Query 018560
Match_columns 354
No_of_seqs 125 out of 521
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:11:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 72.9 6.8 0.00023 26.6 4.9 32 307-338 7-38 (44)
2 2ks1_B Epidermal growth factor 68.1 4.3 0.00015 27.6 3.0 31 308-338 9-39 (44)
3 2jwa_A Receptor tyrosine-prote 41.2 33 0.0011 23.2 3.9 29 307-335 9-37 (44)
4 2k9y_A Ephrin type-A receptor 39.8 27 0.00091 22.6 3.2 23 310-332 13-35 (41)
5 1afo_A Glycophorin A; integral 38.9 36 0.0012 22.4 3.6 25 311-335 11-35 (40)
6 2k1k_A Ephrin type-A receptor 36.8 51 0.0017 21.4 4.1 24 312-335 13-36 (38)
7 2jo1_A Phospholemman; FXYD1, N 29.7 42 0.0014 25.0 3.1 25 310-334 16-40 (72)
8 2jp3_A FXYD domain-containing 26.5 29 0.00098 25.6 1.7 25 310-334 17-41 (67)
9 2knc_B Integrin beta-3; transm 24.8 80 0.0027 23.7 4.0 24 309-332 10-33 (79)
10 3mp7_B Preprotein translocase 19.5 1E+02 0.0035 22.1 3.5 21 310-330 37-57 (61)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=72.92 E-value=6.8 Score=26.63 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=22.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018560 307 NDFLGIAYLTVGGLCFFLALSFTIVYLVKPRR 338 (354)
Q Consensus 307 N~fLGi~yivvG~i~~l~~l~fli~~~~~pr~ 338 (354)
....+|+=-|+|++.+++.+++++..+.+.|+
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 34456888889988887777776666666554
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=68.08 E-value=4.3 Score=27.59 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018560 308 DFLGIAYLTVGGLCFFLALSFTIVYLVKPRR 338 (354)
Q Consensus 308 ~fLGi~yivvG~i~~l~~l~fli~~~~~pr~ 338 (354)
...+|+--|+|++.+++.+++++..+.+.|+
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 3456888889988888777777666666554
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=41.15 E-value=33 Score=23.18 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=17.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018560 307 NDFLGIAYLTVGGLCFFLALSFTIVYLVK 335 (354)
Q Consensus 307 N~fLGi~yivvG~i~~l~~l~fli~~~~~ 335 (354)
.+...|+-.|+|.+++++..+.+++++.+
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 34456778888866555554444445444
No 4
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=39.77 E-value=27 Score=22.59 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 018560 310 LGIAYLTVGGLCFFLALSFTIVY 332 (354)
Q Consensus 310 LGi~yivvG~i~~l~~l~fli~~ 332 (354)
.+|+--+++++.+++++++++..
T Consensus 13 ~~I~~~vv~Gv~ll~~iv~~~~~ 35 (41)
T 2k9y_A 13 LAVIGGVAVGVVLLLVLAGVGFF 35 (41)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEeehhHHHHHHHHHHHHhee
Confidence 44666666777776645544433
No 5
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=38.92 E-value=36 Score=22.44 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 018560 311 GIAYLTVGGLCFFLALSFTIVYLVK 335 (354)
Q Consensus 311 Gi~yivvG~i~~l~~l~fli~~~~~ 335 (354)
.++.+|.|..+-++|.++++.+..+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888999999998888765
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=36.85 E-value=51 Score=21.41 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 018560 312 IAYLTVGGLCFFLALSFTIVYLVK 335 (354)
Q Consensus 312 i~yivvG~i~~l~~l~fli~~~~~ 335 (354)
|+=+|+|++..++.++.++..+.+
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeehHHHHHHHHHHHHHHHHee
Confidence 455666665544444444333333
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=29.71 E-value=42 Score=24.96 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 018560 310 LGIAYLTVGGLCFFLALSFTIVYLV 334 (354)
Q Consensus 310 LGi~yivvG~i~~l~~l~fli~~~~ 334 (354)
|-+.=||+++|.|++|+++++....
T Consensus 16 LRiGGLifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 16 LQIGGLVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHcCcc
Confidence 4555578899999999998887654
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=26.51 E-value=29 Score=25.57 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 018560 310 LGIAYLTVGGLCFFLALSFTIVYLV 334 (354)
Q Consensus 310 LGi~yivvG~i~~l~~l~fli~~~~ 334 (354)
|-+.=||+++|.|++|+++++..-.
T Consensus 17 LRigGLifA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred heecchhhHHHHHHHHHHHHHcCcc
Confidence 4455578899999999988887543
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.78 E-value=80 Score=23.72 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=12.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 018560 309 FLGIAYLTVGGLCFFLALSFTIVY 332 (354)
Q Consensus 309 fLGi~yivvG~i~~l~~l~fli~~ 332 (354)
.++|+.-|+|++.++.-+++++.+
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 456665566665554444444443
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=19.49 E-value=1e+02 Score=22.08 Aligned_cols=21 Identities=10% Similarity=0.320 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 018560 310 LGIAYLTVGGLCFFLALSFTI 330 (354)
Q Consensus 310 LGi~yivvG~i~~l~~l~fli 330 (354)
.|+.++++|.|.+++-+++.+
T Consensus 37 ~~iG~~i~G~iGf~Ikli~~~ 57 (61)
T 3mp7_B 37 TGLGIILIGLIGMLIRIVGIL 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466677778887777766644
Done!