BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018562
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XA65|PUS1_ARATH RNA pseudourine synthase 1 OS=Arabidopsis thaliana GN=At1g56345
PE=2 SV=1
Length = 322
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/335 (58%), Positives = 241/335 (71%), Gaps = 32/335 (9%)
Query: 23 KTFFSLASMSNP--TEP-------TSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSAS 73
+ FFS +N T+P + + NYP P+S P P ISKDIEL RAM AS
Sbjct: 5 RNFFSFTFSANSIITKPYFAIPIKAMEATSELNLNYPKPISAPPPPISKDIELRRAMEAS 64
Query: 74 SKSSLYKLSRSDVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKL 133
SKSSL+ L+R D+LYEDE+L+AVNKP+GVYCE+VL S P ++ S+E
Sbjct: 65 SKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAVLRSAPQIVLDSSSE------------ 112
Query: 134 NLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITI 193
HLANRLDRDTSGVM+ITKSHKVA+KLVKAFT+HK+ K+YIALCIG +P W+R+T+
Sbjct: 113 ----YHLANRLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYIALCIGSSPNWRRVTV 168
Query: 194 ISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEEN 253
SGHGRSK GAWRVYAA DVGRVLPGGS VRDM T+FEV+SVN + E EL+ + N
Sbjct: 169 SSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKN--ESCELE--DVN 224
Query: 254 NIVV---EKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWN 310
+++V E++ D ++VRAFPRSGRTHQIRLHCQYLGI IRGDVKY GVYEWN
Sbjct: 225 HVIVAEGERELSCGGDDDDVVVVVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYHGVYEWN 284
Query: 311 GKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLWG 345
G+ ++GHELHAE LS DHPVTG ++++APLP W
Sbjct: 285 GRTFEGHELHAECLSLDHPVTGDSIVIRAPLPYWA 319
>sp|Q2QNM3|PUS1_ORYSJ RNA pseudourine synthase 1 OS=Oryza sativa subsp. japonica
GN=Os12g0560500 PE=2 SV=1
Length = 345
Score = 358 bits (920), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 186/298 (62%), Positives = 221/298 (74%), Gaps = 20/298 (6%)
Query: 59 AISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGVYCESVLASVPCLLA-- 116
A SKD+EL RAM+AS++S+ S + V++EDEWL V+KP GVYC+++L+++PC A
Sbjct: 61 AASKDVELRRAMTASARSA--AYSSAPVVFEDEWLAVVDKPAGVYCDALLSALPCSAATL 118
Query: 117 GDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKT 176
GD E TK NL HLANRLDRDTSG+MVITK +KVA KLVKAFT+HKV KT
Sbjct: 119 GD----------EATKPNL---HLANRLDRDTSGLMVITKCNKVAGKLVKAFTEHKVKKT 165
Query: 177 YIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVN 236
Y+ALCIG P W++I I SGHGRSK GAWRVYA SDVGR LPGGSVVRDM T FEVL +N
Sbjct: 166 YLALCIGYPPAWEKIKICSGHGRSKHGAWRVYAMSDVGRSLPGGSVVRDMSTRFEVLGIN 225
Query: 237 GEGSFKEPSELQEHEENNIVVEKKA---VLDADAKKNEILVRAFPRSGRTHQIRLHCQYL 293
G+G F+EPS + E +I V++KA D D K + ILVRA+P+SGRTHQIRLHCQYL
Sbjct: 226 GKGQFREPSNFEVDETESITVQEKAADLTSDGDEKNSIILVRAYPQSGRTHQIRLHCQYL 285
Query: 294 GISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLWGTEALQS 351
G IRGDVKY GV EWNG YDGH LHAESLSF HPVTG PV ++PLP W E + +
Sbjct: 286 GFPIRGDVKYSGVIEWNGVDYDGHALHAESLSFVHPVTGLPVTFRSPLPSWANEFIST 343
>sp|Q45480|YLYB_BACSU Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus
subtilis (strain 168) GN=ylyB PE=3 SV=3
Length = 303
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 119/275 (43%), Gaps = 59/275 (21%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLN-LLELHLANR 143
D+ YED+ ++ VNKP+G+ V+ P L G ++ + +N ++ + +R
Sbjct: 81 DIYYEDQDVLVVNKPRGM----VVHPAPGHLTGTLVNGLMAHCTDLSGINGVMRPGIVHR 136
Query: 144 LDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFG 203
+D+DTSG++++ K+ LV + V++ Y A+ G TI + GR K
Sbjct: 137 IDKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLI-SHDDGTIDAPIGRDKKD 195
Query: 204 AWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVL 263
+ D ++ VT F VL F++ +
Sbjct: 196 RQSMTVTRDG----------KNAVTHFHVLE-----RFQDFT------------------ 222
Query: 264 DADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKR----YDGHEL 319
LV +GRTHQIR+H +Y+G + GD KY G R ++G L
Sbjct: 223 ---------LVECQLETGRTHQIRVHMKYIGFPLAGDPKY-------GPRKTIDFNGQAL 266
Query: 320 HAESLSFDHPVTGCPVMVQAPLPLWGTEALQSSSK 354
HA L FDHP TG V +APLP E +++ K
Sbjct: 267 HAGVLGFDHPRTGEYVEFEAPLPEDMAELIENLRK 301
>sp|Q8FIP7|RLUC_ECOL6 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluC
PE=3 SV=1
Length = 319
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 113/263 (42%), Gaps = 60/263 (22%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
+LYED+ ++ +NKP G ++ G A R L L +RLD
Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF----------LELVHRLD 144
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSGV+++ K L + + + K Y+AL G W
Sbjct: 145 RDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV--------------------RGQW 184
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFE-VLSVNGEGSFKEPSELQEHEENNIVVEKKAVLD 264
+ Y S ++++++ S E ++ V+ EG +PSE VE++
Sbjct: 185 QSYVKS------VQAPLLKNILQSGERIVRVSQEG---KPSE------TRFKVEERYAFA 229
Query: 265 ADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWN------GKRYDGHE 318
LVR P +GRTHQIR+H QY G I D +Y G E++ G +
Sbjct: 230 T-------LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY-GDREFDRQLTEAGTGLNRLF 281
Query: 319 LHAESLSFDHPVTGCPVMVQAPL 341
LHA +L F HP TG + ++AP+
Sbjct: 282 LHAAALKFTHPGTGEVMRIEAPM 304
>sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rluC PE=3 SV=1
Length = 315
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 142/342 (41%), Gaps = 85/342 (24%)
Query: 21 FRKTF----FSLASMSNPTEPTSQNAPQTQQNYPTPL--SPPLPAISKDIELTRAMSASS 74
RKTF F+L T N + QNY L S +P I+ + + + ++
Sbjct: 26 LRKTFKRLPFNLICKIIRTGQIRINKKRINQNYKLKLGDSVRIPPITIQSDSNKKIKLNT 85
Query: 75 KSSLYKLSRSDVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLN 134
+ S+ + + +LYED + + +NKP G+ S S SG ++ G N
Sbjct: 86 RLSI--IFNNMILYEDNYFLILNKPSGM----------------SVHSGSG-INYGMIEN 126
Query: 135 LL-------ELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPK 187
L L L +RLDRDTSGV++I K + L + + K+ K Y+AL G P
Sbjct: 127 LRILRPYNRYLDLVHRLDRDTSGVLIIAKKRSILRNLHEQLREKKIKKKYVALVHGVWPD 186
Query: 188 -WKRIT--IISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEP 244
K I+ ++ R ++ ++ P G ++ +T F
Sbjct: 187 ILKSISKPLLKTSSR---------KNKNIVKIDPKG---KESITHFN------------- 221
Query: 245 SELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYE 304
++KK + L+ P +GRTHQIR+H +L I D KY
Sbjct: 222 ------------IKKKYTKNT-------LISITPITGRTHQIRVHLLHLNYPIVLDAKY- 261
Query: 305 GV-----YEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPL 341
G+ + N + LHAES++F HP +++ APL
Sbjct: 262 GIKKLDYFIKNKFNINRLLLHAESINFFHPKRKKNILITAPL 303
>sp|Q8D8G1|RLUC_VIBVU Ribosomal large subunit pseudouridine synthase C OS=Vibrio
vulnificus (strain CMCP6) GN=rluC PE=3 SV=1
Length = 315
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 126/306 (41%), Gaps = 73/306 (23%)
Query: 55 PPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGVYCESVLASVPCL 114
PP+ KD E + + + L L ++YED+ L+ +NKP G
Sbjct: 69 PPVTLEKKDPETAPSTKLNKVAELQDL----IIYEDDHLLVLNKPSGTAVHGGSGLKFGA 124
Query: 115 LAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVS 174
+ A R L L +R+DRDTSG++++ K L F + V
Sbjct: 125 IEALRALRPEARF----------LELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQ 174
Query: 175 KTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLS 234
K Y AL +G +WK + +V A ++++ V S ++
Sbjct: 175 KYYFALVMG---EWK-------------NSCKVVNAP----------LLKNEVNS--IVR 206
Query: 235 VNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLG 294
VN G +PSE + V+EK LV+A P +GRTHQIR+H QY G
Sbjct: 207 VNPNG---KPSETRFK-----VIEKFP--------QATLVQASPITGRTHQIRVHTQYSG 250
Query: 295 ISIRGDVKYEGVYEWNGKRYDGHE---------LHAESLSFDHPVTGCPVMVQAPLPLWG 345
I D +Y +R+D + LHA ++ F HP T P+ + AP+
Sbjct: 251 HPIAWDDRY------GDRRFDAYTAQHGLNRLFLHAANIRFTHPATEQPMEINAPMGEQL 304
Query: 346 TEALQS 351
+ +QS
Sbjct: 305 EKVVQS 310
>sp|O50310|Y723_CHLP8 Uncharacterized RNA pseudouridine synthase Cpar_0723
OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0723
PE=3 SV=1
Length = 327
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 125/310 (40%), Gaps = 80/310 (25%)
Query: 51 TPLSPPLPAIS-KDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGVYCESVLA 109
T L PP P ++ +DI +T +LYED+ L+ ++K G+
Sbjct: 61 TFLRPPAPELAPEDIPIT------------------ILYEDDDLMVIDKEAGMVVHPAFG 102
Query: 110 SVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFT 169
+ LA ++ G+ ++ + + +RLD+DTSG+++I K+ KL + F
Sbjct: 103 NWTGTLA-NAILHHLGKDADELDKTEMRPGIVHRLDKDTSGLIIIAKNPTALHKLARQFA 161
Query: 170 DHKVSKTYIALCIGPAPKWKRITIISGHGRS----KFGAWRVYAASDVGRVLPGGSVVRD 225
+ +V K Y A+ G PK + TI + GRS K A Y ++ + VV D
Sbjct: 162 NRQVEKVYKAIVWG-VPKAESGTIKTNIGRSHKNRKVMANFPYEGAEGKHAITDYQVVED 220
Query: 226 MVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQ 285
+ G F L+ +GRTHQ
Sbjct: 221 L------------GYFS------------------------------LMDVTLHTGRTHQ 238
Query: 286 IRLHCQYLGISIRGDVKYEGV------------YEWNGKRYDGHE-LHAESLSFDHPVTG 332
IR+H Q+LG SI GD Y G + N + LHA++L F P TG
Sbjct: 239 IRVHLQHLGHSILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFRQPTTG 298
Query: 333 CPVMVQAPLP 342
P+ APLP
Sbjct: 299 EPLSFSAPLP 308
>sp|Q8PHN2|RLUD_XANAC Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1
Length = 331
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 111/273 (40%), Gaps = 72/273 (26%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLAS-----VPCLLAGDSAESKSGRLSEGTKLNLLELHL 140
VLYEDE ++ ++KP G+ + V LL D A + R +
Sbjct: 92 VLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALASVPRAG-----------V 140
Query: 141 ANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITI-ISGHGR 199
+RLD+DTSGVMV+ ++ + + LV+ + +V + Y+A+ +G I H R
Sbjct: 141 VHRLDKDTSGVMVVARTVQAQTALVEQLSAREVHRQYLAVVVGALVSGGTANAPIDRHPR 200
Query: 200 SKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEK 259
+ A D GR D VT + L+E + +E
Sbjct: 201 DRLK----MAVRDDGR---------DAVTHYR---------------LRERFRAHTALEC 232
Query: 260 KAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDG--H 317
+ +GRTHQIR+H +L I GD Y G + D H
Sbjct: 233 RL-----------------ETGRTHQIRVHMAHLKSPIVGDPLYGGALKLPKGATDELVH 275
Query: 318 EL--------HAESLSFDHPVTGCPVMVQAPLP 342
EL HAE+L F HPV+G PV AP+P
Sbjct: 276 ELRTFKRQALHAETLEFLHPVSGEPVRASAPVP 308
>sp|P0AA40|RLUC_SHIFL Ribosomal large subunit pseudouridine synthase C OS=Shigella
flexneri GN=rluC PE=3 SV=1
Length = 319
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 113/263 (42%), Gaps = 60/263 (22%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
+LYED+ ++ +NKP G ++ G A R L L +RLD
Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF----------LELVHRLD 144
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSGV+++ K L + + + K Y+AL G W
Sbjct: 145 RDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV--------------------RGQW 184
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFE-VLSVNGEGSFKEPSELQEHEENNIVVEKKAVLD 264
+ + S ++++++ S E ++ V+ EG +PSE VE++
Sbjct: 185 QSHVKS------VQAPLLKNILQSGERIVRVSQEG---KPSE------TRFKVEERYAFA 229
Query: 265 ADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWN------GKRYDGHE 318
LVR P +GRTHQIR+H QY G I D +Y G E++ G +
Sbjct: 230 T-------LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY-GDREFDRQLTEAGTGLNRLF 281
Query: 319 LHAESLSFDHPVTGCPVMVQAPL 341
LHA +L F HP TG + ++AP+
Sbjct: 282 LHAAALKFTHPGTGEVMRIEAPM 304
>sp|P0AA39|RLUC_ECOLI Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli (strain K12) GN=rluC PE=1 SV=1
Length = 319
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 113/263 (42%), Gaps = 60/263 (22%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
+LYED+ ++ +NKP G ++ G A R L L +RLD
Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF----------LELVHRLD 144
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSGV+++ K L + + + K Y+AL G W
Sbjct: 145 RDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV--------------------RGQW 184
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFE-VLSVNGEGSFKEPSELQEHEENNIVVEKKAVLD 264
+ + S ++++++ S E ++ V+ EG +PSE VE++
Sbjct: 185 QSHVKS------VQAPLLKNILQSGERIVRVSQEG---KPSE------TRFKVEERYAFA 229
Query: 265 ADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWN------GKRYDGHE 318
LVR P +GRTHQIR+H QY G I D +Y G E++ G +
Sbjct: 230 T-------LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY-GDREFDRQLTEAGTGLNRLF 281
Query: 319 LHAESLSFDHPVTGCPVMVQAPL 341
LHA +L F HP TG + ++AP+
Sbjct: 282 LHAAALKFTHPGTGEVMRIEAPM 304
>sp|Q8X8J3|RLUC_ECO57 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O157:H7 GN=rluC PE=3 SV=1
Length = 319
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 113/263 (42%), Gaps = 60/263 (22%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
+LYED+ ++ +NKP G ++ G A R L L +RLD
Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF----------LELVHRLD 144
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSGV+++ K L + + + K Y+AL G W
Sbjct: 145 RDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV--------------------RGQW 184
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFE-VLSVNGEGSFKEPSELQEHEENNIVVEKKAVLD 264
+ + S ++++++ S E ++ V+ EG +PSE VE++
Sbjct: 185 QSHVKS------VQAPLLKNILQSGERIVRVSQEG---KPSE------TRFKVEERYAFA 229
Query: 265 ADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWN------GKRYDGHE 318
LVR P +GRTHQIR+H QY G I D +Y G E++ G +
Sbjct: 230 T-------LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY-GDREFDRQLTEAGTGLNRLF 281
Query: 319 LHAESLSFDHPVTGCPVMVQAPL 341
LHA +L F HP TG + ++AP+
Sbjct: 282 LHAAALKFTHPGTGEVMRIEAPM 304
>sp|Q1RJX7|RLUC_RICBR Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
bellii (strain RML369-C) GN=rluC PE=3 SV=1
Length = 301
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 126/296 (42%), Gaps = 61/296 (20%)
Query: 49 YPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGVYCESVL 108
+ P++ P + D E+T A K++ ++YED+ ++A+NKP G+ +
Sbjct: 63 FNLPIAQPTKLVFTDAEITLAK---------KITTEYLIYEDDNIIAINKPAGLATQ--- 110
Query: 109 ASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAF 168
L+ DSA S+G + L +RLD++TSG+++I K++ + KL AF
Sbjct: 111 GGSKINLSVDSALKYLN--SQGA-----DFKLVHRLDKETSGLLLIAKNYVSSVKLHDAF 163
Query: 169 TDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVT 228
+ V KTY+A+ G K D G V T
Sbjct: 164 KEKLVEKTYLAVTYGKPIK------------------------DQGEV----------KT 189
Query: 229 SFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRL 288
+ E +GS + +++ ++ + K L N LV P +GR HQ+RL
Sbjct: 190 NIE----KSKGSIPKITDINDNNGKLAITYYK--LLKSLTNNLFLVEFIPITGRMHQLRL 243
Query: 289 HCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLW 344
H + LG I GD KY +Y LHA ++ V G V ++A LP +
Sbjct: 244 HAKLLGCPIFGDNKYGNDKLMPYSKY--MFLHANNIVLSKKVFGKEVNLEAKLPSY 297
>sp|Q8Z7J7|RLUC_SALTI Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhi GN=rluC PE=3 SV=1
Length = 319
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 113/263 (42%), Gaps = 60/263 (22%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
+LYED+ ++ +NKP G ++ G A R L L +RLD
Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF----------LELVHRLD 144
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSGV+++ K L + + + K Y+AL G W
Sbjct: 145 RDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV--------------------RGQW 184
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFE-VLSVNGEGSFKEPSELQEHEENNIVVEKKAVLD 264
+ + + ++++++ S E ++ V+ EG +PSE VE++
Sbjct: 185 QSHVKT------VQAPLLKNILQSGERIVRVSQEG---KPSE------TRFKVEERYAFA 229
Query: 265 ADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHE------ 318
LVR P +GRTHQIR+H QY G I D +Y G E++ + +
Sbjct: 230 T-------LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY-GDREFDQQLTEAGTGLKRLF 281
Query: 319 LHAESLSFDHPVTGCPVMVQAPL 341
LHA +L F HP TG + ++AP+
Sbjct: 282 LHAAALKFTHPGTGDVMRIEAPM 304
>sp|Q8DEV0|RLUD_VIBVU Ribosomal large subunit pseudouridine synthase D OS=Vibrio
vulnificus (strain CMCP6) GN=rluD PE=3 SV=1
Length = 325
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 111/279 (39%), Gaps = 82/279 (29%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELH----- 139
D++YED+ ++ +NKP+ A P +GT LN L H
Sbjct: 85 DIVYEDDDILVINKPRDFVVHPG-AGTP----------------DGTVLNALLFHCPEVA 127
Query: 140 ------LANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITI 193
+ +RLD+DT+G+MV+ K+ ++LV+A +++ Y A+ IG ++
Sbjct: 128 EVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRNITREYEAIAIGRMTAGGKVDK 187
Query: 194 ISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEEN 253
G +K + A S +G+ P VT F V +EH
Sbjct: 188 PIGRHATK---RTLMAVSPMGK--PA-------VTHFRV-----------AEHFREHTRI 224
Query: 254 NIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNG-- 311
+ +E +GRTHQIR+H YL + GD Y G
Sbjct: 225 RLRLE---------------------TGRTHQIRVHMSYLQHPLLGDAAYGGRARIPAGA 263
Query: 312 --------KRYDGHELHAESLSFDHPVTGCPVMVQAPLP 342
+ +D LHA L F+HP+TG + AP+P
Sbjct: 264 SEDVTAMIRNFDRQALHAVMLRFEHPITGEEMEFHAPVP 302
>sp|O31613|YJBO_BACSU Uncharacterized RNA pseudouridine synthase YjbO OS=Bacillus
subtilis (strain 168) GN=yjbO PE=3 SV=1
Length = 283
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 115/265 (43%), Gaps = 67/265 (25%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEG------TKLNLLEL 138
D+LYEDE ++ +NK + ++S+P S E SG ++ G T +
Sbjct: 67 DILYEDEHVLVINK------QPYVSSIP------SREHPSGSIANGIIDHYQTTGVRATV 114
Query: 139 HLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHG 198
HL RLDRDTSG+M++ K S L A + V + Y A+ G R+ + G
Sbjct: 115 HLVTRLDRDTSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHG------RMAQMEGTV 168
Query: 199 RSKFGAWRVYAASDVGR-VLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVV 257
+ G + S + R V P G + VT F V N +
Sbjct: 169 DAPIGR---HPDSIIERTVTPDG---QKAVTHFYVTCANDD------------------- 203
Query: 258 EKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGH 317
+ + A + E +GRTHQIR+H YLG + GD Y G + G++
Sbjct: 204 -----MTSVALQLE--------TGRTHQIRVHMSYLGHPLCGDTLYGGTRQEIGRQ---- 246
Query: 318 ELHAESLSFDHPVTGCPVMVQAPLP 342
LH+E LSF HP+T + APLP
Sbjct: 247 ALHSEHLSFIHPLTQENMRFHAPLP 271
>sp|Q8ZQ16|RLUC_SALTY Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluC PE=3 SV=1
Length = 319
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 115/263 (43%), Gaps = 60/263 (22%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
+LYED+ ++ +NKP G ++ G A R L L +RLD
Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF----------LELVHRLD 144
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSGV+++ K L + + + K Y+AL G +W+
Sbjct: 145 RDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG---QWQ---------------- 185
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFE-VLSVNGEGSFKEPSELQEHEENNIVVEKKAVLD 264
S V V ++++++ S E ++ V+ EG +PSE VE++
Sbjct: 186 -----SHVKTV--QAPLLKNILQSGERIVRVSQEG---KPSE------TRFKVEERYAFA 229
Query: 265 ADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHE------ 318
LVR P +GRTHQIR+H QY G I D +Y G E++ + +
Sbjct: 230 T-------LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY-GDREFDQQLTEAGTGLKRLF 281
Query: 319 LHAESLSFDHPVTGCPVMVQAPL 341
LHA +L F HP TG + ++AP+
Sbjct: 282 LHAAALKFTHPGTGEVMRIEAPM 304
>sp|Q68XB2|RLUC_RICTY Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=rluC PE=3
SV=1
Length = 303
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 54/265 (20%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
++YED+ L+A+NKP + + L+ DSA +G + L +RLD
Sbjct: 91 LIYEDDHLIAINKPASLATQ---GGSKINLSIDSALKYLN--YQGA-----DFKLVHRLD 140
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
++TSG+++I K++ + KL AF + V K Y A+ G K I + S G+SK
Sbjct: 141 KETSGLLLIAKNYLSSVKLHDAFKEKLVIKKYFAITYGRPVKNVGI-VKSNIGKSK---G 196
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFEVL-SVNGEGSFKEPSELQEHEENNIVVEKKAVLD 264
R++ +D+ G + +T +++L S+N
Sbjct: 197 RMFKITDIDS--DNGKLA---ITYYKLLKSLNN--------------------------- 224
Query: 265 ADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESL 324
N L+ P +GR HQ+RLH Q LG I GD KY +Y LHA ++
Sbjct: 225 -----NLFLIEFMPVTGRMHQLRLHAQLLGCPILGDDKYGNKEVMPYSKY--MFLHANNI 277
Query: 325 SFDHPVTGCPVMVQAPLPLWGTEAL 349
+ G + ++A LP + T L
Sbjct: 278 YLSESIVGKEIKLEAKLPFYFTRRL 302
>sp|P33640|RLUD_PSEAE Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluD PE=3 SV=2
Length = 320
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 112/285 (39%), Gaps = 87/285 (30%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELH----- 139
+++YEDE ++ ++KP G+ AG +GT LN L H
Sbjct: 84 EIVYEDEHILVIDKPAGLVVHPA--------AGHQ---------DGTLLNALLYHVPDIA 126
Query: 140 ------LANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITI 193
+ +RLD+DT+G+MV+ K+ + +KLV VS+ Y A+ IG I
Sbjct: 127 NVPRAGIVHRLDKDTTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVITSGGTIDA 186
Query: 194 -ISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEE 252
I HG + + A D G+V V+ + VL + H
Sbjct: 187 PIGRHGVQR----QKMAVVDAGKV---------AVSHYRVL-----------ERFRAHTH 222
Query: 253 NNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYE---- 308
+ +E +GRTHQIR+H ++G + GD Y G +
Sbjct: 223 TRVKLE---------------------TGRTHQIRVHMSHIGYPLVGDPVYGGRFRIPPV 261
Query: 309 ------WNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLP---LW 344
+ + LHA L DHP TG + ++PLP LW
Sbjct: 262 ASQTLVQTLREFPRQALHARFLELDHPATGVRMKWESPLPEDFLW 306
>sp|Q8K9J8|RLUC_BUCAP Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluC PE=3 SV=1
Length = 314
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 125/278 (44%), Gaps = 67/278 (24%)
Query: 84 SDVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLE--LHLA 141
+++LYED +L+ +NKP G+ G S + G + K+ LE L L
Sbjct: 92 NNILYEDNYLLIINKPSGIAVH-----------GGSGIN-LGVIEYFRKIRPLEKFLELV 139
Query: 142 NRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAP-KWKRIT--IISGHG 198
+R+DRDTSGV+++ K + L K + KV K YIAL G P ++++ ++ H
Sbjct: 140 HRIDRDTSGVLMLAKKRRSLLSLHKQIREKKVQKKYIALVHGLWPLSLRKVSEPLLKTHL 199
Query: 199 RSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVE 258
++K ++L +N EG +P+ E ++
Sbjct: 200 KNK---------------------------QRKIL-INKEG---KPA------ETYFKIK 222
Query: 259 KKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEW-----NGKR 313
K+ + LV P++GRTHQIR+H + G I D +Y G + N +
Sbjct: 223 KQYLFTT-------LVSITPKTGRTHQIRVHTLHAGHPILFDKRY-GKRDLDCNIKNKTK 274
Query: 314 YDGHELHAESLSFDHPVTGCPVMVQAPLPLWGTEALQS 351
+ LHA S++F HP TG + + APL ++ L +
Sbjct: 275 INRLLLHATSINFIHPETGKKMHIVAPLDVYFKNYLNT 312
>sp|P43930|Y042_HAEIN Uncharacterized RNA pseudouridine synthase HI_0042 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_0042 PE=3 SV=1
Length = 224
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 66/247 (26%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRL 144
+V+Y+ + +NK +G+ D E L +LN+ ++ L +RL
Sbjct: 4 EVVYQHSDFIIINKSEGISVHK-----------DQEEQGLTELV-AKQLNVPKVWLVHRL 51
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGA 204
D+ TSG++++ + + A++ + F++HK+ KTY+AL PK K+ II +++ GA
Sbjct: 52 DKVTSGLLILALNAESAAEFSRLFSEHKIHKTYLALS-NQKPKKKQGLIIGDMKKAREGA 110
Query: 205 WRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLD 264
W++ D +T FE +S EP+
Sbjct: 111 WKLCQTKD-----------NPAITRFESVSC-------EPN------------------- 133
Query: 265 ADAKKNEILVRAF---PRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHA 321
+R F P++G+THQ+R+ + LG I GD G+Y N ++ D LHA
Sbjct: 134 ---------LRLFILKPQTGKTHQLRVAMKSLGSPILGD----GLYGKNTEKIDRTYLHA 180
Query: 322 ESLSFDH 328
L FD+
Sbjct: 181 TQLEFDY 187
>sp|Q9CM51|RLUC_PASMU Ribosomal large subunit pseudouridine synthase C OS=Pasteurella
multocida (strain Pm70) GN=rluC PE=3 SV=1
Length = 326
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 109/265 (41%), Gaps = 66/265 (24%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
+L+EDE L+ +NKP G+ ++ R L L +RLD
Sbjct: 101 ILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDARF----------LELVHRLD 150
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSG++++ K L + + V K Y+AL G W
Sbjct: 151 RDTSGILLVAKKRSALRSLHEQLREKTVQKDYLALV--------------------RGQW 190
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDA 265
+ + +V+ + ++ + ++ V+ +G +PSE +E++
Sbjct: 191 QSHC-----KVVKAPLLKNELSSGERIVRVSEQG---KPSE------TRFSIEERY---- 232
Query: 266 DAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHE------- 318
+ LV+A P +GRTHQIR+H QY G I D KY K +D
Sbjct: 233 ---EYATLVKASPVTGRTHQIRVHTQYAGHPIALDDKY------GDKHFDEQMTQLGLTR 283
Query: 319 --LHAESLSFDHPVTGCPVMVQAPL 341
LHA S+ F+HP TG + + APL
Sbjct: 284 LFLHAFSIRFEHPKTGETLRINAPL 308
>sp|Q8ZFU1|RLUC_YERPE Ribosomal large subunit pseudouridine synthase C OS=Yersinia pestis
GN=rluC PE=3 SV=1
Length = 320
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 113/261 (43%), Gaps = 58/261 (22%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
+L+ED++L+ +NKP G ++ G A R L L +RLD
Sbjct: 95 ILFEDDYLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF----------LELVHRLD 144
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSGV+++ K L + + K Y+AL G W
Sbjct: 145 RDTSGVLLVAKKRSALRSLHEQLRLKSMQKDYLALV--------------------RGQW 184
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFE-VLSVNGEGSFKEPSELQEHEENNIVVEKKAVLD 264
+ + + ++++++ S E V+ V+ EG +PSE + E
Sbjct: 185 QSHCKA------IQAPLLKNIMQSGERVVKVSSEG---KPSETRFKIEERF--------- 226
Query: 265 ADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWN----GKRYDGHELH 320
++ LV+A P +GRTHQIR+H + G I D +Y G E++ G LH
Sbjct: 227 ----EHATLVKASPVTGRTHQIRVHALHAGHPIAFDDRY-GYREFDQQLQGTGLHRLFLH 281
Query: 321 AESLSFDHPVTGCPVMVQAPL 341
A +L F+HP TG + ++APL
Sbjct: 282 AAALRFEHPNTGETMRIEAPL 302
>sp|P59835|RLUC_HAEDU Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluC PE=3 SV=1
Length = 320
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 54/259 (20%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
+LYED+ ++ +NKP G+ ++ A R L L +R+D
Sbjct: 98 ILYEDDVMLVLNKPSGIGVHGGSGLSFGVIEALRALRPQARF----------LELVHRID 147
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSG++++ K L + + V K Y+AL G W
Sbjct: 148 RDTSGILLVAKKRSALRALHEQLREKVVQKDYLALV--------------------RGQW 187
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDA 265
+ + V+ + ++ + ++ V+ +G +PSE +E++
Sbjct: 188 QAHI-----NVIKAPLLKNELQSGERIVKVSEQG---KPSE------TRFSIEERY---- 229
Query: 266 DAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY-EGVYEWNGKRYDGHE--LHAE 322
N L++A P +GRTHQIR+H QY G I D +Y + ++ K+ + LHA
Sbjct: 230 ---PNATLIKASPITGRTHQIRVHTQYAGHPIACDDRYGDQAFDAKLKQAGLNRLFLHAH 286
Query: 323 SLSFDHPVTGCPVMVQAPL 341
S+ F+HP T + + APL
Sbjct: 287 SIRFEHPKTAEQMFITAPL 305
>sp|Q87S65|RLUD_VIBPA Ribosomal large subunit pseudouridine synthase D OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluD PE=3 SV=1
Length = 325
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 118/294 (40%), Gaps = 85/294 (28%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELH----- 139
D++YED+ ++ +NKP+ A P +GT LN L H
Sbjct: 85 DIVYEDDDIIVINKPRDFVVHPG-AGTP----------------DGTVLNALLHHYPDIA 127
Query: 140 ------LANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITI 193
+ +RLD+DT+G+MV+ K+ ++LV+A +++ Y A+ IG ++
Sbjct: 128 EVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRNITREYEAIAIGRMTAGGKVDQ 187
Query: 194 ISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEEN 253
G +K R A V P G + VT + V +EH
Sbjct: 188 PIGRHSTK----RTLMA-----VAPLG---KPAVTHYRV-----------AEHFREHTRI 224
Query: 254 NIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNG-- 311
+ +E +GRTHQIR+H YL + GD Y G
Sbjct: 225 RLRLE---------------------TGRTHQIRVHMSYLQHPLLGDTAYGGRARIPTGA 263
Query: 312 --------KRYDGHELHAESLSFDHPVTGCPVMVQAPLP---LWGTEALQSSSK 354
+ +D LHA L F+HP+TG + AP+P + TEAL+ ++
Sbjct: 264 SQELTDMIRGFDRQALHAVMLRFEHPITGEELEFHAPVPDDMVAMTEALRKDTE 317
>sp|Q8P682|RLUD_XANCP Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rluD PE=3 SV=1
Length = 331
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 113/279 (40%), Gaps = 82/279 (29%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLAS-----VPCLLAGD---SAESKSGRLSEGTKLNLL 136
+VLYED+ ++ ++KP G+ + V LL D +A ++G
Sbjct: 91 NVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAAVPRAG----------- 139
Query: 137 ELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITI-IS 195
+ +RLD+DTSGVMV+ ++ + + LV+ + V + Y+A+ +G I
Sbjct: 140 ---VVHRLDKDTSGVMVVARTLQAQTALVEQLSARDVHRQYLAVVVGALVSGGTADAPID 196
Query: 196 GHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNI 255
H R + A D GR D VT + L+E +
Sbjct: 197 RHPRDRLK----MAVRDDGR---------DAVTHYR---------------LRERFRAHT 228
Query: 256 VVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEG---------- 305
+E + +GRTHQIR+H +L I GD Y G
Sbjct: 229 ALECRL-----------------ETGRTHQIRVHMAHLKSPIVGDPLYGGALKLPKGATD 271
Query: 306 --VYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLP 342
V E G + LHAE+L F HPV+G P+ AP+P
Sbjct: 272 TLVAELRG--FKRQALHAETLEFLHPVSGEPIRASAPVP 308
>sp|P54604|YHCT_BACSU Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus
subtilis (strain 168) GN=yhcT PE=3 SV=2
Length = 302
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 116/270 (42%), Gaps = 75/270 (27%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHL---- 140
D+L+ED ++ +NKP G+ A+ P + + ++G L+ NL+ H
Sbjct: 84 DILFEDNHMLIINKPAGI------ATHP------NEDGQTGTLA-----NLIAYHYQING 126
Query: 141 -------ANRLDRDTSGVMVITKSHKVASKLVKAFTDHK-VSKTYIALCIGPAPKWKRIT 192
+RLD+DTSG +V K H++A ++ + K + +TY A+ G + K+ T
Sbjct: 127 ETCKVRHVHRLDQDTSGAIVFAK-HRLAHAILDQQLEKKTLKRTYTAIAEGKL-RTKKGT 184
Query: 193 IISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEE 252
I S GR + R RV PGG VT F+V++ N
Sbjct: 185 INSPIGRDRSHPTR-------RRVSPGGQTA---VTHFKVMASN---------------- 218
Query: 253 NNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGK 312
AK+ LV +GRTHQIR+H LG + GD Y G K
Sbjct: 219 --------------AKERLSLVELELETGRTHQIRVHLASLGHPLTGDSLYGG----GSK 260
Query: 313 RYDGHELHAESLSFDHPVTGCPVMVQAPLP 342
+ LHA + HP+T ++ +AP P
Sbjct: 261 LLNRQALHANKVQAVHPITDELIVAEAPFP 290
>sp|Q9PET9|RLUD_XYLFA Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain 9a5c) GN=rluD PE=3 SV=1
Length = 331
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 111/276 (40%), Gaps = 76/276 (27%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLAS-----VPCLLAGDSAESKSGRLSEGTKLNLLELH 139
D+LYEDE + +NKP G+ + V LL D A + R
Sbjct: 91 DILYEDEHVFVLNKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAG----------- 139
Query: 140 LANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRIT-IISGHG 198
+ +RLD+DTSGVMV+ ++ + + LV+ + +V + Y+A+ + + I H
Sbjct: 140 VVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHP 199
Query: 199 RSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVE 258
R + A SD G ++ VT + L+E + +E
Sbjct: 200 RDRLR----MAVSDTG---------KEAVTHY---------------RLRERFRAHTALE 231
Query: 259 KKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEG------------V 306
+ LD +GRTHQIR+H +L I GD Y G V
Sbjct: 232 CR--LD---------------TGRTHQIRVHMAHLRHPIVGDRLYGGSLKLPKVGTDALV 274
Query: 307 YEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLP 342
G + LHAE L F HPV PV + AP+P
Sbjct: 275 VMLRG--FKRQALHAEVLEFLHPVGALPVRIVAPVP 308
>sp|P44433|RLUC_HAEIN Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluC PE=3 SV=1
Length = 322
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 110/261 (42%), Gaps = 54/261 (20%)
Query: 84 SDVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANR 143
+ +L+ED+ L+ +NKP G+ ++ A R L L +R
Sbjct: 98 NQILFEDDCLIILNKPSGIAVHGGSGLNFGVIEALRALRPEARF----------LELVHR 147
Query: 144 LDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFG 203
LDRDTSG+++I K L + V K Y+AL G +W+
Sbjct: 148 LDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVRG---QWQ-------------S 191
Query: 204 AWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVL 263
+V AS + L G ++ V+ +G +PSE + +E++ +
Sbjct: 192 HIKVIQASLLKNELSSGE---------RIVRVSEQG---KPSETR------FSIEERYI- 232
Query: 264 DADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY---EGVYEWNGKRYDGHELH 320
N LV+A P +GRTHQIR+H QY G I D KY + + N + LH
Sbjct: 233 ------NATLVKASPVTGRTHQIRVHTQYAGHPIALDDKYGDKDFDKQMNELGLNRLFLH 286
Query: 321 AESLSFDHPVTGCPVMVQAPL 341
A S+ F+HP G + A L
Sbjct: 287 AFSIRFEHPKNGETLRFNASL 307
>sp|Q9ZDR7|RLUC_RICPR Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
prowazekii (strain Madrid E) GN=rluC PE=3 SV=1
Length = 303
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 56/266 (21%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
++YED+ L+A+NKP + + L+ DSA +G + L +RLD
Sbjct: 91 LIYEDDHLIAINKPASLATQ---GGSKINLSIDSALKYLN--YQGA-----DFKLVHRLD 140
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
++TSG+++I K++ + KL AF + V K Y A+ G P T+ S G+SK
Sbjct: 141 KETSGLLLIAKNYLSSVKLHNAFKEKLVIKKYFAITYG-RPVKNVGTVKSNIGKSKRRLS 199
Query: 206 RVYAA-SDVGRVLPGGSVVRDMVTSFEVL-SVNGEGSFKEPSELQEHEENNIVVEKKAVL 263
++ SD G++ +T +++L S+N
Sbjct: 200 KIANIDSDDGKL---------AITYYKLLKSLNN-------------------------- 224
Query: 264 DADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAES 323
N L+ P +GR HQ+RLH Q LG I GD KY +Y LHA +
Sbjct: 225 ------NLFLIEFMPVTGRMHQLRLHAQLLGCPILGDDKYGNKEIMPYSKY--MFLHANN 276
Query: 324 LSFDHPVTGCPVMVQAPLPLWGTEAL 349
+ + G + ++A LP + T +
Sbjct: 277 IYLSETIVGKEIKLEAKLPFYFTRRI 302
>sp|Q9KQH0|RLUC_VIBCH Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluC PE=3 SV=1
Length = 315
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 112/273 (41%), Gaps = 69/273 (25%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
++YED+ L+ +NKP G + G + + L L +R+D
Sbjct: 97 IVYEDDHLLILNKPSGT----------AVHGGSGLHFGAIEALRALRPQARFLELVHRID 146
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSG++++ K L F + V K Y AL +G W
Sbjct: 147 RDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMG---HW----------------- 186
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDA 265
D + ++++ V S ++ VN G +PSE + ++EK A
Sbjct: 187 ------DAECKVVNAPLLKNEVNS--IVRVNPNG---KPSETRFR-----ILEKFA---- 226
Query: 266 DAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHE------- 318
LV+A P +GRTHQIR+H QY+G I D +Y +R+D +
Sbjct: 227 ----EATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRY------GDRRFDAYTAQFGIER 276
Query: 319 --LHAESLSFDHPVTGCPVMVQAPLPLWGTEAL 349
LHA ++ F HP + + + APL +AL
Sbjct: 277 LFLHAANIQFVHPASEKKLEIHAPLEAHLEQAL 309
>sp|Q87AR7|RLUD_XYLFT Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rluD PE=3
SV=1
Length = 331
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 109/274 (39%), Gaps = 72/274 (26%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLAS-----VPCLLAGDSAESKSGRLSEGTKLNLLELH 139
D+LYEDE + +NKP G+ + V LL D A + R
Sbjct: 91 DILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAG----------- 139
Query: 140 LANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRIT-IISGHG 198
+ +RLD+DTSGVMV+ ++ + + LV+ + +V + Y+A+ + + I H
Sbjct: 140 VVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHP 199
Query: 199 RSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVE 258
R + SD G ++ VT + L+E + +E
Sbjct: 200 RDRLR----MEVSDTG---------KEAVTHY---------------RLRERFRAHTALE 231
Query: 259 KKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDG-- 316
+ LD +GRTHQIR+H +L I GD Y G + D
Sbjct: 232 CR--LD---------------TGRTHQIRVHMAHLRHPIVGDRLYGGSLKLPKGGTDALV 274
Query: 317 --------HELHAESLSFDHPVTGCPVMVQAPLP 342
LHAE L F HPV PV + AP+P
Sbjct: 275 AMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVP 308
>sp|Q8X6T6|TRUC_ECO57 tRNA pseudouridine synthase C OS=Escherichia coli O157:H7 GN=truC
PE=3 SV=1
Length = 260
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 107/264 (40%), Gaps = 50/264 (18%)
Query: 85 DVLYEDEWLVAVNKPQG-VYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANR 143
++LY+DEWLVAVNKP G + S L ++ + + G+ + A+R
Sbjct: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ----------HVFTAHR 52
Query: 144 LDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFG 203
LDR TSGV+++ S + L + F H++ K Y A+ G
Sbjct: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-------------------- 92
Query: 204 AWRVYAASDVGRVLPGGSVVRD--MVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKA 261
W + A V D +V + ++ K P H VE
Sbjct: 93 -WLMEEA------------VLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPV 139
Query: 262 VLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYE-WNGKRYDGHE-- 318
LV P++GR HQ+R H +L I GD K+ + + +G + G +
Sbjct: 140 ATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRL 199
Query: 319 -LHAESLSFDHPVTGCPVMVQAPL 341
LHA LS HP TG P+ + A L
Sbjct: 200 MLHASQLSLTHPFTGEPLTIHAGL 223
>sp|P0AA42|TRUC_SHIFL tRNA pseudouridine synthase C OS=Shigella flexneri GN=truC PE=3
SV=1
Length = 260
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 107/264 (40%), Gaps = 50/264 (18%)
Query: 85 DVLYEDEWLVAVNKPQG-VYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANR 143
++LY+DEWLVAVNKP G + S L ++ + + G+ + A+R
Sbjct: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ----------HVFTAHR 52
Query: 144 LDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFG 203
LDR TSGV+++ S + L + F H++ K Y A+ G
Sbjct: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-------------------- 92
Query: 204 AWRVYAASDVGRVLPGGSVVRD--MVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKA 261
W + A V D +V + ++ K P H VE
Sbjct: 93 -WLMEEA------------VLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPV 139
Query: 262 VLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYE-WNGKRYDGHE-- 318
LV P++GR HQ+R H +L I GD K+ + + +G + G +
Sbjct: 140 ATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRL 199
Query: 319 -LHAESLSFDHPVTGCPVMVQAPL 341
LHA LS HP TG P+ + A L
Sbjct: 200 MLHASQLSLTHPFTGEPLTIHAGL 223
>sp|P0AA41|TRUC_ECOLI tRNA pseudouridine synthase C OS=Escherichia coli (strain K12)
GN=truC PE=1 SV=1
Length = 260
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 107/264 (40%), Gaps = 50/264 (18%)
Query: 85 DVLYEDEWLVAVNKPQG-VYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANR 143
++LY+DEWLVAVNKP G + S L ++ + + G+ + A+R
Sbjct: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ----------HVFTAHR 52
Query: 144 LDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFG 203
LDR TSGV+++ S + L + F H++ K Y A+ G
Sbjct: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-------------------- 92
Query: 204 AWRVYAASDVGRVLPGGSVVRD--MVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKA 261
W + A V D +V + ++ K P H VE
Sbjct: 93 -WLMEEA------------VLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPV 139
Query: 262 VLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYE-WNGKRYDGHE-- 318
LV P++GR HQ+R H +L I GD K+ + + +G + G +
Sbjct: 140 ATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRL 199
Query: 319 -LHAESLSFDHPVTGCPVMVQAPL 341
LHA LS HP TG P+ + A L
Sbjct: 200 MLHASQLSLTHPFTGEPLTIHAGL 223
>sp|Q9KU20|RLUD_VIBCH Ribosomal large subunit pseudouridine synthase D OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluD PE=3 SV=1
Length = 324
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 110/279 (39%), Gaps = 82/279 (29%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELH----- 139
+++YED+ ++ +NKP+ D ++ T LN L H
Sbjct: 85 NIVYEDDDIIVINKPR-----------------DFVVHPGAGQADKTVLNALLFHYSPIA 127
Query: 140 ------LANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITI 193
+ +RLD+DT+G+MV+ K+ ++LV+A V++ Y A+ IG T+
Sbjct: 128 EVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIG--------TM 179
Query: 194 ISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEEN 253
+G G R + V P G + VT + V F+E + L
Sbjct: 180 TAG-GMIDKPIGRHSTKRTLMSVSPMG---KHAVTHYRVAE-----HFREHTRL------ 224
Query: 254 NIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEG-------- 305
R +GRTHQIR+H YL + GD Y G
Sbjct: 225 ---------------------RLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRARIPKGA 263
Query: 306 VYEWNG--KRYDGHELHAESLSFDHPVTGCPVMVQAPLP 342
E + +D LHA L F+HPVTG + AP+P
Sbjct: 264 TEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
>sp|Q9KTL4|TRUC_VIBCH tRNA pseudouridine synthase C OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=truC PE=3
SV=1
Length = 244
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 111/269 (41%), Gaps = 60/269 (22%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRL 144
+++Y+DE+LVAVNKP G+ L E L + ++ LH RL
Sbjct: 3 EIVYQDEYLVAVNKPAGMLVHR------SWLDKHETEFVMQTLRDQIGQHVFPLH---RL 53
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG--------PAPKWKRITIISG 196
DR TSGV+V S ++AS+++ F +H++ KTY A+ G P + + I+
Sbjct: 54 DRPTSGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEANVLDYPLKEELDKIA- 112
Query: 197 HGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIV 256
KF A S V P V + T G F
Sbjct: 113 ---DKFAKQDKEAQSAVTAYRPLAKVELPIAT----------GKF--------------- 144
Query: 257 VEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY-EGVYEWNGKRYD 315
A L+ P++GR HQ+R H +L I GD + +GV+ + +
Sbjct: 145 ----------ATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTHGDGVHNRLFREHF 194
Query: 316 GHE---LHAESLSFDHPVTGCPVMVQAPL 341
+ LHA L F HP T P++++A L
Sbjct: 195 SAQRLMLHASELRFMHPYTQQPLVIRAGL 223
>sp|Q45826|Y901_CHLAA Uncharacterized RNA pseudouridine synthase Caur_0901
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=Caur_0901 PE=3 SV=2
Length = 316
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 105/267 (39%), Gaps = 68/267 (25%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLAS-----VPCLLAGDSAESKSGRLSEGTKLNLLELH 139
DV+YED + +NKP G+ V LLA + G L G
Sbjct: 92 DVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLAIGGELRPG--------- 142
Query: 140 LANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGR 199
+ +RLDRDTSG++VI + + LV ++ K Y AL IG P+ TI + GR
Sbjct: 143 IVHRLDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPPETG--TIDAPIGR 200
Query: 200 SKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEK 259
R+ V+P G R T + +L G+ S E +L+
Sbjct: 201 DPRDRLRMA-------VVPDGRPAR---THYRLLDTFGDYSLLE-VQLE----------- 238
Query: 260 KAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHE- 318
+GRTHQIR+H ++LG I GD Y +R H
Sbjct: 239 --------------------TGRTHQIRVHLRHLGYPIVGDPVY------GPRRSHLHLS 272
Query: 319 ---LHAESLSFDHPVTGCPVMVQAPLP 342
LHA L HP +G APLP
Sbjct: 273 RQFLHAAYLGLVHPRSGRWQEFTAPLP 299
>sp|Q4UKQ3|RLUC_RICFE Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=rluC PE=3
SV=1
Length = 305
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 61/299 (20%)
Query: 49 YPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGVYCESVL 108
+ P+ P + D E+ A K++ ++YED+ L+A+NKP G+ +
Sbjct: 63 FNLPVKQPEKLVFTDAEIKLAK---------KITTDYLIYEDDNLIAINKPAGLATQ--- 110
Query: 109 ASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAF 168
L+ DSA +G + L +RLD++TSG+++I K++ KL AF
Sbjct: 111 GGSKINLSIDSALKYLNY--KGA-----DFKLVHRLDKETSGLLLIAKNYLSNVKLHDAF 163
Query: 169 TDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVT 228
+ V KTY A+ G K G RS + GS + +T
Sbjct: 164 KEKLVVKTYFAVTYGKPIKN------VGEVRSNIEKSK-------------GSTPK--IT 202
Query: 229 SFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRL 288
++ S NG+ + L+ + N ++E P +GR HQ+RL
Sbjct: 203 --DIYSENGKLAITYYKLLKSLDNNLFLIE-----------------FTPVTGRMHQLRL 243
Query: 289 HCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLWGTE 347
H + LG I GD KY +Y LHA ++ + G + ++A LP + T+
Sbjct: 244 HAKLLGCPIVGDDKYGNKEIMPYSKY--MFLHANNICLSEKIFGKEINLEAKLPFYFTD 300
>sp|Q87N15|RLUC_VIBPA Ribosomal large subunit pseudouridine synthase C OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluC PE=3 SV=1
Length = 315
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 69/265 (26%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLD 145
++YED+ ++ +NKP G + A R L L +R+D
Sbjct: 96 IIYEDDHMLILNKPSGTAVHGGSGLKFGAIEALRALRPQARF----------LELVHRID 145
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAW 205
RDTSG++++ K L F + V K Y AL +G +WK +
Sbjct: 146 RDTSGILLVAKKRSALRHLQAQFREKTVKKFYFALVMG---QWK-------------SSC 189
Query: 206 RVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDA 265
+V A ++++ V S ++ NG+ S L++ E+
Sbjct: 190 KVVNA----------PLLKNEVNSIVRVNPNGKPSETRFKILEKFEQAT----------- 228
Query: 266 DAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHE------- 318
L++A P +GRTHQIR+H QY G I D +Y +R+D +
Sbjct: 229 -------LIQASPITGRTHQIRVHTQYTGHPIAWDDRY------GDRRFDAYTGQLGLDR 275
Query: 319 --LHAESLSFDHPVTGCPVMVQAPL 341
LHA ++ F HP + + AP+
Sbjct: 276 LFLHAANIKFQHPSNDEWMEINAPM 300
>sp|Q5Z8P2|PUS2_ORYSJ RNA pseudourine synthase 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os06g0717400 PE=2 SV=1
Length = 445
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 115/320 (35%), Gaps = 91/320 (28%)
Query: 85 DVLYEDEWLVAVNKP------------QGVYCESVL----ASVPCLLAGDSAESK----- 123
D++YED+ L+ VNKP G ++L S LA +S + +
Sbjct: 141 DIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSIDDECPDSS 200
Query: 124 -------------SGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTD 170
+G +S + L+ + +RLD+ TSG++V+ K ++L + F
Sbjct: 201 DDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 260
Query: 171 HKVSKTYIAL-CIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTS 229
H + + YI+L C P P RI + + RD
Sbjct: 261 HTIRRVYISLTCGAPNPNSGRIEV---------------------------PIARDPNNR 293
Query: 230 FEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLH 289
+++ G G H + V + A LV +GRTHQIR H
Sbjct: 294 IRMIATPGSG----------HRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAH 343
Query: 290 CQYLGISIRGDVKYEGVYEW--------NGKRY-----------DGHELHAESLSFDHPV 330
+YLGI + GD Y G RY D LHA L F HP
Sbjct: 344 AKYLGIPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPH 403
Query: 331 TGCPVMVQAPLPLWGTEALQ 350
+G + P P TE L
Sbjct: 404 SGKILEFSCPPPDDFTEVLN 423
>sp|P0A5T3|Y1567_MYCBO Uncharacterized RNA pseudouridine synthase Mb1567 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1567 PE=3
SV=1
Length = 308
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 111/264 (42%), Gaps = 59/264 (22%)
Query: 86 VLYEDEWLVAVNKPQGVYCE-SVLASVPCLLAGDSAESKSGRLSEGTKLNLLELH----L 140
+LY D+ +VAV+KP V SV + P +L G +A G ++ +H +
Sbjct: 83 ILYSDDDIVAVDKPAAVAAHASVGWTGPTVLGGLAAA--------GYRITTSGVHERQGI 134
Query: 141 ANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRS 200
+RLD TSGVMV+ S + + L +AF V K Y AL G P TI + GR
Sbjct: 135 VHRLDVGTSGVMVVAISERAYTVLKRAFKYRTVDKRYHALVQG-HPDPSSGTIDAPIGRH 193
Query: 201 KFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKK 260
+ W+ +A + G R +T ++ L +F S L H E
Sbjct: 194 RGHEWK-FAITKNG---------RHSLTHYDTLE-----AFVAASLLDVHLE-------- 230
Query: 261 AVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKR--YDGHE 318
+GRTHQIR+H L GD+ Y G KR D
Sbjct: 231 -------------------TGRTHQIRVHFAALHHPCCGDLVY-GADPKLAKRLGLDRQW 270
Query: 319 LHAESLSFDHPVTGCPVMVQAPLP 342
LHA SL+F HP G V + +P P
Sbjct: 271 LHARSLAFAHPADGRRVEIVSPYP 294
>sp|P0A5T2|Y1540_MYCTU Uncharacterized RNA pseudouridine synthase Rv1540/MT1592
OS=Mycobacterium tuberculosis GN=Rv1540 PE=3 SV=1
Length = 308
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 111/264 (42%), Gaps = 59/264 (22%)
Query: 86 VLYEDEWLVAVNKPQGVYCE-SVLASVPCLLAGDSAESKSGRLSEGTKLNLLELH----L 140
+LY D+ +VAV+KP V SV + P +L G +A G ++ +H +
Sbjct: 83 ILYSDDDIVAVDKPAAVAAHASVGWTGPTVLGGLAAA--------GYRITTSGVHERQGI 134
Query: 141 ANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRS 200
+RLD TSGVMV+ S + + L +AF V K Y AL G P TI + GR
Sbjct: 135 VHRLDVGTSGVMVVAISERAYTVLKRAFKYRTVDKRYHALVQG-HPDPSSGTIDAPIGRH 193
Query: 201 KFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKK 260
+ W+ +A + G R +T ++ L +F S L H E
Sbjct: 194 RGHEWK-FAITKNG---------RHSLTHYDTLE-----AFVAASLLDVHLE-------- 230
Query: 261 AVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKR--YDGHE 318
+GRTHQIR+H L GD+ Y G KR D
Sbjct: 231 -------------------TGRTHQIRVHFAALHHPCCGDLVY-GADPKLAKRLGLDRQW 270
Query: 319 LHAESLSFDHPVTGCPVMVQAPLP 342
LHA SL+F HP G V + +P P
Sbjct: 271 LHARSLAFAHPADGRRVEIVSPYP 294
>sp|Q8ZH72|TRUC_YERPE tRNA pseudouridine synthase C OS=Yersinia pestis GN=truC PE=3 SV=1
Length = 257
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 106/263 (40%), Gaps = 52/263 (19%)
Query: 85 DVLYEDEWLVAVNKPQG-VYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANR 143
+++Y+DE +VAVNKP G + S L + + + G+ ++ +R
Sbjct: 3 EIIYQDEHIVAVNKPAGWLVHRSWLDRNETVFVMQTVRDQIGQ----------HVYTVHR 52
Query: 144 LDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFG 203
LDR TSGV+++ S VA L F H++ KTY A+
Sbjct: 53 LDRPTSGVLLMALSSDVARMLSLQFEQHQIQKTYHAVV---------------------- 90
Query: 204 AWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVL 263
G VL GG+V M + ++ S K P H E VE +
Sbjct: 91 ---------RGYVLEGGTVDYAMAEELDKIADKFAKSDKAPQPSVSHYEALAQVEVPLAI 141
Query: 264 DADAKKNEILVRAFPRSGRTHQIRLHCQY-----LGISIRGDVKY-EGVYEWNG-KRYDG 316
LV P +GR HQ+R H + +G S GD++ GV + G R
Sbjct: 142 GRYETARYSLVALKPETGRKHQLRRHMAHIRHPIIGDSTHGDLRQNRGVAQHFGCSRL-- 199
Query: 317 HELHAESLSFDHPVTGCPVMVQA 339
LHA L +HPVTG + + A
Sbjct: 200 -MLHASHLHLNHPVTGEALTLTA 221
>sp|Q92IS6|RLUC_RICCN Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=rluC PE=3
SV=1
Length = 303
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 113/283 (39%), Gaps = 78/283 (27%)
Query: 80 KLSRSDVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNL---- 135
K++ ++Y D+ L+A+NKP G+ + GTK+NL
Sbjct: 85 KITTDYLIYADDNLIAINKPAGLATQG-----------------------GTKINLSIDS 121
Query: 136 ---------LELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAP 186
+ L +RLD+ TSG+++I K++ + KL AF + V KTY A+ G
Sbjct: 122 ALKYLNYKGADFKLVHRLDKKTSGLLLIAKNYLSSVKLHNAFKEKLVVKTYFAVTYGKPI 181
Query: 187 KWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSE 246
K +VG VR + +GS + ++
Sbjct: 182 K------------------------NVGE-------VRSNIEK-------SKGSTPKITD 203
Query: 247 LQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGV 306
+ + E + + VL + N L+ P +GR HQ+RLH + LG I GD KY
Sbjct: 204 I-DSENGKLAITYYKVLKS-LDNNLFLIEFTPVTGRMHQLRLHAKLLGCPILGDDKYGNK 261
Query: 307 YEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLWGTEAL 349
+Y LHA ++ + G ++A LP + T L
Sbjct: 262 EIMPYSKY--MFLHANNICLSEKIFGQESKLEAKLPFYFTRRL 302
>sp|Q87LD3|RLUA_VIBPA Ribosomal large subunit pseudouridine synthase A OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluA PE=3 SV=1
Length = 250
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 84 SDVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANR 143
+D+++ED+ ++AVNKP G L SVP LA + +S RL E ++ + +R
Sbjct: 14 TDIVFEDDHILAVNKPSG------LLSVPGRLA-EHHDSMWSRLQE----EYPDIQVVHR 62
Query: 144 LDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFG 203
LD TSG+MV+ K+ + S L K F K Y A + GH + G
Sbjct: 63 LDMSTSGLMVLAKNKRAESALKKQFQFRLTHKIYYAR-------------VWGHVEQEEG 109
Query: 204 AWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVL 263
+ D P + + FE +G+ S K ++ + EE
Sbjct: 110 EIDLPLICD----WPNRPLQK---VCFE----DGKPS-KTLFQVAKREEQE--------- 148
Query: 264 DADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGH-ELHAE 322
D K I VR P +GR+HQ+R+H Q LG I GD Y K + ELHA
Sbjct: 149 --DGTKTTI-VRLLPITGRSHQLRVHMQALGHPIVGDEFYATE---EAKVFSERLELHAS 202
Query: 323 SLSFDHP 329
LSF HP
Sbjct: 203 ELSFYHP 209
>sp|Q8FEF9|TRUC_ECOL6 tRNA pseudouridine synthase C OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=truC PE=3 SV=1
Length = 260
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 110/264 (41%), Gaps = 50/264 (18%)
Query: 85 DVLYEDEWLVAVNKPQG-VYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANR 143
++LY+DEWLVAVNKP G + S L ++ + + G+ + A+R
Sbjct: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ----------HVFTAHR 52
Query: 144 LDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFG 203
LDR TSGV+++ S + L + F H++ K Y A I+ G
Sbjct: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHA-------------IVRG------- 92
Query: 204 AWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKE--PSELQEHEENNIVVEKKA 261
W + A V D + E+ + + + ++ P H VE
Sbjct: 93 -WLMEEA------------VLDYPLAEELDKIADKFAREDKGPQPAVTHYRGLATVEMPV 139
Query: 262 VLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYE-WNGKRYDGHE-- 318
LV P++GR HQ+R H +L I GD K+ + + +G + G +
Sbjct: 140 ATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRL 199
Query: 319 -LHAESLSFDHPVTGCPVMVQAPL 341
LHA LS HP TG P+ + A L
Sbjct: 200 MLHASQLSLTHPFTGEPLAIHAGL 223
>sp|Q47417|TRUC_PECCC tRNA pseudouridine synthase C OS=Pectobacterium carotovorum subsp.
carotovorum GN=truC PE=3 SV=1
Length = 376
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 106/262 (40%), Gaps = 50/262 (19%)
Query: 85 DVLYEDEWLVAVNKPQG-VYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANR 143
+++Y+DE LVAVNKP G + S L ++ + + G+ ++ +R
Sbjct: 117 EIIYQDEHLVAVNKPSGWLVHRSWLDRKEKVVVMQTVRDQIGQ----------HVYTVHR 166
Query: 144 LDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFG 203
LDR TSGV+++ S +VA L + F H++ KTY A+
Sbjct: 167 LDRPTSGVLLLALSSEVARALSQQFESHQMQKTYHAVV---------------------- 204
Query: 204 AWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVL 263
G VL G + + + ++ K P H + E +
Sbjct: 205 ---------RGYVLDDGVIDYALTEELDKIADKFTNPDKAPQPAVTHYRSLAQAEMPVAI 255
Query: 264 DADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGH------ 317
L+ P++GR HQ+R H ++ I GD + + + + + H
Sbjct: 256 GRYPTARYSLMELKPQTGRKHQLRRHMSHIHHPIIGDTAHGDLR--HNRGMESHFSCGRL 313
Query: 318 ELHAESLSFDHPVTGCPVMVQA 339
LHA L +HPV+G P+ +QA
Sbjct: 314 MLHASELQLNHPVSGQPLTLQA 335
>sp|Q3ECD0|PUS2_ARATH RNA pseudourine synthase 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g76050 PE=2 SV=1
Length = 430
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 118/303 (38%), Gaps = 81/303 (26%)
Query: 85 DVLYEDEWLVAVNKP------------QGVYCESVL--ASVPCLLAGDS----------- 119
D++YED+ ++ VNKP G +L S+PC+ +S
Sbjct: 149 DIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEETF 208
Query: 120 AESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIA 179
++ + S + + + +RLD+ T+G++V+ K + L + F H + + Y++
Sbjct: 209 SDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVS 268
Query: 180 LCIG-PAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGE 238
L G P+P RI I G S R+ A+ +PGG V G
Sbjct: 269 LTTGVPSPPQGRIEIPIGRDSSN----RIRMAA-----IPGG--------------VRGG 305
Query: 239 GSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIR 298
+ S + V++ A LV +GRTHQIR H +Y+G+ +
Sbjct: 306 RARHAASRYK-------------VIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLL 352
Query: 299 GDVKYEG-------VYEWNGKRYDGHE------------LHAESLSFDHPVTGCPVMVQA 339
GD Y G + + R D E LHA L F HP TG V
Sbjct: 353 GDEVYGGTKSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSC 412
Query: 340 PLP 342
P P
Sbjct: 413 PPP 415
>sp|Q9HZM9|RLUC_PSEAE Ribosomal large subunit pseudouridine synthase C OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluC PE=3 SV=1
Length = 318
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 120/301 (39%), Gaps = 74/301 (24%)
Query: 55 PPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGVYCESVLASVPCL 114
PPL +D A L + + ++YED+ L+ VNKP G+
Sbjct: 72 PPLRLAERD------EPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVH--------- 116
Query: 115 LAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHK-V 173
G + + + + ++ L +RLDRDTSG+++I K + L +A K V
Sbjct: 117 -GGSGVSAGVIEVFRQLRPDAKDIELVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIV 175
Query: 174 SKTYIALCIGPAPKWK---RITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSF 230
K Y AL G P K R ++ + RS R+ + G +D +T F
Sbjct: 176 DKRYHALVRGHWPAGKKNVRAPLLKNNLRS---GERMVEVNVEG---------KDALTEF 223
Query: 231 EVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHC 290
VL G+ + LV A P +GRTHQIR+H
Sbjct: 224 RVLRRFGDFA-------------------------------TLVEARPITGRTHQIRVHA 252
Query: 291 QYLGISIRGDVKY------EGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPL-PL 343
++ G +I GD KY + E GKR LHA L P G + ++AP+ +
Sbjct: 253 KHAGHAIAGDPKYGDEDFSREIRELGGKRL---FLHAAQLRVPLP-DGQVLELEAPVDEM 308
Query: 344 W 344
W
Sbjct: 309 W 309
>sp|P59840|TRUC_HAEDU tRNA pseudouridine synthase C OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=truC PE=3 SV=1
Length = 243
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 109/267 (40%), Gaps = 57/267 (21%)
Query: 85 DVLYEDEWLVAVNKPQGVYCE-SVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANR 143
D+LY D+ L+A+NKP G+ S L L A + L + ++ +H R
Sbjct: 4 DILYRDDELIAINKPAGMLVHRSWLDKAETLFAMQT-------LRDQINQHVFPIH---R 53
Query: 144 LDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFG 203
LDR TSGV++ + ++A + + F HKV K Y+A+ G
Sbjct: 54 LDRPTSGVLLFALNSEMARLMSEQFEQHKVEKEYLAIVRG-------------------- 93
Query: 204 AWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQE---HEENNIVVEKK 260
Y A + G + V+ D + F +P Q+ +N VE
Sbjct: 94 ----YIA-EKGEIDYPLKVILDKIAD----------KFSQPKAAQQAVTFYQNLAKVEMP 138
Query: 261 AVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRY------ 314
A LV P++GR HQ+R H ++L I GD KY +++ +R
Sbjct: 139 YSTGKYATTRYSLVALSPKTGRKHQLRRHMKHLFHPIMGDTKYGDLHQ--NRRLTEKTGC 196
Query: 315 DGHELHAESLSFDHPVTGCPVMVQAPL 341
+ LHA L F HP T + + A L
Sbjct: 197 NRLMLHARLLHFTHPKTLQKITISALL 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,653,283
Number of Sequences: 539616
Number of extensions: 5363608
Number of successful extensions: 17164
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 16688
Number of HSP's gapped (non-prelim): 326
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)