Query 018563
Match_columns 354
No_of_seqs 209 out of 1136
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 17:14:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yc5_A NAD-dependent deacetyla 100.0 4E-58 1.4E-62 431.6 18.6 195 112-353 3-200 (246)
2 1ma3_A SIR2-AF2, transcription 100.0 6.8E-58 2.3E-62 431.8 19.1 197 109-353 2-203 (253)
3 3riy_A NAD-dependent deacetyla 100.0 9.4E-58 3.2E-62 435.3 16.1 214 110-353 9-232 (273)
4 1m2k_A Silent information regu 100.0 4E-57 1.4E-61 425.6 16.8 191 113-353 3-197 (249)
5 3u31_A SIR2A, transcriptional 100.0 3.6E-57 1.2E-61 434.3 14.9 202 107-353 30-236 (290)
6 3glr_A NAD-dependent deacetyla 100.0 1.4E-55 4.8E-60 422.1 16.5 195 110-353 9-217 (285)
7 1q1a_A HST2 protein; ternary c 100.0 8.6E-55 2.9E-59 417.8 18.2 200 109-353 5-231 (289)
8 1j8f_A SIRT2, sirtuin 2, isofo 100.0 7.2E-54 2.4E-58 417.3 18.4 197 110-354 29-241 (323)
9 1q14_A HST2 protein; histone d 100.0 6.7E-54 2.3E-58 422.6 16.7 204 105-353 9-239 (361)
10 2hjh_A NAD-dependent histone d 100.0 1.3E-53 4.5E-58 420.1 16.5 223 110-353 34-275 (354)
11 1s5p_A NAD-dependent deacetyla 100.0 9.5E-54 3.3E-58 399.4 12.7 180 122-353 1-187 (235)
12 4iao_A NAD-dependent histone d 100.0 3.1E-53 1.1E-57 427.8 16.9 223 110-353 172-413 (492)
13 3k35_A NAD-dependent deacetyla 100.0 1.3E-52 4.3E-57 406.2 10.6 194 108-353 30-226 (318)
14 3pki_A NAD-dependent deacetyla 100.0 2.4E-52 8E-57 408.1 8.5 194 108-353 30-226 (355)
15 2lcq_A Putative toxin VAPC6; P 82.4 0.62 2.1E-05 39.9 2.4 12 231-242 132-143 (165)
16 1lko_A Rubrerythrin all-iron(I 78.3 0.84 2.9E-05 40.4 1.9 14 229-242 153-166 (191)
17 3cf4_G Acetyl-COA decarboxylas 75.5 1.5 5.2E-05 37.6 2.7 26 109-134 21-46 (170)
18 2k5c_A Uncharacterized protein 69.9 4.4 0.00015 31.3 3.8 30 298-333 51-80 (95)
19 1yuz_A Nigerythrin; rubrythrin 66.9 2.8 9.6E-05 37.4 2.5 13 229-241 169-181 (202)
20 2kdx_A HYPA, hydrogenase/ureas 65.5 4.9 0.00017 32.6 3.5 18 224-241 66-83 (119)
21 6rxn_A Rubredoxin; electron tr 64.8 6.3 0.00022 27.0 3.4 14 229-242 2-15 (46)
22 3na7_A HP0958; flagellar bioge 63.5 5.6 0.00019 36.4 4.0 20 221-244 192-211 (256)
23 3a43_A HYPD, hydrogenase nicke 63.3 2.5 8.7E-05 35.5 1.4 22 223-244 62-83 (139)
24 1e8j_A Rubredoxin; iron-sulfur 62.4 7.4 0.00025 27.3 3.5 13 230-242 2-14 (52)
25 4rxn_A Rubredoxin; electron tr 61.6 11 0.00039 26.6 4.4 14 230-243 2-15 (54)
26 2kn9_A Rubredoxin; metalloprot 61.1 7.4 0.00025 29.9 3.6 15 229-243 25-39 (81)
27 2v3b_B Rubredoxin 2, rubredoxi 61.1 6.6 0.00023 27.9 3.1 14 230-243 2-15 (55)
28 3pwf_A Rubrerythrin; non heme 58.3 4.3 0.00015 35.2 2.1 13 230-242 137-149 (170)
29 1twf_L ABC10-alpha, DNA-direct 58.3 5.7 0.00019 29.7 2.4 11 231-241 28-38 (70)
30 1s24_A Rubredoxin 2; electron 57.9 6.6 0.00023 30.6 2.8 15 229-243 33-47 (87)
31 1dx8_A Rubredoxin; electron tr 55.5 9.1 0.00031 28.5 3.2 15 228-242 4-18 (70)
32 1yk4_A Rubredoxin, RD; electro 53.5 11 0.00036 26.4 3.1 13 231-243 2-14 (52)
33 4ayb_P DNA-directed RNA polyme 48.7 8.8 0.0003 26.5 1.9 14 231-244 3-16 (48)
34 2xig_A Ferric uptake regulatio 44.5 18 0.00062 30.1 3.7 52 184-243 58-111 (150)
35 1mzb_A Ferric uptake regulatio 39.7 26 0.00088 28.5 3.9 52 184-243 50-103 (136)
36 2gnr_A Conserved hypothetical 36.3 14 0.00047 31.2 1.7 14 228-241 44-57 (145)
37 2gmg_A Hypothetical protein PF 34.3 20 0.00069 28.8 2.2 11 231-241 67-77 (105)
38 3eya_A Pyruvate dehydrogenase 33.2 33 0.0011 34.4 4.2 28 107-134 186-213 (549)
39 3h0g_L DNA-directed RNA polyme 32.1 26 0.00088 25.6 2.3 10 298-307 38-47 (63)
40 2w57_A Ferric uptake regulatio 31.6 37 0.0013 28.1 3.6 52 184-243 49-102 (150)
41 4feg_A Pyruvate oxidase; carba 31.3 37 0.0013 34.5 4.3 29 106-134 196-224 (603)
42 2o03_A Probable zinc uptake re 30.0 55 0.0019 26.3 4.3 52 184-243 42-95 (131)
43 1e2b_A Enzyme IIB-cellobiose; 29.9 15 0.00051 29.0 0.8 14 123-136 4-17 (106)
44 4hpq_A ATG31, KLTH0C07942P; au 29.8 22 0.00075 26.3 1.6 15 10-24 1-15 (69)
45 3irb_A Uncharacterized protein 29.6 21 0.0007 30.0 1.7 11 231-241 47-57 (145)
46 3cf4_G Acetyl-COA decarboxylas 28.1 18 0.00063 30.6 1.1 16 329-344 103-118 (170)
47 2c31_A Oxalyl-COA decarboxylas 27.6 43 0.0015 33.7 3.9 28 107-134 198-225 (568)
48 1ytl_A Acetyl-COA decarboxylas 26.6 20 0.00069 31.0 1.1 14 331-344 106-119 (174)
49 2jrp_A Putative cytoplasmic pr 26.5 24 0.00081 27.1 1.3 12 231-242 18-29 (81)
50 2fe3_A Peroxide operon regulat 26.3 42 0.0014 27.5 3.0 52 184-243 53-105 (145)
51 2fiy_A Protein FDHE homolog; F 26.1 32 0.0011 32.6 2.5 17 227-243 204-220 (309)
52 3mwm_A ZUR, putative metal upt 25.9 49 0.0017 27.0 3.3 53 184-244 45-100 (139)
53 3eyy_A Putative iron uptake re 25.5 30 0.001 28.6 1.9 52 184-243 49-102 (145)
54 1ybh_A Acetolactate synthase, 24.9 53 0.0018 33.2 4.0 28 107-134 199-226 (590)
55 1pno_A NAD(P) transhydrogenase 23.9 40 0.0014 29.4 2.4 28 324-351 89-116 (180)
56 2jne_A Hypothetical protein YF 23.2 28 0.00097 27.6 1.3 11 298-308 61-71 (101)
57 2ywx_A Phosphoribosylaminoimid 23.2 32 0.0011 29.5 1.7 24 113-136 41-64 (157)
58 3fxa_A SIS domain protein; str 23.2 45 0.0015 28.4 2.7 29 109-137 31-59 (201)
59 1ozh_A ALS, acetolactate synth 22.5 61 0.0021 32.6 3.9 28 107-134 192-219 (566)
60 3vth_A Hydrogenase maturation 22.5 77 0.0026 33.7 4.8 39 299-341 184-222 (761)
61 2fsv_C NAD(P) transhydrogenase 22.2 16 0.00055 32.6 -0.4 41 311-351 96-139 (203)
62 3sho_A Transcriptional regulat 21.5 75 0.0026 26.4 3.8 29 109-138 26-54 (187)
63 1djl_A Transhydrogenase DIII; 21.2 16 0.00054 32.7 -0.7 41 311-351 95-138 (207)
64 3hww_A 2-succinyl-5-enolpyruvy 21.2 51 0.0018 33.1 3.0 33 110-142 85-117 (556)
65 1d4o_A NADP(H) transhydrogenas 20.9 39 0.0013 29.6 1.8 28 324-351 88-115 (184)
66 2q28_A Oxalyl-COA decarboxylas 20.4 45 0.0015 33.5 2.4 28 107-134 196-223 (564)
No 1
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=4e-58 Score=431.58 Aligned_cols=195 Identities=37% Similarity=0.687 Sum_probs=160.5
Q ss_pred HHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCC--CCCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCH
Q 018563 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (354)
Q Consensus 112 i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~--p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~ 189 (354)
+++|+++|++|++|||+|||||||+||||||||++|+|+ .|+ .++.+.|..+++..|.||. ..+..+.+++||.
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~-~~~~~~~~~~~f~~~p~~~~~~~~---~~~~~~~~~~Pn~ 78 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYK-KYSQNVFDIDFFYSHPEEFYRFAK---EGIFPMLQAKPNL 78 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHH---HHTGGGGGCCCCH
T ss_pred HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCcccc-cCCCceecHHHHhhCHHHHHHHHH---HHHHHhccCCCCH
Confidence 578999999999999999999999999999999999997 464 4678888877664444443 4445566899999
Q ss_pred HHHHHHHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCC
Q 018563 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (354)
Q Consensus 190 ~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~ 268 (354)
+|++|++|+++|++.+||||||||||++||+ +|+|+||+++.++|..|++.|+.+.+.+.+ +
T Consensus 79 ~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~--------------~--- 141 (246)
T 1yc5_A 79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL--------------E--- 141 (246)
T ss_dssp HHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT--------------T---
T ss_pred HHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHh--------------c---
Confidence 9999999999999999999999999999999 699999999999999999988765432110 0
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhc
Q 018563 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 348 (354)
Q Consensus 269 ~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~p 348 (354)
...+|+||.|||.|||+||||||++|++.++.|.+++++||++|||||||.|+|
T Consensus 142 --------------------------~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P 195 (246)
T 1yc5_A 142 --------------------------SSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYP 195 (246)
T ss_dssp --------------------------TCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEET
T ss_pred --------------------------cCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchh
Confidence 113799999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 018563 349 AYRLV 353 (354)
Q Consensus 349 A~~Lv 353 (354)
|++|+
T Consensus 196 ~~~l~ 200 (246)
T 1yc5_A 196 AAELP 200 (246)
T ss_dssp GGGHH
T ss_pred HHHHH
Confidence 99985
No 2
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=6.8e-58 Score=431.77 Aligned_cols=197 Identities=40% Similarity=0.718 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccC
Q 018563 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAA 185 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a 185 (354)
++++++|+++|++|++|||+|||||||+||||||||++|+|+ .|++ ++++.|..+++..|.||. ..+..+. +
T Consensus 2 ~~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~-~~~~~~~~~~~~f~~~p~~~~~f~~---~~~~~~~-~ 76 (253)
T 1ma3_A 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWR-KYDPEEVASISGFKRNPRAFWEFSM---EMKDKLF-A 76 (253)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSCC----------CCSC-SSCHHHHTBHHHHTTCHHHHHHHHH---HTHHHHT-C
T ss_pred hHHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCCcccc-cCChhheecHHHHhcCHHHHHHHHH---HHHHhcc-C
Confidence 367899999999999999999999999999999999999997 5766 577788776665444444 3444455 9
Q ss_pred CCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhh
Q 018563 186 QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESL 264 (354)
Q Consensus 186 ~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l 264 (354)
+||.+|++|++|+++|++.+||||||||||++||+ +|+||||+++.++|..|++.|+.+.+.+.+.
T Consensus 77 ~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~------------- 143 (253)
T 1ma3_A 77 EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFN------------- 143 (253)
T ss_dssp CCCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEEGGGTHHHHH-------------
T ss_pred CCCHHHHHHHHHHhcCCCeEEEeccccccHhHhCCCCEEEeCCCcCeeeeCCCCCcCcHHHHHHHhc-------------
Confidence 99999999999999999999999999999999999 6999999999999999999887654322110
Q ss_pred cCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCC-eeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccC
Q 018563 265 DYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG-VLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 343 (354)
Q Consensus 265 ~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG-~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTS 343 (354)
...+|+||+||| .|||+||||||++|++.++.|.+++++||++||||||
T Consensus 144 ------------------------------~~~~p~C~~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTS 193 (253)
T 1ma3_A 144 ------------------------------KGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSS 193 (253)
T ss_dssp ------------------------------TTCCCCCTTTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCC
T ss_pred ------------------------------cCCCCCCCCCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCC
Confidence 123799999999 9999999999999999999999999999999999999
Q ss_pred Cchhcccccc
Q 018563 344 LMTMSAYRLV 353 (354)
Q Consensus 344 L~V~pA~~Lv 353 (354)
|.|+||++|+
T Consensus 194 l~V~P~~~l~ 203 (253)
T 1ma3_A 194 LVVYPAAELP 203 (253)
T ss_dssp SCEETGGGHH
T ss_pred ceeccHHHHH
Confidence 9999999985
No 3
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=9.4e-58 Score=435.28 Aligned_cols=214 Identities=29% Similarity=0.554 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccCC
Q 018563 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQ 186 (354)
Q Consensus 110 ~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~ 186 (354)
+++++|+++|++|++|||+|||||||+||||||||++|+|+ .|++ .+.+.|..+ +..||+++...+..+.+++
T Consensus 9 ~~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~-~~~~~~l~~~~~f~~~---p~~~w~fy~~~~~~~~~~~ 84 (273)
T 3riy_A 9 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWR-KWQAQDLATPLAFAHN---PSRVWEFYHYRREVMGSKE 84 (273)
T ss_dssp CCHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGGGEET-TEEHHHHSSHHHHHHC---HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCcEEEEECcccchhhCCCccccccchhh-hCChhhcCCHHHHhhC---HHHHHHHHHHHHHHhhhCC
Confidence 56889999999999999999999999999999999999997 4554 466667665 4577875554444567899
Q ss_pred CCHHHHHHHHHHH----cCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHH
Q 018563 187 PNPAHFALASLEK----AGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 261 (354)
Q Consensus 187 Pn~~H~aLa~L~~----~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~ 261 (354)
||.+|++|++|++ +|++.+||||||||||++||+ +|+||||+++.++|.+|++.|++.. +|.|...
T Consensus 85 Pn~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~~~vielHG~~~~~~C~~C~~~~~~~~--------~p~~~~~- 155 (273)
T 3riy_A 85 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPAL- 155 (273)
T ss_dssp CCHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEECCC--------SSSSGGG-
T ss_pred CCHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCCCCEEEecCcCCeeEcCCCCCcccccc--------cchhhhh-
Confidence 9999999999995 699999999999999999999 7999999999999999999875431 2222111
Q ss_pred hhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCC--CCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEE
Q 018563 262 ESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTC--QKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLV 339 (354)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~C--p~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLV 339 (354)
. .+..||++..... . ....+|+| |.|||.|||+||||||++|++.++.|.+++++||++||
T Consensus 156 ---~-----------~~~~~~~~~~~~~--~-~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lv 218 (273)
T 3riy_A 156 ---S-----------GKGAPEPGTQDAS--I-PVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLV 218 (273)
T ss_dssp ---T-----------TCCCCSTTCCCCC--C-CGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEE
T ss_pred ---h-----------cccCCcccccccc--c-ccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEE
Confidence 0 0112222221000 0 12357999 78999999999999999999999999999999999999
Q ss_pred EccCCchhcccccc
Q 018563 340 LGSSLMTMSAYRLV 353 (354)
Q Consensus 340 vGTSL~V~pA~~Lv 353 (354)
|||||+|+||++|+
T Consensus 219 iGTSl~V~Paa~l~ 232 (273)
T 3riy_A 219 VGTSSVVYPAAMFA 232 (273)
T ss_dssp ESCCSCEETGGGHH
T ss_pred EeeCCcchhHHHhH
Confidence 99999999999986
No 4
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=4e-57 Score=425.61 Aligned_cols=191 Identities=38% Similarity=0.671 Sum_probs=168.6
Q ss_pred HHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCH
Q 018563 113 NQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (354)
Q Consensus 113 ~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~ 189 (354)
++|+++|++|++|||+|||||||+||||||||++|+|+ .|++ ++.+.|..++ ..||+++...+..+.+++||.
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~-~~~~~~~~~~~~f~~~p---~~~w~~~~~~~~~~~~~~Pn~ 78 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWN-RYRPEELANPQAFAKDP---EKVWKWYAWRMEKVFNAQPNK 78 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHH-HSCHHHHSSHHHHHHCH---HHHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCCcCcc-CCCHHhcccHHHHhcCH---HHHHHHHHHHHHHhCcCCCCH
Confidence 57899999999999999999999999999999999997 4665 5777777654 467776666666667899999
Q ss_pred HHHHHHHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCC
Q 018563 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (354)
Q Consensus 190 ~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~ 268 (354)
+|++|++|+++|++.+||||||||||++||+ +|+|+||+++.++|..|++.|+.+..
T Consensus 79 ~H~~La~L~~~g~~~~viTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~---------------------- 136 (249)
T 1m2k_A 79 AHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESA---------------------- 136 (249)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCSEEETTEEEEEEEESSSSCEEECSSC----------------------
T ss_pred HHHHHHHHHhCCCCcEEEECCccchhhhcCCCcEEEecCCcceeEeCCCCCcccchhh----------------------
Confidence 9999999999999999999999999999998 69999999999999999987654210
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhc
Q 018563 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 348 (354)
Q Consensus 269 ~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~p 348 (354)
++ ...+|+||+|||.|||+||||||++|++.++.|.+++++||++|||||||.|+|
T Consensus 137 ------------------~~------~~~~p~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P 192 (249)
T 1m2k_A 137 ------------------PK------IPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQP 192 (249)
T ss_dssp ------------------CC------SSSCCBCSSSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTT
T ss_pred ------------------cc------CCCCCCCCCCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccc
Confidence 00 113799999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 018563 349 AYRLV 353 (354)
Q Consensus 349 A~~Lv 353 (354)
|++|+
T Consensus 193 ~~~l~ 197 (249)
T 1m2k_A 193 AASLP 197 (249)
T ss_dssp GGGHH
T ss_pred hHHHH
Confidence 99875
No 5
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=3.6e-57 Score=434.34 Aligned_cols=202 Identities=29% Similarity=0.532 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCC-CCCCCCCCCCCC---CHHHHHhchHHHHHHHHHHHHHhhhh
Q 018563 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRS-PNGAYSSGFKPI---THQQFVRSSRARRRYWARSYAGWRRF 182 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg-~~Gl~~~~~~p~---~~~~f~~~~~~~~~~w~~~~~~~~~~ 182 (354)
+.+.++++|+++|++|++|||+|||||||+|||||||| .+|+|+ .|++. +...|.. ++..||.++ ..+...
T Consensus 30 ~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~-~~~p~~~~~~~~f~~---~p~~~w~~~-~~~~~~ 104 (290)
T 3u31_A 30 TQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWS-KYDPRIYGTIWGFWK---YPEKIWEVI-RDISSD 104 (290)
T ss_dssp CEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGG-GSCHHHHTBHHHHHH---CHHHHHHHH-HHHHHH
T ss_pred hhHHHHHHHHHHHHhCCCEEEEeCCccccccCCccccccccchhh-cCCHHHhhCHHhhhh---CHHHHHHHH-HHHhhh
Confidence 34578999999999999999999999999999999999 799997 57653 4455544 455777543 333333
Q ss_pred ccCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHH
Q 018563 183 MAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 261 (354)
Q Consensus 183 ~~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~ 261 (354)
.+++||.+|++|++|++.|++.+||||||||||++||+ +|+||||+++.++|..|++.|+.+... ..
T Consensus 105 ~~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~~~vielHGs~~~~~C~~C~~~~~~~~~~----------~~-- 172 (290)
T 3u31_A 105 YEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIM----------LQ-- 172 (290)
T ss_dssp SCCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEECCTGG----------GS--
T ss_pred ccCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCCCcEEEecCCcCcceeCCCCCcCChhHhh----------hc--
Confidence 68999999999999999999999999999999999999 799999999999999999887654210 00
Q ss_pred hhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEc
Q 018563 262 ESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLG 341 (354)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvG 341 (354)
+ ...+ ....+|+|| |||.|||+||||||++|++.++.|.+++++||++||||
T Consensus 173 --------------------~-~~~~------~~~~~P~C~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviG 224 (290)
T 3u31_A 173 --------------------K-TSHF------MHQLPPECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIG 224 (290)
T ss_dssp --------------------T-TSST------TTSSSCBCT-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEES
T ss_pred --------------------c-cccc------cccCCCCCC-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEEC
Confidence 0 0000 123479999 99999999999999999999999999999999999999
Q ss_pred cCCchhcccccc
Q 018563 342 SSLMTMSAYRLV 353 (354)
Q Consensus 342 TSL~V~pA~~Lv 353 (354)
|||+|+||++|+
T Consensus 225 TSl~V~Paa~l~ 236 (290)
T 3u31_A 225 TSSTVSTATNLC 236 (290)
T ss_dssp CCSCSHHHHHHH
T ss_pred cCCcchhHHHHH
Confidence 999999999986
No 6
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=1.4e-55 Score=422.08 Aligned_cols=195 Identities=30% Similarity=0.521 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHc--CCcEEEEECCccCccCCCCCcCCCC-CCCCC--CCCC------CCHHHHHhchHHHHHHHHHHHHH
Q 018563 110 EDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSS--GFKP------ITHQQFVRSSRARRRYWARSYAG 178 (354)
Q Consensus 110 ~~i~~La~~l~~--ak~iVVlTGAGISaaSGIPDFRg~~-Gl~~~--~~~p------~~~~~f~~~~~~~~~~w~~~~~~ 178 (354)
..++.++++|++ |++|||+|||||||+||||||||++ |+|.. .|.. ++...|.+++ ..||..+...
T Consensus 9 ~~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P---~~f~~~~~~~ 85 (285)
T 3glr_A 9 LSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNP---KPFFTLAKEL 85 (285)
T ss_dssp CCHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCC---HHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCc---HHHHHHHHHh
Confidence 358899999997 8999999999999999999999995 99973 2321 2344455554 4566543221
Q ss_pred hhhhccCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhCh
Q 018563 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNP 255 (354)
Q Consensus 179 ~~~~~~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np 255 (354)
...+++||.+|++|++|+++|++.+||||||||||++||+ +|+||||+++.++|..|++.|+.+.+...+.
T Consensus 86 --~~~~a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~---- 159 (285)
T 3glr_A 86 --YPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM---- 159 (285)
T ss_dssp --STTSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH----
T ss_pred --hhccCCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh----
Confidence 1247999999999999999999999999999999999995 6999999999999999999887765432220
Q ss_pred hhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCC
Q 018563 256 KWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECD 335 (354)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aD 335 (354)
...+|+|+.|||.|||+||||||++|.+.+ .+.+++.+||
T Consensus 160 ---------------------------------------~~~~P~C~~Cgg~lrP~IV~FGE~lp~~~~-~~~~~~~~aD 199 (285)
T 3glr_A 160 ---------------------------------------ADRVPRCPVCTGVVKPDIVFFGEPLPQRFL-LHVVDFPMAD 199 (285)
T ss_dssp ---------------------------------------TTCCCBCTTTCCBEEEEECCTTSBCCGGGG-GHHHHHHHCS
T ss_pred ---------------------------------------cCCCCCCCCCCCccCCcEEEeCCcCCHHHH-HHHHHHhcCC
Confidence 124799999999999999999999999877 5578889999
Q ss_pred EEEEEccCCchhcccccc
Q 018563 336 AFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 336 llLVvGTSL~V~pA~~Lv 353 (354)
++|||||||+|+||+.|+
T Consensus 200 lllviGTSl~V~Paa~l~ 217 (285)
T 3glr_A 200 LLLILGTSLEVEPFASLT 217 (285)
T ss_dssp EEEEESCCCCEETTGGGG
T ss_pred EEEEeCCCCccccHHHHH
Confidence 999999999999999987
No 7
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=8.6e-55 Score=417.82 Aligned_cols=200 Identities=27% Similarity=0.502 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHc--CCcEEEEECCccCccCCCCCcCCCC-CCCCCC--CC---C---CCHHHHHhchHHHHHHHHHHHH
Q 018563 109 IEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYA 177 (354)
Q Consensus 109 ~~~i~~La~~l~~--ak~iVVlTGAGISaaSGIPDFRg~~-Gl~~~~--~~---p---~~~~~f~~~~~~~~~~w~~~~~ 177 (354)
++++++|+++|++ |++|||+|||||||+||||||||++ |+|... |. | ++...|..+++ .||.++..
T Consensus 5 ~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~---~f~~~~~~ 81 (289)
T 1q1a_A 5 EMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPL---PFYTLAKE 81 (289)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCH---HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHH---HHHHHHHH
Confidence 4689999999999 9999999999999999999999995 999741 22 1 24445666544 56653221
Q ss_pred HhhhhccCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhC
Q 018563 178 GWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALN 254 (354)
Q Consensus 178 ~~~~~~~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~n 254 (354)
....+++||.+|++|++|++.|++.+||||||||||++||+ +|+||||+++.++|.+|++.|+.+.+...+..
T Consensus 82 --~~~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~-- 157 (289)
T 1q1a_A 82 --LYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAE-- 157 (289)
T ss_dssp --HCSSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTC--
T ss_pred --HhhCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhh--
Confidence 22348999999999999999999999999999999999997 59999999999999999998877654432210
Q ss_pred hhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHH-------
Q 018563 255 PKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKA------- 327 (354)
Q Consensus 255 p~~~~~~~~l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A------- 327 (354)
...+.+|+||+|||.|||+||||||++|++.++.+
T Consensus 158 --------------------------------------~~~~~~P~C~~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l 199 (289)
T 1q1a_A 158 --------------------------------------HPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWL 199 (289)
T ss_dssp --------------------------------------SSCCSCCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHH
T ss_pred --------------------------------------ccCCCCccCCCCCCEECCCEEEcCCCCCHHHHHHHHHhhhhh
Confidence 00234799999999999999999999999865433
Q ss_pred ------HHHhhcCCEEEEEccCCchhcccccc
Q 018563 328 ------MEAAKECDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 328 ------~~~~~~aDllLVvGTSL~V~pA~~Lv 353 (354)
.+.+.+||++|||||||+|+||++|+
T Consensus 200 ~~~~~a~~~~~~~DlllviGTSl~V~Pa~~l~ 231 (289)
T 1q1a_A 200 REKITTSGKHPQQPLVIVVGTSLAVYPFASLP 231 (289)
T ss_dssp HHHHHC----CCCCEEEEESCCCCEETTTHHH
T ss_pred hhhhhHHHHhccCCEEEEEccCCChhhHHHHH
Confidence 34578999999999999999999886
No 8
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=7.2e-54 Score=417.26 Aligned_cols=197 Identities=29% Similarity=0.537 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHc--CCcEEEEECCccCccCCCCCcCCC-CCCCCCC--CC---C---CCHHHHHhchHHHHHHHHHHHHH
Q 018563 110 EDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSP-NGAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYAG 178 (354)
Q Consensus 110 ~~i~~La~~l~~--ak~iVVlTGAGISaaSGIPDFRg~-~Gl~~~~--~~---p---~~~~~f~~~~~~~~~~w~~~~~~ 178 (354)
.+++.|+++|++ |++|||+|||||||+||||||||+ +|+|... |. | ++...|..++ +.||.++.
T Consensus 29 ~~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~p---~~f~~~~r-- 103 (323)
T 1j8f_A 29 LTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHP---EPFFALAK-- 103 (323)
T ss_dssp SSHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHCC---HHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcCH---HHHHHHHH--
Confidence 468999999997 899999999999999999999999 4999841 22 1 2344455544 45665421
Q ss_pred hhhhccCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCC--CCcccchhhHHHHHHhh
Q 018563 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLD--CGFSFCRDLFQDQVKAL 253 (354)
Q Consensus 179 ~~~~~~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~--C~~~~~~~~~~~~l~~~ 253 (354)
.....+++||.+|++|++|+++|++.+||||||||||++||+ +|+||||+++.++|++ |++.|+++.+.+.+.
T Consensus 104 ~~~~~~a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~-- 181 (323)
T 1j8f_A 104 ELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF-- 181 (323)
T ss_dssp HHSSSSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHH--
T ss_pred HHhhCcCCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhc--
Confidence 111248999999999999999999999999999999999996 6999999999999999 999887654332110
Q ss_pred ChhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhc
Q 018563 254 NPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKE 333 (354)
Q Consensus 254 np~~~~~~~~l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~ 333 (354)
...+|+||+|||.|||+||||||++|++.++.|.+++++
T Consensus 182 -----------------------------------------~~~~P~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~ 220 (323)
T 1j8f_A 182 -----------------------------------------SEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLK 220 (323)
T ss_dssp -----------------------------------------TTCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHGGGS
T ss_pred -----------------------------------------cCCCCCCcCCCCccCCCEEecCCcCCHHHHHHHHHHHhC
Confidence 124799999999999999999999999999999999999
Q ss_pred CCEEEEEccCCchhccccccC
Q 018563 334 CDAFLVLGSSLMTMSAYRLVR 354 (354)
Q Consensus 334 aDllLVvGTSL~V~pA~~Lv~ 354 (354)
||++|||||||+|+||++|++
T Consensus 221 aDlllviGTSl~V~P~a~l~~ 241 (323)
T 1j8f_A 221 VDLLLVMGTSLQVQPFASLIS 241 (323)
T ss_dssp CSEEEEESSCSCSHHHHHHHT
T ss_pred CCEEEEEeeCcccHHHHHHHH
Confidence 999999999999999999874
No 9
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=6.7e-54 Score=422.65 Aligned_cols=204 Identities=26% Similarity=0.497 Sum_probs=151.6
Q ss_pred CCCCHHHHHHHHHHHHc--CCcEEEEECCccCccCCCCCcCCCC-CCCCC--CCC---C---CCHHHHHhchHHHHHHHH
Q 018563 105 DPPSIEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSS--GFK---P---ITHQQFVRSSRARRRYWA 173 (354)
Q Consensus 105 ~~~~~~~i~~La~~l~~--ak~iVVlTGAGISaaSGIPDFRg~~-Gl~~~--~~~---p---~~~~~f~~~~~~~~~~w~ 173 (354)
.++.+.+++.|+++|++ |++|||+|||||||+||||||||++ |+|.. .|. | ++...|..++. .||.
T Consensus 9 ~~~~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P~---~f~~ 85 (361)
T 1q14_A 9 TASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPL---PFYT 85 (361)
T ss_dssp SCCHHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCCH---HHHH
T ss_pred chhHHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCHH---HHHH
Confidence 33445689999999999 9999999999999999999999995 99974 122 1 23444665543 5665
Q ss_pred HHHHHhhhhccCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHH
Q 018563 174 RSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQV 250 (354)
Q Consensus 174 ~~~~~~~~~~~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l 250 (354)
++. .....+++||.+|++|++|++.|++.+||||||||||++||+ +|+||||+++.++|..|++.|+.+.+...+
T Consensus 86 ~~~--~~~~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~ 163 (361)
T 1q14_A 86 LAK--ELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKL 163 (361)
T ss_dssp HHT--TTSCCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHHT
T ss_pred HHH--HHhhCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHHHH
Confidence 321 112347999999999999999999999999999999999997 599999999999999999988776543221
Q ss_pred HhhChhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHH-
Q 018563 251 KALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAME- 329 (354)
Q Consensus 251 ~~~np~~~~~~~~l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~- 329 (354)
. . . ....+|+||.|||.|||+||||||++|++.++.+.+
T Consensus 164 ~--------------~----------------~----------~~~~~P~Cp~Cgg~lrP~VV~FGE~lp~~~~~~~~~a 203 (361)
T 1q14_A 164 A--------------E----------------H----------PIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLND 203 (361)
T ss_dssp T--------------S----------------S----------SCSCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHH
T ss_pred h--------------h----------------c----------ccCCCCCCcCCCCEeCCCcccccccCCHHHHHHHHHH
Confidence 0 0 0 012479999999999999999999999988766655
Q ss_pred ------------HhhcCCEEEEEccCCchhcccccc
Q 018563 330 ------------AAKECDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 330 ------------~~~~aDllLVvGTSL~V~pA~~Lv 353 (354)
.+.+||++|||||||+|+||++|+
T Consensus 204 ~~~l~~~i~~~~~~~~aDllLviGTSl~V~Paa~l~ 239 (361)
T 1q14_A 204 SEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLP 239 (361)
T ss_dssp HHHHHHC--------CCCEEEEESCCCCSTTGGGHH
T ss_pred HHhhhhcchhhhhhccCCEEEEECCCCCchhHHHHH
Confidence 567999999999999999999986
No 10
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-53 Score=420.11 Aligned_cols=223 Identities=26% Similarity=0.419 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCC-----CC---CCCHHHHHhchHHHHHHHHHHHHHhhh
Q 018563 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG-----FK---PITHQQFVRSSRARRRYWARSYAGWRR 181 (354)
Q Consensus 110 ~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~-----~~---p~~~~~f~~~~~~~~~~w~~~~~~~~~ 181 (354)
++++.|+++|++|++|||+|||||||+||||||||++|+|+.. ++ .++++.|..++. .||.++...+
T Consensus 34 ~~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~~l~~p~~~~~~~~F~~~P~---~f~~~~~~~~-- 108 (354)
T 2hjh_A 34 FTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPS---VFYNIANMVL-- 108 (354)
T ss_dssp CSHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGGCCSSGGGGGBHHHHHHCTH---HHHHHGGGGC--
T ss_pred HHHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhhcCCCHHHhCCHHHHhcCHH---HHHHHHHHHc--
Confidence 4689999999999999999999999999999999999999841 22 256777777654 4665432222
Q ss_pred hccCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhH
Q 018563 182 FMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWA 258 (354)
Q Consensus 182 ~~~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~ 258 (354)
...++||.+|++|++|+++|++.+||||||||||++||+ +|+||||+++.++|.+|++.++++.+++.+...++.+.
T Consensus 109 ~~~~~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~P~C 188 (354)
T 2hjh_A 109 PPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLC 188 (354)
T ss_dssp CCCSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHTTCCCBC
T ss_pred cccCCCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhccCCCcC
Confidence 236899999999999999999999999999999999997 79999999999999999999988877666543332211
Q ss_pred HHHhhhcCCCCCCCCCcC-------cccCCC-CCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHH
Q 018563 259 EAIESLDYGSPGSDRSFG-------MKQRPD-GDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEA 330 (354)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~-------~~~~pd-~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~ 330 (354)
.++.+ +..+++ ++..+.... ....+.|..|||.|||+||||||++|.+.++.|.++
T Consensus 189 -------------p~C~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~ 252 (354)
T 2hjh_A 189 -------------PYCYKKRREYFPEGYNNKVGVAASQGSM---SERPPYILNSYGVLKPDITFFGEALPNKFHKSIRED 252 (354)
T ss_dssp -------------TTTHHHHHHHCCC--------------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHH
T ss_pred -------------cccccccccccccccccccccccccccc---ccccccccccCCeeCCChhhccccCCHHHHHHHHHH
Confidence 11100 000000 111221111 113568999999999999999999999999999999
Q ss_pred hhcCCEEEEEccCCchhcccccc
Q 018563 331 AKECDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 331 ~~~aDllLVvGTSL~V~pA~~Lv 353 (354)
+++||++|||||||+|+||++|+
T Consensus 253 ~~~aDllLviGTSL~V~Paa~lv 275 (354)
T 2hjh_A 253 ILECDLLICIGTSLKVAPVSEIV 275 (354)
T ss_dssp TTTCCEEEEESCCCCEETGGGHH
T ss_pred HhhCCEEEEECcCCCchhHHHHH
Confidence 99999999999999999999986
No 11
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=9.5e-54 Score=399.44 Aligned_cols=180 Identities=33% Similarity=0.531 Sum_probs=146.4
Q ss_pred CCcEEEEECCccCccCCCCCcCCCCCCCCCCCCC---CCHHHHHhchHHHHHHHHHHHHHhhhh--ccCCCCHHHHHHHH
Q 018563 122 SAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRF--MAAQPNPAHFALAS 196 (354)
Q Consensus 122 ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~--~~a~Pn~~H~aLa~ 196 (354)
|++|||+|||||||+||||||||++|+|+ .|++ ++++.|..+++..|.||.+ .+..+ .+++||.+|++|++
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~-~~~~~~~~~~~~f~~~p~~~~~f~~~---~~~~~~~~~a~Pn~~H~~La~ 76 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWE-EHRVEDVATPEGFDRDPELVQAFYNA---RRRQLQQPEIQPNAAHLALAK 76 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEET-TEEHHHHSSHHHHHHCHHHHHHHHHH---HHHHHTSTTCCCCHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCcc-CCCHhHcccHHHHhhCHHHHHHHHHH---HHHHhhhcCCCCCHHHHHHHH
Confidence 68999999999999999999999999997 5655 4778888776655555543 22223 35999999999999
Q ss_pred HHH-cCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCC
Q 018563 197 LEK-AGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRS 274 (354)
Q Consensus 197 L~~-~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~~~~~ 274 (354)
|++ .|++.+||||||||||++||+ +|+||||+++.++|.+|++.|+++.
T Consensus 77 L~~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~----------------------------- 127 (235)
T 1s5p_A 77 LQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG----------------------------- 127 (235)
T ss_dssp HHHHHGGGEEEEESCCSSHHHHHTCCSCEETTEEEEEEEETTTCCEEECCS-----------------------------
T ss_pred HHHhhCCceEEEeccccchhhhcCCCcEEEecCCceEEEeCCCCCcccchh-----------------------------
Confidence 999 699999999999999999998 6999999999999999998765321
Q ss_pred cCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhcccccc
Q 018563 275 FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 275 ~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA~~Lv 353 (354)
+ ++ ...+|+|+.|||.|||+||||||+ | +.++++.+++++||++|||||||+|+||++|+
T Consensus 128 ---------~--~~------~~~~p~c~~Cgg~lrP~vv~FGE~-p-~~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~ 187 (235)
T 1s5p_A 128 ---------D--VT------PEDKCHCCQFPAPLRPHVVWFGEM-P-LGMDEIYMALSMADIFIAIGTSGHVYPAAGFV 187 (235)
T ss_dssp ---------C--CC------SSCCC-------CEEEEECCTTSC-C-SSHHHHHHHHHHCSEEEEESCCTTEETGGGHH
T ss_pred ---------h--cc------CCCCCCCCCCCCeecCcEEEeCCC-H-HHHHHHHHHHhcCCEEEEECcCCchhhHHHHH
Confidence 0 00 124789999999999999999999 7 46899999999999999999999999999986
No 12
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-53 Score=427.76 Aligned_cols=223 Identities=27% Similarity=0.431 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCC-----CCC---CCHHHHHhchHHHHHHHHHHHHHhhh
Q 018563 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG-----FKP---ITHQQFVRSSRARRRYWARSYAGWRR 181 (354)
Q Consensus 110 ~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~-----~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~ 181 (354)
.++++|+++|++|++|||+|||||||+||||||||++|+|... +.| ++++.|..+++ .||.++ ....
T Consensus 172 ~~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~~gl~~Pe~v~s~~~F~~dP~---~Fy~~~--r~~~ 246 (492)
T 4iao_A 172 FTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPS---VFYNIA--NMVL 246 (492)
T ss_dssp CSHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHTSCCSCGGGGGBHHHHHHCHH---HHHHHG--GGGC
T ss_pred HHHHHHHHHHHhCCcEEEEeCcccccccCCccccCchHHHHhhhhcCCCCHHHhcCHHHHhhChH---HHHHHH--HHhh
Confidence 4688899999999999999999999999999999999999731 123 46677777654 466432 2212
Q ss_pred hccCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhH
Q 018563 182 FMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWA 258 (354)
Q Consensus 182 ~~~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~ 258 (354)
...++||.+|++|++|+++|++.+||||||||||++||+ +|+||||+++.++|..|++.++++.+.+.+...++
T Consensus 247 ~~~~~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~~--- 323 (492)
T 4iao_A 247 PPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLEL--- 323 (492)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTCC---
T ss_pred CCcCCCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccCC---
Confidence 236899999999999999999999999999999999996 69999999999999999999988776655543322
Q ss_pred HHHhhhcCCCCCCCCCc--------CcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHH
Q 018563 259 EAIESLDYGSPGSDRSF--------GMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEA 330 (354)
Q Consensus 259 ~~~~~l~~~~~~~~~~~--------~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~ 330 (354)
|.+.++. ....+++++++..+. .....|.|+.|||.|||+||||||++|.+.++.|.++
T Consensus 324 ----------P~Cp~Cg~~~~~~~~~~~~~~dg~~~~~~~---~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~ 390 (492)
T 4iao_A 324 ----------PLCPYCYKKRREYFPEGYNNKVGVAASQGS---MSERPPYILNSYGVLKPDITFFGEALPNKFHKSIRED 390 (492)
T ss_dssp ----------CBCTTTHHHHHHHSTTCCCCC--------C---CTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHH
T ss_pred ----------CCCccccccccccccccccccccccccccc---ccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHH
Confidence 1111110 011234555544332 1334689999999999999999999999999999999
Q ss_pred hhcCCEEEEEccCCchhcccccc
Q 018563 331 AKECDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 331 ~~~aDllLVvGTSL~V~pA~~Lv 353 (354)
+++||++|||||||+|+||++||
T Consensus 391 ~~~aDLlLVIGTSL~VyPaA~Lv 413 (492)
T 4iao_A 391 ILECDLLICIGTSLKVAPVSEIV 413 (492)
T ss_dssp TTTCSEEEEESCCCCEETGGGHH
T ss_pred HhhCCEEEEeccCCCccchhhHH
Confidence 99999999999999999999986
No 13
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-52 Score=406.21 Aligned_cols=194 Identities=29% Similarity=0.498 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCCCCHHHHHhchHHHHHHHHHHHHHhhhhccCCC
Q 018563 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQP 187 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~P 187 (354)
.+++++.|+++|++|++|||+|||||||+||||||||++|+|+.. ++..++. | ...+.+++|
T Consensus 30 l~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~-------~~~~~p~----~-------~~~f~~a~P 91 (318)
T 3k35_A 30 LERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTME-------ERGLAPK----F-------DTTFESARP 91 (318)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHH-------TTTCCCC----C-------SSCTTTCCC
T ss_pred HHHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhh-------hccCCHH----H-------HHHhhhCCC
Confidence 357899999999999999999999999999999999999999621 0011111 0 113458999
Q ss_pred CHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhh
Q 018563 188 NPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESL 264 (354)
Q Consensus 188 n~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l 264 (354)
|.+|++|++|+++|++.+||||||||||++||+ +|+||||+++.++|.+|++.|+++.+...
T Consensus 92 n~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~--------------- 156 (318)
T 3k35_A 92 TQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGT--------------- 156 (318)
T ss_dssp CHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSC---------------
T ss_pred CHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhh---------------
Confidence 999999999999999999999999999999998 69999999999999999998865432100
Q ss_pred cCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCC
Q 018563 265 DYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSL 344 (354)
Q Consensus 265 ~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL 344 (354)
....++++. ......+.|+.|||.|||+||||||++|.+.++.|.+++++||++|||||||
T Consensus 157 ------------~~~~p~~~~-------C~~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL 217 (318)
T 3k35_A 157 ------------MGLKATGRL-------CTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSL 217 (318)
T ss_dssp ------------CSSCEEEEE-------CCC--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCC
T ss_pred ------------cccCCCCCc-------CcccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCC
Confidence 000000000 0011234567899999999999999999999999999999999999999999
Q ss_pred chhcccccc
Q 018563 345 MTMSAYRLV 353 (354)
Q Consensus 345 ~V~pA~~Lv 353 (354)
+||||++|+
T Consensus 218 ~V~Paa~l~ 226 (318)
T 3k35_A 218 QIRPSGNLP 226 (318)
T ss_dssp CSTTGGGHH
T ss_pred CchhhhhhH
Confidence 999999985
No 14
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=2.4e-52 Score=408.06 Aligned_cols=194 Identities=29% Similarity=0.505 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCCCCHHHHHhchHHHHHHHHHHHHHhhhhccCCC
Q 018563 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQP 187 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~P 187 (354)
.+++++.|+++|++|++|||+|||||||+||||||||++|+|+. .++..++. | +..+.+++|
T Consensus 30 l~~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~-------~~~~~~p~----~-------~~~f~~a~P 91 (355)
T 3pki_A 30 LERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTM-------EERGLAPK----F-------DTTFESARP 91 (355)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHH-------HHTTCCCC----C-------SSCTTTCCC
T ss_pred HHHHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCCCccch-------hhccCChH----H-------HHHHhhCCC
Confidence 36789999999999999999999999999999999999999962 01011110 0 113458999
Q ss_pred CHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhh
Q 018563 188 NPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESL 264 (354)
Q Consensus 188 n~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l 264 (354)
|.+|++|++|+++|++.+||||||||||++||+ +|+||||+++.++|.+|++.|.++.+...
T Consensus 92 n~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~--------------- 156 (355)
T 3pki_A 92 TQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGT--------------- 156 (355)
T ss_dssp CHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSC---------------
T ss_pred CHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhh---------------
Confidence 999999999999999999999999999999997 69999999999999999998865432100
Q ss_pred cCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCC
Q 018563 265 DYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSL 344 (354)
Q Consensus 265 ~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL 344 (354)
+...+++. . . .....+.|+.|||.|||+||||||++|.+.++.|.+++++||++|||||||
T Consensus 157 ------------~~~~~~~~--~----C-~~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL 217 (355)
T 3pki_A 157 ------------MGLKATGR--L----C-TVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSL 217 (355)
T ss_dssp ------------CSSCEEEE--E----C-CCCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCC
T ss_pred ------------cccCCCCC--c----c-ccccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCC
Confidence 00000000 0 0 001234578999999999999999999999999999999999999999999
Q ss_pred chhcccccc
Q 018563 345 MTMSAYRLV 353 (354)
Q Consensus 345 ~V~pA~~Lv 353 (354)
+||||++|+
T Consensus 218 ~V~Paa~Lp 226 (355)
T 3pki_A 218 QIRPSGNLP 226 (355)
T ss_dssp CSTTGGGTT
T ss_pred CchhhhhhH
Confidence 999999986
No 15
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=82.35 E-value=0.62 Score=39.93 Aligned_cols=12 Identities=42% Similarity=1.071 Sum_probs=9.7
Q ss_pred eeeeCCCCcccc
Q 018563 231 TVVCLDCGFSFC 242 (354)
Q Consensus 231 ~~~C~~C~~~~~ 242 (354)
..+|..|++.|.
T Consensus 132 ~y~C~~Cg~~~~ 143 (165)
T 2lcq_A 132 RYVCIGCGRKFS 143 (165)
T ss_dssp CEEESSSCCEES
T ss_pred EEECCCCCCccc
Confidence 578999998763
No 16
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=78.33 E-value=0.84 Score=40.38 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.3
Q ss_pred cceeeeCCCCcccc
Q 018563 229 VYTVVCLDCGFSFC 242 (354)
Q Consensus 229 l~~~~C~~C~~~~~ 242 (354)
...++|..||+.|.
T Consensus 153 ~~~~~C~~CG~~~~ 166 (191)
T 1lko_A 153 ATKWRCRNCGYVHE 166 (191)
T ss_dssp EEEEEETTTCCEEE
T ss_pred CceEEECCCCCEee
Confidence 34799999998874
No 17
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=75.49 E-value=1.5 Score=37.60 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccC
Q 018563 109 IEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
..++++++++|.+|++.||+.|.|+.
T Consensus 21 ~~~v~~aa~~L~~AkrPvil~G~g~~ 46 (170)
T 3cf4_G 21 AVSPEMAAKIISKAKRPLLMVGTLAL 46 (170)
T ss_dssp ECCHHHHHHHHHHCSSEEEEECSTTC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 34589999999999999999999975
No 18
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=69.93 E-value=4.4 Score=31.30 Aligned_cols=30 Identities=27% Similarity=0.720 Sum_probs=23.2
Q ss_pred CCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhc
Q 018563 298 IPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKE 333 (354)
Q Consensus 298 iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~ 333 (354)
+-+||+||.. |+|-.+|.+..+...+.+.+
T Consensus 51 ~FkCP~CgEE------FyG~~Lp~~EaeKVFELLNd 80 (95)
T 2k5c_A 51 VFKCPVCGEE------FYGKTLPRREAEKVFELLND 80 (95)
T ss_dssp EEECTTTCCE------EETTSSCTTTHHHHHHHHHS
T ss_pred hhcCCCccHH------HhcccCChHHHHHHHHHHHH
Confidence 4689999986 78999998776666666653
No 19
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=66.92 E-value=2.8 Score=37.39 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.9
Q ss_pred cceeeeCCCCccc
Q 018563 229 VYTVVCLDCGFSF 241 (354)
Q Consensus 229 l~~~~C~~C~~~~ 241 (354)
...++|..||+.|
T Consensus 169 ~~~~~C~~CG~i~ 181 (202)
T 1yuz_A 169 DKFHLCPICGYIH 181 (202)
T ss_dssp CCEEECSSSCCEE
T ss_pred CcEEEECCCCCEE
Confidence 4579999999886
No 20
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=65.51 E-value=4.9 Score=32.57 Aligned_cols=18 Identities=22% Similarity=0.600 Sum_probs=12.2
Q ss_pred EeecccceeeeCCCCccc
Q 018563 224 ELHGTVYTVVCLDCGFSF 241 (354)
Q Consensus 224 ELHGsl~~~~C~~C~~~~ 241 (354)
++.-.-..++|.+|++.+
T Consensus 66 ~i~~~p~~~~C~~CG~~~ 83 (119)
T 2kdx_A 66 DIVDEKVELECKDCSHVF 83 (119)
T ss_dssp EEEEECCEEECSSSSCEE
T ss_pred EEEeccceEEcCCCCCEE
Confidence 333333468999999876
No 21
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=64.76 E-value=6.3 Score=27.00 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=11.5
Q ss_pred cceeeeCCCCcccc
Q 018563 229 VYTVVCLDCGFSFC 242 (354)
Q Consensus 229 l~~~~C~~C~~~~~ 242 (354)
+...+|..|++.|+
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 45689999999885
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.53 E-value=5.6 Score=36.41 Aligned_cols=20 Identities=10% Similarity=0.287 Sum_probs=14.6
Q ss_pred ceEEeecccceeeeCCCCcccchh
Q 018563 221 NPLELHGTVYTVVCLDCGFSFCRD 244 (354)
Q Consensus 221 kviELHGsl~~~~C~~C~~~~~~~ 244 (354)
-|+.++|. .|..|+-..+-.
T Consensus 192 avv~v~~~----~C~GC~~~lppq 211 (256)
T 3na7_A 192 SIVTIKKQ----ACGGCFIRLNDK 211 (256)
T ss_dssp SEEECBTT----BCTTTCCBCCHH
T ss_pred eEEEeeCC----ccCCCCeeeCHH
Confidence 46787775 799999775543
No 23
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=63.29 E-value=2.5 Score=35.48 Aligned_cols=22 Identities=14% Similarity=0.419 Sum_probs=15.4
Q ss_pred EEeecccceeeeCCCCcccchh
Q 018563 223 LELHGTVYTVVCLDCGFSFCRD 244 (354)
Q Consensus 223 iELHGsl~~~~C~~C~~~~~~~ 244 (354)
+++.---..+.|.+|++.+...
T Consensus 62 L~i~~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 62 IEFVEEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp EEEEEECCEEEETTTCCEEEGG
T ss_pred EEEEecCCcEECCCCCCEEecc
Confidence 4444445578999999987543
No 24
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=62.42 E-value=7.4 Score=27.28 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=10.9
Q ss_pred ceeeeCCCCcccc
Q 018563 230 YTVVCLDCGFSFC 242 (354)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (354)
...+|..|++.|+
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 4689999999885
No 25
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=61.62 E-value=11 Score=26.59 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=11.3
Q ss_pred ceeeeCCCCcccch
Q 018563 230 YTVVCLDCGFSFCR 243 (354)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (354)
...+|..|++.|+-
T Consensus 2 ~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 2 KKYTCTVCGYIYDP 15 (54)
T ss_dssp CCEEETTTCCEECT
T ss_pred CceECCCCCeEECC
Confidence 46799999998853
No 26
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=61.14 E-value=7.4 Score=29.90 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=12.3
Q ss_pred cceeeeCCCCcccch
Q 018563 229 VYTVVCLDCGFSFCR 243 (354)
Q Consensus 229 l~~~~C~~C~~~~~~ 243 (354)
...++|..|++.|+-
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 567999999998853
No 27
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=61.08 E-value=6.6 Score=27.85 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=11.4
Q ss_pred ceeeeCCCCcccch
Q 018563 230 YTVVCLDCGFSFCR 243 (354)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (354)
...+|..|++.|+-
T Consensus 2 ~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 2 RKWQCVVCGFIYDE 15 (55)
T ss_dssp CEEEETTTCCEEET
T ss_pred CcEEeCCCCeEECC
Confidence 46899999998853
No 28
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=58.31 E-value=4.3 Score=35.21 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=10.4
Q ss_pred ceeeeCCCCcccc
Q 018563 230 YTVVCLDCGFSFC 242 (354)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (354)
..++|..||+.+.
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 4688999998873
No 29
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=58.29 E-value=5.7 Score=29.65 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=8.5
Q ss_pred eeeeCCCCccc
Q 018563 231 TVVCLDCGFSF 241 (354)
Q Consensus 231 ~~~C~~C~~~~ 241 (354)
...|..|+..+
T Consensus 28 ~Y~C~~CG~~~ 38 (70)
T 1twf_L 28 KYICAECSSKL 38 (70)
T ss_dssp CEECSSSCCEE
T ss_pred EEECCCCCCcc
Confidence 45799999764
No 30
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=57.92 E-value=6.6 Score=30.60 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=12.4
Q ss_pred cceeeeCCCCcccch
Q 018563 229 VYTVVCLDCGFSFCR 243 (354)
Q Consensus 229 l~~~~C~~C~~~~~~ 243 (354)
+..++|..|++.|+-
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 567999999998853
No 31
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=55.49 E-value=9.1 Score=28.49 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=12.4
Q ss_pred ccceeeeCCCCcccc
Q 018563 228 TVYTVVCLDCGFSFC 242 (354)
Q Consensus 228 sl~~~~C~~C~~~~~ 242 (354)
.+..++|..|++.|+
T Consensus 4 ~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 4 DEGKYECEACGYIYE 18 (70)
T ss_dssp CSSCEEETTTCCEEC
T ss_pred CCceEEeCCCCEEEc
Confidence 456789999999885
No 32
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=53.50 E-value=11 Score=26.43 Aligned_cols=13 Identities=23% Similarity=0.774 Sum_probs=10.7
Q ss_pred eeeeCCCCcccch
Q 018563 231 TVVCLDCGFSFCR 243 (354)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (354)
..+|..|++.|+-
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5789999998853
No 33
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=48.65 E-value=8.8 Score=26.51 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=9.3
Q ss_pred eeeeCCCCcccchh
Q 018563 231 TVVCLDCGFSFCRD 244 (354)
Q Consensus 231 ~~~C~~C~~~~~~~ 244 (354)
...|..|++.++.+
T Consensus 3 iY~C~rCg~~fs~~ 16 (48)
T 4ayb_P 3 VYRCGKCWKTFTDE 16 (48)
T ss_dssp --CCCCTTTTCCCC
T ss_pred EEEeeccCCCccHH
Confidence 35799999887543
No 34
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.51 E-value=18 Score=30.09 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=36.2
Q ss_pred cCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCceEEe--ecccceeeeCCCCcccch
Q 018563 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCR 243 (354)
Q Consensus 184 ~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~kviEL--HGsl~~~~C~~C~~~~~~ 243 (354)
...+...|+.|..|++.|.+..+-..|- ...+++ +..-+.++|..||+..+.
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~--------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 111 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKS--------GRRYEIAAKEHHDHIICLHCGKIIEF 111 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTT--------EEEEEESCSCCCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCC--------ceEEEecCCCCceEEEECCCCCEEEe
Confidence 4567789999999999999877654441 123443 122356899999998654
No 35
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.71 E-value=26 Score=28.51 Aligned_cols=52 Identities=23% Similarity=0.221 Sum_probs=34.7
Q ss_pred cCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCceEEee--cccceeeeCCCCcccch
Q 018563 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (354)
Q Consensus 184 ~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~kviELH--Gsl~~~~C~~C~~~~~~ 243 (354)
...+...|+.|..|++.|.+..+-..| |...+++. ..-+.++|.+|++..+.
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~~H~HliC~~Cg~v~~~ 103 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFDG--------GHAVFELADSGHHDHMVCVDTGEVIEF 103 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSS--------SSCEEEESSSCCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--------CceEEEeCCCCcceEEEECCCCCEEEe
Confidence 456678999999999999876553221 22334442 12345899999998754
No 36
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=36.30 E-value=14 Score=31.19 Aligned_cols=14 Identities=29% Similarity=0.683 Sum_probs=9.5
Q ss_pred ccceeeeCCCCccc
Q 018563 228 TVYTVVCLDCGFSF 241 (354)
Q Consensus 228 sl~~~~C~~C~~~~ 241 (354)
.+...+|.+|++.+
T Consensus 44 ~L~~~rC~~CG~~~ 57 (145)
T 2gnr_A 44 KIIGSKCSKCGRIF 57 (145)
T ss_dssp CCEEEECTTTCCEE
T ss_pred EEEEEEECCCCcEE
Confidence 33456899998753
No 37
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=34.28 E-value=20 Score=28.80 Aligned_cols=11 Identities=45% Similarity=1.198 Sum_probs=9.2
Q ss_pred eeeeCCCCccc
Q 018563 231 TVVCLDCGFSF 241 (354)
Q Consensus 231 ~~~C~~C~~~~ 241 (354)
...|-+||..+
T Consensus 67 p~~C~~CG~~F 77 (105)
T 2gmg_A 67 PAQCRKCGFVF 77 (105)
T ss_dssp CCBBTTTCCBC
T ss_pred CcChhhCcCee
Confidence 57899999876
No 38
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=33.17 E-value=33 Score=34.35 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018563 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+++++++++|.+|++.||+.|.|.+
T Consensus 186 ~~~~~i~~~~~~l~~A~rpvIl~G~g~~ 213 (549)
T 3eya_A 186 PEEEELRKLAQLLRYSSNIALMCGSGCA 213 (549)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEEECGGGT
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCch
Confidence 4568899999999999999999999975
No 39
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=32.14 E-value=26 Score=25.57 Aligned_cols=10 Identities=20% Similarity=0.767 Sum_probs=7.8
Q ss_pred CCCCCCCCCe
Q 018563 298 IPTCQKCNGV 307 (354)
Q Consensus 298 iP~Cp~CgG~ 307 (354)
.-+||.||..
T Consensus 38 ~iRC~~CG~R 47 (63)
T 3h0g_L 38 VIRCRECGHR 47 (63)
T ss_dssp CCCCSSSCCC
T ss_pred ceECCCCCcE
Confidence 3589999973
No 40
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.58 E-value=37 Score=28.13 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=34.7
Q ss_pred cCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCceEEee--cccceeeeCCCCcccch
Q 018563 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (354)
Q Consensus 184 ~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~kviELH--Gsl~~~~C~~C~~~~~~ 243 (354)
...+...|+.|..|++.|.+..+-..| |...+++. ..-+.++|..|++..+.
T Consensus 49 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (150)
T 2w57_A 49 EIGLATVYRVLNQFDDAGIVTRHHFEG--------GKSVFELSTQHHHDHLVCLDCGEVIEF 102 (150)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECGG--------GCEEEEECCSSCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--------CceEEEecCCCceeEEEECCCCCEEEe
Confidence 456678999999999999876653221 22334442 22345899999988654
No 41
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=31.29 E-value=37 Score=34.52 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018563 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+..+++++++++|.+|++.||+.|.|.+
T Consensus 196 ~~~~~~i~~~~~~l~~A~rPvIl~G~g~~ 224 (603)
T 4feg_A 196 EPDVQAVTRLTQTLLAAERPLIYYGIGAR 224 (603)
T ss_dssp BCCHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEECCCch
Confidence 35578899999999999999999999984
No 42
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.04 E-value=55 Score=26.26 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=35.5
Q ss_pred cCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCceEEee--cccceeeeCCCCcccch
Q 018563 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (354)
Q Consensus 184 ~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~kviELH--Gsl~~~~C~~C~~~~~~ 243 (354)
...+...|+.|..|++.|.+..+-..| |...+++. +.-+.++|..|++..+.
T Consensus 42 ~is~~TVYR~L~~L~e~Glv~~~~~~~--------~~~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 42 NIGLTTVYRTLQSMASSGLVDTLHTDT--------GESVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp CCCHHHHHHHHHHHHTTTSEEEEECTT--------SCEEEEECCSSSCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCCEEEEEeCC--------CceEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 455668999999999999876654333 22335541 23456899999987654
No 43
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=29.91 E-value=15 Score=29.02 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=12.0
Q ss_pred CcEEEEECCccCcc
Q 018563 123 AKLIVLTGAGISTE 136 (354)
Q Consensus 123 k~iVVlTGAGISaa 136 (354)
++|++..|+|+|++
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 57999999999865
No 44
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=29.83 E-value=22 Score=26.28 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=12.5
Q ss_pred cccccceeEeeeccc
Q 018563 10 FNQKNTTMLLRLPFF 24 (354)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (354)
.|.+|||...||||-
T Consensus 1 Mn~~NttVyVRlPg~ 15 (69)
T 4hpq_A 1 MNSENTIVYVRVAGR 15 (69)
T ss_dssp CCSSSCEEEEECSSC
T ss_pred CCCCCeEEEEEecCC
Confidence 378899999999973
No 45
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=29.59 E-value=21 Score=29.96 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=7.9
Q ss_pred eeeeCCCCccc
Q 018563 231 TVVCLDCGFSF 241 (354)
Q Consensus 231 ~~~C~~C~~~~ 241 (354)
-.+|.+|++.+
T Consensus 47 ~~rC~~CG~~~ 57 (145)
T 3irb_A 47 GSKCSKCGRIF 57 (145)
T ss_dssp EEECTTTCCEE
T ss_pred EEEeCCCCcEE
Confidence 36788898753
No 46
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=28.07 E-value=18 Score=30.62 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=14.0
Q ss_pred HHhhcCCEEEEEccCC
Q 018563 329 EAAKECDAFLVLGSSL 344 (354)
Q Consensus 329 ~~~~~aDllLVvGTSL 344 (354)
+.+++||++|++||.+
T Consensus 103 ~~~~~aDlvl~iG~~~ 118 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKK 118 (170)
T ss_dssp SSSCCCSEEEEESCCH
T ss_pred HHhhcCCEEEEECCcc
Confidence 4568999999999988
No 47
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=27.61 E-value=43 Score=33.68 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018563 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..++++++++.|.+|++.||+.|.|..
T Consensus 198 ~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 225 (568)
T 2c31_A 198 PAEDAIARAADLIKNAKRPVIMLGKGAA 225 (568)
T ss_dssp CCHHHHHHHHHHHHTCSSEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcccc
Confidence 4568899999999999999999999975
No 48
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=26.58 E-value=20 Score=30.99 Aligned_cols=14 Identities=36% Similarity=0.461 Sum_probs=0.0
Q ss_pred hhcCCEEEEEccCC
Q 018563 331 AKECDAFLVLGSSL 344 (354)
Q Consensus 331 ~~~aDllLVvGTSL 344 (354)
+++|||+|+||+.+
T Consensus 106 ~~~aDLvI~iG~rf 119 (174)
T 1ytl_A 106 QGNYDLVLMLGSIY 119 (174)
T ss_dssp SCCCSEEEEESCCH
T ss_pred cCCCCEEEEECCcC
No 49
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.51 E-value=24 Score=27.08 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=7.8
Q ss_pred eeeeCCCCcccc
Q 018563 231 TVVCLDCGFSFC 242 (354)
Q Consensus 231 ~~~C~~C~~~~~ 242 (354)
..+|..|+..+.
T Consensus 18 ~~~C~~C~~~~~ 29 (81)
T 2jrp_A 18 TAHCETCAKDFS 29 (81)
T ss_dssp EEECTTTCCEEE
T ss_pred ceECccccccCC
Confidence 456777776653
No 50
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.28 E-value=42 Score=27.55 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=34.4
Q ss_pred cCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCceEEeec-ccceeeeCCCCcccch
Q 018563 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHG-TVYTVVCLDCGFSFCR 243 (354)
Q Consensus 184 ~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~kviELHG-sl~~~~C~~C~~~~~~ 243 (354)
...+...|+.|..|++.|.+..+-..| |...+++.+ .-+.++|..||+..+.
T Consensus 53 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~H~HliC~~Cg~v~~~ 105 (145)
T 2fe3_A 53 NMSVATVYNNLRVFRESGLVKELTYGD--------ASSRFDFVTSDHYHAICENCGKIVDF 105 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTT--------SCCEEEECCCCEEEEEETTTCCEEEC
T ss_pred CCChhhHHHHHHHHHHCCCEEEEeeCC--------CceEEECCCCCcceEEECCCCCEEEe
Confidence 456678999999999999877654333 112233321 1235899999988654
No 51
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.06 E-value=32 Score=32.60 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.6
Q ss_pred cccceeeeCCCCcccch
Q 018563 227 GTVYTVVCLDCGFSFCR 243 (354)
Q Consensus 227 Gsl~~~~C~~C~~~~~~ 243 (354)
+..++++|+-|+..|..
T Consensus 204 ~G~R~l~Cs~C~t~W~~ 220 (309)
T 2fiy_A 204 TGLRYLSCSLCACEWHY 220 (309)
T ss_dssp CCEEEEEETTTCCEEEC
T ss_pred CCcEEEEeCCCCCEEee
Confidence 56778999999988643
No 52
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.88 E-value=49 Score=27.02 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=34.7
Q ss_pred cCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCceEEee---cccceeeeCCCCcccchh
Q 018563 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH---GTVYTVVCLDCGFSFCRD 244 (354)
Q Consensus 184 ~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~kviELH---Gsl~~~~C~~C~~~~~~~ 244 (354)
...+...|+.|..|++.|.+..+-..+ | ...+++- +.-+.++|..|++..+.+
T Consensus 45 ~is~aTVYR~L~~L~e~Glv~~~~~~~--g------~~~Y~~~~~~~~H~HliC~~Cg~v~~~~ 100 (139)
T 3mwm_A 45 AVGLTTVYRTLQSLADAGEVDVLRTAE--G------ESVYRRCSTGDHHHHLVCRACGKAVEVE 100 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEECTT--S------CEEEECCSCSSCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCC--C------ceEEEECCCCCCccEEEECCCCCEeecc
Confidence 456678899999999999887664322 1 1223321 123458999999986543
No 53
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.51 E-value=30 Score=28.55 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=34.6
Q ss_pred cCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCceEEee--cccceeeeCCCCcccch
Q 018563 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (354)
Q Consensus 184 ~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~kviELH--Gsl~~~~C~~C~~~~~~ 243 (354)
...+...|+.|..|++.|.+..+-..| |...+++. ..-+.++|..||+..+.
T Consensus 49 ~is~~TVYR~L~~L~e~Glv~~i~~~~--------~~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (145)
T 3eyy_A 49 GINISTVYRTLELLEELGLVSHAHLGH--------GAPTYHLADRHHHIHLVCRDCTNVIEA 102 (145)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEECGG--------GCEEEEETTSCCSEEEEESSSSCEEEE
T ss_pred CCCHhHHHHHHHHHHHCCcEEEEEeCC--------CceEEEeCCCCCceEEEECCCCCEEEe
Confidence 345668999999999999887664322 11224432 22345899999998654
No 54
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=24.89 E-value=53 Score=33.18 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018563 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+++++++++|.+|++.||+.|.|..
T Consensus 199 ~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 226 (590)
T 1ybh_A 199 PEDSHLEQIVRLISESKKPVLYVGGGCL 226 (590)
T ss_dssp CCHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECcccc
Confidence 3568899999999999999999999975
No 55
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=23.86 E-value=40 Score=29.40 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCEEEEEccCCchhcccc
Q 018563 324 ADKAMEAAKECDAFLVLGSSLMTMSAYR 351 (354)
Q Consensus 324 ~~~A~~~~~~aDllLVvGTSL~V~pA~~ 351 (354)
+++....+.++|+.||||-.-.|-||++
T Consensus 89 MdeIN~df~~tDv~lVIGANDvvNpaA~ 116 (180)
T 1pno_A 89 LEEINSSFQTADVAFVIGANDVTNPAAK 116 (180)
T ss_dssp HHHHGGGGGGCSEEEEESCCGGGCGGGT
T ss_pred HHHHhhhhhhcCEEEEeccccccCchhc
Confidence 5677778899999999999999999986
No 56
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.24 E-value=28 Score=27.62 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=6.9
Q ss_pred CCCCCCCCCee
Q 018563 298 IPTCQKCNGVL 308 (354)
Q Consensus 298 iP~Cp~CgG~L 308 (354)
.+.||.|+.+|
T Consensus 61 ~a~CPdC~q~L 71 (101)
T 2jne_A 61 KALCPDCHQPL 71 (101)
T ss_dssp EEECTTTCSBC
T ss_pred cccCcchhhHH
Confidence 35677776654
No 57
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=23.22 E-value=32 Score=29.50 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCcEEEEECCccCcc
Q 018563 113 NQLYQFFDNSAKLIVLTGAGISTE 136 (354)
Q Consensus 113 ~~La~~l~~ak~iVVlTGAGISaa 136 (354)
+++.++.++++.-||++|||+++.
T Consensus 41 ~~~~~~~~~a~~~ViIa~AG~aa~ 64 (157)
T 2ywx_A 41 ELVEEIVKNSKADVFIAIAGLAAH 64 (157)
T ss_dssp HHHHHHHHHCCCSEEEEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEEcCchhh
Confidence 455666777766899999999744
No 58
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=23.21 E-value=45 Score=28.36 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCccC
Q 018563 109 IEDINQLYQFFDNSAKLIVLTGAGISTEC 137 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaaS 137 (354)
.++++++++.|.+++.-|++.|.|-|...
T Consensus 31 ~~~i~~~~~~i~~a~~~I~i~G~G~S~~~ 59 (201)
T 3fxa_A 31 EEALVKTVEKIAECTGKIVVAGCGTSGVA 59 (201)
T ss_dssp HHHHHHHHHHHHHCSSCEEEECCTHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHH
Confidence 46899999999999756778899988654
No 59
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=22.48 E-value=61 Score=32.59 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018563 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+++++++++|.+|++.||+.|.|..
T Consensus 192 ~~~~~i~~~~~~l~~a~rpvil~G~g~~ 219 (566)
T 1ozh_A 192 APDDAIDQVAKLIAQAKNPIFLLGLMAS 219 (566)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGG
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 4567899999999999999999999974
No 60
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=22.46 E-value=77 Score=33.70 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEc
Q 018563 299 PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLG 341 (354)
Q Consensus 299 P~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvG 341 (354)
-.||.||=.| -+.+..-.++.+++|.+.+++=.++.+=|
T Consensus 184 ~aC~~CGP~l----~l~~~~~~~~~i~~aa~~L~~G~IVa~pt 222 (761)
T 3vth_A 184 VACFDCGPSL----SFVGEGCFDDEIKCVAKALKEGKIVAIKG 222 (761)
T ss_dssp CCCTTTSCCE----EEESSCCCSCHHHHHHHHHHTTCCEEEEC
T ss_pred CcCCccCCee----EEeCCCCchHHHHHHHHHHHcCCEEEEEC
Confidence 4799999543 34332213445788888887666665543
No 61
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=22.19 E-value=16 Score=32.56 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=33.2
Q ss_pred eEEEcCCCCCHH---HHHHHHHHhhcCCEEEEEccCCchhcccc
Q 018563 311 DVVFFGDNVPKD---RADKAMEAAKECDAFLVLGSSLMTMSAYR 351 (354)
Q Consensus 311 ~VVlFGE~lp~~---~~~~A~~~~~~aDllLVvGTSL~V~pA~~ 351 (354)
||+|=.-.+|-+ .+++..+.+.++|+.||||-.-.|-||++
T Consensus 96 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~ 139 (203)
T 2fsv_C 96 NVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAK 139 (203)
T ss_dssp HHHHHHTTCCGGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGT
T ss_pred cEEEEEecCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhh
Confidence 666655566665 36777788889999999999999999986
No 62
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.53 E-value=75 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCccCC
Q 018563 109 IEDINQLYQFFDNSAKLIVLTGAGISTECG 138 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaaSG 138 (354)
.++++++++.|.+++ -|++.|.|-|...+
T Consensus 26 ~~~l~~~~~~i~~a~-~I~i~G~G~S~~~a 54 (187)
T 3sho_A 26 PEAIEAAVEAICRAD-HVIVVGMGFSAAVA 54 (187)
T ss_dssp HHHHHHHHHHHHHCS-EEEEECCGGGHHHH
T ss_pred HHHHHHHHHHHHhCC-EEEEEecCchHHHH
Confidence 578999999999997 56778999886544
No 63
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=21.17 E-value=16 Score=32.69 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=33.2
Q ss_pred eEEEcCCCCCHH---HHHHHHHHhhcCCEEEEEccCCchhcccc
Q 018563 311 DVVFFGDNVPKD---RADKAMEAAKECDAFLVLGSSLMTMSAYR 351 (354)
Q Consensus 311 ~VVlFGE~lp~~---~~~~A~~~~~~aDllLVvGTSL~V~pA~~ 351 (354)
||+|=.-.+|-+ .+++..+.+.++|+.||||-.-.|-||++
T Consensus 95 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~ 138 (207)
T 1djl_A 95 NVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQ 138 (207)
T ss_dssp HHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHH
T ss_pred cEEEEEeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCCccc
Confidence 666665566665 36777888899999999999999999875
No 64
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=21.17 E-value=51 Score=33.06 Aligned_cols=33 Identities=18% Similarity=-0.021 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCcEEEEECCccCccCCCCCc
Q 018563 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDY 142 (354)
Q Consensus 110 ~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDF 142 (354)
+.+..+++...++-=+|++||.--+..-|-..|
T Consensus 85 N~~~gia~A~~d~vPll~itG~~~~~~~g~~~~ 117 (556)
T 3hww_A 85 NLYPALIEAGLTGEKLILLTADRPPELIDCGAN 117 (556)
T ss_dssp TTHHHHHHHHHHCCCEEEEEEECCGGGSSSSCT
T ss_pred hhhHHHHHHHHhCCCeEEEeCCCCHHHhccCCC
Confidence 456677777777788889988765554443333
No 65
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=20.93 E-value=39 Score=29.58 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCCEEEEEccCCchhcccc
Q 018563 324 ADKAMEAAKECDAFLVLGSSLMTMSAYR 351 (354)
Q Consensus 324 ~~~A~~~~~~aDllLVvGTSL~V~pA~~ 351 (354)
+++....+.++|+.||||-.-.|-||++
T Consensus 88 MdeIN~df~~tDv~lVIGANDvVNPaA~ 115 (184)
T 1d4o_A 88 MDEINHDFPDTDLVLVIGANDTVNSAAQ 115 (184)
T ss_dssp HHHHGGGGGGCSEEEEESCSGGGCTHHH
T ss_pred HHHHhhhhhhcCEEEEecCCccCCCccc
Confidence 5677778889999999999999999875
No 66
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=20.42 E-value=45 Score=33.45 Aligned_cols=28 Identities=11% Similarity=0.422 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018563 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+++++++++|.+|++.||+.|.|..
T Consensus 196 ~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 223 (564)
T 2q28_A 196 PCPKSVTSAISLLAKAERPLIILGKGAA 223 (564)
T ss_dssp ECHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcccc
Confidence 3467899999999999999999999975
Done!