Query 018564
Match_columns 354
No_of_seqs 259 out of 1084
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 17:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.4 1.8E-13 6.1E-18 104.5 4.3 50 304-353 15-64 (68)
2 2vje_B MDM4 protein; proto-onc 99.3 2.3E-13 7.9E-18 102.1 2.4 52 303-354 6-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.3 7.5E-13 2.6E-17 99.6 1.6 51 304-354 8-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.3 1.9E-12 6.7E-17 101.3 3.6 51 304-354 18-68 (79)
5 4ic3_A E3 ubiquitin-protein li 99.3 2.7E-12 9.2E-17 98.7 3.8 51 304-354 24-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.2 2.8E-12 9.6E-17 98.5 1.6 51 304-354 25-75 (75)
7 3t6p_A Baculoviral IAP repeat- 98.9 2.8E-10 9.6E-15 111.5 3.8 51 304-354 295-345 (345)
8 4ayc_A E3 ubiquitin-protein li 98.4 4.3E-06 1.5E-10 70.7 12.0 44 305-349 54-101 (138)
9 1chc_A Equine herpes virus-1 r 98.2 6.9E-07 2.3E-11 66.0 3.5 48 304-352 5-57 (68)
10 2ysl_A Tripartite motif-contai 98.1 1.8E-06 6.3E-11 64.4 4.3 44 303-347 19-69 (73)
11 2d8t_A Dactylidin, ring finger 98.1 1.4E-06 4.7E-11 65.4 3.4 43 304-347 15-61 (71)
12 2ecn_A Ring finger protein 141 98.1 4.8E-07 1.6E-11 67.4 0.4 47 304-352 15-65 (70)
13 2xeu_A Ring finger protein 4; 98.0 2.2E-06 7.6E-11 62.0 3.1 49 304-353 3-64 (64)
14 2y1n_A E3 ubiquitin-protein li 98.0 2.5E-06 8.5E-11 85.0 4.1 50 303-353 331-385 (389)
15 2ecm_A Ring finger and CHY zin 98.0 2.8E-06 9.6E-11 60.1 3.2 43 304-347 5-55 (55)
16 2csy_A Zinc finger protein 183 98.0 7.3E-06 2.5E-10 62.8 4.8 45 304-349 15-63 (81)
17 2ct2_A Tripartite motif protei 97.9 4E-06 1.4E-10 64.4 2.9 43 304-347 15-68 (88)
18 3ng2_A RNF4, snurf, ring finge 97.9 3E-06 1E-10 62.8 1.7 43 304-347 10-63 (71)
19 2ecw_A Tripartite motif-contai 97.9 6.4E-06 2.2E-10 62.5 3.4 43 304-347 19-71 (85)
20 2ecv_A Tripartite motif-contai 97.9 5.3E-06 1.8E-10 63.0 2.7 43 304-347 19-71 (85)
21 2egp_A Tripartite motif-contai 97.9 4.5E-06 1.5E-10 63.1 2.0 43 304-347 12-65 (79)
22 2ea6_A Ring finger protein 4; 97.9 5.9E-06 2E-10 60.6 2.5 43 304-347 15-68 (69)
23 2kiz_A E3 ubiquitin-protein li 97.8 1.4E-05 4.7E-10 59.2 4.2 45 304-349 14-65 (69)
24 2ect_A Ring finger protein 126 97.8 1.7E-05 5.7E-10 60.1 4.3 43 304-347 15-64 (78)
25 1iym_A EL5; ring-H2 finger, ub 97.8 1.6E-05 5.5E-10 56.2 3.6 42 304-346 5-54 (55)
26 2djb_A Polycomb group ring fin 97.7 1.8E-05 6.2E-10 59.4 3.5 44 304-348 15-63 (72)
27 2ecy_A TNF receptor-associated 97.7 1.8E-05 6E-10 58.4 3.3 44 303-347 14-62 (66)
28 1bor_A Transcription factor PM 97.7 8.5E-06 2.9E-10 59.0 1.5 43 304-347 6-49 (56)
29 1x4j_A Ring finger protein 38; 97.7 1.9E-05 6.4E-10 59.6 3.5 44 303-347 22-72 (75)
30 1g25_A CDK-activating kinase a 97.7 1.1E-05 3.6E-10 59.4 2.0 43 304-347 3-55 (65)
31 2l0b_A E3 ubiquitin-protein li 97.7 1.6E-05 5.5E-10 62.7 3.1 44 303-347 39-89 (91)
32 2ep4_A Ring finger protein 24; 97.7 1.8E-05 6.1E-10 59.4 2.6 46 304-350 15-67 (74)
33 3fl2_A E3 ubiquitin-protein li 97.7 2.1E-05 7.2E-10 65.0 3.2 43 304-347 52-99 (124)
34 2yur_A Retinoblastoma-binding 97.6 5.1E-05 1.7E-09 57.4 4.7 43 303-346 14-63 (74)
35 1e4u_A Transcriptional repress 97.6 1.1E-05 3.7E-10 62.9 0.3 45 304-349 11-64 (78)
36 1jm7_A BRCA1, breast cancer ty 97.6 1.4E-05 4.8E-10 64.2 0.9 43 304-347 21-70 (112)
37 3l11_A E3 ubiquitin-protein li 97.6 2.6E-05 9E-10 63.5 2.4 43 304-347 15-62 (115)
38 3ztg_A E3 ubiquitin-protein li 97.5 3.2E-05 1.1E-09 60.3 2.6 41 304-345 13-60 (92)
39 3lrq_A E3 ubiquitin-protein li 97.5 3.1E-05 1.1E-09 62.1 2.3 43 304-347 22-70 (100)
40 2ysj_A Tripartite motif-contai 97.5 5E-05 1.7E-09 55.3 3.2 38 303-341 19-63 (63)
41 2ckl_A Polycomb group ring fin 97.5 4.4E-05 1.5E-09 61.6 3.0 43 304-347 15-62 (108)
42 2ecj_A Tripartite motif-contai 97.5 4.9E-05 1.7E-09 54.0 2.8 37 304-341 15-58 (58)
43 1z6u_A NP95-like ring finger p 97.5 4.6E-05 1.6E-09 65.8 3.1 44 304-348 78-126 (150)
44 2y43_A E3 ubiquitin-protein li 97.5 5.6E-05 1.9E-09 59.9 3.2 43 304-347 22-69 (99)
45 2ckl_B Ubiquitin ligase protei 97.4 6.9E-05 2.4E-09 64.8 3.5 42 304-346 54-101 (165)
46 1t1h_A Gspef-atpub14, armadill 97.4 7.9E-05 2.7E-09 56.3 3.3 44 303-347 7-55 (78)
47 3hct_A TNF receptor-associated 97.3 9.1E-05 3.1E-09 60.8 2.9 44 303-347 17-65 (118)
48 1jm7_B BARD1, BRCA1-associated 97.3 6.4E-05 2.2E-09 61.7 1.9 42 304-346 22-66 (117)
49 1v87_A Deltex protein 2; ring- 97.3 6.6E-05 2.2E-09 60.7 1.9 42 304-346 25-93 (114)
50 4ap4_A E3 ubiquitin ligase RNF 97.3 0.00016 5.5E-09 58.8 3.5 51 302-353 70-133 (133)
51 2f42_A STIP1 homology and U-bo 97.2 0.00096 3.3E-08 59.9 8.5 45 302-347 104-153 (179)
52 4ap4_A E3 ubiquitin ligase RNF 97.2 0.00014 4.7E-09 59.3 2.7 44 303-347 6-60 (133)
53 1rmd_A RAG1; V(D)J recombinati 97.1 0.00022 7.5E-09 58.0 3.2 43 304-347 23-70 (116)
54 2ecl_A Ring-box protein 2; RNF 97.0 0.0004 1.4E-08 53.7 3.2 42 305-347 27-76 (81)
55 3knv_A TNF receptor-associated 96.7 0.00026 8.8E-09 60.6 0.3 43 302-345 29-76 (141)
56 2c2l_A CHIP, carboxy terminus 96.7 0.00096 3.3E-08 60.6 3.7 44 303-347 207-255 (281)
57 1wgm_A Ubiquitin conjugation f 96.7 0.0021 7.1E-08 51.8 5.2 45 302-347 20-69 (98)
58 2kre_A Ubiquitin conjugation f 96.6 0.0026 8.7E-08 51.5 5.2 45 302-347 27-75 (100)
59 3hcs_A TNF receptor-associated 96.5 0.0014 4.8E-08 56.6 3.5 44 303-347 17-65 (170)
60 2kr4_A Ubiquitin conjugation f 96.5 0.0025 8.5E-08 49.8 4.4 45 302-347 12-60 (85)
61 3dpl_R Ring-box protein 1; ubi 96.3 0.0027 9.2E-08 52.1 3.5 29 317-346 68-100 (106)
62 2d8s_A Cellular modulator of i 95.6 0.011 3.7E-07 46.1 4.1 43 304-347 15-70 (80)
63 4a0k_B E3 ubiquitin-protein li 95.2 0.0035 1.2E-07 52.6 0.2 41 304-345 48-110 (117)
64 3vk6_A E3 ubiquitin-protein li 95.0 0.02 7E-07 47.2 4.1 43 307-350 4-52 (101)
65 2yu4_A E3 SUMO-protein ligase 94.4 0.022 7.5E-07 45.0 2.9 40 304-344 7-59 (94)
66 1wim_A KIAA0161 protein; ring 93.9 0.013 4.5E-07 45.9 0.7 40 304-344 5-61 (94)
67 2oqq_A Transcription factor HY 92.7 0.35 1.2E-05 33.9 6.2 33 209-241 8-40 (42)
68 2v71_A Nuclear distribution pr 92.7 3 0.0001 37.7 14.2 52 207-258 45-100 (189)
69 3htk_C E3 SUMO-protein ligase 91.9 0.092 3.1E-06 50.0 3.3 44 302-346 179-231 (267)
70 1vyx_A ORF K3, K3RING; zinc-bi 88.0 0.24 8.3E-06 36.4 2.2 43 304-346 6-58 (60)
71 4etp_A Kinesin-like protein KA 84.7 2.5 8.5E-05 41.8 8.1 57 204-260 3-59 (403)
72 2bay_A PRE-mRNA splicing facto 84.3 0.52 1.8E-05 34.6 2.3 43 304-347 3-50 (61)
73 1ci6_A Transcription factor AT 84.0 2.7 9.4E-05 31.3 6.2 36 206-241 25-60 (63)
74 3oja_B Anopheles plasmodium-re 83.8 32 0.0011 34.3 15.9 58 195-252 507-564 (597)
75 3mq9_A Bone marrow stromal ant 82.8 10 0.00034 37.1 11.6 50 167-216 397-455 (471)
76 2ko5_A Ring finger protein Z; 81.3 0.38 1.3E-05 39.4 0.6 46 304-351 28-77 (99)
77 3oja_B Anopheles plasmodium-re 81.1 23 0.00077 35.4 13.7 71 191-261 507-580 (597)
78 3s9g_A Protein hexim1; cyclin 79.7 17 0.00059 29.8 9.9 31 202-239 63-93 (104)
79 3oja_A Leucine-rich immune mol 74.1 49 0.0017 32.3 13.5 57 205-261 422-478 (487)
80 1wlq_A Geminin; coiled-coil; 2 73.9 17 0.00059 28.8 8.1 50 178-228 20-69 (83)
81 1jnm_A Proto-oncogene C-JUN; B 72.3 17 0.00057 26.6 7.4 29 207-235 25-53 (62)
82 2q6q_A Spindle POLE BODY compo 72.3 31 0.0011 26.6 8.9 51 202-252 8-58 (74)
83 3na7_A HP0958; flagellar bioge 71.4 61 0.0021 29.5 13.4 51 205-255 91-141 (256)
84 3mq7_A Bone marrow stromal ant 71.2 46 0.0016 28.0 12.8 82 154-237 14-104 (121)
85 2v66_B Nuclear distribution pr 70.8 44 0.0015 27.7 14.1 87 171-262 7-93 (111)
86 1ez3_A Syntaxin-1A; three heli 70.6 24 0.00082 28.3 8.8 85 173-260 18-109 (127)
87 1uii_A Geminin; human, DNA rep 70.0 39 0.0013 26.8 9.4 51 176-229 26-78 (83)
88 1dip_A Delta-sleep-inducing pe 69.9 2.8 9.7E-05 32.8 2.7 31 211-241 15-45 (78)
89 1t6f_A Geminin; coiled-coil, c 69.9 5.7 0.00019 27.0 3.8 22 204-225 14-35 (37)
90 3iv1_A Tumor susceptibility ge 69.7 23 0.0008 27.7 8.0 30 148-177 3-36 (78)
91 3iv1_A Tumor susceptibility ge 69.2 39 0.0013 26.4 10.4 46 193-238 3-59 (78)
92 1x4t_A Hypothetical protein LO 69.1 17 0.00059 29.3 7.3 26 205-230 53-78 (92)
93 1kd8_A GABH AIV, GCN4 acid bas 68.3 6.5 0.00022 26.6 3.8 29 205-233 2-30 (36)
94 2zxx_A Geminin; coiled-coil, c 67.1 37 0.0013 26.6 8.7 50 178-230 16-67 (79)
95 2jee_A YIIU; FTSZ, septum, coi 66.5 38 0.0013 26.7 8.6 23 218-240 48-70 (81)
96 2akf_A Coronin-1A; coiled coil 65.9 12 0.00043 24.3 4.7 28 209-236 4-31 (32)
97 1kd8_B GABH BLL, GCN4 acid bas 65.7 7.5 0.00026 26.3 3.8 27 205-231 2-28 (36)
98 2v66_B Nuclear distribution pr 65.4 20 0.00068 29.8 7.2 42 217-258 2-47 (111)
99 1hjb_A Ccaat/enhancer binding 64.4 52 0.0018 26.1 9.4 29 212-240 44-72 (87)
100 2wvr_A Geminin; DNA replicatio 64.0 37 0.0013 31.1 9.3 60 177-251 96-155 (209)
101 1gd2_E Transcription factor PA 61.7 42 0.0014 25.6 7.9 28 209-236 41-68 (70)
102 3hnw_A Uncharacterized protein 60.7 77 0.0026 26.8 10.7 70 156-235 65-134 (138)
103 3ol1_A Vimentin; structural ge 60.4 70 0.0024 26.3 13.0 89 159-254 20-116 (119)
104 1t2k_D Cyclic-AMP-dependent tr 60.3 46 0.0016 24.1 9.7 35 206-240 24-58 (61)
105 3mq7_A Bone marrow stromal ant 58.8 54 0.0019 27.6 8.7 26 203-228 84-109 (121)
106 4b8c_D Glucose-repressible alc 58.1 2.7 9.4E-05 43.8 0.9 7 50-56 32-38 (727)
107 1a93_B MAX protein, coiled coi 58.1 15 0.0005 24.7 4.1 27 205-231 8-34 (34)
108 2wt7_A Proto-oncogene protein 57.5 53 0.0018 24.0 10.0 36 206-241 25-60 (63)
109 2dfs_A Myosin-5A; myosin-V, in 57.3 1.2E+02 0.0043 33.6 13.8 22 210-231 997-1018(1080)
110 3ghg_A Fibrinogen alpha chain; 57.1 1.4E+02 0.0047 31.0 13.0 90 167-257 57-149 (562)
111 3k1l_B Fancl; UBC, ring, RWD, 57.0 2.7 9.1E-05 41.8 0.5 46 304-350 308-376 (381)
112 2l5g_B Putative uncharacterize 56.3 29 0.001 24.2 5.6 31 204-234 9-39 (42)
113 1s94_A S-syntaxin; three helix 56.1 63 0.0022 27.7 9.2 87 172-260 48-140 (180)
114 3nmd_A CGMP dependent protein 56.0 31 0.0011 26.7 6.2 31 206-236 35-65 (72)
115 1jnm_A Proto-oncogene C-JUN; B 51.6 40 0.0014 24.5 6.1 35 219-253 23-57 (62)
116 3vem_A Helicase protein MOM1; 51.4 1.1E+02 0.0037 25.6 10.5 31 148-178 28-58 (115)
117 1gu4_A CAAT/enhancer binding p 49.0 91 0.0031 24.1 8.3 28 212-239 44-71 (78)
118 2b5u_A Colicin E3; high resolu 48.9 1.2E+02 0.004 31.4 10.9 23 206-228 323-345 (551)
119 3e98_A GAF domain of unknown f 47.9 49 0.0017 30.5 7.5 20 213-232 74-93 (252)
120 1deq_A Fibrinogen (alpha chain 47.2 2.3E+02 0.0078 28.2 14.5 76 153-228 40-123 (390)
121 2jun_A Midline-1; B-BOX, TRIM, 47.0 6.1 0.00021 30.6 1.1 30 304-334 3-35 (101)
122 1deq_A Fibrinogen (alpha chain 44.9 2.5E+02 0.0084 28.0 12.3 66 161-227 79-157 (390)
123 3m48_A General control protein 44.6 26 0.00088 23.3 3.6 27 205-231 1-27 (33)
124 2dgc_A Protein (GCN4); basic d 44.5 78 0.0027 23.3 6.8 17 220-236 32-48 (63)
125 2wq1_A General control protein 44.4 28 0.00097 23.1 3.8 27 205-231 1-27 (33)
126 1uo4_A General control protein 44.3 28 0.00097 23.3 3.8 27 205-231 2-28 (34)
127 3c3g_A Alpha/beta peptide with 43.9 32 0.0011 22.9 3.9 27 205-231 1-27 (33)
128 3vkg_A Dynein heavy chain, cyt 43.8 2.5E+02 0.0084 35.2 14.4 12 161-172 1950-1961(3245)
129 3u06_A Protein claret segregat 43.6 80 0.0027 31.2 8.7 53 207-259 6-58 (412)
130 1weo_A Cellulose synthase, cat 42.5 17 0.00057 29.5 2.9 44 303-346 15-69 (93)
131 3m91_A Proteasome-associated A 41.5 49 0.0017 23.8 5.0 31 203-233 8-38 (51)
132 2oxj_A Hybrid alpha/beta pepti 41.2 37 0.0013 22.7 3.9 27 205-231 2-28 (34)
133 3ghg_A Fibrinogen alpha chain; 40.7 1E+02 0.0034 32.1 9.0 72 159-232 74-145 (562)
134 2hy6_A General control protein 40.2 33 0.0011 22.9 3.6 27 205-231 2-28 (34)
135 3nmd_A CGMP dependent protein 40.0 63 0.0022 24.9 5.7 13 204-216 47-59 (72)
136 1wle_A Seryl-tRNA synthetase; 40.0 2.2E+02 0.0076 28.9 11.5 78 168-262 69-153 (501)
137 3cvf_A Homer-3, homer protein 39.2 1.2E+02 0.0042 23.6 7.4 25 214-238 16-40 (79)
138 4egx_A Kinesin-like protein KI 39.1 95 0.0033 27.2 7.7 30 198-230 6-35 (184)
139 3s9g_A Protein hexim1; cyclin 38.6 1.6E+02 0.0056 24.1 9.6 22 217-238 64-85 (104)
140 1a92_A Delta antigen; leucine 36.9 37 0.0013 24.5 3.7 23 203-225 13-35 (50)
141 1d7m_A Cortexillin I; coiled-c 36.8 1.7E+02 0.0057 23.7 10.2 12 161-172 23-34 (101)
142 3c3f_A Alpha/beta peptide with 35.8 50 0.0017 22.0 3.9 27 205-231 2-28 (34)
143 3i00_A HIP-I, huntingtin-inter 35.2 1.9E+02 0.0066 23.9 9.9 22 166-188 15-36 (120)
144 2fiy_A Protein FDHE homolog; F 34.8 17 0.0006 34.8 2.3 42 304-345 182-232 (309)
145 2bni_A General control protein 34.0 51 0.0018 22.0 3.8 27 205-231 2-28 (34)
146 1jad_A PLC-beta, phospholipase 34.0 3E+02 0.01 25.7 13.7 92 159-257 32-145 (251)
147 2ct0_A Non-SMC element 1 homol 33.9 36 0.0012 25.8 3.6 43 305-348 16-65 (74)
148 3cve_A Homer protein homolog 1 33.5 1.6E+02 0.0055 22.5 8.2 26 213-238 9-34 (72)
149 2r2v_A GCN4 leucine zipper; co 33.5 53 0.0018 21.9 3.8 27 205-231 2-28 (34)
150 1yzm_A FYVE-finger-containing 33.1 81 0.0028 22.8 5.1 42 172-217 7-48 (51)
151 3a7p_A Autophagy protein 16; c 32.9 2.5E+02 0.0084 24.5 11.2 26 210-235 102-127 (152)
152 1z0k_B FYVE-finger-containing 32.9 80 0.0027 24.2 5.2 42 171-216 24-65 (69)
153 3tnu_A Keratin, type I cytoske 32.1 2.1E+02 0.0072 23.5 9.5 94 155-261 9-106 (131)
154 1t3j_A Mitofusin 1; coiled coi 32.1 1.8E+02 0.0062 23.5 7.5 32 206-241 49-80 (96)
155 1hjb_A Ccaat/enhancer binding 31.2 1.4E+02 0.0047 23.6 6.6 41 217-257 35-75 (87)
156 1m1j_B Fibrinogen beta chain; 31.1 4.3E+02 0.015 26.7 11.8 18 213-230 141-158 (464)
157 1gd2_E Transcription factor PA 30.5 1.8E+02 0.006 22.0 8.3 10 186-195 11-20 (70)
158 1x79_B RAB GTPase binding effe 30.0 2.4E+02 0.008 23.4 9.3 52 207-258 16-71 (112)
159 1fmh_A General control protein 29.6 95 0.0032 20.1 4.4 27 208-234 5-31 (33)
160 1z0j_B FYVE-finger-containing 29.3 91 0.0031 23.2 4.9 44 170-217 12-55 (59)
161 3a7p_A Autophagy protein 16; c 29.1 2.5E+02 0.0087 24.4 8.5 7 163-169 35-41 (152)
162 1nlw_A MAD protein, MAX dimeri 29.0 1.9E+02 0.0066 22.0 7.7 53 182-234 7-70 (80)
163 1ci6_A Transcription factor AT 28.7 1.7E+02 0.0058 21.3 8.2 50 201-256 12-61 (63)
164 3pwf_A Rubrerythrin; non heme 28.5 20 0.00067 31.4 1.4 16 336-351 154-169 (170)
165 2yy0_A C-MYC-binding protein; 27.4 1.1E+02 0.0039 21.8 5.1 26 211-236 19-44 (53)
166 2p4v_A Transcription elongatio 27.3 97 0.0033 26.5 5.6 9 249-257 63-71 (158)
167 3o0z_A RHO-associated protein 27.2 3.2E+02 0.011 24.0 14.4 33 156-188 6-41 (168)
168 3tnu_B Keratin, type II cytosk 26.9 2.6E+02 0.0088 22.8 10.4 21 212-232 76-96 (129)
169 4ani_A Protein GRPE; chaperone 26.8 1.2E+02 0.004 27.7 6.2 23 166-189 59-81 (213)
170 3kin_B Kinesin heavy chain; mo 26.6 85 0.0029 25.7 4.9 25 214-238 92-116 (117)
171 1yk4_A Rubredoxin, RD; electro 26.2 29 0.00099 24.8 1.7 15 337-351 37-51 (52)
172 1zxa_A CGMP-dependent protein 26.0 93 0.0032 23.6 4.5 18 199-216 13-30 (67)
173 1i84_S Smooth muscle myosin he 26.0 1.7E+02 0.0057 32.5 8.5 29 206-234 908-936 (1184)
174 1e8j_A Rubredoxin; iron-sulfur 25.7 27 0.00091 25.1 1.4 14 337-350 38-51 (52)
175 1yuz_A Nigerythrin; rubrythrin 25.5 19 0.00065 32.2 0.7 15 336-350 187-201 (202)
176 4rxn_A Rubredoxin; electron tr 25.0 26 0.00089 25.4 1.3 14 337-350 38-51 (54)
177 2v3b_B Rubredoxin 2, rubredoxi 24.9 29 0.00099 25.1 1.5 15 337-351 38-52 (55)
178 1vcs_A Vesicle transport throu 24.4 2.2E+02 0.0074 22.5 6.8 50 211-260 38-95 (102)
179 3onj_A T-snare VTI1; helix, HA 24.4 2.6E+02 0.0087 21.9 8.4 52 209-260 32-94 (97)
180 2dfs_A Myosin-5A; myosin-V, in 24.4 7.5E+02 0.026 27.4 16.1 18 221-238 1019-1036(1080)
181 2kn9_A Rubredoxin; metalloprot 24.2 35 0.0012 26.8 1.9 15 337-351 62-76 (81)
182 3ghg_B Fibrinogen beta chain; 24.0 2.4E+02 0.0083 28.6 8.5 101 154-257 79-188 (461)
183 2i1j_A Moesin; FERM, coiled-co 23.3 2.2E+02 0.0075 29.2 8.2 25 221-245 338-362 (575)
184 2wvr_A Geminin; DNA replicatio 23.1 3.9E+02 0.013 24.4 8.8 52 170-230 97-148 (209)
185 3ipq_A Oxysterols receptor LXR 22.9 31 0.0011 31.7 1.6 16 162-177 44-59 (283)
186 3ni0_A Bone marrow stromal ant 22.7 3.1E+02 0.011 22.2 12.9 58 204-261 32-89 (99)
187 2dgc_A Protein (GCN4); basic d 22.6 2.3E+02 0.0078 20.7 6.4 30 204-233 30-59 (63)
188 1gk4_A Vimentin; intermediate 22.6 2.6E+02 0.0089 21.3 8.2 25 210-234 25-49 (84)
189 1gu4_A CAAT/enhancer binding p 22.2 1.3E+02 0.0045 23.2 4.9 36 217-252 35-70 (78)
190 3v1a_A Computational design, M 21.6 1.4E+02 0.0049 21.2 4.6 39 173-215 7-45 (48)
191 6rxn_A Rubredoxin; electron tr 21.4 34 0.0012 24.0 1.3 14 337-350 32-45 (46)
192 2i1j_A Moesin; FERM, coiled-co 21.2 91 0.0031 32.1 4.9 43 199-241 337-379 (575)
193 2wt7_A Proto-oncogene protein 20.7 2.5E+02 0.0084 20.3 8.8 37 219-255 24-60 (63)
194 1dx8_A Rubredoxin; electron tr 20.6 35 0.0012 25.9 1.3 15 337-351 42-56 (70)
195 1grj_A GREA protein; transcrip 20.4 1.2E+02 0.0042 25.8 4.9 10 248-257 62-71 (158)
196 3thf_A Protein shroom; coiled- 20.3 2.7E+02 0.0093 25.1 7.2 39 209-247 17-55 (190)
197 1t2k_D Cyclic-AMP-dependent tr 20.2 2.4E+02 0.0083 20.1 8.4 33 220-252 24-56 (61)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=104.52 Aligned_cols=50 Identities=34% Similarity=0.806 Sum_probs=48.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhCCCCCCCcccccceEEEee
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFL 353 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l 353 (354)
...|+||+++.++++|+||+|+++|..|...+..||+||.+|...++||.
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 56899999999999999999999999999999999999999999999986
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.34 E-value=2.3e-13 Score=102.07 Aligned_cols=52 Identities=27% Similarity=0.622 Sum_probs=47.6
Q ss_pred cccccccccccccceEEe--CCCCcccchhhHHhCC----CCCCCcccccceEEEeeC
Q 018564 303 SGPACKGCRKRVASVVLL--PCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFLS 354 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLL--PCrHlclC~~C~~~l~----~CPvCR~~i~~sV~V~lS 354 (354)
....|+||+++.++.+++ ||||+++|..|+..+. .||+||.+|...++||+|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 356899999999988777 9999999999998876 999999999999999987
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.27 E-value=7.5e-13 Score=99.57 Aligned_cols=51 Identities=22% Similarity=0.529 Sum_probs=47.0
Q ss_pred ccccccccccccceEEe--CCCCcccchhhHHhCC----CCCCCcccccceEEEeeC
Q 018564 304 GPACKGCRKRVASVVLL--PCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFLS 354 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLL--PCrHlclC~~C~~~l~----~CPvCR~~i~~sV~V~lS 354 (354)
...|.||+++.++++|+ ||||+++|..|...+. .||+||.+|...++||+|
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 46899999999999998 9999999999998764 699999999999999986
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.26 E-value=1.9e-12 Score=101.31 Aligned_cols=51 Identities=25% Similarity=0.659 Sum_probs=48.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhCCCCCCCcccccceEEEeeC
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 354 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~lS 354 (354)
...|+||++...+++|+||||.++|..|...+..||+||.+|...++||++
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 468999999999999999999999999999999999999999999999974
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.25 E-value=2.7e-12 Score=98.70 Aligned_cols=51 Identities=33% Similarity=0.882 Sum_probs=48.3
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhCCCCCCCcccccceEEEeeC
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 354 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~lS 354 (354)
...|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 468999999999999999999999999999999999999999999999997
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.8e-12 Score=98.54 Aligned_cols=51 Identities=35% Similarity=0.915 Sum_probs=49.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhCCCCCCCcccccceEEEeeC
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 354 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~lS 354 (354)
...|.||++...+++++||+|.++|..|...+..||+||.+|...++||+|
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 568999999999999999999999999999999999999999999999997
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.95 E-value=2.8e-10 Score=111.49 Aligned_cols=51 Identities=41% Similarity=0.946 Sum_probs=47.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhCCCCCCCcccccceEEEeeC
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 354 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~lS 354 (354)
...|.||++...+.+++||||.|+|..|...+..||+||.+|...++||+|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 468999999999999999999999999999999999999999999999997
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.36 E-value=4.3e-06 Score=70.75 Aligned_cols=44 Identities=27% Similarity=0.562 Sum_probs=37.6
Q ss_pred cccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccceE
Q 018564 305 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 349 (354)
Q Consensus 305 ~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~sV 349 (354)
..|.||++.-.+.+++||||. +|..|... -..||+||.++....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 469999999999999999996 89999765 358999999987643
No 9
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.22 E-value=6.9e-07 Score=66.05 Aligned_cols=48 Identities=29% Similarity=0.603 Sum_probs=40.7
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhHHh----CCCCCCCcccccceEEEe
Q 018564 304 GPACKGCRKRVAS-VVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEVF 352 (354)
Q Consensus 304 ~~~C~IC~~~~~~-vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V~ 352 (354)
...|.||++...+ ++++||+|. +|..|... -..||+||.++...+..+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 5689999999887 689999999 99999754 468999999998876654
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=1.8e-06 Score=64.44 Aligned_cols=44 Identities=25% Similarity=0.564 Sum_probs=37.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHhC-------CCCCCCcccccc
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l-------~~CPvCR~~i~~ 347 (354)
....|.||++...+.+++||+|. +|..|.... ..||+||.++..
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 35689999999999888999999 899997653 279999998764
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=1.4e-06 Score=65.42 Aligned_cols=43 Identities=30% Similarity=0.701 Sum_probs=37.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC----CCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l----~~CPvCR~~i~~ 347 (354)
...|.||++...+.+++||+|. +|..|.... ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4689999999999999999999 999998763 589999998864
No 12
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=4.8e-07 Score=67.42 Aligned_cols=47 Identities=28% Similarity=0.598 Sum_probs=40.2
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC----CCCCCCcccccceEEEe
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSVEVF 352 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l----~~CPvCR~~i~~sV~V~ 352 (354)
...|.||++...+ +++||+|. +|..|.... ..||+||.++.....+|
T Consensus 15 ~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 15 EEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 4689999999888 88999999 999998763 58999999998766554
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.04 E-value=2.2e-06 Score=61.99 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=38.4
Q ss_pred ccccccccccccc-------eEEeCCCCcccchhhHHh----CCCCCCCccccc--ceEEEee
Q 018564 304 GPACKGCRKRVAS-------VVLLPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 353 (354)
Q Consensus 304 ~~~C~IC~~~~~~-------vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~--~sV~V~l 353 (354)
...|.||++.-.+ ++++||+|. +|..|... -..||+||.++. ....+||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 4579999997554 388899999 89999765 359999999887 4556654
No 14
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.02 E-value=2.5e-06 Score=85.05 Aligned_cols=50 Identities=30% Similarity=0.632 Sum_probs=42.8
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHh-----CCCCCCCcccccceEEEee
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVEVFL 353 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~sV~V~l 353 (354)
....|.||++...+.+++||+|. +|..|... ...||+||.++.....|++
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 34689999999999999999999 59999753 4799999999998776654
No 15
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.02 E-value=2.8e-06 Score=60.07 Aligned_cols=43 Identities=28% Similarity=0.709 Sum_probs=35.3
Q ss_pred ccccccccccccc----eEEeCCCCcccchhhHHhC----CCCCCCcccccc
Q 018564 304 GPACKGCRKRVAS----VVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~----vlLLPCrHlclC~~C~~~l----~~CPvCR~~i~~ 347 (354)
...|.||++.-.+ ++++||+|. +|..|.... ..||+||.++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999987544 889999996 899997653 699999998753
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=7.3e-06 Score=62.79 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=38.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccceE
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 349 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~sV 349 (354)
...|.||++...+.+++||+|. +|..|... ...||+||.++...+
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 4689999999999899999998 79999755 358999999987433
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=4e-06 Score=64.45 Aligned_cols=43 Identities=26% Similarity=0.655 Sum_probs=36.1
Q ss_pred ccccccccccccc----eEEeCCCCcccchhhHHhC-------CCCCCCcccccc
Q 018564 304 GPACKGCRKRVAS----VVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~----vlLLPCrHlclC~~C~~~l-------~~CPvCR~~i~~ 347 (354)
...|.||++.-.+ .+++||+|. +|..|.... ..||+||.++..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 5689999998877 888999997 899997653 589999997653
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.91 E-value=3e-06 Score=62.83 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=35.1
Q ss_pred ccccccccccccce-------EEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~v-------lLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
...|.||++.-.+. +++||+|. +|..|... -..||+||.++..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 45899999876553 88999998 89999754 3699999998774
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.90 E-value=6.4e-06 Score=62.50 Aligned_cols=43 Identities=23% Similarity=0.506 Sum_probs=37.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh----------CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----------l~~CPvCR~~i~~ 347 (354)
...|.||++...+.+++||+|. +|..|... ...||+||.++..
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 5689999999888889999998 89999754 4589999998764
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=5.3e-06 Score=62.95 Aligned_cols=43 Identities=23% Similarity=0.576 Sum_probs=36.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh----------CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----------l~~CPvCR~~i~~ 347 (354)
...|.||++...+.+++||+|. +|..|... ...||+||..+..
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 5689999999888888899998 89999754 4689999998764
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.86 E-value=4.5e-06 Score=63.08 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=36.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh-----------CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----------VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----------l~~CPvCR~~i~~ 347 (354)
...|.||++.-.+.+.+||+|. +|..|... ...||+||.++..
T Consensus 12 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 5689999999888788899998 89999864 3489999998753
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=5.9e-06 Score=60.60 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=35.1
Q ss_pred ccccccccccccce-------EEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~v-------lLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
...|.||++.-.+. +++||+|. +|..|... -..||+||.++..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 46899999976554 88999996 89999765 3589999998763
No 23
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.83 E-value=1.4e-05 Score=59.22 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=35.9
Q ss_pred cccccccccc---ccceEEeCCCCcccchhhHHh----CCCCCCCcccccceE
Q 018564 304 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 349 (354)
Q Consensus 304 ~~~C~IC~~~---~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~sV 349 (354)
...|.||++. ...++.+||+|. +|..|... -..||+||..+...+
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 4589999664 356888999999 89999764 368999999987654
No 24
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.80 E-value=1.7e-05 Score=60.12 Aligned_cols=43 Identities=33% Similarity=0.692 Sum_probs=34.3
Q ss_pred cccccccccc---ccceEEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 304 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~---~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
...|.||++. ...++++||+|. +|..|... -..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCC
Confidence 4689999664 456678899997 89999754 3589999998865
No 25
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.77 E-value=1.6e-05 Score=56.20 Aligned_cols=42 Identities=31% Similarity=0.661 Sum_probs=34.3
Q ss_pred ccccccccccccc---eEEeC-CCCcccchhhHHh----CCCCCCCccccc
Q 018564 304 GPACKGCRKRVAS---VVLLP-CRHLCVCTECDRV----VQACPLCFNVRD 346 (354)
Q Consensus 304 ~~~C~IC~~~~~~---vlLLP-CrHlclC~~C~~~----l~~CPvCR~~i~ 346 (354)
...|.||++.-.. ++.+| |+|. +|..|... -..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4579999987655 77787 9998 89999765 358999998764
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=1.8e-05 Score=59.37 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=36.5
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHHh----CCCCCCCcccccce
Q 018564 304 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDSS 348 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLL-PCrHlclC~~C~~~----l~~CPvCR~~i~~s 348 (354)
...|.||++...+.+.+ ||+|. +|..|... ...||+||.++...
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 56899999998877666 99998 79999754 46999999988653
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=1.8e-05 Score=58.37 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=36.8
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHh-----CCCCCCCcccccc
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 347 (354)
....|.||++...+.+.+||+|. +|..|... ...||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35689999998888777899999 89999764 2489999998764
No 28
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.72 E-value=8.5e-06 Score=58.98 Aligned_cols=43 Identities=28% Similarity=0.656 Sum_probs=36.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh-CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-l~~CPvCR~~i~~ 347 (354)
...|.||++.-.+.+++||+|. +|..|... ...||+||..+..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 4579999999888889999998 89999765 3589999998763
No 29
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.72 E-value=1.9e-05 Score=59.65 Aligned_cols=44 Identities=23% Similarity=0.528 Sum_probs=35.0
Q ss_pred ccccccccccc---ccceEEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 303 SGPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~---~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
....|.||++. ...++.+||+|. +|..|... -..||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 35689999965 334688999998 99999765 3589999998865
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.72 E-value=1.1e-05 Score=59.39 Aligned_cols=43 Identities=21% Similarity=0.625 Sum_probs=32.9
Q ss_pred ccccccccc----cccc-eEEeCCCCcccchhhHHhC-----CCCCCCcccccc
Q 018564 304 GPACKGCRK----RVAS-VVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~----~~~~-vlLLPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 347 (354)
+..|.||++ ++.. ++++||||. +|..|.... ..||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 357999999 2222 266899998 899997664 479999998864
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.71 E-value=1.6e-05 Score=62.71 Aligned_cols=44 Identities=23% Similarity=0.560 Sum_probs=35.6
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 303 SGPACKGCRKRVAS---VVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~~~---vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
....|.||++.-.. ++.+||+|. +|..|... -..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45689999876555 888999997 99999755 3599999998764
No 32
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=1.8e-05 Score=59.39 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=36.2
Q ss_pred ccccccccccc---cceEEeCCCCcccchhhHHh----CCCCCCCcccccceEE
Q 018564 304 GPACKGCRKRV---ASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVE 350 (354)
Q Consensus 304 ~~~C~IC~~~~---~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~ 350 (354)
...|.||++.- ..+..+||+|. +|..|... -..||+||.++.....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 45899998863 45677799998 99999755 3589999999876543
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.66 E-value=2.1e-05 Score=64.97 Aligned_cols=43 Identities=28% Similarity=0.563 Sum_probs=36.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh-----CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 347 (354)
...|.||++.-.+.+.+||||. +|..|... ...||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4589999999999888999998 89999754 2489999999865
No 34
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.63 E-value=5.1e-05 Score=57.39 Aligned_cols=43 Identities=28% Similarity=0.730 Sum_probs=36.1
Q ss_pred cccccccccccccceEEeC-CCCcccchhhHHhC------CCCCCCccccc
Q 018564 303 SGPACKGCRKRVASVVLLP-CRHLCVCTECDRVV------QACPLCFNVRD 346 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLP-CrHlclC~~C~~~l------~~CPvCR~~i~ 346 (354)
....|.||++.-.+.+.+| |+|. +|..|.... ..||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3568999999999989999 9998 899997552 48999999754
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.58 E-value=1.1e-05 Score=62.95 Aligned_cols=45 Identities=20% Similarity=0.536 Sum_probs=35.5
Q ss_pred ccccccccccc--cceEEeC--CCCcccchhhHHhC-----CCCCCCcccccceE
Q 018564 304 GPACKGCRKRV--ASVVLLP--CRHLCVCTECDRVV-----QACPLCFNVRDSSV 349 (354)
Q Consensus 304 ~~~C~IC~~~~--~~vlLLP--CrHlclC~~C~~~l-----~~CPvCR~~i~~sV 349 (354)
...|.||++.. .++.++| |||. +|..|...+ ..||+||.++....
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45899999965 3456766 9998 999998765 38999999987543
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.57 E-value=1.4e-05 Score=64.17 Aligned_cols=43 Identities=28% Similarity=0.562 Sum_probs=35.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC-------CCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l-------~~CPvCR~~i~~ 347 (354)
...|.||++.-.+.+.+||+|. +|..|.... ..||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4589999999888788899998 899997552 279999998764
No 37
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.57 E-value=2.6e-05 Score=63.46 Aligned_cols=43 Identities=30% Similarity=0.687 Sum_probs=36.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC-----CCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 347 (354)
...|.||++.-.+.+.+||+|. +|..|.... ..||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4689999999888888899998 899997653 389999998753
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.55 E-value=3.2e-05 Score=60.29 Aligned_cols=41 Identities=29% Similarity=0.785 Sum_probs=35.4
Q ss_pred ccccccccccccceEEeC-CCCcccchhhHHhC------CCCCCCcccc
Q 018564 304 GPACKGCRKRVASVVLLP-CRHLCVCTECDRVV------QACPLCFNVR 345 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLP-CrHlclC~~C~~~l------~~CPvCR~~i 345 (354)
...|.||++--.+-+.+| |+|. +|..|.... ..||+||.++
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 568999999988888999 9998 899997542 4899999986
No 39
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.53 E-value=3.1e-05 Score=62.09 Aligned_cols=43 Identities=26% Similarity=0.497 Sum_probs=36.5
Q ss_pred ccccccccccccceEE-eCCCCcccchhhHHh----C-CCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVL-LPCRHLCVCTECDRV----V-QACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlL-LPCrHlclC~~C~~~----l-~~CPvCR~~i~~ 347 (354)
...|.||++.-.+.+. +||+|. +|..|... - ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4689999999999888 999999 89999754 2 589999998753
No 40
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=5e-05 Score=55.31 Aligned_cols=38 Identities=29% Similarity=0.679 Sum_probs=32.2
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHh-------CCCCCCC
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-------VQACPLC 341 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-------l~~CPvC 341 (354)
....|.||++...+.+++||+|. +|..|... ...||+|
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 35689999999999888999999 89999654 2389998
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.51 E-value=4.4e-05 Score=61.55 Aligned_cols=43 Identities=21% Similarity=0.465 Sum_probs=36.6
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHHhC----CCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLL-PCRHLCVCTECDRVV----QACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLL-PCrHlclC~~C~~~l----~~CPvCR~~i~~ 347 (354)
...|.||++.-.+-+.+ ||+|. +|..|.... ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 56899999998887777 99998 899997653 589999998875
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=4.9e-05 Score=53.97 Aligned_cols=37 Identities=27% Similarity=0.758 Sum_probs=31.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC-------CCCCCC
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLC 341 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l-------~~CPvC 341 (354)
...|.||++...+.+++||+|. +|..|.... ..||+|
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 4689999999888888999999 899997553 589998
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.49 E-value=4.6e-05 Score=65.84 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=37.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC-----CCCCCCcccccce
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDSS 348 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l-----~~CPvCR~~i~~s 348 (354)
...|.||++.-.+.+.+||+|. +|..|.... ..||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3589999999999888999997 899997552 3799999998753
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.48 E-value=5.6e-05 Score=59.90 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=36.0
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLL-PCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
...|.||++.-.+-+.+ ||||. +|..|... -..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 46899999998887777 99998 89999755 2589999998874
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.44 E-value=6.9e-05 Score=64.75 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=35.2
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHHh-----CCCCCCCccccc
Q 018564 304 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV-----VQACPLCFNVRD 346 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLL-PCrHlclC~~C~~~-----l~~CPvCR~~i~ 346 (354)
...|.||++.-.+.+.+ ||+|. +|..|... -..||+||.++.
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 46899999998887776 99998 89999755 347999999875
No 46
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.42 E-value=7.9e-05 Score=56.34 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=36.9
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHh-----CCCCCCCcccccc
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 347 (354)
....|.||++--.+-+.+||||. +|..|... ...||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 35689999998888888899998 89999654 3479999998864
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.33 E-value=9.1e-05 Score=60.79 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=37.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHhC-----CCCCCCcccccc
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 347 (354)
....|.||++.-.+-+.+||+|. +|..|.... ..||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 35689999999888888999998 899997552 499999998875
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.33 E-value=6.4e-05 Score=61.66 Aligned_cols=42 Identities=26% Similarity=0.698 Sum_probs=36.5
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHHhC--CCCCCCccccc
Q 018564 304 GPACKGCRKRVASVVLL-PCRHLCVCTECDRVV--QACPLCFNVRD 346 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLL-PCrHlclC~~C~~~l--~~CPvCR~~i~ 346 (354)
...|.||++.-.+.+.+ ||||. +|..|.... ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 46899999998888888 99998 899998764 58999999875
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.33 E-value=6.6e-05 Score=60.75 Aligned_cols=42 Identities=21% Similarity=0.439 Sum_probs=31.9
Q ss_pred ccccccccccc------------------cceEEeCCCCcccchhhHHh---------CCCCCCCccccc
Q 018564 304 GPACKGCRKRV------------------ASVVLLPCRHLCVCTECDRV---------VQACPLCFNVRD 346 (354)
Q Consensus 304 ~~~C~IC~~~~------------------~~vlLLPCrHlclC~~C~~~---------l~~CPvCR~~i~ 346 (354)
...|.||++.- ..+.++||+|. +|..|... -..||+||..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 35799998864 23448899997 99999643 248999998774
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.25 E-value=0.00016 Score=58.84 Aligned_cols=51 Identities=22% Similarity=0.597 Sum_probs=39.8
Q ss_pred Ccccccccccccccce-------EEeCCCCcccchhhHHh----CCCCCCCccccc--ceEEEee
Q 018564 302 VSGPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 353 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~v-------lLLPCrHlclC~~C~~~----l~~CPvCR~~i~--~sV~V~l 353 (354)
.....|.||++.-... +.+||+|. +|..|... ...||+||.++. ..+.+|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 4456899999876553 88899998 89999754 579999999876 4556664
No 51
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.22 E-value=0.00096 Score=59.91 Aligned_cols=45 Identities=7% Similarity=-0.197 Sum_probs=36.6
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHh-----CCCCCCCcccccc
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 347 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 347 (354)
+....|.||++--.+-|++||||. +|..|-.. -.+||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 345789999999999888999997 89999543 1369999998764
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.22 E-value=0.00014 Score=59.26 Aligned_cols=44 Identities=25% Similarity=0.650 Sum_probs=35.5
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 303 SGPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~~~v-------lLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
+...|.||++.-.+- +++||||. +|..|... -..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 356899999876554 88999997 89999755 3599999998874
No 53
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.14 E-value=0.00022 Score=58.03 Aligned_cols=43 Identities=28% Similarity=0.520 Sum_probs=36.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHh-----CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 347 (354)
...|.||++...+.+.+||+|. +|..|... -..||+||.++..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4689999999999888999998 89999654 3589999998764
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0004 Score=53.68 Aligned_cols=42 Identities=29% Similarity=0.520 Sum_probs=29.4
Q ss_pred ccccccccc---cc-ceEEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 305 PACKGCRKR---VA-SVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 305 ~~C~IC~~~---~~-~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
..|.||.+. .. .+++.+|+|. ++..|... -.+||+||.++..
T Consensus 27 ~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 27 DACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred ccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 357777653 22 3344469998 89999765 3589999998753
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.74 E-value=0.00026 Score=60.62 Aligned_cols=43 Identities=23% Similarity=0.554 Sum_probs=35.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHhC-----CCCCCCcccc
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVR 345 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l-----~~CPvCR~~i 345 (354)
.....|.||++--.+-+.+||||. +|..|.... ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 346789999998888788899998 899997663 3899999975
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.68 E-value=0.00096 Score=60.65 Aligned_cols=44 Identities=7% Similarity=-0.177 Sum_probs=36.8
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHh-----CCCCCCCcccccc
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 347 (354)
....|.||++--.+-|.+||||. +|..|-.. -.+||+|+.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45689999999999999999998 89999653 2359999998864
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.68 E-value=0.0021 Score=51.83 Aligned_cols=45 Identities=13% Similarity=-0.086 Sum_probs=37.8
Q ss_pred CcccccccccccccceEEeCCC-CcccchhhHHh----CCCCCCCcccccc
Q 018564 302 VSGPACKGCRKRVASVVLLPCR-HLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCr-HlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
+....|.||++--.+-|.+||+ |. +|..|-.. ..+||+|+.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4467899999999999999999 97 89999654 3589999998764
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.59 E-value=0.0026 Score=51.49 Aligned_cols=45 Identities=9% Similarity=-0.100 Sum_probs=38.2
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
+....|.||++--.+-+.+||||. +|..|-.. ..+||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 456799999999999999999998 89999654 3589999998764
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.53 E-value=0.0014 Score=56.64 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=37.6
Q ss_pred cccccccccccccceEEeCCCCcccchhhHHhC-----CCCCCCcccccc
Q 018564 303 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 347 (354)
Q Consensus 303 ~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 347 (354)
....|.||++--.+-+.+||||. +|..|.... ..||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 35789999999888888999998 899997652 499999998875
No 60
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.48 E-value=0.0025 Score=49.81 Aligned_cols=45 Identities=9% Similarity=-0.096 Sum_probs=37.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 302 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
+....|.||++--.+-+.+||||. +|..|-.. -.+||+|+.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 346789999999999999999998 89999544 3699999998764
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.26 E-value=0.0027 Score=52.14 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=24.2
Q ss_pred eEEeCCCCcccchhhHHh----CCCCCCCccccc
Q 018564 317 VVLLPCRHLCVCTECDRV----VQACPLCFNVRD 346 (354)
Q Consensus 317 vlLLPCrHlclC~~C~~~----l~~CPvCR~~i~ 346 (354)
++++||+|. ++..|... -.+||+||....
T Consensus 68 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 68 VAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp EEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred EeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 688899998 89999765 358999999753
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.58 E-value=0.011 Score=46.15 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=32.2
Q ss_pred ccccccccccc--cceEEeCCC-----CcccchhhHHh------CCCCCCCcccccc
Q 018564 304 GPACKGCRKRV--ASVVLLPCR-----HLCVCTECDRV------VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~--~~vlLLPCr-----HlclC~~C~~~------l~~CPvCR~~i~~ 347 (354)
...|.||++.. .+.+++||+ |. +...|... ...||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45899999642 345679997 88 78999654 1489999998754
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.22 E-value=0.0035 Score=52.65 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=0.4
Q ss_pred cccccccccccc------------------ceEEeCCCCcccchhhHHh----CCCCCCCcccc
Q 018564 304 GPACKGCRKRVA------------------SVVLLPCRHLCVCTECDRV----VQACPLCFNVR 345 (354)
Q Consensus 304 ~~~C~IC~~~~~------------------~vlLLPCrHlclC~~C~~~----l~~CPvCR~~i 345 (354)
...|.||++.-. .++++||+|. ++..|... -..||+||.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 457888876532 3555799998 89999765 35899999874
No 64
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.00 E-value=0.02 Score=47.22 Aligned_cols=43 Identities=23% Similarity=0.695 Sum_probs=30.5
Q ss_pred cccccccccc-eEEeCCCCcccchhhHHh-----CCCCCCCcccccceEE
Q 018564 307 CKGCRKRVAS-VVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVE 350 (354)
Q Consensus 307 C~IC~~~~~~-vlLLPCrHlclC~~C~~~-----l~~CPvCR~~i~~sV~ 350 (354)
|..|.---.. .-++||.| .+|..|+.. .+.||+|+.+|...=.
T Consensus 4 C~~C~~Pi~iygRmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp CTTTCSBCSEEEEEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred cCccCCCeEEEeeeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 5556443222 34679999 599999854 4699999999976544
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.39 E-value=0.022 Score=44.99 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=32.7
Q ss_pred ccccccccccccceEEeC-CCCcccchhhHHh----------CCCCCC--Cccc
Q 018564 304 GPACKGCRKRVASVVLLP-CRHLCVCTECDRV----------VQACPL--CFNV 344 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLP-CrHlclC~~C~~~----------l~~CPv--CR~~ 344 (354)
...|.||++--.+-+.+| |||. +|..|-.. ..+||+ |+..
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 468999999999988897 9998 89999543 138999 9854
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.95 E-value=0.013 Score=45.87 Aligned_cols=40 Identities=25% Similarity=0.644 Sum_probs=28.9
Q ss_pred ccccccccccccc--e-EEeCCCCcccchhhHHh------------CCCCCC--Cccc
Q 018564 304 GPACKGCRKRVAS--V-VLLPCRHLCVCTECDRV------------VQACPL--CFNV 344 (354)
Q Consensus 304 ~~~C~IC~~~~~~--v-lLLPCrHlclC~~C~~~------------l~~CPv--CR~~ 344 (354)
...|.||++.-.. + .+.||+|. +|..|... .-.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4579999986332 3 33489998 99999433 128999 9987
No 67
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=92.75 E-value=0.35 Score=33.94 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 209 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 209 KEeEIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
.|.....+..+|.|||||+.-|..|++..+.+-
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344444455699999999999999999988764
No 68
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.70 E-value=3 Score=37.72 Aligned_cols=52 Identities=31% Similarity=0.389 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHH
Q 018564 207 REKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEAT----AASLQAQLQQA 258 (354)
Q Consensus 207 ReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~----a~~Lra~LqQ~ 258 (354)
.|.|.||+.+.+++.+|..++.+|..|...|+.+......- ++.|+..+.++
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l 100 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999877655443 66666655543
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.092 Score=49.99 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=34.7
Q ss_pred CcccccccccccccceEE-eCCCCcccchhhHHhC------CCCCC--Cccccc
Q 018564 302 VSGPACKGCRKRVASVVL-LPCRHLCVCTECDRVV------QACPL--CFNVRD 346 (354)
Q Consensus 302 ~~~~~C~IC~~~~~~vlL-LPCrHlclC~~C~~~l------~~CPv--CR~~i~ 346 (354)
.....|.||++--.+=|. ..|||. +|+.|-... ..||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 345789999998888665 599997 899997652 27999 998764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=88.04 E-value=0.24 Score=36.40 Aligned_cols=43 Identities=23% Similarity=0.452 Sum_probs=28.7
Q ss_pred ccccccccccccceEEeCCCCcc----cchhhHHh------CCCCCCCccccc
Q 018564 304 GPACKGCRKRVASVVLLPCRHLC----VCTECDRV------VQACPLCFNVRD 346 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlc----lC~~C~~~------l~~CPvCR~~i~ 346 (354)
...|.||++....-+++||.+.- +=..|... -..||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 46899999876666678986421 22345322 358999998764
No 71
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.67 E-value=2.5 Score=41.85 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 260 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~ 260 (354)
-+|.++++||+.+.++..+|++.++.+..|...+.......|..-..|++.|+.+..
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457889999999999999999999999999999999999999999999999988653
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=84.32 E-value=0.52 Score=34.58 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=34.7
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHHh----CCCCCCCcccccc
Q 018564 304 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDS 347 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLL-PCrHlclC~~C~~~----l~~CPvCR~~i~~ 347 (354)
...|.||++--.+-++. +|||. .|+.|-.. -.+||+++.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 35799999988888888 99998 89999655 2479999988754
No 73
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.03 E-value=2.7 Score=31.25 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
.-+.+.+++....+|.+|++++..|..|.+.|..+-
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788889999999999999999999988763
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.77 E-value=32 Score=34.29 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 195 LGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 252 (354)
Q Consensus 195 l~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 252 (354)
+......+..+...++.++.+..+...++.+.++++..|...|...-+........|+
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 3444444444555555555555555555556666666666666665555555444333
No 75
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.81 E-value=10 Score=37.07 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 018564 167 ELDQFLQAQGEQLRRALAEKRQRH------YRALLGAAEESIA---RLLREKEAEVEKA 216 (354)
Q Consensus 167 EID~~i~~q~ErLR~~L~E~rqrh------~r~ll~avE~~~~---~rLReKEeEIera 216 (354)
++.++|+.+.+++++.+.+.|.+- ...|..++|..++ +|+.|.|.||-..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTL 455 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777766543 2334455554443 2344444444333
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=81.31 E-value=0.38 Score=39.38 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=35.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHHhC----CCCCCCcccccceEEE
Q 018564 304 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSVEV 351 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLPCrHlclC~~C~~~l----~~CPvCR~~i~~sV~V 351 (354)
.--|+.|+-...+.| -|.--.+|..|-..| +.||+|..++...|+|
T Consensus 28 ~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 457999999888643 565445999998886 5999999988776654
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.15 E-value=23 Score=35.38 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018564 191 YRALLGAAEESIARLLREKEAEVEKATRRNAELE---ARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 261 (354)
Q Consensus 191 ~r~ll~avE~~~~~rLReKEeEIera~rrn~ELE---ERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 261 (354)
....+..++...+.++++.....+++..++.+++ +.+..+....+.=+.....-......++..|.++...
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444444444433333333 4444444444444444444444455566667776553
No 78
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=79.66 E-value=17 Score=29.79 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018564 202 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 239 (354)
Q Consensus 202 ~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~ 239 (354)
...++|+.++||++.+..|. .|..|+..|..
T Consensus 63 ~~~~v~eLe~everL~~ENq-------~L~~e~~~~~~ 93 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENL-------QLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHH-------HHHHHHHhhcc
Confidence 36789999999999888884 45578888875
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.07 E-value=49 Score=32.31 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 261 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 261 (354)
...+.+.|++++++...+..++++++..|+..-..........+..-+++|+-+..+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 344566667777777777888888899999988888888888888888888776543
No 80
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=73.88 E-value=17 Score=28.82 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 178 QLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAA 228 (354)
Q Consensus 178 rLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlr 228 (354)
+-|..|+|+|+.-.-..|.-.+ ..-+.+-.|++||......|.+|.+-..
T Consensus 20 ~YWk~lAE~Rr~AL~eaL~EN~-~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 20 QYWKEVAEQRRKALYEALKENE-KLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777643333333333 3355666788888887777777765543
No 81
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=72.28 E-value=17 Score=26.62 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018564 207 REKEAEVEKATRRNAELEARAAQLSVEAQ 235 (354)
Q Consensus 207 ReKEeEIera~rrn~ELEERlrql~~E~Q 235 (354)
.+.+.+++.....|.+|...+..|..|..
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555444443
No 82
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=72.27 E-value=31 Score=26.59 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 202 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 252 (354)
Q Consensus 202 ~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 252 (354)
...+|++|.+||++.+...-.|..+|-.-..=+.-.++.+..-+..+++|.
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 346789999999999888777777665555444444444444555555554
No 83
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.36 E-value=61 Score=29.53 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 255 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 255 (354)
-+.....||+.+.++...||+.+..+..+...........++.+..++..|
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666555554444433333333333333
No 84
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.23 E-value=46 Score=28.04 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=52.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHH
Q 018564 154 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKR------QRHYRALLGAAEESIA---RLLREKEAEVEKATRRNAELE 224 (354)
Q Consensus 154 ~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r------qrh~r~ll~avE~~~~---~rLReKEeEIera~rrn~ELE 224 (354)
-|+|.++-+ =..+-++|+.+.-+-...|.+.- .+-+..|..+++...+ +++.+.+.||...+.+..+.+
T Consensus 14 ~dGLrAq~E--CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 14 RDGLRAVME--ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556655432 23577777777655555555543 2223444555555333 367788888888888888888
Q ss_pred HHHHHHHHHHHHH
Q 018564 225 ARAAQLSVEAQVW 237 (354)
Q Consensus 225 ERlrql~~E~QaW 237 (354)
+.+.+|+.+++.-
T Consensus 92 ae~erlr~~~~~~ 104 (121)
T 3mq7_A 92 AEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhchhh
Confidence 8888888877643
No 85
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.83 E-value=44 Score=27.70 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018564 171 FLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAAS 250 (354)
Q Consensus 171 ~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~ 250 (354)
=|+..+++|+..+++-|.+...+-- -+...+-..+.||...+..+-.|-.+||.|...|...-..++..-+.+..
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~-----e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYA-----QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 3566677777777777665544321 11222334566889999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHhc
Q 018564 251 LQAQLQQAIMSG 262 (354)
Q Consensus 251 Lra~LqQ~l~~~ 262 (354)
+.+.|.+++-..
T Consensus 82 ~E~k~n~aiErn 93 (111)
T 2v66_B 82 FEQRLNQAIERN 93 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887543
No 86
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=70.60 E-value=24 Score=28.32 Aligned_cols=85 Identities=11% Similarity=0.204 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHhH
Q 018564 173 QAQGEQLRRALAEKRQRHYRALLGAA-EESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVW------QAKARAQE 245 (354)
Q Consensus 173 ~~q~ErLR~~L~E~rqrh~r~ll~av-E~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaW------q~~A~~nE 245 (354)
+...++|+..+.+....|.+.|-++- +..+- ++.|.-+..+.++...+..+|+.|..++..- -...+...
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~---~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 94 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPNPDEKTK---EELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRK 94 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 44556677777777777877654222 11211 2345566667777888888888887766531 12236677
Q ss_pred HHHHHHHHHHHHHHH
Q 018564 246 ATAASLQAQLQQAIM 260 (354)
Q Consensus 246 A~a~~Lra~LqQ~l~ 260 (354)
+.+.+|..+|..++.
T Consensus 95 ~q~~~L~~kf~e~m~ 109 (127)
T 1ez3_A 95 TQHSTLSRKFVEVMS 109 (127)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888899999988765
No 87
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=69.99 E-value=39 Score=26.80 Aligned_cols=51 Identities=27% Similarity=0.453 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018564 176 GEQLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAELEARAAQ 229 (354)
Q Consensus 176 ~ErLR~~L~E~rqrh~r~ll~avE~--~~~~rLReKEeEIera~rrn~ELEERlrq 229 (354)
.+.-|..|+|+|+.- |-.++++ ..-.++-.|++||......|.+|.+-+.+
T Consensus 26 se~YWk~lAE~RR~A---L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 26 SSQYWKEVAEKRRKA---LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778887743 3333333 33455667788887777777776665543
No 88
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=69.93 E-value=2.8 Score=32.77 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 211 AEVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 211 eEIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
+|+|-.+.+..||+||+.+|..||...+..|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3677778889999999999999998766543
No 89
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=69.90 E-value=5.7 Score=26.99 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEA 225 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEE 225 (354)
+-|-+|++||.+.+.+|.+|.|
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHh
Confidence 3455799999999999999876
No 90
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=69.67 E-value=23 Score=27.73 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=19.3
Q ss_pred cchhhhhhhhh----hhhhhhHHHHHHHHHHHHH
Q 018564 148 SLLSFLSDDLA----SPIKRQRDELDQFLQAQGE 177 (354)
Q Consensus 148 ~~~s~l~d~l~----~~l~qQ~~EID~~i~~q~E 177 (354)
+++|.+.|-|. -.|.+-+.|||.+-+.+.|
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~E 36 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEED 36 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455667553 3466777888887777754
No 91
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=69.23 E-value=39 Score=26.45 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHH-------HHHHHHHHHHHHHH
Q 018564 193 ALLGAAEESIARLLREK----EAEVEKATRRNAELE-------ARAAQLSVEAQVWQ 238 (354)
Q Consensus 193 ~ll~avE~~~~~rLReK----EeEIera~rrn~ELE-------ERlrql~~E~QaWq 238 (354)
+|++|||.++-+||||+ -+||+.+++-..||. +-|.+|..|-..|.
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 46788888888887775 467777776665554 34555555555444
No 92
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=69.06 E-value=17 Score=29.33 Aligned_cols=26 Identities=27% Similarity=0.435 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQL 230 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql 230 (354)
++|+++.||.++.+....||-||+.|
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999998999888766
No 93
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.28 E-value=6.5 Score=26.65 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~~E 233 (354)
||.+.|+.++.+..++++||.-+.+|...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56778889999999999999777776543
No 94
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=67.15 E-value=37 Score=26.64 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 178 QLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAELEARAAQL 230 (354)
Q Consensus 178 rLR~~L~E~rqrh~r~ll~avE~--~~~~rLReKEeEIera~rrn~ELEERlrql 230 (354)
+-|..|+|+|+. +|-.++++ ..-..+-+|++||.++...|..|.|-+.++
T Consensus 16 ~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 16 QYWKEVAEQRRK---ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp THHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777663 33334433 334566778888877777776666554443
No 95
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.47 E-value=38 Score=26.71 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 018564 218 RRNAELEARAAQLSVEAQVWQAK 240 (354)
Q Consensus 218 rrn~ELEERlrql~~E~QaWq~~ 240 (354)
.....|+....+|..|-..|+.+
T Consensus 48 ~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 48 HQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344777888888999999887
No 96
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=65.92 E-value=12 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 209 KEAEVEKATRRNAELEARAAQLSVEAQV 236 (354)
Q Consensus 209 KEeEIera~rrn~ELEERlrql~~E~Qa 236 (354)
.|+|+.+.+.--.+|.+|+.+|..-.|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888889999999988876654
No 97
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=65.66 E-value=7.5 Score=26.33 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
||.+.|+-+|....++++|+..+.+|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 567778888888999999997666654
No 98
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.36 E-value=20 Score=29.79 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHH
Q 018564 217 TRRNAELEARAAQLSVEAQVWQAKARAQEAT----AASLQAQLQQA 258 (354)
Q Consensus 217 ~rrn~ELEERlrql~~E~QaWq~~A~~nEA~----a~~Lra~LqQ~ 258 (354)
-+++.+|..+..+|..|...|+.+....... ++.|+..|.++
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~l 47 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 47 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999888776654 45555555554
No 99
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.43 E-value=52 Score=26.08 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=17.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLSVEAQVWQAK 240 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~E~QaWq~~ 240 (354)
+++...+.|..|..+|.+|..|...++.+
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666655544
No 100
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=63.97 E-value=37 Score=31.06 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018564 177 EQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASL 251 (354)
Q Consensus 177 ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~L 251 (354)
+.-|..|+|+|+. +|-.+++ |-+....+...|+|.+..|..|+..-+.+|.--+.+|..|
T Consensus 96 e~YWk~lAE~RR~---AL~eaLe------------EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi 155 (209)
T 2wvr_A 96 SQYWKEVAEKRRK---ALYEALK------------ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELI 155 (209)
T ss_dssp TTHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888873 3333333 3333333334444444555555555555555555555554
No 101
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=61.68 E-value=42 Score=25.56 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 209 KEAEVEKATRRNAELEARAAQLSVEAQV 236 (354)
Q Consensus 209 KEeEIera~rrn~ELEERlrql~~E~Qa 236 (354)
.+.+.+.+...|..|.+.+..|..|+..
T Consensus 41 le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 41 LKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555543
No 102
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.69 E-value=77 Score=26.84 Aligned_cols=70 Identities=10% Similarity=0.159 Sum_probs=42.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018564 156 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ 235 (354)
Q Consensus 156 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~Q 235 (354)
.|+.++.+-+.++|.+. .+.+.+...+.+.+. .++ .+--++.+.+.|++...+++.+|++++..|..|..
T Consensus 65 NiadEl~k~~~~~~~L~-~~l~~~~kE~~~lK~----el~-----~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLS-LDIENKDKEIYDLKH----ELI-----AAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666553 334444444444432 111 12235667778888889999999999998877653
No 103
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=60.43 E-value=70 Score=26.26 Aligned_cols=89 Identities=22% Similarity=0.409 Sum_probs=48.8
Q ss_pred hhhhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 159 SPIKRQRDELDQF------LQAQGEQLRRALAEKRQRHYRALL--GAAEESIARLLREKEAEVEKATRRNAELEARAAQL 230 (354)
Q Consensus 159 ~~l~qQ~~EID~~------i~~q~ErLR~~L~E~rqrh~r~ll--~avE~~~~~rLReKEeEIera~rrn~ELEERlrql 230 (354)
.+|..-+..||.+ |.++.+.++..+++-|.+.-..+- ..+|..+ ..||. .++.+.-...+||.++..|
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di-~~lrK---~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTL-QSFRQ---DVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhh---cccHHHHHHHHHHHHHHHH
Confidence 3444445555543 456778888888888876544332 2222211 12221 3333344457888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 231 SVEAQVWQAKARAQEATAASLQAQ 254 (354)
Q Consensus 231 ~~E~QaWq~~A~~nEA~a~~Lra~ 254 (354)
..|-.-.+ +..|..+..|+++
T Consensus 96 ~eEl~FLK---k~heeEl~eLq~q 116 (119)
T 3ol1_A 96 QEEIAFLK---KLHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHH---HHHHHHHHHHHSC
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 87765433 3345555555543
No 104
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.31 E-value=46 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 240 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~ 240 (354)
+.+.+.+++.....|.+|...+..|..|...|..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888888888888888888777654
No 105
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.77 E-value=54 Score=27.59 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 203 ARLLREKEAEVEKATRRNAELEARAA 228 (354)
Q Consensus 203 ~~rLReKEeEIera~rrn~ELEERlr 228 (354)
-.+|+++.+|+|+.++.|.+|.-|+.
T Consensus 84 nq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 84 NHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 35789999999999999999888874
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=58.10 E-value=2.7 Score=43.85 Aligned_cols=7 Identities=0% Similarity=-0.296 Sum_probs=3.0
Q ss_pred Cccchhh
Q 018564 50 RKRGREV 56 (354)
Q Consensus 50 rkr~r~~ 56 (354)
-....|.
T Consensus 32 ~~~~~~~ 38 (727)
T 4b8c_D 32 LHPHLDD 38 (727)
T ss_dssp TSGGGTS
T ss_pred ccCCCCC
Confidence 4444443
No 107
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.05 E-value=15 Score=24.68 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
|--+--.+|+.+.|.|+-||+.++.|+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 334455689999999999999998763
No 108
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=57.50 E-value=53 Score=24.00 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
+-+.+.+++.....|.+|...|..|..|...|..+-
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777788888888888888877777653
No 109
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=57.26 E-value=1.2e+02 Score=33.56 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 018564 210 EAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 210 EeEIera~rrn~ELEERlrql~ 231 (354)
++++++..+...+|||++.++.
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555554
No 110
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.11 E-value=1.4e+02 Score=31.03 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 167 ELDQFLQAQGEQLRRALAEKRQRHYRAL---LGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARA 243 (354)
Q Consensus 167 EID~~i~~q~ErLR~~L~E~rqrh~r~l---l~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~ 243 (354)
+-|+=|..-+++||..|++. ++..... ...+-....+++..-...-.....-..|||.++.-|..+.+.=-..-+.
T Consensus 57 kqErDltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556777777777 3333222 2223333334444444222233333458888887777766554444344
Q ss_pred hHHHHHHHHHHHHH
Q 018564 244 QEATAASLQAQLQQ 257 (354)
Q Consensus 244 nEA~a~~Lra~LqQ 257 (354)
-++.+..++..++.
T Consensus 136 LQsnLedq~~kIQR 149 (562)
T 3ghg_A 136 LQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555444
No 111
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=56.95 E-value=2.7 Score=41.76 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=29.5
Q ss_pred ccccccccccccc---e---E--EeCCCCcccchhhHHh---------------CCCCCCCcccccceEE
Q 018564 304 GPACKGCRKRVAS---V---V--LLPCRHLCVCTECDRV---------------VQACPLCFNVRDSSVE 350 (354)
Q Consensus 304 ~~~C~IC~~~~~~---v---l--LLPCrHlclC~~C~~~---------------l~~CPvCR~~i~~sV~ 350 (354)
...|.||++.-.. + + -.+|+|. +-..|-.. ...||+||.+|..+..
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 3578888874332 1 1 1368887 66777422 1379999999986543
No 112
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=56.34 E-value=29 Score=24.23 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E~ 234 (354)
.++---+.||++...+..+|..|++.|...+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444568899999999999999999988765
No 113
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=56.12 E-value=63 Score=27.67 Aligned_cols=87 Identities=9% Similarity=0.210 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHHhH
Q 018564 172 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQV------WQAKARAQE 245 (354)
Q Consensus 172 i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~Qa------Wq~~A~~nE 245 (354)
|+...++++..+.+..+.|.+.|.++-.....+ ++.+.-+..+.++...+..+|+.|..++.. +-...+...
T Consensus 48 I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k--~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 125 (180)
T 1s94_A 48 IRAMIDKISDNVDAVKKKHSDILSAPQTDDQMK--EELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRK 125 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 344555667777777777766655332222111 234445556677777888888888765421 222224455
Q ss_pred HHHHHHHHHHHHHHH
Q 018564 246 ATAASLQAQLQQAIM 260 (354)
Q Consensus 246 A~a~~Lra~LqQ~l~ 260 (354)
...++|...+..++.
T Consensus 126 ~q~~~L~~kf~~~m~ 140 (180)
T 1s94_A 126 TQYSTISRKFVEVMS 140 (180)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667888888888764
No 114
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.98 E-value=31 Score=26.68 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQV 236 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~Qa 236 (354)
||+||+-|+...++..|.++-|+.|..|..-
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666555443
No 115
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.57 E-value=40 Score=24.53 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=25.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018564 219 RNAELEARAAQLSVEAQVWQAKARAQEATAASLQA 253 (354)
Q Consensus 219 rn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra 253 (354)
+..+||.++..|..|+..+......-...+..|+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999998776555555555543
No 116
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=51.40 E-value=1.1e+02 Score=25.65 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=23.9
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 018564 148 SLLSFLSDDLASPIKRQRDELDQFLQAQGEQ 178 (354)
Q Consensus 148 ~~~s~l~d~l~~~l~qQ~~EID~~i~~q~Er 178 (354)
.+.++.+|-|.-+|+|-+.+.|.+++.|.++
T Consensus 28 ~~~~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 28 IPFPVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999999776
No 117
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=48.97 E-value=91 Score=24.12 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLSVEAQVWQA 239 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~E~QaWq~ 239 (354)
+++.+.+.|..|..+|.+|..|...++.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777777777777666554
No 118
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=48.85 E-value=1.2e+02 Score=31.37 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAA 228 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlr 228 (354)
+-+..+||+.+.+-.+++.||+.
T Consensus 323 ~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 323 YERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444466666666666666544
No 119
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=47.87 E-value=49 Score=30.45 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=12.0
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 018564 213 VEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 213 Iera~rrn~ELEERlrql~~ 232 (354)
+++.+.||.+||++++.|..
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445566666777766653
No 120
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.23 E-value=2.3e+02 Score=28.22 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=41.7
Q ss_pred hhhhhhh------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018564 153 LSDDLAS------PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALL--GAAEESIARLLREKEAEVEKATRRNAELE 224 (354)
Q Consensus 153 l~d~l~~------~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll--~avE~~~~~rLReKEeEIera~rrn~ELE 224 (354)
+.+|+.. .|+.--++.++=|+..++.|+..|.+..+-|..... ..+-....+++...+.-=.....-+.+||
T Consensus 40 ~DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe 119 (390)
T 1deq_A 40 SDEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLR 119 (390)
T ss_pred chhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4666644 466666677777888888888888888776644433 33333333333332222223333344555
Q ss_pred HHHH
Q 018564 225 ARAA 228 (354)
Q Consensus 225 ERlr 228 (354)
.|+.
T Consensus 120 ~~i~ 123 (390)
T 1deq_A 120 SRIE 123 (390)
T ss_pred HHHH
Confidence 5544
No 121
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=46.99 E-value=6.1 Score=30.63 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=22.4
Q ss_pred cccccccccc---ccceEEeCCCCcccchhhHHh
Q 018564 304 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV 334 (354)
Q Consensus 304 ~~~C~IC~~~---~~~vlLLPCrHlclC~~C~~~ 334 (354)
+..|.+|.+. ++...-++|+|. +|..|...
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 3579999963 333334899998 99999775
No 122
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.94 E-value=2.5e+02 Score=27.97 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018564 161 IKRQRDELDQFLQAQGEQLRRALAE-------------KRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 227 (354)
Q Consensus 161 l~qQ~~EID~~i~~q~ErLR~~L~E-------------~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERl 227 (354)
+.+-..+|+.|++.-.+.||.-+.. --++|+.-|=..|...+. .||....-|+..+.+..-||.-|
T Consensus 79 ~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 79 YQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556777777666666654443 223455555566666666 77777777777777777777666
No 123
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=44.57 E-value=26 Score=23.32 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
||-+.|+.+|....+|.+|+.-+.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344567777777888888887666654
No 124
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.52 E-value=78 Score=23.32 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018564 220 NAELEARAAQLSVEAQV 236 (354)
Q Consensus 220 n~ELEERlrql~~E~Qa 236 (354)
..+||.++..|..|+..
T Consensus 32 ~~~Le~~v~~L~~eN~~ 48 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYH 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555544
No 125
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.42 E-value=28 Score=23.09 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
||.+.|+.+|....++.+|+.-+.+|.
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456677778888888888887666654
No 126
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=44.33 E-value=28 Score=23.27 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
||.+.|+.+|.+..+|.+||.-+.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566778888888888888887776654
No 127
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=43.93 E-value=32 Score=22.86 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
||.+.|+-+|.+..+|.+||.-+.+|.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 355667777777888888887666654
No 128
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.81 E-value=2.5e+02 Score=35.22 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.4
Q ss_pred hhhhHHHHHHHH
Q 018564 161 IKRQRDELDQFL 172 (354)
Q Consensus 161 l~qQ~~EID~~i 172 (354)
|.+-..|.|.++
T Consensus 1950 L~~k~~ea~~~l 1961 (3245)
T 3vkg_A 1950 LDVKNEQANQKL 1961 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444555443
No 129
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=43.58 E-value=80 Score=31.22 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018564 207 REKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAI 259 (354)
Q Consensus 207 ReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l 259 (354)
.+.++|++...++..+|++.++++..|...-...-...|..-..|++.|+.+.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566777777777777777777777776666555555566667777777754
No 130
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=42.50 E-value=17 Score=29.45 Aligned_cols=44 Identities=23% Similarity=0.618 Sum_probs=30.7
Q ss_pred cccccccccccccc----eEEeCCCCc--ccchhhHHh-----CCCCCCCccccc
Q 018564 303 SGPACKGCRKRVAS----VVLLPCRHL--CVCTECDRV-----VQACPLCFNVRD 346 (354)
Q Consensus 303 ~~~~C~IC~~~~~~----vlLLPCrHl--clC~~C~~~-----l~~CPvCR~~i~ 346 (354)
+...|.||.+..-. =+|+-|... .+|+.|..- -+.||-|.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45789999886221 256666543 379999755 369999998775
No 131
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.54 E-value=49 Score=23.81 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 203 ARLLREKEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 203 ~~rLReKEeEIera~rrn~ELEERlrql~~E 233 (354)
..|+|+...++..+..+|..|.+-++....|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888877766654
No 132
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.20 E-value=37 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
||-+.|+-++....+|.+|+..+.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445566667777777888887776664
No 133
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.75 E-value=1e+02 Score=32.07 Aligned_cols=72 Identities=10% Similarity=0.072 Sum_probs=39.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 159 SPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 159 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~ 232 (354)
.+|++-..+|+.|++.-.|.||..+.... .+...+..+-..+-+++-..+++|..-..+...|+-.|+.+..
T Consensus 74 EdlsKnsKdseqy~k~~~E~Lr~rq~q~~--dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~ 145 (562)
T 3ghg_A 74 FEYQKNNKDSHSLTTNIMEILRGDFSSAN--NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLV 145 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHTTSSHHHHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667888888888777776665554 3333444444344444444444544444444444444444433
No 134
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=40.23 E-value=33 Score=22.93 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
|+.+.|+-+|....+|.+|+.-+.+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556677777777888888887666654
No 135
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.98 E-value=63 Score=24.93 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKA 216 (354)
Q Consensus 204 ~rLReKEeEIera 216 (354)
++|.+||++|...
T Consensus 47 k~L~ekd~eI~~L 59 (72)
T 3nmd_A 47 LELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 136
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=39.97 E-value=2.2e+02 Score=28.86 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018564 168 LDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKE-------AEVEKATRRNAELEARAAQLSVEAQVWQAK 240 (354)
Q Consensus 168 ID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKE-------eEIera~rrn~ELEERlrql~~E~QaWq~~ 240 (354)
||.++.+..++ |..+.+.. ..++--.++...+++..+.++ ++++.+..+..+|.++++.+
T Consensus 69 ~~~~~~ld~~~-r~~~~~~~--~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l---------- 135 (501)
T 1wle_A 69 LPGIISTWQEL-RQLREQIR--SLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLL---------- 135 (501)
T ss_dssp HHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHH----------
Confidence 77777665332 22211111 122223444555554444432 34545555555555555443
Q ss_pred HHHhHHHHHHHHHHHHHHHHhc
Q 018564 241 ARAQEATAASLQAQLQQAIMSG 262 (354)
Q Consensus 241 A~~nEA~a~~Lra~LqQ~l~~~ 262 (354)
|+....+...|+..+...
T Consensus 136 ----~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 136 ----YPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp ----HHHHHHHHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHHHHHHHhC
Confidence 444455666666666543
No 137
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.21 E-value=1.2e+02 Score=23.63 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=17.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 018564 214 EKATRRNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 214 era~rrn~ELEERlrql~~E~QaWq 238 (354)
+.+..+|.+||++|+.+......-+
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344588999999998887555444
No 138
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=39.08 E-value=95 Score=27.23 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 198 AEESIARLLREKEAEVEKATRRNAELEARAAQL 230 (354)
Q Consensus 198 vE~~~~~rLReKEeEIera~rrn~ELEERlrql 230 (354)
+.+.+..+|.+.|..|+.+ +..|||||++.
T Consensus 6 ~~ee~~e~L~~~e~l~~el---~~tWeeKl~~t 35 (184)
T 4egx_A 6 FSEEAIERLKETEKIIAEL---NETWEEKLRRT 35 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH---HhHHHHHHHHH
Confidence 3445566777777666554 34677777653
No 139
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=38.58 E-value=1.6e+02 Score=24.06 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 018564 217 TRRNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 217 ~rrn~ELEERlrql~~E~QaWq 238 (354)
..+..||+..|++|.+|||...
T Consensus 64 ~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999987644
No 140
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=36.92 E-value=37 Score=24.47 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 018564 203 ARLLREKEAEVEKATRRNAELEA 225 (354)
Q Consensus 203 ~~rLReKEeEIera~rrn~ELEE 225 (354)
-+++++.|.++.++++++..|||
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 46788888888889888888886
No 141
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=36.82 E-value=1.7e+02 Score=23.67 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=6.0
Q ss_pred hhhhHHHHHHHH
Q 018564 161 IKRQRDELDQFL 172 (354)
Q Consensus 161 l~qQ~~EID~~i 172 (354)
|-+|..|+.-++
T Consensus 23 L~kQk~eL~~~l 34 (101)
T 1d7m_A 23 LIKQKDQLNSLL 34 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 142
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=35.85 E-value=50 Score=22.03 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
||-+.|+-+|.+..+|.+||.-+.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455667777777788888886666553
No 143
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.17 E-value=1.9e+02 Score=23.94 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018564 166 DELDQFLQAQGEQLRRALAEKRQ 188 (354)
Q Consensus 166 ~EID~~i~~q~ErLR~~L~E~rq 188 (354)
..||+ |+..+++||..|+....
T Consensus 15 ~~Ie~-Lkreie~lk~ele~l~~ 36 (120)
T 3i00_A 15 HLIER-LYREISGLKAQLENMKT 36 (120)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH
Confidence 35555 56666667766665543
No 144
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=34.76 E-value=17 Score=34.78 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=30.8
Q ss_pred ccccccccccccceEEeC----CCC-cccchhhHHh--C--CCCCCCcccc
Q 018564 304 GPACKGCRKRVASVVLLP----CRH-LCVCTECDRV--V--QACPLCFNVR 345 (354)
Q Consensus 304 ~~~C~IC~~~~~~vlLLP----CrH-lclC~~C~~~--l--~~CPvCR~~i 345 (354)
...|.+|...+.-.++.. =|+ +..|..|... + -.||.|....
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 468999999988766652 333 4579999755 2 4999999873
No 145
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.02 E-value=51 Score=22.01 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
||.+.|+-+|.+..+|.+|+.-+.+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 566677777888888888887666554
No 146
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=34.00 E-value=3e+02 Score=25.75 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=64.9
Q ss_pred hhhhhhHHHHHHHHHHH-----------HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 159 SPIKRQRDELDQFLQAQ-----------GEQLR---------RALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATR 218 (354)
Q Consensus 159 ~~l~qQ~~EID~~i~~q-----------~ErLR---------~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~r 218 (354)
-.+.+|..|+|-|-+-| +..+- ..+.+....|..+|+..+++ .-++|.+.-..
T Consensus 32 Kl~KKQqKEl~~LkKKH~Ke~~~lqK~~~~~~~~~s~~~~~~~kv~el~~~q~~el~~l~~~-------q~~eE~~~k~~ 104 (251)
T 1jad_A 32 KLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGEE-------YHDGIRRRKEQ 104 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 35677888888877743 33221 23456666666677666663 35677777778
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHH
Q 018564 219 RNAELEARAAQLSVEAQVWQAKAR--AQEATAASLQAQLQQ 257 (354)
Q Consensus 219 rn~ELEERlrql~~E~QaWq~~A~--~nEA~a~~Lra~LqQ 257 (354)
...++.++|+.|..|+|+=|-.+. .+|.-...|+..+.-
T Consensus 105 Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~k 145 (251)
T 1jad_A 105 HATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEA 145 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999886654 677777778877765
No 147
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.94 E-value=36 Score=25.85 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=24.9
Q ss_pred cccccccccccceE-EeCCCCcccchhhHHh------CCCCCCCcccccce
Q 018564 305 PACKGCRKRVASVV-LLPCRHLCVCTECDRV------VQACPLCFNVRDSS 348 (354)
Q Consensus 305 ~~C~IC~~~~~~vl-LLPCrHlclC~~C~~~------l~~CPvCR~~i~~s 348 (354)
..|.||++--..-. ..-|+|. +=..|..+ -.+||+|+......
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 45777766433211 1156655 44566653 25899999886643
No 148
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=33.53 E-value=1.6e+02 Score=22.55 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018564 213 VEKATRRNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 213 Iera~rrn~ELEERlrql~~E~QaWq 238 (354)
|+.+..+|.+||++|+.+......-+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444588999999998887554433
No 149
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=33.45 E-value=53 Score=21.94 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 205 LLREKEAEVEKATRRNAELEARAAQLS 231 (354)
Q Consensus 205 rLReKEeEIera~rrn~ELEERlrql~ 231 (354)
||.+.|+.+|....++.+|+.-+.+|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566677777777788888887666654
No 150
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=33.10 E-value=81 Score=22.77 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 172 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKAT 217 (354)
Q Consensus 172 i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~ 217 (354)
+..|..-++..|.++++..--.=|..+| .-|||.+.||++..
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le----~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQ----ENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHH----HHHHHHHHHHHHHh
Confidence 4556667777777777655444455555 44777777776654
No 151
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.88 E-value=2.5e+02 Score=24.48 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018564 210 EAEVEKATRRNAELEARAAQLSVEAQ 235 (354)
Q Consensus 210 EeEIera~rrn~ELEERlrql~~E~Q 235 (354)
..|+...+-.+..+|++++.|..|+.
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777888899999999999984
No 152
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=32.86 E-value=80 Score=24.16 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 171 FLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKA 216 (354)
Q Consensus 171 ~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera 216 (354)
=|..|..-++..|.++|+.---.=|..+| .-|||.++||++.
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe----~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQ----ENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHHHHHHHH
Confidence 44455566666677766654444455555 4477777777655
No 153
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.10 E-value=2.1e+02 Score=23.47 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--
Q 018564 155 DDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV-- 232 (354)
Q Consensus 155 d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~-- 232 (354)
.++-++++.+-.|+-.-+..+.+.++..-.|.. ..-+.+...+.||+.+...+..||..|+.+..
T Consensus 9 ~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~-------------elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 9 KDAEEWFFTKTEELNREVATNSELVQSGKSEIS-------------ELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp --------------------------------C-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018564 233 --EAQVWQAKARAQEATAASLQAQLQQAIMS 261 (354)
Q Consensus 233 --E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 261 (354)
+...++..-..-|+....+|..+.+.+..
T Consensus 76 ~~~l~~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 76 CMQLAQIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 154
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.09 E-value=1.8e+02 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
.++.++||.++.++...||. +.-++..|+.+|
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~----iqs~aK~LRnKA 80 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEK----MQNNSKLLRNKA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHH
Confidence 34566677666666555542 333444454443
No 155
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.17 E-value=1.4e+02 Score=23.59 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 217 TRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 217 ~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
+.+..+++.++..|..||..-+.....-+..+..|+.-|-+
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999998887776666666666655544
No 156
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.11 E-value=4.3e+02 Score=26.72 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=9.3
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 018564 213 VEKATRRNAELEARAAQL 230 (354)
Q Consensus 213 Iera~rrn~ELEERlrql 230 (354)
++.+.....+||+..+.+
T Consensus 141 ~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 141 DIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334455555666555444
No 157
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.47 E-value=1.8e+02 Score=22.04 Aligned_cols=10 Identities=40% Similarity=0.431 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 018564 186 KRQRHYRALL 195 (354)
Q Consensus 186 ~rqrh~r~ll 195 (354)
+|+.++|.--
T Consensus 11 kR~~qNR~AQ 20 (70)
T 1gd2_E 11 KRKAQNRAAQ 20 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 158
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=30.04 E-value=2.4e+02 Score=23.36 Aligned_cols=52 Identities=31% Similarity=0.319 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 207 REKEAEVEKATRRNAELEARAAQLSV----EAQVWQAKARAQEATAASLQAQLQQA 258 (354)
Q Consensus 207 ReKEeEIera~rrn~ELEERlrql~~----E~QaWq~~A~~nEA~a~~Lra~LqQ~ 258 (354)
|+..+++++......+||+.+..-.. +.+.-+..+...|+....|+...-|+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555888888888888887766655 34556677777777777766555553
No 159
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=29.55 E-value=95 Score=20.11 Aligned_cols=27 Identities=41% Similarity=0.446 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 208 EKEAEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 208 eKEeEIera~rrn~ELEERlrql~~E~ 234 (354)
+.|.|+..+...|-.||..+.||.-|+
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 345677777777888888888887664
No 160
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=29.31 E-value=91 Score=23.18 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 170 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKAT 217 (354)
Q Consensus 170 ~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~ 217 (354)
-.+..|..-++..|.++|+.---.=|..++ .-|||.+.||.+..
T Consensus 12 dpL~EQi~~I~~yI~qAk~~~R~DEV~~Le----~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLT----ENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHcCChHHHHHHH----HHHHHHHHHHHHHh
Confidence 367788888888998888765555555555 44777777776653
No 161
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.13 E-value=2.5e+02 Score=24.41 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=0.0
Q ss_pred hhHHHHH
Q 018564 163 RQRDELD 169 (354)
Q Consensus 163 qQ~~EID 169 (354)
+++++|+
T Consensus 35 ~~Rd~~E 41 (152)
T 3a7p_A 35 TDRNDKE 41 (152)
T ss_dssp -------
T ss_pred HHhhhHH
Confidence 3444443
No 162
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.96 E-value=1.9e+02 Score=22.03 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 182 ALAEKRQRHYRALLGAAEESI-----------ARLLREKEAEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 182 ~L~E~rqrh~r~ll~avE~~~-----------~~rLReKEeEIera~rrn~ELEERlrql~~E~ 234 (354)
.+|-+|+.+....+.++-..+ +..|+..-+=|..+..++.+|++.+.+|..|.
T Consensus 7 ~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 7 EMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665522 23344333444444444444444444444443
No 163
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.73 E-value=1.7e+02 Score=21.33 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018564 201 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 256 (354)
Q Consensus 201 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~Lq 256 (354)
.++.|-|+|.- .+..+|+.+++.|..|+.........-+..+..|+.-|.
T Consensus 12 ~AA~R~R~KKk------~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 12 TAATRYRQKKR------AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555432 235678888888888888888777777777777765443
No 164
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.54 E-value=20 Score=31.36 Aligned_cols=16 Identities=25% Similarity=0.602 Sum_probs=13.1
Q ss_pred CCCCCCcccccceEEE
Q 018564 336 QACPLCFNVRDSSVEV 351 (354)
Q Consensus 336 ~~CPvCR~~i~~sV~V 351 (354)
..||+|..++..+..+
T Consensus 154 ~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 154 EYCPVCGAPKEKFVVF 169 (170)
T ss_dssp SBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCHHHceec
Confidence 5999999998877654
No 165
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.44 E-value=1.1e+02 Score=21.84 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 211 AEVEKATRRNAELEARAAQLSVEAQV 236 (354)
Q Consensus 211 eEIera~rrn~ELEERlrql~~E~Qa 236 (354)
.|++.+...|.+|..++..|..+.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666655555554443
No 166
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=27.32 E-value=97 Score=26.50 Aligned_cols=9 Identities=11% Similarity=0.146 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 018564 249 ASLQAQLQQ 257 (354)
Q Consensus 249 ~~Lra~LqQ 257 (354)
..|...|..
T Consensus 63 ~~L~~~L~~ 71 (158)
T 2p4v_A 63 RYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 334444433
No 167
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.16 E-value=3.2e+02 Score=24.04 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=24.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHH
Q 018564 156 DLASPIKRQRDELDQFLQAQGE---QLRRALAEKRQ 188 (354)
Q Consensus 156 ~l~~~l~qQ~~EID~~i~~q~E---rLR~~L~E~rq 188 (354)
+=..+|++|-.|+...++.+.| |||+...|.+.
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k 41 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSK 41 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3457799999999999999866 78877777764
No 168
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.95 E-value=2.6e+02 Score=22.83 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=9.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 018564 212 EVEKATRRNAELEARAAQLSV 232 (354)
Q Consensus 212 EIera~rrn~ELEERlrql~~ 232 (354)
++..+..+..+||+-+.++..
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 334444444444444444443
No 169
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=26.81 E-value=1.2e+02 Score=27.72 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 166 DELDQFLQAQGEQLRRALAEKRQR 189 (354)
Q Consensus 166 ~EID~~i~~q~ErLR~~L~E~rqr 189 (354)
.|++.+ ....+.|...+.+.+.+
T Consensus 59 ~e~~~l-~~~l~~l~~e~~el~d~ 81 (213)
T 4ani_A 59 EELAAA-KAQIAELEAKLSEMEHR 81 (213)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHH
Confidence 466543 44556666665555543
No 170
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=26.58 E-value=85 Score=25.68 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 018564 214 EKATRRNAELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 214 era~rrn~ELEERlrql~~E~QaWq 238 (354)
++..+++..|.+++.+|..|...|+
T Consensus 92 ~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 92 EKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455667777788888888775
No 171
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=26.21 E-value=29 Score=24.85 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=9.9
Q ss_pred CCCCCcccccceEEE
Q 018564 337 ACPLCFNVRDSSVEV 351 (354)
Q Consensus 337 ~CPvCR~~i~~sV~V 351 (354)
.||+|..++..+..+
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 577777777666543
No 172
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.00 E-value=93 Score=23.62 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018564 199 EESIARLLREKEAEVEKA 216 (354)
Q Consensus 199 E~~~~~rLReKEeEIera 216 (354)
++.....|+.||+-|..+
T Consensus 13 ~e~~~~~i~~Kde~I~eL 30 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKEL 30 (67)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHH
Confidence 334444555555555333
No 173
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=25.97 E-value=1.7e+02 Score=32.54 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 206 LREKEAEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 206 LReKEeEIera~rrn~ELEERlrql~~E~ 234 (354)
+.+++++++++..+..+|+++++.+..+.
T Consensus 908 l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 908 YAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444433
No 174
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=25.67 E-value=27 Score=25.06 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=8.0
Q ss_pred CCCCCcccccceEE
Q 018564 337 ACPLCFNVRDSSVE 350 (354)
Q Consensus 337 ~CPvCR~~i~~sV~ 350 (354)
.||+|..++..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 56666666555543
No 175
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.53 E-value=19 Score=32.22 Aligned_cols=15 Identities=33% Similarity=1.028 Sum_probs=12.6
Q ss_pred CCCCCCcccccceEE
Q 018564 336 QACPLCFNVRDSSVE 350 (354)
Q Consensus 336 ~~CPvCR~~i~~sV~ 350 (354)
..||+|..++..+..
T Consensus 187 ~~CP~C~~~k~~F~~ 201 (202)
T 1yuz_A 187 EKCPICFRPKDTFTA 201 (202)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CCCCCCCCChHHhee
Confidence 699999999887764
No 176
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.00 E-value=26 Score=25.45 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=8.5
Q ss_pred CCCCCcccccceEE
Q 018564 337 ACPLCFNVRDSSVE 350 (354)
Q Consensus 337 ~CPvCR~~i~~sV~ 350 (354)
+||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (54)
T 4rxn_A 38 VCPLCGVGKDEFEE 51 (54)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHceE
Confidence 56666666655544
No 177
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.92 E-value=29 Score=25.13 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=10.7
Q ss_pred CCCCCcccccceEEE
Q 018564 337 ACPLCFNVRDSSVEV 351 (354)
Q Consensus 337 ~CPvCR~~i~~sV~V 351 (354)
.||+|..++..+..+
T Consensus 38 ~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCTTTCCCGGGEEEC
T ss_pred cCCCCCCCHHHceec
Confidence 688888777776654
No 178
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.44 E-value=2.2e+02 Score=22.54 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=28.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHH
Q 018564 211 AEVEKATRRNAELEARAAQLSVEAQV--------WQAKARAQEATAASLQAQLQQAIM 260 (354)
Q Consensus 211 eEIera~rrn~ELEERlrql~~E~Qa--------Wq~~A~~nEA~a~~Lra~LqQ~l~ 260 (354)
..|..+.+..-|.+|-|+|+..|++. ...+.+...+..+.|+..|..+..
T Consensus 38 ~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 38 QMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555667777777777754 223334444445556666666544
No 179
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.40 E-value=2.6e+02 Score=21.91 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHhH------HHHHH-HHHHHHHHHH
Q 018564 209 KEAEVEKATRRNAELEARAAQLSVEAQVW----QAKARAQE------ATAAS-LQAQLQQAIM 260 (354)
Q Consensus 209 KEeEIera~rrn~ELEERlrql~~E~QaW----q~~A~~nE------A~a~~-Lra~LqQ~l~ 260 (354)
|..-|..+.+..-|.+|-|+|+..|.+.- ..++.++. +.++. |+..|..+..
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445555555667777778888887776 34443332 33455 6666666543
No 180
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.38 E-value=7.5e+02 Score=27.35 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018564 221 AELEARAAQLSVEAQVWQ 238 (354)
Q Consensus 221 ~ELEERlrql~~E~QaWq 238 (354)
.+|++++..|..|++.-+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555554444
No 181
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.18 E-value=35 Score=26.82 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.4
Q ss_pred CCCCCcccccceEEE
Q 018564 337 ACPLCFNVRDSSVEV 351 (354)
Q Consensus 337 ~CPvCR~~i~~sV~V 351 (354)
.||+|..++..+..+
T Consensus 62 ~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 62 SCPDCGAAKSDFEMV 76 (81)
T ss_dssp CCTTTCCCGGGEEEE
T ss_pred cCCCCCCCHHHcEEc
Confidence 899999999988876
No 182
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.97 E-value=2.4e+02 Score=28.61 Aligned_cols=101 Identities=9% Similarity=0.156 Sum_probs=52.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH-
Q 018564 154 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRR-NAELEARAAQLS- 231 (354)
Q Consensus 154 ~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rr-n~ELEERlrql~- 231 (354)
+=+|+..|-+|...||.=|+.=...|. .| +..-.-...++.+|......+=+.+..- +.+.++ ..+|||.++-..
T Consensus 79 tCglad~L~kye~~V~~dl~~Le~~l~-~i-sn~Ts~a~~~v~~ik~s~~~~q~~~~~n-~~~~~~s~~mle~~~~~~~~ 155 (461)
T 3ghg_B 79 GCQLQEALLQQERPIRNSVDELNNNVE-AV-SQTSSSSFQYMYLLKDLWQKRQKQVKDN-ENVVNEYSSELEKHQLYIDE 155 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHTHHHHHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHTHHHH
T ss_pred cchHHHHHHhcccchhhHHHHHHHHHH-HH-HhhhHHHHHHHHHHHHHhccccCCCCcc-hhHHHHHHHHHHHHHHHHHh
Confidence 346788888888888877654322222 11 1223345556666666555554444443 444333 567777665544
Q ss_pred -----HHH--HHHHHHHHHhHHHHHHHHHHHHH
Q 018564 232 -----VEA--QVWQAKARAQEATAASLQAQLQQ 257 (354)
Q Consensus 232 -----~E~--QaWq~~A~~nEA~a~~Lra~LqQ 257 (354)
.|. +.-+.+-.++...+..|+..+.+
T Consensus 156 ~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~ 188 (461)
T 3ghg_B 156 TVNSNIPTNLRVLRSILENLRSKIQKLESDVSA 188 (461)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122 23344444445555555444444
No 183
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.27 E-value=2.2e+02 Score=29.21 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 018564 221 AELEARAAQLSVEAQVWQAKARAQE 245 (354)
Q Consensus 221 ~ELEERlrql~~E~QaWq~~A~~nE 245 (354)
.||++||+++..|...|+......|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQ 362 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444444333333
No 184
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.09 E-value=3.9e+02 Score=24.38 Aligned_cols=52 Identities=27% Similarity=0.389 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018564 170 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQL 230 (354)
Q Consensus 170 ~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql 230 (354)
.|-+.=.|+-|.+|.+.-. -+..|-..|| .|++||......|.+|.+-+.++
T Consensus 97 ~YWk~lAE~RR~AL~eaLe-EN~~Lh~~ie--------~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALK-ENEKLHKEIE--------QKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp THHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777888777654 2334444444 68999999988888887766443
No 185
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=22.87 E-value=31 Score=31.69 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 018564 162 KRQRDELDQFLQAQGE 177 (354)
Q Consensus 162 ~qQ~~EID~~i~~q~E 177 (354)
..|...|++++..|.+
T Consensus 44 ~e~~~li~~lv~a~~~ 59 (283)
T 3ipq_A 44 PEQLGMIEKLVAAQQQ 59 (283)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567789999998853
No 186
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.67 E-value=3.1e+02 Score=22.24 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 261 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 261 (354)
.-||++|++..-.++-.+.|.+-|+.-.+-.+.|+..-++-+..+..|+.+|+.+.-+
T Consensus 32 ~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 32 DSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999988888889998888888889999999999999999999999887644
No 187
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.62 E-value=2.3e+02 Score=20.72 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018564 204 RLLREKEAEVEKATRRNAELEARAAQLSVE 233 (354)
Q Consensus 204 ~rLReKEeEIera~rrn~ELEERlrql~~E 233 (354)
.++.+.+.+++.....|.+|+..+.+|..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777788888888777776654
No 188
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.57 E-value=2.6e+02 Score=21.32 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 018564 210 EAEVEKATRRNAELEARAAQLSVEA 234 (354)
Q Consensus 210 EeEIera~rrn~ELEERlrql~~E~ 234 (354)
+.++..+..+...||+-+.++..|-
T Consensus 25 ~~~~~~~q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666776666666543
No 189
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.21 E-value=1.3e+02 Score=23.20 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=24.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 217 TRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 252 (354)
Q Consensus 217 ~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 252 (354)
..+..+++.++..|..||..-+.....-+..+..|+
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888999999999887766554444444444
No 190
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=21.62 E-value=1.4e+02 Score=21.21 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018564 173 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEK 215 (354)
Q Consensus 173 ~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIer 215 (354)
..|..-++..|.++|+..--.=|++++ +-|||.+.|+++
T Consensus 7 ~EQ~~~I~~~I~qAk~~rRfdEV~~L~----~NL~EL~~E~~~ 45 (48)
T 3v1a_A 7 AQQIKNIHSFIHQAKAAGRMDEVRTLQ----ENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHH----HHHHHHHHHHHh
Confidence 445555666666666544444445554 447777777765
No 191
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.40 E-value=34 Score=24.01 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=10.5
Q ss_pred CCCCCcccccceEE
Q 018564 337 ACPLCFNVRDSSVE 350 (354)
Q Consensus 337 ~CPvCR~~i~~sV~ 350 (354)
.||+|..++..+..
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 78888888776653
No 192
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.21 E-value=91 Score=32.07 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018564 199 EESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 241 (354)
Q Consensus 199 E~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A 241 (354)
-.....||++.++|..++.....+-+|++..|..+.+.=+.-|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~ 379 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAK 379 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888777665554454444444444433333
No 193
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.69 E-value=2.5e+02 Score=20.33 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018564 219 RNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 255 (354)
Q Consensus 219 rn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 255 (354)
...+|+.++..|..|+..++.....-...+..|+..|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999988877655555555555443
No 194
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.60 E-value=35 Score=25.90 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=11.6
Q ss_pred CCCCCcccccceEEE
Q 018564 337 ACPLCFNVRDSSVEV 351 (354)
Q Consensus 337 ~CPvCR~~i~~sV~V 351 (354)
+||+|..++..+..+
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 688888888777654
No 195
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=20.38 E-value=1.2e+02 Score=25.76 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 018564 248 AASLQAQLQQ 257 (354)
Q Consensus 248 a~~Lra~LqQ 257 (354)
+..|...|..
T Consensus 62 i~~Le~~L~~ 71 (158)
T 1grj_A 62 IKDIEAKLSN 71 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3444444444
No 196
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=20.32 E-value=2.7e+02 Score=25.05 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018564 209 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEAT 247 (354)
Q Consensus 209 KEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~ 247 (354)
|.+=|+.+.++...|.+--..|..|.++|-.+-..-|+.
T Consensus 17 k~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~ 55 (190)
T 3thf_A 17 MDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAK 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334456677777777777777777777777665555554
No 197
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.19 E-value=2.4e+02 Score=20.08 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018564 220 NAELEARAAQLSVEAQVWQAKARAQEATAASLQ 252 (354)
Q Consensus 220 n~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 252 (354)
..+||+++..|..|+..-......-...+..|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888776665554444444444
Done!