Query 018560
Match_columns 354
No_of_seqs 125 out of 521
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 17:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018560.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018560hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4la1 g.39.1.3 (A:8-36) Four 38.7 2.5 0.00018 24.5 -0.4 20 284-303 6-25 (29)
2 d1x68a1 g.39.1.3 (A:8-36) Four 34.8 4.8 0.00035 23.3 0.4 18 285-302 7-24 (29)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 22.7 54 0.004 18.3 3.6 20 319-338 9-28 (30)
4 d2h80a1 a.60.1.3 (A:11-81) Del 17.5 18 0.0013 25.0 0.8 19 246-264 13-31 (71)
5 d2dkya1 a.60.1.3 (A:8-85) Dele 14.9 23 0.0017 24.9 0.8 20 246-265 18-37 (78)
6 d2axth1 f.23.33.1 (H:2-65) Pho 14.6 1.3E+02 0.0093 20.0 4.6 33 317-349 30-63 (64)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 12.0 1.3E+02 0.0094 16.8 4.0 25 310-335 3-27 (32)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 10.6 1.6E+02 0.012 20.7 4.6 29 310-338 30-58 (100)
9 d2nuja1 d.38.1.1 (A:3-161) Hyp 10.5 1.3E+02 0.0095 22.2 4.4 67 242-310 41-108 (159)
10 d1rh5b_ f.23.28.1 (B:) Preprot 10.0 1.3E+02 0.0096 19.5 3.5 19 311-329 31-49 (56)
No 1
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.65 E-value=2.5 Score=24.55 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=16.8
Q ss_pred ecCcccCceEEEEEEecccc
Q 018560 284 YNTYSFSGKKKLVLSTTSWL 303 (354)
Q Consensus 284 ypv~~F~G~K~iVLst~s~~ 303 (354)
=|++.|+|.|+|-+....|-
T Consensus 6 kPItg~gg~kyisFE~R~WH 25 (29)
T d1x4la1 6 NPISGLGGTKYISFEERQWH 25 (29)
T ss_dssp BCCCCSSSCSCEECSSCEEC
T ss_pred CcccccCCceEEEeeccccc
Confidence 38889999999998887773
No 2
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.84 E-value=4.8 Score=23.29 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=15.5
Q ss_pred cCcccCceEEEEEEeccc
Q 018560 285 NTYSFSGKKKLVLSTTSW 302 (354)
Q Consensus 285 pv~~F~G~K~iVLst~s~ 302 (354)
|++.++|.|+|-+....|
T Consensus 7 PItg~gG~k~isFedR~W 24 (29)
T d1x68a1 7 PISGLTGAKFICFQDSQW 24 (29)
T ss_dssp CCCTTTTCCEEEETTEEE
T ss_pred cccccCCceEEEeehhhc
Confidence 788999999998877666
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.72 E-value=54 Score=18.34 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 018560 319 GLCFFLALSFTIVYLVKPRR 338 (354)
Q Consensus 319 ~i~~l~~l~fli~~~~~pr~ 338 (354)
..++++|++|+.+.+..|-+
T Consensus 9 ifac~i~lfffaiffreppr 28 (30)
T d2axtt1 9 IFACIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 45566777777777665543
No 4
>d2h80a1 a.60.1.3 (A:11-81) Deleted in Liver Cancer 2, DLC2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.52 E-value=18 Score=25.00 Aligned_cols=19 Identities=32% Similarity=0.864 Sum_probs=16.2
Q ss_pred hHHHHhhcCCCchhHHhhh
Q 018560 246 DLIVWMRTAALPTFRKLYG 264 (354)
Q Consensus 246 ~FivWMr~Aalp~FrKLYg 264 (354)
+=--|+|.|+||-+-.||.
T Consensus 13 eAC~WLraaGFpqYAqlyE 31 (71)
T d2h80a1 13 EACDWLRAAGFPQYAQLYE 31 (71)
T ss_dssp HHHHHHHHTTCHHHHHTTT
T ss_pred HHHHHHHHcCChHHHHHhh
Confidence 4457999999999999986
No 5
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.90 E-value=23 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.800 Sum_probs=16.8
Q ss_pred hHHHHhhcCCCchhHHhhhc
Q 018560 246 DLIVWMRTAALPTFRKLYGK 265 (354)
Q Consensus 246 ~FivWMr~Aalp~FrKLYg~ 265 (354)
+=--|.|.|+||-+-.||.-
T Consensus 18 eAC~WLraaGFpqYAqlyEd 37 (78)
T d2dkya1 18 EACDWLRATGFPQYAQLYED 37 (78)
T ss_dssp HHHHHHHHHTCTTHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHhhc
Confidence 44579999999999999963
No 6
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.60 E-value=1.3e+02 Score=20.05 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHH-HHHHHhcCCCCCCCcccccCC
Q 018560 317 VGGLCFFLALSF-TIVYLVKPRRLGDPSYLSWNR 349 (354)
Q Consensus 317 vG~i~~l~~l~f-li~~~~~pr~lgd~~~L~w~~ 349 (354)
+|++..++++++ ++..++.+-.+-|.-..+|+.
T Consensus 30 Mgv~m~Lf~vfl~iiLeiYNss~lldgv~v~W~~ 63 (64)
T d2axth1 30 MAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKA 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCTTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhccceeeccccccccc
Confidence 555555555544 455788888888888889963
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.03 E-value=1.3e+02 Score=16.84 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018560 310 LGIAYLTVGGLCFFLALSFTIVYLVK 335 (354)
Q Consensus 310 LGi~yivvG~i~~l~~l~fli~~~~~ 335 (354)
||.+|-+| .+++++|+..-++..++
T Consensus 3 lgavfyiv-fialffgiavgiifaik 27 (32)
T d2e74e1 3 LGAVFYIV-FIALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHH-HHHHHHHHHhhheeeEE
Confidence 45443332 34455554444433333
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.61 E-value=1.6e+02 Score=20.67 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018560 310 LGIAYLTVGGLCFFLALSFTIVYLVKPRR 338 (354)
Q Consensus 310 LGi~yivvG~i~~l~~l~fli~~~~~pr~ 338 (354)
..+..++++...++.++++.+...++.|+
T Consensus 30 ~~v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 30 GFILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 33445555555666666555554444443
No 9
>d2nuja1 d.38.1.1 (A:3-161) Hypothetical protein Jann_1972 {Jannaschia sp. CCS1 [TaxId: 290400]}
Probab=10.49 E-value=1.3e+02 Score=22.23 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=44.9
Q ss_pred CCchhHHHHhhcCCCchhHHhhhcccccCCCCC-EEEEEEeeeecCcccCceEEEEEEeccccCcCccch
Q 018560 242 SKQEDLIVWMRTAALPTFRKLYGKIEVDLEEND-IIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFL 310 (354)
Q Consensus 242 ~~ne~FivWMr~Aalp~FrKLYg~i~~~L~~G~-~y~v~I~nnypv~~F~G~K~iVLst~s~~GgkN~fL 310 (354)
+.|-++..||..|-.--|+++..-. ..+.|. -..++++-.|--..+-|.+..|-+....+|++...+
T Consensus 41 v~n~~Y~~~~e~ar~~~l~~~g~~~--~~~~~~~~vv~~~~i~y~~p~~~gd~v~v~~~v~~~~~~s~~~ 108 (159)
T d2nuja1 41 VNHTAYLRWYESFRLPFLKARHVTD--YGPTSPRLVLKQVHCTYLAEMGMGEDYVITGRVSNFRTTSFTM 108 (159)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTTSCC--CSSSSCEEEEEEEEEEECSCCCTTCEEEEEEEEEEECSSEEEE
T ss_pred eehHHHHHHHHHHHHHHHHHhhhhc--ccchhcceeeeEEEEEEecccccCcEEEEEEEEEecCCcEEEE
Confidence 4678999999999888888875322 223331 234445555666666788888888888888776543
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.03 E-value=1.3e+02 Score=19.54 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 018560 311 GIAYLTVGGLCFFLALSFT 329 (354)
Q Consensus 311 Gi~yivvG~i~~l~~l~fl 329 (354)
|+-++++|.|.+++-+++.
T Consensus 31 ~iG~~i~G~IGf~I~li~~ 49 (56)
T d1rh5b_ 31 ALGISLLGIIGYIIHVPAT 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666777666655554
Done!