Query 018564
Match_columns 354
No_of_seqs 259 out of 1084
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 10:04:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 1.7E-39 3.8E-44 300.3 11.7 192 156-353 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.2 3.7E-12 8E-17 125.8 2.5 52 302-353 288-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.2E-10 2.6E-15 84.6 2.0 45 304-348 2-50 (50)
4 KOG4172 Predicted E3 ubiquitin 98.9 8.8E-11 1.9E-15 88.6 -3.8 51 304-354 7-62 (62)
5 KOG4275 Predicted E3 ubiquitin 98.8 3.1E-10 6.6E-15 110.1 -1.6 50 304-353 300-349 (350)
6 KOG1571 Predicted E3 ubiquitin 98.8 1.3E-09 2.8E-14 108.0 0.6 52 303-354 304-355 (355)
7 KOG0978 E3 ubiquitin ligase in 98.1 3.2E-05 7E-10 83.1 12.2 128 201-352 563-697 (698)
8 KOG1785 Tyrosine kinase negati 98.0 1.4E-06 3E-11 88.1 1.1 54 299-353 364-423 (563)
9 PF14634 zf-RING_5: zinc-RING 97.5 7E-05 1.5E-09 53.2 2.1 36 307-343 2-44 (44)
10 KOG0823 Predicted E3 ubiquitin 97.4 0.00011 2.3E-09 69.9 3.2 50 302-352 45-103 (230)
11 PLN03208 E3 ubiquitin-protein 97.4 0.00015 3.2E-09 67.4 3.8 48 304-352 18-87 (193)
12 KOG0317 Predicted E3 ubiquitin 97.4 0.00011 2.5E-09 71.7 2.8 51 301-352 236-290 (293)
13 PF13923 zf-C3HC4_2: Zinc fing 97.3 0.00012 2.5E-09 50.6 1.9 34 307-341 1-39 (39)
14 PHA02929 N1R/p28-like protein; 97.3 0.00021 4.5E-09 68.4 4.0 47 304-351 174-232 (238)
15 smart00184 RING Ring finger. E 97.2 0.00028 6.1E-09 45.9 2.4 34 307-341 1-39 (39)
16 cd00162 RING RING-finger (Real 97.0 0.00064 1.4E-08 45.8 2.8 39 306-345 1-45 (45)
17 PF14447 Prok-RING_4: Prokaryo 96.9 0.00043 9.3E-09 52.5 1.7 43 304-347 7-51 (55)
18 PF13639 zf-RING_2: Ring finge 96.9 0.00052 1.1E-08 48.3 1.9 36 306-342 2-44 (44)
19 KOG0320 Predicted E3 ubiquitin 96.7 0.00065 1.4E-08 62.6 1.5 49 304-353 131-187 (187)
20 PF00097 zf-C3HC4: Zinc finger 96.5 0.0017 3.6E-08 44.7 1.9 34 307-341 1-41 (41)
21 KOG2164 Predicted E3 ubiquitin 96.4 0.0019 4.1E-08 67.4 2.9 50 302-352 184-244 (513)
22 PHA02926 zinc finger-like prot 96.3 0.0014 3.1E-08 62.4 0.9 46 303-349 169-233 (242)
23 TIGR00599 rad18 DNA repair pro 96.3 0.0022 4.8E-08 65.5 2.2 44 303-347 25-72 (397)
24 KOG2177 Predicted E3 ubiquitin 96.0 0.0022 4.7E-08 57.5 0.7 39 304-343 13-55 (386)
25 COG5574 PEX10 RING-finger-cont 96.0 0.0041 8.9E-08 60.4 2.2 43 302-345 213-261 (271)
26 PF15227 zf-C3HC4_4: zinc fing 95.8 0.0046 9.9E-08 43.9 1.3 34 307-341 1-42 (42)
27 PF13445 zf-RING_UBOX: RING-ty 95.7 0.0035 7.6E-08 45.1 0.6 27 307-335 1-31 (43)
28 smart00504 Ubox Modified RING 95.7 0.0087 1.9E-07 44.4 2.5 42 305-347 2-47 (63)
29 KOG4692 Predicted E3 ubiquitin 95.5 0.0056 1.2E-07 61.8 1.2 45 302-347 420-468 (489)
30 COG5236 Uncharacterized conser 95.1 0.012 2.5E-07 59.5 2.0 47 302-349 59-111 (493)
31 COG5540 RING-finger-containing 94.5 0.029 6.3E-07 55.8 3.2 42 304-346 323-372 (374)
32 COG5432 RAD18 RING-finger-cont 94.2 0.024 5.2E-07 56.1 1.8 41 304-345 25-69 (391)
33 KOG2879 Predicted E3 ubiquitin 94.0 0.041 8.9E-07 54.0 3.0 45 301-346 236-287 (298)
34 COG5243 HRD1 HRD ubiquitin lig 94.0 0.029 6.3E-07 57.2 2.1 44 301-345 284-344 (491)
35 KOG0802 E3 ubiquitin ligase [P 93.8 0.026 5.6E-07 59.5 1.2 41 304-345 291-340 (543)
36 KOG0287 Postreplication repair 93.0 0.033 7.2E-07 56.1 0.5 44 304-348 23-70 (442)
37 PF12678 zf-rbx1: RING-H2 zinc 92.0 0.13 2.7E-06 40.5 2.6 27 315-342 43-73 (73)
38 KOG1039 Predicted E3 ubiquitin 91.0 0.11 2.5E-06 52.3 1.6 46 303-349 160-224 (344)
39 PF04641 Rtf2: Rtf2 RING-finge 90.8 0.22 4.8E-06 47.8 3.3 46 302-348 111-163 (260)
40 PF14835 zf-RING_6: zf-RING of 90.5 0.15 3.3E-06 40.0 1.6 41 304-345 7-50 (65)
41 KOG2113 Predicted RNA binding 89.7 0.27 5.9E-06 49.3 3.0 49 304-352 343-393 (394)
42 KOG4628 Predicted E3 ubiquitin 89.2 0.24 5.3E-06 50.1 2.3 43 305-348 230-280 (348)
43 KOG1814 Predicted E3 ubiquitin 87.7 0.28 6.1E-06 50.6 1.7 42 304-346 184-240 (445)
44 PF12240 Angiomotin_C: Angiomo 87.5 16 0.00034 34.8 12.9 83 164-255 66-166 (205)
45 PF15619 Lebercilin: Ciliary p 87.3 25 0.00054 32.9 14.1 93 159-257 50-150 (194)
46 PF09726 Macoilin: Transmembra 86.7 22 0.00048 39.3 15.5 52 204-255 545-596 (697)
47 PF00038 Filament: Intermediat 86.5 32 0.0007 33.2 16.8 95 161-259 182-282 (312)
48 KOG3039 Uncharacterized conser 86.2 0.51 1.1E-05 46.1 2.5 43 304-347 221-271 (303)
49 PF04216 FdhE: Protein involve 85.9 1.5 3.3E-05 42.5 5.6 48 304-352 172-228 (290)
50 KOG3002 Zn finger protein [Gen 85.3 0.45 9.7E-06 47.2 1.7 42 304-347 48-92 (299)
51 PF04710 Pellino: Pellino; In 85.3 0.26 5.7E-06 50.6 0.0 41 313-353 356-411 (416)
52 KOG4159 Predicted E3 ubiquitin 85.2 0.4 8.7E-06 49.3 1.3 45 302-347 82-130 (398)
53 KOG0804 Cytoplasmic Zn-finger 85.1 39 0.00085 35.8 15.4 103 158-260 327-449 (493)
54 KOG1813 Predicted E3 ubiquitin 84.6 0.36 7.7E-06 48.0 0.6 46 305-351 242-291 (313)
55 PF04564 U-box: U-box domain; 84.1 1 2.2E-05 35.1 2.9 44 303-347 3-51 (73)
56 KOG3842 Adaptor protein Pellin 83.4 0.97 2.1E-05 45.6 3.0 52 301-352 338-423 (429)
57 COG5152 Uncharacterized conser 83.3 0.37 8.1E-06 45.7 0.1 46 305-351 197-246 (259)
58 KOG1103 Predicted coiled-coil 81.7 30 0.00065 35.8 12.8 40 153-192 136-185 (561)
59 KOG2932 E3 ubiquitin ligase in 80.5 0.68 1.5E-05 46.5 0.8 42 305-347 91-135 (389)
60 KOG0828 Predicted E3 ubiquitin 79.8 0.75 1.6E-05 48.7 0.8 43 304-347 571-635 (636)
61 KOG0825 PHD Zn-finger protein 76.1 0.84 1.8E-05 50.7 -0.0 45 305-350 124-175 (1134)
62 KOG0971 Microtubule-associated 76.0 44 0.00094 38.4 12.8 49 210-258 447-502 (1243)
63 KOG3091 Nuclear pore complex, 74.4 22 0.00048 37.9 9.7 21 212-232 377-397 (508)
64 KOG1001 Helicase-like transcri 73.7 1.4 2.9E-05 48.4 0.8 40 305-346 455-500 (674)
65 PF14362 DUF4407: Domain of un 73.5 92 0.002 30.2 13.9 58 164-232 106-163 (301)
66 PF11559 ADIP: Afadin- and alp 73.3 40 0.00086 29.5 9.8 56 202-257 57-112 (151)
67 PF13815 Dzip-like_N: Iguana/D 73.0 16 0.00035 31.1 7.1 42 193-234 76-117 (118)
68 PF05290 Baculo_IE-1: Baculovi 72.0 1.5 3.2E-05 39.2 0.5 44 305-349 81-135 (140)
69 KOG3859 Septins (P-loop GTPase 71.6 43 0.00094 34.0 10.5 21 220-240 379-399 (406)
70 PF01166 TSC22: TSC-22/dip/bun 71.0 5.4 0.00012 30.9 3.2 31 211-241 14-44 (59)
71 KOG0288 WD40 repeat protein Ti 70.4 1.5E+02 0.0032 31.3 14.7 70 159-232 2-76 (459)
72 PF00804 Syntaxin: Syntaxin; 70.1 51 0.0011 25.8 9.9 84 173-258 13-102 (103)
73 PF11180 DUF2968: Protein of u 69.7 1E+02 0.0022 29.2 12.0 28 154-181 102-130 (192)
74 PF12329 TMF_DNA_bd: TATA elem 69.2 56 0.0012 25.9 9.2 15 203-217 4-18 (74)
75 KOG2113 Predicted RNA binding 68.6 1.9 4E-05 43.6 0.4 48 304-351 136-188 (394)
76 COG5220 TFB3 Cdk activating ki 68.4 1.5 3.2E-05 42.9 -0.3 39 304-343 10-61 (314)
77 KOG4673 Transcription factor T 68.0 80 0.0017 35.4 12.3 53 201-256 474-526 (961)
78 PF12126 DUF3583: Protein of u 68.0 1.4E+02 0.0031 30.2 13.8 69 157-230 25-100 (324)
79 PF10272 Tmpp129: Putative tra 67.2 4.9 0.00011 41.0 3.1 33 302-345 301-350 (358)
80 smart00338 BRLZ basic region l 66.3 54 0.0012 24.7 9.2 32 206-237 28-59 (65)
81 KOG0980 Actin-binding protein 66.2 2.2E+02 0.0049 32.8 15.5 53 204-256 452-504 (980)
82 KOG1002 Nucleotide excision re 66.0 3.9 8.4E-05 44.0 2.2 41 304-345 536-585 (791)
83 PF03854 zf-P11: P-11 zinc fin 65.6 2.6 5.7E-05 31.5 0.6 42 306-349 4-49 (50)
84 TIGR01837 PHA_granule_1 poly(h 65.2 80 0.0017 27.1 9.7 66 166-231 44-116 (118)
85 KOG4657 Uncharacterized conser 64.2 1.5E+02 0.0032 29.0 15.6 86 153-240 16-101 (246)
86 PF10205 KLRAQ: Predicted coil 63.3 93 0.002 26.6 9.5 59 172-234 10-70 (102)
87 KOG0612 Rho-associated, coiled 63.0 1.5E+02 0.0033 35.1 13.9 90 166-260 464-553 (1317)
88 COG3074 Uncharacterized protei 62.8 71 0.0015 25.9 8.2 31 212-242 40-70 (79)
89 smart00744 RINGv The RING-vari 62.8 6.2 0.00013 28.9 2.1 36 306-342 1-49 (49)
90 PRK10884 SH3 domain-containing 62.4 73 0.0016 30.1 9.7 32 204-235 125-156 (206)
91 PF11544 Spc42p: Spindle pole 62.0 78 0.0017 25.8 8.4 38 202-239 10-47 (76)
92 PF15254 CCDC14: Coiled-coil d 62.0 73 0.0016 36.0 10.8 59 174-232 494-557 (861)
93 PF06785 UPF0242: Uncharacteri 61.7 2E+02 0.0044 29.7 14.5 77 159-236 92-187 (401)
94 PF07412 Geminin: Geminin; In 61.2 39 0.00085 32.0 7.6 48 177-225 106-153 (200)
95 KOG0977 Nuclear envelope prote 61.1 1.2E+02 0.0025 33.1 11.9 68 174-241 113-186 (546)
96 PF09731 Mitofilin: Mitochondr 61.0 2.3E+02 0.005 30.1 16.0 27 220-246 380-406 (582)
97 KOG0311 Predicted E3 ubiquitin 60.3 1.3 2.9E-05 45.0 -2.3 44 303-347 42-91 (381)
98 COG4985 ABC-type phosphate tra 59.9 48 0.001 32.5 8.1 19 153-171 158-176 (289)
99 KOG4421 Uncharacterized conser 59.9 1.2E+02 0.0027 31.8 11.4 50 170-220 126-175 (637)
100 KOG4797 Transcriptional regula 59.9 45 0.00098 29.1 7.1 31 211-241 67-97 (123)
101 PF14570 zf-RING_4: RING/Ubox 59.6 3.7 8.1E-05 30.5 0.5 24 321-345 19-47 (48)
102 PF07888 CALCOCO1: Calcium bin 59.5 2.7E+02 0.0058 30.4 14.9 39 208-246 203-241 (546)
103 TIGR03752 conj_TIGR03752 integ 57.8 99 0.0021 33.0 10.6 33 156-189 63-95 (472)
104 PRK00888 ftsB cell division pr 57.2 42 0.00091 28.3 6.5 36 204-239 27-62 (105)
105 PF04380 BMFP: Membrane fusoge 56.9 79 0.0017 25.3 7.7 20 212-231 58-77 (79)
106 PF00769 ERM: Ezrin/radixin/mo 56.8 43 0.00093 32.2 7.3 48 204-251 12-66 (246)
107 PF15066 CAGE1: Cancer-associa 56.5 2.7E+02 0.0059 29.9 13.4 61 202-262 451-526 (527)
108 PF06005 DUF904: Protein of un 55.6 1E+02 0.0023 24.5 11.5 23 218-240 39-61 (72)
109 PF05121 GvpK: Gas vesicle pro 55.5 70 0.0015 26.7 7.3 38 196-233 27-67 (88)
110 COG2433 Uncharacterized conser 55.3 1E+02 0.0022 34.0 10.3 13 104-116 332-344 (652)
111 PRK04863 mukB cell division pr 54.3 4.2E+02 0.0091 32.3 16.1 33 206-238 364-396 (1486)
112 PF10367 Vps39_2: Vacuolar sor 54.3 7.5 0.00016 31.2 1.5 28 304-332 78-107 (109)
113 TIGR01562 FdhE formate dehydro 54.2 41 0.0009 33.7 6.9 42 304-345 184-234 (305)
114 PF13935 Ead_Ea22: Ead/Ea22-li 54.0 1.1E+02 0.0024 26.8 8.9 71 145-224 65-139 (139)
115 PF08702 Fib_alpha: Fibrinogen 53.8 1.6E+02 0.0036 26.2 11.7 99 154-258 20-130 (146)
116 COG1592 Rubrerythrin [Energy p 53.5 1.8E+02 0.004 26.8 10.5 31 304-350 134-164 (166)
117 smart00338 BRLZ basic region l 53.4 95 0.0021 23.4 8.1 37 219-255 27-63 (65)
118 KOG0163 Myosin class VI heavy 53.2 3.5E+02 0.0075 31.2 14.1 28 209-236 954-981 (1259)
119 PF15397 DUF4618: Domain of un 52.7 2.4E+02 0.0052 27.8 12.6 80 163-242 135-224 (258)
120 KOG4571 Activating transcripti 52.3 70 0.0015 32.1 8.0 30 211-240 255-284 (294)
121 KOG1428 Inhibitor of type V ad 51.7 9.6 0.00021 45.6 2.3 46 302-348 3484-3546(3738)
122 PF11500 Cut12: Spindle pole b 51.3 1.5E+02 0.0032 27.1 9.3 26 207-232 101-126 (152)
123 PRK00888 ftsB cell division pr 51.1 57 0.0012 27.5 6.4 30 204-233 34-63 (105)
124 KOG1734 Predicted RING-contain 50.9 9.5 0.00021 38.0 1.8 53 294-347 214-282 (328)
125 PF13747 DUF4164: Domain of un 50.6 1.4E+02 0.0031 24.5 11.7 38 207-244 35-72 (89)
126 KOG3564 GTPase-activating prot 49.8 1.7E+02 0.0038 31.6 10.8 74 175-257 29-102 (604)
127 PRK12704 phosphodiesterase; Pr 49.5 3.6E+02 0.0078 28.9 15.1 7 316-322 251-257 (520)
128 KOG4807 F-actin binding protei 49.5 3.5E+02 0.0076 28.7 14.2 78 160-237 364-447 (593)
129 PF10186 Atg14: UV radiation r 48.7 2.4E+02 0.0051 26.5 14.5 12 162-173 37-48 (302)
130 smart00502 BBC B-Box C-termina 48.0 1.4E+02 0.0031 23.9 11.1 48 157-208 29-76 (127)
131 PF15070 GOLGA2L5: Putative go 47.5 4.2E+02 0.0092 29.2 14.3 85 159-246 163-255 (617)
132 COG5175 MOT2 Transcriptional r 47.4 6.5 0.00014 40.3 0.1 41 306-347 16-65 (480)
133 PRK09039 hypothetical protein; 47.2 3.2E+02 0.0069 27.6 15.3 49 213-261 139-187 (343)
134 PRK11637 AmiB activator; Provi 46.8 3.4E+02 0.0073 27.8 14.3 27 205-231 90-116 (428)
135 PF12999 PRKCSH-like: Glucosid 46.5 1.1E+02 0.0024 28.5 7.9 27 209-235 144-170 (176)
136 PF14193 DUF4315: Domain of un 46.4 42 0.00091 27.5 4.7 26 207-232 4-29 (83)
137 KOG0241 Kinesin-like protein [ 46.3 84 0.0018 36.7 8.3 46 193-238 378-424 (1714)
138 PHA03415 putative internal vir 46.1 73 0.0016 36.2 7.8 87 154-240 298-397 (1019)
139 KOG0717 Molecular chaperone (D 45.8 4.2E+02 0.009 28.6 13.0 37 163-199 178-214 (508)
140 PF07111 HCR: Alpha helical co 45.2 5E+02 0.011 29.3 14.8 25 208-232 159-183 (739)
141 PRK10884 SH3 domain-containing 45.1 2.7E+02 0.0059 26.3 12.9 47 206-252 120-166 (206)
142 PLN02189 cellulose synthase 44.7 15 0.00032 42.3 2.4 43 303-346 33-87 (1040)
143 TIGR03319 YmdA_YtgF conserved 44.5 4.3E+02 0.0093 28.3 15.1 9 315-323 244-252 (514)
144 PF13863 DUF4200: Domain of un 44.3 1.9E+02 0.0041 24.2 11.7 29 208-236 78-106 (126)
145 PRK11448 hsdR type I restricti 44.0 94 0.002 36.4 8.6 22 215-236 188-209 (1123)
146 PF14931 IFT20: Intraflagellar 43.9 2.2E+02 0.0047 24.8 10.6 22 228-249 97-118 (120)
147 PF14916 CCDC92: Coiled-coil d 43.8 70 0.0015 24.9 5.3 29 196-224 13-41 (60)
148 KOG4398 Predicted coiled-coil 43.4 2.6E+02 0.0055 28.4 10.3 77 168-258 10-88 (359)
149 KOG0994 Extracellular matrix g 43.1 6.1E+02 0.013 30.7 14.4 39 208-246 1609-1647(1758)
150 PF04340 DUF484: Protein of un 43.1 88 0.0019 29.1 7.0 14 218-231 54-67 (225)
151 PRK11637 AmiB activator; Provi 42.5 3.9E+02 0.0085 27.3 12.5 55 206-260 77-131 (428)
152 PF14257 DUF4349: Domain of un 42.0 83 0.0018 29.9 6.7 25 204-228 169-193 (262)
153 KOG2483 Upstream transcription 41.6 1.1E+02 0.0025 29.5 7.5 30 204-233 112-141 (232)
154 PF14775 NYD-SP28_assoc: Sperm 41.6 1.6E+02 0.0035 22.6 7.4 48 173-229 11-58 (60)
155 PF04799 Fzo_mitofusin: fzo-li 41.4 2.5E+02 0.0055 26.1 9.4 77 170-257 79-162 (171)
156 KOG4218 Nuclear hormone recept 41.4 11 0.00025 38.6 0.8 26 304-333 15-40 (475)
157 COG4942 Membrane-bound metallo 40.9 4.3E+02 0.0093 27.9 12.0 44 191-234 64-110 (420)
158 TIGR01069 mutS2 MutS2 family p 40.6 5.5E+02 0.012 28.9 13.7 12 162-173 507-518 (771)
159 PF09403 FadA: Adhesion protei 40.6 2.6E+02 0.0056 24.7 12.2 61 155-235 23-83 (126)
160 KOG0297 TNF receptor-associate 40.4 13 0.00029 38.0 1.1 46 304-350 21-71 (391)
161 PF04111 APG6: Autophagy prote 40.4 3.9E+02 0.0084 26.7 13.1 109 152-261 9-128 (314)
162 PF07716 bZIP_2: Basic region 40.2 1.5E+02 0.0032 21.7 8.3 27 207-233 28-54 (54)
163 PF12761 End3: Actin cytoskele 39.8 58 0.0013 30.8 5.1 25 212-236 97-121 (195)
164 KOG4466 Component of histone d 39.8 3.3E+02 0.0071 27.4 10.4 17 220-236 118-134 (291)
165 PRK14140 heat shock protein Gr 39.4 1.2E+02 0.0027 28.4 7.3 28 211-238 44-71 (191)
166 PF12180 EABR: TSG101 and ALIX 39.3 1.4E+02 0.0029 21.1 5.9 33 225-257 2-34 (35)
167 KOG2817 Predicted E3 ubiquitin 39.2 16 0.00036 37.7 1.5 42 302-345 332-384 (394)
168 COG1196 Smc Chromosome segrega 39.1 5.5E+02 0.012 30.0 13.8 85 172-258 707-791 (1163)
169 cd00729 rubredoxin_SM Rubredox 38.6 8.8 0.00019 26.2 -0.3 16 335-350 18-33 (34)
170 PF09730 BicD: Microtubule-ass 38.6 6.3E+02 0.014 28.5 14.1 67 159-225 48-135 (717)
171 KOG4809 Rab6 GTPase-interactin 38.4 5.8E+02 0.013 28.1 13.2 28 206-233 326-353 (654)
172 PF00170 bZIP_1: bZIP transcri 38.3 1.7E+02 0.0037 21.9 8.6 33 220-252 28-60 (64)
173 PF12325 TMF_TATA_bd: TATA ele 38.2 2.7E+02 0.0059 24.2 13.9 92 153-258 17-108 (120)
174 PF09726 Macoilin: Transmembra 38.2 6.1E+02 0.013 28.4 14.6 31 225-255 545-575 (697)
175 KOG3799 Rab3 effector RIM1 and 37.6 1.3E+02 0.0028 27.4 6.7 36 306-344 67-116 (169)
176 PRK13729 conjugal transfer pil 37.3 1.2E+02 0.0025 32.5 7.4 30 210-239 89-118 (475)
177 smart00503 SynN Syntaxin N-ter 36.7 2.3E+02 0.0049 22.9 11.4 84 173-260 14-103 (117)
178 cd00350 rubredoxin_like Rubred 36.4 10 0.00022 25.4 -0.3 16 335-350 17-32 (33)
179 PF06246 Isy1: Isy1-like splic 36.3 1.4E+02 0.003 29.3 7.3 29 204-232 71-99 (255)
180 PRK15422 septal ring assembly 36.0 2.5E+02 0.0054 23.1 9.4 30 212-241 40-69 (79)
181 PF12718 Tropomyosin_1: Tropom 35.9 3.1E+02 0.0068 24.3 13.6 61 196-257 73-133 (143)
182 KOG1029 Endocytic adaptor prot 35.8 3.4E+02 0.0073 31.2 10.7 8 108-115 312-319 (1118)
183 PF05565 Sipho_Gp157: Siphovir 35.6 2.5E+02 0.0055 25.1 8.5 51 212-262 41-91 (162)
184 PF06818 Fez1: Fez1; InterPro 35.6 2.4E+02 0.0052 26.9 8.5 61 167-228 132-201 (202)
185 PRK10920 putative uroporphyrin 35.3 4.1E+02 0.009 27.6 10.9 39 200-238 95-134 (390)
186 PF14738 PaaSYMP: Solute carri 35.1 3.2E+02 0.007 24.8 9.0 53 166-218 94-146 (154)
187 KOG2660 Locus-specific chromos 35.1 8.3 0.00018 39.0 -1.3 45 304-349 15-64 (331)
188 PF09787 Golgin_A5: Golgin sub 34.8 5.5E+02 0.012 27.2 12.0 60 201-260 359-427 (511)
189 KOG3068 mRNA splicing factor [ 34.8 1.2E+02 0.0026 29.8 6.4 41 190-230 46-95 (268)
190 KOG4643 Uncharacterized coiled 34.7 7.2E+02 0.016 29.5 13.2 76 167-242 370-453 (1195)
191 PRK00409 recombination and DNA 34.4 6.4E+02 0.014 28.4 12.9 13 161-173 511-523 (782)
192 PF10083 DUF2321: Uncharacteri 33.9 16 0.00034 33.5 0.4 25 327-351 30-55 (158)
193 KOG0249 LAR-interacting protei 33.8 3.9E+02 0.0084 30.4 10.7 60 172-231 168-233 (916)
194 TIGR01069 mutS2 MutS2 family p 33.4 6.8E+02 0.015 28.2 12.9 11 176-186 513-523 (771)
195 KOG4445 Uncharacterized conser 33.4 11 0.00023 38.1 -0.8 43 304-347 115-187 (368)
196 PF04977 DivIC: Septum formati 33.4 1.2E+02 0.0026 23.0 5.2 32 206-237 19-50 (80)
197 PF10234 Cluap1: Clusterin-ass 33.0 3.3E+02 0.0071 27.0 9.3 57 166-224 161-217 (267)
198 PRK02224 chromosome segregatio 32.9 7.3E+02 0.016 27.6 15.5 45 206-250 525-569 (880)
199 PRK10963 hypothetical protein; 32.9 1.6E+02 0.0035 27.7 7.0 18 215-232 65-82 (223)
200 KOG1941 Acetylcholine receptor 32.5 2.2E+02 0.0047 30.1 8.2 41 304-345 365-415 (518)
201 KOG2068 MOT2 transcription fac 32.5 28 0.00061 35.3 1.9 46 303-349 248-301 (327)
202 cd00179 SynN Syntaxin N-termin 32.4 3.1E+02 0.0068 23.3 12.3 17 216-232 53-69 (151)
203 KOG2129 Uncharacterized conser 32.0 5.8E+02 0.013 27.3 11.2 63 170-237 256-321 (552)
204 PF08700 Vps51: Vps51/Vps67; 32.0 2.4E+02 0.0053 21.9 10.6 33 167-199 26-58 (87)
205 PF03980 Nnf1: Nnf1 ; InterPr 31.9 2.4E+02 0.0052 23.3 7.2 20 161-180 32-51 (109)
206 PF10217 DUF2039: Uncharacteri 31.8 10 0.00023 31.7 -1.0 38 303-345 54-91 (92)
207 PLN03184 chloroplast Hsp70; Pr 31.6 7.3E+02 0.016 27.3 14.6 49 177-227 558-608 (673)
208 PF07888 CALCOCO1: Calcium bin 31.1 7.3E+02 0.016 27.1 15.9 25 233-257 291-315 (546)
209 PF04642 DUF601: Protein of un 31.1 2.6E+02 0.0057 27.9 8.1 30 217-246 258-287 (311)
210 PF08614 ATG16: Autophagy prot 31.0 3.1E+02 0.0067 25.1 8.4 13 161-173 76-88 (194)
211 COG4026 Uncharacterized protei 30.9 5.3E+02 0.012 25.4 12.9 38 221-258 166-203 (290)
212 PRK14143 heat shock protein Gr 30.6 2.9E+02 0.0063 26.8 8.4 25 165-190 66-90 (238)
213 PF08614 ATG16: Autophagy prot 30.6 4.2E+02 0.0092 24.2 9.6 16 220-235 160-175 (194)
214 KOG4809 Rab6 GTPase-interactin 30.5 7.8E+02 0.017 27.2 13.7 92 166-257 331-453 (654)
215 PF08654 DASH_Dad2: DASH compl 30.5 3E+02 0.0065 23.4 7.6 17 203-219 3-19 (103)
216 PHA02562 46 endonuclease subun 30.4 6.4E+02 0.014 26.2 14.3 45 195-239 204-248 (562)
217 PF05600 DUF773: Protein of un 30.3 7.1E+02 0.015 26.7 15.0 62 201-262 436-497 (507)
218 PF04859 DUF641: Plant protein 30.2 1.9E+02 0.004 25.8 6.5 68 154-226 47-123 (131)
219 KOG1151 Tousled-like protein k 30.0 2.9E+02 0.0063 30.1 8.8 97 158-257 239-351 (775)
220 KOG3161 Predicted E3 ubiquitin 30.0 20 0.00042 39.6 0.4 37 305-343 12-54 (861)
221 COG2960 Uncharacterized protei 29.9 3.6E+02 0.0079 23.2 8.1 11 217-227 72-82 (103)
222 PRK14127 cell division protein 29.9 2.2E+02 0.0048 24.5 6.7 10 166-175 26-35 (109)
223 COG4306 Uncharacterized protei 29.7 22 0.00048 31.8 0.6 25 327-351 30-55 (160)
224 PF08549 SWI-SNF_Ssr4: Fungal 29.5 1.1E+02 0.0023 34.1 5.7 60 166-228 363-429 (669)
225 PF14569 zf-UDP: Zinc-binding 29.4 28 0.00061 28.5 1.1 44 303-346 8-62 (80)
226 KOG0804 Cytoplasmic Zn-finger 29.4 7.4E+02 0.016 26.6 14.9 9 160-168 348-356 (493)
227 COG5481 Uncharacterized conser 29.0 2.6E+02 0.0057 22.0 6.3 48 179-231 9-58 (67)
228 PF09728 Taxilin: Myosin-like 28.9 6E+02 0.013 25.4 14.0 99 157-260 79-181 (309)
229 PRK14139 heat shock protein Gr 28.6 1.1E+02 0.0024 28.6 5.0 26 164-190 30-55 (185)
230 PF11221 Med21: Subunit 21 of 28.5 3E+02 0.0065 24.2 7.6 18 156-173 73-90 (144)
231 PF05983 Med7: MED7 protein; 28.3 3.8E+02 0.0082 24.3 8.3 57 167-227 105-161 (162)
232 TIGR03185 DNA_S_dndD DNA sulfu 28.2 8E+02 0.017 26.6 12.9 22 236-257 259-280 (650)
233 COG3937 Uncharacterized conser 28.2 1.9E+02 0.004 25.1 5.9 18 197-214 61-78 (108)
234 KOG0977 Nuclear envelope prote 28.2 8.2E+02 0.018 26.8 14.2 46 189-234 144-192 (546)
235 cd08313 Death_TNFR1 Death doma 28.2 74 0.0016 25.8 3.3 54 201-257 16-69 (80)
236 PF14282 FlxA: FlxA-like prote 28.0 3.3E+02 0.0071 22.9 7.4 52 210-261 18-73 (106)
237 COG2433 Uncharacterized conser 27.4 2.5E+02 0.0054 31.1 8.0 53 206-258 438-493 (652)
238 COG5019 CDC3 Septin family pro 27.2 4.3E+02 0.0093 27.5 9.3 54 177-230 315-368 (373)
239 PRK05892 nucleoside diphosphat 27.0 2.4E+02 0.0053 25.4 6.8 6 166-171 18-23 (158)
240 PHA03248 DNA packaging tegumen 26.8 2.2E+02 0.0048 31.2 7.5 49 179-227 53-108 (583)
241 PF14662 CCDC155: Coiled-coil 26.8 5.6E+02 0.012 24.4 12.8 77 176-258 38-114 (193)
242 PRK04863 mukB cell division pr 26.6 1.3E+03 0.027 28.4 16.3 46 211-256 355-400 (1486)
243 COG1579 Zn-ribbon protein, pos 26.5 6.1E+02 0.013 24.7 12.9 36 203-238 88-123 (239)
244 PF12861 zf-Apc11: Anaphase-pr 26.3 57 0.0012 27.0 2.4 29 317-346 47-82 (85)
245 PF10174 Cast: RIM-binding pro 26.2 1E+03 0.022 27.2 15.1 84 173-258 321-404 (775)
246 PRK03564 formate dehydrogenase 26.1 50 0.0011 33.2 2.4 40 304-344 187-235 (309)
247 KOG2391 Vacuolar sorting prote 26.0 6.8E+02 0.015 25.9 10.3 24 210-233 241-264 (365)
248 PRK14714 DNA polymerase II lar 25.8 45 0.00099 39.4 2.3 47 304-351 667-725 (1337)
249 TIGR02231 conserved hypothetic 25.7 8E+02 0.017 25.8 11.7 42 216-257 129-170 (525)
250 PF11793 FANCL_C: FANCL C-term 25.6 25 0.00054 27.4 0.2 12 337-348 57-68 (70)
251 cd00730 rubredoxin Rubredoxin; 25.6 27 0.00059 26.0 0.4 13 337-349 36-48 (50)
252 PF04156 IncA: IncA protein; 25.5 4.9E+02 0.011 23.2 14.7 18 213-230 132-149 (191)
253 PF05266 DUF724: Protein of un 25.5 5.6E+02 0.012 23.9 11.2 38 71-112 17-54 (190)
254 PF03528 Rabaptin: Rabaptin; 25.5 2.7E+02 0.0059 24.0 6.4 31 204-234 70-102 (106)
255 PRK14157 heat shock protein Gr 25.5 1.6E+02 0.0034 28.6 5.6 35 208-242 81-115 (227)
256 PF11505 DUF3216: Protein of u 25.4 2.1E+02 0.0046 24.2 5.6 57 166-228 21-85 (97)
257 KOG1940 Zn-finger protein [Gen 25.3 14 0.0003 36.6 -1.6 38 305-343 159-204 (276)
258 COG3159 Uncharacterized protei 25.2 2.7E+02 0.0058 26.9 7.0 21 212-232 46-66 (218)
259 KOG3119 Basic region leucine z 25.2 3.7E+02 0.008 26.3 8.2 37 221-257 218-254 (269)
260 PF04977 DivIC: Septum formati 25.2 2.8E+02 0.0061 20.9 6.1 27 204-230 24-50 (80)
261 PF06188 HrpE: HrpE/YscL/FliH 24.8 5.6E+02 0.012 23.7 12.3 27 192-218 33-59 (191)
262 PF08112 ATP-synt_E_2: ATP syn 24.8 3.2E+02 0.007 21.0 7.1 46 166-219 7-52 (56)
263 PRK14127 cell division protein 24.8 1.8E+02 0.0038 25.1 5.2 30 212-241 38-67 (109)
264 KOG2991 Splicing regulator [RN 24.8 7.3E+02 0.016 25.0 11.5 27 212-238 178-204 (330)
265 KOG0006 E3 ubiquitin-protein l 24.8 43 0.00093 34.3 1.7 29 304-333 221-251 (446)
266 KOG2008 BTK-associated SH3-dom 24.6 8E+02 0.017 25.4 13.8 19 202-220 160-178 (426)
267 PF08202 MIS13: Mis12-Mtw1 pro 24.5 93 0.002 30.8 4.0 24 218-241 164-187 (301)
268 PHA02562 46 endonuclease subun 24.4 8.1E+02 0.018 25.4 13.0 32 202-233 356-387 (562)
269 COG4357 Zinc finger domain con 24.3 41 0.00089 28.7 1.2 44 306-349 37-94 (105)
270 PRK14155 heat shock protein Gr 24.2 2.3E+02 0.005 26.9 6.4 9 212-220 42-50 (208)
271 PF08317 Spc7: Spc7 kinetochor 24.0 7.2E+02 0.016 24.7 14.9 32 154-185 113-144 (325)
272 TIGR01461 greB transcription e 24.0 2.1E+02 0.0045 25.7 5.8 16 212-227 46-61 (156)
273 PF06005 DUF904: Protein of un 23.6 3.8E+02 0.0082 21.3 9.3 51 207-257 21-71 (72)
274 KOG0824 Predicted E3 ubiquitin 23.5 44 0.00095 33.8 1.5 16 335-350 42-57 (324)
275 KOG0709 CREB/ATF family transc 23.3 1.8E+02 0.004 31.0 6.0 35 223-257 277-311 (472)
276 PF10186 Atg14: UV radiation r 23.3 6.2E+02 0.013 23.7 16.0 26 232-257 126-151 (302)
277 PLN02436 cellulose synthase A 23.1 56 0.0012 38.0 2.4 44 303-346 35-89 (1094)
278 PF14712 Snapin_Pallidin: Snap 22.9 3.9E+02 0.0084 21.2 10.5 56 173-230 34-90 (92)
279 PRK14148 heat shock protein Gr 22.9 2.3E+02 0.005 26.7 6.1 23 166-189 40-62 (195)
280 PHA02825 LAP/PHD finger-like p 22.9 69 0.0015 29.5 2.5 43 303-346 7-59 (162)
281 COG3851 UhpB Signal transducti 22.8 3.9E+02 0.0085 28.3 8.1 23 204-226 272-294 (497)
282 PF10198 Ada3: Histone acetylt 22.8 5.3E+02 0.011 22.7 9.0 57 201-261 37-93 (131)
283 PF06273 eIF-4B: Plant specifi 22.7 77 0.0017 33.9 3.1 12 204-215 403-414 (492)
284 PRK06975 bifunctional uroporph 22.7 8.4E+02 0.018 26.8 11.2 77 160-238 343-419 (656)
285 PF06210 DUF1003: Protein of u 22.7 3.4E+02 0.0074 23.2 6.6 27 151-177 53-79 (108)
286 KOG3113 Uncharacterized conser 22.6 67 0.0015 31.9 2.5 48 304-352 111-164 (293)
287 PRK14158 heat shock protein Gr 22.6 3.4E+02 0.0074 25.5 7.1 16 173-188 46-61 (194)
288 PF07334 IFP_35_N: Interferon- 22.5 1.4E+02 0.0029 24.4 3.8 24 213-236 2-25 (76)
289 PF06657 Cep57_MT_bd: Centroso 22.2 4.2E+02 0.0091 21.3 7.0 23 153-175 11-33 (79)
290 TIGR02209 ftsL_broad cell divi 22.0 2.6E+02 0.0056 21.7 5.4 36 205-240 25-60 (85)
291 PF12329 TMF_DNA_bd: TATA elem 21.9 4.1E+02 0.0088 21.0 9.1 38 201-241 33-70 (74)
292 PRK13182 racA polar chromosome 21.8 6.4E+02 0.014 23.2 8.9 25 205-229 119-143 (175)
293 PF15070 GOLGA2L5: Putative go 21.7 1.1E+03 0.024 26.0 15.7 24 221-244 198-221 (617)
294 PLN03188 kinesin-12 family pro 21.7 1.3E+03 0.027 28.1 12.6 23 203-225 1203-1225(1320)
295 PF06785 UPF0242: Uncharacteri 21.6 9.3E+02 0.02 25.1 11.0 72 188-260 98-176 (401)
296 COG4717 Uncharacterized conser 21.6 1.3E+03 0.029 26.9 13.0 52 204-261 209-260 (984)
297 PF13600 DUF4140: N-terminal d 21.6 2E+02 0.0043 23.4 4.8 30 208-237 74-103 (104)
298 KOG1029 Endocytic adaptor prot 21.5 1.3E+03 0.029 26.8 15.3 9 226-234 407-415 (1118)
299 PF08172 CASP_C: CASP C termin 21.5 1.8E+02 0.004 28.2 5.3 33 214-246 89-121 (248)
300 PRK00409 recombination and DNA 21.5 1.2E+03 0.026 26.3 13.4 9 177-185 519-527 (782)
301 KOG4005 Transcription factor X 21.4 7.3E+02 0.016 24.7 9.2 27 214-240 93-119 (292)
302 PF10764 Gin: Inhibitor of sig 21.3 53 0.0012 24.0 1.2 28 306-335 1-28 (46)
303 PF11740 KfrA_N: Plasmid repli 21.2 4.7E+02 0.01 21.5 9.4 17 208-224 99-115 (120)
304 KOG1962 B-cell receptor-associ 21.0 4.6E+02 0.0099 25.3 7.7 30 204-233 165-194 (216)
305 PHA02107 hypothetical protein 20.9 2.3E+02 0.005 26.6 5.4 32 200-231 180-211 (216)
306 KOG0980 Actin-binding protein 20.7 7.3E+02 0.016 28.9 10.1 43 216-258 356-398 (980)
307 TIGR02169 SMC_prok_A chromosom 20.7 1.2E+03 0.027 26.2 15.8 50 206-255 870-919 (1164)
308 TIGR01010 BexC_CtrB_KpsE polys 20.6 8.3E+02 0.018 24.2 11.8 16 171-186 174-189 (362)
309 PRK14161 heat shock protein Gr 20.6 5.5E+02 0.012 23.8 8.0 11 165-175 10-20 (178)
310 PF05008 V-SNARE: Vesicle tran 20.6 4E+02 0.0086 20.4 10.1 30 208-237 22-51 (79)
311 KOG4217 Nuclear receptors of t 20.5 37 0.0008 36.3 0.3 27 302-334 267-295 (605)
312 KOG3976 Mitochondrial F1F0-ATP 20.4 8.3E+02 0.018 24.1 12.9 91 161-251 112-209 (247)
313 PRK09841 cryptic autophosphory 20.3 1.2E+03 0.026 25.8 12.5 17 170-186 270-286 (726)
314 KOG2220 Predicted signal trans 20.2 1.1E+03 0.025 26.4 11.6 41 148-188 344-384 (714)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=300.25 Aligned_cols=192 Identities=46% Similarity=0.774 Sum_probs=168.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018564 156 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ 235 (354)
Q Consensus 156 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~Q 235 (354)
++++++++|..|||+|+++++++||..+.+.++++++.++.++|..+.++||+|++||++++++||+|+|+++++.+|++
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC-CCCCCcccccccccCCccccccCCCcccccccccccc
Q 018564 236 VWQAKARAQEATAASLQAQLQQAIMSGAGCGAQDSRRGDDGL-MCTGEVAEDAESAYVDPDRVVSVPVSGPACKGCRKRV 314 (354)
Q Consensus 236 aWq~~A~~nEA~a~~Lra~LqQ~l~~~~~~~~~~~~~g~~g~-~c~g~~~eDaeS~~~d~~r~~~~~~~~~~C~IC~~~~ 314 (354)
.|+++|++||+++++|+.+|+|++.+.. . . ...++++. +++..+.||++|+|++++........ .|+.|.+++
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~-~--~-~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~~~~~~--~Cr~C~~~~ 168 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCP-A--S-APAEERGQKSCGDREADDGKSSYVDPSVDNFKRMR--SCRKCGERE 168 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcc-c--c-cCchhhhccccCccccccccccccchhhhhhhccc--cceecCcCC
Confidence 9999999999999999999999999851 1 1 11222221 22233578999999888664422121 299999999
Q ss_pred cceEEeCCCCcccchhhHHhCCCCCCCcccccceEEEee
Q 018564 315 ASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFL 353 (354)
Q Consensus 315 ~~vlLLPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l 353 (354)
++|+|+||+|+|+|..|...+..||+|+.+++++++||+
T Consensus 169 ~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 169 ATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred ceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 999999999999999999889999999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.7e-12 Score=125.80 Aligned_cols=52 Identities=35% Similarity=0.945 Sum_probs=47.6
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHhCC----CCCCCcccccceEEEee
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFL 353 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l~----~CPvCR~~i~~sV~V~l 353 (354)
.++..|+||++..+++++|||||+|+|..|+..++ .||+||.+|...++|+.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 34679999999999999999999999999999874 69999999999999875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.01 E-value=1.2e-10 Score=84.59 Aligned_cols=45 Identities=40% Similarity=0.936 Sum_probs=39.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC----CCCCCCcccccce
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSS 348 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l----~~CPvCR~~i~~s 348 (354)
+..|.||+++..+++++||+|.++|..|...+ ..||+||.+|+.+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35899999999999999999999999999887 7999999999763
No 4
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.8e-11 Score=88.61 Aligned_cols=51 Identities=25% Similarity=0.715 Sum_probs=45.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC-----CCCCCCcccccceEEEeeC
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDSSVEVFLS 354 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l-----~~CPvCR~~i~~sV~V~lS 354 (354)
+..|.||++++.+.+|.-|||+|+|.+|...+ ..||+||.+|..+|+.|-|
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 35899999999999999999999999998775 3799999999999988754
No 5
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.1e-10 Score=110.12 Aligned_cols=50 Identities=28% Similarity=0.695 Sum_probs=48.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhCCCCCCCcccccceEEEee
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFL 353 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l 353 (354)
..+|+||++.+++.+||+|||.+.|..|...|..|||||..|...++||-
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhc
Confidence 57999999999999999999999999999999999999999999999985
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.3e-09 Score=108.04 Aligned_cols=52 Identities=29% Similarity=0.691 Sum_probs=49.1
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHhCCCCCCCcccccceEEEeeC
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 354 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~lS 354 (354)
....|+||.+.+.+++|+||||+|+|..|...+..||+||..|...+++|.|
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 4568999999999999999999999999999999999999999999999875
No 7
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.2e-05 Score=83.13 Aligned_cols=128 Identities=20% Similarity=0.380 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 018564 201 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSGAGCGAQDSRRGDDGLMCT 280 (354)
Q Consensus 201 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~~~~~~~~~~~~g~~g~~c~ 280 (354)
.+.+.++..-.++++...+.-.+++++.-+..|-..-....+--|.....|+-.|+.+-. ... ++.+.
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~---------~~~---~~s~d 630 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK---------EES---GASAD 630 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------ccc---ccccc
Confidence 455666666667777777777777777777777777777766667777777777766311 111 11000
Q ss_pred CCcccccccccCCccccccCCCcccccccccccccceEEeCCCCcccchhhHHh-----CCCCCCCcccccc--eEEEe
Q 018564 281 GEVAEDAESAYVDPDRVVSVPVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS--SVEVF 352 (354)
Q Consensus 281 g~~~eDaeS~~~d~~r~~~~~~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~--sV~V~ 352 (354)
...+++.. +. .....|.+|.+++.++++.-|+|+ +|..|... .++||.|.+++-. +..||
T Consensus 631 ~~L~EElk-------~y----K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 631 EVLAEELK-------EY----KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHHHHHHH-------HH----HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 00111111 11 224589999999999999999998 99999655 5899999998754 44444
No 8
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.04 E-value=1.4e-06 Score=88.09 Aligned_cols=54 Identities=30% Similarity=0.599 Sum_probs=46.3
Q ss_pred cCCCcccccccccccccceEEeCCCCcccchhhHHh------CCCCCCCcccccceEEEee
Q 018564 299 SVPVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV------VQACPLCFNVRDSSVEVFL 353 (354)
Q Consensus 299 ~~~~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~------l~~CPvCR~~i~~sV~V~l 353 (354)
+|+.....|+||-+++.+|-+-||||+ +|..|-.. -..||+||..|++.-.|.+
T Consensus 364 eMgsTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 364 EMGSTFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred HccchHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 356777899999999999999999999 99999654 3599999999999766643
No 9
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.46 E-value=7e-05 Score=53.21 Aligned_cols=36 Identities=28% Similarity=0.850 Sum_probs=30.6
Q ss_pred cccccccc---cceEEeCCCCcccchhhHHhCC----CCCCCcc
Q 018564 307 CKGCRKRV---ASVVLLPCRHLCVCTECDRVVQ----ACPLCFN 343 (354)
Q Consensus 307 C~IC~~~~---~~vlLLPCrHlclC~~C~~~l~----~CPvCR~ 343 (354)
|.+|++.. ...+|++|+|. +|..|...+. .||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 77887765 45889999999 9999998876 9999984
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00011 Score=69.89 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=40.4
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHh-------CCCCCCCcccccc--eEEEe
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-------VQACPLCFNVRDS--SVEVF 352 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-------l~~CPvCR~~i~~--sV~V~ 352 (354)
.+.-.|-||++...+-|+-+|||| +|..|--. .+.||||+..|.. +|.||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 345689999999999999999999 99999644 3588999997654 55554
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.38 E-value=0.00015 Score=67.44 Aligned_cols=48 Identities=27% Similarity=0.593 Sum_probs=39.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh--------------------CCCCCCCcccccc--eEEEe
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV--------------------VQACPLCFNVRDS--SVEVF 352 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~--------------------l~~CPvCR~~i~~--sV~V~ 352 (354)
...|.||++...+.++.||+|+ +|..|... ...||+||.++.. .+.||
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 4689999999999999999998 89999742 1379999999865 44444
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00011 Score=71.67 Aligned_cols=51 Identities=25% Similarity=0.547 Sum_probs=41.2
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccceEEEe
Q 018564 301 PVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEVF 352 (354)
Q Consensus 301 ~~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V~ 352 (354)
.+..+.|.+|+++..+--..||||+ +|..|-.. -..||+||....-+--|.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceee
Confidence 3556899999999999889999999 99999543 458999999876554443
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.33 E-value=0.00012 Score=50.64 Aligned_cols=34 Identities=35% Similarity=0.918 Sum_probs=27.7
Q ss_pred cccccccccce-EEeCCCCcccchhhHHh----CCCCCCC
Q 018564 307 CKGCRKRVASV-VLLPCRHLCVCTECDRV----VQACPLC 341 (354)
Q Consensus 307 C~IC~~~~~~v-lLLPCrHlclC~~C~~~----l~~CPvC 341 (354)
|.||++...+. +++||||+ +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999998887 78999999 89999765 3699988
No 14
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.31 E-value=0.00021 Score=68.42 Aligned_cols=47 Identities=28% Similarity=0.653 Sum_probs=36.6
Q ss_pred ccccccccccccc--------eEEeCCCCcccchhhHHh----CCCCCCCcccccceEEE
Q 018564 304 GPACKGCRKRVAS--------VVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 351 (354)
Q Consensus 304 ~~~C~IC~~~~~~--------vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V 351 (354)
...|.||++.-.. .++.||+|. +|..|-.. ..+||+||.++.+.+..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 3589999986322 466789997 99999744 35999999999887765
No 15
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.18 E-value=0.00028 Score=45.93 Aligned_cols=34 Identities=38% Similarity=1.021 Sum_probs=29.6
Q ss_pred cccccccccceEEeCCCCcccchhhHHh-----CCCCCCC
Q 018564 307 CKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLC 341 (354)
Q Consensus 307 C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvC 341 (354)
|.||++.....+++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 89999864 3579987
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.98 E-value=0.00064 Score=45.82 Aligned_cols=39 Identities=38% Similarity=0.881 Sum_probs=29.9
Q ss_pred ccccccccc-cceEEeCCCCcccchhhHHh-----CCCCCCCcccc
Q 018564 306 ACKGCRKRV-ASVVLLPCRHLCVCTECDRV-----VQACPLCFNVR 345 (354)
Q Consensus 306 ~C~IC~~~~-~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i 345 (354)
.|.||++.. ..+.+.||+|. +|..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 488999887 44555569999 89999763 35799999753
No 17
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.93 E-value=0.00043 Score=52.48 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=36.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh--CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV--VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~--l~~CPvCR~~i~~ 347 (354)
.-.|..|......-+++||+|+ +|..|... ...||+|..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 3579999999888899999999 89999654 5799999998864
No 18
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.90 E-value=0.00052 Score=48.31 Aligned_cols=36 Identities=33% Similarity=0.816 Sum_probs=28.8
Q ss_pred ccccccccc---cceEEeCCCCcccchhhHHh----CCCCCCCc
Q 018564 306 ACKGCRKRV---ASVVLLPCRHLCVCTECDRV----VQACPLCF 342 (354)
Q Consensus 306 ~C~IC~~~~---~~vlLLPCrHlclC~~C~~~----l~~CPvCR 342 (354)
.|.||++.- ..++.+||+|. +|..|... -.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 588998864 56888999998 99999765 36999997
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.00065 Score=62.56 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=37.9
Q ss_pred ccccccccccccceE-E-eCCCCcccchhhHHh----CCCCCCCccccc--ceEEEee
Q 018564 304 GPACKGCRKRVASVV-L-LPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 353 (354)
Q Consensus 304 ~~~C~IC~~~~~~vl-L-LPCrHlclC~~C~~~----l~~CPvCR~~i~--~sV~V~l 353 (354)
.-.|.||++.....+ + --|||+ +|+.|... ..+||+|+..|+ .++.|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 358999999766644 3 589999 99999876 369999997655 4667765
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.48 E-value=0.0017 Score=44.72 Aligned_cols=34 Identities=44% Similarity=1.023 Sum_probs=28.8
Q ss_pred cccccccccceE-EeCCCCcccchhhHHh------CCCCCCC
Q 018564 307 CKGCRKRVASVV-LLPCRHLCVCTECDRV------VQACPLC 341 (354)
Q Consensus 307 C~IC~~~~~~vl-LLPCrHlclC~~C~~~------l~~CPvC 341 (354)
|.||++.....+ ++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999888877 9999999 99999765 2479987
No 21
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0019 Score=67.42 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=41.0
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHh---------CCCCCCCcccccc--eEEEe
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV---------VQACPLCFNVRDS--SVEVF 352 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~---------l~~CPvCR~~i~~--sV~V~ 352 (354)
.....|.||++.+...++.-|||. +|..|--. ...||+|+..|.. ..-|+
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CcCCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 347899999999999999999999 89999433 3599999999887 54444
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=96.28 E-value=0.0014 Score=62.37 Aligned_cols=46 Identities=24% Similarity=0.561 Sum_probs=34.7
Q ss_pred cccccccccccc---------cceEEeCCCCcccchhhHHh----------CCCCCCCcccccceE
Q 018564 303 SGPACKGCRKRV---------ASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDSSV 349 (354)
Q Consensus 303 ~~~~C~IC~~~~---------~~vlLLPCrHlclC~~C~~~----------l~~CPvCR~~i~~sV 349 (354)
.+..|.||++.. .--+|.||+|. +|..|-.. .+.||+||..+...+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 356899999862 12578899999 99999653 135999999887554
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.27 E-value=0.0022 Score=65.53 Aligned_cols=44 Identities=30% Similarity=0.653 Sum_probs=37.0
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
....|.||.+.-.+-+++||+|. +|..|... ...||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 45799999998888888999999 89999764 2479999998764
No 24
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0022 Score=57.47 Aligned_cols=39 Identities=33% Similarity=0.739 Sum_probs=33.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC----CCCCCCcc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFN 343 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l----~~CPvCR~ 343 (354)
...|.||++.-..-.++||+|. +|..|...+ -.||.||.
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 5689999998777799999999 899998774 48999993
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0041 Score=60.39 Aligned_cols=43 Identities=28% Similarity=0.609 Sum_probs=36.3
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHh------CCCCCCCcccc
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV------VQACPLCFNVR 345 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~------l~~CPvCR~~i 345 (354)
..+..|.+|++..-+-...||||+ +|..|--. ...||+||+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhc
Confidence 446789999999999999999999 89999543 35799999854
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=95.75 E-value=0.0046 Score=43.91 Aligned_cols=34 Identities=35% Similarity=0.836 Sum_probs=25.4
Q ss_pred cccccccccceEEeCCCCcccchhhHHhC--------CCCCCC
Q 018564 307 CKGCRKRVASVVLLPCRHLCVCTECDRVV--------QACPLC 341 (354)
Q Consensus 307 C~IC~~~~~~vlLLPCrHlclC~~C~~~l--------~~CPvC 341 (354)
|.||++--.+-+.++|||. +|..|.... -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7899999889889999999 899997663 268887
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.72 E-value=0.0035 Score=45.07 Aligned_cols=27 Identities=30% Similarity=0.981 Sum_probs=16.5
Q ss_pred cccccccccc----eEEeCCCCcccchhhHHhC
Q 018564 307 CKGCRKRVAS----VVLLPCRHLCVCTECDRVV 335 (354)
Q Consensus 307 C~IC~~~~~~----vlLLPCrHlclC~~C~~~l 335 (354)
|.||++ ..+ -++|||||. +|..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 788888 555 577899999 899997764
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.66 E-value=0.0087 Score=44.35 Aligned_cols=42 Identities=12% Similarity=0.013 Sum_probs=34.7
Q ss_pred cccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 305 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 305 ~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
..|.||++--.+-++.||||. +|..|... -.+||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 469999998888888999998 89999765 2589999998743
No 29
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0056 Score=61.83 Aligned_cols=45 Identities=22% Similarity=0.482 Sum_probs=37.3
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
..+..|+||+..+.+.+|-||+|. .|..|-.. .+.|-+|++.+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 446799999999999999999999 79999765 3678888776543
No 30
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.05 E-value=0.012 Score=59.49 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=39.4
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHhC------CCCCCCcccccceE
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV------QACPLCFNVRDSSV 349 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l------~~CPvCR~~i~~sV 349 (354)
+.++.|.||-..-.-+.++||+|. +|-.|+-.+ +.||+||+.-..++
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 346799999999888999999999 899998774 59999998765543
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.029 Score=55.81 Aligned_cols=42 Identities=26% Similarity=0.617 Sum_probs=33.0
Q ss_pred cccccccccc---ccceEEeCCCCcccchhhHHh-----CCCCCCCccccc
Q 018564 304 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRD 346 (354)
Q Consensus 304 ~~~C~IC~~~---~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~ 346 (354)
+-.|.||+++ .-.++.+||.|. +=..|-.+ -.+||+||+++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 4689999985 223788899998 77888765 259999999875
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.19 E-value=0.024 Score=56.13 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=35.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVR 345 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i 345 (354)
...|.||.+.-+--++-||+|. +|.-|... -..||+||.+.
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred HHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccH
Confidence 4589999999999999999999 89999876 25999999864
No 33
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.041 Score=53.97 Aligned_cols=45 Identities=27% Similarity=0.544 Sum_probs=36.4
Q ss_pred CCcccccccccccccc-eEEeCCCCcccchhhHHhC------CCCCCCccccc
Q 018564 301 PVSGPACKGCRKRVAS-VVLLPCRHLCVCTECDRVV------QACPLCFNVRD 346 (354)
Q Consensus 301 ~~~~~~C~IC~~~~~~-vlLLPCrHlclC~~C~~~l------~~CPvCR~~i~ 346 (354)
+.++..|.+|.+.+.. .+..||+|. .|..|...- -+||.|..+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 3567899999998877 666789997 899997652 28999998765
No 34
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.029 Score=57.16 Aligned_cols=44 Identities=27% Similarity=0.583 Sum_probs=32.4
Q ss_pred CCccccccccccc-------------ccceEEeCCCCcccchhhHHh----CCCCCCCcccc
Q 018564 301 PVSGPACKGCRKR-------------VASVVLLPCRHLCVCTECDRV----VQACPLCFNVR 345 (354)
Q Consensus 301 ~~~~~~C~IC~~~-------------~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i 345 (354)
+.++..|.||++. ...-.=|||||. +=..|-.. -++||+||.|+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 5677899999997 111244799996 66777543 47999999984
No 35
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.026 Score=59.51 Aligned_cols=41 Identities=34% Similarity=0.670 Sum_probs=35.0
Q ss_pred ccccccccccccc-----eEEeCCCCcccchhhHHh----CCCCCCCcccc
Q 018564 304 GPACKGCRKRVAS-----VVLLPCRHLCVCTECDRV----VQACPLCFNVR 345 (354)
Q Consensus 304 ~~~C~IC~~~~~~-----vlLLPCrHlclC~~C~~~----l~~CPvCR~~i 345 (354)
...|.||.+.-.. ...+||+|. +|..|-.. ..+||+||..+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 5689999998877 799999998 89999655 57999999943
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=93.01 E-value=0.033 Score=56.14 Aligned_cols=44 Identities=27% Similarity=0.581 Sum_probs=37.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC----CCCCCCcccccce
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSS 348 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l----~~CPvCR~~i~~s 348 (354)
...|-||++--.--++.||+|. +|.-|.... ..||.|+.+++.+
T Consensus 23 lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 3589999998888899999999 899998773 4999999887653
No 37
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=92.02 E-value=0.13 Score=40.51 Aligned_cols=27 Identities=33% Similarity=0.774 Sum_probs=20.2
Q ss_pred cceEEeCCCCcccchhhHHh----CCCCCCCc
Q 018564 315 ASVVLLPCRHLCVCTECDRV----VQACPLCF 342 (354)
Q Consensus 315 ~~vlLLPCrHlclC~~C~~~----l~~CPvCR 342 (354)
..+++.+|+|. +-..|... -.+||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 44677899998 89999764 35999997
No 38
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=0.11 Score=52.34 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=36.8
Q ss_pred cccccccccccccceE-----E---eCCCCcccchhhHHh-----------CCCCCCCcccccceE
Q 018564 303 SGPACKGCRKRVASVV-----L---LPCRHLCVCTECDRV-----------VQACPLCFNVRDSSV 349 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vl-----L---LPCrHlclC~~C~~~-----------l~~CPvCR~~i~~sV 349 (354)
....|-||++.-.... | .+|.|. +|..|... .+.||+||.+...++
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 4679999999877666 4 779998 99999644 369999999877655
No 39
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.76 E-value=0.22 Score=47.85 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=36.3
Q ss_pred Cccccccccccc----ccceEEeCCCCcccchhhHHhCC---CCCCCcccccce
Q 018564 302 VSGPACKGCRKR----VASVVLLPCRHLCVCTECDRVVQ---ACPLCFNVRDSS 348 (354)
Q Consensus 302 ~~~~~C~IC~~~----~~~vlLLPCrHlclC~~C~~~l~---~CPvCR~~i~~s 348 (354)
.....|+|.+.. ..-|+|.||||+ ++..+...+. .||+|..++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 345689888753 456888899998 8999988876 899999997754
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=90.47 E-value=0.15 Score=40.00 Aligned_cols=41 Identities=29% Similarity=0.677 Sum_probs=21.8
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhHHhC--CCCCCCcccc
Q 018564 304 GPACKGCRKRVAS-VVLLPCRHLCVCTECDRVV--QACPLCFNVR 345 (354)
Q Consensus 304 ~~~C~IC~~~~~~-vlLLPCrHlclC~~C~~~l--~~CPvCR~~i 345 (354)
...|.+|.+--.. |.+.-|-|. +|..|.... ..||+|+.|-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 4579999887555 457899999 999998774 6899999875
No 41
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=89.67 E-value=0.27 Score=49.31 Aligned_cols=49 Identities=6% Similarity=-0.096 Sum_probs=42.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC--CCCCCCcccccceEEEe
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV--QACPLCFNVRDSSVEVF 352 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l--~~CPvCR~~i~~sV~V~ 352 (354)
...|.+|..+-.+.++.||+|.-.|.+|+..- .+||+|.......|.|.
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i~ 393 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPIN 393 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeecC
Confidence 46899999999999999999999999998752 49999998877777653
No 42
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=0.24 Score=50.07 Aligned_cols=43 Identities=23% Similarity=0.568 Sum_probs=30.0
Q ss_pred ccccccccc---ccceEEeCCCCcccchhhHHh-C----CCCCCCcccccce
Q 018564 305 PACKGCRKR---VASVVLLPCRHLCVCTECDRV-V----QACPLCFNVRDSS 348 (354)
Q Consensus 305 ~~C~IC~~~---~~~vlLLPCrHlclC~~C~~~-l----~~CPvCR~~i~~s 348 (354)
..|.||++. .-.+.+|||.|- .=..|-.. + ..||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 489999985 233667999998 44456433 1 3699999877653
No 43
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.69 E-value=0.28 Score=50.60 Aligned_cols=42 Identities=24% Similarity=0.440 Sum_probs=32.2
Q ss_pred ccccccccccc---cceEEeCCCCcccchhhHHh-----C-------CCCCCCccccc
Q 018564 304 GPACKGCRKRV---ASVVLLPCRHLCVCTECDRV-----V-------QACPLCFNVRD 346 (354)
Q Consensus 304 ~~~C~IC~~~~---~~vlLLPCrHlclC~~C~~~-----l-------~~CPvCR~~i~ 346 (354)
.-.|.||++.. .+++|+||+|+ +|+.|... + -.||-|..+-.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV 240 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence 45799999965 45999999998 89999765 1 28887765543
No 44
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=87.47 E-value=16 Score=34.78 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhHHHHH
Q 018564 164 QRDELDQFLQAQGEQLRR---ALAEKRQRHYRALLGAAEESIARLLR---------------EKEAEVEKATRRNAELEA 225 (354)
Q Consensus 164 Q~~EID~~i~~q~ErLR~---~L~E~rqrh~r~ll~avE~~~~~rLR---------------eKEeEIera~rrn~ELEE 225 (354)
-+..=.++|.+++|-.+. +|+|---||... .|++..++.|.+ .-++||-.+++|+.|||-
T Consensus 66 LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~--dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~ 143 (205)
T PF12240_consen 66 LREKEERILALEADMTKWEQKYLEESAMRQFAM--DAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMEN 143 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHH
Confidence 334445899999998874 577776666543 344555555665 337899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 226 RAAQLSVEAQVWQAKARAQEATAASLQAQL 255 (354)
Q Consensus 226 Rlrql~~E~QaWq~~A~~nEA~a~~Lra~L 255 (354)
||+.|.++ -.+.+||+..|+...
T Consensus 144 RIK~Lhaq-------I~EKDAmIkVLQqrs 166 (205)
T PF12240_consen 144 RIKALHAQ-------IAEKDAMIKVLQQRS 166 (205)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 99999864 357789999987443
No 45
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.34 E-value=25 Score=32.88 Aligned_cols=93 Identities=23% Similarity=0.302 Sum_probs=57.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------HHH
Q 018564 159 SPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA--------AQL 230 (354)
Q Consensus 159 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERl--------rql 230 (354)
..++....+|.++|.-|.+.+|.-=+..|+- ..-+..+-++||++++||.++......|..-+ ..|
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~------q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL 123 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKS------QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL 123 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 4466677888888999999988766665542 22344566899999999998866654433321 122
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 231 SVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 231 ~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
.-+...-......++..+..|..+|+-
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333344455555566666655554
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.71 E-value=22 Score=39.30 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 255 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 255 (354)
.|.|+.|.||.+.++.....||+++.+..|.+.-+..-++++.-+-.|...|
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL 596 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSAL 596 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3677888889899999999999999999999776665233433333333333
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.47 E-value=32 Score=33.16 Aligned_cols=95 Identities=27% Similarity=0.428 Sum_probs=66.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHH
Q 018564 161 IKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAELEARAAQL----SVEA 234 (354)
Q Consensus 161 l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~--~~~~rLReKEeEIera~rrn~ELEERlrql----~~E~ 234 (354)
+.+-+.|++.+.+.+.+.++....... ..+-.+=+. ..-..+.....||+.+..+|..||.+|..+ ..+.
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~~~----~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~ 257 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEKSS----EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhcccccccccccccccc----cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH
Confidence 345556777777777766665554432 222211111 344567888899999999999999999766 4577
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 018564 235 QVWQAKARAQEATAASLQAQLQQAI 259 (354)
Q Consensus 235 QaWq~~A~~nEA~a~~Lra~LqQ~l 259 (354)
+.|+.....-|+.+..|+..+.+.+
T Consensus 258 ~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 258 EEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHH
Confidence 7899998899998988888887644
No 48
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.23 E-value=0.51 Score=46.06 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=35.4
Q ss_pred cccccccccc----ccceEEeCCCCcccchhhHHhC----CCCCCCcccccc
Q 018564 304 GPACKGCRKR----VASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~----~~~vlLLPCrHlclC~~C~~~l----~~CPvCR~~i~~ 347 (354)
.-.|.+|.+. ..+++|-||+|+ +|.+|..++ ..||+|..+...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 4589999884 455888999998 899999885 499999887654
No 49
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=85.92 E-value=1.5 Score=42.54 Aligned_cols=48 Identities=29% Similarity=0.502 Sum_probs=24.4
Q ss_pred ccccccccccccceEEeCC-----CCcccchhhHHh--C--CCCCCCcccccceEEEe
Q 018564 304 GPACKGCRKRVASVVLLPC-----RHLCVCTECDRV--V--QACPLCFNVRDSSVEVF 352 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPC-----rHlclC~~C~~~--l--~~CPvCR~~i~~sV~V~ 352 (354)
...|.||...+.-.++.+= ||+ .|..|... + -.||.|.......+..|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4689999999888777654 455 79999765 2 39999998887776654
No 50
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.34 E-value=0.45 Score=47.22 Aligned_cols=42 Identities=24% Similarity=0.615 Sum_probs=32.8
Q ss_pred ccccccccccccceEEeCC--CCcccchhhHHh-CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPC--RHLCVCTECDRV-VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPC--rHlclC~~C~~~-l~~CPvCR~~i~~ 347 (354)
-..|.||++.-.--++ -| ||+ +|..|... ...||.||.+|..
T Consensus 48 lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 4589999987655444 45 799 89999955 5799999999873
No 51
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=85.27 E-value=0.26 Score=50.60 Aligned_cols=41 Identities=24% Similarity=0.563 Sum_probs=0.0
Q ss_pred cccceEEeCCCCcccchhh----H--------HhCCCCCCCcccccc---eEEEee
Q 018564 313 RVASVVLLPCRHLCVCTEC----D--------RVVQACPLCFNVRDS---SVEVFL 353 (354)
Q Consensus 313 ~~~~vlLLPCrHlclC~~C----~--------~~l~~CPvCR~~i~~---sV~V~l 353 (354)
.+.+.+|-||||+|.=+.= . .....||+|-.++.+ .|+++|
T Consensus 356 ~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 356 GPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------------
T ss_pred CCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence 4567889999998531110 0 012499999999876 566554
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=0.4 Score=49.33 Aligned_cols=45 Identities=31% Similarity=0.612 Sum_probs=36.1
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
.+.-.|.||+..--.-+..||||. .|..|-.. -..||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 456789999988777777799999 89999333 4599999998764
No 53
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.06 E-value=39 Score=35.78 Aligned_cols=103 Identities=21% Similarity=0.337 Sum_probs=76.0
Q ss_pred hhhhhhhHH----HHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 158 ASPIKRQRD----ELDQFLQAQGEQLRRALA----EKRQ-RHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAA 228 (354)
Q Consensus 158 ~~~l~qQ~~----EID~~i~~q~ErLR~~L~----E~rq-rh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlr 228 (354)
.++|+-|+. .+-.|.+.|.+.++..++ |.+. .+-...+.++...+-+||.+...-+.+..++..+++|-=+
T Consensus 327 ~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~ 406 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENK 406 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554443 444555566666666554 4555 6677788899999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHH
Q 018564 229 QLSVEAQVWQAKARAQEA-----------TAASLQAQLQQAIM 260 (354)
Q Consensus 229 ql~~E~QaWq~~A~~nEA-----------~a~~Lra~LqQ~l~ 260 (354)
.|...-+.|+..++.-|. .+..|+.+|.-++.
T Consensus 407 ~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 407 KLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 999999999988755444 46667766666554
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.63 E-value=0.36 Score=47.98 Aligned_cols=46 Identities=28% Similarity=0.530 Sum_probs=39.0
Q ss_pred cccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccceEEE
Q 018564 305 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 351 (354)
Q Consensus 305 ~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V 351 (354)
-.|.||..--.+-|+--|+|. +|..|+.. -..|++|...+.++..+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred ccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 469999998888888899999 89999876 25899999999887653
No 55
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=84.11 E-value=1 Score=35.12 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=32.0
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHh-----CCCCCCCcccccc
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 347 (354)
....|.||++--.+-+++||||. .+..|-.. -..||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45689999999999999999976 88888654 3579999988775
No 56
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=83.39 E-value=0.97 Score=45.58 Aligned_cols=52 Identities=21% Similarity=0.494 Sum_probs=32.4
Q ss_pred CCcccccccccc-------------------cccceEEeCCCCcccchhhH-Hh-----------CCCCCCCcccccc--
Q 018564 301 PVSGPACKGCRK-------------------RVASVVLLPCRHLCVCTECD-RV-----------VQACPLCFNVRDS-- 347 (354)
Q Consensus 301 ~~~~~~C~IC~~-------------------~~~~vlLLPCrHlclC~~C~-~~-----------l~~CPvCR~~i~~-- 347 (354)
+...+.|.+|+. .+.+..|-||+|+|.=+.=. +. -.+||+|-....+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 455678888876 34455678999986422221 11 1399999887654
Q ss_pred -eEEEe
Q 018564 348 -SVEVF 352 (354)
Q Consensus 348 -sV~V~ 352 (354)
.|+++
T Consensus 418 ~~ikli 423 (429)
T KOG3842|consen 418 GYIKLI 423 (429)
T ss_pred ceEEEE
Confidence 45544
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=83.34 E-value=0.37 Score=45.69 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=38.5
Q ss_pred cccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccceEEE
Q 018564 305 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 351 (354)
Q Consensus 305 ~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V 351 (354)
-.|.||...-.+-|+--|||. +|..|+.. -..|-+|.....+...|
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 389999998888888899998 89999876 35999999877766543
No 58
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=81.75 E-value=30 Score=35.82 Aligned_cols=40 Identities=30% Similarity=0.531 Sum_probs=31.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 018564 153 LSDDLASPIKRQRDELDQFLQAQGE----------QLRRALAEKRQRHYR 192 (354)
Q Consensus 153 l~d~l~~~l~qQ~~EID~~i~~q~E----------rLR~~L~E~rqrh~r 192 (354)
-||||.++|++.+..+-+-|.++.+ +|-+.|+|-|+||-.
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999888877777776654 455678888999843
No 59
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=0.68 Score=46.50 Aligned_cols=42 Identities=33% Similarity=0.823 Sum_probs=29.5
Q ss_pred cccccccccccc-eEEeCCCCcccchhhHHh--CCCCCCCcccccc
Q 018564 305 PACKGCRKRVAS-VVLLPCRHLCVCTECDRV--VQACPLCFNVRDS 347 (354)
Q Consensus 305 ~~C~IC~~~~~~-vlLLPCrHlclC~~C~~~--l~~CPvCR~~i~~ 347 (354)
-.|.-|.---.- --++||.|+ +|.+|+.. .+.||.|-..|..
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred EeecccCCcceeeecccccchh-hhhhhhhcCccccCcCcccHHHH
Confidence 467778543221 124799998 99999877 4699999876543
No 60
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.78 E-value=0.75 Score=48.70 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=30.8
Q ss_pred cccccccccc-----------------ccceEEeCCCCcccchhhHHh-CC----CCCCCcccccc
Q 018564 304 GPACKGCRKR-----------------VASVVLLPCRHLCVCTECDRV-VQ----ACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~-----------------~~~vlLLPCrHlclC~~C~~~-l~----~CPvCR~~i~~ 347 (354)
..-|+||+.. .++.+|-||.|+ .=..|-.. |. .||+||.++..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4579999872 234667799998 66777543 32 89999998753
No 61
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.12 E-value=0.84 Score=50.65 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=33.1
Q ss_pred cccccccccccceEE---eCCCCcccchhhHHh----CCCCCCCcccccceEE
Q 018564 305 PACKGCRKRVASVVL---LPCRHLCVCTECDRV----VQACPLCFNVRDSSVE 350 (354)
Q Consensus 305 ~~C~IC~~~~~~vlL---LPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~ 350 (354)
..|.+|...-.+-+. .+|.|. +|..|... ..+||+||..+..++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 467777765555333 489998 99999765 4799999987766553
No 62
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.98 E-value=44 Score=38.42 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHH
Q 018564 210 EAEVEKATRRNAELEARAAQLSVEAQVW-------QAKARAQEATAASLQAQLQQA 258 (354)
Q Consensus 210 EeEIera~rrn~ELEERlrql~~E~QaW-------q~~A~~nEA~a~~Lra~LqQ~ 258 (354)
|+=++..+-+|.+||||++.|+.|.... -.++..|......||..|+.+
T Consensus 447 E~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 447 EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777889999999999998866443 345566666677777777775
No 63
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.40 E-value=22 Score=37.86 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=16.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~ 232 (354)
-|+++++|+++|++|+=+|..
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~i 397 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVMI 397 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888877766
No 64
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=73.68 E-value=1.4 Score=48.37 Aligned_cols=40 Identities=35% Similarity=0.745 Sum_probs=34.0
Q ss_pred cccccccccccceEEeCCCCcccchhhHHhC------CCCCCCccccc
Q 018564 305 PACKGCRKRVASVVLLPCRHLCVCTECDRVV------QACPLCFNVRD 346 (354)
Q Consensus 305 ~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l------~~CPvCR~~i~ 346 (354)
..|.+|.+ ..+.++.+|+|. .|.+|-... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 888899999999 899997652 37999998654
No 65
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=73.49 E-value=92 Score=30.20 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 164 QRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 164 Q~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~ 232 (354)
=+.|||+-|... +.....+....+......++.+.+.++........+++.++.++..
T Consensus 106 F~~eI~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 106 FEKEIDQKLDEI-----------RQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777555444 3333444444444444555555555555555555555555555544
No 66
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=73.33 E-value=40 Score=29.48 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 202 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 202 ~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
...+++.++.++++....+..|++++..+..|...++..-+.-+.....+...+..
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888888888888888888888877777665555555444444433
No 67
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=73.04 E-value=16 Score=31.09 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 193 ALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 193 ~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~ 234 (354)
..|...-...-.++++...++++...+..++.+.++.|..|+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444445567888999999999999999999999998775
No 68
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=71.96 E-value=1.5 Score=39.21 Aligned_cols=44 Identities=30% Similarity=0.711 Sum_probs=34.5
Q ss_pred cccccccccccceEEe-C---CCCcccchhhHHhC-------CCCCCCcccccceE
Q 018564 305 PACKGCRKRVASVVLL-P---CRHLCVCTECDRVV-------QACPLCFNVRDSSV 349 (354)
Q Consensus 305 ~~C~IC~~~~~~vlLL-P---CrHlclC~~C~~~l-------~~CPvCR~~i~~sV 349 (354)
-.|-||.+...+--|| | || +-+|..|...+ .+||+|++...++-
T Consensus 81 YeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4799999987776665 2 55 67999998775 49999999887764
No 69
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.60 E-value=43 Score=34.00 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 018564 220 NAELEARAAQLSVEAQVWQAK 240 (354)
Q Consensus 220 n~ELEERlrql~~E~QaWq~~ 240 (354)
.+.|||..++|..|..+++.+
T Consensus 379 k~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 379 KKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666654
No 70
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=70.98 E-value=5.4 Score=30.92 Aligned_cols=31 Identities=39% Similarity=0.438 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 211 AEVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 211 eEIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
+|++-.+.+..||++|..+|..||...+..+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4888889999999999999999998766543
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=70.40 E-value=1.5e+02 Score=31.34 Aligned_cols=70 Identities=27% Similarity=0.358 Sum_probs=40.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 159 SPIKRQRDELDQFLQAQGEQLRRALAEKRQRH-----YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 159 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh-----~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~ 232 (354)
++++++..|.|+=+- +++..|++.=+++ ...++.|--+++-.+|-+||.||.+..+.|-.|.|+.-+..+
T Consensus 2 ~~~~s~~s~~dqr~~----~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 2 APLYSQKSENDQRLI----DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred chhhhhhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777764322 2222222222221 233445555677788999999999999998887655444443
No 72
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=70.11 E-value=51 Score=25.81 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHhHH
Q 018564 173 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ------VWQAKARAQEA 246 (354)
Q Consensus 173 ~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~Q------aWq~~A~~nEA 246 (354)
+...+++...|.+.++.|.+.|...... ..-=++.|.-...+++....+..+|+.|..... .+....+-...
T Consensus 13 ~~~i~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~n 90 (103)
T PF00804_consen 13 REDIDKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKN 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHH
Confidence 3445566677777777777666655532 112233444455567777888888888888754 33344455555
Q ss_pred HHHHHHHHHHHH
Q 018564 247 TAASLQAQLQQA 258 (354)
Q Consensus 247 ~a~~Lra~LqQ~ 258 (354)
...+|...+..+
T Consensus 91 q~~~L~~kf~~~ 102 (103)
T PF00804_consen 91 QVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666665554
No 73
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.68 E-value=1e+02 Score=29.16 Aligned_cols=28 Identities=11% Similarity=0.372 Sum_probs=14.6
Q ss_pred hhhh-hhhhhhhHHHHHHHHHHHHHHHHH
Q 018564 154 SDDL-ASPIKRQRDELDQFLQAQGEQLRR 181 (354)
Q Consensus 154 ~d~l-~~~l~qQ~~EID~~i~~q~ErLR~ 181 (354)
..|| ..+|+-|+.-+|++|....+|+..
T Consensus 102 ~~eirR~~LeAQka~~eR~ia~~~~ra~~ 130 (192)
T PF11180_consen 102 DVEIRRAQLEAQKAQLERLIAESEARANR 130 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 345555666666666555444433
No 74
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.21 E-value=56 Score=25.94 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 018564 203 ARLLREKEAEVEKAT 217 (354)
Q Consensus 203 ~~rLReKEeEIera~ 217 (354)
.++|++||+.|+...
T Consensus 4 ~~~l~EKDe~Ia~L~ 18 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLM 18 (74)
T ss_pred HHHHHhHHHHHHHHH
Confidence 456677777664443
No 75
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=68.59 E-value=1.9 Score=43.56 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=39.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh-----CCCCCCCcccccceEEE
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVEV 351 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~sV~V 351 (354)
.-.|.+|+.+..-+.+.||+|-++|..|... ...||+|.........|
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 4579999999999999999999999988554 35799998877665544
No 76
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=68.42 E-value=1.5 Score=42.89 Aligned_cols=39 Identities=26% Similarity=0.757 Sum_probs=28.0
Q ss_pred cccccccccc---ccce--EEeC-CCCcccchhhHHhC-----CCCC--CCcc
Q 018564 304 GPACKGCRKR---VASV--VLLP-CRHLCVCTECDRVV-----QACP--LCFN 343 (354)
Q Consensus 304 ~~~C~IC~~~---~~~v--lLLP-CrHlclC~~C~~~l-----~~CP--vCR~ 343 (354)
+..|++|..- ..+| ++-| |.|. +|..|...+ .-|| .|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 4689999762 3333 3448 9999 899998874 4899 6754
No 77
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=67.98 E-value=80 Score=35.41 Aligned_cols=53 Identities=28% Similarity=0.367 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 201 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 256 (354)
Q Consensus 201 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~Lq 256 (354)
.+.+|||+|+-|-+.+.+|+-++ |+.|..|.+....+-...|.|-..++-++.
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~---i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~ 526 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGEL---ITKLQSEENKLKSILRDKEETEKLLQETIE 526 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 78899999999998887776543 355555555555555555554444444333
No 78
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=67.97 E-value=1.4e+02 Score=30.16 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=45.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018564 157 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEE-------SIARLLREKEAEVEKATRRNAELEARAAQ 229 (354)
Q Consensus 157 l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~-------~~~~rLReKEeEIera~rrn~ELEERlrq 229 (354)
..++|.+.+.|+.-+|+.+..+|-..++ ++=+.||.+|+. .++.+|.-.|+-|.||+ -.-.|.|||+.
T Consensus 25 av~qL~~~r~~teelIr~rVrq~V~hVq----aqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir-~G~~LVekM~~ 99 (324)
T PF12126_consen 25 AVSQLGRARADTEELIRARVRQVVAHVQ----AQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIR-TGGALVEKMKL 99 (324)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hHHHHHHHHHH
Confidence 3678999999999999999887765554 445788888885 33444444444444442 23455555544
Q ss_pred H
Q 018564 230 L 230 (354)
Q Consensus 230 l 230 (354)
-
T Consensus 100 Y 100 (324)
T PF12126_consen 100 Y 100 (324)
T ss_pred h
Confidence 3
No 79
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=67.20 E-value=4.9 Score=41.00 Aligned_cols=33 Identities=30% Similarity=0.604 Sum_probs=24.6
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHhC-----------------CCCCCCcccc
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----------------QACPLCFNVR 345 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l-----------------~~CPvCR~~i 345 (354)
.....|..|+-++.. |.+|..+- -.||.||+..
T Consensus 301 ~~~~~C~~C~CRPmW-----------C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMW-----------CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccCCCCccccccchH-----------HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 456789999876654 88997661 2999999874
No 80
>smart00338 BRLZ basic region leucin zipper.
Probab=66.33 E-value=54 Score=24.72 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVW 237 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaW 237 (354)
+.+.|.+++.+...|.+|..++..|..|...+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555443
No 81
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=66.17 E-value=2.2e+02 Score=32.75 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 256 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~Lq 256 (354)
+.|--.+.-|..+.+.|.+|.+.|.++.-+...|-.+.++..-+...|+..|.
T Consensus 452 kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 452 KQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333444455678889999999999999999998887777766666665543
No 82
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=66.02 E-value=3.9 Score=43.96 Aligned_cols=41 Identities=22% Similarity=0.547 Sum_probs=34.3
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh---------CCCCCCCcccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV---------VQACPLCFNVR 345 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~---------l~~CPvCR~~i 345 (354)
...|.+|.+...+.+.-.|.|. +|+.|... --+||+|..+.
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 5689999999999999999998 89999743 13999997654
No 83
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=65.58 E-value=2.6 Score=31.48 Aligned_cols=42 Identities=21% Similarity=0.676 Sum_probs=24.1
Q ss_pred ccccccccccceEEeCCCCcccchhhHHhC----CCCCCCcccccceE
Q 018564 306 ACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSV 349 (354)
Q Consensus 306 ~C~IC~~~~~~vlLLPCrHlclC~~C~~~l----~~CPvCR~~i~~sV 349 (354)
-|+.|+-.....+ -|.--.+|..|-..| ..||+|..++...|
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 5899988887744 576666999998875 59999998876554
No 84
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=65.24 E-value=80 Score=27.11 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHH
Q 018564 166 DELDQFLQAQGEQLRRALAEKRQ---RHYRALLGAAEESIARLLREKE----AEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 166 ~EID~~i~~q~ErLR~~L~E~rq---rh~r~ll~avE~~~~~rLReKE----eEIera~rrn~ELEERlrql~ 231 (354)
.-||.++..-.+.++..+.+.+. .+...+=.+++..+.+-|.... +||+.+..|..+|+.+++.|.
T Consensus 44 ~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 44 KRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555554 3334555566666666666554 788888888888888887764
No 85
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.24 E-value=1.5e+02 Score=29.00 Aligned_cols=86 Identities=27% Similarity=0.306 Sum_probs=50.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 153 LSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 153 l~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~ 232 (354)
++|-..+.+..++.-||+|+..--.++-..+.+--++-.+.. --++.+..-|++-+.|+.+-+....|=+++.-.+..
T Consensus 16 l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~--~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieq 93 (246)
T KOG4657|consen 16 LGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQ--VELENLKADLRETENELVKVNELKTEKEARQMGIEQ 93 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788999999999999998773333333333322211111 112234455777777777666655555555555555
Q ss_pred HHHHHHHH
Q 018564 233 EAQVWQAK 240 (354)
Q Consensus 233 E~QaWq~~ 240 (354)
|.-+.|..
T Consensus 94 eik~~q~e 101 (246)
T KOG4657|consen 94 EIKATQSE 101 (246)
T ss_pred HHHHHHHH
Confidence 55554443
No 86
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=63.31 E-value=93 Score=26.65 Aligned_cols=59 Identities=32% Similarity=0.421 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 172 LQAQGEQLRRALAEKRQRHY--RALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 172 i~~q~ErLR~~L~E~rqrh~--r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~ 234 (354)
|+.|+.-|+.++-|-+.+.. ..-|..-| ..||-.+.|++...-+|.-|+-||..|..|-
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke----~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKE----QALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777766554432 11111111 2356666677777777877777776655544
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.01 E-value=1.5e+02 Score=35.15 Aligned_cols=90 Identities=24% Similarity=0.299 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018564 166 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 245 (354)
Q Consensus 166 ~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nE 245 (354)
.++|.=+....++++....+..+ ..++|+----.-+..++.++++++.++.+++..|++.++-+..+++ .+.-..
T Consensus 464 ~~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~----~~~~~~ 538 (1317)
T KOG0612|consen 464 EEMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND----NAADSL 538 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 35666666666777666666655 2233332222233456667777777777777777766665533332 333345
Q ss_pred HHHHHHHHHHHHHHH
Q 018564 246 ATAASLQAQLQQAIM 260 (354)
Q Consensus 246 A~a~~Lra~LqQ~l~ 260 (354)
..++.|+.+|+....
T Consensus 539 ~kv~~~rk~le~~~~ 553 (1317)
T KOG0612|consen 539 EKVNSLRKQLEEAEL 553 (1317)
T ss_pred hhHHHHHHHHHHhhh
Confidence 567788888887544
No 88
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.79 E-value=71 Score=25.87 Aligned_cols=31 Identities=35% Similarity=0.541 Sum_probs=22.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLSVEAQVWQAKAR 242 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~E~QaWq~~A~ 242 (354)
|...+..-+-+|+-+-.+|..|-..||.+-+
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566777778899999999998843
No 89
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=62.75 E-value=6.2 Score=28.86 Aligned_cols=36 Identities=28% Similarity=0.721 Sum_probs=23.3
Q ss_pred ccccccc--cccceEEeCCC-----CcccchhhHHh------CCCCCCCc
Q 018564 306 ACKGCRK--RVASVVLLPCR-----HLCVCTECDRV------VQACPLCF 342 (354)
Q Consensus 306 ~C~IC~~--~~~~vlLLPCr-----HlclC~~C~~~------l~~CPvCR 342 (354)
.|.||++ .+.+.++.||. |+ +=..|... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 56677889995 21 12355433 24899995
No 90
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.38 E-value=73 Score=30.10 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVEAQ 235 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E~Q 235 (354)
.++.+.+.+|.....+|.+|.+.+..+..|+.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666666555555443
No 91
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=62.00 E-value=78 Score=25.80 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018564 202 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 239 (354)
Q Consensus 202 ~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~ 239 (354)
.-.+|+.|++||++.+.....|..+|......+-.-++
T Consensus 10 L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~ 47 (76)
T PF11544_consen 10 LKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQD 47 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778999999999999998888888776665544433
No 92
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=62.00 E-value=73 Score=35.95 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 174 AQGEQLRRALAEKRQ--RHYRALLGAAEE---SIARLLREKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 174 ~q~ErLR~~L~E~rq--rh~r~ll~avE~---~~~~rLReKEeEIera~rrn~ELEERlrql~~ 232 (354)
+++.|++..++|.-. .++.-=|.++|. ...--||++|+||+|.+..+.-|.--+++|-.
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357777777777643 223333444443 23445999999999999999999888877765
No 93
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=61.72 E-value=2e+02 Score=29.71 Aligned_cols=77 Identities=29% Similarity=0.374 Sum_probs=46.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 018564 159 SPIKRQRDELDQFLQAQGEQLRRALAEKRQ---------RHYRALLGAAEE----------SIARLLREKEAEVEKATRR 219 (354)
Q Consensus 159 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~rq---------rh~r~ll~avE~----------~~~~rLReKEeEIera~rr 219 (354)
.-++.++.|.++ |+.|+++|...|-..|. .|.-.++.-.++ +..+--+|||+|-...+|.
T Consensus 92 es~~e~q~e~~q-L~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 92 ESVEERQQESEQ-LQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 345666667776 46777777766655442 334444443333 3345567788877777776
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018564 220 NAELEARAAQLSVEAQV 236 (354)
Q Consensus 220 n~ELEERlrql~~E~Qa 236 (354)
.+|--.+..-|..|-|+
T Consensus 171 LaE~layqq~L~~eyQa 187 (401)
T PF06785_consen 171 LAEALAYQQELNDEYQA 187 (401)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 66666566666667665
No 94
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=61.19 E-value=39 Score=32.04 Aligned_cols=48 Identities=27% Similarity=0.463 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018564 177 EQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEA 225 (354)
Q Consensus 177 ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEE 225 (354)
+.-|..|+|+|+.-.-..|.-.|. .-+.+-.|++||.++...|.+|.|
T Consensus 106 e~YWk~lAE~RR~AL~eaL~ENe~-Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 106 ENYWKELAEERRKALEEALEENEK-LHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777776433333333332 334455667777666666655554
No 95
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=61.11 E-value=1.2e+02 Score=33.06 Aligned_cols=68 Identities=29% Similarity=0.311 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHH
Q 018564 174 AQGEQLRRALAEKRQRHYRA--LLGAAEESI---ARLLREKEAEVEKATRRNAELEARAAQLSVEAQ-VWQAKA 241 (354)
Q Consensus 174 ~q~ErLR~~L~E~rqrh~r~--ll~avE~~~---~~rLReKEeEIera~rrn~ELEERlrql~~E~Q-aWq~~A 241 (354)
+...+|+-.+.+.|+++--+ .+..++..+ ..+|=++++|+.-++++...||+-++.|..|+- .|-.++
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44556666666666665544 333333332 467778889999999999999999999888873 444443
No 96
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=61.00 E-value=2.3e+02 Score=30.10 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018564 220 NAELEARAAQLSVEAQVWQAKARAQEA 246 (354)
Q Consensus 220 n~ELEERlrql~~E~QaWq~~A~~nEA 246 (354)
..+|..+|+.|..-...|......+..
T Consensus 380 l~~~~~~~~~le~~~~~~~~~~~~~~~ 406 (582)
T PF09731_consen 380 LAELNSRLKALEEALDARSEAEDENRR 406 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665555544
No 97
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.31 E-value=1.3 Score=45.01 Aligned_cols=44 Identities=23% Similarity=0.467 Sum_probs=34.6
Q ss_pred cccccccccccc-cceEEeCCCCcccchhhHHhC-----CCCCCCcccccc
Q 018564 303 SGPACKGCRKRV-ASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~-~~vlLLPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 347 (354)
....|.||++-- ..+...-|.|. +|..|.+.. ..||.||....+
T Consensus 42 ~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccc
Confidence 456899999853 34566789999 899998772 599999987654
No 98
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=59.94 E-value=48 Score=32.53 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=13.1
Q ss_pred hhhhhhhhhhhhHHHHHHH
Q 018564 153 LSDDLASPIKRQRDELDQF 171 (354)
Q Consensus 153 l~d~l~~~l~qQ~~EID~~ 171 (354)
.+|.+..+|++--.++|.+
T Consensus 158 ~Gd~l~~eLqkr~~~v~~l 176 (289)
T COG4985 158 DGDPLERELQKRLLEVETL 176 (289)
T ss_pred cCcHHHHHHHHHHHHHHHH
Confidence 4677778888766666644
No 99
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.94 E-value=1.2e+02 Score=31.76 Aligned_cols=50 Identities=32% Similarity=0.409 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018564 170 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRN 220 (354)
Q Consensus 170 ~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn 220 (354)
.|--.|.|||--.|.|.-++|...+. -+...+++.+|..+.|.+|++-|.
T Consensus 126 ~~~~aq~erlvgeiaenerqhavema-elsekia~emr~lede~~r~~mrt 175 (637)
T KOG4421|consen 126 IFEEAQKERLVGEIAENERQHAVEMA-ELSEKIADEMRDLEDETERIAMRT 175 (637)
T ss_pred HHHHHHhhHHHHHHHhhhHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678999999999999999988875 455588999999999999998764
No 100
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=59.94 E-value=45 Score=29.06 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=27.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 211 AEVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 211 eEIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
||+|-.+.+..||+||..+|+.|+...+..+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4788888889999999999999999887765
No 101
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=59.55 E-value=3.7 Score=30.48 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=12.0
Q ss_pred CCCCcccchhhHHhC-----CCCCCCcccc
Q 018564 321 PCRHLCVCTECDRVV-----QACPLCFNVR 345 (354)
Q Consensus 321 PCrHlclC~~C~~~l-----~~CPvCR~~i 345 (354)
||++. +|..|...+ ..||-||.+.
T Consensus 19 ~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 56666 899997664 3899999874
No 102
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.49 E-value=2.7e+02 Score=30.38 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018564 208 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 246 (354)
Q Consensus 208 eKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA 246 (354)
....|++.+...+.++.+|+++|..+...+....++++.
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~ 241 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEK 241 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666655555544443
No 103
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.81 E-value=99 Score=32.96 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=22.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 156 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQR 189 (354)
Q Consensus 156 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqr 189 (354)
.|.+++++-+.|++.+++ ++++|+..-+..|+|
T Consensus 63 Tlva~~k~~r~~~~~l~~-~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLIS-ENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 456778888888888764 566666666655543
No 104
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=57.25 E-value=42 Score=28.31 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 239 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~ 239 (354)
.+++++..+++.+..++.+|+++-+.|..|-..|+.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467778888888888888888888888888888875
No 105
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=56.94 E-value=79 Score=25.32 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=12.8
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~ 231 (354)
.+.+++.+..+||.||..|.
T Consensus 58 ~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 58 VLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555666667777776654
No 106
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.84 E-value=43 Score=32.22 Aligned_cols=48 Identities=29% Similarity=0.332 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRN-------AELEARAAQLSVEAQVWQAKARAQEATAASL 251 (354)
Q Consensus 204 ~rLReKEeEIera~rrn-------~ELEERlrql~~E~QaWq~~A~~nEA~a~~L 251 (354)
.||++.++|..++.... ..|++.++++..|...-...+..-+.+...|
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL 66 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRL 66 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444 4555555555555554444444444443333
No 107
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=56.49 E-value=2.7e+02 Score=29.95 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 018564 202 IARLLREKEAEVEKATRRNAELEARAA----QLSVEA-----------QVWQAKARAQEATAASLQAQLQQAIMSG 262 (354)
Q Consensus 202 ~~~rLReKEeEIera~rrn~ELEERlr----ql~~E~-----------QaWq~~A~~nEA~a~~Lra~LqQ~l~~~ 262 (354)
+-+-|-+||+||+|+-....|||.-.. .|..|- ..+|..-+.|.+.---|+..|+.++++.
T Consensus 451 mdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 451 MDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999888884432 222221 2255666777777788888888888764
No 108
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.59 E-value=1e+02 Score=24.48 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=17.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 018564 218 RRNAELEARAAQLSVEAQVWQAK 240 (354)
Q Consensus 218 rrn~ELEERlrql~~E~QaWq~~ 240 (354)
..|.+|++...+|..|-.+|+.+
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777778888888876
No 109
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=55.54 E-value=70 Score=26.72 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 196 GAAEESIARLLRE---KEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 196 ~avE~~~~~rLRe---KEeEIera~rrn~ELEERlrql~~E 233 (354)
..+|+.+.+|+-. -|+|||++..-.+.||+++.+++..
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666533 5899999999999999999988764
No 110
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.29 E-value=1e+02 Score=34.02 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=7.8
Q ss_pred cccccccchHHHH
Q 018564 104 TGLRLSFGDQQQR 116 (354)
Q Consensus 104 TGLrLs~~~~~~~ 116 (354)
-++.++++|++++
T Consensus 332 r~~~~~~~ddH~R 344 (652)
T COG2433 332 RTLKISVSDDHER 344 (652)
T ss_pred hhcCCCCCCchHH
Confidence 3456777766543
No 111
>PRK04863 mukB cell division protein MukB; Provisional
Probab=54.33 E-value=4.2e+02 Score=32.29 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaWq 238 (354)
+.+.+++++.+..+..++++++..+..+...|+
T Consensus 364 Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 364 LEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555555554
No 112
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=54.26 E-value=7.5 Score=31.19 Aligned_cols=28 Identities=32% Similarity=0.719 Sum_probs=20.4
Q ss_pred cccccccccc--ccceEEeCCCCcccchhhH
Q 018564 304 GPACKGCRKR--VASVVLLPCRHLCVCTECD 332 (354)
Q Consensus 304 ~~~C~IC~~~--~~~vlLLPCrHlclC~~C~ 332 (354)
...|.+|... ...+++.||+|. +-..|.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~ 107 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHV-VHYSCI 107 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeE-Eecccc
Confidence 3569999875 355778899987 566664
No 113
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=54.21 E-value=41 Score=33.67 Aligned_cols=42 Identities=14% Similarity=0.378 Sum_probs=26.3
Q ss_pred ccccccccccccceEEeCC----CC-cccchhhHHh--C--CCCCCCcccc
Q 018564 304 GPACKGCRKRVASVVLLPC----RH-LCVCTECDRV--V--QACPLCFNVR 345 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPC----rH-lclC~~C~~~--l--~~CPvCR~~i 345 (354)
...|.||...+..-++..- |+ +..|.-|... + -.||.|....
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~ 234 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK 234 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC
Confidence 4589999888864333222 11 2368888655 2 3899998754
No 114
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=53.95 E-value=1.1e+02 Score=26.80 Aligned_cols=71 Identities=31% Similarity=0.413 Sum_probs=35.6
Q ss_pred CCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 018564 145 QSPSLLSFLSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESI----ARLLREKEAEVEKATRRN 220 (354)
Q Consensus 145 ~~~~~~s~l~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~----~~rLReKEeEIera~rrn 220 (354)
.|...+.|| |+|-. .++...++|.. .+++.++..+.+.|. -|.+++..+ ..+--..+..|..+.+|.
T Consensus 65 nP~tvLALL-DElE~-~~~~i~~~~~~--~e~~~~a~~~~~l~~-----~Le~ae~~~~~~~~~~~~~~e~~~~~~~~ri 135 (139)
T PF13935_consen 65 NPATVLALL-DELER-AQQRIAELEQE--CENEDIALDVQKLRV-----ELEAAEKRIAAELAEQAEAYEGEIADYAKRI 135 (139)
T ss_pred cchHHHHHH-HHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355555532 32221 23334455555 566666666666654 334444333 233334555666666666
Q ss_pred HHHH
Q 018564 221 AELE 224 (354)
Q Consensus 221 ~ELE 224 (354)
+|||
T Consensus 136 aEle 139 (139)
T PF13935_consen 136 AELE 139 (139)
T ss_pred HhcC
Confidence 6664
No 115
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=53.80 E-value=1.6e+02 Score=26.23 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=51.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHhHHHHHHH--
Q 018564 154 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRH--YRALLGAAEESIARLLRE-KEA-EVEKATRRNAELEARA-- 227 (354)
Q Consensus 154 ~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh--~r~ll~avE~~~~~rLRe-KEe-EIera~rrn~ELEERl-- 227 (354)
+=.|+..|.++..++|.= .+.|+..|.+.-+.+ ...++..+-.....+.+. ++. -|.. .-..+|+.++
T Consensus 20 gC~i~~~L~k~~~~v~~~----i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~--~~s~~l~~~~~~ 93 (146)
T PF08702_consen 20 GCGIQDFLDKYERDVDKD----IQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYN--QYSKSLRKMIIY 93 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCH
T ss_pred cchHHHHHHHHccchHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHH--HHHHHHHHHHHH
Confidence 336677777777777654 456777777766655 344556666666666655 222 2322 2233445444
Q ss_pred ------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 228 ------AQLSVEAQVWQAKARAQEATAASLQAQLQQA 258 (354)
Q Consensus 228 ------rql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~ 258 (354)
-.-..--+.-|.+-..+...+.-|+....+.
T Consensus 94 ~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 94 ILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122445555555555555555444443
No 116
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=53.46 E-value=1.8e+02 Score=26.77 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=21.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhCCCCCCCcccccceEE
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVE 350 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l~~CPvCR~~i~~sV~ 350 (354)
...|.+| ||+ |.. ..-..||+|..++..+..
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~P~~CPiCga~k~~F~~ 164 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EAPEVCPICGAPKEKFEK 164 (166)
T ss_pred EEEcCCC------------CCc--ccC--CCCCcCCCCCChHHHhhc
Confidence 3678875 665 444 445799999998876543
No 117
>smart00338 BRLZ basic region leucin zipper.
Probab=53.36 E-value=95 Score=23.37 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 219 RNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 255 (354)
Q Consensus 219 rn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 255 (354)
...+||.++..|..|+..++.....-+.-+..|+..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999998887777666666666544
No 118
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=53.18 E-value=3.5e+02 Score=31.17 Aligned_cols=28 Identities=43% Similarity=0.453 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 209 KEAEVEKATRRNAELEARAAQLSVEAQV 236 (354)
Q Consensus 209 KEeEIera~rrn~ELEERlrql~~E~Qa 236 (354)
|.++.|+..||.+|=|+|.+|-..|.+.
T Consensus 954 k~~k~e~e~kRK~eEeqr~~qee~e~~l 981 (1259)
T KOG0163|consen 954 KRAKAEMETKRKAEEEQRKAQEEEERRL 981 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3445566666677766666665555443
No 119
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.68 E-value=2.4e+02 Score=27.81 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=41.0
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 163 RQRDELDQF---LQAQGEQLRRALAEKRQRHYRALLGAAEE----SIARLLR---EKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 163 qQ~~EID~~---i~~q~ErLR~~L~E~rqrh~r~ll~avE~----~~~~rLR---eKEeEIera~rrn~ELEERlrql~~ 232 (354)
.|.+|+|-+ ++...+.|-..+.++++.-..+++..+-. ++..+++ .-..||.+-+.-..+|+|.|..|.+
T Consensus 135 ~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 135 SQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566544 44444444444444444333333322222 2222222 1234666666677778888877777
Q ss_pred HHHHHHHHHH
Q 018564 233 EAQVWQAKAR 242 (354)
Q Consensus 233 E~QaWq~~A~ 242 (354)
|.+.-+.-+.
T Consensus 215 eV~~L~~~~~ 224 (258)
T PF15397_consen 215 EVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHhhc
Confidence 7776655544
No 120
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=52.28 E-value=70 Score=32.08 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018564 211 AEVEKATRRNAELEARAAQLSVEAQVWQAK 240 (354)
Q Consensus 211 eEIera~rrn~ELEERlrql~~E~QaWq~~ 240 (354)
-|++-..+||.+|.+++..|.-|-+-.+++
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777776665544443
No 121
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=51.72 E-value=9.6 Score=45.65 Aligned_cols=46 Identities=26% Similarity=0.571 Sum_probs=32.6
Q ss_pred Ccccccccccccc---cceEEeCCCCcccchhhHHh--------------CCCCCCCcccccce
Q 018564 302 VSGPACKGCRKRV---ASVVLLPCRHLCVCTECDRV--------------VQACPLCFNVRDSS 348 (354)
Q Consensus 302 ~~~~~C~IC~~~~---~~vlLLPCrHlclC~~C~~~--------------l~~CPvCR~~i~~s 348 (354)
..+.+|.||+... +-.+-|-|+|. +=..|-.. +-.||+|..+|+-+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 4467999999853 44677899987 44444333 23899999998754
No 122
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=51.30 E-value=1.5e+02 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 207 REKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 207 ReKEeEIera~rrn~ELEERlrql~~ 232 (354)
+.||+|..+...+..+-+++++++..
T Consensus 101 kkKD~Ea~~L~~KLkeEq~kv~~ME~ 126 (152)
T PF11500_consen 101 KKKDAEAMRLAEKLKEEQEKVAEMER 126 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889988888888888888766543
No 123
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.14 E-value=57 Score=27.52 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E 233 (354)
+.+.+.+.|+++...+|.+|++.++.|...
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 445567778888888888888888888763
No 124
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.91 E-value=9.5 Score=37.95 Aligned_cols=53 Identities=26% Similarity=0.569 Sum_probs=34.3
Q ss_pred ccccccCCCccccccccccccc----------ceEEeCCCCcccchhhHH------hCCCCCCCcccccc
Q 018564 294 PDRVVSVPVSGPACKGCRKRVA----------SVVLLPCRHLCVCTECDR------VVQACPLCFNVRDS 347 (354)
Q Consensus 294 ~~r~~~~~~~~~~C~IC~~~~~----------~vlLLPCrHlclC~~C~~------~l~~CPvCR~~i~~ 347 (354)
|+.+.....++..|.||...-- ++.=|.|+|. .=+.|-. +..+||.|+..++.
T Consensus 214 ~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 214 PSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 3333333456779999976421 3345789997 5566643 35799999987653
No 125
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=50.63 E-value=1.4e+02 Score=24.52 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018564 207 REKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQ 244 (354)
Q Consensus 207 ReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~n 244 (354)
.+.++||+++......|.++|.+..+....|.....+-
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999998765443
No 126
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=49.81 E-value=1.7e+02 Score=31.58 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 175 QGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQ 254 (354)
Q Consensus 175 q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~ 254 (354)
+.+||++.+++-.+.+.|-- --|++.+++|.++.++...|+-+|+...--..+--..-+.-|+--+.|..+
T Consensus 29 ef~rl~k~fed~~ek~~r~~---------ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~ 99 (604)
T KOG3564|consen 29 EFIRLRKDFEDFEEKWKRTD---------AELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQ 99 (604)
T ss_pred HHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34456666666665554432 225567778888888888887777655544444333334444444555555
Q ss_pred HHH
Q 018564 255 LQQ 257 (354)
Q Consensus 255 LqQ 257 (354)
.++
T Consensus 100 i~~ 102 (604)
T KOG3564|consen 100 IQL 102 (604)
T ss_pred HHH
Confidence 444
No 127
>PRK12704 phosphodiesterase; Provisional
Probab=49.48 E-value=3.6e+02 Score=28.90 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=2.8
Q ss_pred ceEEeCC
Q 018564 316 SVVLLPC 322 (354)
Q Consensus 316 ~vlLLPC 322 (354)
.++++.|
T Consensus 251 ~~v~ls~ 257 (520)
T PRK12704 251 EAVILSG 257 (520)
T ss_pred CeEEEec
Confidence 3444433
No 128
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=49.47 E-value=3.5e+02 Score=28.74 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=51.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 160 PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEE------SIARLLREKEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 160 ~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~------~~~~rLReKEeEIera~rrn~ELEERlrql~~E 233 (354)
+|++-+.|-|+||..++.---.+|+-++..|--.+-.-+|. .+-..=|+--+|++...|...-|-|...|-+.|
T Consensus 364 ELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLE 443 (593)
T KOG4807|consen 364 ELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLE 443 (593)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677788888777777777777777777666655554 222233455677777877777777777666666
Q ss_pred HHHH
Q 018564 234 AQVW 237 (354)
Q Consensus 234 ~QaW 237 (354)
+.+.
T Consensus 444 nahL 447 (593)
T KOG4807|consen 444 NAHL 447 (593)
T ss_pred HHHH
Confidence 6543
No 129
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=48.67 E-value=2.4e+02 Score=26.54 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHH
Q 018564 162 KRQRDELDQFLQ 173 (354)
Q Consensus 162 ~qQ~~EID~~i~ 173 (354)
+.-+.+|+.+|.
T Consensus 37 ~~l~~~i~~~l~ 48 (302)
T PF10186_consen 37 EELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHH
Confidence 334445555544
No 130
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=48.00 E-value=1.4e+02 Score=23.91 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=29.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 157 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLRE 208 (354)
Q Consensus 157 l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLRe 208 (354)
....++.+...+-.-|....++|+..|++.++ .|+..++..-..++..
T Consensus 29 ~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~----~ll~~l~~~~~~~~~~ 76 (127)
T smart00502 29 IIQEVEENAADVEAQIKAAFDELRNALNKRKK----QLLEDLEEQKENKLKV 76 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34456666667777777777888888877763 4444444443333333
No 131
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=47.51 E-value=4.2e+02 Score=29.16 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=53.4
Q ss_pred hhhhhhHHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 159 SPIKRQRDEL-DQFLQAQGEQL----RRALAEKRQRHYRALLGAAEES---IARLLREKEAEVEKATRRNAELEARAAQL 230 (354)
Q Consensus 159 ~~l~qQ~~EI-D~~i~~q~ErL----R~~L~E~rqrh~r~ll~avE~~---~~~rLReKEeEIera~rrn~ELEERlrql 230 (354)
-+|+.|-.|+ |.|+++.+++| ..-.+..+++-...-+.-++.. +..+|..|+.|+.+....+..+...|.+.
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy 242 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY 242 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888 79999999985 3344444444444444444432 34567788888888877776666666554
Q ss_pred HHHHHHHHHHHHHhHH
Q 018564 231 SVEAQVWQAKARAQEA 246 (354)
Q Consensus 231 ~~E~QaWq~~A~~nEA 246 (354)
.+ +|+.++.++|+
T Consensus 243 ~a---~~q~l~~e~e~ 255 (617)
T PF15070_consen 243 VA---AYQQLASEKEE 255 (617)
T ss_pred HH---HHHHHHHHHHH
Confidence 33 23444444444
No 132
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=47.41 E-value=6.5 Score=40.26 Aligned_cols=41 Identities=24% Similarity=0.583 Sum_probs=29.0
Q ss_pred cccccccc----ccceEEeCCCCcccchhhHHhCC-----CCCCCcccccc
Q 018564 306 ACKGCRKR----VASVVLLPCRHLCVCTECDRVVQ-----ACPLCFNVRDS 347 (354)
Q Consensus 306 ~C~IC~~~----~~~vlLLPCrHlclC~~C~~~l~-----~CPvCR~~i~~ 347 (354)
.|..|++. ..+..-.|||-. +|..|...++ .||-||...+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 48888773 344444566654 8999988763 99999986554
No 133
>PRK09039 hypothetical protein; Validated
Probab=47.17 E-value=3.2e+02 Score=27.60 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=31.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018564 213 VEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 261 (354)
Q Consensus 213 Iera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 261 (354)
|.+++.....|++++..|..+-.+=...-++.+..+..|+..|+.+++.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666666665555566666777777777777754
No 134
>PRK11637 AmiB activator; Provisional
Probab=46.79 E-value=3.4e+02 Score=27.80 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
+|++.+.+|..+.++..+|++.|..+.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 135
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=46.49 E-value=1.1e+02 Score=28.53 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018564 209 KEAEVEKATRRNAELEARAAQLSVEAQ 235 (354)
Q Consensus 209 KEeEIera~rrn~ELEERlrql~~E~Q 235 (354)
|++-|+.+.++..+|++++++|..|-+
T Consensus 144 r~~~i~~a~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 144 RQELIEEAKKKREELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666666555543
No 136
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=46.39 E-value=42 Score=27.55 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 207 REKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 207 ReKEeEIera~rrn~ELEERlrql~~ 232 (354)
--.+.||++++.|..||.+|++.|..
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456999999999999999999876
No 137
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.33 E-value=84 Score=36.68 Aligned_cols=46 Identities=26% Similarity=0.142 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Q 018564 193 ALLGAAEESIARLLREKEAEVEKATR-RNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 193 ~ll~avE~~~~~rLReKEeEIera~r-rn~ELEERlrql~~E~QaWq 238 (354)
+.|..+|..-+++|+||=+|.++.-+ .+..|||||+.+..-+++-|
T Consensus 378 ~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 378 EQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44455566667778888777777644 36677888777665555443
No 138
>PHA03415 putative internal virion protein; Provisional
Probab=46.13 E-value=73 Score=36.23 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=63.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 018564 154 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEK-----------RQRHYRALLGAAEESIARLLREKEAEVEKATRRN-- 220 (354)
Q Consensus 154 ~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~-----------rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn-- 220 (354)
.|+-++.+..-+.|.|-+++.-.|-|-++|.|+ |.+.++..=.++|+.+.+-|-..++|--+..+-.
T Consensus 298 n~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~d 377 (1019)
T PHA03415 298 NDNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMAD 377 (1019)
T ss_pred CccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCC
Confidence 456677888899999999999999999999995 4556777778888888888755566655543332
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018564 221 AELEARAAQLSVEAQVWQAK 240 (354)
Q Consensus 221 ~ELEERlrql~~E~QaWq~~ 240 (354)
-.+...+++|..|.+.|.+.
T Consensus 378 p~~dp~IarLAd~~~~~he~ 397 (1019)
T PHA03415 378 PNLDPDIARLADESDAFHGQ 397 (1019)
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 23445566777777776665
No 139
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=45.82 E-value=4.2e+02 Score=28.58 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 163 RQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAE 199 (354)
Q Consensus 163 qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE 199 (354)
.-+..+-|+|..++.+.|..=..-+--..|-|+.-|+
T Consensus 178 ~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvk 214 (508)
T KOG0717|consen 178 ESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVK 214 (508)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666665544444444455554444
No 140
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=45.16 E-value=5e+02 Score=29.31 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 208 EKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 208 eKEeEIera~rrn~ELEERlrql~~ 232 (354)
+-.+++...+.+.-+|++.|..+..
T Consensus 159 aHq~~l~sL~~k~~~Le~~L~~le~ 183 (739)
T PF07111_consen 159 AHQEALASLTSKAEELEKSLESLET 183 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655544
No 141
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.15 E-value=2.7e+02 Score=26.27 Aligned_cols=47 Identities=19% Similarity=0.120 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 252 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 252 (354)
..+...+++.......+|++..++|..|...=+.....-++....++
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555554444443333333333
No 142
>PLN02189 cellulose synthase
Probab=44.72 E-value=15 Score=42.32 Aligned_cols=43 Identities=30% Similarity=0.784 Sum_probs=32.8
Q ss_pred ccccccccccc----ccceEEeCCCCcc---cchhhHHh-----CCCCCCCccccc
Q 018564 303 SGPACKGCRKR----VASVVLLPCRHLC---VCTECDRV-----VQACPLCFNVRD 346 (354)
Q Consensus 303 ~~~~C~IC~~~----~~~vlLLPCrHlc---lC~~C~~~-----l~~CPvCR~~i~ 346 (354)
+...|.||.+. ...=+|+.|. -| +|..|..- -+.||-|++...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~-~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACN-ECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeec-cCCCccccchhhhhhhcCCccCcccCCchh
Confidence 45589999997 4445788885 34 89999755 369999998765
No 143
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=44.47 E-value=4.3e+02 Score=28.31 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=3.8
Q ss_pred cceEEeCCC
Q 018564 315 ASVVLLPCR 323 (354)
Q Consensus 315 ~~vlLLPCr 323 (354)
..++++.|+
T Consensus 244 p~~v~ls~f 252 (514)
T TIGR03319 244 PEAVILSGF 252 (514)
T ss_pred CCeEEecCC
Confidence 334444443
No 144
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=44.32 E-value=1.9e+02 Score=24.15 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 208 EKEAEVEKATRRNAELEARAAQLSVEAQV 236 (354)
Q Consensus 208 eKEeEIera~rrn~ELEERlrql~~E~Qa 236 (354)
+|+.||.++......|...+..+....+.
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444444444444444444333
No 145
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=43.96 E-value=94 Score=36.41 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=15.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 018564 215 KATRRNAELEARAAQLSVEAQV 236 (354)
Q Consensus 215 ra~rrn~ELEERlrql~~E~Qa 236 (354)
....++.+|++.++++.++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 188 ELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777788887777766544
No 146
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=43.93 E-value=2.2e+02 Score=24.81 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 018564 228 AQLSVEAQVWQAKARAQEATAA 249 (354)
Q Consensus 228 rql~~E~QaWq~~A~~nEA~a~ 249 (354)
.++.+|-++|+.+-.+.+..+.
T Consensus 97 ERl~~E~~sL~kve~eQ~~~i~ 118 (120)
T PF14931_consen 97 ERLRSEYESLQKVEQEQNELIQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888777666554
No 147
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=43.80 E-value=70 Score=24.88 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018564 196 GAAEESIARLLREKEAEVEKATRRNAELE 224 (354)
Q Consensus 196 ~avE~~~~~rLReKEeEIera~rrn~ELE 224 (354)
.-+...=+..|+..-+||++..++|.||-
T Consensus 13 ~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 13 LFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33344445566777789999999999875
No 148
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=43.44 E-value=2.6e+02 Score=28.35 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018564 168 LDQFLQAQGEQLRRALAEKRQRH--YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 245 (354)
Q Consensus 168 ID~~i~~q~ErLR~~L~E~rqrh--~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nE 245 (354)
+.+.|-.++|.|-+..+-+++.- ...|.+ -++|+-||.++|.|.++|.-+|.|... . ++-.--|
T Consensus 10 ~~~~i~k~nee~~~~~~~~~k~~e~~qkl~s-----r~~~~~ekke~i~r~n~k~~d~v~~~~---~------~~~~~~e 75 (359)
T KOG4398|consen 10 LKQTICKGNEEMEKNSEGLLKTKEKNQKLYS-----RAQRHQEKKEKIQRHNRKLGDLVEKKT---I------DLRSHYE 75 (359)
T ss_pred HHHHHhcCcHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcchHHHHHH---H------HHHHHHH
Confidence 44555566666666665554421 222332 467889999999999888777766542 1 3333345
Q ss_pred HHHHHHHHHHHHH
Q 018564 246 ATAASLQAQLQQA 258 (354)
Q Consensus 246 A~a~~Lra~LqQ~ 258 (354)
-.++--++.++++
T Consensus 76 rl~~lr~shi~el 88 (359)
T KOG4398|consen 76 RLANLRRSHILEL 88 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555556664
No 149
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=43.14 E-value=6.1e+02 Score=30.67 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018564 208 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 246 (354)
Q Consensus 208 eKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA 246 (354)
..|.-+..++.+..||+-+|..|..+...--.-|++-|-
T Consensus 1609 ~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~ 1647 (1758)
T KOG0994|consen 1609 AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEK 1647 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 334444455566677777766666554433334444333
No 150
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=43.11 E-value=88 Score=29.14 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=6.0
Q ss_pred HHhHHHHHHHHHHH
Q 018564 218 RRNAELEARAAQLS 231 (354)
Q Consensus 218 rrn~ELEERlrql~ 231 (354)
.||.+|++++..|.
T Consensus 54 ~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 54 ERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 151
>PRK11637 AmiB activator; Provisional
Probab=42.54 E-value=3.9e+02 Score=27.33 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 260 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~ 260 (354)
|+..+.+|+.+.++..+++..|+.+..|-..-+......+..+..++..|.+.+.
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555544445555555555555555555443
No 152
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=41.99 E-value=83 Score=29.94 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAA 228 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlr 228 (354)
++|.+-+.|||.+..+.+.|++|+.
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566677777777777777777753
No 153
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=41.63 E-value=1.1e+02 Score=29.54 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E 233 (354)
.+.++....||++.+++.+|++|+++|...
T Consensus 112 ~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~ 141 (232)
T KOG2483|consen 112 RKSATQQQDIEDLSRENRKLKARLEQLSLP 141 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344555667899999999999999988743
No 154
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=41.59 E-value=1.6e+02 Score=22.58 Aligned_cols=48 Identities=27% Similarity=0.225 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018564 173 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQ 229 (354)
Q Consensus 173 ~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrq 229 (354)
--...+++.+|..--+|.+..|+.-.. ...|.+.+.+.|.||...|+|
T Consensus 11 p~~~~~~W~~L~~~l~rY~~vL~~R~~---------l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 11 PDEKIRLWDALENFLKRYNKVLLDRAA---------LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777777777776664443 667889999999999988876
No 155
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=41.42 E-value=2.5e+02 Score=26.08 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018564 170 QFLQAQGEQLRRAL-------AEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 242 (354)
Q Consensus 170 ~~i~~q~ErLR~~L-------~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~ 242 (354)
+|+..-.+|||..+ ..+.++......+-+...|-.-.++.++||.++.++..-||+ +...+..|+.+
T Consensus 79 Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~----~~~~~k~LrnK-- 152 (171)
T PF04799_consen 79 QFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEE----IQSKSKTLRNK-- 152 (171)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--
Confidence 45555555555544 234455555555666666666677788888777666555543 33344445544
Q ss_pred HhHHHHHHHHHHHHH
Q 018564 243 AQEATAASLQAQLQQ 257 (354)
Q Consensus 243 ~nEA~a~~Lra~LqQ 257 (354)
++-|...|+.
T Consensus 153 -----a~~L~~eL~~ 162 (171)
T PF04799_consen 153 -----ANWLESELER 162 (171)
T ss_dssp -----HHHHHHHHHH
T ss_pred -----HHHHHHHHHH
Confidence 4445555554
No 156
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=41.39 E-value=11 Score=38.61 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=16.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhHH
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDR 333 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~ 333 (354)
+..|.+|.++.+..-+- +-.|..|..
T Consensus 15 ~ElCPVCGDkVSGYHYG----LLTCESCKG 40 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHYG----LLTCESCKG 40 (475)
T ss_pred ccccccccCccccceee----eeehhhhhh
Confidence 35899999988763210 125777743
No 157
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.85 E-value=4.3e+02 Score=27.91 Aligned_cols=44 Identities=30% Similarity=0.363 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 191 YRALLGAAEESIA---RLLREKEAEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 191 ~r~ll~avE~~~~---~rLReKEeEIera~rrn~ELEERlrql~~E~ 234 (354)
...-|..+|..+. .-|++-+.++.+..+++.+++.++..|..+-
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444445554332 3477778888888888888888888887765
No 158
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.59 E-value=5.5e+02 Score=28.89 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHH
Q 018564 162 KRQRDELDQFLQ 173 (354)
Q Consensus 162 ~qQ~~EID~~i~ 173 (354)
.....+++.+|.
T Consensus 507 ~~~~~~~~~li~ 518 (771)
T TIGR01069 507 GEFKEEINVLIE 518 (771)
T ss_pred HhhHHHHHHHHH
Confidence 344556666664
No 159
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=40.59 E-value=2.6e+02 Score=24.66 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=40.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 155 DDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 155 d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~ 234 (354)
.++.+++.+-..|+++|++.+.+|-...-+. -.+ .+.+++.......+.+|++..+....
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~---------ae~-----------a~~~L~~~~~~~~~i~e~~~kl~~~~ 82 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQE---------AEA-----------AEAELAELKELYAEIEEKIEKLKQDS 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-----------HHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 3588899999999999998887664422221 122 33455555566667777777777765
Q ss_pred H
Q 018564 235 Q 235 (354)
Q Consensus 235 Q 235 (354)
.
T Consensus 83 ~ 83 (126)
T PF09403_consen 83 K 83 (126)
T ss_dssp G
T ss_pred c
Confidence 3
No 160
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=40.43 E-value=13 Score=37.99 Aligned_cols=46 Identities=26% Similarity=0.514 Sum_probs=36.7
Q ss_pred ccccccccccccceEE-eCCCCcccchhhHHhC----CCCCCCcccccceEE
Q 018564 304 GPACKGCRKRVASVVL-LPCRHLCVCTECDRVV----QACPLCFNVRDSSVE 350 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlL-LPCrHlclC~~C~~~l----~~CPvCR~~i~~sV~ 350 (354)
+..|.+|..--.+-+. ..|+|. +|..|.... ..||.|+..++..-.
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred cccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhc
Confidence 5689999998888777 599999 899997662 489999887765443
No 161
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.40 E-value=3.9e+02 Score=26.67 Aligned_cols=109 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018564 152 FLSDDLASPIKRQRDELDQFLQAQGEQLRR----ALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 227 (354)
Q Consensus 152 ~l~d~l~~~l~qQ~~EID~~i~~q~ErLR~----~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERl 227 (354)
.+-+.+-.+++.-..|.|.|...- +++.. .-....-..-..-+..-|......|++.|.|-+.+.+...+|++..
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL-~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFL-KKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHhHHHH------HHHHHHHHHHHHh
Q 018564 228 AQLSV-EAQVWQAKARAQEATA------ASLQAQLQQAIMS 261 (354)
Q Consensus 228 rql~~-E~QaWq~~A~~nEA~a------~~Lra~LqQ~l~~ 261 (354)
+.+.. |.+.|+......-... .+|.++++.+..+
T Consensus 88 ~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 88 EELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 162
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=40.21 E-value=1.5e+02 Score=21.73 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 207 REKEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 207 ReKEeEIera~rrn~ELEERlrql~~E 233 (354)
.+.+.++..+...|..|...+..|..|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555556666666666666666544
No 163
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.83 E-value=58 Score=30.81 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLSVEAQV 236 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~E~Qa 236 (354)
|+.+++|..++||++|..+..++..
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666666655543
No 164
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=39.83 E-value=3.3e+02 Score=27.39 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018564 220 NAELEARAAQLSVEAQV 236 (354)
Q Consensus 220 n~ELEERlrql~~E~Qa 236 (354)
-.+||||++++..|-..
T Consensus 118 ~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 118 ISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 58999999999887543
No 165
>PRK14140 heat shock protein GrpE; Provisional
Probab=39.44 E-value=1.2e+02 Score=28.36 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018564 211 AEVEKATRRNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 211 eEIera~rrn~ELEERlrql~~E~QaWq 238 (354)
.+|+.+..+..+|++++.++.+|....+
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~r 71 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433
No 166
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=39.26 E-value=1.4e+02 Score=21.07 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 225 ARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 225 ERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
.+++.+..=|+-|+..-...|+-|.+|.+.|..
T Consensus 2 ~ql~~v~e~N~qWq~YD~qRE~YV~~L~~rl~e 34 (35)
T PF12180_consen 2 QQLRDVLEKNQQWQKYDQQREAYVRGLLARLKE 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 456677777899999999999999999998865
No 167
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.21 E-value=16 Score=37.74 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=28.1
Q ss_pred Cccccccc----ccccccceEEeCCCCcccchhhHHhCC-------CCCCCcccc
Q 018564 302 VSGPACKG----CRKRVASVVLLPCRHLCVCTECDRVVQ-------ACPLCFNVR 345 (354)
Q Consensus 302 ~~~~~C~I----C~~~~~~vlLLPCrHlclC~~C~~~l~-------~CPvCR~~i 345 (354)
.+.-.|+| |-+...-+. |+|||+ +|+.=..++. +||+|-...
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~-L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMM-LICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cceeecccchhhccCCCCCee-eeccce-ecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 44567888 444444444 489998 7877766642 899996543
No 168
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=39.09 E-value=5.5e+02 Score=30.05 Aligned_cols=85 Identities=25% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018564 172 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASL 251 (354)
Q Consensus 172 i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~L 251 (354)
++.+.+.++..+++.+.... -+..-......++.+.+++++.......+|.+++..+..+...|......-+.....+
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 784 (1163)
T COG1196 707 LRRQLEELERQLEELKRELA--ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 018564 252 QAQLQQA 258 (354)
Q Consensus 252 ra~LqQ~ 258 (354)
...+++.
T Consensus 785 ~~~~~~~ 791 (1163)
T COG1196 785 EEKRQAL 791 (1163)
T ss_pred HHHHHHH
No 169
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.60 E-value=8.8 Score=26.16 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=12.5
Q ss_pred CCCCCCCcccccceEE
Q 018564 335 VQACPLCFNVRDSSVE 350 (354)
Q Consensus 335 l~~CPvCR~~i~~sV~ 350 (354)
...||+|..+...+.+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 3699999998776654
No 170
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=38.55 E-value=6.3e+02 Score=28.54 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=40.5
Q ss_pred hhhhhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHH
Q 018564 159 SPIKRQRDELDQFLQAQ-------------GEQLRRALAEKRQRHYRALLGAAE--E------SIARLLREKEAEVEKAT 217 (354)
Q Consensus 159 ~~l~qQ~~EID~~i~~q-------------~ErLR~~L~E~rqrh~r~ll~avE--~------~~~~rLReKEeEIera~ 217 (354)
.++.+-+.|+||+..++ -.+||..|.|.+-|-.|-|-..-| + +-.--||+--.|.|-+.
T Consensus 48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~K 127 (717)
T PF09730_consen 48 QELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLK 127 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45566677888876654 557899999999888887764433 2 22223555555555444
Q ss_pred HHhHHHHH
Q 018564 218 RRNAELEA 225 (354)
Q Consensus 218 rrn~ELEE 225 (354)
-.+.-|+|
T Consensus 128 hei~rl~E 135 (717)
T PF09730_consen 128 HEIKRLEE 135 (717)
T ss_pred HHHHHHHH
Confidence 44433333
No 171
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.36 E-value=5.8e+02 Score=28.14 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E 233 (354)
=||+-+||+.-.|.+..|.|.|.+|..+
T Consensus 326 erE~~EeIe~~~ke~kdLkEkv~~lq~~ 353 (654)
T KOG4809|consen 326 ERERLEEIESFRKENKDLKEKVNALQAE 353 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999874
No 172
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.32 E-value=1.7e+02 Score=21.95 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 220 NAELEARAAQLSVEAQVWQAKARAQEATAASLQ 252 (354)
Q Consensus 220 n~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 252 (354)
..+||+++..|..|+..+......-...+..|+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665544444334444443
No 173
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=38.24 E-value=2.7e+02 Score=24.24 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=50.8
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 153 LSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 153 l~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~ 232 (354)
+-.-|.+.|.+-..||..+ +.+.++| +..|..-...|++..+ ..+++.....+..+|+..++.|..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l-~~el~~l----~~~r~~l~~Eiv~l~~---------~~e~~~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASL-QEELARL----EAERDELREEIVKLME---------ENEELRALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888653 4444443 3334444445554333 444444455555555555555555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 233 EAQVWQAKARAQEATAASLQAQLQQA 258 (354)
Q Consensus 233 E~QaWq~~A~~nEA~a~~Lra~LqQ~ 258 (354)
.-++--.+-.+..-.+.-|++-+..+
T Consensus 83 ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 83 RYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 55554455445555555666655554
No 174
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.23 E-value=6.1e+02 Score=28.36 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 225 ARAAQLSVEAQVWQAKARAQEATAASLQAQL 255 (354)
Q Consensus 225 ERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 255 (354)
.|.++|..|...-+.-.+..|.....|...+
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443444444444444433
No 175
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.58 E-value=1.3e+02 Score=27.38 Aligned_cols=36 Identities=33% Similarity=0.762 Sum_probs=21.4
Q ss_pred ccccccccccceEEeCCCCcc------cchhhHHhC--------CCCCCCccc
Q 018564 306 ACKGCRKRVASVVLLPCRHLC------VCTECDRVV--------QACPLCFNV 344 (354)
Q Consensus 306 ~C~IC~~~~~~vlLLPCrHlc------lC~~C~~~l--------~~CPvCR~~ 344 (354)
.|-||....-. =-|||.| +|..|...+ .+|-.|+..
T Consensus 67 tC~IC~KTKFA---DG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 67 TCGICHKTKFA---DGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred chhhhhhcccc---cccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 68888654321 2588876 366665442 377777653
No 176
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.33 E-value=1.2e+02 Score=32.49 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018564 210 EAEVEKATRRNAELEARAAQLSVEAQVWQA 239 (354)
Q Consensus 210 EeEIera~rrn~ELEERlrql~~E~QaWq~ 239 (354)
..|++.+.++..++|++|+.+..|+..-+.
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 345555556677777777766666554433
No 177
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=36.74 E-value=2.3e+02 Score=22.91 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHhHH
Q 018564 173 QAQGEQLRRALAEKRQRHYRALLGAAE--ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ----AKARAQEA 246 (354)
Q Consensus 173 ~~q~ErLR~~L~E~rqrh~r~ll~avE--~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq----~~A~~nEA 246 (354)
+..+.+++..+.+.++-|...+ .+.. ..+..+|. ..++.++++..++.++|+.|..++..-. ...+....
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l-~~~~~~~~~~~~l~---~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~ 89 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELL-TPPDADKELREKLE---RLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKA 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHH
Confidence 3344445555555554444443 3332 22333333 3556666777778888888776554211 12334445
Q ss_pred HHHHHHHHHHHHHH
Q 018564 247 TAASLQAQLQQAIM 260 (354)
Q Consensus 247 ~a~~Lra~LqQ~l~ 260 (354)
....|...+..++.
T Consensus 90 q~~~L~~~f~~~m~ 103 (117)
T smart00503 90 QTEKLRKKFKEVMN 103 (117)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666655553
No 178
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.43 E-value=10 Score=25.43 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.6
Q ss_pred CCCCCCCcccccceEE
Q 018564 335 VQACPLCFNVRDSSVE 350 (354)
Q Consensus 335 l~~CPvCR~~i~~sV~ 350 (354)
-..||+|..+...++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 4599999998877654
No 179
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=36.29 E-value=1.4e+02 Score=29.30 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~ 232 (354)
-++|+++.||.+..+....||-||+.|.-
T Consensus 71 ~~IRdLNDeINkL~rEK~~WE~rI~~LGG 99 (255)
T PF06246_consen 71 FQIRDLNDEINKLIREKRHWERRIKELGG 99 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36999999999999999999999998764
No 180
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.00 E-value=2.5e+02 Score=23.13 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=23.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
|++.++.-..+|+..-.+|..|-++|+.+-
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556789999999999999999883
No 181
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.92 E-value=3.1e+02 Score=24.27 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 196 GAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 196 ~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
..+| ..-+|+.-.|+|++.+.++..+..++++++...+...-...+.-|.-...+...++.
T Consensus 73 ~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 73 SNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344 677889999999999999988888888888876666555554444444444444443
No 182
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.78 E-value=3.4e+02 Score=31.24 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=5.1
Q ss_pred cccchHHH
Q 018564 108 LSFGDQQQ 115 (354)
Q Consensus 108 Ls~~~~~~ 115 (354)
.+|+|.++
T Consensus 312 ~TFEDKrk 319 (1118)
T KOG1029|consen 312 VTFEDKRK 319 (1118)
T ss_pred cchhhhhH
Confidence 56777654
No 183
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=35.64 E-value=2.5e+02 Score=25.14 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=37.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 018564 212 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSG 262 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~~ 262 (354)
-++.+.+--..|+..+.-+..|...++.+++.-+..+..|+..|...+...
T Consensus 41 K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 41 KADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444445555555566777778888888899999999999999988764
No 184
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=35.57 E-value=2.4e+02 Score=26.87 Aligned_cols=61 Identities=25% Similarity=0.322 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 167 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEE---------SIARLLREKEAEVEKATRRNAELEARAA 228 (354)
Q Consensus 167 EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~---------~~~~rLReKEeEIera~rrn~ELEERlr 228 (354)
.++.+ +.+.|+||..|..-|++.-.....--.+ +|++==|+.-.---.|-+||..||.+|+
T Consensus 132 ~~~~l-~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 132 ELGSL-RREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred cchhH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34443 4677888888887777665555432222 3333333433444456778888887765
No 185
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=35.29 E-value=4.1e+02 Score=27.59 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHH
Q 018564 200 ESIARLLREKEAEVEKATRRNAELEARAAQLSVEA-QVWQ 238 (354)
Q Consensus 200 ~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~-QaWq 238 (354)
..+..++...+.++....+...+|++++..+.... ..|.
T Consensus 95 ~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWl 134 (390)
T PRK10920 95 KQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWL 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH
Confidence 34556677777788888888888888888776433 5565
No 186
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=35.13 E-value=3.2e+02 Score=24.77 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 166 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATR 218 (354)
Q Consensus 166 ~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~r 218 (354)
.||+.+=....+-|+..|.+.-+.+-.....-+|....++..+|+.-|+++.+
T Consensus 94 ~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~ 146 (154)
T PF14738_consen 94 EEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEK 146 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777778888888888888888888888888888888888877755
No 187
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=35.09 E-value=8.3 Score=38.98 Aligned_cols=45 Identities=22% Similarity=0.503 Sum_probs=33.4
Q ss_pred ccccccccccccce-EEeCCCCcccchhhHHh----CCCCCCCcccccceE
Q 018564 304 GPACKGCRKRVASV-VLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 349 (354)
Q Consensus 304 ~~~C~IC~~~~~~v-lLLPCrHlclC~~C~~~----l~~CPvCR~~i~~sV 349 (354)
-..|.+|..=-.+. .+.-|-|. +|+.|--. ...||.|...|..+.
T Consensus 15 ~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 45899997754442 33469998 89999654 479999999988775
No 188
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=34.82 E-value=5.5e+02 Score=27.21 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 201 SIARLLREKEAEVEKATRR---------NAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 260 (354)
Q Consensus 201 ~~~~rLReKEeEIera~rr---------n~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~ 260 (354)
....|+.+|+.||.+++.. ..|||.|++.+..=--.=|..-..-...-++|+-+|+.+..
T Consensus 359 ~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 359 PLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLET 427 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHH
Confidence 4566788899999888554 46888888888732211122222222344667777777653
No 189
>KOG3068 consensus mRNA splicing factor [RNA processing and modification]
Probab=34.77 E-value=1.2e+02 Score=29.85 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 190 HYRALLGAAEESIAR---------LLREKEAEVEKATRRNAELEARAAQL 230 (354)
Q Consensus 190 h~r~ll~avE~~~~~---------rLReKEeEIera~rrn~ELEERlrql 230 (354)
|-++++.-|..++++ +||+.+.||.++.|....||-||+.|
T Consensus 46 wRrqIvreIskKva~Iqn~gLgE~rirDLNDEiNkLlrEk~~WE~rI~el 95 (268)
T KOG3068|consen 46 WRRQIVREISKKVARIQNAGLGEFRIRDLNDEINKLLREKHHWEVRIREL 95 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335555666666654 69999999999999999999999888
No 190
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=34.66 E-value=7.2e+02 Score=29.46 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=57.2
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018564 167 ELDQFLQAQ--GEQLRRALAEKRQRHYRALLGAAE------ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 167 EID~~i~~q--~ErLR~~L~E~rqrh~r~ll~avE------~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq 238 (354)
.=|+.++.. +-++-..|+|.+.+-+-++++..- ....++.++.+++|.++.+.+++||++-+-|..|...-+
T Consensus 370 ts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~ 449 (1195)
T KOG4643|consen 370 TSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLL 449 (1195)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336677754 445667788888877777765432 246778899999999999999999999999999887766
Q ss_pred HHHH
Q 018564 239 AKAR 242 (354)
Q Consensus 239 ~~A~ 242 (354)
.--.
T Consensus 450 ~e~~ 453 (1195)
T KOG4643|consen 450 EETS 453 (1195)
T ss_pred HHHH
Confidence 5433
No 191
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.40 E-value=6.4e+02 Score=28.44 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHH
Q 018564 161 IKRQRDELDQFLQ 173 (354)
Q Consensus 161 l~qQ~~EID~~i~ 173 (354)
+.....+++.+|.
T Consensus 511 ~~~~~~~~~~li~ 523 (782)
T PRK00409 511 IGEDKEKLNELIA 523 (782)
T ss_pred HhhhhhHHHHHHH
Confidence 3455567777765
No 192
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.94 E-value=16 Score=33.49 Aligned_cols=25 Identities=24% Similarity=0.696 Sum_probs=20.5
Q ss_pred cchhhHHh-CCCCCCCcccccceEEE
Q 018564 327 VCTECDRV-VQACPLCFNVRDSSVEV 351 (354)
Q Consensus 327 lC~~C~~~-l~~CPvCR~~i~~sV~V 351 (354)
+|..|... +..||-|..+|.+.-+|
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 68888776 68999999999986544
No 193
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=33.83 E-value=3.9e+02 Score=30.45 Aligned_cols=60 Identities=35% Similarity=0.456 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 172 LQAQGEQLRRALAEKRQR------HYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 172 i~~q~ErLR~~L~E~rqr------h~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
+..+++++-..|+..|+| |...|..++++...--++|.-+-++++++.-.||+---++|.
T Consensus 168 l~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~ 233 (916)
T KOG0249|consen 168 LEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLE 233 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777788777775 566677777766655566655566666655555554444433
No 194
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.42 E-value=6.8e+02 Score=28.23 Aligned_cols=11 Identities=18% Similarity=-0.013 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 018564 176 GEQLRRALAEK 186 (354)
Q Consensus 176 ~ErLR~~L~E~ 186 (354)
.++|-..|++.
T Consensus 513 ~~~li~~L~~~ 523 (771)
T TIGR01069 513 INVLIEKLSAL 523 (771)
T ss_pred HHHHHHHHHHH
Confidence 33343344333
No 195
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=33.41 E-value=11 Score=38.11 Aligned_cols=43 Identities=19% Similarity=0.448 Sum_probs=27.8
Q ss_pred cccccccccc---ccceEEeCCCCcccchhhHHh--------C-------------------CCCCCCcccccc
Q 018564 304 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV--------V-------------------QACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~---~~~vlLLPCrHlclC~~C~~~--------l-------------------~~CPvCR~~i~~ 347 (354)
.+.|+||+-. .-.++.-+|.|+ +=..|... + ..|||||..|.-
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 4567776553 334788899998 33445322 1 289999998753
No 196
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.37 E-value=1.2e+02 Score=23.01 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVW 237 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaW 237 (354)
+..+..||....++..+|.++.+.|..|-..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555544
No 197
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=33.02 E-value=3.3e+02 Score=27.00 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018564 166 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELE 224 (354)
Q Consensus 166 ~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELE 224 (354)
.+|..-|+.-+..+...++..++ ...-|.+=|...-.|+..|..|+||..||...|.
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~--~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQ--QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777766653 3333455566677889999999999999976554
No 198
>PRK02224 chromosome segregation protein; Provisional
Probab=32.92 E-value=7.3e+02 Score=27.62 Aligned_cols=45 Identities=31% Similarity=0.412 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAAS 250 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~ 250 (354)
+-.+.+.|+....+..+|++++..|..+.+.|...|..-++....
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~ 569 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334455677777888899999999999999999877665554333
No 199
>PRK10963 hypothetical protein; Provisional
Probab=32.85 E-value=1.6e+02 Score=27.71 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=8.6
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 018564 215 KATRRNAELEARAAQLSV 232 (354)
Q Consensus 215 ra~rrn~ELEERlrql~~ 232 (354)
...++|..+-+++.++..
T Consensus 65 ~~A~~Ne~l~~~~~~l~l 82 (223)
T PRK10963 65 EQAIANEDLFYRLLPLQS 82 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555544444
No 200
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=32.55 E-value=2.2e+02 Score=30.15 Aligned_cols=41 Identities=27% Similarity=0.673 Sum_probs=30.6
Q ss_pred ccccccccc----cccceEEeCCCCcccchhhHHh------CCCCCCCcccc
Q 018564 304 GPACKGCRK----RVASVVLLPCRHLCVCTECDRV------VQACPLCFNVR 345 (354)
Q Consensus 304 ~~~C~IC~~----~~~~vlLLPCrHlclC~~C~~~------l~~CPvCR~~i 345 (354)
...|-.|.+ ++.+.=-|||-|. +=..|... -+.||-||+.+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHH
Confidence 467888877 4556667899998 67788763 37999999543
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=32.47 E-value=28 Score=35.30 Aligned_cols=46 Identities=22% Similarity=0.609 Sum_probs=35.2
Q ss_pred cccccccccc----cccceEEeCCCCcccchhhHHhC----CCCCCCcccccceE
Q 018564 303 SGPACKGCRK----RVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSV 349 (354)
Q Consensus 303 ~~~~C~IC~~----~~~~vlLLPCrHlclC~~C~~~l----~~CPvCR~~i~~sV 349 (354)
....|.+|.+ .....+-.||++. +|..|...+ ..||.||.+....+
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred cCCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCc
Confidence 3478999988 3455666788998 899997764 49999998776543
No 202
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=32.42 E-value=3.1e+02 Score=23.26 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=7.9
Q ss_pred HHHHhHHHHHHHHHHHH
Q 018564 216 ATRRNAELEARAAQLSV 232 (354)
Q Consensus 216 a~rrn~ELEERlrql~~ 232 (354)
++++..++..+|+.|..
T Consensus 53 ~~~~~~~ik~~lk~l~~ 69 (151)
T cd00179 53 IKKLAKEIKGKLKELEE 69 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444455555443
No 203
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=32.03 E-value=5.8e+02 Score=27.33 Aligned_cols=63 Identities=30% Similarity=0.327 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH--HHHHHHHHHHH
Q 018564 170 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRR-NAELEAR--AAQLSVEAQVW 237 (354)
Q Consensus 170 ~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rr-n~ELEER--lrql~~E~QaW 237 (354)
++|+.++||||..|.-..+.+...+....++.+ -+|+ |.++.-|+ ..|||-| |-+.-.|...-
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~--~~re---en~rlQrkL~~e~erRealcr~lsEsess 321 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV--DHRE---ENERLQRKLINELERREALCRMLSESESS 321 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888888887777777765555442 2333 44444333 3455544 54544454443
No 204
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=32.02 E-value=2.4e+02 Score=21.85 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 167 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAE 199 (354)
Q Consensus 167 EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE 199 (354)
.+..-|+...+.....|+...=.+|+.||.+.+
T Consensus 26 ~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~ 58 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRKLVYENYRDFIEASD 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444555667777888888888899999998887
No 205
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=31.95 E-value=2.4e+02 Score=23.30 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 018564 161 IKRQRDELDQFLQAQGEQLR 180 (354)
Q Consensus 161 l~qQ~~EID~~i~~q~ErLR 180 (354)
+..--+|+|.+|....++..
T Consensus 32 v~~kLneLd~Li~eA~~r~~ 51 (109)
T PF03980_consen 32 VVEKLNELDKLIEEAKERKN 51 (109)
T ss_pred HHHHHHHHHHHHHHHHHhHh
Confidence 34444577887777665544
No 206
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=31.76 E-value=10 Score=31.74 Aligned_cols=38 Identities=18% Similarity=0.664 Sum_probs=29.9
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHhCCCCCCCcccc
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVR 345 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l~~CPvCR~~i 345 (354)
....|..|..+..-..+ |. +|..|+..+..|+-|..+.
T Consensus 54 ~p~kC~~C~qktVk~AY----h~-iC~~Ca~~~~vCaKC~k~~ 91 (92)
T PF10217_consen 54 QPKKCNKCQQKTVKHAY----HV-ICDPCAKELKVCAKCGKPP 91 (92)
T ss_pred CCccccccccchHHHHH----HH-HHHHHHHhhccCcccCCCC
Confidence 34689999887766443 44 8999999999999998753
No 207
>PLN03184 chloroplast Hsp70; Provisional
Probab=31.58 E-value=7.3e+02 Score=27.28 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHH
Q 018564 177 EQLRRALAEKRQRHYRALLGAAEESIARLLR--EKEAEVEKATRRNAELEARA 227 (354)
Q Consensus 177 ErLR~~L~E~rqrh~r~ll~avE~~~~~rLR--eKEeEIera~rrn~ELEERl 227 (354)
++.++...|.|. ...+++..++..... +. -.++|.+++.....++++.|
T Consensus 558 D~~~~~~~eakN-~lE~~iy~~r~~l~e-~~~~~~~eer~~l~~~l~~~e~wL 608 (673)
T PLN03184 558 DKEKRDAVDTKN-QADSVVYQTEKQLKE-LGDKVPADVKEKVEAKLKELKDAI 608 (673)
T ss_pred hHHHHHHHHHHH-hHHHHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHH
Confidence 344444444432 345555555544321 11 13445555555555555555
No 208
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.15 E-value=7.3e+02 Score=27.13 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 233 EAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 233 E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
+-+.++......+..+..|+..|--
T Consensus 291 qLr~~qe~lqaSqq~~~~L~~EL~~ 315 (546)
T PF07888_consen 291 QLRSAQEQLQASQQEAELLRKELSD 315 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544433
No 209
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=31.07 E-value=2.6e+02 Score=27.86 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=21.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018564 217 TRRNAELEARAAQLSVEAQVWQAKARAQEA 246 (354)
Q Consensus 217 ~rrn~ELEERlrql~~E~QaWq~~A~~nEA 246 (354)
++....+||||+.|..|-+..-..|+..|-
T Consensus 258 raeL~acEEkl~kmeE~Qa~~l~~aR~~er 287 (311)
T PF04642_consen 258 RAELNACEEKLKKMEEEQAEMLRAARTEER 287 (311)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 334456778888888777777777776665
No 210
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.04 E-value=3.1e+02 Score=25.10 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHH
Q 018564 161 IKRQRDELDQFLQ 173 (354)
Q Consensus 161 l~qQ~~EID~~i~ 173 (354)
+-+.+.|+..+-+
T Consensus 76 ~~~l~~ELael~r 88 (194)
T PF08614_consen 76 LAKLQEELAELYR 88 (194)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 3333444443333
No 211
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=30.93 E-value=5.3e+02 Score=25.44 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 221 AELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 258 (354)
Q Consensus 221 ~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~ 258 (354)
-++.||+++|..|+--.-..-+--+-.+..|+..++.+
T Consensus 166 ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 166 EEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 34557888888888777777777777788888888775
No 212
>PRK14143 heat shock protein GrpE; Provisional
Probab=30.61 E-value=2.9e+02 Score=26.79 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 165 RDELDQFLQAQGEQLRRALAEKRQRH 190 (354)
Q Consensus 165 ~~EID~~i~~q~ErLR~~L~E~rqrh 190 (354)
..++.. +....+.|+..+++.+.+.
T Consensus 66 ~~~~~~-l~~el~~l~~e~~elkd~~ 90 (238)
T PRK14143 66 AARLAQ-LEQELESLKQELEELNSQY 90 (238)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345654 4556677777777765443
No 213
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.56 E-value=4.2e+02 Score=24.19 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 018564 220 NAELEARAAQLSVEAQ 235 (354)
Q Consensus 220 n~ELEERlrql~~E~Q 235 (354)
+..||++++.|..|+.
T Consensus 160 ~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 160 LNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555553
No 214
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.53 E-value=7.8e+02 Score=27.23 Aligned_cols=92 Identities=25% Similarity=0.378 Sum_probs=57.3
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH--------
Q 018564 166 DELDQF------LQAQGEQLRRALAEKR------QRHYRALLGAAEESIAR------LLREKEAEVEKATRR-------- 219 (354)
Q Consensus 166 ~EID~~------i~~q~ErLR~~L~E~r------qrh~r~ll~avE~~~~~------rLReKEeEIera~rr-------- 219 (354)
.|||.| |+.++..|+.++.|+- +-|+.+|-++++..-.+ -|-.|.+|+-++.+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367766 4466777887777764 45667777666643221 145566666666432
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 220 -----NAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 220 -----n~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
+.+.-|++++|.-|..-+.+.-.--.|.+.-|-.=|-+
T Consensus 411 ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilke 453 (654)
T KOG4809|consen 411 DDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKE 453 (654)
T ss_pred HhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777889999998888887765555555444333333
No 215
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=30.52 E-value=3e+02 Score=23.35 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018564 203 ARLLREKEAEVEKATRR 219 (354)
Q Consensus 203 ~~rLReKEeEIera~rr 219 (354)
..||-+|..|++...+.
T Consensus 3 ~~ri~eKk~ELe~L~~l 19 (103)
T PF08654_consen 3 QARIAEKKAELEALKQL 19 (103)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34666777777666443
No 216
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.37 E-value=6.4e+02 Score=26.20 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018564 195 LGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 239 (354)
Q Consensus 195 l~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~ 239 (354)
+..++......+.+.++|++.+.+....|+..+..+..+-..+..
T Consensus 204 i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 204 IEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444556667777777777777777777777776666643
No 217
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=30.34 E-value=7.1e+02 Score=26.70 Aligned_cols=62 Identities=24% Similarity=0.286 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 018564 201 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSG 262 (354)
Q Consensus 201 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~~ 262 (354)
.++..|++|-.-++++.++...|++|...+..|-+.-+-.-..--+....|+..++.-+...
T Consensus 436 rl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~ 497 (507)
T PF05600_consen 436 RLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKR 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888889999888899988888888776655544444445566777777766543
No 218
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=30.21 E-value=1.9e+02 Score=25.75 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=40.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHH
Q 018564 154 SDDLASPIKRQRDELDQFLQAQ------GEQLRRALAEKRQRHYRALLGAAEESIA---RLLREKEAEVEKATRRNAELE 224 (354)
Q Consensus 154 ~d~l~~~l~qQ~~EID~~i~~q------~ErLR~~L~E~rqrh~r~ll~avE~~~~---~rLReKEeEIera~rrn~ELE 224 (354)
+..+.++|++-.+==+.|.+.+ ...|-..++|+| +++.+-|..+- .-|+.||.||...+++..++.
T Consensus 47 D~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~q-----sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 47 DEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQ-----SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678877765556666544 334555555553 45555443332 458889999988877655554
Q ss_pred HH
Q 018564 225 AR 226 (354)
Q Consensus 225 ER 226 (354)
-.
T Consensus 122 ~~ 123 (131)
T PF04859_consen 122 RA 123 (131)
T ss_pred HH
Confidence 33
No 219
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=30.04 E-value=2.9e+02 Score=30.12 Aligned_cols=97 Identities=20% Similarity=0.344 Sum_probs=52.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----
Q 018564 158 ASPIKRQRDELDQFLQAQGEQLRRALAEKRQRH--YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQL----- 230 (354)
Q Consensus 158 ~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh--~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql----- 230 (354)
...++.+..+||-++|+-.+ ||+.|.|+.+-- +..-+...= .+.+||=--...+|++..|-....+|+|-=
T Consensus 239 ~~DlEkkegriddllRancD-lRRQIdEqqk~LEkyKerlnkcv-~msKkLLIeKs~qEk~a~RdKsmqDrlRlGhFtTv 316 (775)
T KOG1151|consen 239 NSDLEKKEGRIDDLLRANCD-LRRQIDEQQKMLEKYKERLNKCV-TMSKKLLIEKSKQEKMACRDKSMQDRLRLGHFTTV 316 (775)
T ss_pred cchhhhhcchHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHhhhhhhhhhcccccceeee
Confidence 34577888899999998644 566666654210 000010000 234555444556777777776666665421
Q ss_pred ---------HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 231 ---------SVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 231 ---------~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
-+..-+++.+.+-.|- +|+-|..++.
T Consensus 317 RhGaSFteQWtDG~AFqnl~KqqE~-iN~qReeIer 351 (775)
T KOG1151|consen 317 RHGASFTEQWTDGYAFQNLIKQQER-INSQREEIER 351 (775)
T ss_pred ecCccHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1234445555555443 5666666655
No 220
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.01 E-value=20 Score=39.63 Aligned_cols=37 Identities=27% Similarity=0.644 Sum_probs=26.6
Q ss_pred ccccccccc----ccceEEeCCCCcccchhhHHhC--CCCCCCcc
Q 018564 305 PACKGCRKR----VASVVLLPCRHLCVCTECDRVV--QACPLCFN 343 (354)
Q Consensus 305 ~~C~IC~~~----~~~vlLLPCrHlclC~~C~~~l--~~CPvCR~ 343 (354)
..|.||... ...-+++-|+|. +|+-|...+ ..|| |.-
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhccCC-CCc
Confidence 467788443 334566789998 899999886 5898 543
No 221
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.87 E-value=3.6e+02 Score=23.20 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=4.6
Q ss_pred HHHhHHHHHHH
Q 018564 217 TRRNAELEARA 227 (354)
Q Consensus 217 ~rrn~ELEERl 227 (354)
+.++.+||.||
T Consensus 72 R~kl~~Leari 82 (103)
T COG2960 72 REKLAALEARI 82 (103)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 222
>PRK14127 cell division protein GpsB; Provisional
Probab=29.86 E-value=2.2e+02 Score=24.50 Aligned_cols=10 Identities=50% Similarity=0.880 Sum_probs=7.1
Q ss_pred HHHHHHHHHH
Q 018564 166 DELDQFLQAQ 175 (354)
Q Consensus 166 ~EID~~i~~q 175 (354)
.|+|.||..=
T Consensus 26 ~EVD~FLd~V 35 (109)
T PRK14127 26 DEVDKFLDDV 35 (109)
T ss_pred HHHHHHHHHH
Confidence 5888887643
No 223
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.75 E-value=22 Score=31.82 Aligned_cols=25 Identities=24% Similarity=0.752 Sum_probs=18.0
Q ss_pred cchhhHHh-CCCCCCCcccccceEEE
Q 018564 327 VCTECDRV-VQACPLCFNVRDSSVEV 351 (354)
Q Consensus 327 lC~~C~~~-l~~CPvCR~~i~~sV~V 351 (354)
+|..|... +..||+|..+|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 46666544 56899999999886543
No 224
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=29.50 E-value=1.1e+02 Score=34.08 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHH
Q 018564 166 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATR-------RNAELEARAA 228 (354)
Q Consensus 166 ~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~r-------rn~ELEERlr 228 (354)
+|+-.=+..+++.+.++|++++++|.+.|-+-- -...|+++|.+|..+.. .-|-||-||.
T Consensus 363 eeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k---~~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~ 429 (669)
T PF08549_consen 363 EEFRKRVAKKIADMNAEIEKMKARHAKRMAKFK---RNSLLKDAEKELRDAVEDPSETGPEIWRLEGRLD 429 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHhccCCccccCccceeeccccc
Confidence 344455667788888999999999988874332 24557778888876654 3577887776
No 225
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=29.44 E-value=28 Score=28.55 Aligned_cols=44 Identities=30% Similarity=0.702 Sum_probs=16.4
Q ss_pred ccccccccccccc----ceEEeCCCC--cccchhhHHh-----CCCCCCCccccc
Q 018564 303 SGPACKGCRKRVA----SVVLLPCRH--LCVCTECDRV-----VQACPLCFNVRD 346 (354)
Q Consensus 303 ~~~~C~IC~~~~~----~vlLLPCrH--lclC~~C~~~-----l~~CPvCR~~i~ 346 (354)
+...|.||.+... .-+|+-|.. +.+|+.|..- .+.||-|+++.+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 3567888877421 124444533 2268888654 479999998764
No 226
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=29.43 E-value=7.4e+02 Score=26.65 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=3.6
Q ss_pred hhhhhHHHH
Q 018564 160 PIKRQRDEL 168 (354)
Q Consensus 160 ~l~qQ~~EI 168 (354)
+|+.|+...
T Consensus 348 qlen~k~~~ 356 (493)
T KOG0804|consen 348 QLENQKQYY 356 (493)
T ss_pred HHHhHHHHH
Confidence 344444333
No 227
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=29.00 E-value=2.6e+02 Score=22.00 Aligned_cols=48 Identities=23% Similarity=0.404 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 179 LRRALAEKRQRH--YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 179 LR~~L~E~rqrh--~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
+|..+...|+-| +-+-+.|++.---.-| .|.|+.||.-.|.+++.+++
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L-----~iqRmKkKKLAlKDki~~lE 58 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDAL-----RIQRMKKKKLALKDKITKLE 58 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHH-----HHHHHHHHHHhHHHHHHHHH
Confidence 455555555555 3455556555333334 47788888888888887664
No 228
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=28.89 E-value=6e+02 Score=25.37 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=65.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Q 018564 157 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ- 235 (354)
Q Consensus 157 l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~Q- 235 (354)
|-.+|+++. .-|+..+.++...-+++|.-..-.|=.++. .|..+|-+....-.+....|.+|-++++.+..-..
T Consensus 79 LCRELQk~N----k~lkeE~~~~~~eee~kR~el~~kFq~~L~-dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~ 153 (309)
T PF09728_consen 79 LCRELQKQN----KKLKEESKRRAREEEEKRKELSEKFQATLK-DIQAQMEEQSERNIKLREENEELREKLKSLIEQYEL 153 (309)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554 344555555555555666554444444444 44566777777777888889999999998887665
Q ss_pred ---HHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 236 ---VWQAKARAQEATAASLQAQLQQAIM 260 (354)
Q Consensus 236 ---aWq~~A~~nEA~a~~Lra~LqQ~l~ 260 (354)
.|..+-+..+-.+.-+.+.|+++..
T Consensus 154 rE~~~~~~~k~keLE~Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 154 REEHFEKLLKQKELEVQLAEAKLEQQQE 181 (309)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777544
No 229
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.58 E-value=1.1e+02 Score=28.55 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 164 QRDELDQFLQAQGEQLRRALAEKRQRH 190 (354)
Q Consensus 164 Q~~EID~~i~~q~ErLR~~L~E~rqrh 190 (354)
-..|++.+ ....+.+...+.|.+.+.
T Consensus 30 ~~~e~~~l-~~~l~~le~e~~elkd~~ 55 (185)
T PRK14139 30 AEDAAPAL-EAELAEAEAKAAELQDSF 55 (185)
T ss_pred cchhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34455543 344555665555554433
No 230
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=28.54 E-value=3e+02 Score=24.20 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=9.8
Q ss_pred hhhhhhhhhHHHHHHHHH
Q 018564 156 DLASPIKRQRDELDQFLQ 173 (354)
Q Consensus 156 ~l~~~l~qQ~~EID~~i~ 173 (354)
.|+.-|=.--..||.||.
T Consensus 73 elA~dIi~kakqIe~LId 90 (144)
T PF11221_consen 73 ELATDIIRKAKQIEYLID 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444556776665
No 231
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=28.34 E-value=3.8e+02 Score=24.28 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018564 167 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 227 (354)
Q Consensus 167 EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERl 227 (354)
.|+.+..+- -.|-..|-+.|-.|.|+.|.. .+-..|++|.++|+.+++...+.++.|
T Consensus 105 ki~~i~~L~-~NmhhllNeyRPhQARetLi~---~me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 105 KIEDIRLLF-INMHHLLNEYRPHQARETLIM---MMEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp HHHHHHHHH-HHHHHHHHHTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHhCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555443332 346677888899898877633 234668889999999999888877765
No 232
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.23 E-value=8e+02 Score=26.65 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=8.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 018564 236 VWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 236 aWq~~A~~nEA~a~~Lra~LqQ 257 (354)
.|...-..-++-...++..+.+
T Consensus 259 ~~~~~r~~Le~ei~~le~e~~e 280 (650)
T TIGR03185 259 DLFEEREQLERQLKEIEAARKA 280 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333333333444444333
No 233
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=28.20 E-value=1.9e+02 Score=25.13 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018564 197 AAEESIARLLREKEAEVE 214 (354)
Q Consensus 197 avE~~~~~rLReKEeEIe 214 (354)
-+|....++|++.-.+++
T Consensus 61 e~e~K~~r~i~~ml~~~~ 78 (108)
T COG3937 61 ELEEKIPRKIEEMLSDLE 78 (108)
T ss_pred hHHHhhhHHHHHHHhhcc
Confidence 344444455554444433
No 234
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.18 E-value=8.2e+02 Score=26.76 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 189 RHYRALLGAAEES---IARLLREKEAEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 189 rh~r~ll~avE~~---~~~rLReKEeEIera~rrn~ELEERlrql~~E~ 234 (354)
+++...++.+|.. +-++.+..|+|+.++++.|.-|.+-|..+..+-
T Consensus 144 ~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 144 DDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3456666666653 356677888999999988888887777776543
No 235
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=28.15 E-value=74 Score=25.76 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 201 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 201 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
..+|+|.-.|.+|+.+...+-.|.|+.-++ -..|...-...+|+++.|-..|..
T Consensus 16 ~~~R~LGlse~~Id~ie~~~~~~~Eq~yqm---L~~W~~~~g~~~At~~~L~~aLr~ 69 (80)
T cd08313 16 EFVRRLGLSDNEIERVELDHRRCRDAQYQM---LKVWKERGPRPYATLQHLLSVLRD 69 (80)
T ss_pred HHHHHcCCCHHHHHHHHHhCCChHHHHHHH---HHHHHHhcCCCcchHHHHHHHHHH
Confidence 467888899999999999888888776665 578988755557777777665554
No 236
>PF14282 FlxA: FlxA-like protein
Probab=27.98 E-value=3.3e+02 Score=22.87 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH-HH---HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018564 210 EAEVEKATRRNAELEARAAQLSV-EA---QVWQAKARAQEATAASLQAQLQQAIMS 261 (354)
Q Consensus 210 EeEIera~rrn~ELEERlrql~~-E~---QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 261 (354)
+..|+++.++...|.+.|+.|.. +. ..-+.....-.+-+..|.++|.++..+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888887777 22 334555566666777788888776654
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.43 E-value=2.5e+02 Score=31.11 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHH-HHHhHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQ--VWQAK-ARAQEATAASLQAQLQQA 258 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~Q--aWq~~-A~~nEA~a~~Lra~LqQ~ 258 (354)
.++.+.+|+.+.+.+.+|+.++.++..|.. .|.++ .+..+..++.|+.+|+..
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777788888777776554 34432 334566788999888874
No 238
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=27.22 E-value=4.3e+02 Score=27.51 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 177 EQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQL 230 (354)
Q Consensus 177 ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql 230 (354)
++.-+.....+=+--..-+...|.....++++++.+|++..++..++|.++.++
T Consensus 315 ~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~ 368 (373)
T COG5019 315 ERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368 (373)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333444445667777778888888888888877777777776554
No 239
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=27.05 E-value=2.4e+02 Score=25.37 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.3
Q ss_pred HHHHHH
Q 018564 166 DELDQF 171 (354)
Q Consensus 166 ~EID~~ 171 (354)
.|++.|
T Consensus 18 ~EL~~L 23 (158)
T PRK05892 18 AELARL 23 (158)
T ss_pred HHHHHH
Confidence 333333
No 240
>PHA03248 DNA packaging tegument protein UL25; Provisional
Probab=26.79 E-value=2.2e+02 Score=31.20 Aligned_cols=49 Identities=35% Similarity=0.365 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018564 179 LRRALAEKRQRHYRALLGAAEE-------SIARLLREKEAEVEKATRRNAELEARA 227 (354)
Q Consensus 179 LR~~L~E~rqrh~r~ll~avE~-------~~~~rLReKEeEIera~rrn~ELEERl 227 (354)
.|.++.+.|++-..+-|.-++. .+-+|||-.|+.++++..-..+||+..
T Consensus 53 ~~~~~~~~r~~Aa~AAld~l~~~~~~~~~~v~~rl~p~e~~~~~v~~~l~~le~aa 108 (583)
T PHA03248 53 ARLALLEARNRAAAAALDNLAGQAATIPVEVDRRLRPIERQLEEVADALADLEEAA 108 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4445555565555544433332 456777777777777777777777654
No 241
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.75 E-value=5.6e+02 Score=24.35 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 176 GEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 255 (354)
Q Consensus 176 ~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 255 (354)
+.+|-..+.+.|+ +++++--+ ..+-+..++|++.++--..+|||.-++|.+.+..--.-.+.-.+.+..|+...
T Consensus 38 na~L~~e~~~L~~-q~~s~Qqa-----l~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 38 NAQLAEEITDLRK-QLKSLQQA-----LQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 34444333 33445567889888888888888888877766554444444444455554444
Q ss_pred HHH
Q 018564 256 QQA 258 (354)
Q Consensus 256 qQ~ 258 (354)
..+
T Consensus 112 ~kl 114 (193)
T PF14662_consen 112 GKL 114 (193)
T ss_pred hHH
Confidence 443
No 242
>PRK04863 mukB cell division protein MukB; Provisional
Probab=26.65 E-value=1.3e+03 Score=28.43 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=21.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 211 AEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 256 (354)
Q Consensus 211 eEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~Lq 256 (354)
.+++.+..+..+.++.+..+..+...+.......|..+..|+.++.
T Consensus 355 ~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444555444445555555554444
No 243
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.53 E-value=6.1e+02 Score=24.73 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018564 203 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 203 ~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq 238 (354)
.+.+++.+-|+..+.++...|+.-|..|..+-..-.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666555555555555554444333
No 244
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=26.26 E-value=57 Score=27.02 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=20.3
Q ss_pred eEEeCCCCcccchhhHHh-------CCCCCCCccccc
Q 018564 317 VVLLPCRHLCVCTECDRV-------VQACPLCFNVRD 346 (354)
Q Consensus 317 vlLLPCrHlclC~~C~~~-------l~~CPvCR~~i~ 346 (354)
+++--|+|. +=.-|... -..||+||.+..
T Consensus 47 lv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 456679887 66677433 259999998753
No 245
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=26.23 E-value=1e+03 Score=27.16 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 173 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 252 (354)
Q Consensus 173 ~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 252 (354)
+.|.+.|+-.|..+. .|+-.|.+-|| +.--+|.+|+..|++....+.++++-+..+..|...-.+...-.+..++.|+
T Consensus 321 r~hi~~lkesl~~ke-~~~~~Lqsdve-~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 321 RQHIEVLKESLRAKE-QEAEMLQSDVE-ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766543 35556666666 5677899999999999999999999999999999999998888899999999
Q ss_pred HHHHHH
Q 018564 253 AQLQQA 258 (354)
Q Consensus 253 a~LqQ~ 258 (354)
..++.+
T Consensus 399 ~kie~L 404 (775)
T PF10174_consen 399 KKIENL 404 (775)
T ss_pred HHHHHH
Confidence 885443
No 246
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.13 E-value=50 Score=33.20 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=25.1
Q ss_pred ccccccccccccceEEeC-----CCCcccchhhHHh--C--CCCCCCccc
Q 018564 304 GPACKGCRKRVASVVLLP-----CRHLCVCTECDRV--V--QACPLCFNV 344 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLP-----CrHlclC~~C~~~--l--~~CPvCR~~ 344 (354)
...|.||...+..-++.. =||+ .|.-|... + -.||.|...
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYL-HCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEE-EcCCCCCcccccCccCCCCCCC
Confidence 568999988875433321 1222 68888654 2 389998864
No 247
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.95 E-value=6.8e+02 Score=25.94 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 210 EAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 210 EeEIera~rrn~ELEERlrql~~E 233 (354)
++||..-.++..+.+|+|+|-..+
T Consensus 241 ~EeL~~G~~kL~~~~etLEqq~~~ 264 (365)
T KOG2391|consen 241 EEELNIGKQKLVAMKETLEQQLQS 264 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 248
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=25.76 E-value=45 Score=39.41 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=33.4
Q ss_pred ccccccccccccceEEeC-CCCcc----cchhhHHhC--C-----CCCCCcccccceEEE
Q 018564 304 GPACKGCRKRVASVVLLP-CRHLC----VCTECDRVV--Q-----ACPLCFNVRDSSVEV 351 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLP-CrHlc----lC~~C~~~l--~-----~CPvCR~~i~~sV~V 351 (354)
...|.-|...... .+-| ||..- .|..|...+ . .||.|..+.......
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~ 725 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR 725 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE
Confidence 5789999886544 3666 88652 589997764 2 899999887776543
No 249
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.70 E-value=8e+02 Score=25.80 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=17.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 216 ATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 216 a~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
+.....-+.++++.+..+.......-+..+..+..|+..|..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444444443333333334444445555444
No 250
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=25.65 E-value=25 Score=27.44 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=7.8
Q ss_pred CCCCCcccccce
Q 018564 337 ACPLCFNVRDSS 348 (354)
Q Consensus 337 ~CPvCR~~i~~s 348 (354)
.||.|+.+|.-+
T Consensus 57 ~CP~C~~~i~~~ 68 (70)
T PF11793_consen 57 ECPYCSSPISWS 68 (70)
T ss_dssp E-TTT-SEEEGG
T ss_pred CCcCCCCeeeEe
Confidence 799999988643
No 251
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=25.63 E-value=27 Score=25.96 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=6.7
Q ss_pred CCCCCcccccceE
Q 018564 337 ACPLCFNVRDSSV 349 (354)
Q Consensus 337 ~CPvCR~~i~~sV 349 (354)
+||+|..++..+.
T Consensus 36 ~CP~C~a~K~~F~ 48 (50)
T cd00730 36 VCPVCGAGKDDFE 48 (50)
T ss_pred CCCCCCCcHHHcE
Confidence 5555555554443
No 252
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.55 E-value=4.9e+02 Score=23.24 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=6.4
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 018564 213 VEKATRRNAELEARAAQL 230 (354)
Q Consensus 213 Iera~rrn~ELEERlrql 230 (354)
++......+++.+.++.+
T Consensus 132 l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 132 LDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 253
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.52 E-value=5.6e+02 Score=23.90 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=20.0
Q ss_pred ccccccccccCCCcccccchhhhhccCCCCccccccccccch
Q 018564 71 PMNHYSISMQSQQTPQLINLSQLHNHHQPNVVSTGLRLSFGD 112 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vSTGLrLs~~~ 112 (354)
.|.-|..-||.|-.+|+++....-+- +...||=++|-+
T Consensus 17 ~mevfk~vPQ~PHF~pL~~~~e~~RE----g~A~Glm~~f~~ 54 (190)
T PF05266_consen 17 SMEVFKKVPQSPHFSPLQEFKEELRE----GMAVGLMVTFAN 54 (190)
T ss_pred HHHHHHcCCCCCCChhhhcCcHHhhh----HHHHHHHHHHHH
Confidence 45533444433333566666555543 356677667664
No 254
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=25.51 E-value=2.7e+02 Score=23.97 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=26.2
Q ss_pred HHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 204 RLLREKE--AEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 204 ~rLReKE--eEIera~rrn~ELEERlrql~~E~ 234 (354)
++||+-. +.+++--++..|++|.||++.+..
T Consensus 70 ~~L~~~~~~e~LE~~M~kaqe~~e~Lrs~v~p~ 102 (106)
T PF03528_consen 70 RRLREGQELENLEKSMKKAQEDEEKLRSVVMPM 102 (106)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 5677766 889999999999999999987754
No 255
>PRK14157 heat shock protein GrpE; Provisional
Probab=25.48 E-value=1.6e+02 Score=28.56 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018564 208 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 242 (354)
Q Consensus 208 eKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~ 242 (354)
..+.+|+.+.++..+|.+++.++.+|....+.++.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~ 115 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQ 115 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 256
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=25.38 E-value=2.1e+02 Score=24.24 Aligned_cols=57 Identities=30% Similarity=0.437 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HH----HHHHHHHhHHHHHHHH
Q 018564 166 DELDQFLQAQGEQLRRALAEKRQRHY--RALLGAAEESIARLLREKE--AE----VEKATRRNAELEARAA 228 (354)
Q Consensus 166 ~EID~~i~~q~ErLR~~L~E~rqrh~--r~ll~avE~~~~~rLReKE--eE----Iera~rrn~ELEERlr 228 (354)
.-||+||.++ .+|+-+|-.+. .+++.-+| ++.--|+.|- +. +++++++-.||++.+|
T Consensus 21 ~~IDsFv~Ln-----~glEskrGe~Fi~vsIlGFlE-GiLttLk~K~~deri~~Lle~Vr~~R~ele~~fR 85 (97)
T PF11505_consen 21 EAIDSFVALN-----EGLESKRGEEFIKVSILGFLE-GILTTLKLKYEDERIGELLEKVRARREELEELFR 85 (97)
T ss_dssp HHHHHHHHHT-----TTHHHHH-HHHHHHHHHHHHH-HHHHHHTTT---HHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHh-----hhhhhhchHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999866 56777777764 35566666 5555666554 11 2334444455555444
No 257
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=25.33 E-value=14 Score=36.64 Aligned_cols=38 Identities=24% Similarity=0.641 Sum_probs=27.2
Q ss_pred cccccccc----cccceEEeCCCCcccchhhHHhC----CCCCCCcc
Q 018564 305 PACKGCRK----RVASVVLLPCRHLCVCTECDRVV----QACPLCFN 343 (354)
Q Consensus 305 ~~C~IC~~----~~~~vlLLPCrHlclC~~C~~~l----~~CPvCR~ 343 (354)
.-|.+|.+ ....+..+||+|.-- ..|...+ -+||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc
Confidence 34888876 355677889999853 4554442 59999988
No 258
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.25 E-value=2.7e+02 Score=26.92 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~ 232 (354)
.+++.+.||.+||+++..|..
T Consensus 46 ql~r~R~~~~~Le~~l~~L~~ 66 (218)
T COG3159 46 QLARLRNRIRELEEELAALME 66 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666665553
No 259
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=25.18 E-value=3.7e+02 Score=26.27 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 221 AELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 221 ~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
.|...|+..|..|+++.+..-.........|+.-+-+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666666666655544444444445444433
No 260
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.17 E-value=2.8e+02 Score=20.89 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQL 230 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql 230 (354)
..+.+.+.+|+....+|.+|++.++.|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567778888888888888888888
No 261
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=24.84 E-value=5.6e+02 Score=23.68 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 192 RALLGAAEESIARLLREKEAEVEKATR 218 (354)
Q Consensus 192 r~ll~avE~~~~~rLReKEeEIera~r 218 (354)
+.+|..+...+.+.|++.++|.+++..
T Consensus 33 ~~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 33 REILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 262
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=24.84 E-value=3.2e+02 Score=20.96 Aligned_cols=46 Identities=22% Similarity=0.542 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 166 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRR 219 (354)
Q Consensus 166 ~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rr 219 (354)
.-||.||.+ ||.-|.++.. +++..+-..-.+.|..+-.+||.+.|+
T Consensus 7 ~~~d~yI~~----Lk~kLd~Kk~----Eil~~ln~EY~kiLk~r~~~lEevKrk 52 (56)
T PF08112_consen 7 STIDKYISI----LKSKLDEKKS----EILSNLNMEYEKILKQRRKELEEVKRK 52 (56)
T ss_pred hhHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888765 6777777653 555555555556666666666666554
No 263
>PRK14127 cell division protein GpsB; Provisional
Probab=24.83 E-value=1.8e+02 Score=25.12 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=19.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
+++...+.+.+|++++++|..+...|+...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666677777777766666666543
No 264
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=24.78 E-value=7.3e+02 Score=24.99 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~E~QaWq 238 (354)
+..|+.+...+-..+|+.+.-|--+|.
T Consensus 178 ~F~rlK~ele~tk~Klee~QnelsAwk 204 (330)
T KOG2991|consen 178 FFLRLKGELEQTKDKLEEAQNELSAWK 204 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 333333333333345555555666664
No 265
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=24.77 E-value=43 Score=34.28 Aligned_cols=29 Identities=28% Similarity=0.793 Sum_probs=25.9
Q ss_pred ccccccccccccceEEeCCC--CcccchhhHH
Q 018564 304 GPACKGCRKRVASVVLLPCR--HLCVCTECDR 333 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCr--HlclC~~C~~ 333 (354)
...|..|-+....|+.+||. |. .|-.|..
T Consensus 221 ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr 251 (446)
T KOG0006|consen 221 NITCITCTDVRSPVLVFQCNSRHV-TCLDCFR 251 (446)
T ss_pred cceeEEecCCccceEEEecCCcee-ehHHhhh
Confidence 45899999999999999999 87 8999976
No 266
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=24.59 E-value=8e+02 Score=25.41 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018564 202 IARLLREKEAEVEKATRRN 220 (354)
Q Consensus 202 ~~~rLReKEeEIera~rrn 220 (354)
+..|||..+.+..++-+|.
T Consensus 160 l~~~~R~~ek~n~~AIkKS 178 (426)
T KOG2008|consen 160 LMGRMRQLEKKNKRAIKKS 178 (426)
T ss_pred HHHHHHHHHHHhHHHHhhc
Confidence 3457888888888777764
No 267
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=24.55 E-value=93 Score=30.75 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 218 RRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 218 rrn~ELEERlrql~~E~QaWq~~A 241 (354)
++..+|+|+|++|..|-++|..+.
T Consensus 164 ~~i~~Lee~I~rLk~E~~~W~~~l 187 (301)
T PF08202_consen 164 ENIAELEEKIKRLKEERQAWAQLL 187 (301)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456799999999999999999886
No 268
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.43 E-value=8.1e+02 Score=25.44 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 202 IARLLREKEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 202 ~~~rLReKEeEIera~rrn~ELEERlrql~~E 233 (354)
..++++..+.||+++..+..+++++++++..+
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~ 387 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDE 387 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Confidence 34556677788888888888888777776664
No 269
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=24.32 E-value=41 Score=28.74 Aligned_cols=44 Identities=20% Similarity=0.596 Sum_probs=27.9
Q ss_pred ccccccccccceEEeCCCC------cccchhhHHhC--------CCCCCCcccccceE
Q 018564 306 ACKGCRKRVASVVLLPCRH------LCVCTECDRVV--------QACPLCFNVRDSSV 349 (354)
Q Consensus 306 ~C~IC~~~~~~vlLLPCrH------lclC~~C~~~l--------~~CPvCR~~i~~sV 349 (354)
.|--|.+.-.+--|.|=++ ..+|..|-..+ ..||.|+++.+-.-
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~C 94 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPGC 94 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCccc
Confidence 4555555555555555543 34677776553 38999999987643
No 270
>PRK14155 heat shock protein GrpE; Provisional
Probab=24.16 E-value=2.3e+02 Score=26.90 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 018564 212 EVEKATRRN 220 (354)
Q Consensus 212 EIera~rrn 220 (354)
|.++.+||.
T Consensus 42 efeN~RKR~ 50 (208)
T PRK14155 42 EAENTKRRA 50 (208)
T ss_pred HHHHHHHHH
Confidence 444444443
No 271
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.01 E-value=7.2e+02 Score=24.66 Aligned_cols=32 Identities=6% Similarity=0.114 Sum_probs=21.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018564 154 SDDLASPIKRQRDELDQFLQAQGEQLRRALAE 185 (354)
Q Consensus 154 ~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E 185 (354)
+++....|+.|=.=|=.|-|++....|..|+-
T Consensus 113 ~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~ 144 (325)
T PF08317_consen 113 DPDMRLLMDNQFQLVKTYARLEAKKMWYEWRM 144 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777667777777777666666643
No 272
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=23.98 E-value=2.1e+02 Score=25.69 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=6.7
Q ss_pred HHHHHHHHhHHHHHHH
Q 018564 212 EVEKATRRNAELEARA 227 (354)
Q Consensus 212 EIera~rrn~ELEERl 227 (354)
|-..++++-+.|+.||
T Consensus 46 eY~aak~~~~~le~rI 61 (156)
T TIGR01461 46 DYQYGKKRLREIDRRV 61 (156)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3333444444444444
No 273
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.64 E-value=3.8e+02 Score=21.31 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 207 REKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 207 ReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
.....|++....+|.+|.+.-..|..|++.-+.-...-...+.+|=+.|++
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345568888888999999999999999988775544444455555555543
No 274
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.52 E-value=44 Score=33.75 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=13.7
Q ss_pred CCCCCCCcccccceEE
Q 018564 335 VQACPLCFNVRDSSVE 350 (354)
Q Consensus 335 l~~CPvCR~~i~~sV~ 350 (354)
+..|++||.+|++.|-
T Consensus 42 k~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 42 KKTCAVCRFPIDSTID 57 (324)
T ss_pred CCCCceecCCCCcchh
Confidence 4689999999998874
No 275
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=23.34 E-value=1.8e+02 Score=30.95 Aligned_cols=35 Identities=37% Similarity=0.434 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 223 LEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 223 LEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
||-|+.--.+||+.-+..-..-|.-=-+|-++|.+
T Consensus 277 LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 277 LESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred HhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 45555555556665554443333333333333333
No 276
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.30 E-value=6.2e+02 Score=23.68 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 232 VEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 232 ~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
.+...|+..-..-+.....-|..|-+
T Consensus 126 ~~~~~~~~~l~~l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 126 NELEERKQRLSQLQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333433333333333333333333
No 277
>PLN02436 cellulose synthase A
Probab=23.14 E-value=56 Score=38.02 Aligned_cols=44 Identities=30% Similarity=0.669 Sum_probs=31.5
Q ss_pred cccccccccccc----cceEEeCCCCc--ccchhhHHh-----CCCCCCCccccc
Q 018564 303 SGPACKGCRKRV----ASVVLLPCRHL--CVCTECDRV-----VQACPLCFNVRD 346 (354)
Q Consensus 303 ~~~~C~IC~~~~----~~vlLLPCrHl--clC~~C~~~-----l~~CPvCR~~i~ 346 (354)
+...|.||.+.. -.=+|+.|... .+|..|..- -+.||-|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 455899999863 22377788632 289999755 359999998765
No 278
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=22.95 E-value=3.9e+02 Score=21.18 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 173 QAQGEQLRRALAEKRQRHYRA-LLGAAEESIARLLREKEAEVEKATRRNAELEARAAQL 230 (354)
Q Consensus 173 ~~q~ErLR~~L~E~rqrh~r~-ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql 230 (354)
..+.+++...|.+-..-.... .+..+. -..||..-..++..+..+...|++|+..|
T Consensus 34 ~~~i~~~~~~L~~~~~~~~~~~~~~~~~--y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 34 LQQIDRLNEKLKELNEVEQINEPFDLDP--YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666666533322 333333 56777777778888888888888887765
No 279
>PRK14148 heat shock protein GrpE; Provisional
Probab=22.93 E-value=2.3e+02 Score=26.67 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 166 DELDQFLQAQGEQLRRALAEKRQR 189 (354)
Q Consensus 166 ~EID~~i~~q~ErLR~~L~E~rqr 189 (354)
.|++. +....+.|...+++.+.+
T Consensus 40 ~e~~~-l~~~l~~l~~e~~elkd~ 62 (195)
T PRK14148 40 EQLER-AKDTIKELEDSCDQFKDE 62 (195)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34444 334455555555554433
No 280
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=22.90 E-value=69 Score=29.54 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=26.1
Q ss_pred cccccccccccccceEEeCCCCcccc----hhhHHh------CCCCCCCccccc
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVC----TECDRV------VQACPLCFNVRD 346 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC----~~C~~~------l~~CPvCR~~i~ 346 (354)
.++.|.||++.... ..-||+-...- .+|-.. -..|++|..+..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 35799999988753 34566522111 234322 359999998764
No 281
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=22.80 E-value=3.9e+02 Score=28.29 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEAR 226 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEER 226 (354)
.||||.+.-+++...+|..|-|+
T Consensus 272 qrlrelnqrL~~EL~~~raLaeq 294 (497)
T COG3851 272 QRLRELNQRLQKELARNRALAEQ 294 (497)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444444444444444444443
No 282
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=22.76 E-value=5.3e+02 Score=22.68 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018564 201 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 261 (354)
Q Consensus 201 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 261 (354)
.|+..||..-.||......|...-.||..+..|--+||.+..--+ .|-.+.++++..
T Consensus 37 EI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l~----~lD~~V~~aY~K 93 (131)
T PF10198_consen 37 EISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRILD----DLDKQVEQAYKK 93 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 556677778888888888888888899999999999998865443 355555665543
No 283
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=22.73 E-value=77 Score=33.88 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEK 215 (354)
Q Consensus 204 ~rLReKEeEIer 215 (354)
..|.+||.||++
T Consensus 403 e~i~~kE~eLe~ 414 (492)
T PF06273_consen 403 EEISQKEKELEK 414 (492)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 284
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.72 E-value=8.4e+02 Score=26.82 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=48.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018564 160 PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 160 ~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq 238 (354)
.++++-.++.+=|....++.-....|.|. ..+.+...+ ..+..||-..|.+++.....-..|++++..|..--..|.
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~-~~~~~~~~~-~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRV-KTEQAQASV-HQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 34555556665555555555555566632 233333322 345677778888888888888999999988876556675
No 285
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.68 E-value=3.4e+02 Score=23.15 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=17.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 018564 151 SFLSDDLASPIKRQRDELDQFLQAQGE 177 (354)
Q Consensus 151 s~l~d~l~~~l~qQ~~EID~~i~~q~E 177 (354)
-++++.-.++.++.+.|.|.=+...+|
T Consensus 53 IlmsQNRq~~~dr~ra~~D~~inl~ae 79 (108)
T PF06210_consen 53 ILMSQNRQAARDRLRAELDYQINLKAE 79 (108)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHhH
Confidence 346676666677777777766655433
No 286
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.64 E-value=67 Score=31.85 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=28.8
Q ss_pred ccccccccc----cccceEEeCCCCcccchhhHHh--CCCCCCCcccccceEEEe
Q 018564 304 GPACKGCRK----RVASVVLLPCRHLCVCTECDRV--VQACPLCFNVRDSSVEVF 352 (354)
Q Consensus 304 ~~~C~IC~~----~~~~vlLLPCrHlclC~~C~~~--l~~CPvCR~~i~~sV~V~ 352 (354)
...|+|=.- .-+=++|++|||+-. ..=-.. ...|++|..+....-.|.
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~S-erAlKeikas~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFS-ERALKEIKASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred eeecccccceecceEEEEEEeccceecc-HHHHHHhhhccccccCCcccccCeEe
Confidence 456666433 334477889999832 111111 359999999877654443
No 287
>PRK14158 heat shock protein GrpE; Provisional
Probab=22.62 E-value=3.4e+02 Score=25.54 Aligned_cols=16 Identities=6% Similarity=-0.082 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 018564 173 QAQGEQLRRALAEKRQ 188 (354)
Q Consensus 173 ~~q~ErLR~~L~E~rq 188 (354)
....+.+...+.+.+.
T Consensus 46 e~~l~~le~e~~el~d 61 (194)
T PRK14158 46 EEALAAKEAEAAANWD 61 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555554443
No 288
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.52 E-value=1.4e+02 Score=24.39 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 213 VEKATRRNAELEARAAQLSVEAQV 236 (354)
Q Consensus 213 Iera~rrn~ELEERlrql~~E~Qa 236 (354)
|..+.+.|..|+++|..|.+|-|.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888887776654
No 289
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=22.15 E-value=4.2e+02 Score=21.29 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Q 018564 153 LSDDLASPIKRQRDELDQFLQAQ 175 (354)
Q Consensus 153 l~d~l~~~l~qQ~~EID~~i~~q 175 (354)
.++.|+.-|..-.+|++++=..+
T Consensus 11 p~~~Ls~vl~~LqDE~~hm~~e~ 33 (79)
T PF06657_consen 11 PGEALSEVLKALQDEFGHMKMEH 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888889998765444
No 290
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.98 E-value=2.6e+02 Score=21.73 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 240 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~ 240 (354)
.+|....+++++.++..++++...+|..|-..|...
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~ 60 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRH 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 466778888888888888888888888888777653
No 291
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.88 E-value=4.1e+02 Score=21.03 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 201 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 201 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
...++||.+..|.+.. ..+|..++..+..+...-+.++
T Consensus 33 ~~IKKLr~~~~e~e~~---~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQ---IKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888877777643 3344455555555555444443
No 292
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.76 E-value=6.4e+02 Score=23.24 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQ 229 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrq 229 (354)
.|=.--.|||.+..+...||.||++
T Consensus 119 qll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444666666666666666655
No 293
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=21.68 E-value=1.1e+03 Score=26.01 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 018564 221 AELEARAAQLSVEAQVWQAKARAQ 244 (354)
Q Consensus 221 ~ELEERlrql~~E~QaWq~~A~~n 244 (354)
.||.+++-++..+...|...-...
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555556665555555543333
No 294
>PLN03188 kinesin-12 family protein; Provisional
Probab=21.65 E-value=1.3e+03 Score=28.12 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 018564 203 ARLLREKEAEVEKATRRNAELEA 225 (354)
Q Consensus 203 ~~rLReKEeEIera~rrn~ELEE 225 (354)
+=||||.|+-+.-+.+|.++.|.
T Consensus 1203 lvrl~eaeea~~~a~~r~~~~eq 1225 (1320)
T PLN03188 1203 LVRLKEAEEALTVAQKRAMDAEQ 1225 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555445454444443
No 295
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.65 E-value=9.3e+02 Score=25.09 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHH
Q 018564 188 QRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ-------AKARAQEATAASLQAQLQQAIM 260 (354)
Q Consensus 188 qrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq-------~~A~~nEA~a~~Lra~LqQ~l~ 260 (354)
+.-+..|-..-+.-....++..+ =+.++..+..-||+-++++..|++-.+ ..+++.|..+..|.-.|..+++
T Consensus 98 q~e~~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 98 QQESEQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 33444444444544444455444 566666667777777777777775433 4455555566666666665543
No 296
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=21.58 E-value=1.3e+03 Score=26.90 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 261 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 261 (354)
+-|-.|+++.+++.+...||.+....+.+=.-+|-..+.++|.. +|+|.+..
T Consensus 209 ~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~~v~l~~~lqE~k------~Leqel~~ 260 (984)
T COG4717 209 KLLESRRAEHARLAELRSELRADRDHIRALRDAVELWPRLQEWK------QLEQELTR 260 (984)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHHHHhcc
Confidence 34667888898888888888888888888888888888889887 66776663
No 297
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.56 E-value=2e+02 Score=23.37 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018564 208 EKEAEVEKATRRNAELEARAAQLSVEAQVW 237 (354)
Q Consensus 208 eKEeEIera~rrn~ELEERlrql~~E~QaW 237 (354)
+.+++|+.+..+...++.++.-+..+-..|
T Consensus 74 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 74 ELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444443333
No 298
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.52 E-value=1.3e+03 Score=26.82 Aligned_cols=9 Identities=33% Similarity=0.342 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q 018564 226 RAAQLSVEA 234 (354)
Q Consensus 226 Rlrql~~E~ 234 (354)
|.|++..|-
T Consensus 407 kqRqlewEr 415 (1118)
T KOG1029|consen 407 KQRQLEWER 415 (1118)
T ss_pred HHHHHHHHH
Confidence 555665553
No 299
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.46 E-value=1.8e+02 Score=28.18 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018564 214 EKATRRNAELEARAAQLSVEAQVWQAKARAQEA 246 (354)
Q Consensus 214 era~rrn~ELEERlrql~~E~QaWq~~A~~nEA 246 (354)
+|-+.||.|||+.++++..+...-+.....-.+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 300
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.45 E-value=1.2e+03 Score=26.32 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 018564 177 EQLRRALAE 185 (354)
Q Consensus 177 ErLR~~L~E 185 (354)
++|-..|++
T Consensus 519 ~~li~~l~~ 527 (782)
T PRK00409 519 NELIASLEE 527 (782)
T ss_pred HHHHHHHHH
Confidence 333333333
No 301
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=21.41 E-value=7.3e+02 Score=24.67 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=15.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018564 214 EKATRRNAELEARAAQLSVEAQVWQAK 240 (354)
Q Consensus 214 era~rrn~ELEERlrql~~E~QaWq~~ 240 (354)
+.+.-...+|+|+-+.|..|++..+.+
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334456666666666666666654
No 302
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=21.35 E-value=53 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.665 Sum_probs=19.7
Q ss_pred ccccccccccceEEeCCCCcccchhhHHhC
Q 018564 306 ACKGCRKRVASVVLLPCRHLCVCTECDRVV 335 (354)
Q Consensus 306 ~C~IC~~~~~~vlLLPCrHlclC~~C~~~l 335 (354)
.|.+|......-+.+ .+++ +|..|...+
T Consensus 1 ~CiiC~~~~~~GI~I-~~~f-IC~~CE~~i 28 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKF-ICSDCEKEI 28 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeE-ehHHHHHHh
Confidence 488998877763333 4555 899998875
No 303
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=21.16 E-value=4.7e+02 Score=21.47 Aligned_cols=17 Identities=41% Similarity=0.517 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhHHHH
Q 018564 208 EKEAEVEKATRRNAELE 224 (354)
Q Consensus 208 eKEeEIera~rrn~ELE 224 (354)
+.+.+++.+......|+
T Consensus 99 ~~~~~~~~~~~~~~~l~ 115 (120)
T PF11740_consen 99 AAEAELAEAEAQAEELE 115 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 304
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.03 E-value=4.6e+02 Score=25.30 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E 233 (354)
..|++|+-+++++.++..+|.-....+..|
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 445555555555555555555544444443
No 305
>PHA02107 hypothetical protein
Probab=20.92 E-value=2.3e+02 Score=26.60 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 200 ESIARLLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 200 ~~~~~rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
--.+.||.|-|+||.+..-+..|.|+-++.+.
T Consensus 180 ~F~S~Ri~EID~EI~~LQA~RKEiEDN~K~IK 211 (216)
T PHA02107 180 HFASVRISEIDEEIKELQARRKEIEDNIKSIK 211 (216)
T ss_pred hhhhhhHhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999888899998887653
No 306
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.70 E-value=7.3e+02 Score=28.89 Aligned_cols=43 Identities=28% Similarity=0.269 Sum_probs=16.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 216 ATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 258 (354)
Q Consensus 216 a~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~ 258 (354)
++++-.-++-++..+.+|.+.-+..+..|-.-.--||..|.|.
T Consensus 356 ar~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 356 ARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444443333333333333333333333333
No 307
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.66 E-value=1.2e+03 Score=26.20 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 255 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 255 (354)
+.+.+++++.+..+..+++..+..+..+-..|...-...+.....++..+
T Consensus 870 ~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 919 (1164)
T TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555554444444444444333
No 308
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.61 E-value=8.3e+02 Score=24.16 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 018564 171 FLQAQGEQLRRALAEK 186 (354)
Q Consensus 171 ~i~~q~ErLR~~L~E~ 186 (354)
|+..+.++++..|.+.
T Consensus 174 fl~~ql~~~~~~l~~a 189 (362)
T TIGR01010 174 FAENEVKEAEQRLNAT 189 (362)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555554444444
No 309
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.59 E-value=5.5e+02 Score=23.76 Aligned_cols=11 Identities=0% Similarity=0.205 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 018564 165 RDELDQFLQAQ 175 (354)
Q Consensus 165 ~~EID~~i~~q 175 (354)
..+|..++..-
T Consensus 10 ~~~~~~~~~~~ 20 (178)
T PRK14161 10 EQTINDIAEEI 20 (178)
T ss_pred HHHHHHHHHhh
Confidence 34454444433
No 310
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=20.59 E-value=4e+02 Score=20.43 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018564 208 EKEAEVEKATRRNAELEARAAQLSVEAQVW 237 (354)
Q Consensus 208 eKEeEIera~rrn~ELEERlrql~~E~QaW 237 (354)
++...|.++.+...|.++-|+++..|.+.-
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566667777777777888888888887654
No 311
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=20.50 E-value=37 Score=36.35 Aligned_cols=27 Identities=26% Similarity=0.701 Sum_probs=21.3
Q ss_pred CcccccccccccccceEEeCCCCcc--cchhhHHh
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLC--VCTECDRV 334 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlc--lC~~C~~~ 334 (354)
..+..|.||.++.+ |.|+. .|..|...
T Consensus 267 ~~e~~CAVCgDnAa------CqHYGvRTCEGCKGF 295 (605)
T KOG4217|consen 267 SAEGLCAVCGDNAA------CQHYGVRTCEGCKGF 295 (605)
T ss_pred CccceeeecCChHH------hhhcCccccccchHH
Confidence 34679999999986 88987 48888654
No 312
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=20.41 E-value=8.3e+02 Score=24.08 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=65.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHH------HHHHHHHHH
Q 018564 161 IKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARL-LREKEAEVEKATRRNAELE------ARAAQLSVE 233 (354)
Q Consensus 161 l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~r-LReKEeEIera~rrn~ELE------ERlrql~~E 233 (354)
+..-.--||.|.--.+++.-..|++.|+.|..++..+++.....- |-+|-+=+=...|.|.+|+ |++-.++.|
T Consensus 112 ~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~E 191 (247)
T KOG3976|consen 112 IKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQLEATYREQLVRVAKE 191 (247)
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 466677899999999999999999999999999998888643221 3333333444556665554 566778888
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 018564 234 AQVWQAKARAQEATAASL 251 (354)
Q Consensus 234 ~QaWq~~A~~nEA~a~~L 251 (354)
.-.|-+.=.+.|++...+
T Consensus 192 ~K~~lDy~v~~e~~~rr~ 209 (247)
T KOG3976|consen 192 VKRRLDYWVETEASKRRL 209 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888777777765543
No 313
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.32 E-value=1.2e+03 Score=25.81 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018564 170 QFLQAQGEQLRRALAEK 186 (354)
Q Consensus 170 ~~i~~q~ErLR~~L~E~ 186 (354)
.||..+.+.++..|++.
T Consensus 270 ~fL~~qL~~l~~~L~~a 286 (726)
T PRK09841 270 EFLQRQLPEVRSELDQA 286 (726)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57777776666666544
No 314
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=20.15 E-value=1.1e+03 Score=26.39 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=33.9
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 148 SLLSFLSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQ 188 (354)
Q Consensus 148 ~~~s~l~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rq 188 (354)
.+.++++-.+..-+.....|.+-+++.+.+++|.+-+....
T Consensus 344 lF~~lvp~~v~~a~s~yse~ka~ll~~~~~~~~~~~q~l~~ 384 (714)
T KOG2220|consen 344 LFASLVPVEVAEALSAYSEEKADLLRESIARLREANQLLNS 384 (714)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35677788888888899999999999999998887776653
Done!