 Sum_probs=49.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCC-CccChhhhhhhhhcccCCCCc
Q 018559 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG-LLRCSKSCRLRWTNYLRPGIK 66 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg-~~Rs~kQCR~RW~n~L~P~ik 66 (354)
.+|++||+|||++|+++|++||.++|..||..++ .+|++.||++||.++++|+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4789999999999999999999999999998764 379999999999999998864
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=7.8e-15 Score=107.01 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=46.5
Q ss_pred cCCCCChhhHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHhhhh
Q 018559 66 KRGNFTPHEEGMIIHLQALLG-NKWAAIASYLP--QRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 66 kkg~WTeEEDelLleLVk~~G-~kWskIAk~Lp--gRT~~QcKnRW~~lLkk 114 (354)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999875
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.9e-15 Score=113.16 Aligned_cols=55 Identities=20% Similarity=0.503 Sum_probs=51.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCC
Q 018559 9 KVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64 (354)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ 64 (354)
.+.+.+++||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3678999999999999999999999889999999998 999999999999999865
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=6.6e-15 Score=110.20 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=49.7
Q ss_pred CCCCcCCCCChhhHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 62 RPGIKRGNFTPHEEGMIIHLQALLG-NKWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 62 ~P~ikkg~WTeEEDelLleLVk~~G-~kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
.+.+.+++||+|||.+|+++|.+|| ++|..||.+||+||+.||++||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4578899999999999999999999 7999999999999999999999998864
No 29
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=9e-15 Score=113.46 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=55.7
Q ss_pred CCCCcCCCCChhhHHHHHHHHHHhC------CcHHHHHhhCCCCCHHHHHHHHHHhhhhHhhhccC
Q 018559 62 RPGIKRGNFTPHEEGMIIHLQALLG------NKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQS 121 (354)
Q Consensus 62 ~P~ikkg~WTeEEDelLleLVk~~G------~kWskIAk~LpgRT~~QcKnRW~~lLkkklkK~~~ 121 (354)
+|.+.+++||+|||.+|+++|.+|| .+|..||.+|+|||..||++||+.+|.+.++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 5788999999999999999999999 78999999999999999999999999998877654
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.51 E-value=7.6e-15 Score=124.22 Aligned_cols=68 Identities=25% Similarity=0.440 Sum_probs=63.1
Q ss_pred CCCCcCCCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhHhhhccCCcCCCCCC
Q 018559 62 RPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEPHMP 129 (354)
Q Consensus 62 ~P~ikkg~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkklkK~~~s~~Ed~~~ 129 (354)
.+..++++||+|||++|+++|..||.+|..||..|||||+.||+.||.++|.+.++++.|+.+|+...
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L 73 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALL 73 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999998887543
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.51 E-value=2e-14 Score=109.47 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=47.6
Q ss_pred CcCCCCChhhHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHhhhhHh
Q 018559 65 IKRGNFTPHEEGMIIHLQALLG-NKWAAIASYLP--QRTDNDIKNYWNTHLKKKL 116 (354)
Q Consensus 65 ikkg~WTeEEDelLleLVk~~G-~kWskIAk~Lp--gRT~~QcKnRW~~lLkkkl 116 (354)
.++++||+|||++|+++|.+|| .+|..||+.++ +||+.||++||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999865 9999999999999999865
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.50 E-value=7.8e-15 Score=119.79 Aligned_cols=65 Identities=26% Similarity=0.497 Sum_probs=60.6
Q ss_pred CCcCCCCChhhHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHhhhhHhhhccCCcCCCCC
Q 018559 64 GIKRGNFTPHEEGMIIHLQALLGN-KWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEPHM 128 (354)
Q Consensus 64 ~ikkg~WTeEEDelLleLVk~~G~-kWskIAk~LpgRT~~QcKnRW~~lLkkklkK~~~s~~Ed~~ 128 (354)
.+++|+||+|||.+|+++|..||. +|..||.+|||||+.||+.||.++|.+.++++.|+.+|+..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~ 66 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 66 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHH
Confidence 367999999999999999999996 69999999999999999999999999999999999887744
No 33
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.4e-15 Score=114.22 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=53.8
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCC
Q 018559 7 CDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRG 68 (354)
Q Consensus 7 c~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg 68 (354)
...|.+++++||+|||++|+++|+.||. +|..||. ++ +|++.||+.||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 3578999999999999999999999996 9999999 66 7999999999999999877654
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.48 E-value=1.1e-14 Score=106.32 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=46.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCC-ccChhhhhhhhhcccC
Q 018559 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGL-LRCSKSCRLRWTNYLR 62 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~-~Rs~kQCR~RW~n~L~ 62 (354)
++++||+|||++|+++|..||.++|..||..|+. +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999975 6999999999999874
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5e-15 Score=114.92 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCCceecccCCCccChhhhhhhhhcccCCCCcCCCC
Q 018559 8 DKVGIKKGPWTPEEDIILVSYIQEHGP-----GNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~-----~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~W 70 (354)
.+|.+.+++||+|||++|+++|..||. .+|..||..|+ +|++.||+.||++||.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 368899999999999999999999996 68999999998 999999999999999887776643
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=6.5e-14 Score=104.32 Aligned_cols=50 Identities=26% Similarity=0.424 Sum_probs=46.4
Q ss_pred CCCcCCCCChhhHHHHHHHHHHhC-CcHHHHHhhCC-CCCHHHHHHHHHHhh
Q 018559 63 PGIKRGNFTPHEEGMIIHLQALLG-NKWAAIASYLP-QRTDNDIKNYWNTHL 112 (354)
Q Consensus 63 P~ikkg~WTeEEDelLleLVk~~G-~kWskIAk~Lp-gRT~~QcKnRW~~lL 112 (354)
..+.+++||++||.+|+++|.+|| ++|..||++|+ +||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999 89999999999 999999999998764
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=1.6e-14 Score=107.63 Aligned_cols=52 Identities=21% Similarity=0.487 Sum_probs=47.9
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhccc
Q 018559 10 VGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (354)
Q Consensus 10 p~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L 61 (354)
..+.+++||+|||++|+++|++||.++|..||..|+.+|++.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999998899999999986899999999999875
No 38
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.46 E-value=2.6e-14 Score=117.69 Aligned_cols=62 Identities=19% Similarity=0.345 Sum_probs=58.3
Q ss_pred CCCCChhhHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHhhhhHhhhccCCcCCCCC
Q 018559 67 RGNFTPHEEGMIIHLQALLGN-KWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEPHM 128 (354)
Q Consensus 67 kg~WTeEEDelLleLVk~~G~-kWskIAk~LpgRT~~QcKnRW~~lLkkklkK~~~s~~Ed~~ 128 (354)
+|+||+|||++|+++|..||. +|..||.+|||||+.||+.||.++|.+.+++++|+.+|+..
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~ 63 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHH
Confidence 589999999999999999996 79999999999999999999999999999999999887744
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-14 Score=117.23 Aligned_cols=56 Identities=23% Similarity=0.276 Sum_probs=53.2
Q ss_pred ccCCCCcCCCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 60 YLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 60 ~L~P~ikkg~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
.+.|.+++++||+|||.+|+++|.+||.+|..||.+|||||+.||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56788999999999999999999999999999999999999999999999998874
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.41 E-value=5.4e-14 Score=119.60 Aligned_cols=63 Identities=27% Similarity=0.494 Sum_probs=59.4
Q ss_pred CCCCChhhHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHhhhhHhhhccCCcCCCCCC
Q 018559 67 RGNFTPHEEGMIIHLQALLG-NKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEPHMP 129 (354)
Q Consensus 67 kg~WTeEEDelLleLVk~~G-~kWskIAk~LpgRT~~QcKnRW~~lLkkklkK~~~s~~Ed~~~ 129 (354)
+|+||+|||++|+++|..|| .+|..||.+|||||+.||+.||.++|.+.++++.|+.+|+...
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L 65 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETI 65 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHH
Confidence 68999999999999999999 6799999999999999999999999999999999999888543
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=4.4e-14 Score=109.16 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=53.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcC
Q 018559 8 DKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKR 67 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikk 67 (354)
..|.+++++||+|||++|+++|..||. +|..||..|+ +|++.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999996 9999999998 999999999999999876655
No 42
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=1.1e-12 Score=102.64 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=47.8
Q ss_pred CCCcCCCCChhhHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 63 PGIKRGNFTPHEEGMIIHLQALLG----NKWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 63 P~ikkg~WTeEEDelLleLVk~~G----~kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
+.+.+++||.+||.+|++++..|| .+|.+||.+|||||..||++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456789999999999999999999 6899999999999999999999988753
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.32 E-value=1.4e-12 Score=108.58 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=67.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCC---CccChhhhhhhhhccc-----CCCCcCCCCChhhHHH-H
Q 018559 8 DKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG---LLRCSKSCRLRWTNYL-----RPGIKRGNFTPHEEGM-I 78 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg---~~Rs~kQCR~RW~n~L-----~P~ikkg~WTeEEDel-L 78 (354)
.+...++++||+|||+.|+.+|++||.++|..|+..+. .+||+.+|++||.+++ +|.+++|.=+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 35677899999999999999999999999999998652 3899999999999998 6899999888887666 7
Q ss_pred HHHHHHhC
Q 018559 79 IHLQALLG 86 (354)
Q Consensus 79 leLVk~~G 86 (354)
++|...+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777665
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.29 E-value=9.9e-13 Score=104.11 Aligned_cols=53 Identities=21% Similarity=0.451 Sum_probs=49.3
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcc
Q 018559 6 CCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60 (354)
Q Consensus 6 cc~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~ 60 (354)
.+.+....+++||+|||++|+++|++|| ++|..||.+|+ +|++.||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 4456777899999999999999999999 89999999999 99999999999998
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.29 E-value=1e-12 Score=102.93 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=47.2
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCc
Q 018559 3 RPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIK 66 (354)
Q Consensus 3 R~pcc~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ik 66 (354)
|-.....|.+++|+||+|||++|+++|++||. +|..||..| +|++.||+.||.. |....+
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 33455689999999999999999999999995 699999998 6999999999985 443433
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.29 E-value=1.9e-12 Score=103.58 Aligned_cols=69 Identities=22% Similarity=0.415 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeccc----CCCccChhhhhhhhhccc-----CCCCcCC-CCChhhHHHHHHHHHH
Q 018559 15 GPWTPEEDIILVSYIQEHGPGNWRSVPTN----TGLLRCSKSCRLRWTNYL-----RPGIKRG-NFTPHEEGMIIHLQAL 84 (354)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~nW~~IA~~----lg~~Rs~kQCR~RW~n~L-----~P~ikkg-~WTeEEDelLleLVk~ 84 (354)
++||+|||+.|+.+|++||.++|..|+.. ++ +||+.+|++||.+++ .|.+++| +..++...+++.+.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999985 66 899999999999988 6766666 6777777888888764
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=102.13 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=45.1
Q ss_pred CCcCCCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHh
Q 018559 64 GIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTH 111 (354)
Q Consensus 64 ~ikkg~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~l 111 (354)
...+++||++||.+|+++|.+||.+|..||.+|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999866
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.23 E-value=6.3e-12 Score=117.85 Aligned_cols=65 Identities=22% Similarity=0.382 Sum_probs=54.9
Q ss_pred CCCcCCCCChhhHHHHHHHHHHhCCc------HHHHHhhCCCCCHHHHHHHHHHhhhhHhhhccCCcCCCCC
Q 018559 63 PGIKRGNFTPHEEGMIIHLQALLGNK------WAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEPHM 128 (354)
Q Consensus 63 P~ikkg~WTeEEDelLleLVk~~G~k------WskIAk~LpgRT~~QcKnRW~~lLkkklkK~~~s~~Ed~~ 128 (354)
+.+++++||+|||++|+++|.+||++ |..||++|||||++|||+||+.+|++.+... |...++..
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~ 74 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGK 74 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchh
Confidence 35778999999999999999999975 9999999999999999999999999998855 66555433
No 49
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.22 E-value=7.2e-12 Score=106.76 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=49.6
Q ss_pred cCCCCcCCCCChhhHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHhhhh
Q 018559 61 LRPGIKRGNFTPHEEGMIIHLQALLGN-KWAAIASY----LPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 61 L~P~ikkg~WTeEEDelLleLVk~~G~-kWskIAk~----LpgRT~~QcKnRW~~lLkk 114 (354)
+.+..++++||.|||+.|+++|.+||. +|+.|+.. |++||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 455678999999999999999999997 99999998 4999999999999999983
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.20 E-value=2.3e-11 Score=97.34 Aligned_cols=48 Identities=23% Similarity=0.435 Sum_probs=44.8
Q ss_pred CCCChhhHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHhhhhH
Q 018559 68 GNFTPHEEGMIIHLQALLGN-KWAAIASY----LPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 68 g~WTeEEDelLleLVk~~G~-kWskIAk~----LpgRT~~QcKnRW~~lLkkk 115 (354)
++||+|||+.|+++|.+||. +|+.|++. |++||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999997 99999985 89999999999999999755
No 51
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.20 E-value=3.9e-12 Score=99.52 Aligned_cols=55 Identities=15% Similarity=0.364 Sum_probs=50.2
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhC---CCCCceecccCCCccChhhhhhhhhcccC
Q 018559 7 CDKVGIKKGPWTPEEDIILVSYIQEHG---PGNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (354)
Q Consensus 7 c~Kp~lkKG~WT~EEDe~L~~lV~kyG---~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 62 (354)
-+++...+++||++||++|+.+|..|| +.+|..||..|| +|+..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 467788899999999999999999999 358999999999 9999999999998775
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-12 Score=104.43 Aligned_cols=54 Identities=24% Similarity=0.428 Sum_probs=50.5
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccC
Q 018559 7 CDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (354)
Q Consensus 7 c~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 62 (354)
...|.+.+|+||+|||++|+++|..||. +|..||..|+ +|++.||+.||.++|.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKK 62 (89)
Confidence 3467899999999999999999999996 8999999998 9999999999999886
No 53
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=2.9e-11 Score=92.07 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=46.5
Q ss_pred CcCCCCChhhHHHHHHHHHHhCCcHHHHH---hhCCCCCHHHHHHHHHHhhhh
Q 018559 65 IKRGNFTPHEEGMIIHLQALLGNKWAAIA---SYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 65 ikkg~WTeEEDelLleLVk~~G~kWskIA---k~LpgRT~~QcKnRW~~lLkk 114 (354)
..+.+||+|||+.|+++|++||.+|..|+ .++++||..++|+||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 578999999999999998875
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.18 E-value=3.3e-11 Score=100.39 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=48.2
Q ss_pred CCCcCCCCChhhHHHHHHHHHHhCC-cHHHHHhhC----CCCCHHHHHHHHHHhhhhH
Q 018559 63 PGIKRGNFTPHEEGMIIHLQALLGN-KWAAIASYL----PQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 63 P~ikkg~WTeEEDelLleLVk~~G~-kWskIAk~L----pgRT~~QcKnRW~~lLkkk 115 (354)
+..++++||.|||+.|+++|.+||. +|+.|+..+ ++||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3567899999999999999999997 999999965 8999999999999999754
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.18 E-value=2e-11 Score=104.13 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=46.6
Q ss_pred CCcCCCCChhhHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHhhhh
Q 018559 64 GIKRGNFTPHEEGMIIHLQALLGN-KWAAIASY----LPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 64 ~ikkg~WTeEEDelLleLVk~~G~-kWskIAk~----LpgRT~~QcKnRW~~lLkk 114 (354)
..++++||.|||+.|+++|++||. +|..|+.. |++||+.|||+||+++++.
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 457889999999999999999996 99999986 4899999999999999953
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.12 E-value=8e-11 Score=96.04 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=45.8
Q ss_pred cCCCCChhhHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 66 KRGNFTPHEEGMIIHLQALLG----NKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 66 kkg~WTeEEDelLleLVk~~G----~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
.+++||.+||.+|++++..|| .+|..||.+|||||..||++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999988764
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.7e-09 Score=81.18 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=44.2
Q ss_pred cCCCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhh
Q 018559 66 KRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLK 113 (354)
Q Consensus 66 kkg~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLk 113 (354)
..++||++|+.++++++..||.+|..||.+||+||..||..+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 357999999999999999999999999999999999999999976544
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.86 E-value=4.5e-10 Score=91.60 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=43.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCCceecccCCCccChhhhhhhhhccc
Q 018559 13 KKGPWTPEEDIILVSYIQEHG---PGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG---~~nW~~IA~~lg~~Rs~kQCR~RW~n~L 61 (354)
.+++||+|||++|..++..|+ +..|..||..|| +|+..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 378999999999999999997 457999999999 999999999999875
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.86 E-value=4.1e-09 Score=86.12 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=60.2
Q ss_pred hhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCCcHHHHHhhC-----CCCCHHHHHHHHHHhhhhHhhhcc
Q 018559 51 KSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYL-----PQRTDNDIKNYWNTHLKKKLKKFQ 120 (354)
Q Consensus 51 kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~kWskIAk~L-----pgRT~~QcKnRW~~lLkkklkK~~ 120 (354)
.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.++...
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5678899999975 89999999999999999999999999998 589999999999999998877663
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.75 E-value=1.1e-08 Score=79.59 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=45.3
Q ss_pred CCcCCCCChhhHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 64 GIKRGNFTPHEEGMIIHLQALLG----NKWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 64 ~ikkg~WTeEEDelLleLVk~~G----~kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
..+.+.||.|||++|.+++++|+ .+|..||.+| |||..+|+.||+.+++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 6799999998 99999999999988665
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.2e-08 Score=76.43 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=46.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhccc
Q 018559 8 DKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L 61 (354)
++..-..++||+||++++.+++..|| .+|..||..|+ +|+..||+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 44455679999999999999999999 69999999998 999999999997643
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.59 E-value=5.9e-08 Score=90.46 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=46.2
Q ss_pred cCCCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 66 KRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 66 kkg~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
..++||++|+.++++++.+||++|..||+.|++||..||+++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999988876
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.54 E-value=3.3e-08 Score=75.24 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=43.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCceec---ccCCCccChhhhhhhhhcccC
Q 018559 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVP---TNTGLLRCSKSCRLRWTNYLR 62 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~~nW~~IA---~~lg~~Rs~kQCR~RW~n~L~ 62 (354)
.+.+||+|||+.|++.|++||. +|..|+ ..+. +|+...+.+||++...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 6889999999999999999996 999999 4555 8999999999998764
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.47 E-value=1.1e-07 Score=96.98 Aligned_cols=47 Identities=15% Similarity=0.331 Sum_probs=43.3
Q ss_pred CCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 68 GNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 68 g~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
..||.+|-.++++++.+||..|..||..++.||..|||++|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999865543
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.45 E-value=2.7e-07 Score=72.29 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=43.8
Q ss_pred cCCCCChhhHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 66 KRGNFTPHEEGMIIHLQALLGN----KWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 66 kkg~WTeEEDelLleLVk~~G~----kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
....||.+|+++|..++..|+. +|..||.+|||||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999984 699999999999999999999988543
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.40 E-value=6.4e-08 Score=75.36 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=44.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhC---CCCCceecccCCCccChhhhhhhhhcccC
Q 018559 10 VGIKKGPWTPEEDIILVSYIQEHG---PGNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (354)
Q Consensus 10 p~lkKG~WT~EEDe~L~~lV~kyG---~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 62 (354)
...+.+.||.|||++|..++..|+ +..|..||..+| |+..+|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 345678999999999999999998 356999999974 999999999987654
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.29 E-value=7.9e-07 Score=66.63 Aligned_cols=47 Identities=28% Similarity=0.428 Sum_probs=42.8
Q ss_pred CCCCChhhHHHHHHHHHHh--------CCc-HHHHHh-hCCCCCHHHHHHHHHHhhh
Q 018559 67 RGNFTPHEEGMIIHLQALL--------GNK-WAAIAS-YLPQRTDNDIKNYWNTHLK 113 (354)
Q Consensus 67 kg~WTeEEDelLleLVk~~--------G~k-WskIAk-~LpgRT~~QcKnRW~~lLk 113 (354)
+.+||+|||..|++.|.++ |+. |..+++ .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 7999999999999998775
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.20 E-value=4.4e-07 Score=71.07 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCCceecccCCCccChhhhhhhhhcccC
Q 018559 14 KGPWTPEEDIILVSYIQEHGP---GNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~---~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 62 (354)
...||.+|+++|..++..|+. .+|..||..+| +|+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 468999999999999999975 46999999999 8999999999998764
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.13 E-value=6e-07 Score=67.29 Aligned_cols=48 Identities=21% Similarity=0.482 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCCceecc-cCCCccChhhhhhhhhcccC
Q 018559 14 KGPWTPEEDIILVSYIQEH--------GPGNWRSVPT-NTGLLRCSKSCRLRWTNYLR 62 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~ky--------G~~nW~~IA~-~lg~~Rs~kQCR~RW~n~L~ 62 (354)
+.+||+|||+.|+.+|..| |..-|+.+++ .++ .++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4345999999 687 9999999999999874
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.09 E-value=9.5e-07 Score=82.40 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=45.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccC
Q 018559 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 62 (354)
...++||.||++++++++..|| .+|..||..++ +|+..||+.+|+++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3577999999999999999999 69999999999 9999999999998764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=1.3e-05 Score=60.49 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=44.1
Q ss_pred CCCcCCCCChhhHHHHHHHHHHhCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 018559 63 PGIKRGNFTPHEEGMIIHLQALLGNKWAAIAS-YLPQRTDNDIKNYWNT 110 (354)
Q Consensus 63 P~ikkg~WTeEEDelLleLVk~~G~kWskIAk-~LpgRT~~QcKnRW~~ 110 (354)
|.+....||++|-.+..+++.+||..|..|++ .|++||..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 56778899999999999999999999999999 5999999999988864
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.90 E-value=2.3e-05 Score=63.75 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=44.5
Q ss_pred CCChhhHHHHHHHHHHhCC---cHHHHHhhCCCCCHHHHHHHHHHhhhhHh
Q 018559 69 NFTPHEEGMIIHLQALLGN---KWAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (354)
Q Consensus 69 ~WTeEEDelLleLVk~~G~---kWskIAk~LpgRT~~QcKnRW~~lLkkkl 116 (354)
-||.+||..||...++-|. .|..||+.|.+|+.+||++||+.+++-.-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 6999999999999999996 79999999999999999999999987553
No 73
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.86 E-value=3.2e-05 Score=63.12 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=53.3
Q ss_pred hhhhcccCCCCcCCCCChhhHHHHHHHHHHhCCcHHHHHhhCC-----CCCHHHHHHHHHHhhhhHhhhccC
Q 018559 55 LRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLP-----QRTDNDIKNYWNTHLKKKLKKFQS 121 (354)
Q Consensus 55 ~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~kWskIAk~Lp-----gRT~~QcKnRW~~lLkkklkK~~~ 121 (354)
+.|..+|. ...||.||...|++|++.|+-+|..|+..+. .||-.++|.||..+.++.++....
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~~ 89 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV 89 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 34566664 3689999999999999999999999998763 799999999999999998776543
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.84 E-value=6.1e-05 Score=72.89 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhh-------hhhcc---------------------------
Q 018559 15 GPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRL-------RWTNY--------------------------- 60 (354)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~-------RW~n~--------------------------- 60 (354)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 888866643 22110
Q ss_pred ---------------c-CCCCcCCCCChhhHHHHHHHHHHhCC----cHHHHH---h---------hCCCCCHHHHHHHH
Q 018559 61 ---------------L-RPGIKRGNFTPHEEGMIIHLQALLGN----KWAAIA---S---------YLPQRTDNDIKNYW 108 (354)
Q Consensus 61 ---------------L-~P~ikkg~WTeEEDelLleLVk~~G~----kWskIA---k---------~LpgRT~~QcKnRW 108 (354)
+ .+..+...||++||..|+-++.+||- .|..|. + ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 01223458999999999999999995 599996 2 45679999999999
Q ss_pred HHhhhhHhh
Q 018559 109 NTHLKKKLK 117 (354)
Q Consensus 109 ~~lLkkklk 117 (354)
..+++-..+
T Consensus 270 ~tLi~~iek 278 (304)
T 1ofc_X 270 NTLITLIER 278 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999976543
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.80 E-value=3.2e-06 Score=66.28 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=38.6
Q ss_pred CCCCChhhHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHH
Q 018559 67 RGNFTPHEEGMIIHLQALLGN----KWAAIASYLPQRTDNDIKNYWN 109 (354)
Q Consensus 67 kg~WTeEEDelLleLVk~~G~----kWskIAk~LpgRT~~QcKnRW~ 109 (354)
.+.||.+|+++|..+++.|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 7999999999999999999884
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.94 E-value=3.9e-06 Score=64.96 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=42.0
Q ss_pred CCChhhHHHHHHHHHHhCC---cHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 69 NFTPHEEGMIIHLQALLGN---KWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 69 ~WTeEEDelLleLVk~~G~---kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
-||.|||..|+..+++-|. .|+.||..| +|+++||++||..+++=
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 799999999 99999999999988763
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.70 E-value=9.4e-06 Score=63.67 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CCceecccCCCccChhhhhhhhh
Q 018559 14 KGPWTPEEDIILVSYIQEHGPG---NWRSVPTNTGLLRCSKSCRLRWT 58 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~---nW~~IA~~lg~~Rs~kQCR~RW~ 58 (354)
...||.+|+++|..++..|+.. .|.+||..|| +|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5689999999999999999753 7999999999 999999999985
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=4.3e-05 Score=57.60 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=44.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecc-cCCCccChhhhhhhhhc
Q 018559 8 DKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPT-NTGLLRCSKSCRLRWTN 59 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~-~lg~~Rs~kQCR~RW~n 59 (354)
-.|.+....||+||-.+..+++..|| .+|..|+. .++ +|+..+|...|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 35777889999999999999999999 59999998 588 9999999988764
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.51 E-value=0.00014 Score=58.93 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=41.7
Q ss_pred CCCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHh
Q 018559 67 RGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTH 111 (354)
Q Consensus 67 kg~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~l 111 (354)
...||++|..+..+++..||.+|..||..||+||..+|-..|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999988644
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.51 E-value=0.00019 Score=55.16 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=40.5
Q ss_pred CCCCChhhHHHHHHHHHHhCCcHHHHHh-hCCCCCHHHHHHHHH
Q 018559 67 RGNFTPHEEGMIIHLQALLGNKWAAIAS-YLPQRTDNDIKNYWN 109 (354)
Q Consensus 67 kg~WTeEEDelLleLVk~~G~kWskIAk-~LpgRT~~QcKnRW~ 109 (354)
...||++|-.+..+++.+||..|..|++ .||+||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 699999999999887
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.23 E-value=0.00012 Score=74.69 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=43.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhccc
Q 018559 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L 61 (354)
....+||.||.+++++++.+|| .+|..||..++ +|+..||+..|+++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3468999999999999999999 59999999999 999999999998754
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.15 E-value=0.00034 Score=54.96 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=41.5
Q ss_pred cCCCCChhhHHHHHHHHHHhC----------CcHHHHHhhCC----CCCHHHHHHHHHHhhhhH
Q 018559 66 KRGNFTPHEEGMIIHLQALLG----------NKWAAIASYLP----QRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 66 kkg~WTeEEDelLleLVk~~G----------~kWskIAk~Lp----gRT~~QcKnRW~~lLkkk 115 (354)
....||.+|-..||+++..+. ..|..||..|. .||+.||+.+|.++.+.-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999987632 14999999873 699999999999888764
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.02 E-value=0.00026 Score=57.71 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=43.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCC----CccChhhhhhhhhccc
Q 018559 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG----LLRCSKSCRLRWTNYL 61 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg----~~Rs~kQCR~RW~n~L 61 (354)
+...+||.||++.|++++++|+ ..|..|+..+. .+|+..+.+.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999 59999999883 2799999999998764
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.93 E-value=0.00038 Score=56.43 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=40.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhc
Q 018559 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTN 59 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n 59 (354)
...||+||.+++.+++..|| .+|..|+..++ +|+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence 46899999999999999999 59999999998 9999999998754
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.86 E-value=0.00051 Score=52.78 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=40.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCceecc-cCCCccChhhhhhhhhc
Q 018559 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPT-NTGLLRCSKSCRLRWTN 59 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~~nW~~IA~-~lg~~Rs~kQCR~RW~n 59 (354)
....||+||-.+..+++..|| .+|..|+. .++ +|+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 356899999999999999999 59999999 488 9999999988764
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.80 E-value=0.00013 Score=57.50 Aligned_cols=49 Identities=20% Similarity=0.547 Sum_probs=39.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCCceecccC---CCccChhhhhhhhhccc
Q 018559 13 KKGPWTPEEDIILVSYIQEHGP---------GNWRSVPTNT---GLLRCSKSCRLRWTNYL 61 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~---------~nW~~IA~~l---g~~Rs~kQCR~RW~n~L 61 (354)
+...||.+|...|+.+...... .-|..||..| |..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999876321 1599999875 46799999999998754
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.27 E-value=0.017 Score=57.32 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhh-------hhhcc---------------------------
Q 018559 15 GPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRL-------RWTNY--------------------------- 60 (354)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~-------RW~n~--------------------------- 60 (354)
+.||.-+=..++.++.+||..+-..||..|+.+++...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998889999999853577655542 11111
Q ss_pred -------------c--C-CCC--cCCCCChhhHHHHHHHHHHhCC----cHHHHHhh------------CCCCCHHHHHH
Q 018559 61 -------------L--R-PGI--KRGNFTPHEEGMIIHLQALLGN----KWAAIASY------------LPQRTDNDIKN 106 (354)
Q Consensus 61 -------------L--~-P~i--kkg~WTeEEDelLleLVk~~G~----kWskIAk~------------LpgRT~~QcKn 106 (354)
| . +.. +...||++||..||-++.+||- .|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 0 000 2457999999999999999994 59999432 35799999999
Q ss_pred HHHHhhhhHhhhcc
Q 018559 107 YWNTHLKKKLKKFQ 120 (354)
Q Consensus 107 RW~~lLkkklkK~~ 120 (354)
|...+++-..+...
T Consensus 284 Rc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 284 RGNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999987655543
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.27 E-value=0.01 Score=53.06 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=36.9
Q ss_pred CCChhhHHHHHHHHHHhC-CcHHHHHh--hC------------CCCCHHHHHHHHHHhhhh
Q 018559 69 NFTPHEEGMIIHLQALLG-NKWAAIAS--YL------------PQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 69 ~WTeEEDelLleLVk~~G-~kWskIAk--~L------------pgRT~~QcKnRW~~lLkk 114 (354)
.||.+||..|+..+.+|| ++|..|.. .| ..++..++..|-..+|+-
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 599999999999999999 88999954 21 125677899998777764
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.86 E-value=0.0014 Score=50.79 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=40.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCCceecccCCCccChhhhhhhhhcccC
Q 018559 14 KGPWTPEEDIILVSYIQEHGP--GNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~--~nW~~IA~~lg~~Rs~kQCR~RW~n~L~ 62 (354)
--.||.|||..|+...++.|+ ..|..||..+ +|++.|+.+||+..+.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 357999999999999999986 3699999887 5999999999988653
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.85 E-value=0.0037 Score=50.93 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=41.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCCceecccCCCccChhhhhhhhhccc
Q 018559 13 KKGPWTPEEDIILVSYIQEHGP--GNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~--~nW~~IA~~lg~~Rs~kQCR~RW~n~L 61 (354)
+--.||.|||..|+...++.|. ..|..||+.++ +|++.|+.+||+.++
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 3446999999999999999985 37999999998 999999999998643
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.84 E-value=0.042 Score=49.02 Aligned_cols=38 Identities=32% Similarity=0.528 Sum_probs=32.0
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecc
Q 018559 5 PCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPT 42 (354)
Q Consensus 5 pcc~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~ 42 (354)
|++.++.-....||.+||..|+..|.+||.++|..|..
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 45555655667899999999999999999999998865
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.36 E-value=0.039 Score=44.92 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=41.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCC----CccChhhhhhhhhccc
Q 018559 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG----LLRCSKSCRLRWTNYL 61 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg----~~Rs~kQCR~RW~n~L 61 (354)
++...||.||...|.+++++|. -.|..|+.... ..|+..+..+||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 59999987763 2699999999998764
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.69 E-value=0.3 Score=37.11 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=41.2
Q ss_pred CcCCCCChhhHHHHHHHHHHhCCc---HHHHHhhC--CCCCHHHHHHHHHHhhh
Q 018559 65 IKRGNFTPHEEGMIIHLQALLGNK---WAAIASYL--PQRTDNDIKNYWNTHLK 113 (354)
Q Consensus 65 ikkg~WTeEEDelLleLVk~~G~k---WskIAk~L--pgRT~~QcKnRW~~lLk 113 (354)
..+-.||+|.....+++|..+|.. +..|.+.| +|.|..+|+.+.+.+..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 346689999999999999999954 78998876 78999999998876543
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.02 E-value=0.35 Score=46.71 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=41.8
Q ss_pred CCCCChhhHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 67 RGNFTPHEEGMIIHLQALLGN-KWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 67 kg~WTeEEDelLleLVk~~G~-kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
-+.||..+...++.++.+||. .|..||..|+|+|...|+.++......
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 357999999999999999995 699999999999999998877655543
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.16 E-value=0.61 Score=44.30 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecc
Q 018559 15 GPWTPEEDIILVSYIQEHGPGNWRSVPT 42 (354)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~nW~~IA~ 42 (354)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 5699999999999999999999999964
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=83.19 E-value=0.74 Score=34.94 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=36.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCC---CceecccCCC-ccChhhhhhhhhcc
Q 018559 12 IKKGPWTPEEDIILVSYIQEHGPGN---WRSVPTNTGL-LRCSKSCRLRWTNY 60 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~n---W~~IA~~lg~-~Rs~kQCR~RW~n~ 60 (354)
..+-.||+|..++++.+|...|. + ++.|.+.|+. +.+..++.-+.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999994 4 5677777653 56777777665544
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=70.68 E-value=9 Score=36.27 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=41.4
Q ss_pred CCCCChhhHHHHHHHHHHhC---CcHHHHHh--hCCCCCHHHHHHHHHHhhhh
Q 018559 67 RGNFTPHEEGMIIHLQALLG---NKWAAIAS--YLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 67 kg~WTeEEDelLleLVk~~G---~kWskIAk--~LpgRT~~QcKnRW~~lLkk 114 (354)
+++||..|-..|++.+.+|| .+|..|+. .|+.|+...++.-|..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 67899999999999999999 58999975 47899999999888766643
No 98
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=66.59 E-value=35 Score=26.87 Aligned_cols=87 Identities=14% Similarity=0.057 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccC-C-----CCcCCCCChhhHHHHHHHHHHhC-Cc
Q 018559 16 PWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR-P-----GIKRGNFTPHEEGMIIHLQALLG-NK 88 (354)
Q Consensus 16 ~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~-P-----~ikkg~WTeEEDelLleLVk~~G-~k 88 (354)
..|.++-..++.++. .| ..-..||..++ .+...++ ||..... . .......+++++..|+.+ ...+ -.
T Consensus 6 ~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s 79 (141)
T 1u78_A 6 ALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKT 79 (141)
T ss_dssp CCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCC
T ss_pred cCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCC
Confidence 678888888887763 45 36688999887 4444443 3332211 1 112235788888888877 3333 34
Q ss_pred HHHHHhhCCC-CCHHHHHHHH
Q 018559 89 WAAIASYLPQ-RTDNDIKNYW 108 (354)
Q Consensus 89 WskIAk~Lpg-RT~~QcKnRW 108 (354)
=.+|+..|.- -+...|....
T Consensus 80 ~~~i~~~lg~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNELQLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHTTCCSCHHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHH
Confidence 5788888822 5666665543
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=56.21 E-value=15 Score=25.75 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 73 HEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 73 EEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
+.+..++.++-..|..+.+||..+ |-+...|+.+....+++-
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 445556666667788999999999 889999998877666554
No 100
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=55.71 E-value=25 Score=29.02 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=30.6
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCCCC----HHHHHHHHHHhhhhHhhh
Q 018559 77 MIIHLQALLG--------NKWAAIASYLPQRT----DNDIKNYWNTHLKKKLKK 118 (354)
Q Consensus 77 lLleLVk~~G--------~kWskIAk~LpgRT----~~QcKnRW~~lLkkklkK 118 (354)
.|..+|..+| +.|.+||..|.--+ ..++|..|..+|-+-=..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4667777777 36999999983322 468899999999875443
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=55.00 E-value=19 Score=29.44 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=29.3
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCCCC----HHHHHHHHHHhhhhH
Q 018559 77 MIIHLQALLG--------NKWAAIASYLPQRT----DNDIKNYWNTHLKKK 115 (354)
Q Consensus 77 lLleLVk~~G--------~kWskIAk~LpgRT----~~QcKnRW~~lLkkk 115 (354)
+|..+|..+| +.|..|+..|.--. ..++|..|..+|-+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4677778887 36999999983322 567999999988763
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=54.92 E-value=22 Score=28.31 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCCCC----HHHHHHHHHHhhhhH
Q 018559 77 MIIHLQALLG--------NKWAAIASYLPQRT----DNDIKNYWNTHLKKK 115 (354)
Q Consensus 77 lLleLVk~~G--------~kWskIAk~LpgRT----~~QcKnRW~~lLkkk 115 (354)
.|..+|..+| +.|..||..|.--. ..++|..|..+|-+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4666677777 46999999993322 468899999888763
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=54.57 E-value=10 Score=31.05 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 77 MIIHLQALLG--------NKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 77 lLleLVk~~G--------~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
.|..+|..+| +.|..||..|.--....+|..|..+|-+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 4777777777 36999999984444789999999888763
No 104
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=50.19 E-value=21 Score=25.81 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHH----hCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 73 HEEGMIIHLQAL----LGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 73 EEDelLleLVk~----~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
+.+..++.+.-. .|..+.+||..| |-+...|+.+....+++-
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344455555544 577899999999 899999999877766554
No 105
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.05 E-value=26 Score=28.92 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=28.9
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCCC--C--HHHHHHHHHHhhhhH
Q 018559 77 MIIHLQALLG--------NKWAAIASYLPQR--T--DNDIKNYWNTHLKKK 115 (354)
Q Consensus 77 lLleLVk~~G--------~kWskIAk~LpgR--T--~~QcKnRW~~lLkkk 115 (354)
+|..+|.++| +.|..|+..|.-- + ...+|..|..+|-+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4666777777 3699999998332 1 458899999998874
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=43.92 E-value=14 Score=30.72 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHHhC--------CcHHHHHhhCCCCCHHHHHHHHHHhhhhHhh
Q 018559 78 IIHLQALLG--------NKWAAIASYLPQRTDNDIKNYWNTHLKKKLK 117 (354)
Q Consensus 78 LleLVk~~G--------~kWskIAk~LpgRT~~QcKnRW~~lLkkklk 117 (354)
|..+|.+.| +.|..|+..|.--....+|..|..+|-+-=.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 555555555 2599999988444489999999999988543
No 107
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.22 E-value=24 Score=25.15 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=30.2
Q ss_pred hHHHHHHHHH----HhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 74 EEGMIIHLQA----LLGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 74 EDelLleLVk----~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
.+..++.+.- ..|..+.+||..| |-+...|+.+....+++-
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444444444 2477899999999 899999999888776654
No 108
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=43.02 E-value=40 Score=33.38 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=38.9
Q ss_pred CCCCChhhHHHHHHHHHHhCCc-HHHHHhhCC-CCCHHHHHHHHHHhh
Q 018559 67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112 (354)
Q Consensus 67 kg~WTeEEDelLleLVk~~G~k-WskIAk~Lp-gRT~~QcKnRW~~lL 112 (354)
-+.||.-+=..++.+..+||.. -..||..|. |+|...|+.+.....
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 3579999999999999999965 999999997 999999996554444
No 109
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=41.38 E-value=18 Score=28.26 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=27.0
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCC---C-CHHHHHHHHHHhhhh
Q 018559 77 MIIHLQALLG--------NKWAAIASYLPQ---R-TDNDIKNYWNTHLKK 114 (354)
Q Consensus 77 lLleLVk~~G--------~kWskIAk~Lpg---R-T~~QcKnRW~~lLkk 114 (354)
.|..+|...| +.|.+|+..|.- - ...++|..|..+|-+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3666677766 469999998832 1 256889989887765
No 110
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=40.24 E-value=8.5 Score=32.17 Aligned_cols=45 Identities=11% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCceecccCCCccC----hhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHH
Q 018559 36 NWRSVPTNTGLLRC----SKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQA 83 (354)
Q Consensus 36 nW~~IA~~lg~~Rs----~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk 83 (354)
.|..||..|+...+ +...+..|.++|.|- -..+++|-..|..-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 69999999975443 246688899988652 2377888888876553
No 111
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=40.18 E-value=47 Score=27.41 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHHHHHhC--------CcHHHHHhhCC--CC---CHHHHHHHHHHhhhhH
Q 018559 76 GMIIHLQALLG--------NKWAAIASYLP--QR---TDNDIKNYWNTHLKKK 115 (354)
Q Consensus 76 elLleLVk~~G--------~kWskIAk~Lp--gR---T~~QcKnRW~~lLkkk 115 (354)
-.|..+|..+| +.|..|+..|. .. ....+|..|..+|-+-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45777788887 36999999983 22 2578999999998774
No 112
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=38.30 E-value=38 Score=25.53 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 73 HEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 73 EEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
+.+..++.++...|-.-.+||..| |-+...|+.+....+++-
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344555666666788899999999 899999998887665543
No 113
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=38.16 E-value=43 Score=28.39 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCC--CC---CHHHHHHHHHHhhhhH
Q 018559 77 MIIHLQALLG--------NKWAAIASYLP--QR---TDNDIKNYWNTHLKKK 115 (354)
Q Consensus 77 lLleLVk~~G--------~kWskIAk~Lp--gR---T~~QcKnRW~~lLkkk 115 (354)
.|..+|..+| +.|..|+..|. .. ....+|..|..+|-+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4667777777 36999999983 22 2568999999988774
No 114
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=36.58 E-value=45 Score=27.73 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=47.8
Q ss_pred cCCCCHHHH--HHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhC-----
Q 018559 14 KGPWTPEED--IILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLG----- 86 (354)
Q Consensus 14 KG~WT~EED--e~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G----- 86 (354)
+.+|.+.+. +.|....+..|. ....++. ++ +|. |+ =-+|..+|.++|
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~-gk~-----------lD------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IG-GCE-----------LD------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ET-TEE-----------CC------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CC-CEe-----------cc------------HHHHHHHHHHcCcHHHh
Confidence 557887775 456677777774 4444443 22 221 11 124667777877
Q ss_pred ---CcHHHHHhhC--CCC---CHHHHHHHHHHhhhhH
Q 018559 87 ---NKWAAIASYL--PQR---TDNDIKNYWNTHLKKK 115 (354)
Q Consensus 87 ---~kWskIAk~L--pgR---T~~QcKnRW~~lLkkk 115 (354)
+.|..||..| |.- ....+|..|..+|-+-
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 4699999998 322 2467899998888663
No 115
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=36.16 E-value=7.2 Score=31.96 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCccChhhhhhhhhcccCC
Q 018559 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63 (354)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P 63 (354)
+|..+|.+.|. +.|..||..|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777777763 36999999998444 77888888888764
No 116
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=33.15 E-value=27 Score=27.91 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCC--C---CHHHHHHHHHHhhhhH
Q 018559 77 MIIHLQALLG--------NKWAAIASYLPQ--R---TDNDIKNYWNTHLKKK 115 (354)
Q Consensus 77 lLleLVk~~G--------~kWskIAk~Lpg--R---T~~QcKnRW~~lLkkk 115 (354)
.|..+|..+| +.|..||..|.- . ...++|..|..+|-+-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4666677777 469999998832 1 2467999999988764
No 117
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=32.87 E-value=73 Score=22.71 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=30.8
Q ss_pred CChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 70 FTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 70 WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
+|+.|-+. +.++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQV-LSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHH-HHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44555444 4454 6678899999999 88999999887766654
No 118
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=32.84 E-value=11 Score=30.89 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCccC---hhhhhhhhhcccCC
Q 018559 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRC---SKSCRLRWTNYLRP 63 (354)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IA~~lg~~Rs---~kQCR~RW~n~L~P 63 (354)
+|..+|.+.|. +.|..|+..|+...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778887763 369999999985432 45667778887754
No 119
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=31.93 E-value=11 Score=31.29 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCccC----hhhhhhhhhcccCC
Q 018559 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRC----SKSCRLRWTNYLRP 63 (354)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IA~~lg~~Rs----~kQCR~RW~n~L~P 63 (354)
+|..+|.+.|. +.|..|+..|+...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777763 379999999985443 45667788888764
No 120
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.28 E-value=72 Score=26.24 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=24.6
Q ss_pred hCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 85 LGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 85 ~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
.|-...+||..| |-+...|+.+....+++-
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 467799999999 889999999887766553
No 121
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=29.73 E-value=65 Score=24.07 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=30.0
Q ss_pred hHHHHHHHHHH----hCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 74 EEGMIIHLQAL----LGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 74 EDelLleLVk~----~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
.+..++.+.-. .|-.+.+||..| |-+...|+.+....+++-
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34445555444 467899999999 899999998877666554
No 122
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=29.48 E-value=65 Score=26.88 Aligned_cols=48 Identities=6% Similarity=-0.078 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHhhhhHhhhccC
Q 018559 73 HEEGMIIHLQALLG-NKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQS 121 (354)
Q Consensus 73 EEDelLleLVk~~G-~kWskIAk~LpgRT~~QcKnRW~~lLkkklkK~~~ 121 (354)
+-|..|+.+.++.| -.|.+||+.+ |=+...|+.|++.+....+-++-.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeeece
Confidence 45778888877766 4599999999 999999999999999888755433
No 123
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.27 E-value=83 Score=23.97 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 69 NFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 69 ~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
..|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666655554 5 7788899999999 889999998877766554
No 124
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=27.81 E-value=13 Score=27.14 Aligned_cols=11 Identities=73% Similarity=1.688 Sum_probs=6.9
Q ss_pred CCCCCCCCCcc
Q 018559 238 SGGGGGGGDLI 248 (354)
Q Consensus 238 ~~~~~~~~~~~ 248 (354)
+|||+|||+|.
T Consensus 28 ggggggggelm 38 (62)
T 2i7u_A 28 GGGGGGGGELM 38 (62)
T ss_dssp CSSCSSSCHHH
T ss_pred cCCCCchHHHH
Confidence 35666677765
No 125
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=27.79 E-value=21 Score=29.49 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=27.6
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCccC---hhhhhhhhhcccCC
Q 018559 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRC---SKSCRLRWTNYLRP 63 (354)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IA~~lg~~Rs---~kQCR~RW~n~L~P 63 (354)
+|..+|.+.|. +.|..|+..|+...+ +.+.+..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777763 379999999885543 35667777777743
No 126
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.55 E-value=1.1e+02 Score=23.30 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=35.7
Q ss_pred CCCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 67 RGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 67 kg~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
....|+.|-+.|.-++ .|..-.+||..| +-+...|+.+...++++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4467888777665544 788899999999 899999999888876653
No 127
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=27.23 E-value=38 Score=30.08 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=18.1
Q ss_pred CCccCCCCHHHHHHHHH--------HHHHhC
Q 018559 11 GIKKGPWTPEEDIILVS--------YIQEHG 33 (354)
Q Consensus 11 ~lkKG~WT~EEDe~L~~--------lV~kyG 33 (354)
.-..|-||+|+|+.|.. ++++||
T Consensus 111 ~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 111 PNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp TTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 34689999999998864 677776
No 128
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=26.09 E-value=1e+02 Score=24.57 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=27.9
Q ss_pred ChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 018559 71 TPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKN 106 (354)
Q Consensus 71 TeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKn 106 (354)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667788888899999999999999 666665543
No 129
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=25.92 E-value=87 Score=21.83 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=33.9
Q ss_pred CCCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 68 GNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 68 g~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
..+|+.|-+.|.. + ..|..-.+||..+ |-+...|+.+...++++-
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3577777666554 4 5677899999999 889999998887766543
No 130
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.62 E-value=2.8e+02 Score=22.44 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=47.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcc------cCCCCc----CCCCChhhHHHHHHHHH
Q 018559 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY------LRPGIK----RGNFTPHEEGMIIHLQA 83 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~------L~P~ik----kg~WTeEEDelLleLVk 83 (354)
..+.|.++-..++.++. .| .....||..++ .+...+ .||.+. +.+... ....+.++...|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34789998888888884 55 46788999887 333333 334432 222111 23478888888888876
Q ss_pred HhC-CcHHHHHhhC
Q 018559 84 LLG-NKWAAIASYL 96 (354)
Q Consensus 84 ~~G-~kWskIAk~L 96 (354)
... -.-..|+..|
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 643 2234555444
No 131
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.25 E-value=99 Score=22.86 Aligned_cols=43 Identities=28% Similarity=0.267 Sum_probs=32.7
Q ss_pred CCChhhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 69 NFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 69 ~WTeEEDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
..|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655544 4 5788899999999 88999999887766655
No 132
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.02 E-value=1.4e+02 Score=20.01 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 75 EGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 75 DelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
+..++.+ -..|..-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3445555 36687889999999 88999999888776655
No 133
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.57 E-value=1.2e+02 Score=24.13 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 74 EEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 74 EDelLleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
.+..++.++...|-...+||..| |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34455666666788899999999 88999998887765544
No 134
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=22.83 E-value=1.1e+02 Score=25.81 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=26.5
Q ss_pred HHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhh
Q 018559 78 IIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKK 114 (354)
Q Consensus 78 LleLVk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkk 114 (354)
++.+.-..|-...+||..| |-+...|+.+....+++
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3333334477899999999 88999998888766554
No 135
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.35 E-value=96 Score=24.38 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=24.0
Q ss_pred hCCcHHHHHhhCCCCCHHHHHHHHHHhhhhH
Q 018559 85 LGNKWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (354)
Q Consensus 85 ~G~kWskIAk~LpgRT~~QcKnRW~~lLkkk 115 (354)
.|-...+||..| |-+...|+.+....+++-
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 466789999999 889999998887665543
No 136
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=22.12 E-value=19 Score=29.76 Aligned_cols=25 Identities=40% Similarity=0.723 Sum_probs=0.0
Q ss_pred CccccCCCCCCCCCCCCccchhhhh
Q 018559 230 KEEQEGGGSGGGGGGGDLISNEEFI 254 (354)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (354)
++..|.|++.||+.||.--||-.|+
T Consensus 118 ~~~~e~g~~~~~~~~~~~~~~~~~~ 142 (143)
T 3u6r_L 118 HPQFEKGGGSGGGSGGGSWSHPQFE 142 (143)
T ss_dssp -------------------------
T ss_pred CCceeccCCcCCCCCCCcccCcccc
Confidence 3445555555555566667787776
No 137
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=21.87 E-value=1.3e+02 Score=21.16 Aligned_cols=33 Identities=9% Similarity=-0.071 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 018559 73 HEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKN 106 (354)
Q Consensus 73 EEDelLleLVk~~G~kWskIAk~LpgRT~~QcKn 106 (354)
-|...|.++...+|++..+.|+.| |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477888999999999999999998 556555544
No 138
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.79 E-value=42 Score=28.49 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCccC----hhhhhhhhhcccCC
Q 018559 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRC----SKSCRLRWTNYLRP 63 (354)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IA~~lg~~Rs----~kQCR~RW~n~L~P 63 (354)
+|..+|.+.|. +.|..|+..|+...+ +.+++..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46667777663 369999999885432 45678888888876
No 139
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.78 E-value=1.5e+02 Score=23.96 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHhhhhHhhhc
Q 018559 73 HEEGMIIHLQALLG-NKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKF 119 (354)
Q Consensus 73 EEDelLleLVk~~G-~kWskIAk~LpgRT~~QcKnRW~~lLkkklkK~ 119 (354)
+-|..|+.+....| -.+.+||+.+ |=+...|..|.+.+.+..+-++
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 44567777777766 4699999999 7899999999999988876543
No 140
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.20 E-value=71 Score=28.33 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=23.0
Q ss_pred hhhhhhhcccC-CCCcCCCCChhhHHHHH--------HHHHHhC
Q 018559 52 SCRLRWTNYLR-PGIKRGNFTPHEEGMII--------HLQALLG 86 (354)
Q Consensus 52 QCR~RW~n~L~-P~ikkg~WTeEEDelLl--------eLVk~~G 86 (354)
.+-+.|..-.. |.-..|-||.++|+.|. +|+++||
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 34444444333 45678999999999886 4556665
Done!