Query 018560
Match_columns 354
No_of_seqs 125 out of 521
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2952 Cell cycle control pro 100.0 5E-113 1E-117 818.6 26.2 330 17-350 8-351 (351)
2 COG5035 CDC50 Cell cycle contr 100.0 3.1E-99 7E-104 709.7 22.8 322 24-350 15-372 (372)
3 PF03381 CDC50: LEM3 (ligand-e 100.0 2.4E-84 5.2E-89 620.8 22.6 262 72-343 1-278 (278)
4 PF01102 Glycophorin_A: Glycop 86.3 0.66 1.4E-05 39.7 2.9 26 311-336 65-90 (122)
5 COG1470 Predicted membrane pro 61.4 33 0.00072 35.8 7.7 44 267-315 453-496 (513)
6 PF11797 DUF3324: Protein of u 54.7 10 0.00022 32.8 2.5 48 251-299 84-131 (140)
7 PF05915 DUF872: Eukaryotic pr 51.5 40 0.00086 28.5 5.5 22 54-75 46-67 (115)
8 PF10204 DuoxA: Dual oxidase m 45.8 17 0.00037 35.4 2.7 32 306-340 240-271 (281)
9 PF01102 Glycophorin_A: Glycop 45.4 33 0.00071 29.4 4.1 30 308-337 65-94 (122)
10 PF13120 DUF3974: Domain of un 43.7 25 0.00054 29.0 2.9 38 309-351 3-40 (126)
11 PF12669 P12: Virus attachment 41.6 20 0.00042 26.6 1.9 26 315-340 2-27 (58)
12 PF12273 RCR: Chitin synthesis 40.2 19 0.0004 30.7 1.8 23 52-74 1-23 (130)
13 PF06365 CD34_antigen: CD34/Po 39.0 34 0.00073 31.8 3.4 25 312-336 103-127 (202)
14 PF12158 DUF3592: Protein of u 38.0 50 0.0011 27.7 4.2 24 51-74 121-147 (148)
15 PF04835 Pox_A9: A9 protein co 32.7 76 0.0016 23.3 3.7 27 54-80 25-51 (54)
16 PF05915 DUF872: Eukaryotic pr 31.8 40 0.00087 28.5 2.5 27 306-332 42-68 (115)
17 PF10177 DUF2371: Uncharacteri 31.7 62 0.0013 28.4 3.7 25 52-76 36-60 (141)
18 PF05399 EVI2A: Ectropic viral 31.0 50 0.0011 31.0 3.1 20 310-329 130-149 (227)
19 PF15048 OSTbeta: Organic solu 31.0 66 0.0014 27.7 3.6 25 312-336 37-61 (125)
20 PF14991 MLANA: Protein melan- 30.2 13 0.00028 31.5 -0.7 41 288-340 12-52 (118)
21 PF12606 RELT: Tumour necrosis 30.1 56 0.0012 23.6 2.6 24 313-336 3-26 (50)
22 PF09788 Tmemb_55A: Transmembr 28.7 59 0.0013 31.3 3.3 22 55-76 198-219 (256)
23 PF08507 COPI_assoc: COPI asso 28.1 91 0.002 26.6 4.1 28 311-338 85-112 (136)
24 PF05393 Hum_adeno_E3A: Human 27.0 93 0.002 25.2 3.6 31 303-333 26-56 (94)
25 PRK02935 hypothetical protein; 26.5 85 0.0018 26.3 3.4 66 50-124 35-105 (110)
26 PF09788 Tmemb_55A: Transmembr 25.7 52 0.0011 31.6 2.4 38 309-347 196-233 (256)
27 PF01299 Lamp: Lysosome-associ 25.4 52 0.0011 32.1 2.4 26 313-338 273-298 (306)
28 PF02009 Rifin_STEVOR: Rifin/s 25.2 72 0.0016 31.4 3.3 31 309-339 257-287 (299)
29 PF02038 ATP1G1_PLM_MAT8: ATP1 23.4 53 0.0011 23.8 1.5 24 310-333 14-37 (50)
30 PF13038 DUF3899: Domain of un 23.1 84 0.0018 24.8 2.8 23 57-79 4-26 (92)
31 PF11014 DUF2852: Protein of u 22.6 1.3E+02 0.0027 25.6 3.8 24 50-74 8-31 (115)
32 PF11023 DUF2614: Protein of u 22.5 1.1E+02 0.0024 25.9 3.5 65 51-124 35-104 (114)
33 PF09925 DUF2157: Predicted me 22.0 86 0.0019 27.0 2.9 25 53-77 31-55 (145)
34 PF06781 UPF0233: Uncharacteri 21.6 2.4E+02 0.0052 22.7 5.1 12 48-59 27-38 (87)
35 PF10164 DUF2367: Uncharacteri 21.3 80 0.0017 26.0 2.3 18 59-76 69-86 (98)
36 KOG2833 Mevalonate pyrophospha 21.3 2.8E+02 0.006 28.0 6.4 40 243-287 73-117 (395)
37 PF10183 ESSS: ESSS subunit of 21.1 3.1E+02 0.0066 22.6 5.9 21 55-75 61-81 (105)
38 PF07234 DUF1426: Protein of u 20.9 1.2E+02 0.0025 25.2 3.2 27 308-334 16-42 (117)
39 COG5102 SFT2 Membrane protein 20.7 91 0.002 28.4 2.8 53 284-340 44-100 (201)
No 1
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-113 Score=818.64 Aligned_cols=330 Identities=55% Similarity=0.978 Sum_probs=301.8
Q ss_pred CCCCCCCCCCcCCCCCCCCcccccccCCcccccchhHHHHHHHHHHHHHHHHHHHhhhhcCCeEEEEEeCCCCCCCCCcc
Q 018560 17 AGSPDPPAPRRSSKRPKYSKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANR 96 (354)
Q Consensus 17 ~~~~~~~~~~~~s~~p~~~~f~QQ~L~aw~p~ltp~~vi~~f~~igi~fi~iGi~l~~~s~~v~E~~i~Yd~~c~~~~~~ 96 (354)
.+.+|-+...+++|||++++|+|||||||||+|||++|+++||++|++|++||++++++|++|.|++++|+ +|.+.+.+
T Consensus 8 ~~~~~~~~~~~~s~rP~~t~f~QQrLpA~qPilt~~~vlp~f~i~g~vFipiGv~l~~as~~v~Ei~i~YT-dc~~~~~~ 86 (351)
T KOG2952|consen 8 DVIPDLKGNRKKSRRPKNTAFKQQRLPAWQPILTPRTVLPLFFIIGVVFLPIGVGLLFASSKVIEITIRYT-DCIPTGFR 86 (351)
T ss_pred cccccccchhhhccCCccccchhccccccccccCcchHHHHHHHHHHHHHhhhhheeEeecceEEEEEecc-cCcccccc
Confidence 34566777788899999999999999999999999999999999999999999999999999999999995 78876655
Q ss_pred CcceeeeecCC--CceeEEEEEecCCCCCceEEEEEecchhhhhhhhhhCCChhhhcCcCCC-CCCCCCCCcccCCCCCe
Q 018560 97 TDKVAFIQSNA--SKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKT-SETSQCEPEDTTPDGKP 173 (354)
Q Consensus 97 ~~~~~~~~~~~--~~~C~i~f~i~~~m~~pVyvYY~L~NFyQNHRrYv~S~s~~QL~G~~~~-~~~~~C~P~~~~~~g~~ 173 (354)
+.+.++++... .+.|+++|+||++|++|||+||+|+|||||||||++|||++||+|+... .+.++|.|++++.+|++
T Consensus 87 ~~~~~~~~~~~~~~~~C~~~f~vp~~~k~pVy~YY~L~nfyQNhRRYvkSr~d~QL~G~~~~~~~~~~C~Pl~~~~~~kp 166 (351)
T KOG2952|consen 87 TNPSEYIQGHFDQTKSCTITFTVPKDMKGPVYLYYELTNFYQNHRRYVKSRDDKQLRGEPSKELNVKSCAPLEYNEGGKP 166 (351)
T ss_pred ccchhhhhcccCcccceEEEEEccccCCCCEEEEEehhHHHHHHHHHHhcccHHHhcCCCccccCccCCCcceecCCCce
Confidence 55555555332 4679999999999999999999999999999999999999999999753 34566999999767799
Q ss_pred eecchhhhcccccceeecccCCc---ceeeeccccccCCccccccCCCCC-------CCCCCCCcccCCcccCCCCCCCC
Q 018560 174 IVPCGLIAWSLFNDTYTFSRNKR---QLTVNKNGIAWKSDRDHKFGKEVF-------PSNFQNGTLIGGAHLNESIPLSK 243 (354)
Q Consensus 174 i~PCGliA~S~FNDtF~l~~~~~---~i~~~~~gIaW~sD~~~kF~~~~~-------p~~w~~~~~~~~~~~~~~~~~~~ 243 (354)
|+||||||||||||||++...+. .++++++||||++|+ +||+++.+ |+||+++.+.|+ ..+++.++.+
T Consensus 167 i~PCGlIAnSlFNDTf~~~~~~~~~~~~~l~~kgIaW~sDk-~kf~~p~~n~~~~~pPpnW~k~~~~gg-~~d~n~pl~~ 244 (351)
T KOG2952|consen 167 IYPCGLIANSLFNDTFELSLTNDGDSDYPLTTKGIAWESDK-HKFRKPIYNASGIVPPPNWQKGYPEGG-YTDDNIPLSE 244 (351)
T ss_pred eeecchhcchhcccccchhcccCCCccceeccCCccchhhh-hhhcCCCCccccccCCccccccCCcCC-cCCCCCCchh
Confidence 99999999999999999976543 789999999999999 89998655 999999988887 6777777899
Q ss_pred chhHHHHhhcCCCchhHHhhhccccc-CCCCCEEEEEEeeeecCcccCceEEEEEEeccccCcCccchhHHHHHHHHHHH
Q 018560 244 QEDLIVWMRTAALPTFRKLYGKIEVD-LEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCF 322 (354)
Q Consensus 244 ne~FivWMr~Aalp~FrKLYg~i~~~-L~~G~~y~v~I~nnypv~~F~G~K~iVLst~s~~GgkN~fLGi~yivvG~i~~ 322 (354)
||+||||||+||||+||||||+|+++ |++| +|+++|++||||+.|+|+|++||||+||+||||+||||+|||||++|+
T Consensus 245 nedfivWMRtAAlPtFrKLy~~i~~~gL~~G-~y~l~i~~Nypv~sf~G~K~~vlst~SwlGgkN~FLgI~YLvVG~ic~ 323 (351)
T KOG2952|consen 245 NEDFIVWMRTAALPTFRKLYRIIESNGLPKG-TYQLNITNNYPVRSFNGKKKFVLSTTSWLGGKNPFLGIAYLVVGSICI 323 (351)
T ss_pred hHHHHHHHHhcccchHHHHHhhhccCCCCCc-eEEEEEecccceeecCCceEEEEeeccccccCCccceehHHHHHHHHH
Confidence 99999999999999999999999986 9999 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccCCC
Q 018560 323 FLALSFTIVYLVKPRRLGDPSYLSWNRN 350 (354)
Q Consensus 323 l~~l~fli~~~~~pr~lgd~~~L~w~~~ 350 (354)
++|++|++.|+++||++||+++|+|++.
T Consensus 324 ~l~~~f~~~~l~~~r~~~d~~~l~~~~~ 351 (351)
T KOG2952|consen 324 LLGLIFLVIYLFKPRRLGDPSYLSWNRS 351 (351)
T ss_pred HHHHHHHHHHhhcccccCCccccccccC
Confidence 9999999999999999999999999974
No 2
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-99 Score=709.74 Aligned_cols=322 Identities=41% Similarity=0.707 Sum_probs=284.1
Q ss_pred CCCcCCCCCCCCcccccccCCcccccchhHHHHHHHHHHHHHHHHHHHhhhhcCCeEEEEEeCCCCCCCCCc------cC
Q 018560 24 APRRSSKRPKYSKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVAN------RT 97 (354)
Q Consensus 24 ~~~~~s~~p~~~~f~QQ~L~aw~p~ltp~~vi~~f~~igi~fi~iGi~l~~~s~~v~E~~i~Yd~~c~~~~~------~~ 97 (354)
++..++|||.+++|+|||||||||++||+.|+++||++|++|.+||+.+++++.+|+|++|+|+ +|...+. ++
T Consensus 15 ~~~~k~r~p~nt~F~QQrL~awqpilsp~~vLpL~flig~vf~plG~gl~~~~s~VqeltI~Yt-dc~t~as~~f~~iPs 93 (372)
T COG5035 15 PSLLKSRRPPNTAFRQQRLKAWQPILSPRTVLPLLFLIGIVFAPLGGGLLVASSSVQELTIDYT-DCMTLASDEFSDIPS 93 (372)
T ss_pred cccccccCCchhhHHHhhccccccccCchHHHHHHHHHHHHHhhccceEEEEeeeeeeeeeccc-ccccccchhhhhCch
Confidence 3455789999999999999999999999999999999999999999999999999999999997 5875442 11
Q ss_pred cceeeee--------------cC--CCceeEEEEEecCCCCCceEEEEEecchhhhhhhhhhCCChhhhcCcCCC--CCC
Q 018560 98 DKVAFIQ--------------SN--ASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKT--SET 159 (354)
Q Consensus 98 ~~~~~~~--------------~~--~~~~C~i~f~i~~~m~~pVyvYY~L~NFyQNHRrYv~S~s~~QL~G~~~~--~~~ 159 (354)
+++.++- ++ +...|++.|++|++||.|||+||+|+|||||||||++|.|.+||+|+... ...
T Consensus 94 ~~~~~~f~~~~~~~pqW~~~~~~~~d~~~C~irf~vp~~~k~~vfiyyrl~nFyQNhrRY~~S~d~dQl~Ge~~~~~~l~ 173 (372)
T COG5035 94 EYIQFHFKKKVNVLPQWRFSTDEEDDFQKCQIRFTVPSDMKKPVFIYYRLTNFYQNHRRYVKSFDEDQLRGEALKSDDLK 173 (372)
T ss_pred hheeeeeecccccccceeecccccCCcceeEEEEEchhhcccceeeeehhHHHHHhhHHHHhccCHHHhcCccccccccc
Confidence 2222221 11 13579999999999999999999999999999999999999999999643 223
Q ss_pred CCCCCcccCCCCCeeecchhhhcccccceeecccC----CcceeeeccccccCCccccccCCC-------CCCCCCCCCc
Q 018560 160 SQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRN----KRQLTVNKNGIAWKSDRDHKFGKE-------VFPSNFQNGT 228 (354)
Q Consensus 160 ~~C~P~~~~~~g~~i~PCGliA~S~FNDtF~l~~~----~~~i~~~~~gIaW~sD~~~kF~~~-------~~p~~w~~~~ 228 (354)
+.|.|+++ .++|+||||||||||||||||+.... ++.+.++.+||||.+|+ ++|+++ ++||+|.+.+
T Consensus 174 ~nC~PL~~-nedK~~YPcGLIaNSmfNDtf~~~l~~i~Dts~Y~lttkgIaW~sDr-~rykktkYn~sdIvpPPnW~k~y 251 (372)
T COG5035 174 SNCKPLSY-NEDKIIYPCGLIANSMFNDTFSSLLTGIEDTSNYNLTTKGIAWESDR-HRYKKTKYNASDIVPPPNWAKMY 251 (372)
T ss_pred ccCCcccc-cCCCeeecccccccccccccchhhccccccccccccccCCccchhhc-ccccCCCCChhhcCCCCchHhhC
Confidence 68999998 45699999999999999999987542 34688999999999999 588764 6799999988
Q ss_pred ccCCcccCCCCCCCCchhHHHHhhcCCCchhHHhhhcccc-cCCCCCEEEEEEeeeecCcccCceEEEEEEeccccCcCc
Q 018560 229 LIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEV-DLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKN 307 (354)
Q Consensus 229 ~~~~~~~~~~~~~~~ne~FivWMr~Aalp~FrKLYg~i~~-~L~~G~~y~v~I~nnypv~~F~G~K~iVLst~s~~GgkN 307 (354)
++|+.+ ++-+++.++|.|+||||+||||+|+||++|.+. +|++| +|+++|+.||||..|+|+|+|||+|.|.+||||
T Consensus 252 pdGYtd-~NiPDls~wE~Fq~WMrtAafP~F~KLa~~N~~d~l~~G-~Y~lnI~l~fPv~~f~GtKsi~Ltt~SviGgkN 329 (372)
T COG5035 252 PDGYTD-DNIPDLSTWEEFQNWMRTAAFPKFSKLAMRNVNDVLPPG-TYQLNITLNFPVLEFNGTKSIVLTTNSVIGGKN 329 (372)
T ss_pred CCCCCc-cCCCcchhHHHHHHHhhcccCchHHHHhcccccccCCCc-eEEEEEEeecceeecCCceEEEEEecccccCCC
Confidence 888653 223567899999999999999999999999865 69999 699999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 018560 308 DFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRN 350 (354)
Q Consensus 308 ~fLGi~yivvG~i~~l~~l~fli~~~~~pr~lgd~~~L~w~~~ 350 (354)
+||||+|||||++|.++|++|++.++++||++||++||+|+++
T Consensus 330 ~fLGI~ylivg~ical~~~if~~~~~f~pR~~~Dh~yLnw~~~ 372 (372)
T COG5035 330 YFLGIVYLIVGGICALLGLIFLIKWLFKPRKMADHSYLNWNME 372 (372)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhCCcccCCcccccccCC
Confidence 9999999999999999999999999999999999999999974
No 3
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=100.00 E-value=2.4e-84 Score=620.77 Aligned_cols=262 Identities=52% Similarity=0.865 Sum_probs=226.1
Q ss_pred hhhhcCCeEEEEEeCCCCCCCCCccCcceeeeecCCCceeEEEEEecCCCCCceEEEEEecchhhhhhhhhhCCChhhhc
Q 018560 72 SLLASRDVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLK 151 (354)
Q Consensus 72 l~~~s~~v~E~~i~Yd~~c~~~~~~~~~~~~~~~~~~~~C~i~f~i~~~m~~pVyvYY~L~NFyQNHRrYv~S~s~~QL~ 151 (354)
|++++++|+|++++||+.|...... ........++|.++|+||++|++||||||||+|||||||||++|||++||+
T Consensus 1 ll~~s~~v~E~~~~Yd~~~~~~~~~----~~~~~~~~~~c~v~f~i~~~~~~pVyvYY~L~nFYQNhr~y~~S~~~~QL~ 76 (278)
T PF03381_consen 1 LLVASNSVVEIEIRYDDCCDCQNCY----INEFSPIPCTCSVTFNIPEDMKGPVYVYYELTNFYQNHRRYVKSRSDSQLK 76 (278)
T ss_pred CEEEeCCEEEEEEECCCCCCCCCcc----ccccCCCCceEEEEEEcCccCCCCEEEEEEEehhhHHhHHHHhcCCHHHhC
Confidence 5788999999999999888653210 000011146899999999999999999999999999999999999999999
Q ss_pred CcCCC-CCCCCCCCcccC--CCCCeeecchhhhcccccceeeccc----CCcceeeeccccccCCccccccCCC------
Q 018560 152 KRSKT-SETSQCEPEDTT--PDGKPIVPCGLIAWSLFNDTYTFSR----NKRQLTVNKNGIAWKSDRDHKFGKE------ 218 (354)
Q Consensus 152 G~~~~-~~~~~C~P~~~~--~~g~~i~PCGliA~S~FNDtF~l~~----~~~~i~~~~~gIaW~sD~~~kF~~~------ 218 (354)
|+... ++.++|+|+++. .++++++||||||||||||||+|.. .++.++++++||+|++|++.+|+++
T Consensus 77 G~~~~~~~~~~C~p~~~~~~~~~~~~~PCGliA~S~FNDtF~l~~~~~~~~~~~~~~~~gIaw~~d~~~~fk~~~~~~~~ 156 (278)
T PF03381_consen 77 GKIVSKSDLSDCDPLRTNNENNGKIIYPCGLIANSMFNDTFSLYRRNSGNNENIPLDETGIAWSSDRESKFKNPHYNNSN 156 (278)
T ss_pred CCccccCCCCCCCCceeccCCCCCEeecccHhHhhhccceEEeeecccCCCceeeeecccccCchHHHHhcCCCCCcccc
Confidence 99732 446799999984 4778999999999999999999973 3467899999999999999999873
Q ss_pred -CCCCCCCCCcccCCcccCCCCC-CCCchhHHHHhhcCCCchhHHhhhcc-cccCCCCCEEEEEEeeeecCcccCceEEE
Q 018560 219 -VFPSNFQNGTLIGGAHLNESIP-LSKQEDLIVWMRTAALPTFRKLYGKI-EVDLEENDIIDVILENNYNTYSFSGKKKL 295 (354)
Q Consensus 219 -~~p~~w~~~~~~~~~~~~~~~~-~~~ne~FivWMr~Aalp~FrKLYg~i-~~~L~~G~~y~v~I~nnypv~~F~G~K~i 295 (354)
++|++|.... +.+...+ ..+|||||||||+||||+|||||||| +++|++|+ |+|+|+|||||+.|+|+|+|
T Consensus 157 ~~~~~~W~~~~-----~~~~~~p~~~~ne~fivWMr~a~lp~FrKLYg~i~~~~L~~G~-y~i~I~nnypv~~f~G~K~i 230 (278)
T PF03381_consen 157 TVPPPNWRPGY-----ENDTPWPDNSENEHFIVWMRPAALPTFRKLYGRIDNDDLPAGN-YTIDITNNYPVSSFGGKKSI 230 (278)
T ss_pred ccCCCceeeec-----cCCCCCCcccccHHHHHHhccccCCCeeEeEeeeccCCCCCce-EEEEEEEeecccccCcEEEE
Confidence 3577774321 2222233 34699999999999999999999999 88999995 99999999999999999999
Q ss_pred EEEeccccCcCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 018560 296 VLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPS 343 (354)
Q Consensus 296 VLst~s~~GgkN~fLGi~yivvG~i~~l~~l~fli~~~~~pr~lgd~~ 343 (354)
||+|+||+||||+||||+|||+|+||+++|++|++.|+++||++||++
T Consensus 231 vlst~s~~Ggkn~~Lgi~ylvvg~i~~v~~i~~~~~~~~~~r~~gD~~ 278 (278)
T PF03381_consen 231 VLSTTSWFGGKNYFLGIAYLVVGGICLVLAIIFLIIHYFKPRKLGDTS 278 (278)
T ss_pred EEEeccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999985
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.27 E-value=0.66 Score=39.69 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018560 311 GIAYLTVGGLCFFLALSFTIVYLVKP 336 (354)
Q Consensus 311 Gi~yivvG~i~~l~~l~fli~~~~~p 336 (354)
.|+.||+|+++-++++++++.++++.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHH
Confidence 36677778887777777777777653
No 5
>COG1470 Predicted membrane protein [Function unknown]
Probab=61.35 E-value=33 Score=35.81 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=33.1
Q ss_pred cccCCCCCEEEEEEeeeecCcccCceEEEEEEeccccCcCccchhHHHH
Q 018560 267 EVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYL 315 (354)
Q Consensus 267 ~~~L~~G~~y~v~I~nnypv~~F~G~K~iVLst~s~~GgkN~fLGi~yi 315 (354)
..+-.+|+ |.+.|+-.=+...+..+=.|+.-+.|--| ++||+-|
T Consensus 453 P~~a~aGd-Y~i~i~~ksDq~s~e~tlrV~V~~sS~st----~iGI~Ii 496 (513)
T COG1470 453 PEDAGAGD-YRITITAKSDQASSEDTLRVVVGQSSTST----YIGIAII 496 (513)
T ss_pred CCCCCCCc-EEEEEEEeeccccccceEEEEEeccccch----hhhHHHH
Confidence 34678887 99999888888899888888888877655 4555444
No 6
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=54.72 E-value=10 Score=32.84 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=33.5
Q ss_pred hhcCCCchhHHhhhcccccCCCCCEEEEEEeeeecCcccCceEEEEEEe
Q 018560 251 MRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLST 299 (354)
Q Consensus 251 Mr~Aalp~FrKLYg~i~~~L~~G~~y~v~I~nnypv~~F~G~K~iVLst 299 (354)
|+.|+-++|.=.-..=+..|++| +|++.++-...-..|.-+|.|.|+.
T Consensus 84 ~~mAPNS~f~~~i~~~~~~lk~G-~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 84 MQMAPNSNFNFPIPLGGKKLKPG-KYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CEECCCCeEEeEecCCCcCccCC-EEEEEEEEEcCCcEEEEEEEEEECH
Confidence 44566565542211113579999 5999999888888888889888864
No 7
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=51.53 E-value=40 Score=28.52 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 018560 54 VILTFLVVGIAFVPIGITSLLA 75 (354)
Q Consensus 54 vi~~f~~igi~fi~iGi~l~~~ 75 (354)
...+++++|++++.+|++++..
T Consensus 46 la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 46 LAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3557788899999999877765
No 8
>PF10204 DuoxA: Dual oxidase maturation factor; InterPro: IPR018469 DuoxA (Dual oxidase maturation factor) is the essential protein necessary for the final release of DUOX2 (an NADPH:O2 oxidoreductase flavoprotein) from the endoplasmic reticulum. Dual oxidases (DUOX1 and DUOX2) constitute the catalytic core of the hydrogen peroxide generator, which generates H2O2 at the apical membrane of thyroid follicular cells, essential for iodination of thyroglobulin by thyroid peroxidases. DuoxA carries five membrane-integral regions including a reverse signal-anchor with external N terminus (type III) and two N-glycosylation sites []. It is conserved from nematodes to humans.; GO: 0015031 protein transport, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=45.77 E-value=17 Score=35.42 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=26.1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 018560 306 KNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLG 340 (354)
Q Consensus 306 kN~fLGi~yivvG~i~~l~~l~fli~~~~~pr~lg 340 (354)
.+.+| =+++|.+|+++|+++++.++.+|.++.
T Consensus 240 ~~Fwl---~LatGiLc~l~G~~i~~ld~~~p~~l~ 271 (281)
T PF10204_consen 240 WCFWL---TLATGILCLLLGLIIVFLDYIRPHKLS 271 (281)
T ss_pred cHHHH---HHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 55554 267899999999999999999997653
No 9
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=45.39 E-value=33 Score=29.40 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=19.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018560 308 DFLGIAYLTVGGLCFFLALSFTIVYLVKPR 337 (354)
Q Consensus 308 ~fLGi~yivvG~i~~l~~l~fli~~~~~pr 337 (354)
-..||++-||+||.+++.+++++++..+.|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357888888877777666666555555544
No 10
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=43.66 E-value=25 Score=28.99 Aligned_cols=38 Identities=21% Similarity=0.500 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCC
Q 018560 309 FLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNP 351 (354)
Q Consensus 309 fLGi~yivvG~i~~l~~l~fli~~~~~pr~lgd~~~L~w~~~~ 351 (354)
|+-.+.++ +|+.+++|+...++..+. |-..||||.++-
T Consensus 3 f~~~vl~l-~g~llligftivvl~vyf----grk~ylswakpy 40 (126)
T PF13120_consen 3 FIKMVLLL-IGTLLLIGFTIVVLLVYF----GRKFYLSWAKPY 40 (126)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhhhhee----cceeeeeecChh
Confidence 33444454 444555555544444333 445699998763
No 11
>PF12669 P12: Virus attachment protein p12 family
Probab=41.64 E-value=20 Score=26.62 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Q 018560 315 LTVGGLCFFLALSFTIVYLVKPRRLG 340 (354)
Q Consensus 315 ivvG~i~~l~~l~fli~~~~~pr~lg 340 (354)
||+|+|.++++++.++.++++.++-|
T Consensus 2 iII~~Ii~~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 2 IIIGIIILAAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566655554433456777766666
No 12
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=40.24 E-value=19 Score=30.66 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 018560 52 KWVILTFLVVGIAFVPIGITSLL 74 (354)
Q Consensus 52 ~~vi~~f~~igi~fi~iGi~l~~ 74 (354)
+||+.++||+.++++.++.++.-
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666656554443
No 13
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=38.98 E-value=34 Score=31.84 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 018560 312 IAYLTVGGLCFFLALSFTIVYLVKP 336 (354)
Q Consensus 312 i~yivvG~i~~l~~l~fli~~~~~p 336 (354)
|+.++.|++|+++++++.+.++.+.
T Consensus 103 I~lv~~g~~lLla~~~~~~Y~~~~R 127 (202)
T PF06365_consen 103 IALVTSGSFLLLAILLGAGYCCHQR 127 (202)
T ss_pred EehHHhhHHHHHHHHHHHHHHhhhh
Confidence 3457778888888877775555543
No 14
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=38.01 E-value=50 Score=27.66 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=16.5
Q ss_pred hhHHHHHHHHH---HHHHHHHHHHhhh
Q 018560 51 PKWVILTFLVV---GIAFVPIGITSLL 74 (354)
Q Consensus 51 p~~vi~~f~~i---gi~fi~iGi~l~~ 74 (354)
..++..+++++ |++|+.+|+.+++
T Consensus 121 ~~~~~~~~~~~~~lG~~~~~~gl~~~v 147 (148)
T PF12158_consen 121 GLWLMFIFGFGFILGLIFFLVGLFMLV 147 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555554444 8999999998765
No 15
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=32.74 E-value=76 Score=23.32 Aligned_cols=27 Identities=22% Similarity=0.344 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCeE
Q 018560 54 VILTFLVVGIAFVPIGITSLLASRDVV 80 (354)
Q Consensus 54 vi~~f~~igi~fi~iGi~l~~~s~~v~ 80 (354)
|+.=.++--++++.+|+++++.+++-.
T Consensus 25 Viik~vismimylilGi~L~yis~~~~ 51 (54)
T PF04835_consen 25 VIIKSVISMIMYLILGIALIYISSNDD 51 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 333334445677889999888876543
No 16
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=31.81 E-value=40 Score=28.49 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=16.8
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHH
Q 018560 306 KNDFLGIAYLTVGGLCFFLALSFTIVY 332 (354)
Q Consensus 306 kN~fLGi~yivvG~i~~l~~l~fli~~ 332 (354)
|-..|+++.+++|.+++++|+++++-+
T Consensus 42 K~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 42 KSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566666667777666666555543
No 17
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=31.67 E-value=62 Score=28.43 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhc
Q 018560 52 KWVILTFLVVGIAFVPIGITSLLAS 76 (354)
Q Consensus 52 ~~vi~~f~~igi~fi~iGi~l~~~s 76 (354)
.+...+++++|++.+.+|+++.+..
T Consensus 36 ~s~Sg~~l~lG~lvllvGiaMAv~G 60 (141)
T PF10177_consen 36 CSPSGLFLLLGILVLLVGIAMAVLG 60 (141)
T ss_pred ecHHHHHHHHHHHHHHHhhHhheee
Confidence 4456788999999999999876543
No 18
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=30.96 E-value=50 Score=30.99 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 018560 310 LGIAYLTVGGLCFFLALSFT 329 (354)
Q Consensus 310 LGi~yivvG~i~~l~~l~fl 329 (354)
+=|++||+|++.||..++||
T Consensus 130 mLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 130 MLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888877776
No 19
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=30.95 E-value=66 Score=27.68 Aligned_cols=25 Identities=4% Similarity=0.010 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 018560 312 IAYLTVGGLCFFLALSFTIVYLVKP 336 (354)
Q Consensus 312 i~yivvG~i~~l~~l~fli~~~~~p 336 (354)
++.|+..++|+++|+++|...+..-
T Consensus 37 ysiL~Ls~vvlvi~~~LLgrsi~AN 61 (125)
T PF15048_consen 37 YSILALSFVVLVISFFLLGRSIQAN 61 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 3558889999999999988877643
No 20
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=30.24 E-value=13 Score=31.45 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=1.8
Q ss_pred ccCceEEEEEEeccccCcCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 018560 288 SFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLG 340 (354)
Q Consensus 288 ~F~G~K~iVLst~s~~GgkN~fLGi~yivvG~i~~l~~l~fli~~~~~pr~lg 340 (354)
.|.|+..-.|+.---.| +|.+.+|+|+++++-.|+..|+-|
T Consensus 12 ~~kg~~~syitAEEAaG------------IGiL~VILgiLLliGCWYckRRSG 52 (118)
T PF14991_consen 12 PFKGKGHSYITAEEAAG------------IGILIVILGILLLIGCWYCKRRSG 52 (118)
T ss_dssp ----------------S------------SS----------------------
T ss_pred ccccCCcceeeHHHhcc------------ceeHHHHHHHHHHHhheeeeecch
Confidence 45777777777766665 477778888888888877766544
No 21
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=30.06 E-value=56 Score=23.64 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 018560 313 AYLTVGGLCFFLALSFTIVYLVKP 336 (354)
Q Consensus 313 ~yivvG~i~~l~~l~fli~~~~~p 336 (354)
++++|+.++++.-+.+++.+..|.
T Consensus 3 ~~~iV~i~iv~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSICTTLKA 26 (50)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhc
Confidence 567788888877777777777664
No 22
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=28.68 E-value=59 Score=31.30 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 018560 55 ILTFLVVGIAFVPIGITSLLAS 76 (354)
Q Consensus 55 i~~f~~igi~fi~iGi~l~~~s 76 (354)
.++|+++|++|+++||.+.+..
T Consensus 198 ~i~f~llgllfliiaigltvGT 219 (256)
T PF09788_consen 198 AIIFFLLGLLFLIIAIGLTVGT 219 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 5799999999999999887654
No 23
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=28.06 E-value=91 Score=26.63 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018560 311 GIAYLTVGGLCFFLALSFTIVYLVKPRR 338 (354)
Q Consensus 311 Gi~yivvG~i~~l~~l~fli~~~~~pr~ 338 (354)
++..+++|.+.++.|+++++.|+..+++
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~~~~~~~ 112 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILGFFCPIK 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6677888999999999999999988765
No 24
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=27.02 E-value=93 Score=25.24 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=18.4
Q ss_pred cCcCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018560 303 LGGKNDFLGIAYLTVGGLCFFLALSFTIVYL 333 (354)
Q Consensus 303 ~GgkN~fLGi~yivvG~i~~l~~l~fli~~~ 333 (354)
+|-.-.-||+.|+++.++.+++-+.+++...
T Consensus 26 ~~n~~~~Lgm~~lvI~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 26 FVNNWPNLGMWFLVICGIFILLVILWFVCCK 56 (94)
T ss_pred ecCCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3333345788888887776555555555443
No 25
>PRK02935 hypothetical protein; Provisional
Probab=26.50 E-value=85 Score=26.32 Aligned_cols=66 Identities=14% Similarity=0.317 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhh----cCCeEEEEEeCCCCCCCCCccCcceeeeecCCCc-eeEEEEEecCCCCCc
Q 018560 50 TPKWVILTFLVVGIAFVPIGITSLLA----SRDVVEIVDRYETDCIPVANRTDKVAFIQSNASK-TCTRQITVTKHMKRP 124 (354)
Q Consensus 50 tp~~vi~~f~~igi~fi~iGi~l~~~----s~~v~E~~i~Yd~~c~~~~~~~~~~~~~~~~~~~-~C~i~f~i~~~m~~p 124 (354)
+..+++.+|+++|++++..+.++++. |.+.+.++ =- .|.... + .....+-| .|.-..++++++.++
T Consensus 35 ~~~~~m~ifm~~G~l~~l~S~vvYFwiGmlStkavqV~--CP-~C~K~T----K--mLGrvD~CM~C~~PLTLd~~legk 105 (110)
T PRK02935 35 ESIIIMTIFMLLGFLAVIASTVVYFWIGMLSTKAVQVI--CP-SCEKPT----K--MLGRVDACMHCNQPLTLDRSLEGK 105 (110)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeeE--CC-CCCchh----h--hccceeecCcCCCcCCcCcccccc
Confidence 45677889999999999988877743 34444442 21 343210 0 00000112 377777887777664
No 26
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=25.72 E-value=52 Score=31.64 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q 018560 309 FLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSW 347 (354)
Q Consensus 309 fLGi~yivvG~i~~l~~l~fli~~~~~pr~lgd~~~L~w 347 (354)
--+|+|+++|.+.+++++.+.+.-+..-+..|- -|..|
T Consensus 196 kR~i~f~llgllfliiaigltvGT~~~A~~~~g-iY~~w 233 (256)
T PF09788_consen 196 KRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGG-IYVSW 233 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCc-EeHHH
Confidence 357889999999999999998877665555443 24444
No 27
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=25.36 E-value=52 Score=32.08 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018560 313 AYLTVGGLCFFLALSFTIVYLVKPRR 338 (354)
Q Consensus 313 ~yivvG~i~~l~~l~fli~~~~~pr~ 338 (354)
+=|+||++..++.|+.|+.|++..||
T Consensus 273 vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEecc
Confidence 44567777666666667777776554
No 28
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.24 E-value=72 Score=31.42 Aligned_cols=31 Identities=3% Similarity=0.206 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 018560 309 FLGIAYLTVGGLCFFLALSFTIVYLVKPRRL 339 (354)
Q Consensus 309 fLGi~yivvG~i~~l~~l~fli~~~~~pr~l 339 (354)
.++...+++=+|.+|+-+++||++++|.|+|
T Consensus 257 ~I~aSiiaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 257 AIIASIIAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555566677777788877776665
No 29
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.36 E-value=53 Score=23.81 Aligned_cols=24 Identities=25% Similarity=0.330 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 018560 310 LGIAYLTVGGLCFFLALSFTIVYL 333 (354)
Q Consensus 310 LGi~yivvG~i~~l~~l~fli~~~ 333 (354)
|-+.=+|+++|.|++|+++++..-
T Consensus 14 LrigGLi~A~vlfi~Gi~iils~k 37 (50)
T PF02038_consen 14 LRIGGLIFAGVLFILGILIILSGK 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred hhccchHHHHHHHHHHHHHHHcCc
Confidence 445557788888999988776643
No 30
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=23.09 E-value=84 Score=24.84 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCe
Q 018560 57 TFLVVGIAFVPIGITSLLASRDV 79 (354)
Q Consensus 57 ~f~~igi~fi~iGi~l~~~s~~v 79 (354)
++|++|++++++|.++++.....
T Consensus 4 ~~Fl~~l~lliig~~~~v~~~Gf 26 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLFVFQSGF 26 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 45688888888898888776554
No 31
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=22.61 E-value=1.3e+02 Score=25.64 Aligned_cols=24 Identities=29% Similarity=0.699 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 018560 50 TPKWVILTFLVVGIAFVPIGITSLL 74 (354)
Q Consensus 50 tp~~vi~~f~~igi~fi~iGi~l~~ 74 (354)
+|.++ .+..+.-|+|.|||++++.
T Consensus 8 ~~a~I-a~mVlGFi~fWPlGla~La 31 (115)
T PF11014_consen 8 KPAWI-AAMVLGFIVFWPLGLALLA 31 (115)
T ss_pred chHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34443 3333444568888887773
No 32
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.48 E-value=1.1e+02 Score=25.87 Aligned_cols=65 Identities=14% Similarity=0.342 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh----cCCeEEEEEeCCCCCCCCCccCcceeeeecCCCc-eeEEEEEecCCCCCc
Q 018560 51 PKWVILTFLVVGIAFVPIGITSLLA----SRDVVEIVDRYETDCIPVANRTDKVAFIQSNASK-TCTRQITVTKHMKRP 124 (354)
Q Consensus 51 p~~vi~~f~~igi~fi~iGi~l~~~----s~~v~E~~i~Yd~~c~~~~~~~~~~~~~~~~~~~-~C~i~f~i~~~m~~p 124 (354)
-.+++.+|+++|++++..+.++++. |.+.+.++ |-.+...+ +. ....+.| .|.-..++++++.|.
T Consensus 35 ~~~im~ifmllG~L~~l~S~~VYfwIGmlStkav~V~------CP~C~K~T-Km--LGr~D~CM~C~~pLTLd~~legk 104 (114)
T PF11023_consen 35 SPIIMVIFMLLGLLAILASTAVYFWIGMLSTKAVQVE------CPNCGKQT-KM--LGRVDACMHCKEPLTLDPSLEGK 104 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeE------CCCCCChH-hh--hchhhccCcCCCcCccCchhhcc
Confidence 3567889999999998888877744 33344433 43222110 00 0000022 477788888877764
No 33
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.04 E-value=86 Score=26.98 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC
Q 018560 53 WVILTFLVVGIAFVPIGITSLLASR 77 (354)
Q Consensus 53 ~vi~~f~~igi~fi~iGi~l~~~s~ 77 (354)
....++..+|.+++.+|++++++.|
T Consensus 31 ~~~~~l~~lGall~~~gii~fvA~n 55 (145)
T PF09925_consen 31 WLARILLYLGALLLGLGIILFVAAN 55 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999887753
No 34
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.57 E-value=2.4e+02 Score=22.72 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=7.2
Q ss_pred ccchhHHHHHHH
Q 018560 48 ILTPKWVILTFL 59 (354)
Q Consensus 48 ~ltp~~vi~~f~ 59 (354)
-.+|.+..++++
T Consensus 27 ~~sp~W~~p~m~ 38 (87)
T PF06781_consen 27 KPSPRWYAPLML 38 (87)
T ss_pred CCCCccHHHHHH
Confidence 456666666555
No 35
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=21.31 E-value=80 Score=26.02 Aligned_cols=18 Identities=44% Similarity=0.711 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 018560 59 LVVGIAFVPIGITSLLAS 76 (354)
Q Consensus 59 ~~igi~fi~iGi~l~~~s 76 (354)
++.+|+|++|||+.....
T Consensus 69 i~~AI~fFPiGilcc~~~ 86 (98)
T PF10164_consen 69 ILCAIFFFPIGILCCLAM 86 (98)
T ss_pred HHHHHHHHhhHHHHhhhc
Confidence 345889999999887765
No 36
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=21.28 E-value=2.8e+02 Score=27.97 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=28.9
Q ss_pred CchhHHHHhhcCCCchhHHhhhcccc---cCCCCCEEEEEE--eeeecCc
Q 018560 243 KQEDLIVWMRTAALPTFRKLYGKIEV---DLEENDIIDVIL--ENNYNTY 287 (354)
Q Consensus 243 ~ne~FivWMr~Aalp~FrKLYg~i~~---~L~~G~~y~v~I--~nnypv~ 287 (354)
.|+++++=.| -+|||-+..+. +|+.-+.+.|+| .||||+.
T Consensus 73 ~~~R~q~cl~-----e~r~~~~d~~~~~~~~~~~~~~~lHI~S~nNFPtA 117 (395)
T KOG2833|consen 73 SNKRYQRCLR-----EIRRLARDREESEASLPSNGPLKLHIASVNNFPTA 117 (395)
T ss_pred ccHHHHHHHH-----HHHHHhhhhhhhhcccCcCCCeeEEEEecCCCcch
Confidence 4889887666 58999887752 455544689998 4889975
No 37
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=21.11 E-value=3.1e+02 Score=22.57 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 018560 55 ILTFLVVGIAFVPIGITSLLA 75 (354)
Q Consensus 55 i~~f~~igi~fi~iGi~l~~~ 75 (354)
.+.|+.+++.++.+++++.+.
T Consensus 61 ~~~f~~~~~~~v~~~~~~~y~ 81 (105)
T PF10183_consen 61 LPFFFGFSGSLVFGGVFLAYK 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 566777777777677666654
No 38
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=20.89 E-value=1.2e+02 Score=25.23 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=20.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018560 308 DFLGIAYLTVGGLCFFLALSFTIVYLV 334 (354)
Q Consensus 308 ~fLGi~yivvG~i~~l~~l~fli~~~~ 334 (354)
+|+|..|+.+..+.++++++|-+-+++
T Consensus 16 LF~~AIFiAItIlYILLalL~EvPkYI 42 (117)
T PF07234_consen 16 LFFGAIFIAITILYILLALLFEVPKYI 42 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 478888999999999999888554433
No 39
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=20.72 E-value=91 Score=28.35 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=32.0
Q ss_pred ecCcccCceEEEEEEeccccCcC----ccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 018560 284 YNTYSFSGKKKLVLSTTSWLGGK----NDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLG 340 (354)
Q Consensus 284 ypv~~F~G~K~iVLst~s~~Ggk----N~fLGi~yivvG~i~~l~~l~fli~~~~~pr~lg 340 (354)
+|+..+++..+. ++||||=. -..+|++ +..++.|..++..++=+-..+||+.+
T Consensus 44 ~pt~~~dl~~~~---q~s~F~Lsr~eR~vlF~~C-lLGa~ac~a~~~fmfpVl~lkPrkFi 100 (201)
T COG5102 44 FPTRKYDLEHYF---QSSEFGLSRFERAVLFSAC-LLGAGACSAFLYFMFPVLRLKPRKFI 100 (201)
T ss_pred cccccccccccc---ccchhhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhcCcccee
Confidence 688888887654 68898832 2335566 44556666444433333345899865
Done!