Query 018565
Match_columns 354
No_of_seqs 202 out of 1978
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:04:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 7.8E-43 1.7E-47 308.7 24.4 333 14-354 3-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 1.1E-39 2.4E-44 297.9 24.7 289 29-341 2-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 2E-39 4.3E-44 286.6 20.8 235 91-331 3-241 (241)
4 COG2226 UbiE Methylase involve 99.8 1.8E-17 4E-22 142.8 18.6 152 188-346 50-228 (238)
5 TIGR00740 methyltransferase, p 99.8 7.2E-19 1.6E-23 155.1 9.5 158 188-352 52-237 (239)
6 PLN02233 ubiquinone biosynthes 99.8 7.1E-17 1.5E-21 143.8 19.5 161 187-353 71-260 (261)
7 PTZ00098 phosphoethanolamine N 99.8 5E-17 1.1E-21 144.9 17.2 155 177-344 42-204 (263)
8 PRK15451 tRNA cmo(5)U34 methyl 99.8 7.4E-18 1.6E-22 149.2 11.7 151 188-341 55-229 (247)
9 PF01209 Ubie_methyltran: ubiE 99.7 2E-18 4.3E-23 150.4 7.6 157 187-353 45-232 (233)
10 TIGR02752 MenG_heptapren 2-hep 99.7 1.9E-16 4.1E-21 139.1 18.4 167 178-354 36-231 (231)
11 PLN02244 tocopherol O-methyltr 99.7 6E-16 1.3E-20 143.1 17.6 151 188-344 117-280 (340)
12 PRK14103 trans-aconitate 2-met 99.7 8E-16 1.7E-20 137.0 16.6 155 177-339 19-181 (255)
13 PLN02490 MPBQ/MSBQ methyltrans 99.7 7.5E-16 1.6E-20 140.5 16.6 141 188-345 112-259 (340)
14 PRK00216 ubiE ubiquinone/menaq 99.7 7.1E-15 1.5E-19 129.6 19.3 167 178-354 42-238 (239)
15 PRK15068 tRNA mo(5)U34 methylt 99.7 2E-15 4.3E-20 138.2 16.1 144 189-343 122-275 (322)
16 PF02353 CMAS: Mycolic acid cy 99.7 8.4E-16 1.8E-20 136.9 13.1 160 176-344 51-219 (273)
17 PF06080 DUF938: Protein of un 99.7 2.6E-15 5.6E-20 125.6 14.5 158 192-354 28-204 (204)
18 TIGR00452 methyltransferase, p 99.7 3.8E-15 8.2E-20 134.9 16.5 153 178-343 112-274 (314)
19 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 5.5E-15 1.2E-19 128.9 17.1 161 187-354 37-223 (223)
20 COG2230 Cfa Cyclopropane fatty 99.7 2.3E-15 5.1E-20 132.1 14.3 157 176-344 61-225 (283)
21 PLN02336 phosphoethanolamine N 99.7 3.7E-15 8E-20 144.6 17.2 151 177-343 256-415 (475)
22 PF12847 Methyltransf_18: Meth 99.7 8.4E-16 1.8E-20 119.1 10.1 98 189-287 1-111 (112)
23 smart00828 PKS_MT Methyltransf 99.6 3.3E-15 7.1E-20 130.5 14.4 136 191-344 1-146 (224)
24 PRK11207 tellurite resistance 99.6 6.1E-15 1.3E-19 125.9 15.1 140 177-340 20-168 (197)
25 PRK11873 arsM arsenite S-adeno 99.6 9.1E-15 2E-19 131.5 16.4 145 187-342 75-230 (272)
26 KOG1540 Ubiquinone biosynthesi 99.6 2.9E-14 6.2E-19 120.9 16.8 144 188-339 99-278 (296)
27 PLN02396 hexaprenyldihydroxybe 99.6 3E-15 6.6E-20 136.1 11.2 145 189-343 131-290 (322)
28 PF13489 Methyltransf_23: Meth 99.6 2.5E-15 5.3E-20 124.1 9.7 136 188-339 21-160 (161)
29 PRK06922 hypothetical protein; 99.6 1.1E-14 2.4E-19 140.7 14.1 143 148-293 377-543 (677)
30 PRK08317 hypothetical protein; 99.6 5.4E-14 1.2E-18 123.9 16.0 156 179-343 11-177 (241)
31 PRK11036 putative S-adenosyl-L 99.6 1.7E-14 3.7E-19 128.4 12.0 152 189-347 44-212 (255)
32 TIGR00477 tehB tellurite resis 99.6 6.2E-14 1.3E-18 119.5 14.7 140 178-341 21-168 (195)
33 TIGR02021 BchM-ChlM magnesium 99.6 4.5E-14 9.8E-19 122.9 13.8 184 150-345 16-209 (219)
34 PRK01683 trans-aconitate 2-met 99.6 1.3E-13 2.7E-18 123.2 15.9 106 176-286 20-129 (258)
35 PF08241 Methyltransf_11: Meth 99.5 2.6E-14 5.6E-19 106.9 8.9 88 194-285 1-95 (95)
36 PF13847 Methyltransf_31: Meth 99.5 6.9E-14 1.5E-18 114.5 10.8 137 189-334 3-152 (152)
37 PRK06202 hypothetical protein; 99.5 4.4E-13 9.5E-18 117.7 16.2 148 188-345 59-225 (232)
38 COG4106 Tam Trans-aconitate me 99.5 2.4E-13 5.1E-18 112.6 12.4 164 176-353 19-202 (257)
39 PRK07580 Mg-protoporphyrin IX 99.5 2.6E-13 5.6E-18 119.0 13.5 147 188-345 62-217 (230)
40 PRK11705 cyclopropane fatty ac 99.5 4.3E-13 9.3E-18 125.5 15.6 154 177-344 157-314 (383)
41 PRK10258 biotin biosynthesis p 99.5 7.6E-13 1.7E-17 117.6 16.0 147 176-337 31-182 (251)
42 PF08242 Methyltransf_12: Meth 99.5 9.1E-15 2E-19 110.7 3.1 87 194-283 1-99 (99)
43 smart00138 MeTrc Methyltransfe 99.5 3.9E-13 8.4E-18 119.8 12.0 99 188-287 98-242 (264)
44 KOG1270 Methyltransferases [Co 99.5 6.2E-14 1.3E-18 119.7 6.3 142 190-341 90-248 (282)
45 TIGR02072 BioC biotin biosynth 99.5 5.7E-13 1.2E-17 117.4 12.8 136 189-341 34-175 (240)
46 PRK12335 tellurite resistance 99.5 9.9E-13 2.1E-17 119.0 14.6 131 189-341 120-258 (287)
47 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.1E-13 2.3E-18 117.5 7.7 143 189-343 59-216 (243)
48 PRK05785 hypothetical protein; 99.5 1.7E-12 3.7E-17 113.1 15.3 154 189-354 51-224 (226)
49 PLN03075 nicotianamine synthas 99.5 8.8E-13 1.9E-17 117.3 13.5 96 189-286 123-232 (296)
50 PLN02336 phosphoethanolamine N 99.5 8.4E-13 1.8E-17 128.1 14.6 143 177-339 27-179 (475)
51 TIGR03438 probable methyltrans 99.5 5.6E-13 1.2E-17 121.3 12.4 96 189-285 63-175 (301)
52 TIGR03840 TMPT_Se_Te thiopurin 99.5 2.9E-12 6.2E-17 110.3 16.1 132 188-342 33-187 (213)
53 PF13649 Methyltransf_25: Meth 99.5 2.5E-13 5.4E-18 103.2 8.2 88 193-281 1-101 (101)
54 PRK04266 fibrillarin; Provisio 99.5 2.5E-12 5.5E-17 111.5 15.4 140 187-353 70-224 (226)
55 TIGR00537 hemK_rel_arch HemK-r 99.4 3.2E-12 6.9E-17 107.6 15.1 133 189-354 19-177 (179)
56 KOG4300 Predicted methyltransf 99.4 1.1E-12 2.3E-17 107.9 11.2 155 188-351 75-243 (252)
57 TIGR03587 Pse_Me-ase pseudamin 99.4 1.4E-12 3.1E-17 111.6 11.7 102 188-292 42-147 (204)
58 PRK08287 cobalt-precorrin-6Y C 99.4 4.8E-12 1E-16 107.3 14.9 121 187-343 29-157 (187)
59 PF08003 Methyltransf_9: Prote 99.4 5E-12 1.1E-16 111.3 14.2 154 177-343 105-268 (315)
60 PF03848 TehB: Tellurite resis 99.4 3.6E-12 7.7E-17 106.7 11.4 139 178-340 21-167 (192)
61 PRK05134 bifunctional 3-demeth 99.4 7.3E-12 1.6E-16 110.1 13.4 149 188-342 47-205 (233)
62 PRK13255 thiopurine S-methyltr 99.4 2.4E-11 5.3E-16 105.0 15.9 132 188-342 36-190 (218)
63 PLN02585 magnesium protoporphy 99.4 4.4E-12 9.6E-17 115.1 11.3 144 189-344 144-301 (315)
64 PF05891 Methyltransf_PK: AdoM 99.4 7.2E-12 1.6E-16 105.4 11.6 138 189-343 55-202 (218)
65 PRK15001 SAM-dependent 23S rib 99.4 8.6E-12 1.9E-16 115.6 12.7 108 177-287 218-340 (378)
66 PF05401 NodS: Nodulation prot 99.3 3.7E-12 7.9E-17 105.3 8.4 132 187-343 41-180 (201)
67 TIGR00138 gidB 16S rRNA methyl 99.3 2.5E-11 5.4E-16 102.0 13.1 90 190-286 43-141 (181)
68 KOG2361 Predicted methyltransf 99.3 9.6E-12 2.1E-16 105.0 9.8 145 191-340 73-235 (264)
69 PRK09489 rsmC 16S ribosomal RN 99.3 2.4E-11 5.3E-16 111.9 12.6 108 178-288 187-304 (342)
70 PRK00107 gidB 16S rRNA methylt 99.3 2.6E-11 5.6E-16 102.1 11.6 92 189-287 45-145 (187)
71 PF05175 MTS: Methyltransferas 99.3 1.2E-11 2.6E-16 103.1 9.5 98 189-287 31-140 (170)
72 TIGR02081 metW methionine bios 99.3 4.3E-11 9.4E-16 102.1 12.9 143 189-344 13-169 (194)
73 TIGR02469 CbiT precorrin-6Y C5 99.3 3.8E-11 8.2E-16 94.4 11.2 94 187-286 17-121 (124)
74 TIGR01983 UbiG ubiquinone bios 99.3 4.3E-11 9.3E-16 104.5 11.2 142 189-342 45-203 (224)
75 PTZ00146 fibrillarin; Provisio 99.2 3.1E-10 6.7E-15 100.8 15.9 140 187-352 130-284 (293)
76 COG2813 RsmC 16S RNA G1207 met 99.2 1.1E-10 2.4E-15 103.0 12.0 110 176-288 147-267 (300)
77 TIGR03534 RF_mod_PrmC protein- 99.2 4.7E-10 1E-14 99.6 14.9 123 189-343 87-242 (251)
78 PRK00121 trmB tRNA (guanine-N( 99.2 6.3E-11 1.4E-15 101.6 8.9 98 189-287 40-156 (202)
79 PRK09328 N5-glutamine S-adenos 99.2 7E-10 1.5E-14 100.0 16.0 135 187-353 106-274 (275)
80 PRK13256 thiopurine S-methyltr 99.2 9.4E-10 2E-14 94.8 15.2 101 188-291 42-167 (226)
81 PRK00517 prmA ribosomal protei 99.2 7.2E-10 1.6E-14 98.3 14.9 122 188-351 118-247 (250)
82 PF05724 TPMT: Thiopurine S-me 99.2 3.9E-10 8.4E-15 97.3 12.4 133 187-342 35-190 (218)
83 PF12147 Methyltransf_20: Puta 99.2 1.8E-09 3.8E-14 94.3 15.8 158 188-354 134-311 (311)
84 PRK13944 protein-L-isoaspartat 99.2 3.2E-10 6.8E-15 97.5 11.2 97 179-286 64-172 (205)
85 PRK14968 putative methyltransf 99.1 2.9E-09 6.3E-14 90.2 15.6 123 188-343 22-174 (188)
86 COG4123 Predicted O-methyltran 99.1 1.2E-09 2.7E-14 94.5 13.3 136 187-354 42-212 (248)
87 PF07021 MetW: Methionine bios 99.1 8.4E-10 1.8E-14 91.3 11.4 148 187-346 11-171 (193)
88 PLN02232 ubiquinone biosynthes 99.1 5E-10 1.1E-14 92.3 10.1 130 217-352 1-158 (160)
89 TIGR00091 tRNA (guanine-N(7)-) 99.1 4.4E-10 9.6E-15 95.8 9.9 97 189-287 16-132 (194)
90 PRK14966 unknown domain/N5-glu 99.1 3.5E-09 7.6E-14 98.6 16.0 133 189-353 251-417 (423)
91 PRK13942 protein-L-isoaspartat 99.1 9.2E-10 2E-14 95.1 11.4 99 177-286 66-175 (212)
92 PRK11088 rrmA 23S rRNA methylt 99.1 6.4E-10 1.4E-14 99.9 9.9 90 189-288 85-182 (272)
93 PHA03411 putative methyltransf 99.1 2.5E-09 5.3E-14 94.0 12.8 124 189-337 64-209 (279)
94 PRK11188 rrmJ 23S rRNA methylt 99.1 2.8E-09 6E-14 91.8 12.9 96 187-287 49-165 (209)
95 COG2242 CobL Precorrin-6B meth 99.1 1.7E-09 3.8E-14 88.8 11.0 94 187-287 32-135 (187)
96 TIGR00080 pimt protein-L-isoas 99.1 1.7E-09 3.6E-14 93.8 11.5 98 178-286 68-176 (215)
97 TIGR03533 L3_gln_methyl protei 99.1 1.4E-09 3.1E-14 98.0 11.2 96 189-285 121-249 (284)
98 PRK00377 cbiT cobalt-precorrin 99.1 3E-09 6.5E-14 91.0 12.7 93 187-285 38-143 (198)
99 PRK11805 N5-glutamine S-adenos 99.0 1.8E-09 3.9E-14 98.3 10.5 94 191-285 135-261 (307)
100 PRK14967 putative methyltransf 99.0 5.3E-09 1.2E-13 91.2 13.0 101 187-289 34-161 (223)
101 TIGR00536 hemK_fam HemK family 99.0 3.1E-09 6.8E-14 96.0 11.9 94 191-285 116-242 (284)
102 PRK04457 spermidine synthase; 99.0 1.3E-09 2.7E-14 97.1 9.2 98 188-286 65-176 (262)
103 PF13659 Methyltransf_26: Meth 99.0 9.8E-10 2.1E-14 85.6 7.5 95 191-287 2-115 (117)
104 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.1E-09 6.7E-14 98.3 11.7 99 188-288 121-236 (390)
105 PRK07402 precorrin-6B methylas 99.0 4.6E-09 9.9E-14 89.7 12.0 101 179-288 32-143 (196)
106 cd02440 AdoMet_MTases S-adenos 99.0 3.6E-09 7.8E-14 79.6 9.7 92 192-286 1-103 (107)
107 PRK01544 bifunctional N5-gluta 99.0 1.6E-08 3.5E-13 98.2 15.2 130 190-351 139-303 (506)
108 KOG2899 Predicted methyltransf 99.0 4.8E-09 1E-13 88.8 9.8 153 177-339 46-254 (288)
109 KOG1271 Methyltransferases [Ge 98.9 6.6E-09 1.4E-13 84.1 9.9 124 191-346 69-209 (227)
110 PF06325 PrmA: Ribosomal prote 98.9 2.1E-08 4.5E-13 90.1 13.9 124 188-351 160-292 (295)
111 COG2264 PrmA Ribosomal protein 98.9 2.3E-08 5E-13 89.0 13.2 126 188-350 161-296 (300)
112 PF05148 Methyltransf_8: Hypot 98.9 3E-08 6.4E-13 82.9 13.0 175 126-352 14-195 (219)
113 PRK10611 chemotaxis methyltran 98.9 2.7E-08 5.9E-13 89.0 13.6 97 189-286 115-261 (287)
114 PF01739 CheR: CheR methyltran 98.9 4.3E-09 9.2E-14 89.1 7.9 97 189-286 31-174 (196)
115 PRK00312 pcm protein-L-isoaspa 98.9 1.5E-08 3.2E-13 87.7 11.2 97 178-287 69-175 (212)
116 COG4976 Predicted methyltransf 98.9 3E-09 6.4E-14 89.3 6.4 146 176-343 114-266 (287)
117 TIGR00406 prmA ribosomal prote 98.9 1.3E-08 2.9E-13 92.1 11.2 93 189-288 159-260 (288)
118 COG1352 CheR Methylase of chem 98.9 4.8E-08 1E-12 86.3 14.0 97 189-286 96-240 (268)
119 PRK00811 spermidine synthase; 98.9 1.5E-08 3.3E-13 91.3 9.9 98 188-286 75-190 (283)
120 TIGR00438 rrmJ cell division p 98.9 2.2E-08 4.7E-13 84.9 10.3 95 187-286 30-145 (188)
121 TIGR03704 PrmC_rel_meth putati 98.8 2.4E-08 5.3E-13 88.4 10.5 96 190-286 87-215 (251)
122 TIGR01177 conserved hypothetic 98.8 5E-08 1.1E-12 90.1 12.1 98 187-287 180-294 (329)
123 COG2890 HemK Methylase of poly 98.8 1.7E-07 3.7E-12 84.1 14.8 128 192-351 113-273 (280)
124 PF04672 Methyltransf_19: S-ad 98.8 2.4E-08 5.1E-13 87.3 8.9 141 189-339 68-233 (267)
125 COG2519 GCD14 tRNA(1-methylade 98.8 1.1E-07 2.4E-12 81.8 11.6 105 176-290 83-198 (256)
126 COG2518 Pcm Protein-L-isoaspar 98.8 9.9E-08 2.1E-12 80.3 11.0 98 178-288 63-170 (209)
127 PRK13943 protein-L-isoaspartat 98.8 5.5E-08 1.2E-12 88.7 10.2 92 187-287 78-180 (322)
128 PRK01581 speE spermidine synth 98.7 9.2E-08 2E-12 87.4 10.7 98 188-286 149-267 (374)
129 smart00650 rADc Ribosomal RNA 98.7 7.7E-08 1.7E-12 80.1 9.4 88 178-270 4-99 (169)
130 PLN02366 spermidine synthase 98.7 8.2E-08 1.8E-12 87.1 10.1 97 188-285 90-204 (308)
131 TIGR03439 methyl_EasF probable 98.7 1.6E-07 3.4E-12 85.4 11.8 108 177-289 68-200 (319)
132 PF01135 PCMT: Protein-L-isoas 98.7 5.6E-08 1.2E-12 83.2 8.4 100 177-287 62-172 (209)
133 PRK03612 spermidine synthase; 98.7 1.3E-07 2.7E-12 92.5 11.9 97 188-286 296-414 (521)
134 TIGR00417 speE spermidine synt 98.7 7.9E-08 1.7E-12 86.2 9.6 97 189-286 72-185 (270)
135 KOG3045 Predicted RNA methylas 98.7 6.3E-07 1.4E-11 76.8 13.7 156 150-351 138-300 (325)
136 PLN02781 Probable caffeoyl-CoA 98.7 1.8E-07 3.9E-12 82.0 10.4 96 187-288 66-179 (234)
137 PRK10901 16S rRNA methyltransf 98.6 2.9E-07 6.2E-12 88.0 12.2 108 179-289 236-374 (427)
138 PLN02672 methionine S-methyltr 98.6 3.1E-07 6.6E-12 95.2 13.1 123 190-344 119-305 (1082)
139 PF05219 DREV: DREV methyltran 98.6 5.1E-07 1.1E-11 78.2 12.2 146 189-344 94-242 (265)
140 PHA03412 putative methyltransf 98.6 1.8E-07 3.9E-12 80.5 9.3 93 190-284 50-159 (241)
141 PF02390 Methyltransf_4: Putat 98.6 1.7E-07 3.8E-12 79.6 9.2 96 191-288 19-134 (195)
142 PF08704 GCD14: tRNA methyltra 98.6 4.4E-07 9.5E-12 79.4 11.8 103 177-289 30-148 (247)
143 KOG3010 Methyltransferase [Gen 98.6 1.6E-07 3.4E-12 79.8 8.4 91 190-285 34-135 (261)
144 KOG1541 Predicted protein carb 98.6 1E-07 2.2E-12 79.8 7.1 93 189-285 50-158 (270)
145 PF08100 Dimerisation: Dimeris 98.6 3.1E-08 6.6E-13 63.9 2.9 46 32-77 1-51 (51)
146 PF03291 Pox_MCEL: mRNA cappin 98.6 2.7E-07 5.9E-12 84.5 9.5 97 189-287 62-186 (331)
147 PRK14902 16S rRNA methyltransf 98.6 5.2E-07 1.1E-11 86.8 11.8 102 187-289 248-381 (444)
148 PRK14904 16S rRNA methyltransf 98.6 5.7E-07 1.2E-11 86.5 11.8 104 187-291 248-381 (445)
149 PF10294 Methyltransf_16: Puta 98.6 3.7E-07 8E-12 76.2 9.0 101 187-290 43-159 (173)
150 TIGR00563 rsmB ribosomal RNA s 98.6 5.4E-07 1.2E-11 86.2 11.1 104 187-291 236-372 (426)
151 PF11968 DUF3321: Putative met 98.5 1.8E-06 3.9E-11 72.8 12.4 123 189-346 51-185 (219)
152 PRK11727 23S rRNA mA1618 methy 98.5 1E-06 2.2E-11 80.2 10.8 144 189-343 114-293 (321)
153 PRK14901 16S rRNA methyltransf 98.5 9.7E-07 2.1E-11 84.6 11.2 103 187-290 250-387 (434)
154 PF08123 DOT1: Histone methyla 98.5 6.2E-07 1.3E-11 76.5 8.3 108 178-291 33-162 (205)
155 TIGR00446 nop2p NOL1/NOP2/sun 98.5 1.4E-06 3.1E-11 77.8 10.9 103 187-290 69-202 (264)
156 PRK13168 rumA 23S rRNA m(5)U19 98.5 1.9E-06 4.1E-11 82.9 12.4 99 177-286 287-399 (443)
157 PLN02476 O-methyltransferase 98.5 4.5E-06 9.7E-11 74.3 13.5 97 187-290 116-230 (278)
158 PRK14903 16S rRNA methyltransf 98.4 1.9E-06 4.1E-11 82.3 11.5 103 187-290 235-369 (431)
159 PRK14896 ksgA 16S ribosomal RN 98.4 1.6E-06 3.4E-11 77.3 10.1 82 177-263 19-106 (258)
160 PF01596 Methyltransf_3: O-met 98.4 6.4E-07 1.4E-11 76.5 6.9 95 188-289 44-156 (205)
161 TIGR00755 ksgA dimethyladenosi 98.4 1.6E-06 3.5E-11 77.0 9.8 83 177-263 19-109 (253)
162 PRK00274 ksgA 16S ribosomal RN 98.4 1.2E-06 2.7E-11 78.6 8.7 82 177-263 32-120 (272)
163 COG3963 Phospholipid N-methylt 98.4 4.6E-06 9.9E-11 67.0 10.7 113 174-289 35-158 (194)
164 COG4122 Predicted O-methyltran 98.4 2E-06 4.4E-11 73.5 9.1 99 187-292 57-170 (219)
165 KOG1500 Protein arginine N-met 98.4 4.4E-06 9.5E-11 74.2 11.3 95 189-285 177-280 (517)
166 KOG1661 Protein-L-isoaspartate 98.4 8.1E-07 1.8E-11 73.9 6.1 96 181-285 74-191 (237)
167 PF05185 PRMT5: PRMT5 arginine 98.3 3E-06 6.5E-11 80.9 10.3 130 149-284 151-294 (448)
168 COG0220 Predicted S-adenosylme 98.3 2.1E-06 4.6E-11 74.2 8.5 95 191-287 50-164 (227)
169 PRK04148 hypothetical protein; 98.3 6.8E-06 1.5E-10 64.6 9.6 98 178-288 7-110 (134)
170 PLN02823 spermine synthase 98.3 4.7E-06 1E-10 76.6 9.1 95 189-285 103-218 (336)
171 PTZ00338 dimethyladenosine tra 98.2 5.1E-06 1.1E-10 75.1 9.1 88 177-269 26-122 (294)
172 KOG1975 mRNA cap methyltransfe 98.2 5E-06 1.1E-10 73.6 8.4 96 188-285 116-235 (389)
173 PRK10909 rsmD 16S rRNA m(2)G96 98.2 5.3E-06 1.2E-10 70.6 7.6 95 189-289 53-160 (199)
174 COG0421 SpeE Spermidine syntha 98.2 1.2E-05 2.7E-10 71.8 9.9 96 189-286 76-189 (282)
175 KOG1499 Protein arginine N-met 98.2 1E-05 2.3E-10 72.8 9.3 94 189-284 60-164 (346)
176 PLN02589 caffeoyl-CoA O-methyl 98.1 1E-05 2.3E-10 71.0 8.5 97 187-290 77-192 (247)
177 COG2263 Predicted RNA methylas 98.1 1.1E-05 2.4E-10 66.4 8.0 71 189-260 45-121 (198)
178 PRK00536 speE spermidine synth 98.1 1.7E-05 3.8E-10 70.0 9.7 88 188-286 71-170 (262)
179 PRK15128 23S rRNA m(5)C1962 me 98.1 1.9E-05 4E-10 74.5 9.9 97 189-287 220-339 (396)
180 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.1 3.6E-06 7.8E-11 73.9 4.7 91 236-342 138-239 (256)
181 PRK11783 rlmL 23S rRNA m(2)G24 98.1 1.4E-05 3E-10 81.1 9.4 96 189-286 538-655 (702)
182 PF01564 Spermine_synth: Sperm 98.1 1.1E-05 2.4E-10 71.2 7.3 99 188-287 75-191 (246)
183 PF09243 Rsm22: Mitochondrial 98.1 2.3E-05 5E-10 70.3 9.4 100 189-291 33-143 (274)
184 KOG2904 Predicted methyltransf 98.0 6.1E-05 1.3E-09 65.5 10.5 96 189-285 148-283 (328)
185 KOG1331 Predicted methyltransf 98.0 1.3E-05 2.8E-10 70.2 6.3 95 189-288 45-144 (293)
186 PRK01544 bifunctional N5-gluta 98.0 2.5E-05 5.5E-10 76.1 8.6 97 189-287 347-462 (506)
187 TIGR00478 tly hemolysin TlyA f 98.0 0.00012 2.7E-09 63.5 11.7 143 178-344 65-219 (228)
188 PF03141 Methyltransf_29: Puta 98.0 5E-06 1.1E-10 78.3 3.2 98 188-290 116-222 (506)
189 PRK03522 rumB 23S rRNA methylu 97.9 3.2E-05 6.8E-10 71.1 8.2 64 189-254 173-247 (315)
190 COG4301 Uncharacterized conser 97.9 7.8E-05 1.7E-09 63.7 9.6 101 188-289 77-196 (321)
191 KOG0820 Ribosomal RNA adenine 97.9 4.4E-05 9.5E-10 66.3 7.8 75 176-254 47-130 (315)
192 COG2521 Predicted archaeal met 97.9 0.00016 3.5E-09 61.4 10.5 131 188-343 133-278 (287)
193 KOG3191 Predicted N6-DNA-methy 97.9 0.00097 2.1E-08 54.6 14.5 68 189-256 43-119 (209)
194 PF02527 GidB: rRNA small subu 97.8 5.3E-05 1.2E-09 63.5 7.0 88 192-286 51-147 (184)
195 TIGR00095 RNA methyltransferas 97.8 9E-05 2E-09 62.7 8.4 96 189-290 49-161 (189)
196 COG0030 KsgA Dimethyladenosine 97.8 0.00013 2.9E-09 64.0 9.4 92 176-271 19-118 (259)
197 PF04816 DUF633: Family of unk 97.8 0.00032 6.9E-09 59.9 11.0 124 193-353 1-138 (205)
198 TIGR00479 rumA 23S rRNA (uraci 97.8 5.5E-05 1.2E-09 72.7 6.8 91 187-285 290-394 (431)
199 PF07942 N2227: N2227-like pro 97.8 0.00096 2.1E-08 59.1 13.9 135 188-342 55-242 (270)
200 PRK00050 16S rRNA m(4)C1402 me 97.8 6.4E-05 1.4E-09 67.6 6.6 77 176-254 8-97 (296)
201 TIGR02085 meth_trns_rumB 23S r 97.7 9.8E-05 2.1E-09 69.4 8.1 89 189-285 233-332 (374)
202 PF09339 HTH_IclR: IclR helix- 97.7 2.3E-05 5E-10 51.3 2.0 47 40-86 6-52 (52)
203 KOG2940 Predicted methyltransf 97.6 6.5E-05 1.4E-09 63.5 4.4 141 188-340 71-225 (325)
204 COG4262 Predicted spermidine s 97.5 0.0005 1.1E-08 62.2 9.0 93 188-287 288-407 (508)
205 COG0293 FtsJ 23S rRNA methylas 97.5 0.0011 2.3E-08 56.0 10.2 107 176-288 33-160 (205)
206 PRK11760 putative 23S rRNA C24 97.5 0.0019 4.2E-08 58.7 11.9 100 187-295 209-312 (357)
207 PF01728 FtsJ: FtsJ-like methy 97.5 0.00023 5.1E-09 59.8 5.7 105 177-286 10-138 (181)
208 COG0357 GidB Predicted S-adeno 97.4 0.00044 9.5E-09 59.1 7.0 119 190-343 68-196 (215)
209 PRK04338 N(2),N(2)-dimethylgua 97.4 0.00042 9.1E-09 65.1 7.4 90 190-286 58-157 (382)
210 KOG3115 Methyltransferase-like 97.4 0.00026 5.6E-09 58.8 5.2 99 190-289 61-185 (249)
211 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00063 1.4E-08 60.7 8.1 95 176-278 19-123 (262)
212 PF12840 HTH_20: Helix-turn-he 97.4 0.00012 2.7E-09 49.6 2.5 55 31-86 4-58 (61)
213 KOG3987 Uncharacterized conser 97.4 9.9E-05 2.1E-09 61.4 2.3 148 188-344 111-262 (288)
214 PF02475 Met_10: Met-10+ like- 97.4 0.00031 6.7E-09 59.7 5.2 89 188-283 100-198 (200)
215 COG4076 Predicted RNA methylas 97.3 0.00076 1.7E-08 55.4 7.0 94 191-287 34-135 (252)
216 PF07091 FmrO: Ribosomal RNA m 97.3 0.0022 4.7E-08 55.8 10.0 102 187-291 103-212 (251)
217 KOG2798 Putative trehalase [Ca 97.3 0.0034 7.4E-08 55.9 11.0 151 176-343 135-338 (369)
218 smart00346 HTH_ICLR helix_turn 97.3 0.00036 7.9E-09 51.4 4.2 57 40-99 8-64 (91)
219 smart00550 Zalpha Z-DNA-bindin 97.3 0.00059 1.3E-08 47.3 4.9 60 37-98 6-66 (68)
220 COG4798 Predicted methyltransf 97.3 0.0033 7.1E-08 52.1 9.8 140 187-343 46-206 (238)
221 PF03059 NAS: Nicotianamine sy 97.3 0.0017 3.7E-08 57.7 8.9 95 189-285 120-228 (276)
222 KOG1709 Guanidinoacetate methy 97.2 0.0023 4.9E-08 53.9 8.8 99 188-289 100-208 (271)
223 PF13679 Methyltransf_32: Meth 97.2 0.001 2.2E-08 53.5 6.4 84 187-274 23-122 (141)
224 PRK11933 yebU rRNA (cytosine-C 97.2 0.0041 9E-08 59.9 11.2 101 187-288 111-243 (470)
225 PRK10141 DNA-binding transcrip 97.2 0.00052 1.1E-08 52.9 4.0 66 28-98 7-75 (117)
226 PF01022 HTH_5: Bacterial regu 97.1 0.00034 7.4E-09 44.6 2.5 44 39-84 4-47 (47)
227 PF01269 Fibrillarin: Fibrilla 97.1 0.023 5E-07 48.5 14.0 140 187-352 71-225 (229)
228 COG0500 SmtA SAM-dependent met 97.1 0.0046 1E-07 49.8 9.8 95 193-292 52-160 (257)
229 COG1889 NOP1 Fibrillarin-like 97.1 0.046 9.9E-07 45.9 15.2 141 187-353 74-228 (231)
230 TIGR00027 mthyl_TIGR00027 meth 97.1 0.0073 1.6E-07 53.8 11.5 145 189-340 81-248 (260)
231 PF01170 UPF0020: Putative RNA 97.1 0.0041 8.8E-08 52.1 9.2 92 187-278 26-143 (179)
232 KOG3420 Predicted RNA methylas 97.0 0.0012 2.6E-08 52.0 5.1 69 189-258 48-125 (185)
233 TIGR02143 trmA_only tRNA (urac 97.0 0.0006 1.3E-08 63.6 4.1 51 191-243 199-256 (353)
234 COG1414 IclR Transcriptional r 97.0 0.00069 1.5E-08 59.8 4.2 58 40-100 7-64 (246)
235 PF09445 Methyltransf_15: RNA 97.0 0.0006 1.3E-08 55.7 3.3 62 192-255 2-77 (163)
236 COG5459 Predicted rRNA methyla 97.0 0.00053 1.1E-08 61.7 3.0 99 190-289 114-227 (484)
237 COG3897 Predicted methyltransf 97.0 0.0059 1.3E-07 50.8 8.6 101 188-292 78-184 (218)
238 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0036 7.9E-08 57.4 8.3 100 187-287 44-183 (311)
239 KOG2915 tRNA(1-methyladenosine 96.9 0.0064 1.4E-07 53.1 8.8 104 176-288 94-211 (314)
240 TIGR02431 pcaR_pcaU beta-ketoa 96.9 0.00098 2.1E-08 59.0 4.1 56 40-100 12-67 (248)
241 KOG4589 Cell division protein 96.9 0.0072 1.6E-07 49.8 8.5 94 187-285 67-182 (232)
242 PRK05031 tRNA (uracil-5-)-meth 96.9 0.00093 2E-08 62.5 3.8 51 191-243 208-265 (362)
243 COG1189 Predicted rRNA methyla 96.9 0.03 6.5E-07 48.2 12.5 151 177-344 68-226 (245)
244 KOG1269 SAM-dependent methyltr 96.8 0.0014 2.9E-08 60.9 4.5 103 188-294 109-222 (364)
245 PRK11569 transcriptional repre 96.8 0.0014 3E-08 59.0 4.4 58 40-100 31-88 (274)
246 PRK10163 DNA-binding transcrip 96.8 0.0014 3.1E-08 58.8 4.5 58 40-100 28-85 (271)
247 COG3315 O-Methyltransferase in 96.8 0.0085 1.8E-07 54.3 9.1 147 190-341 93-263 (297)
248 PF13463 HTH_27: Winged helix 96.8 0.0015 3.3E-08 45.1 3.3 60 41-100 7-68 (68)
249 TIGR02987 met_A_Alw26 type II 96.7 0.0066 1.4E-07 59.9 8.7 67 189-255 31-120 (524)
250 COG2384 Predicted SAM-dependen 96.7 0.064 1.4E-06 45.7 13.2 120 189-345 16-146 (226)
251 smart00419 HTH_CRP helix_turn_ 96.7 0.0027 5.9E-08 40.3 3.8 42 51-97 7-48 (48)
252 KOG3201 Uncharacterized conser 96.7 0.00069 1.5E-08 54.3 1.2 95 190-287 30-140 (201)
253 PF14947 HTH_45: Winged helix- 96.7 0.0016 3.6E-08 46.3 2.9 55 42-103 11-65 (77)
254 PF01978 TrmB: Sugar-specific 96.6 0.00095 2.1E-08 46.3 1.5 48 38-86 9-56 (68)
255 PF13412 HTH_24: Winged helix- 96.6 0.0022 4.7E-08 41.0 3.0 45 38-83 4-48 (48)
256 PRK15090 DNA-binding transcrip 96.6 0.0022 4.9E-08 57.1 4.2 57 40-100 17-73 (257)
257 PF13578 Methyltransf_24: Meth 96.6 0.0013 2.9E-08 49.9 2.3 90 194-287 1-105 (106)
258 TIGR01444 fkbM_fam methyltrans 96.6 0.0041 8.9E-08 49.8 5.3 52 192-243 1-59 (143)
259 PRK09834 DNA-binding transcrip 96.6 0.0024 5.2E-08 57.1 4.3 59 40-101 14-72 (263)
260 PRK11783 rlmL 23S rRNA m(2)G24 96.6 0.02 4.4E-07 58.4 11.3 111 176-288 178-348 (702)
261 cd00092 HTH_CRP helix_turn_hel 96.6 0.0086 1.9E-07 41.0 6.1 44 51-98 24-67 (67)
262 PF02082 Rrf2: Transcriptional 96.5 0.0034 7.3E-08 45.4 3.9 48 51-100 24-71 (83)
263 PF11312 DUF3115: Protein of u 96.5 0.0053 1.1E-07 55.1 5.9 99 189-288 86-243 (315)
264 PF03602 Cons_hypoth95: Conser 96.5 0.0049 1.1E-07 51.8 5.0 98 189-291 42-156 (183)
265 KOG1663 O-methyltransferase [S 96.5 0.034 7.4E-07 47.6 10.0 100 187-292 71-188 (237)
266 PHA00738 putative HTH transcri 96.4 0.0041 8.8E-08 46.4 3.9 59 37-100 12-73 (108)
267 TIGR00006 S-adenosyl-methyltra 96.4 0.012 2.6E-07 53.3 7.5 77 176-254 9-99 (305)
268 PF13601 HTH_34: Winged helix 96.4 0.0017 3.7E-08 46.5 1.5 63 38-101 1-66 (80)
269 PF09012 FeoC: FeoC like trans 96.2 0.0043 9.3E-08 43.1 2.6 44 42-86 5-48 (69)
270 COG4742 Predicted transcriptio 96.1 0.008 1.7E-07 52.7 4.7 67 32-105 8-74 (260)
271 PF04989 CmcI: Cephalosporin h 96.0 0.023 5E-07 48.2 6.8 98 189-290 32-150 (206)
272 PRK10857 DNA-binding transcrip 96.0 0.015 3.1E-07 47.9 5.5 62 32-99 9-70 (164)
273 COG2345 Predicted transcriptio 95.9 0.011 2.3E-07 50.5 4.5 62 40-102 14-79 (218)
274 COG1092 Predicted SAM-dependen 95.9 0.02 4.3E-07 53.7 6.6 97 189-288 217-337 (393)
275 PRK03902 manganese transport t 95.9 0.012 2.7E-07 47.2 4.4 50 51-104 21-70 (142)
276 TIGR00308 TRM1 tRNA(guanine-26 95.9 0.03 6.5E-07 52.5 7.6 91 190-287 45-147 (374)
277 smart00347 HTH_MARR helix_turn 95.9 0.012 2.6E-07 43.7 4.1 65 39-104 12-78 (101)
278 PF08220 HTH_DeoR: DeoR-like h 95.8 0.015 3.2E-07 38.7 4.0 45 41-86 4-48 (57)
279 TIGR02337 HpaR homoprotocatech 95.8 0.015 3.3E-07 45.0 4.6 68 37-105 28-97 (118)
280 COG3355 Predicted transcriptio 95.8 0.013 2.8E-07 45.3 4.1 50 38-87 28-77 (126)
281 KOG2793 Putative N2,N2-dimethy 95.8 0.059 1.3E-06 47.2 8.6 99 189-291 86-203 (248)
282 PF04703 FaeA: FaeA-like prote 95.8 0.0082 1.8E-07 40.4 2.5 46 41-86 4-49 (62)
283 PF12802 MarR_2: MarR family; 95.8 0.0076 1.7E-07 40.7 2.4 47 39-86 7-55 (62)
284 TIGR02702 SufR_cyano iron-sulf 95.8 0.014 3E-07 50.0 4.5 65 39-104 3-71 (203)
285 KOG4058 Uncharacterized conser 95.7 0.056 1.2E-06 42.9 7.2 106 178-292 63-177 (199)
286 COG1041 Predicted DNA modifica 95.7 0.12 2.6E-06 47.3 10.3 99 187-288 195-311 (347)
287 COG1497 Predicted transcriptio 95.6 0.014 3.1E-07 49.9 4.0 90 39-132 12-102 (260)
288 PF07381 DUF1495: Winged helix 95.6 0.018 3.9E-07 41.9 3.9 69 36-104 8-87 (90)
289 PF04967 HTH_10: HTH DNA bindi 95.6 0.023 4.9E-07 37.0 4.0 44 30-77 5-48 (53)
290 COG2520 Predicted methyltransf 95.6 0.042 9.2E-07 50.4 7.2 97 189-293 188-295 (341)
291 PF01047 MarR: MarR family; I 95.5 0.0095 2E-07 39.8 1.9 47 39-86 5-51 (59)
292 PRK11050 manganese transport r 95.4 0.075 1.6E-06 43.2 7.3 58 42-104 42-99 (152)
293 COG0742 N6-adenine-specific me 95.4 0.13 2.8E-06 43.0 8.6 98 189-289 43-155 (187)
294 PF07757 AdoMet_MTase: Predict 95.3 0.024 5.2E-07 42.4 3.8 32 188-221 57-88 (112)
295 smart00420 HTH_DEOR helix_turn 95.3 0.029 6.2E-07 36.2 3.8 44 42-86 5-48 (53)
296 TIGR01884 cas_HTH CRISPR locus 95.3 0.027 5.9E-07 48.2 4.6 60 38-100 144-203 (203)
297 COG1321 TroR Mn-dependent tran 95.2 0.028 6E-07 45.7 4.3 51 51-105 23-73 (154)
298 COG1959 Predicted transcriptio 95.1 0.027 5.9E-07 45.6 4.0 48 51-100 24-71 (150)
299 TIGR02010 IscR iron-sulfur clu 95.1 0.03 6.5E-07 44.5 4.1 47 51-99 24-70 (135)
300 TIGR00738 rrf2_super rrf2 fami 95.1 0.027 5.8E-07 44.5 3.8 48 51-100 24-71 (132)
301 TIGR00122 birA_repr_reg BirA b 95.1 0.037 8E-07 38.3 4.0 56 39-100 2-57 (69)
302 PF01638 HxlR: HxlR-like helix 95.0 0.024 5.2E-07 41.6 3.2 62 42-105 10-74 (90)
303 PRK11512 DNA-binding transcrip 95.0 0.034 7.5E-07 44.7 4.3 64 39-104 42-108 (144)
304 PF08461 HTH_12: Ribonuclease 95.0 0.026 5.6E-07 38.7 3.0 56 42-101 3-63 (66)
305 COG2265 TrmA SAM-dependent met 95.0 0.067 1.4E-06 51.1 6.8 90 187-285 291-394 (432)
306 PF10672 Methyltrans_SAM: S-ad 95.0 0.082 1.8E-06 47.5 6.9 97 189-287 123-238 (286)
307 COG4189 Predicted transcriptio 94.9 0.043 9.3E-07 46.7 4.6 57 28-85 14-70 (308)
308 PF01795 Methyltransf_5: MraW 94.9 0.06 1.3E-06 48.8 5.8 66 176-243 9-80 (310)
309 PF01726 LexA_DNA_bind: LexA D 94.9 0.032 7E-07 38.1 3.2 37 50-86 23-60 (65)
310 PRK03573 transcriptional regul 94.8 0.076 1.6E-06 42.6 5.8 65 41-105 35-101 (144)
311 cd07153 Fur_like Ferric uptake 94.8 0.051 1.1E-06 41.8 4.6 59 39-97 3-66 (116)
312 PF08279 HTH_11: HTH domain; 94.8 0.05 1.1E-06 35.6 3.9 41 41-81 4-44 (55)
313 TIGR01889 Staph_reg_Sar staphy 94.8 0.045 9.7E-07 41.7 4.2 66 38-104 26-97 (109)
314 PF03141 Methyltransf_29: Puta 94.7 0.074 1.6E-06 50.8 6.3 95 187-287 363-467 (506)
315 PF04072 LCM: Leucine carboxyl 94.7 0.12 2.5E-06 43.5 6.9 84 189-272 78-182 (183)
316 COG4190 Predicted transcriptio 94.7 0.047 1E-06 42.1 4.0 56 30-86 57-112 (144)
317 PLN02668 indole-3-acetate carb 94.7 0.64 1.4E-05 43.6 12.2 103 189-292 63-242 (386)
318 smart00418 HTH_ARSR helix_turn 94.7 0.062 1.3E-06 36.0 4.3 43 42-86 2-44 (66)
319 PRK11920 rirA iron-responsive 94.7 0.062 1.3E-06 43.7 4.9 47 51-99 23-69 (153)
320 PF06859 Bin3: Bicoid-interact 94.6 0.017 3.7E-07 43.5 1.4 86 247-344 1-94 (110)
321 cd07377 WHTH_GntR Winged helix 94.6 0.12 2.5E-06 35.0 5.6 34 53-86 26-59 (66)
322 COG0116 Predicted N6-adenine-s 94.5 0.38 8.3E-06 44.7 10.2 78 177-256 181-308 (381)
323 PF01861 DUF43: Protein of unk 94.5 1.6 3.5E-05 38.0 13.4 124 189-342 44-178 (243)
324 KOG2918 Carboxymethyl transfer 94.5 0.73 1.6E-05 41.4 11.5 147 187-343 85-278 (335)
325 PRK06266 transcription initiat 94.5 0.081 1.8E-06 44.1 5.3 46 40-86 25-70 (178)
326 PF01325 Fe_dep_repress: Iron 94.4 0.052 1.1E-06 36.4 3.3 37 50-86 20-56 (60)
327 cd00090 HTH_ARSR Arsenical Res 94.4 0.063 1.4E-06 37.3 4.1 57 39-98 9-65 (78)
328 TIGR02944 suf_reg_Xantho FeS a 94.4 0.046 9.9E-07 43.1 3.6 46 51-98 24-69 (130)
329 PF00325 Crp: Bacterial regula 94.4 0.038 8.3E-07 31.7 2.2 31 52-82 2-32 (32)
330 COG1064 AdhP Zn-dependent alco 94.3 0.32 7E-06 44.7 9.3 93 187-290 164-262 (339)
331 PRK11014 transcriptional repre 94.3 0.091 2E-06 42.1 5.1 61 32-98 9-69 (141)
332 smart00529 HTH_DTXR Helix-turn 94.2 0.059 1.3E-06 39.9 3.5 46 55-104 2-47 (96)
333 smart00345 HTH_GNTR helix_turn 94.1 0.098 2.1E-06 34.6 4.3 36 51-86 18-54 (60)
334 smart00344 HTH_ASNC helix_turn 94.0 0.062 1.3E-06 40.8 3.4 48 38-86 4-51 (108)
335 PF10007 DUF2250: Uncharacteri 93.8 0.078 1.7E-06 38.8 3.4 48 38-86 8-55 (92)
336 KOG3924 Putative protein methy 93.8 0.21 4.5E-06 46.3 6.8 108 178-291 183-312 (419)
337 PF05971 Methyltransf_10: Prot 93.8 0.27 5.9E-06 44.4 7.5 72 189-261 102-191 (299)
338 COG0144 Sun tRNA and rRNA cyto 93.7 1.1 2.3E-05 42.0 11.6 103 187-290 154-291 (355)
339 KOG2352 Predicted spermine/spe 93.6 0.84 1.8E-05 43.6 10.7 102 191-294 50-170 (482)
340 PF03444 HrcA_DNA-bdg: Winged 93.5 0.1 2.2E-06 36.7 3.5 48 50-100 21-69 (78)
341 PRK06474 hypothetical protein; 93.4 0.1 2.3E-06 43.5 4.0 70 31-100 5-79 (178)
342 COG4627 Uncharacterized protei 93.3 0.027 5.9E-07 45.0 0.4 40 247-287 47-86 (185)
343 PF13545 HTH_Crp_2: Crp-like h 93.1 0.1 2.2E-06 36.6 3.2 44 51-99 27-70 (76)
344 KOG2730 Methylase [General fun 93.1 0.067 1.5E-06 45.4 2.4 86 189-278 94-194 (263)
345 KOG0822 Protein kinase inhibit 93.1 0.61 1.3E-05 44.9 8.9 124 149-281 333-472 (649)
346 PF10354 DUF2431: Domain of un 92.9 2 4.3E-05 35.4 10.8 121 195-344 2-154 (166)
347 PRK15431 ferrous iron transpor 92.8 0.17 3.6E-06 35.6 3.6 44 42-86 7-50 (78)
348 PRK14165 winged helix-turn-hel 92.8 0.16 3.4E-06 43.7 4.3 59 43-103 13-71 (217)
349 COG0275 Predicted S-adenosylme 92.8 0.4 8.6E-06 43.0 6.8 66 176-243 12-84 (314)
350 PF14394 DUF4423: Domain of un 92.8 0.34 7.3E-06 40.2 6.1 63 27-101 22-86 (171)
351 KOG1562 Spermidine synthase [A 92.7 0.32 7E-06 43.3 6.0 100 187-288 119-237 (337)
352 PRK04172 pheS phenylalanyl-tRN 92.4 0.11 2.5E-06 50.6 3.4 68 38-108 7-75 (489)
353 PHA02943 hypothetical protein; 92.4 0.19 4.1E-06 39.9 3.8 46 40-87 14-59 (165)
354 TIGR01610 phage_O_Nterm phage 92.2 0.24 5.2E-06 36.7 4.1 44 51-97 46-89 (95)
355 TIGR00373 conserved hypothetic 92.2 0.17 3.6E-06 41.4 3.5 46 40-86 17-62 (158)
356 PF03492 Methyltransf_7: SAM d 92.2 1.1 2.3E-05 41.6 9.2 105 187-292 14-188 (334)
357 PF06163 DUF977: Bacterial pro 92.1 0.27 5.8E-06 37.8 4.2 51 35-86 10-60 (127)
358 PRK13777 transcriptional regul 92.1 1 2.3E-05 37.7 8.2 64 40-105 48-114 (185)
359 PF05958 tRNA_U5-meth_tr: tRNA 92.0 0.22 4.8E-06 46.4 4.7 60 177-241 187-253 (352)
360 PRK10870 transcriptional repre 91.8 0.37 8.1E-06 40.2 5.4 66 40-105 58-126 (176)
361 PF03514 GRAS: GRAS domain fam 91.8 1.4 3E-05 41.5 9.7 111 176-291 99-247 (374)
362 PF07789 DUF1627: Protein of u 91.7 0.27 5.8E-06 38.9 4.0 37 51-87 5-41 (155)
363 PLN02853 Probable phenylalanyl 91.5 0.17 3.7E-06 48.6 3.3 70 37-109 3-74 (492)
364 PRK10742 putative methyltransf 91.5 0.49 1.1E-05 41.5 5.8 73 178-254 77-171 (250)
365 PF02319 E2F_TDP: E2F/DP famil 91.3 0.15 3.2E-06 35.5 2.0 43 42-86 16-63 (71)
366 cd00315 Cyt_C5_DNA_methylase C 91.1 1.8 3.9E-05 38.9 9.4 122 192-340 2-141 (275)
367 COG3432 Predicted transcriptio 91.0 0.14 3.1E-06 37.5 1.8 53 50-103 29-81 (95)
368 PF01189 Nol1_Nop2_Fmu: NOL1/N 90.8 1.1 2.4E-05 40.4 7.8 101 187-288 83-220 (283)
369 COG1378 Predicted transcriptio 90.6 0.4 8.6E-06 42.3 4.5 65 38-105 17-81 (247)
370 PRK11179 DNA-binding transcrip 90.5 0.3 6.6E-06 39.6 3.5 49 37-86 9-57 (153)
371 PRK11169 leucine-responsive tr 90.5 0.3 6.4E-06 40.2 3.4 49 36-85 13-61 (164)
372 TIGR00498 lexA SOS regulatory 90.4 0.36 7.9E-06 41.0 4.1 36 51-86 24-60 (199)
373 PF04182 B-block_TFIIIC: B-blo 90.3 0.28 6.2E-06 34.5 2.8 49 38-86 3-52 (75)
374 PTZ00326 phenylalanyl-tRNA syn 90.3 0.3 6.5E-06 47.2 3.7 71 37-109 6-77 (494)
375 COG1846 MarR Transcriptional r 90.2 0.4 8.8E-06 36.8 3.9 68 36-104 21-90 (126)
376 COG2512 Predicted membrane-ass 90.0 0.28 6E-06 43.5 3.0 49 39-87 197-245 (258)
377 COG1522 Lrp Transcriptional re 89.7 0.39 8.5E-06 38.8 3.6 48 38-86 9-56 (154)
378 COG4565 CitB Response regulato 89.6 0.41 8.8E-06 40.6 3.5 36 51-86 172-207 (224)
379 COG3413 Predicted DNA binding 89.5 0.51 1.1E-05 40.7 4.2 45 29-77 159-203 (215)
380 PF12793 SgrR_N: Sugar transpo 89.4 0.4 8.6E-06 36.9 3.1 36 51-86 18-53 (115)
381 PF01475 FUR: Ferric uptake re 89.4 0.34 7.3E-06 37.5 2.8 63 36-98 7-74 (120)
382 COG1255 Uncharacterized protei 89.4 4.3 9.2E-05 30.9 8.3 85 189-286 13-101 (129)
383 COG1733 Predicted transcriptio 89.2 0.68 1.5E-05 35.9 4.4 78 17-105 12-92 (120)
384 PF12324 HTH_15: Helix-turn-he 89.1 0.35 7.5E-06 33.9 2.3 36 42-78 29-64 (77)
385 PF05584 Sulfolobus_pRN: Sulfo 88.6 0.81 1.8E-05 31.6 3.8 44 41-86 9-52 (72)
386 PF11899 DUF3419: Protein of u 88.6 0.89 1.9E-05 42.7 5.5 60 231-291 274-338 (380)
387 PF02002 TFIIE_alpha: TFIIE al 88.5 0.33 7.2E-06 36.6 2.1 45 41-86 17-61 (105)
388 PRK09775 putative DNA-binding 88.3 0.6 1.3E-05 44.9 4.2 54 42-100 5-58 (442)
389 COG1568 Predicted methyltransf 88.3 0.9 2E-05 40.2 4.8 209 52-285 34-258 (354)
390 PRK05638 threonine synthase; V 88.2 0.66 1.4E-05 44.8 4.5 61 39-101 373-435 (442)
391 PF13404 HTH_AsnC-type: AsnC-t 88.2 0.52 1.1E-05 29.0 2.5 38 38-76 4-41 (42)
392 COG1565 Uncharacterized conser 88.1 1.4 3E-05 40.7 6.2 62 157-224 51-121 (370)
393 KOG1099 SAM-dependent methyltr 87.8 2.5 5.3E-05 36.5 7.0 93 187-284 39-160 (294)
394 PF08784 RPA_C: Replication pr 87.8 0.44 9.6E-06 35.7 2.4 49 38-86 48-99 (102)
395 PRK04214 rbn ribonuclease BN/u 87.8 0.69 1.5E-05 44.2 4.3 45 50-98 308-352 (412)
396 PF13730 HTH_36: Helix-turn-he 87.6 0.53 1.2E-05 30.7 2.4 29 54-82 27-55 (55)
397 cd08283 FDH_like_1 Glutathione 87.6 5.8 0.00013 37.4 10.5 99 187-288 182-307 (386)
398 PF02636 Methyltransf_28: Puta 87.4 1.3 2.8E-05 39.2 5.6 35 190-224 19-62 (252)
399 PF05732 RepL: Firmicute plasm 87.3 0.72 1.6E-05 37.9 3.6 44 52-99 75-118 (165)
400 PF00392 GntR: Bacterial regul 87.3 1.4 3.1E-05 29.7 4.5 36 51-86 22-58 (64)
401 PRK13509 transcriptional repre 87.2 0.83 1.8E-05 40.5 4.2 47 39-86 7-53 (251)
402 PF08221 HTH_9: RNA polymerase 87.2 0.62 1.3E-05 31.4 2.6 43 42-85 18-60 (62)
403 TIGR02147 Fsuc_second hypothet 87.1 0.98 2.1E-05 40.4 4.6 46 51-100 136-183 (271)
404 PF14338 Mrr_N: Mrr N-terminal 87.1 0.85 1.8E-05 33.5 3.5 34 68-105 56-89 (92)
405 KOG2187 tRNA uracil-5-methyltr 86.8 0.82 1.8E-05 44.0 4.0 55 187-243 381-442 (534)
406 PRK00215 LexA repressor; Valid 86.7 0.95 2.1E-05 38.6 4.2 37 50-86 21-58 (205)
407 PRK11886 bifunctional biotin-- 86.2 0.99 2.1E-05 41.5 4.3 58 39-100 6-63 (319)
408 PF03686 UPF0146: Uncharacteri 86.2 2.3 5E-05 33.0 5.6 86 189-288 13-103 (127)
409 KOG2920 Predicted methyltransf 85.7 0.8 1.7E-05 40.7 3.2 94 189-285 116-232 (282)
410 COG1510 Predicted transcriptio 85.5 0.83 1.8E-05 37.3 2.9 36 51-86 40-75 (177)
411 PRK11753 DNA-binding transcrip 85.5 1 2.3E-05 38.3 3.9 35 52-86 168-202 (211)
412 PRK09462 fur ferric uptake reg 84.9 1.7 3.6E-05 35.0 4.6 62 36-97 16-83 (148)
413 PRK12423 LexA repressor; Provi 84.7 0.93 2E-05 38.7 3.1 35 52-86 25-60 (202)
414 PRK10906 DNA-binding transcrip 84.4 1.2 2.6E-05 39.4 3.8 48 38-86 6-53 (252)
415 PRK10411 DNA-binding transcrip 84.2 1.6 3.4E-05 38.4 4.4 46 40-86 7-52 (240)
416 PF02153 PDH: Prephenate dehyd 83.9 2.2 4.7E-05 37.9 5.3 72 203-281 1-73 (258)
417 TIGR03697 NtcA_cyano global ni 83.7 1.4 3E-05 36.9 3.8 35 52-86 143-177 (193)
418 KOG1501 Arginine N-methyltrans 83.3 1.7 3.7E-05 41.0 4.3 87 189-276 66-164 (636)
419 PRK11161 fumarate/nitrate redu 83.2 1.3 2.8E-05 38.6 3.5 42 52-98 184-225 (235)
420 PF09821 AAA_assoc_C: C-termin 83.2 3.9 8.4E-05 31.7 5.7 75 57-137 2-76 (120)
421 PF13518 HTH_28: Helix-turn-he 83.1 1.4 3.1E-05 28.0 2.8 29 53-81 13-41 (52)
422 PF06969 HemN_C: HemN C-termin 82.7 1.7 3.7E-05 29.4 3.2 46 51-101 19-65 (66)
423 PF02254 TrkA_N: TrkA-N domain 82.6 7.4 0.00016 29.4 7.2 81 198-285 4-94 (116)
424 PRK10046 dpiA two-component re 82.6 1.6 3.4E-05 37.8 3.8 46 41-86 166-211 (225)
425 PRK10434 srlR DNA-bindng trans 82.3 1.6 3.5E-05 38.8 3.7 47 39-86 7-53 (256)
426 PRK09802 DNA-binding transcrip 82.2 1.6 3.5E-05 39.0 3.8 48 38-86 18-65 (269)
427 PF00165 HTH_AraC: Bacterial r 82.2 1.2 2.6E-05 27.2 2.1 27 51-77 7-33 (42)
428 COG1654 BirA Biotin operon rep 82.2 2.7 5.8E-05 29.9 4.1 55 42-101 11-65 (79)
429 PF06962 rRNA_methylase: Putat 82.1 4.4 9.6E-05 32.2 5.7 70 215-287 1-92 (140)
430 TIGR02787 codY_Gpos GTP-sensin 82.0 1.8 4E-05 37.5 3.8 46 41-86 187-232 (251)
431 PF13384 HTH_23: Homeodomain-l 82.0 0.94 2E-05 28.8 1.6 40 39-81 7-46 (50)
432 COG0735 Fur Fe2+/Zn2+ uptake r 82.0 2.1 4.6E-05 34.4 4.0 63 37-99 21-88 (145)
433 COG3510 CmcI Cephalosporin hyd 81.9 15 0.00032 30.9 8.8 103 189-294 69-187 (237)
434 PF09904 HTH_43: Winged helix- 81.8 2.3 4.9E-05 30.8 3.6 57 42-100 13-72 (90)
435 COG1063 Tdh Threonine dehydrog 81.7 6 0.00013 36.9 7.5 93 191-292 170-274 (350)
436 KOG1596 Fibrillarin and relate 81.5 16 0.00034 31.9 9.1 99 187-290 154-264 (317)
437 COG0287 TyrA Prephenate dehydr 81.4 6.9 0.00015 35.2 7.4 82 191-278 4-90 (279)
438 PRK09424 pntA NAD(P) transhydr 81.3 8.8 0.00019 37.7 8.6 95 188-288 163-286 (509)
439 PF02796 HTH_7: Helix-turn-hel 81.1 1.1 2.3E-05 28.0 1.6 23 52-74 21-43 (45)
440 TIGR03879 near_KaiC_dom probab 81.1 0.88 1.9E-05 31.7 1.3 34 51-84 31-64 (73)
441 KOG2539 Mitochondrial/chloropl 81.1 5.1 0.00011 38.3 6.6 99 189-288 200-316 (491)
442 PRK13918 CRP/FNR family transc 81.0 2 4.2E-05 36.3 3.7 42 52-98 149-190 (202)
443 COG1349 GlpR Transcriptional r 80.8 1.9 4.2E-05 38.1 3.7 47 39-86 7-53 (253)
444 PF05331 DUF742: Protein of un 80.5 2.3 5E-05 32.5 3.5 37 51-87 54-90 (114)
445 KOG0024 Sorbitol dehydrogenase 80.5 14 0.0003 33.8 8.8 97 187-292 167-278 (354)
446 PF10237 N6-adenineMlase: Prob 80.1 26 0.00057 28.7 9.8 92 189-287 25-123 (162)
447 PF04445 SAM_MT: Putative SAM- 80.0 3 6.6E-05 36.3 4.5 76 178-257 64-161 (234)
448 PRK09391 fixK transcriptional 79.8 2.4 5.3E-05 36.8 4.0 43 52-98 179-221 (230)
449 PF07109 Mg-por_mtran_C: Magne 79.7 8.5 0.00018 28.4 6.1 85 255-354 3-97 (97)
450 TIGR00675 dcm DNA-methyltransf 79.6 12 0.00025 34.4 8.6 119 193-339 1-137 (315)
451 COG4519 Uncharacterized protei 79.5 4.4 9.5E-05 28.4 4.2 51 50-100 20-73 (95)
452 PRK09954 putative kinase; Prov 79.2 2.1 4.6E-05 40.0 3.6 44 39-83 5-48 (362)
453 PRK11639 zinc uptake transcrip 79.1 3.8 8.1E-05 33.9 4.7 51 36-86 25-80 (169)
454 PRK07502 cyclohexadienyl dehyd 79.0 11 0.00023 34.4 8.1 89 190-284 6-97 (307)
455 TIGR02698 CopY_TcrY copper tra 78.8 3.3 7.1E-05 32.6 4.0 48 38-86 5-56 (130)
456 TIGR01321 TrpR trp operon repr 78.6 2.3 5E-05 31.2 2.8 41 35-77 40-80 (94)
457 PF11972 HTH_13: HTH DNA bindi 78.6 3.2 6.9E-05 27.0 3.2 46 42-95 4-49 (54)
458 PRK10402 DNA-binding transcrip 78.6 2.3 5E-05 36.8 3.5 41 52-97 169-209 (226)
459 PHA02701 ORF020 dsRNA-binding 78.5 3.6 7.9E-05 34.1 4.3 58 38-97 5-62 (183)
460 TIGR00635 ruvB Holliday juncti 78.5 1.6 3.4E-05 39.8 2.5 37 50-86 253-290 (305)
461 PF03428 RP-C: Replication pro 78.4 3 6.5E-05 34.7 3.9 34 54-87 72-106 (177)
462 PF11994 DUF3489: Protein of u 78.4 6.1 0.00013 27.4 4.7 54 42-96 15-71 (72)
463 PRK10736 hypothetical protein; 78.2 3.2 6.9E-05 38.9 4.3 51 40-96 311-361 (374)
464 PF02295 z-alpha: Adenosine de 78.1 0.92 2E-05 31.0 0.6 58 38-98 5-64 (66)
465 PF05206 TRM13: Methyltransfer 77.9 6.1 0.00013 35.1 5.9 36 187-222 16-56 (259)
466 PHA02591 hypothetical protein; 77.7 2.5 5.4E-05 29.5 2.6 32 42-75 51-82 (83)
467 PF03721 UDPG_MGDP_dh_N: UDP-g 77.4 6.1 0.00013 33.2 5.5 99 192-293 2-125 (185)
468 PRK13239 alkylmercury lyase; P 77.0 2.2 4.8E-05 36.2 2.8 39 39-78 24-62 (206)
469 PRK00135 scpB segregation and 76.8 4.2 9.2E-05 34.2 4.4 43 40-86 93-135 (188)
470 COG5631 Predicted transcriptio 76.8 8.4 0.00018 31.1 5.7 76 25-101 64-147 (199)
471 PF09681 Phage_rep_org_N: N-te 76.8 4.2 9.1E-05 31.5 4.0 47 51-101 52-98 (121)
472 TIGR03338 phnR_burk phosphonat 75.9 3.6 7.9E-05 35.1 3.9 37 50-86 32-68 (212)
473 PRK11534 DNA-binding transcrip 75.7 4.3 9.4E-05 35.0 4.4 47 50-100 28-74 (224)
474 PHA01634 hypothetical protein 74.8 11 0.00025 29.4 5.7 41 189-230 28-69 (156)
475 PRK09334 30S ribosomal protein 74.7 3.4 7.3E-05 29.8 2.7 36 51-86 40-75 (86)
476 PF08280 HTH_Mga: M protein tr 74.3 2.5 5.5E-05 28.0 2.0 39 38-77 6-44 (59)
477 PF05711 TylF: Macrocin-O-meth 74.2 6.2 0.00013 34.8 4.9 95 189-285 74-210 (248)
478 PRK04424 fatty acid biosynthes 73.6 1.9 4.2E-05 36.2 1.6 47 39-86 9-55 (185)
479 COG0640 ArsR Predicted transcr 73.6 5.3 0.00012 29.0 3.9 56 30-86 18-73 (110)
480 PF13936 HTH_38: Helix-turn-he 73.2 3.3 7.2E-05 25.6 2.2 24 51-74 19-42 (44)
481 smart00531 TFIIE Transcription 73.1 3.8 8.1E-05 33.0 3.1 41 41-82 5-45 (147)
482 PF10668 Phage_terminase: Phag 73.1 3.5 7.6E-05 27.5 2.3 23 50-72 20-42 (60)
483 PRK07417 arogenate dehydrogena 72.9 18 0.0004 32.4 7.8 79 192-278 2-83 (279)
484 COG5379 BtaA S-adenosylmethion 72.7 6.1 0.00013 35.4 4.4 65 222-287 296-366 (414)
485 PF14557 AphA_like: Putative A 72.5 6.9 0.00015 31.9 4.3 65 35-101 9-83 (175)
486 PF09106 SelB-wing_2: Elongati 72.1 5.8 0.00013 26.3 3.3 36 51-86 16-54 (59)
487 PTZ00357 methyltransferase; Pr 72.0 25 0.00055 35.6 8.8 128 149-277 640-822 (1072)
488 PF09202 Rio2_N: Rio2, N-termi 72.0 7.2 0.00016 27.9 3.9 58 36-100 13-70 (82)
489 KOG1269 SAM-dependent methyltr 71.9 20 0.00044 33.6 7.9 104 189-295 180-321 (364)
490 COG0286 HsdM Type I restrictio 71.7 26 0.00057 34.3 9.1 106 177-285 176-324 (489)
491 PF01210 NAD_Gly3P_dh_N: NAD-d 71.6 7.7 0.00017 31.5 4.6 88 192-285 1-101 (157)
492 COG1802 GntR Transcriptional r 71.5 11 0.00023 32.8 5.8 47 50-100 37-83 (230)
493 KOG2651 rRNA adenine N-6-methy 71.4 6.8 0.00015 36.5 4.6 35 187-222 151-185 (476)
494 COG1725 Predicted transcriptio 71.4 5.9 0.00013 30.8 3.6 41 53-96 36-76 (125)
495 PRK00080 ruvB Holliday junctio 71.2 2.7 5.9E-05 38.8 2.1 37 50-86 274-311 (328)
496 PF03551 PadR: Transcriptional 71.2 3.4 7.3E-05 28.9 2.1 51 51-101 8-70 (75)
497 COG1675 TFA1 Transcription ini 71.1 5.2 0.00011 33.1 3.5 46 40-86 21-66 (176)
498 TIGR03433 padR_acidobact trans 71.1 8.6 0.00019 28.6 4.4 61 41-103 8-80 (100)
499 PRK11414 colanic acid/biofilm 70.9 7.2 0.00016 33.6 4.6 37 50-86 32-68 (221)
500 PF08222 HTH_CodY: CodY helix- 70.5 2.7 5.7E-05 27.5 1.3 36 51-86 3-38 (61)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=7.8e-43 Score=308.74 Aligned_cols=333 Identities=38% Similarity=0.667 Sum_probs=287.7
Q ss_pred cchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcC-----CCcccHHHHHHHHhccCceeeccCC
Q 018565 14 EDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALK-----CDPSLLQRIMRFLIHLKFFKEVPTS 88 (354)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g-----~~~~~l~~lL~~L~~~g~l~~~~~~ 88 (354)
..+...+++++++++...+++++|+||||||.|.++++ ..|||..+. .+|..+.|+||.|++.++++..-..
T Consensus 3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~---p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~ 79 (342)
T KOG3178|consen 3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAGS---PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG 79 (342)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCC---HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec
Confidence 34566789999999999999999999999999998422 666666665 4677999999999999999888631
Q ss_pred CCCceEecCcccchhhc-CCCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHH
Q 018565 89 QGSMAFQQTPLSRRLMR-HGENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDA 167 (354)
Q Consensus 89 ~~~~~y~~t~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 167 (354)
++ .|++++.++++.+ .+..++..++...++...++.|.++.+++..++ .+|..++|...++|...+......|+++
T Consensus 80 -~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~s 156 (342)
T KOG3178|consen 80 -GE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGS 156 (342)
T ss_pred -ce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHH
Confidence 12 7999999986554 344589998888878889999999999999987 4888899988899999888888899999
Q ss_pred hhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccC-CCeEEeecCCCCCCC
Q 018565 168 MACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKC-HGVEHVGGDMFDGVP 246 (354)
Q Consensus 168 m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~d~~~~~~ 246 (354)
|...+....+.+++.+. +++.....||+|||.|..+..++..||++.++.+|+|.+++.+... +.|+.+.+|+|++.|
T Consensus 157 m~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P 235 (342)
T KOG3178|consen 157 MSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP 235 (342)
T ss_pred HHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCC
Confidence 99888887777887776 4778899999999999999999999999999999999999998875 779999999999999
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
..|+|++.++||||+|+++.++|+++++.|+| +|+|++.|.+.++...-+.........+|+.|+.++.+|+.|+.+|+
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~-~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~ 314 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPP-GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEF 314 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCC-CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHH
Confidence 99999999999999999999999999999999 99999999988852220111122346678899988788999999999
Q ss_pred HHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 327 DYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
+.++.++||....+.-.+..+++|+++|
T Consensus 315 q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 315 QALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HhcchhhcCceeEEEeccCccchheeCC
Confidence 9999999999999999999999999986
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=1.1e-39 Score=297.90 Aligned_cols=289 Identities=16% Similarity=0.321 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhcCC
Q 018565 29 TNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMRHG 107 (354)
Q Consensus 29 ~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~ 107 (354)
....+|++|+++||||.|.+ +|.|++|||+++|++++.+++||++|+++|+|++.+ ++|++|+.++ ++.+++
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~~-----~~y~~t~~~~~~l~~~~ 74 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-----GKWSLTEFADYMFSPTP 74 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEecC-----CcEecchhHHhhccCCc
Confidence 35789999999999999987 799999999999999999999999999999999876 8999999997 554444
Q ss_pred Cc---chHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhh-hchhhhHHHHHhcC
Q 018565 108 EN---NMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMA-CDTRLAMRAIIEGC 183 (354)
Q Consensus 108 ~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~~~~~~ 183 (354)
+. ++.++..+.. ......|.+|+++++++. +|...++ +....++. ..|...|. .......+.+++.+
T Consensus 75 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~~~--~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 145 (306)
T TIGR02716 75 KEPNLHQTPVAKAMA-FLADDFYMGLSQAVRGQK--NFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAIQLLLEEA 145 (306)
T ss_pred cchhhhcCchHHHHH-HHHHHHHHhHHHHhcCCc--ccccccC-----CCCCCHHH-HHhHHHHHHhcchhHHHHHHHHc
Confidence 32 1122333221 123457899999998542 3332221 11111122 22333443 33333455666767
Q ss_pred CCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCCcceEEEecc
Q 018565 184 PEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVPEADAAIIKW 255 (354)
Q Consensus 184 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~D~i~~~~ 255 (354)
+ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|++++.+|+++ ++|++|+|++++
T Consensus 146 ~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~ 223 (306)
T TIGR02716 146 K--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR 223 (306)
T ss_pred C--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEh
Confidence 6 77889999999999999999999999999999999988887753 4789999999997 677899999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHh-hccc-CCcccCCHHHHHHHHHHc
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVM-MAHT-NKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~g~~~t~~e~~~ll~~a 333 (354)
++|+|+++.+.++|++++++|+| ||+++|.|.+.++... .. + ....+..+ .... .-...++.++|.++|+++
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~p-gG~l~i~d~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRS-GGRLLILDMVIDDPEN-PN-F---DYLSHYILGAGMPFSVLGFKEQARYKEILESL 297 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCC-CCEEEEEEeccCCCCC-ch-h---hHHHHHHHHcccccccccCCCHHHHHHHHHHc
Confidence 99999999899999999999999 9999999988765433 21 1 11111111 0000 111234589999999999
Q ss_pred CCceeEEE
Q 018565 334 GFSRYNIT 341 (354)
Q Consensus 334 Gf~~~~~~ 341 (354)
||+.++++
T Consensus 298 Gf~~v~~~ 305 (306)
T TIGR02716 298 GYKDVTMV 305 (306)
T ss_pred CCCeeEec
Confidence 99988754
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=2e-39 Score=286.59 Aligned_cols=235 Identities=34% Similarity=0.644 Sum_probs=204.0
Q ss_pred CceEecCcccchhhcCCC-cchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhh
Q 018565 91 SMAFQQTPLSRRLMRHGE-NNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMA 169 (354)
Q Consensus 91 ~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 169 (354)
+++|+||+.|+.|..+++ .++..++.+...+..+..|.+|++++++++ ++|...+|.++|+++.++++....|+.+|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 489999999986666554 578888887667889999999999999998 689999999999999999999999999999
Q ss_pred hchhhhH-HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCCCCcc
Q 018565 170 CDTRLAM-RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEA 248 (354)
Q Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~ 248 (354)
..+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.|||++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred hhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence 9888777 77888888 78889999999999999999999999999999999999999988999999999999988889
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCC--ceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDK--GKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~g--G~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
|+|+++++||+|+++++.++|++++++|+| | |+|+|+|.+.++... .+........+|++|+.. .+|+.||.+||
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~p-g~~g~llI~e~~~~~~~~-~~~~~~~~~~~dl~ml~~-~~G~~rt~~e~ 236 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKP-GKDGRLLIIEMVLPDDRT-GPPSAEMDALFDLNMLVL-TGGKERTEEEW 236 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEE-CTTEEEEEEEEEECSSSS-SHHHHHHHHHHHHHHHHH-HSSS-EEHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCC-CCCCeEEEEeeccCCCCC-CchHHHHHHHHHHHHHHh-cCCCCcCHHHH
Confidence 999999999999999999999999999999 8 999999999998876 532221225789999998 66999999999
Q ss_pred HHHHH
Q 018565 327 DYVLR 331 (354)
Q Consensus 327 ~~ll~ 331 (354)
++||+
T Consensus 237 ~~ll~ 241 (241)
T PF00891_consen 237 EALLK 241 (241)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=1.8e-17 Score=142.84 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=119.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCCc--ceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVPE--ADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~--~D~i~~~~~l 257 (354)
.++.+|||||||||.++..+++..+..+++++|+ +.|++.+++ ...++|+.+|+.+ |+|+ ||+|.++..|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 4689999999999999999999999999999999 999999886 1239999999999 9884 9999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHH-hh---ccc-C-C-----------ccc
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMV-MM---AHT-N-K-----------GKE 320 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~-~-~-----------g~~ 320 (354)
+++++. .++|++++|+||| ||++++.|...+.... .. .....+.+. .+ ... . + -..
T Consensus 130 rnv~d~--~~aL~E~~RVlKp-gG~~~vle~~~p~~~~-~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~ 202 (238)
T COG2226 130 RNVTDI--DKALKEMYRVLKP-GGRLLVLEFSKPDNPV-LR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRF 202 (238)
T ss_pred hcCCCH--HHHHHHHHHhhcC-CeEEEEEEcCCCCchh-hH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhC
Confidence 999865 4899999999999 9999999998876644 21 111111111 10 000 0 1 133
Q ss_pred CCHHHHHHHHHHcCCceeEEEEcCCc
Q 018565 321 RSLKEWDYVLRQAGFSRYNITSIHAV 346 (354)
Q Consensus 321 ~t~~e~~~ll~~aGf~~~~~~~~~~~ 346 (354)
.+.+++.++++++||+.+....+..+
T Consensus 203 p~~~~l~~~~~~~gf~~i~~~~~~~G 228 (238)
T COG2226 203 PDQEELKQMIEKAGFEEVRYENLTFG 228 (238)
T ss_pred CCHHHHHHHHHhcCceEEeeEeeeee
Confidence 47899999999999999886666443
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.78 E-value=7.2e-19 Score=155.09 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=119.6
Q ss_pred CCCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCcceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKA--FPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPEADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~D~i~~~~~ 256 (354)
.+..+|||||||+|..+..++++ +|+.+++++|+ +++++.+++ ..+++++.+|+.+ +.+++|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 35679999999999999999987 47899999999 899988764 3478999999998 6778999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhc-----------------ccCCcc
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMA-----------------HTNKGK 319 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~~~~g~ 319 (354)
+|++++++...++++++++|+| ||.+++.|.+.+++.. .. .....++... ....-.
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp-gG~l~i~d~~~~~~~~-~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 204 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP-NGVLVLSEKFRFEDTK-IN-----HLLIDLHHQFKRANGYSELEISQKRTALENVMR 204 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC-CeEEEEeecccCCCHh-HH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCC
Confidence 9999988888999999999999 9999999987655433 11 0111111100 001124
Q ss_pred cCCHHHHHHHHHHcCCceeEEEEcCCceeEEEE
Q 018565 320 ERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEA 352 (354)
Q Consensus 320 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~ 352 (354)
..|.+++.++++++||+.+++.........+.+
T Consensus 205 ~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~ 237 (239)
T TIGR00740 205 TDSIETHKARLKNVGFSHVELWFQCFNFGSLVA 237 (239)
T ss_pred CCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhe
Confidence 568999999999999998765444343443333
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.76 E-value=7.1e-17 Score=143.78 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=118.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCC-CCC--cceEEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFD-GVP--EADAAI 252 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~i~ 252 (354)
..+..+|||||||+|.++..+++++ |+.+++++|+ ++|++.+++ ..+++++.+|+.+ |++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998874 6779999999 899988753 2479999999988 765 399999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH-H-hh-c-cc----------CCc
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM-V-MM-A-HT----------NKG 318 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l-~-~~-~-~~----------~~g 318 (354)
+..++|++++. .++|++++++||| ||+++++|...++... ..+. ....... . .. . .. .-.
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp-GG~l~i~d~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~ 224 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP-GSRVSILDFNKSTQPF-TTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSIN 224 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc-CcEEEEEECCCCCcHH-HHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHHH
Confidence 99999998865 5889999999999 9999999987654322 1100 0000000 0 00 0 00 002
Q ss_pred ccCCHHHHHHHHHHcCCceeEEEEcCCc-eeEEEEe
Q 018565 319 KERSLKEWDYVLRQAGFSRYNITSIHAV-QSLIEAF 353 (354)
Q Consensus 319 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~i~~~ 353 (354)
..++.+++.++++++||+.++...+.+. ..+..+.
T Consensus 225 ~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 225 EYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred hcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 3568999999999999999998887654 4455543
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.75 E-value=5e-17 Score=144.91 Aligned_cols=155 Identities=13% Similarity=0.228 Sum_probs=119.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC--cc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP--EA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~--~~ 248 (354)
..++..+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ .+++++..+|+.+ +++ .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 45566666 7788999999999999999888765 679999999 888887764 4679999999987 665 49
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|+|++..+++|++.++...+|++++++||| ||++++.+........ . .. .... .... ......+.+++.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP-GG~lvi~d~~~~~~~~-~---~~--~~~~--~~~~-~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP-NGILLITDYCADKIEN-W---DE--EFKA--YIKK-RKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC-CcEEEEEEeccccccC-c---HH--HHHH--HHHh-cCCCCCCHHHHHH
Confidence 999999988888866778999999999999 9999999886654322 1 10 1100 1111 1123458999999
Q ss_pred HHHHcCCceeEEEEcC
Q 018565 329 VLRQAGFSRYNITSIH 344 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~ 344 (354)
+|+++||+.++...+.
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999988764
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=7.4e-18 Score=149.16 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=113.9
Q ss_pred CCCceEEEecCCccHHHHHHHH--HCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCcceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTK--AFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPEADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~D~i~~~~~ 256 (354)
.+..+|||||||+|..+..+++ .+|+.+++++|. +.+++.+++ ..+++++.+|+.+ +.+++|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4668999999999999999888 468999999999 999988865 3489999999988 6777999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHH-hhc------------ccCCcccCCH
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMV-MMA------------HTNKGKERSL 323 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~-~~~------------~~~~g~~~t~ 323 (354)
+|++++++..+++++++++||| ||.+++.|.+..+... ..+.. ...+.+.. ... ....-...|.
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp-GG~l~l~e~~~~~~~~-~~~~~-~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP-GGALVLSEKFSFEDAK-VGELL-FNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC-CCEEEEEEecCCCcch-hHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 9999888888999999999999 9999999977655443 11100 00000000 000 0001123489
Q ss_pred HHHHHHHHHcCCceeEEE
Q 018565 324 KEWDYVLRQAGFSRYNIT 341 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~~~ 341 (354)
++..++|+++||+.++++
T Consensus 212 ~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 212 ETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHcCchhHHHH
Confidence 999999999999876543
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.75 E-value=2e-18 Score=150.39 Aligned_cols=157 Identities=20% Similarity=0.311 Sum_probs=81.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCCc--ceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVPE--ADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~--~D~i~~~~ 255 (354)
..++.+|||+|||+|..+..++++. |+.+++++|+ +.|++.+++ ..+|+++.+|..+ |+++ ||+|+++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999874 6789999999 999999875 3589999999999 7764 99999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh--------cccCC----------
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM--------AHTNK---------- 317 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~---------- 317 (354)
.+|++++. .+.|++++|+||| ||+++|+|...|.... . ...+.+.+. ....+
T Consensus 125 glrn~~d~--~~~l~E~~RVLkP-GG~l~ile~~~p~~~~----~---~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~S 194 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKP-GGRLVILEFSKPRNPL----L---RALYKFYFKYILPLIGRLLSGDREAYRYLPES 194 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEE-EEEEEEEEEEB-SSHH----H---HHHHHH--------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCC-CeEEEEeeccCCCCch----h---hceeeeeecccccccccccccccccccccccc
Confidence 99999875 4789999999999 9999999998876432 1 111111110 00011
Q ss_pred -cccCCHHHHHHHHHHcCCceeEEEEcCCc-eeEEEEe
Q 018565 318 -GKERSLKEWDYVLRQAGFSRYNITSIHAV-QSLIEAF 353 (354)
Q Consensus 318 -g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~i~~~ 353 (354)
....+.+++.++++++||+.++..++... ..+..+.
T Consensus 195 i~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 195 IRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp --------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccC
Confidence 12336899999999999999998887544 4444443
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=1.9e-16 Score=139.06 Aligned_cols=167 Identities=19% Similarity=0.287 Sum_probs=122.3
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP-- 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-- 246 (354)
.++..+. ..++.+|||+|||+|.++..+++.. |..+++++|+ +++++.+++ .+++++..+|+.+ +++
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 4444455 5677899999999999999999875 6789999999 888877664 3579999999987 554
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhh-hhccH----------------
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVR-LMLDM---------------- 309 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~-~~~~l---------------- 309 (354)
.||+|++..++|++++. .++|+++.++|+| ||.+++.+...+.... +.... ..+..
T Consensus 114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~-gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~ 186 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKP-GGKVVCLETSQPTIPG----FKQLYFFYFKYIMPLFGKLFAKSYKEY 186 (231)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHHcCc-CeEEEEEECCCCCChH----HHHHHHHHHcChhHHhhHHhcCCHHHH
Confidence 49999999999988765 4899999999999 9999998865433211 10000 00000
Q ss_pred HhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEeC
Q 018565 310 VMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH-AVQSLIEAFP 354 (354)
Q Consensus 310 ~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 354 (354)
..+.. .....++.+++.++|+++||+.+++.+.. +...++.++|
T Consensus 187 ~~~~~-~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 187 SWLQE-STRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 00000 11234578999999999999999999986 5666777775
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.70 E-value=6e-16 Score=143.05 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=110.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~~ 256 (354)
.++.+|||||||+|..+..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 679999999 888876653 3579999999988 655 4999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc-ch-hhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN-KF-KSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
+||+++. .+++++++++||| ||+++|.+........ .. .. ......++...... ......+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp-GG~lvi~~~~~~~~~~-~~~~l~~~~~~~~~~i~~~~-~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP-GGRIIIVTWCHRDLEP-GETSLKPDEQKLLDKICAAY-YLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC-CcEEEEEEeccccccc-ccccCCHHHHHHHHHHHhhc-cCCCCCCHHHHHHHHHHCC
Confidence 9998865 4899999999999 9999998875432211 10 00 00001111100011 1112347999999999999
Q ss_pred CceeEEEEcC
Q 018565 335 FSRYNITSIH 344 (354)
Q Consensus 335 f~~~~~~~~~ 344 (354)
|..+++..+.
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999987764
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=8e-16 Score=136.99 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=110.3
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-C-CCcceEEEe
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-G-VPEADAAII 253 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~-~~~~D~i~~ 253 (354)
..+++.+. ..++.+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+ + .+.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 45566666 56778999999999999999999999999999999 899998875 568999999876 2 235999999
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhh----hhccH-HhhcccCCcccCCHHHHHH
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVR----LMLDM-VMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~----~~~~l-~~~~~~~~g~~~t~~e~~~ 328 (354)
+.++|++++. .+++++++++||| ||++++....... .. ........ .+... .......+....+.+++.+
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lkp-gG~l~~~~~~~~~-~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAP-GSWIAVQVPGNFD-AP-SHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCC-CcEEEEEcCCCcC-Ch-hHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 9999998765 5889999999999 9999886422111 01 00000000 00000 0000101223458999999
Q ss_pred HHHHcCCceeE
Q 018565 329 VLRQAGFSRYN 339 (354)
Q Consensus 329 ll~~aGf~~~~ 339 (354)
+|+++||++..
T Consensus 171 ~l~~aGf~v~~ 181 (255)
T PRK14103 171 LLTDAGCKVDA 181 (255)
T ss_pred HHHhCCCeEEE
Confidence 99999998543
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=7.5e-16 Score=140.50 Aligned_cols=141 Identities=22% Similarity=0.266 Sum_probs=111.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCC--cceEEEeccccccC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDW 260 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~ 260 (354)
.+..+|||||||+|..+..+++..+..+++++|. +++++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999888889999999 888888765 4578999999987 554 49999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 340 (354)
++.+ ++|++++++|+| ||++++.+...+.... .....+..+ ...+.+|+.++|+++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLkP-GG~LvIi~~~~p~~~~-------~r~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKI-GGKACLIGPVHPTFWL-------SRFFADVWM-------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcCC-CcEEEEEEecCcchhH-------HHHhhhhhc-------cCCCHHHHHHHHHHCCCeEEEE
Confidence 8764 789999999999 9999988765432111 011111111 2357999999999999999998
Q ss_pred EEcCC
Q 018565 341 TSIHA 345 (354)
Q Consensus 341 ~~~~~ 345 (354)
..+..
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 87643
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.67 E-value=7.1e-15 Score=129.56 Aligned_cols=167 Identities=20% Similarity=0.224 Sum_probs=121.5
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP- 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~- 246 (354)
.++..+. ..+..+|||+|||+|.++..+++.+| +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+
T Consensus 42 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 3344444 34568999999999999999999987 789999999 777777654 2568999999987 433
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH-----HhhcccCC---
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM-----VMMAHTNK--- 317 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~--- 317 (354)
.||+|++.+++|++++. ..+|+++.++|+| ||.+++++...+.... .......+.. ..... .+
T Consensus 120 ~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~-gG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~ 191 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDI--DKALREMYRVLKP-GGRLVILEFSKPTNPP----LKKAYDFYLFKVLPLIGKLI-SKNAE 191 (239)
T ss_pred CCccEEEEecccccCCCH--HHHHHHHHHhccC-CcEEEEEEecCCCchH----HHHHHHHHHHhhhHHHHHHH-cCCcH
Confidence 49999999999998764 5889999999999 9999999876654321 0000000000 00000 00
Q ss_pred ---------cccCCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEeC
Q 018565 318 ---------GKERSLKEWDYVLRQAGFSRYNITSIH-AVQSLIEAFP 354 (354)
Q Consensus 318 ---------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 354 (354)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 134578999999999999999999874 5678888875
No 15
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.67 E-value=2e-15 Score=138.16 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=105.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc-------cCCCeEEeecCCCC-CCC-cceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE-------KCHGVEHVGGDMFD-GVP-EADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh 258 (354)
.+.+|||||||+|.++..+++..+. .++++|. +.++..++ ...++++..+|+.+ +.+ .||+|++..++|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4589999999999999999998765 5999998 55554322 13579999999887 554 499999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
|..+. ..+|+++++.|+| ||.+++.+.+.+.... ....+ ...+.. +. ..-..+|.+++.++|+++||+.+
T Consensus 201 H~~dp--~~~L~~l~~~Lkp-GG~lvl~~~~i~~~~~-~~l~p-~~~y~~--~~---~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 201 HRRSP--LDHLKQLKDQLVP-GGELVLETLVIDGDEN-TVLVP-GDRYAK--MR---NVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred ccCCH--HHHHHHHHHhcCC-CcEEEEEEEEecCCCc-cccCc-hhHHhc--Cc---cceeCCCHHHHHHHHHHcCCceE
Confidence 97765 4789999999999 9999887766655433 11000 000000 00 11124689999999999999999
Q ss_pred EEEEc
Q 018565 339 NITSI 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
++...
T Consensus 271 ~~~~~ 275 (322)
T PRK15068 271 RIVDV 275 (322)
T ss_pred EEEeC
Confidence 98765
No 16
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.67 E-value=8.4e-16 Score=136.91 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=113.0
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPE 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~ 247 (354)
.+.+++.+. +.++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+-.++
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 356677777 8899999999999999999999998 789999999 666665543 57899999998873348
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc-HHhhcccCCcccCCHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD-MVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~~~t~~e~ 326 (354)
||.|++..++.|++.+....+++++.++||| ||++++.......... . .......+ +....+ ++|..++.+++
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp-gG~~~lq~i~~~~~~~-~---~~~~~~~~~i~kyiF-Pgg~lps~~~~ 201 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKP-GGRLVLQTITHRDPPY-H---AERRSSSDFIRKYIF-PGGYLPSLSEI 201 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSET-TEEEEEEEEEE--HHH-H---HCTTCCCHHHHHHTS-TTS---BHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCC-CcEEEEEecccccccc-h---hhcCCCceEEEEeeC-CCCCCCCHHHH
Confidence 9999999999999988889999999999999 9999987776654322 1 00000001 222334 78888999999
Q ss_pred HHHHHHcCCceeEEEEcC
Q 018565 327 DYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~~ 344 (354)
...++++||++.++..++
T Consensus 202 ~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHTT-EEEEEEE-H
T ss_pred HHHHhcCCEEEEEEEEcC
Confidence 999999999999887764
No 17
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.66 E-value=2.6e-15 Score=125.56 Aligned_cols=158 Identities=11% Similarity=0.056 Sum_probs=125.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc----c--CCCe-EEeecCCCCC---CC--------cceEEE
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE----K--CHGV-EHVGGDMFDG---VP--------EADAAI 252 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~--~~~v-~~~~~d~~~~---~~--------~~D~i~ 252 (354)
+|||||||||..+..+++.+|+++..--|. ++.....+ . .+++ ..+..|+.++ .+ .||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999999999999988887 33322221 1 1222 2234455542 22 489999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHH
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQ 332 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~ 332 (354)
+.|++|..+.+.+..+++.+.++|+| ||.|++..++..+... ..+....||.+..........|+.+++.++.++
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~-gG~L~~YGPF~~~G~~----ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKP-GGLLFLYGPFNRDGKF----TSESNAAFDASLRSRDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCC-CCEEEEeCCcccCCEe----CCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence 99999999999999999999999999 9999999987765433 223556778777766567889999999999999
Q ss_pred cCCceeEEEEcCCceeEEEEeC
Q 018565 333 AGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 333 aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
+||+..+.+.+|.+..+++.+|
T Consensus 183 ~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 183 HGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCCccCcccccCCCCeEEEEeC
Confidence 9999999999999988887775
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.66 E-value=3.8e-15 Score=134.86 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=108.8
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc-------cCCCeEEeecCCCC-CC-Cc
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE-------KCHGVEHVGGDMFD-GV-PE 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~-~~-~~ 247 (354)
.++..+. ...+.+|||||||+|.++..++...+. .++++|. +.++..++ ...++.+..+++.+ +. ..
T Consensus 112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3444444 345689999999999999999887664 7899998 66655332 14678888888776 43 36
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++..++||+++. ..+|++++++||| ||.|++.+.+.+.... ..-.+ .... ..+. .....++.+++.
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~Lkp-GG~Lvletl~i~g~~~-~~l~p-~~ry--~k~~---nv~flpS~~~L~ 258 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVI-KGELVLETLVIDGDLN-TVLVP-KDRY--AKMK---NVYFIPSVSALK 258 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCC-CCEEEEEEEEecCccc-cccCc-hHHH--Hhcc---ccccCCCHHHHH
Confidence 9999999999998765 4789999999999 9999998877654332 10000 0000 0010 111345899999
Q ss_pred HHHHHcCCceeEEEEc
Q 018565 328 YVLRQAGFSRYNITSI 343 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~ 343 (354)
.+|+++||+.+++...
T Consensus 259 ~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 259 NWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHCCCeEEEEEec
Confidence 9999999999988764
No 19
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.66 E-value=5.5e-15 Score=128.90 Aligned_cols=161 Identities=18% Similarity=0.177 Sum_probs=118.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC--cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP--EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~--~~D~i~~~~~l 257 (354)
..++.+|||+|||+|..+..+++.+|. .+++++|+ +.++..+++ ..++++..+|+.+ +.+ .||+|+++..+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 346789999999999999999999886 78999999 777776654 3578999999987 443 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhc-----c--cCC---------cccC
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMA-----H--TNK---------GKER 321 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~-----~--~~~---------g~~~ 321 (354)
|+.++ ...+++++++.|+| ||++++.+...+.... +......+...++. . ..+ ....
T Consensus 117 ~~~~~--~~~~l~~~~~~L~~-gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T TIGR01934 117 RNVTD--IQKALREMYRVLKP-GGRLVILEFSKPANAL----LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFP 189 (223)
T ss_pred CCccc--HHHHHHHHHHHcCC-CcEEEEEEecCCCchh----hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCC
Confidence 98765 45899999999999 9999998876543321 10000000000000 0 000 1234
Q ss_pred CHHHHHHHHHHcCCceeEEEEcCCc-eeEEEEeC
Q 018565 322 SLKEWDYVLRQAGFSRYNITSIHAV-QSLIEAFP 354 (354)
Q Consensus 322 t~~e~~~ll~~aGf~~~~~~~~~~~-~~~i~~~~ 354 (354)
+.++|..+|+++||+.+++.++.+. .++++++|
T Consensus 190 ~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 190 SQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 7899999999999999999998664 77888875
No 20
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=2.3e-15 Score=132.08 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=128.3
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPE 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~ 247 (354)
.+.+++.+. +.++.+|||||||.|.++..+++++ +.+++++++ +++...+++ ..++++...|..+..+.
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 356677777 8999999999999999999999998 899999999 777776654 46899999998885555
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||-|+...+++|+..+....+++++++.|+| ||++++.....+.... . ....+ +.-... ++|..++.+++.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~-~G~~llh~I~~~~~~~-~----~~~~~--i~~yiF-PgG~lPs~~~i~ 208 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP-GGRMLLHSITGPDQEF-R----RFPDF--IDKYIF-PGGELPSISEIL 208 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCC-CceEEEEEecCCCccc-c----cchHH--HHHhCC-CCCcCCCHHHHH
Confidence 9999999999999999899999999999999 9999998877665332 1 01111 112233 889999999999
Q ss_pred HHHHHcCCceeEEEEcC
Q 018565 328 YVLRQAGFSRYNITSIH 344 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~~ 344 (354)
...+++||.+.++..++
T Consensus 209 ~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 209 ELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHhcCcEEehHhhhc
Confidence 99999999998876653
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=3.7e-15 Score=144.55 Aligned_cols=151 Identities=14% Similarity=0.193 Sum_probs=117.0
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC--c
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP--E 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~ 247 (354)
..+++.+. ..+..+|||||||+|..+..+++.+ +.+++++|+ +.++..+++ ..++++..+|+.+ +++ .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 44566665 5667899999999999999988876 779999999 888887754 4579999999988 554 3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++..+++|+++. .++|++++++||| ||++++.+........ .. ... .. ... .+...++.+++.
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~~-~~---~~~---~~--~~~-~g~~~~~~~~~~ 399 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP-GGKVLISDYCRSPGTP-SP---EFA---EY--IKQ-RGYDLHDVQAYG 399 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCC-CeEEEEEEeccCCCCC-cH---HHH---HH--HHh-cCCCCCCHHHHH
Confidence 9999999999998865 4899999999999 9999999887654322 11 111 11 111 334567899999
Q ss_pred HHHHHcCCceeEEEEc
Q 018565 328 YVLRQAGFSRYNITSI 343 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~ 343 (354)
++++++||+++++...
T Consensus 400 ~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 400 QMLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHHCCCeeeeeecc
Confidence 9999999999977654
No 22
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.65 E-value=8.4e-16 Score=119.08 Aligned_cols=98 Identities=24% Similarity=0.391 Sum_probs=84.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCC-CC-C-CCcceEEEecc-c
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDM-FD-G-VPEADAAIIKW-V 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~-~~-~-~~~~D~i~~~~-~ 256 (354)
++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .++++++.+|+ .. + .++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 367999999999999999999999999999999 889887764 68999999999 33 3 34699999999 6
Q ss_pred cccCC-hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 257 LHDWG-DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 257 lh~~~-~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+|++. .++..++++++++.|+| ||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p-gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP-GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 66443 35788999999999999 99999865
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.65 E-value=3.3e-15 Score=130.53 Aligned_cols=136 Identities=15% Similarity=0.224 Sum_probs=107.7
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-cceEEEeccccccC
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDW 260 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~ 260 (354)
.+|||||||+|..+..+++.+|+.+++++|+ ++++..+++ .+++++...|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 777776654 4678999999976 444 49999999999998
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 340 (354)
++. ..+|++++++|+| ||++++.+...+.... . . . + . ......+.++|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~-~---~-~----~-----~-~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD-GGHLVLADFIANLLSA-I---E-H----E-----E-TTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC-CCEEEEEEcccccCcc-c---c-c----c-----c-cccccCCHHHHHHHHHHCCCeEEEe
Confidence 764 5899999999999 9999998875432111 0 0 0 0 0 1112457899999999999999998
Q ss_pred EEcC
Q 018565 341 TSIH 344 (354)
Q Consensus 341 ~~~~ 344 (354)
..+.
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7763
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=6.1e-15 Score=125.94 Aligned_cols=140 Identities=15% Similarity=0.112 Sum_probs=106.6
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC-c
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP-E 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~ 247 (354)
+.+++.++ ..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..++++...|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 44555555 445689999999999999999986 568999999 888887664 2458888899877 444 4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++..++|+++++....++++++++|+| ||.+++++....++.. .+ . +....++.+|+.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp-gG~~~~~~~~~~~~~~-~~------~----------~~~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP-GGYNLIVAAMDTADYP-CT------V----------GFPFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC-CcEEEEEEEecCCCCC-CC------C----------CCCCccCHHHHH
Confidence 9999999999998888889999999999999 9998877654433221 00 0 011235788898
Q ss_pred HHHHHcCCceeEE
Q 018565 328 YVLRQAGFSRYNI 340 (354)
Q Consensus 328 ~ll~~aGf~~~~~ 340 (354)
++++ ||++++.
T Consensus 158 ~~~~--~~~~~~~ 168 (197)
T PRK11207 158 RYYE--GWEMVKY 168 (197)
T ss_pred HHhC--CCeEEEe
Confidence 8887 8988775
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.63 E-value=9.1e-15 Score=131.54 Aligned_cols=145 Identities=20% Similarity=0.253 Sum_probs=111.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--cceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP--EADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~i~~~~ 255 (354)
..++.+|||||||+|..+..+++. .+..+++++|+ +.+++.+++ .+++++..+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 557789999999999988877765 46678999999 888888775 3589999999987 654 499999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
++|++++. .+++++++++||| ||++++.+........ .....+..++.. ..+...+.++|.++|+++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp-GG~l~i~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP-GGRFAISDVVLRGELP-------EEIRNDAELYAG-CVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC-CcEEEEEEeeccCCCC-------HHHHHhHHHHhc-cccCCCCHHHHHHHHHHCCC
Confidence 99987764 4789999999999 9999999887544222 111122222222 23456689999999999999
Q ss_pred ceeEEEE
Q 018565 336 SRYNITS 342 (354)
Q Consensus 336 ~~~~~~~ 342 (354)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9987744
No 26
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.62 E-value=2.9e-14 Score=120.89 Aligned_cols=144 Identities=20% Similarity=0.302 Sum_probs=110.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCC------CeEEEeec-hHHhhhccc---------CCCeEEeecCCCC-CCCc--c
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPR------IRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFD-GVPE--A 248 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~--~ 248 (354)
....++||++||||..+..+++.-+. .++++.|+ |+++..+++ ..++.++.+|..+ |+|. |
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 35589999999999999999998766 78999999 999987754 4569999999999 8885 9
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhh--hhhccH---------------Hh
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSV--RLMLDM---------------VM 311 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~--~~~~~l---------------~~ 311 (354)
|.|++..-+.+|++.+ +.|++++|+||| ||++.+.|+-.-++.. ..+. ..+++. ..
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLKp-GGrf~cLeFskv~~~~----l~~fy~~ysf~VlpvlG~~iagd~~sYqY 251 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP-GGRFSCLEFSKVENEP----LKWFYDQYSFDVLPVLGEIIAGDRKSYQY 251 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcCC-CcEEEEEEccccccHH----HHHHHHhhhhhhhchhhHhhhhhHhhhhh
Confidence 9999999999998764 899999999999 9999999975444211 1111 111111 00
Q ss_pred hcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 312 MAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 312 ~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
+.. .-.+..+.+++..+.+++||+.+.
T Consensus 252 Lve-SI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 252 LVE-SIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHh-hhhcCCCHHHHHHHHHHcCCcccc
Confidence 111 112445789999999999999986
No 27
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=3e-15 Score=136.10 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=105.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~~l 257 (354)
++.+|||||||+|.++..+++ ++.+++++|. +++++.++. ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 457999999999999998876 4679999999 888888764 2479999999876 433 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc-HHhhcc--c-CCcccCCHHHHHHHHHHc
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD-MVMMAH--T-NKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-l~~~~~--~-~~g~~~t~~e~~~ll~~a 333 (354)
||+++.. .+|++++++||| ||.+++.+....... +........ +..+.. + ...+.++.+|+..+++++
T Consensus 209 eHv~d~~--~~L~~l~r~LkP-GG~liist~nr~~~~-----~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP-NGATVLSTINRTMRA-----YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC-CcEEEEEECCcCHHH-----HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence 9998764 899999999999 999998865322100 000000000 000111 0 112467999999999999
Q ss_pred CCceeEEEEc
Q 018565 334 GFSRYNITSI 343 (354)
Q Consensus 334 Gf~~~~~~~~ 343 (354)
||+++++.-+
T Consensus 281 Gf~i~~~~G~ 290 (322)
T PLN02396 281 SVDVKEMAGF 290 (322)
T ss_pred CCeEEEEeee
Confidence 9999988443
No 28
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.61 E-value=2.5e-15 Score=124.12 Aligned_cols=136 Identities=22% Similarity=0.167 Sum_probs=95.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC---CCCcceEEEeccccccCChH
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD---GVPEADAAIIKWVLHDWGDD 263 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~~D~i~~~~~lh~~~~~ 263 (354)
.+..+|||||||+|.++..+.+.. .+++++|+ +.+++. ..+.....+... +...||+|+++.++|++++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d- 93 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD- 93 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc-
Confidence 467899999999999999996653 39999999 777766 222233222222 2345999999999999996
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
...+|+++++.||| ||.+++.++....... . ............ .....++.++|..+++++||++++
T Consensus 94 -~~~~l~~l~~~Lkp-gG~l~~~~~~~~~~~~-~-----~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 -PEEFLKELSRLLKP-GGYLVISDPNRDDPSP-R-----SFLKWRYDRPYG-GHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp -HHHHHHHHHHCEEE-EEEEEEEEEBTTSHHH-H-----HHHHCCGTCHHT-TTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred -HHHHHHHHHHhcCC-CCEEEEEEcCCcchhh-h-----HHHhcCCcCccC-ceeccCCHHHHHHHHHHCCCEEEE
Confidence 56999999999999 9999998876532111 0 000011111000 234677999999999999999886
No 29
>PRK06922 hypothetical protein; Provisional
Probab=99.60 E-value=1.1e-14 Score=140.71 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=109.8
Q ss_pred CChhHHHhhChHHHHHHHHHhhhchhhh--HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH
Q 018565 148 KDVWSYAAADAAHSKLINDAMACDTRLA--MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHV 224 (354)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 224 (354)
..+|+++...++...+|.+.|....... .......++ +.++.+|||||||+|..+..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 3678888888877777776665432211 111122333 44678999999999999999999999999999999 888
Q ss_pred hhhccc-----CCCeEEeecCCCC-C--CC--cceEEEeccccccC-----------ChHHHHHHHHHHHHhcCCCCceE
Q 018565 225 VCVAEK-----CHGVEHVGGDMFD-G--VP--EADAAIIKWVLHDW-----------GDDECIKILKNCKEAITKDKGKV 283 (354)
Q Consensus 225 ~~~a~~-----~~~v~~~~~d~~~-~--~~--~~D~i~~~~~lh~~-----------~~~~~~~~L~~~~~~L~p~gG~l 283 (354)
++.+++ ..+++++.+|..+ + ++ +||+|+++.++|+| +++...++|++++++||| ||++
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP-GGrL 533 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP-GGRI 533 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC-CcEE
Confidence 887764 3567888899876 3 33 49999999999976 345778999999999999 9999
Q ss_pred EEEeeeeCCC
Q 018565 284 IIVEAIIEED 293 (354)
Q Consensus 284 li~e~~~~~~ 293 (354)
++.|.+.++.
T Consensus 534 II~D~v~~E~ 543 (677)
T PRK06922 534 IIRDGIMTED 543 (677)
T ss_pred EEEeCccCCc
Confidence 9999766543
No 30
>PRK08317 hypothetical protein; Provisional
Probab=99.59 E-value=5.4e-14 Score=123.90 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=111.0
Q ss_pred HHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC--cc
Q 018565 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP--EA 248 (354)
Q Consensus 179 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~~ 248 (354)
+++.+. ..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..++++..+|+.+ +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344444 6677899999999999999999987 7889999999 777776654 4679999999877 543 49
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcch-hhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKF-KSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
|+|++.++++++++. ..++++++++|+| ||.+++.+........ .... ......... +.. ......+..+|.
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~-gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~ 161 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP-GGRVVVLDTDWDTLVW-HSGDRALMRKILNF--WSD-HFADPWLGRRLP 161 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC-CcEEEEEecCCCceee-cCCChHHHHHHHHH--HHh-cCCCCcHHHHHH
Confidence 999999999998765 4789999999999 9999998854322111 0000 001111111 111 122344567899
Q ss_pred HHHHHcCCceeEEEEc
Q 018565 328 YVLRQAGFSRYNITSI 343 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~ 343 (354)
++++++||+.+++...
T Consensus 162 ~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 162 GLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHcCCCceeEEEE
Confidence 9999999998766443
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=1.7e-14 Score=128.45 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=105.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--CCC--cceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--GVP--EADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~~~--~~D~i~~~~~ 256 (354)
...+|||+|||+|.++..+++. +.+++++|+ +++++.+++ .++++++.+|+.+ +.+ .||+|++..+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4579999999999999999986 578999999 899988765 3578999998865 232 4999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc----chhhhhhhccH-HhhcccCCcccCCHHHHHHHHH
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN----KFKSVRLMLDM-VMMAHTNKGKERSLKEWDYVLR 331 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~g~~~t~~e~~~ll~ 331 (354)
+|+++++. .+|+++.++||| ||.+++.......... .. .+......+.. ..... ......+.+++.++++
T Consensus 122 l~~~~~~~--~~l~~~~~~Lkp-gG~l~i~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~l~~~l~ 196 (255)
T PRK11036 122 LEWVADPK--SVLQTLWSVLRP-GGALSLMFYNANGLLM-HNMVAGNFDYVQAGMPKRKKRTL-SPDYPLDPEQVYQWLE 196 (255)
T ss_pred HHhhCCHH--HHHHHHHHHcCC-CeEEEEEEECccHHHH-HHHHccChHHHHhcCccccccCC-CCCCCCCHHHHHHHHH
Confidence 99987654 889999999999 9999886543211000 00 00000000000 00000 1123457899999999
Q ss_pred HcCCceeEEEEcCCce
Q 018565 332 QAGFSRYNITSIHAVQ 347 (354)
Q Consensus 332 ~aGf~~~~~~~~~~~~ 347 (354)
++||+++++.-+..+.
T Consensus 197 ~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 197 EAGWQIMGKTGVRVFH 212 (255)
T ss_pred HCCCeEeeeeeEEEEe
Confidence 9999998776554443
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.57 E-value=6.2e-14 Score=119.52 Aligned_cols=140 Identities=14% Similarity=0.048 Sum_probs=103.6
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cce
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EAD 249 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D 249 (354)
.+.+.+. ..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ .-.+.+...|+.. +.+ .||
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 4444444 445689999999999999999985 578999999 888876653 2246777778765 433 599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHH
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYV 329 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~l 329 (354)
+|+++.++|+++.+....++++++++|+| ||.+++++....+... .. . ......+.+|+.++
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lli~~~~~~~~~~-~~---------------~-~~~~~~~~~el~~~ 158 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRP-GGYNLIVAAMDTADYP-CH---------------M-PFSFTFKEDELRQY 158 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCC-CcEEEEEEecccCCCC-CC---------------C-CcCccCCHHHHHHH
Confidence 99999999999888888999999999999 9998887754332211 00 0 11124578999988
Q ss_pred HHHcCCceeEEE
Q 018565 330 LRQAGFSRYNIT 341 (354)
Q Consensus 330 l~~aGf~~~~~~ 341 (354)
|+ +|+++...
T Consensus 159 f~--~~~~~~~~ 168 (195)
T TIGR00477 159 YA--DWELLKYN 168 (195)
T ss_pred hC--CCeEEEee
Confidence 86 58877765
No 33
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.57 E-value=4.5e-14 Score=122.86 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=117.5
Q ss_pred hhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhc
Q 018565 150 VWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVA 228 (354)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 228 (354)
.|+.+..+++....+...|..........++..+.....+..+|||+|||+|.++..+++. +.+++++|+ ++++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 3444444434344444444322222333333333311235789999999999999999875 458999999 8898887
Q ss_pred cc-------CCCeEEeecCCCCCCCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchh
Q 018565 229 EK-------CHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFK 301 (354)
Q Consensus 229 ~~-------~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~ 301 (354)
++ ..++++..+|+.+..+.||+|++..++++++.+....+++++.+.+++ ++.+.+. +.... ..
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~-~~~i~~~----~~~~~----~~ 164 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE-RVIFTFA----PKTAW----LA 164 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC-CEEEEEC----CCchH----HH
Confidence 64 248999999988743679999999999999887788999999998887 5433321 11111 00
Q ss_pred hhhhhccHHhhcc--cCCcccCCHHHHHHHHHHcCCceeEEEEcCC
Q 018565 302 SVRLMLDMVMMAH--TNKGKERSLKEWDYVLRQAGFSRYNITSIHA 345 (354)
Q Consensus 302 ~~~~~~~l~~~~~--~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 345 (354)
....+.-..... ...-..++.+++.++++++||+++.......
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 165 -FLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVST 209 (219)
T ss_pred -HHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccc
Confidence 000000000000 0112345899999999999999998876643
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=1.3e-13 Score=123.16 Aligned_cols=106 Identities=17% Similarity=0.281 Sum_probs=90.3
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-C-CCcceEE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-G-VPEADAA 251 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~-~~~~D~i 251 (354)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++..+|+.+ . .++||+|
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 345666666 66778999999999999999999999999999999 889988876 5678999999876 2 2359999
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+++.++|++++. .+++++++++||| ||.+++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~Lkp-gG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLAP-GGVLAVQ 129 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcCC-CcEEEEE
Confidence 999999988764 4899999999999 9998885
No 35
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.55 E-value=2.6e-14 Score=106.91 Aligned_cols=88 Identities=25% Similarity=0.353 Sum_probs=76.3
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCCc--ceEEEeccccccCChHHHH
Q 018565 194 VDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVPE--ADAAIIKWVLHDWGDDECI 266 (354)
Q Consensus 194 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~~--~D~i~~~~~lh~~~~~~~~ 266 (354)
||+|||+|..+..++++ +..+++++|. +++++.+++ ..++++..+|+.+ ++++ ||+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999998 8899999999 888888776 5667799999988 7663 9999999999998 4556
Q ss_pred HHHHHHHHhcCCCCceEEE
Q 018565 267 KILKNCKEAITKDKGKVII 285 (354)
Q Consensus 267 ~~L~~~~~~L~p~gG~lli 285 (354)
+++++++++||| ||+++|
T Consensus 78 ~~l~e~~rvLk~-gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP-GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE-EEEEEE
T ss_pred HHHHHHHHHcCc-CeEEeC
Confidence 999999999999 999875
No 36
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.53 E-value=6.9e-14 Score=114.53 Aligned_cols=137 Identities=26% Similarity=0.426 Sum_probs=100.7
Q ss_pred CCceEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--C-CcceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLT-KAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--V-PEADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~-~~~D~i~~~~~ 256 (354)
...+|||+|||+|.++..++ +.+|+.+++++|+ +++++.++. .++++|..+|+.+ + + ..||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56899999999999999999 5688999999999 999998875 4589999999999 5 4 36999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhh-hccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRL-MLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
+|++++.. .+++++.+.|++ +|.+++.+........ . ....... ......+. ..+. +.++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~-~G~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP-GGILIISDPNHNDELP-E-QLEELMNLYSEVWSMI--YIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE-EEEEEEEEEEHSHHHH-H-HHHHHHHHHHHHHHHC--C-----CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCC-CcEEEEEECChHHHHH-H-HHHHHHHHHHHHhhhh--hccc--CHHHHHHHHHhcC
Confidence 99988764 889999999999 9999998877221110 0 0110111 01111111 1112 7889999999998
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.53 E-value=4.4e-13 Score=117.71 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=102.7
Q ss_pred CCCceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CC--CcceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKA----FPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GV--PEADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~--~~~D~i~~~~~ 256 (354)
.+..+|||||||+|.++..+++. .|+.+++++|+ +++++.+++ ..++++...+... +. ..||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46689999999999998888753 46679999999 999988875 2456666654433 22 35999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh---cccCC-----cccCCHHHHHH
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM---AHTNK-----GKERSLKEWDY 328 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~-----g~~~t~~e~~~ 328 (354)
+||+++++..++|++++++++ |.+++.+...+.... . .......... ..... -+.++.+|+.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~---~~~~i~dl~~~~~~~-----~-~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR---RLVLHNDLIRSRLAY-----A-LFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC---eeEEEeccccCHHHH-----H-HHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 999998888899999999986 356666655432110 0 0000000000 00011 24679999999
Q ss_pred HHHHcCCceeEEEEcCC
Q 018565 329 VLRQAGFSRYNITSIHA 345 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~~ 345 (354)
++++ ||++...++...
T Consensus 210 ll~~-Gf~~~~~~~~~~ 225 (232)
T PRK06202 210 LAPQ-GWRVERQWPFRY 225 (232)
T ss_pred HhhC-CCeEEeccceee
Confidence 9999 999988877653
No 38
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.51 E-value=2.4e-13 Score=112.60 Aligned_cols=164 Identities=15% Similarity=0.190 Sum_probs=121.5
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC--CCCcceEE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD--GVPEADAA 251 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~--~~~~~D~i 251 (354)
+..++..++ .....+|+|+|||+|..+..|++++|..+++++|. ++|++.|+. ..+++|..+|+.+ |-++.|++
T Consensus 19 a~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 19 ARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 356677777 77889999999999999999999999999999999 999999876 7899999999988 44469999
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH--------Hhhc--ccCCcccC
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM--------VMMA--HTNKGKER 321 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l--------~~~~--~~~~g~~~ 321 (354)
+.+.+||-+++. .++|.++...|.| ||.|.+.= |++.. .+ . +..+.+. .+.. . ......
T Consensus 97 faNAvlqWlpdH--~~ll~rL~~~L~P-gg~LAVQm---PdN~d-ep-s--H~~mr~~A~~~p~~~~l~~~~~-~r~~v~ 165 (257)
T COG4106 97 FANAVLQWLPDH--PELLPRLVSQLAP-GGVLAVQM---PDNLD-EP-S--HRLMRETADEAPFAQELGGRGL-TRAPLP 165 (257)
T ss_pred hhhhhhhhcccc--HHHHHHHHHhhCC-CceEEEEC---CCccC-ch-h--HHHHHHHHhcCchhhhhCcccc-ccCCCC
Confidence 999999987765 4899999999999 99888743 33322 21 1 1111111 1111 1 123445
Q ss_pred CHHHHHHHHHHcCCceeEEEEc------CCceeEEEEe
Q 018565 322 SLKEWDYVLRQAGFSRYNITSI------HAVQSLIEAF 353 (354)
Q Consensus 322 t~~e~~~ll~~aGf~~~~~~~~------~~~~~~i~~~ 353 (354)
+...+-++|...+-+ +++|+. ++...||+..
T Consensus 166 s~a~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 166 SPAAYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred CHHHHHHHhCcccce-eeeeeeeccccCCCccchhhhe
Confidence 899999999988744 455543 4556666654
No 39
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.51 E-value=2.6e-13 Score=119.03 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=101.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCcceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPEADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~D~i~~~~~lh~ 259 (354)
.+..+|||||||+|.++..+++.. .+++++|+ +.++..+++ .+++++..+|+....+.||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456899999999999999998874 46999999 888887765 24799999995444456999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHh-hcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVM-MAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
++++....+++++.+.+++ |.++... +.... ............ ...+......+.++|.++++++||++.
T Consensus 140 ~~~~~~~~~l~~l~~~~~~--~~~i~~~---~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 210 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG--SLIFTFA---PYTPL----LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVV 210 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC--eEEEEEC---CccHH----HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceE
Confidence 9998889999999987654 3333321 11100 000000000000 000022345578999999999999999
Q ss_pred EEEEcCC
Q 018565 339 NITSIHA 345 (354)
Q Consensus 339 ~~~~~~~ 345 (354)
++.++..
T Consensus 211 ~~~~~~~ 217 (230)
T PRK07580 211 RTERISS 217 (230)
T ss_pred eeeeccc
Confidence 9988754
No 40
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.51 E-value=4.3e-13 Score=125.54 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=115.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCCCCCcceEEE
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFDGVPEADAAI 252 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~~~~~~D~i~ 252 (354)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ ...+++...|+.+..+.||+|+
T Consensus 157 ~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 34455555 6678899999999999999998875 679999999 888888765 3357888888765334699999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHH
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQ 332 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~ 332 (354)
+..++++.++.....++++++++||| ||.+++.+...+.... . ...+.+. ... ++|...+.+++...++
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~Lkp-GG~lvl~~i~~~~~~~-~-----~~~~i~~--yif-p~g~lps~~~i~~~~~- 302 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKP-DGLFLLHTIGSNKTDT-N-----VDPWINK--YIF-PNGCLPSVRQIAQASE- 302 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCC-CcEEEEEEccCCCCCC-C-----CCCCcee--eec-CCCcCCCHHHHHHHHH-
Confidence 99999998887778999999999999 9999998765443221 1 0111111 223 5677788999888766
Q ss_pred cCCceeEEEEcC
Q 018565 333 AGFSRYNITSIH 344 (354)
Q Consensus 333 aGf~~~~~~~~~ 344 (354)
.||.+.++..++
T Consensus 303 ~~~~v~d~~~~~ 314 (383)
T PRK11705 303 GLFVMEDWHNFG 314 (383)
T ss_pred CCcEEEEEecCh
Confidence 589988876654
No 41
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=7.6e-13 Score=117.63 Aligned_cols=147 Identities=13% Similarity=0.102 Sum_probs=104.3
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC--cceE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP--EADA 250 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~ 250 (354)
...+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.++. ...+.++.+|+.+ +++ .||+
T Consensus 31 a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 31 ADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence 345555555 345689999999999998888764 578999999 899988875 3446788899987 554 4999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHH
Q 018565 251 AIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVL 330 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll 330 (354)
|+++.++|..++. ..+|++++++|+| ||.+++.......... . ...+..+. ... ......+.+++..++
T Consensus 107 V~s~~~l~~~~d~--~~~l~~~~~~Lk~-gG~l~~~~~~~~~~~e----l--~~~~~~~~-~~~-~~~~~~~~~~l~~~l 175 (251)
T PRK10258 107 AWSNLAVQWCGNL--STALRELYRVVRP-GGVVAFTTLVQGSLPE----L--HQAWQAVD-ERP-HANRFLPPDAIEQAL 175 (251)
T ss_pred EEECchhhhcCCH--HHHHHHHHHHcCC-CeEEEEEeCCCCchHH----H--HHHHHHhc-cCC-ccccCCCHHHHHHHH
Confidence 9999999875553 5899999999999 9999987654322111 1 00110000 001 223456899999999
Q ss_pred HHcCCce
Q 018565 331 RQAGFSR 337 (354)
Q Consensus 331 ~~aGf~~ 337 (354)
+..|+..
T Consensus 176 ~~~~~~~ 182 (251)
T PRK10258 176 NGWRYQH 182 (251)
T ss_pred HhCCcee
Confidence 9888764
No 42
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.50 E-value=9.1e-15 Score=110.69 Aligned_cols=87 Identities=26% Similarity=0.379 Sum_probs=58.8
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CC---CeEEeecCCCCC-CC-cceEEEeccccccCC
Q 018565 194 VDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CH---GVEHVGGDMFDG-VP-EADAAIIKWVLHDWG 261 (354)
Q Consensus 194 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~---~v~~~~~d~~~~-~~-~~D~i~~~~~lh~~~ 261 (354)
||||||+|.++..+++++|..+++++|+ +.+++.+++ .. ++++...|..+. .+ .||+|++.+++|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 899977765 12 344444555542 33 699999999999994
Q ss_pred hHHHHHHHHHHHHhcCCCCceE
Q 018565 262 DDECIKILKNCKEAITKDKGKV 283 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~l 283 (354)
+...+++++++.|+| ||.|
T Consensus 81 --~~~~~l~~~~~~L~p-gG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKP-GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS-S-EE
T ss_pred --hHHHHHHHHHHHcCC-CCCC
Confidence 456999999999999 9975
No 43
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.48 E-value=3.9e-13 Score=119.80 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=82.5
Q ss_pred CCCceEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHhhhcccC--------------------------
Q 018565 188 DGIETLVDIGGNDGT----TLRTLTKAFP-----RIRGINFDL-PHVVCVAEKC-------------------------- 231 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 231 (354)
.+..+|+|+|||+|. ++..+.+.++ +.+++++|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 4555666554 578999999 8999887751
Q ss_pred -------CCeEEeecCCCC-CCC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 232 -------HGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 232 -------~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+|+|..+|+.+ +.+ +||+|+|.+++|+++++...+++++++++|+| ||.|++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p-GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP-GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC-CeEEEEEC
Confidence 378999999998 332 49999999999999988889999999999999 99999853
No 44
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.47 E-value=6.2e-14 Score=119.70 Aligned_cols=142 Identities=16% Similarity=0.129 Sum_probs=105.6
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CC----CeEEeecCCCCCCCcceEEEeccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CH----GVEHVGGDMFDGVPEADAAIIKWV 256 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----~v~~~~~d~~~~~~~~D~i~~~~~ 256 (354)
+.+|||||||.|.++..|++. +.+++++|. +.+++.|++ .. |+++...|.....+.||+|+|..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 478999999999999999998 578999999 889988875 22 477777777776666999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCC----cccCCHHHHHHHHHH
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNK----GKERSLKEWDYVLRQ 332 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----g~~~t~~e~~~ll~~ 332 (354)
++|..+. ..+++.+.+.||| +|+++|.+....-... .. .....+........| .+..++++...++..
T Consensus 168 leHV~dp--~~~l~~l~~~lkP-~G~lfittinrt~lS~-~~----~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP-NGRLFITTINRTILSF-AG----TIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC-CCceEeeehhhhHHHh-hc----cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh
Confidence 9997655 4899999999999 9999998865543222 10 111111111111012 245689999999999
Q ss_pred cCCceeEEE
Q 018565 333 AGFSRYNIT 341 (354)
Q Consensus 333 aGf~~~~~~ 341 (354)
+|+++..+.
T Consensus 240 ~~~~v~~v~ 248 (282)
T KOG1270|consen 240 NGAQVNDVV 248 (282)
T ss_pred cCcchhhhh
Confidence 999887764
No 45
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.47 E-value=5.7e-13 Score=117.38 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=103.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCC-CCC--cceEEEeccccccCCh
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGD 262 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~ 262 (354)
...+|||+|||+|.++..+++.+|..+++++|+ +.++..++. .++++++.+|+.+ +++ .||+|++..++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 347899999999999999999999999999999 777776664 3578999999987 543 4999999999998765
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEE
Q 018565 263 DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNIT 341 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 341 (354)
. .++|++++++|+| ||.+++.++....... . .... .. ......+.++|.++++++ |+...+.
T Consensus 114 ~--~~~l~~~~~~L~~-~G~l~~~~~~~~~~~~-------~---~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLKP-GGLLAFSTFGPGTLHE-------L---RQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcCC-CcEEEEEeCCccCHHH-------H---HHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 5899999999999 9999987643221100 0 0110 00 223456789999999998 8776553
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=9.9e-13 Score=119.01 Aligned_cols=131 Identities=16% Similarity=0.062 Sum_probs=100.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cceEEEeccccccC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDW 260 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~ 260 (354)
...+|||+|||+|..+..+++. +.+++++|. +.+++.+++ ..++++...|+.+ +.+ .||+|++..++|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4469999999999999999885 579999999 788776653 3468888888876 344 49999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 340 (354)
+++....+++++.++|+| ||.+++++....+... .+ . .....++.+|+.++++. |++++.
T Consensus 198 ~~~~~~~~l~~~~~~Lkp-gG~~l~v~~~~~~~~~-~~---------------~-p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNP-GGYNLIVCAMDTEDYP-CP---------------M-PFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CHHHHHHHHHHHHHhcCC-CcEEEEEEecccccCC-CC---------------C-CCCcccCHHHHHHHhCC--CEEEEE
Confidence 888889999999999999 9998887654332221 10 0 11234578999999965 888876
Q ss_pred E
Q 018565 341 T 341 (354)
Q Consensus 341 ~ 341 (354)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 4
No 47
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.47 E-value=1.1e-13 Score=117.49 Aligned_cols=143 Identities=15% Similarity=0.107 Sum_probs=105.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CC--CcceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GV--PEADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~--~~~D~i~~~~~lh~ 259 (354)
...+|||||||.|.++..+++. +.+++++|+ ++.++.|+. .-.+++...+..+ .. ..||+|+|..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 5789999999999999999998 589999999 888888874 2335576666665 22 46999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc---HHhhcc--c-CCcccCCHHHHHHHHHHc
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD---MVMMAH--T-NKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~---l~~~~~--~-~~g~~~t~~e~~~ll~~a 333 (354)
.++++ .+++++.+.+|| ||.++++...+..... ...... +..+.. | .-.+...++|+..++.++
T Consensus 137 v~dp~--~~~~~c~~lvkP-~G~lf~STinrt~ka~-------~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~ 206 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP-GGILFLSTINRTLKAY-------LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGA 206 (243)
T ss_pred cCCHH--HHHHHHHHHcCC-CcEEEEeccccCHHHH-------HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccC
Confidence 99886 699999999999 9999988765432211 111111 111111 0 112455789999999999
Q ss_pred CCceeEEEEc
Q 018565 334 GFSRYNITSI 343 (354)
Q Consensus 334 Gf~~~~~~~~ 343 (354)
|+.+.....+
T Consensus 207 ~~~~~~~~g~ 216 (243)
T COG2227 207 NLKIIDRKGL 216 (243)
T ss_pred CceEEeecce
Confidence 9998887554
No 48
>PRK05785 hypothetical protein; Provisional
Probab=99.47 E-value=1.7e-12 Score=113.08 Aligned_cols=154 Identities=11% Similarity=0.098 Sum_probs=104.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDE 264 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~ 264 (354)
+..+|||||||+|..+..+++.+ +.+++++|+ ++|++.++.. ..++.+|+.+ |++ .||+|++..++|++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46799999999999999999887 579999999 9999998753 3467788887 665 39999999999998765
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc--HHhh--cccCC-----------cccCCHHHHHHH
Q 018565 265 CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD--MVMM--AHTNK-----------GKERSLKEWDYV 329 (354)
Q Consensus 265 ~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~--l~~~--~~~~~-----------g~~~t~~e~~~l 329 (354)
.+++++++++||| . +.++|...++... .... ...++. +..+ ..+.+ ....+.+++.++
T Consensus 127 -~~~l~e~~RvLkp-~--~~ile~~~p~~~~-~~~~--~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~ 199 (226)
T PRK05785 127 -EKVIAEFTRVSRK-Q--VGFIAMGKPDNVI-KRKY--LSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREI 199 (226)
T ss_pred -HHHHHHHHHHhcC-c--eEEEEeCCCCcHH-HHHH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 4899999999998 4 4455654443221 0000 000000 0000 01011 123478999999
Q ss_pred HHHcCCceeEEEEcCCc-eeEEEEeC
Q 018565 330 LRQAGFSRYNITSIHAV-QSLIEAFP 354 (354)
Q Consensus 330 l~~aGf~~~~~~~~~~~-~~~i~~~~ 354 (354)
++++| ..++..++... ..+..++|
T Consensus 200 ~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 200 FEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHh-CceEEEEccccEEEEEEEee
Confidence 99984 66777777544 44555543
No 49
>PLN03075 nicotianamine synthase; Provisional
Probab=99.47 E-value=8.8e-13 Score=117.33 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=80.0
Q ss_pred CCceEEEecCCccHHHH-HH-HHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCCCC---CcceEEEec
Q 018565 189 GIETLVDIGGNDGTTLR-TL-TKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFDGV---PEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~-~l-~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~~~---~~~D~i~~~ 254 (354)
++.+|+|||||.|.++. .+ .+.+|+.+++++|. +++++.|++ .++++|..+|..+.. .+||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 67999999999884433 33 35689999999999 888887764 468999999998732 469999999
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
++|+|+.+...++|+++++.|+| ||.+++-
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkP-GG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAP-GALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCC-CcEEEEe
Confidence 99999877778999999999999 9988873
No 50
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.46 E-value=8.4e-13 Score=128.12 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=110.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC---CCC--
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD---GVP-- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~---~~~-- 246 (354)
..+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +++++.++. .++++++.+|+.+ +++
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 44455555 4456799999999999999999874 47899999 888876653 4679999999864 344
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
+||+|++..++|+++++...+++++++++||| ||.+++.|........ . . . . . .....++..+|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~-gG~l~~~d~~~~~~~~-~-----~-~------~-~-~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV-GGYIFFRESCFHQSGD-S-----K-R------K-N-NPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC-CeEEEEEeccCCCCCc-c-----c-c------c-C-CCCeecChHHH
Confidence 49999999999999998889999999999999 9999999876554322 1 0 0 0 0 22344568899
Q ss_pred HHHHHHcCCceeE
Q 018565 327 DYVLRQAGFSRYN 339 (354)
Q Consensus 327 ~~ll~~aGf~~~~ 339 (354)
.+++.++||....
T Consensus 167 ~~~f~~~~~~~~~ 179 (475)
T PLN02336 167 TKVFKECHTRDED 179 (475)
T ss_pred HHHHHHheeccCC
Confidence 9999999998764
No 51
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.46 E-value=5.6e-13 Score=121.27 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=78.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC--CC-cc-----eEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG--VP-EA-----DAA 251 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~--~~-~~-----D~i 251 (354)
++.+|||+|||+|..+..++++.+ ..+++++|+ +++++.+.+ ..++.++.+|+.+. .+ ++ .++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 457899999999999999999887 689999999 888877653 23466788999872 22 22 345
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
++.+.+++++++++..+|++++++|+| ||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~p-gG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGP-GGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCC-CCEEEE
Confidence 666889999999999999999999999 999886
No 52
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.46 E-value=2.9e-12 Score=110.31 Aligned_cols=132 Identities=11% Similarity=0.029 Sum_probs=101.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------------CCCeEEeecCCCC-C---
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------CHGVEHVGGDMFD-G--- 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~--- 244 (354)
.+..+|||+|||.|..+..|+++ +.+++++|+ +..++.+.. ..+|++..+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 789999999 777776411 3479999999998 4
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHH
Q 018565 245 VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLK 324 (354)
Q Consensus 245 ~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~ 324 (354)
.+.||.|+-+.++|+++.+.....++++.++||| ||.+++.....++... . +.....+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp-gG~~ll~~~~~~~~~~-~------------------gpp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP-GARQLLITLDYDQSEM-A------------------GPPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC-CCeEEEEEEEcCCCCC-C------------------CcCCCCCHH
Confidence 2359999999999999999999999999999999 9988887765533211 0 001235788
Q ss_pred HHHHHHHHcCCceeEEEE
Q 018565 325 EWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 325 e~~~ll~~aGf~~~~~~~ 342 (354)
++.++|+. +|.+..+.+
T Consensus 171 eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 171 EVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHhcC-CceEEEEee
Confidence 99988864 455554443
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.46 E-value=2.5e-13 Score=103.17 Aligned_cols=88 Identities=26% Similarity=0.422 Sum_probs=74.4
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CC--CcceEEEec-ccccc
Q 018565 193 LVDIGGNDGTTLRTLTKAF---PRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GV--PEADAAIIK-WVLHD 259 (354)
Q Consensus 193 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~--~~~D~i~~~-~~lh~ 259 (354)
|||+|||+|..+..+.+.+ |..+++++|+ +++++.+++ ..+++++..|+.+ ++ ++||+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999986 5689999999 999988875 3589999999988 43 359999995 55999
Q ss_pred CChHHHHHHHHHHHHhcCCCCc
Q 018565 260 WGDDECIKILKNCKEAITKDKG 281 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG 281 (354)
+++++..++++++.+.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p-gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP-GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE-EE
T ss_pred CCHHHHHHHHHHHHHHhCC-CC
Confidence 9999999999999999999 87
No 54
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=2.5e-12 Score=111.54 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=97.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhc----ccCCCeEEeecCCCCC-----C-CcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVA----EKCHGVEHVGGDMFDG-----V-PEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~d~~~~-----~-~~~D~i~~~~ 255 (354)
..++.+|||+|||+|.++..+++..+..+++++|+ +++++.+ +...++.++.+|..++ + ..+|+|++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d- 148 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD- 148 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC-
Confidence 66788999999999999999999887668999999 7766643 3346789999998653 1 248998843
Q ss_pred ccccCChH-HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 256 VLHDWGDD-ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 256 ~lh~~~~~-~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
.+++ ....+|+++++.||| ||+++|.=...+-+.. . .. . +..++..++++++|
T Consensus 149 ----~~~p~~~~~~L~~~~r~LKp-GG~lvI~v~~~~~d~~-~------------------~~-~-~~~~~~~~~l~~aG 202 (226)
T PRK04266 149 ----VAQPNQAEIAIDNAEFFLKD-GGYLLLAIKARSIDVT-K------------------DP-K-EIFKEEIRKLEEGG 202 (226)
T ss_pred ----CCChhHHHHHHHHHHHhcCC-CcEEEEEEecccccCc-C------------------CH-H-HHHHHHHHHHHHcC
Confidence 3322 334678999999999 9999995211111111 0 00 0 11244569999999
Q ss_pred CceeEEEEcCCc---eeEEEEe
Q 018565 335 FSRYNITSIHAV---QSLIEAF 353 (354)
Q Consensus 335 f~~~~~~~~~~~---~~~i~~~ 353 (354)
|+.++...+... +..+.++
T Consensus 203 F~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 203 FEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred CeEEEEEcCCCCcCCeEEEEEE
Confidence 999999887433 5555544
No 55
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=3.2e-12 Score=107.64 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=104.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCCcceEEEeccccccCC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVPEADAAIIKWVLHDWG 261 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~~~D~i~~~~~lh~~~ 261 (354)
+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ ..+.||+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999876 8999999 888887764 3468889999887 334699999998887665
Q ss_pred hH-------------------HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCC
Q 018565 262 DD-------------------ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERS 322 (354)
Q Consensus 262 ~~-------------------~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t 322 (354)
++ ...++++++.++|+| ||++++++.... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~-gG~~~~~~~~~~------------------------------~ 145 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE-GGRVQLIQSSLN------------------------------G 145 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC-CCEEEEEEeccC------------------------------C
Confidence 32 135789999999999 999998663211 1
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 323 LKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
..++.+++++.||+...+..-+.++--+.++|
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 56778889999999998888777776666654
No 56
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.44 E-value=1.1e-12 Score=107.88 Aligned_cols=155 Identities=18% Similarity=0.198 Sum_probs=108.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeE-EeecCCCC-C-CC--cceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVE-HVGGDMFD-G-VP--EADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~-~~~~d~~~-~-~~--~~D~i~~~~ 255 (354)
+....||+||||+|..-...- --|..++|.+|. ++|-+.+.+ ...+. |+.++-.+ + .+ ++|+|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 445678999999998754432 236889999999 777776543 45566 78887777 4 33 599999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
+|....+ ..+.|++++++|+| ||++++.|++..+... .... .....+-..... ..|-..|.+.| +.|+++-|
T Consensus 154 vLCSve~--~~k~L~e~~rlLRp-gG~iifiEHva~~y~~-~n~i--~q~v~ep~~~~~-~dGC~ltrd~~-e~Leda~f 225 (252)
T KOG4300|consen 154 VLCSVED--PVKQLNEVRRLLRP-GGRIIFIEHVAGEYGF-WNRI--LQQVAEPLWHLE-SDGCVLTRDTG-ELLEDAEF 225 (252)
T ss_pred EEeccCC--HHHHHHHHHHhcCC-CcEEEEEecccccchH-HHHH--HHHHhchhhhee-ccceEEehhHH-HHhhhccc
Confidence 9987554 56999999999999 9999999999877665 2100 111222211222 56777777776 57788899
Q ss_pred ceeEEEEcCC--ceeEEE
Q 018565 336 SRYNITSIHA--VQSLIE 351 (354)
Q Consensus 336 ~~~~~~~~~~--~~~~i~ 351 (354)
+..+...... .+.+|+
T Consensus 226 ~~~~~kr~~~~ttw~~V~ 243 (252)
T KOG4300|consen 226 SIDSCKRFNFGTTWVIVE 243 (252)
T ss_pred ccchhhcccCCceEEEEe
Confidence 9988766643 344444
No 57
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.43 E-value=1.4e-12 Score=111.63 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=87.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCCCCC--cceEEEeccccccCChH
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFDGVP--EADAAIIKWVLHDWGDD 263 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~~~~--~~D~i~~~~~lh~~~~~ 263 (354)
.+..+|||||||+|..+..+.+..|+.+++++|+ +++++.+++ ..++++..+|+.++++ .||+|++..++||++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 4567999999999999999999888999999999 899999876 5678889999888654 49999999999999888
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
...++++++.+++ ++.++|.|...+.
T Consensus 122 ~~~~~l~el~r~~---~~~v~i~e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCS---NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhc---CcEEEEEEeeCCC
Confidence 8889999999986 4588888876543
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.43 E-value=4.8e-12 Score=107.29 Aligned_cols=121 Identities=17% Similarity=0.313 Sum_probs=94.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC-cceEEEeccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP-EADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~-~~D~i~~~~~lh 258 (354)
..+..+|||||||+|.++..+++++|+.+++++|. +++++.+++ ..+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 55778999999999999999999999999999999 888887764 3578999998765444 599999876554
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
+ ...+++.+.+.|+| ||++++..... .+.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk~-gG~lv~~~~~~------------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLHP-GGRLVLTFILL------------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcCC-CeEEEEEEecH------------------------------hhHHHHHHHHHHCCCCcc
Confidence 3 34689999999999 99987743211 024566788999999877
Q ss_pred EEEEc
Q 018565 339 NITSI 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
++...
T Consensus 153 ~~~~~ 157 (187)
T PRK08287 153 DCVQL 157 (187)
T ss_pred eEEEE
Confidence 75443
No 59
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.41 E-value=5e-12 Score=111.28 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=103.6
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhc---cc----CCCeEEeecCCCC-C-CC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVA---EK----CHGVEHVGGDMFD-G-VP 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~----~~~v~~~~~d~~~-~-~~ 246 (354)
..+..+++ --.+++|||||||+|.++..++++.+. .++++|. +...... +. ..++.+...-+.+ + ..
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34444553 235689999999999999999998654 5899996 3222221 11 2334444333333 3 23
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
.||+|++..||+|..++ ...|+.+++.|+| ||.|++=..+.+.+.. ..-.+...+ . . |- ...-..|...+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~-gGeLvLETlvi~g~~~-~~L~P~~rY-a--~-m~--nv~FiPs~~~L 251 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP-GGELVLETLVIDGDEN-TVLVPEDRY-A--K-MR--NVWFIPSVAAL 251 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC-CCEEEEEEeeecCCCc-eEEccCCcc-c--C-CC--ceEEeCCHHHH
Confidence 49999999999997766 4889999999999 9999887777776544 210111111 0 0 00 11245689999
Q ss_pred HHHHHHcCCceeEEEEc
Q 018565 327 DYVLRQAGFSRYNITSI 343 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~ 343 (354)
..|++++||+.+++...
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999998765
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.39 E-value=3.6e-12 Score=106.68 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=96.1
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cce
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EAD 249 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D 249 (354)
.+.+.++ .-++.++||+|||.|..+..|+++ +..++++|. +..++.+++ .-.|+....|+.+ +++ .||
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 3444455 446789999999999999999998 789999999 666665443 4558889999988 554 499
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHH
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYV 329 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~l 329 (354)
+|++..++++++.+...++++++.+.++| ||.+++......++.. .+ . .....+...|+.+.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~p-GG~~li~~~~~~~d~p--~~-----~----------~~~f~~~~~EL~~~ 158 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKP-GGYNLIVTFMETPDYP--CP-----S----------PFPFLLKPGELREY 158 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEE-EEEEEEEEEB--SSS----S-----S------------S--B-TTHHHHH
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCC-cEEEEEEEecccCCCC--CC-----C----------CCCcccCHHHHHHH
Confidence 99999999999999999999999999999 9988886654332211 10 0 11123456788888
Q ss_pred HHHcCCceeEE
Q 018565 330 LRQAGFSRYNI 340 (354)
Q Consensus 330 l~~aGf~~~~~ 340 (354)
++ ||++++.
T Consensus 159 y~--dW~il~y 167 (192)
T PF03848_consen 159 YA--DWEILKY 167 (192)
T ss_dssp TT--TSEEEEE
T ss_pred hC--CCeEEEE
Confidence 75 5887764
No 61
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.38 E-value=7.3e-12 Score=110.05 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=99.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-C--C-CcceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-G--V-PEADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~--~-~~~D~i~~~~~l 257 (354)
.+..+|||||||+|.++..+.+. ..+++++|. +.++..+++ ..++++...|+.+ + . ..||+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35689999999999999888875 467999998 777766653 3457777777665 2 2 359999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
++.++. ..+|+.+.+.|+| ||.+++.......... .........................+.++|.++++++||++
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~-gG~l~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 200 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKP-GGLVFFSTLNRNLKSY-LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEV 200 (233)
T ss_pred hccCCH--HHHHHHHHHHcCC-CcEEEEEecCCChHHH-HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeE
Confidence 987764 4789999999999 9998876542111000 00000000000000000001234558999999999999999
Q ss_pred eEEEE
Q 018565 338 YNITS 342 (354)
Q Consensus 338 ~~~~~ 342 (354)
++...
T Consensus 201 v~~~~ 205 (233)
T PRK05134 201 QDITG 205 (233)
T ss_pred eeeee
Confidence 98754
No 62
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=2.4e-11 Score=104.97 Aligned_cols=132 Identities=10% Similarity=0.002 Sum_probs=101.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------------CCCeEEeecCCCCC----
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------CHGVEHVGGDMFDG---- 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~~---- 244 (354)
.+..+|||+|||.|..+..|+++ +.+++++|+ +..++.+.. ..+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 789999999 777775421 36789999999983
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHH
Q 018565 245 VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLK 324 (354)
Q Consensus 245 ~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~ 324 (354)
.+.||+|+-+.++|+++.+...+.++.+.++|+| ||.++++....++... . +.....+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p-gG~~~l~~~~~~~~~~-~------------------gPp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA-GCRGLLVTLDYPQEEL-A------------------GPPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC-CCeEEEEEEEeCCccC-C------------------CCCCCCCHH
Confidence 2358999999999999999999999999999999 9987776655543221 1 111245789
Q ss_pred HHHHHHHHcCCceeEEEE
Q 018565 325 EWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 325 e~~~ll~~aGf~~~~~~~ 342 (354)
|+.++++. +|.+..+..
T Consensus 174 el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 174 EVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHhcC-CceEEEeee
Confidence 99998863 366665544
No 63
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.36 E-value=4.4e-12 Score=115.12 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=95.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCCCCCcceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFDGVPEADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~~~~D~i~~~~~ 256 (354)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++|..+|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999986 578999999 889887764 13578888887653346999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcc--cCCcccCCHHHHHHHHHHcC
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAH--TNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~g~~~t~~e~~~ll~~aG 334 (354)
+||++++....+++.+.+ +.+ |.++|.. .+. .. . +.......... ... .......+.+++.++++++|
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~--g~liIs~--~p~-~~-~--~~~l~~~g~~~-~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE--KRLIISF--APK-TL-Y--YDILKRIGELF-PGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC--CEEEEEe--CCc-ch-H--HHHHHHHHhhc-CCCCcCceeeeCCHHHHHHHHHHCC
Confidence 999998877788888875 444 4555532 111 11 0 00000000000 000 00012337999999999999
Q ss_pred CceeEEEEcC
Q 018565 335 FSRYNITSIH 344 (354)
Q Consensus 335 f~~~~~~~~~ 344 (354)
|++.+..-..
T Consensus 292 f~v~~~~~~~ 301 (315)
T PLN02585 292 WKVARREMTA 301 (315)
T ss_pred CEEEEEEEee
Confidence 9988765443
No 64
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.36 E-value=7.2e-12 Score=105.41 Aligned_cols=138 Identities=18% Similarity=0.216 Sum_probs=98.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCC-eEEeecCCCC--CCC-cceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHG-VEHVGGDMFD--GVP-EADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-v~~~~~d~~~--~~~-~~D~i~~~~~lh 258 (354)
...+.||.|+|.|..+..++... --++-.+|. ++.++.|++ ..+ .++.+....+ |.+ .||+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 56899999999999999876543 235677777 788888874 223 3344443333 433 499999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
|++|++..++|++++++|+| +|.|+|=|.+...... .+|-. .++-.|+.+.|.++|++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~-~G~IvvKEN~~~~~~~----------~~D~~-----DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP-NGVIVVKENVSSSGFD----------EFDEE-----DSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE-EEEEEEEEEEESSSEE----------EEETT-----TTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCcC-CcEEEEEecCCCCCCc----------ccCCc-----cCeeecCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999 9999998888764321 11111 56678999999999999999999
Q ss_pred EEEEc
Q 018565 339 NITSI 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
+...-
T Consensus 198 ~~~~Q 202 (218)
T PF05891_consen 198 KEEKQ 202 (218)
T ss_dssp EEEE-
T ss_pred Eeccc
Confidence 86544
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=8.6e-12 Score=115.62 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=87.8
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCCCCC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFDGVP 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~~~ 246 (354)
+.+++.++ .....+|||+|||+|..+..+++++|+.+++++|. +.+++.++. ..++++..+|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 45566666 33446999999999999999999999999999999 777777764 1378999999987543
Q ss_pred --cceEEEecccccc---CChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 --EADAAIIKWVLHD---WGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 --~~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.||+|+++-.+|. +++..+.++++.+++.|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp-GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI-NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc-CCEEEEEE
Confidence 5999999866654 4556678999999999999 99999874
No 66
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.34 E-value=3.7e-12 Score=105.35 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=95.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCCCCC--cceEEEecccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFDGVP--EADAAIIKWVLHD 259 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~~--~~D~i~~~~~lh~ 259 (354)
.....+++|+|||.|.++..|+.++ -+.+++|. +..++.+++ .++|+++..|+-+..| .||+|+++.++|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4566899999999999999999985 47899999 888888875 5889999999988444 4999999999999
Q ss_pred CCh-HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 260 WGD-DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 260 ~~~-~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
+++ ++...+++++.++|+| ||.|++.... +.. -. ..|.....+.+.++|++. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p-gG~LV~g~~r-d~~-----------------c~---~wgh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP-GGHLVFGHAR-DAN-----------------CR---RWGHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE-EEEEEEEEE--HHH-----------------HH---HTT-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC-CCEEEEEEec-CCc-----------------cc---ccCcccchHHHHHHHHHH-hhhe
Confidence 986 6788999999999999 9999986642 100 00 223455678888888885 5555
Q ss_pred EEEEc
Q 018565 339 NITSI 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
+....
T Consensus 176 ~~~~~ 180 (201)
T PF05401_consen 176 ERVEC 180 (201)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55554
No 67
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.33 E-value=2.5e-11 Score=101.97 Aligned_cols=90 Identities=19% Similarity=0.167 Sum_probs=73.5
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C-CCcceEEEeccccccC
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G-VPEADAAIIKWVLHDW 260 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~-~~~~D~i~~~~~lh~~ 260 (354)
+.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ .++++++.+|+.+ + .++||+|++.. +++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS- 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC-
Confidence 67999999999999999998899999999999 777766543 3569999999987 3 24699998866 543
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...+++.+++.|+| ||.+++.
T Consensus 121 ----~~~~~~~~~~~Lkp-gG~lvi~ 141 (181)
T TIGR00138 121 ----LNVLLELTLNLLKV-GGYFLAY 141 (181)
T ss_pred ----HHHHHHHHHHhcCC-CCEEEEE
Confidence 23578888999999 9998875
No 68
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.32 E-value=9.6e-12 Score=105.00 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=108.6
Q ss_pred ceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC-----CC--cceEEEecc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPR--IRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG-----VP--EADAAIIKW 255 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~-----~~--~~D~i~~~~ 255 (354)
.+||+||||.|.+..-+++..|+ +.+...|. |..++..++ ..++.-...|+..+ .+ ..|.|++..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999998888 88999999 888888775 35565556666552 11 389999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcc---cCCHHHHHHHHHH
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGK---ERSLKEWDYVLRQ 332 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~---~~t~~e~~~ll~~ 332 (354)
+|...+++....++++++++||| ||.|++-|....+-.. - .+. ....++.+..+. +.|. .++.+++.+++.+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP-GG~llfrDYg~~Dlaq-l-RF~-~~~~i~~nfYVR-gDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP-GGSLLFRDYGRYDLAQ-L-RFK-KGQCISENFYVR-GDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC-CcEEEEeecccchHHH-H-hcc-CCceeecceEEc-cCCceeeeccHHHHHHHHHh
Confidence 99999999999999999999999 9999998765433211 0 000 112233343344 3343 3699999999999
Q ss_pred cCCceeEE
Q 018565 333 AGFSRYNI 340 (354)
Q Consensus 333 aGf~~~~~ 340 (354)
+||..++.
T Consensus 228 agf~~~~~ 235 (264)
T KOG2361|consen 228 AGFEEVQL 235 (264)
T ss_pred cccchhcc
Confidence 99988764
No 69
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.31 E-value=2.4e-11 Score=111.87 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=85.8
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCC-cceE
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVP-EADA 250 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~-~~D~ 250 (354)
.++..++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++. .-..++..+|.+++.+ .||+
T Consensus 187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3444454 23346899999999999999999999999999999 788887764 2345677888877544 5999
Q ss_pred EEeccccccC---ChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 251 AIIKWVLHDW---GDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 251 i~~~~~lh~~---~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
|+++..+|.. ......++++++.+.|+| ||.++|+..
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp-gG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS-GGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCc-CCEEEEEEe
Confidence 9999988863 334568999999999999 999998654
No 70
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.30 E-value=2.6e-11 Score=102.08 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=76.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC-cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP-EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~ 259 (354)
++.+|||+|||+|..+..++++.|+.+++++|. +++++.+++ .++++++.+|+.+ +.. +||+|++... .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~- 122 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A- 122 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c-
Confidence 478999999999999999999999999999999 888877764 3459999999887 333 5999998752 1
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
....+++.+++.|+| ||.+++..
T Consensus 123 ----~~~~~l~~~~~~Lkp-GG~lv~~~ 145 (187)
T PRK00107 123 ----SLSDLVELCLPLLKP-GGRFLALK 145 (187)
T ss_pred ----CHHHHHHHHHHhcCC-CeEEEEEe
Confidence 245789999999999 99999864
No 71
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.30 E-value=1.2e-11 Score=103.13 Aligned_cols=98 Identities=22% Similarity=0.377 Sum_probs=80.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC--cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP--EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~--~~D~i~~~~~lh~ 259 (354)
...+|||+|||+|..+..+++++|+.+++++|+ +.+++.+++ ...+++...|.++..+ .||+|+++-.+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 568999999999999999999999999999999 888887764 2339999999999654 5999999988876
Q ss_pred CCh---HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 260 WGD---DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 260 ~~~---~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
-.+ +...++++.+.+.|+| ||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~-~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP-GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC-CCEEEEEe
Confidence 543 3568999999999999 99997743
No 72
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.30 E-value=4.3e-11 Score=102.06 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=93.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC---CCC--cceEEEeccccccCCh
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD---GVP--EADAAIIKWVLHDWGD 262 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~--~~D~i~~~~~lh~~~~ 262 (354)
+..+|||||||+|.++..+++. ...+++++|+ ++++..++. .+++++.+|+.+ +++ +||+|+++.++|++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 5679999999999999888765 4567899999 788877764 468888888865 233 4999999999999876
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc-chh--h-----hhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 263 DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN-KFK--S-----VRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~-~~~--~-----~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
. .++|+++.+.+++ +++.- +.... .. ... . ....+....... ...+.++.+++.++++++|
T Consensus 91 ~--~~~l~e~~r~~~~----~ii~~---p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 91 P--EEILDEMLRVGRH----AIVSF---PNFGY-WRVRWSILTKGRMPVTGELPYDWYNT-PNIHFCTIADFEDLCGELN 159 (194)
T ss_pred H--HHHHHHHHHhCCe----EEEEc---CChhH-HHHHHHHHhCCccccCCCCCccccCC-CCcccCcHHHHHHHHHHCC
Confidence 4 4778888776554 33321 11100 00 000 0 000000000000 2235678999999999999
Q ss_pred CceeEEEEcC
Q 018565 335 FSRYNITSIH 344 (354)
Q Consensus 335 f~~~~~~~~~ 344 (354)
|++++....+
T Consensus 160 f~v~~~~~~~ 169 (194)
T TIGR02081 160 LRILDRAAFD 169 (194)
T ss_pred CEEEEEEEec
Confidence 9999877664
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.29 E-value=3.8e-11 Score=94.45 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=76.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C--CCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G--VPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~--~~~~D~i~~~~ 255 (354)
..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|... + .+.||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 44567999999999999999999999999999999 777777653 3578888888664 1 23599999876
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
..+ ...++++++++.|+| ||.+++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~-gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRP-GGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcCC-CCEEEEE
Confidence 543 345899999999999 9998874
No 74
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.26 E-value=4.3e-11 Score=104.50 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=99.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CC-CeEEeecCCCC-C--C-CcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CH-GVEHVGGDMFD-G--V-PEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-~v~~~~~d~~~-~--~-~~~D~i~~~~~l 257 (354)
...+|||+|||+|.++..+++.. .+++++|+ +.++..++. .. ++++...|+.+ + . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888764 46999999 777776654 22 58888888765 2 2 359999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh-c---c-c-CCcccCCHHHHHHHHH
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM-A---H-T-NKGKERSLKEWDYVLR 331 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~-~---~-~-~~g~~~t~~e~~~ll~ 331 (354)
|+..+. ..+|++++++|+| ||.+++.....+... . .......... . . + ......+.++|.++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~-gG~l~i~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 192 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKP-GGILFFSTINRTPKS-----Y--LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLE 192 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCC-CcEEEEEecCCCchH-----H--HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHH
Confidence 997765 4789999999999 999888654221100 0 0000000000 0 0 0 1123457899999999
Q ss_pred HcCCceeEEEE
Q 018565 332 QAGFSRYNITS 342 (354)
Q Consensus 332 ~aGf~~~~~~~ 342 (354)
++||+++++..
T Consensus 193 ~~G~~i~~~~~ 203 (224)
T TIGR01983 193 SAGLRVKDVKG 203 (224)
T ss_pred HcCCeeeeeee
Confidence 99999988764
No 75
>PTZ00146 fibrillarin; Provisional
Probab=99.25 E-value=3.1e-10 Score=100.77 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=96.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH----HhhhcccCCCeEEeecCCCCC------CCcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PH----VVCVAEKCHGVEHVGGDMFDG------VPEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~~------~~~~D~i~~~ 254 (354)
+.+..+|||+|||+|.++..+++.. +.-+++++|+ +. ++..++...+|.++.+|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999875 4558999998 54 455555457899999998653 2358999887
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
.. . + ++...++.++++.||| ||.++|.......+.. .+ ....+. +|. ++|+++|
T Consensus 210 va-~--p-dq~~il~~na~r~LKp-GG~~vI~ika~~id~g-~~------------------pe~~f~-~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA-Q--P-DQARIVALNAQYFLKN-GGHFIISIKANCIDST-AK------------------PEVVFA-SEV-QKLKKEG 263 (293)
T ss_pred CC-C--c-chHHHHHHHHHHhccC-CCEEEEEEeccccccC-CC------------------HHHHHH-HHH-HHHHHcC
Confidence 64 1 2 3455667789999999 9999994221111111 00 000112 444 8899999
Q ss_pred CceeEEEEcCC---ceeEEEE
Q 018565 335 FSRYNITSIHA---VQSLIEA 352 (354)
Q Consensus 335 f~~~~~~~~~~---~~~~i~~ 352 (354)
|+.++.+.++. .++++.+
T Consensus 264 F~~~e~v~L~Py~~~h~~v~~ 284 (293)
T PTZ00146 264 LKPKEQLTLEPFERDHAVVIG 284 (293)
T ss_pred CceEEEEecCCccCCcEEEEE
Confidence 99999888743 3555553
No 76
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.1e-10 Score=103.05 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=88.6
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC-c
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP-E 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~-~ 247 (354)
.+.+++.++ .....+|||+|||.|.+++.+++.+|+.+++.+|. ...++.++. .++..+...|.+++.. .
T Consensus 147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 356677777 55556999999999999999999999999999999 667777665 2333677788888655 5
Q ss_pred ceEEEecccccc---CChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 248 ADAAIIKWVLHD---WGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 248 ~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
||+|+++-.+|. .......++++.+.+.|++ ||.|.|+-.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~-gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP-GGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc-CCEEEEEEc
Confidence 999999999986 2233455899999999999 999999765
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.20 E-value=4.7e-10 Score=99.64 Aligned_cols=123 Identities=19% Similarity=0.258 Sum_probs=93.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC--cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP--EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~--~~D~i~~~~~lh~ 259 (354)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++. ..++++..+|++++.+ .||+|+++-..+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346899999999999999999999999999999 888887764 3469999999988543 5999998543332
Q ss_pred ------CChH------------------HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhccc
Q 018565 260 ------WGDD------------------ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHT 315 (354)
Q Consensus 260 ------~~~~------------------~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (354)
+..+ ....+++++.+.|+| ||.+++.. ..
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~-gG~~~~~~------~~-------------------- 219 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP-GGWLLLEI------GY-------------------- 219 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc-CCEEEEEE------Cc--------------------
Confidence 2111 124789999999999 99887621 00
Q ss_pred CCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 316 NKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 316 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
...+++.++++++||+.++++.-
T Consensus 220 -----~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 220 -----DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred -----cHHHHHHHHHHhCCCCceEEEeC
Confidence 12467888899999998887664
No 78
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.20 E-value=6.3e-11 Score=101.57 Aligned_cols=98 Identities=18% Similarity=0.108 Sum_probs=77.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCC-CC-C--CC--cceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDM-FD-G--VP--EADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~-~~-~--~~--~~D~i~~~~ 255 (354)
+..+|||+|||+|..+..+++.+|+.+++++|+ +++++.+++ ..+++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999999999999 888887764 36799999998 43 3 33 499998865
Q ss_pred ccccCC------hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLHDWG------DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh~~~------~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
...... ......+|++++++||| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp-gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP-GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC-CCEEEEEc
Confidence 432111 11135789999999999 99999854
No 79
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.20 E-value=7e-10 Score=99.97 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=99.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC--cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP--EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~--~~D~i~~~~~l 257 (354)
..+..+|||+|||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|++++.+ .||+|+++-..
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999999 777777664 3579999999988644 59999985322
Q ss_pred cc------CCh------------------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhc
Q 018565 258 HD------WGD------------------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMA 313 (354)
Q Consensus 258 h~------~~~------------------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (354)
.. .++ +...++++++.+.|+| ||.+++ +. ..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~-gG~l~~-e~-----g~------------------ 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP-GGWLLL-EI-----GY------------------ 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc-CCEEEE-EE-----Cc------------------
Confidence 11 111 1236788999999999 998887 21 11
Q ss_pred ccCCcccCCHHHHHHHHHHcCCceeEEEE-cCCceeEEEEe
Q 018565 314 HTNKGKERSLKEWDYVLRQAGFSRYNITS-IHAVQSLIEAF 353 (354)
Q Consensus 314 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~ 353 (354)
...+++.+++++.||+.+++.. +.+...++.++
T Consensus 241 -------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0145688899999998776643 34555555554
No 80
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.18 E-value=9.4e-10 Score=94.77 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=86.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------------CCCeEEeecCCCC-CC--
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------CHGVEHVGGDMFD-GV-- 245 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~-- 245 (354)
.+..+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ ..+|++.++|+++ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 35689999999999999999997 778999999 766666411 4689999999999 42
Q ss_pred ---CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 246 ---PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 246 ---~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
+.||+|+-..+++.++++...+..+++.++|+| ||.++++....+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p-gg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN-NTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC-CcEEEEEEEecC
Confidence 259999999999999999999999999999999 999999876443
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.18 E-value=7.2e-10 Score=98.30 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=88.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCcceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPEADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~D~i~~~~~lh~ 259 (354)
.++.+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++ ..++.+..+|. .||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 3578999999999999887766543 36999999 888887765 12333333321 6999987532
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
.+....+++++.+.||| ||.+++.+... ...+++.+.+++.||++.+
T Consensus 189 --~~~~~~l~~~~~~~Lkp-gG~lilsgi~~------------------------------~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 189 --ANPLLELAPDLARLLKP-GGRLILSGILE------------------------------EQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred --HHHHHHHHHHHHHhcCC-CcEEEEEECcH------------------------------hhHHHHHHHHHHCCCEEEE
Confidence 23456789999999999 99999864321 0256778889999999998
Q ss_pred EEEcCCceeEEE
Q 018565 340 ITSIHAVQSLIE 351 (354)
Q Consensus 340 ~~~~~~~~~~i~ 351 (354)
+.......+++.
T Consensus 236 ~~~~~~W~~~~~ 247 (250)
T PRK00517 236 VLERGEWVALVG 247 (250)
T ss_pred EEEeCCEEEEEE
Confidence 887666655544
No 82
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.17 E-value=3.9e-10 Score=97.29 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=100.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------------CCCeEEeecCCCC-CC-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------CHGVEHVGGDMFD-GV- 245 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~- 245 (354)
..+..+||..|||.|.-+..|+++ +.+++++|+ +..++.+.+ ..+|++..+|||+ +.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456789999999999999999997 679999999 777776511 4578999999999 32
Q ss_pred --CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCH
Q 018565 246 --PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSL 323 (354)
Q Consensus 246 --~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~ 323 (354)
+.||+|+=+.+++.++++...+..+.+.++|+| ||+++++....+.... . +.....+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p-~g~~lLi~l~~~~~~~-~------------------GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP-GGRGLLITLEYPQGEM-E------------------GPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE-EEEEEEEEEES-CSCS-S------------------SSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC-CCcEEEEEEEcCCcCC-C------------------CcCCCCCH
Confidence 249999999999999999999999999999999 9996666555443221 0 11122368
Q ss_pred HHHHHHHHHcCCceeEEEE
Q 018565 324 KEWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~~~~ 342 (354)
+|+.+++. .+|++.....
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 99999999 7888877654
No 83
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.16 E-value=1.8e-09 Score=94.34 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=112.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC------CCcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPR--IRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG------VPEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~------~~~~D~i 251 (354)
..+.+||||.||.|.+....+..+|. .++...|. +..++..++ .+-++|..+|.|+. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 78889998 666665543 45559999999983 2458999
Q ss_pred EeccccccCChHH-HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcc--cCCcccCCHHHHHH
Q 018565 252 IIKWVLHDWGDDE-CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAH--TNKGKERSLKEWDY 328 (354)
Q Consensus 252 ~~~~~lh~~~~~~-~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~g~~~t~~e~~~ 328 (354)
+.+-+...|+|.+ +...|+.+++++.| ||.|+...--.++... .. ..-++.+-. ..--+.||..|+.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p-gG~lIyTgQPwHPQle-------~I-Ar~LtsHr~g~~WvMRrRsq~EmD~ 284 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP-GGYLIYTGQPWHPQLE-------MI-ARVLTSHRDGKAWVMRRRSQAEMDQ 284 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC-CcEEEEcCCCCCcchH-------HH-HHHHhcccCCCceEEEecCHHHHHH
Confidence 9999999999976 55579999999999 9988875432222211 11 111111100 00016789999999
Q ss_pred HHHHcCCceeEEEEc-CCceeEEEEeC
Q 018565 329 VLRQAGFSRYNITSI-HAVQSLIEAFP 354 (354)
Q Consensus 329 ll~~aGf~~~~~~~~-~~~~~~i~~~~ 354 (354)
|.+++||+..+.+-- -+.+.|..|+|
T Consensus 285 Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 285 LVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHcCCchhhheeccCCceEEEeecC
Confidence 999999987654332 34466665553
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=3.2e-10 Score=97.50 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=75.5
Q ss_pred HHhcCCCccCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCC---C
Q 018565 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGV---P 246 (354)
Q Consensus 179 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~---~ 246 (354)
+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +++++.+++ ..++++..+|..+.. .
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 344444 55678999999999999999988764 568999999 888877664 246899999998733 2
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+||+|++...+++++ +++.+.|+| ||+|++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~-gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKD-GGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCc-CcEEEEE
Confidence 599999998887655 356788999 9999874
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.13 E-value=2.9e-09 Score=90.17 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=91.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCC-eEEeecCCCCCCC--cceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHG-VEHVGGDMFDGVP--EADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~-v~~~~~d~~~~~~--~~D~i~~~~~ 256 (354)
.+..+|||+|||+|.++..+++. +.+++++|. +++++.+++ .++ +.+..+|+.++++ .||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999987 678999999 888877753 122 8899999888544 4999998654
Q ss_pred cccCC-------------------hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCC
Q 018565 257 LHDWG-------------------DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNK 317 (354)
Q Consensus 257 lh~~~-------------------~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (354)
++..+ ......+++++.++||| ||.+++.... .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~-gG~~~~~~~~-----~---------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP-GGRILLLQSS-----L---------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC-CeEEEEEEcc-----c----------------------
Confidence 43211 12346789999999999 9988875310 0
Q ss_pred cccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 318 GKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 318 g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
...+++.++++++||++..+...
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeec
Confidence 02356788999999998876554
No 86
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.12 E-value=1.2e-09 Score=94.51 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=103.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C----CCcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G----VPEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~----~~~~D~i~~ 253 (354)
.....+|||+|||+|..+..++++++..+++++++ +.+.+.|++ .+||+++.+|+.. . ...||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34489999999999999999999999999999999 888887775 6899999999987 2 224899999
Q ss_pred ccccccCChH----------------HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCC
Q 018565 254 KWVLHDWGDD----------------ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNK 317 (354)
Q Consensus 254 ~~~lh~~~~~----------------~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (354)
+-..+.-+.. ....+++.+.+.||| ||++.++-..
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~-~G~l~~V~r~---------------------------- 172 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP-GGRLAFVHRP---------------------------- 172 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC-CCEEEEEecH----------------------------
Confidence 7666543322 256889999999999 9999885320
Q ss_pred cccCCHHHHHHHHHHcCCceeEEEEc---CC---ceeEEEEeC
Q 018565 318 GKERSLKEWDYVLRQAGFSRYNITSI---HA---VQSLIEAFP 354 (354)
Q Consensus 318 g~~~t~~e~~~ll~~aGf~~~~~~~~---~~---~~~~i~~~~ 354 (354)
-...|+.+++.+.+|...++..+ .+ ..-+|+++|
T Consensus 173 ---erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 173 ---ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred ---HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence 02567788888888887776655 22 244666553
No 87
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.12 E-value=8.4e-10 Score=91.25 Aligned_cols=148 Identities=16% Similarity=0.256 Sum_probs=99.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC---CC--cceEEEeccccccC
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG---VP--EADAAIIKWVLHDW 260 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~---~~--~~D~i~~~~~lh~~ 260 (354)
.+++.+|||+|||.|.++..|.+. .++++.++++ ++.+..+. ...+.++.+|+.+. +| +||.|+++.+|.+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 357899999999999999888885 5899999999 55444444 35688999999873 55 39999999999987
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc-chh-----hhhhhccHH-hhcccCCcccCCHHHHHHHHHHc
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN-KFK-----SVRLMLDMV-MMAHTNKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~-~~~-----~~~~~~~l~-~~~~~~~g~~~t~~e~~~ll~~a 333 (354)
..++ ++|+++.|+ |.+.+|.= |.... .. ... .....-.+. .+-.|+|=+..|..++++++++.
T Consensus 89 ~~P~--~vL~EmlRV----gr~~IVsF---PNFg~-W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 89 RRPD--EVLEEMLRV----GRRAIVSF---PNFGH-WRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred hHHH--HHHHHHHHh----cCeEEEEe---cChHH-HHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence 6554 677777554 44555422 21111 00 000 000000010 11123556677999999999999
Q ss_pred CCceeEEEEcCCc
Q 018565 334 GFSRYNITSIHAV 346 (354)
Q Consensus 334 Gf~~~~~~~~~~~ 346 (354)
|+++.+...+.+.
T Consensus 159 ~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 159 GIRIEERVFLDGG 171 (193)
T ss_pred CCEEEEEEEEcCC
Confidence 9999998887543
No 88
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.11 E-value=5e-10 Score=92.31 Aligned_cols=130 Identities=19% Similarity=0.223 Sum_probs=88.5
Q ss_pred EEeec-hHHhhhccc---------CCCeEEeecCCCC-CCC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceE
Q 018565 217 INFDL-PHVVCVAEK---------CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKV 283 (354)
Q Consensus 217 ~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~l 283 (354)
+++|. ++|++.|++ ..+++++.+|+.+ |++ .||+|++..++|++++. .++|++++++||| ||++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp-GG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP-GSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc-CeEE
Confidence 47888 889888743 2469999999988 665 39999999999998754 5899999999999 9999
Q ss_pred EEEeeeeCCCCCCCcchhhhhhhccHHhh---cccCC-----------cccCCHHHHHHHHHHcCCceeEEEEcCCc-ee
Q 018565 284 IIVEAIIEEDDGVDNKFKSVRLMLDMVMM---AHTNK-----------GKERSLKEWDYVLRQAGFSRYNITSIHAV-QS 348 (354)
Q Consensus 284 li~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~-----------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~ 348 (354)
++.|...++... .... .......... ..... ....+.+++.++|+++||+.++....... ..
T Consensus 78 ~i~d~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~ 154 (160)
T PLN02232 78 SILDFNKSNQSV-TTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMG 154 (160)
T ss_pred EEEECCCCChHH-HHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhH
Confidence 999987554321 1000 0000000000 00000 13458999999999999999988777543 33
Q ss_pred EEEE
Q 018565 349 LIEA 352 (354)
Q Consensus 349 ~i~~ 352 (354)
+..+
T Consensus 155 ~~~~ 158 (160)
T PLN02232 155 NLVA 158 (160)
T ss_pred eeEe
Confidence 4443
No 89
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.11 E-value=4.4e-10 Score=95.76 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=76.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C---CC--cceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G---VP--EADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~---~~--~~D~i~~~~ 255 (354)
...++||||||+|.++..+++++|+..++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .+|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 888877653 3589999999875 2 33 488888765
Q ss_pred ccccCChHH-------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLHDWGDDE-------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..+ |+... ...+++.++++||| ||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp-gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK-GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC-CCEEEEEe
Confidence 432 33221 14689999999999 99998865
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.10 E-value=3.5e-09 Score=98.56 Aligned_cols=133 Identities=19% Similarity=0.187 Sum_probs=96.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC-CC---cceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG-VP---EADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~-~~---~~D~i~~~~~lh 258 (354)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|++++ .+ .||+|+++-.-.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999999 889888765 45799999999773 22 499999854321
Q ss_pred cCCh-----------------------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhccc
Q 018565 259 DWGD-----------------------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHT 315 (354)
Q Consensus 259 ~~~~-----------------------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (354)
.-.+ +...++++.+.+.|+| ||.+++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp-gG~lil-EiG~------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE-GGFLLL-EHGF------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC-CcEEEE-EECc-------------------------
Confidence 1000 1234677778889999 887653 3211
Q ss_pred CCcccCCHHHHHHHHHHcCCceeEEEEc-CCceeEEEEe
Q 018565 316 NKGKERSLKEWDYVLRQAGFSRYNITSI-HAVQSLIEAF 353 (354)
Q Consensus 316 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~ 353 (354)
...+++.+++++.||+.+++..- .+...++.++
T Consensus 384 -----~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 384 -----DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -----cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 01557788899999988777654 4455555554
No 91
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=9.2e-10 Score=95.08 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=76.9
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV--- 245 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~--- 245 (354)
..++..++ ..++.+|||||||+|..+..+++.. ++.+++++|. +++++.+++ ..+++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 34445555 6678999999999999999888875 4578999999 888887765 357999999988732
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 246 PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 246 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.+||+|++....+..+ +.+.+.||| ||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp-gG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLKD-GGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhCC-CcEEEEE
Confidence 3599999987765433 345668999 9998884
No 92
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.08 E-value=6.4e-10 Score=99.95 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=72.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCC---CeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC--cceEEEeccccccC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPR---IRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDW 260 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~ 260 (354)
...+|||+|||+|.++..+++..|. .+++++|+ +.++..+++ .+++.+..+|..+ |++ .||+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4578999999999999999988764 36899999 888888765 5778999999887 655 4999987543
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+ ..+++++++||| ||.++++.+
T Consensus 161 ~-----~~~~e~~rvLkp-gG~li~~~p 182 (272)
T PRK11088 161 P-----CKAEELARVVKP-GGIVITVTP 182 (272)
T ss_pred C-----CCHHHHHhhccC-CCEEEEEeC
Confidence 1 236788999999 999998753
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=99.07 E-value=2.5e-09 Score=94.02 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=92.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CC-CcceEEEeccccccCChHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GV-PEADAAIIKWVLHDWGDDE 264 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~-~~~D~i~~~~~lh~~~~~~ 264 (354)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++ .++++++.+|+.+ .. ..||+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 357999999999999999988887789999999 889888876 4679999999998 32 3599999988887654331
Q ss_pred ------------------HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 265 ------------------CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 265 ------------------~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
..++++.....|+| +|.++++ ...... + ....+.+++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p-~G~~~~~---yss~~~-----------y----------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP-TGSAGFA---YSGRPY-----------Y----------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecC-CceEEEE---Eecccc-----------c----------cccCCHHHH
Confidence 23566777888888 8866665 111110 0 123368899
Q ss_pred HHHHHHcCCce
Q 018565 327 DYVLRQAGFSR 337 (354)
Q Consensus 327 ~~ll~~aGf~~ 337 (354)
.++++++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999864
No 94
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.06 E-value=2.8e-09 Score=91.77 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=74.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeecCCCCC---------CC--cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG---------VP--EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~--~~D~i~~~ 254 (354)
+.++.+|||+|||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.++ .+ .+|+|++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 3567899999999999999999886 45789999995432 235699999999883 22 49999997
Q ss_pred cccccCChHH---------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 255 WVLHDWGDDE---------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 255 ~~lh~~~~~~---------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
...|..+... ...+|+.+++.|+| ||.+++..
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp-GG~~vi~~ 165 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP-GGSFVVKV 165 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEE
Confidence 7665543221 24689999999999 99998854
No 95
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.06 E-value=1.7e-09 Score=88.83 Aligned_cols=94 Identities=23% Similarity=0.245 Sum_probs=79.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC---CCCcceEEEeccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD---GVPEADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~~~D~i~~~~~ 256 (354)
..++.+++|||||+|..+.+++..+|+.+++.+|. ++.++..++ .++++++.+|.-+ +.+.+|.|++.--
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence 67889999999999999999999999999999998 777766553 6899999998876 3446999999775
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
- ....+|..+...||| ||+|++.-
T Consensus 112 ~------~i~~ile~~~~~l~~-ggrlV~na 135 (187)
T COG2242 112 G------NIEEILEAAWERLKP-GGRLVANA 135 (187)
T ss_pred C------CHHHHHHHHHHHcCc-CCeEEEEe
Confidence 2 345899999999999 99998743
No 96
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.06 E-value=1.7e-09 Score=93.82 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=75.9
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---C
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---P 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~ 246 (354)
.+++.+. ..+..+|||||||+|..+..+++..+ +.+++++|+ +++++.+++ .++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 4444455 56788999999999999999998764 467999998 888887764 357999999998732 3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+||+|++.....+. .+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~-gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE-GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc-CcEEEEE
Confidence 59999987665443 3456788999 9998874
No 97
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.05 E-value=1.4e-09 Score=98.05 Aligned_cols=96 Identities=21% Similarity=0.357 Sum_probs=75.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--cceEEEeccc--
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--EADAAIIKWV-- 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~~D~i~~~~~-- 256 (354)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++-.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999999999999999999 888887764 3579999999987544 4999998521
Q ss_pred -----------cccCCh----------HHHHHHHHHHHHhcCCCCceEEE
Q 018565 257 -----------LHDWGD----------DECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 257 -----------lh~~~~----------~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+++-|. +....+++.+.+.|+| ||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~-gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE-NGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEE
Confidence 111111 1236789999999999 998764
No 98
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.05 E-value=3e-09 Score=90.96 Aligned_cols=93 Identities=15% Similarity=0.217 Sum_probs=74.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C-CcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V-PEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~-~~~D~i~~ 253 (354)
..+..+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ .++++++.+|+.+ + . +.||+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5677899999999999999998764 6679999999 888887653 3678999998876 2 2 35999988
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
... ......+++.+.+.|+| ||++++
T Consensus 118 ~~~-----~~~~~~~l~~~~~~Lkp-gG~lv~ 143 (198)
T PRK00377 118 GGG-----SEKLKEIISASWEIIKK-GGRIVI 143 (198)
T ss_pred CCC-----cccHHHHHHHHHHHcCC-CcEEEE
Confidence 532 23456889999999999 999876
No 99
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=1.8e-09 Score=98.26 Aligned_cols=94 Identities=21% Similarity=0.331 Sum_probs=75.4
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--cceEEEeccc----
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--EADAAIIKWV---- 256 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~~D~i~~~~~---- 256 (354)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++-.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888887764 3579999999987543 4999998521
Q ss_pred ---------cccCCh----------HHHHHHHHHHHHhcCCCCceEEE
Q 018565 257 ---------LHDWGD----------DECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 257 ---------lh~~~~----------~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+++.|. +....+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p-gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE-DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC-CCEEEE
Confidence 121111 2346889999999999 998876
No 100
>PRK14967 putative methyltransferase; Provisional
Probab=99.02 E-value=5.3e-09 Score=91.17 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=74.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCC--cceEEEeccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVP--EADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~--~~D~i~~~~~lh 258 (354)
..+..+|||+|||+|.++..+++. +..+++++|+ +.++..+++ ..+++++.+|+.+..+ .||+|+++-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 445689999999999999998875 3348999999 777776654 3468888999887433 599999864322
Q ss_pred cCCh-------------------HHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 259 DWGD-------------------DECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 259 ~~~~-------------------~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
.-+. .....+++++.+.||| ||+++++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~-gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP-GGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC-CcEEEEEEec
Confidence 1111 1245688999999999 9999986543
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.02 E-value=3.1e-09 Score=96.02 Aligned_cols=94 Identities=21% Similarity=0.345 Sum_probs=75.2
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--cceEEEec------
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--EADAAIIK------ 254 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~~D~i~~~------ 254 (354)
.+|||+|||+|.++..++..+|+.+++++|+ +++++.+++ ..+++++.+|++++.+ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888887765 2469999999998654 59999985
Q ss_pred -------cccccCCh----------HHHHHHHHHHHHhcCCCCceEEE
Q 018565 255 -------WVLHDWGD----------DECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 255 -------~~lh~~~~----------~~~~~~L~~~~~~L~p~gG~lli 285 (354)
.++++-|. +...++++++.+.|+| ||.+++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~-gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP-NGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC-CCEEEE
Confidence 22222221 1456889999999999 987654
No 102
>PRK04457 spermidine synthase; Provisional
Probab=99.02 E-value=1.3e-09 Score=97.14 Aligned_cols=98 Identities=16% Similarity=0.287 Sum_probs=77.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC---CCC-cceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD---GVP-EADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~---~~~-~~D~i~~~~ 255 (354)
+++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .++++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 999988775 3789999999865 233 599998753
Q ss_pred cc-ccCChH-HHHHHHHHHHHhcCCCCceEEEE
Q 018565 256 VL-HDWGDD-ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 256 ~l-h~~~~~-~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.- ...+.. ...++++++++.|+| ||.+++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~p-gGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSS-DGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCC-CcEEEEE
Confidence 11 111211 126899999999999 9998884
No 103
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.02 E-value=9.8e-10 Score=85.56 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=75.9
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C--C--CcceEEEecccc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G--V--PEADAAIIKWVL 257 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~--~--~~~D~i~~~~~l 257 (354)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .+++++..+|+.+ . . ++||+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 888777764 4789999999987 3 3 349999998776
Q ss_pred ccCC------hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWG------DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~------~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+... .+....+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~-gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP-GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC-CeEEEEEe
Confidence 6432 11346889999999999 99988764
No 104
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.01 E-value=3.1e-09 Score=98.30 Aligned_cols=99 Identities=14% Similarity=0.201 Sum_probs=77.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC---CCC--cceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD---GVP--EADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~--~~D~i~~~~ 255 (354)
.....+||||||+|.++..+++++|+..++++|+ +.++..+.. ..++.++.+|... .++ .+|.|++..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3456999999999999999999999999999999 777766543 4689999999743 344 489998754
Q ss_pred ccccCChHH-----HHHHHHHHHHhcCCCCceEEEEee
Q 018565 256 VLHDWGDDE-----CIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 256 ~lh~~~~~~-----~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.. .|+... ...+|+.++++|+| ||.+.+...
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkp-GG~l~l~TD 236 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKP-GGTLELRTD 236 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCC-CcEEEEEEE
Confidence 32 243221 15789999999999 999998653
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.01 E-value=4.6e-09 Score=89.72 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=77.4
Q ss_pred HHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC---CC-Cc
Q 018565 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD---GV-PE 247 (354)
Q Consensus 179 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~-~~ 247 (354)
++..++ ..+..+|||+|||+|.++..+++..|+.+++++|+ +++++.+++ ..+++++.+|..+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 344444 55678999999999999999998888899999999 888887764 3579999998865 22 23
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+|.+++.. ......+++++.+.|+| ||++++...
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~Lkp-gG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLKP-GGRLVATAS 143 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcCC-CeEEEEEee
Confidence 67665421 12346889999999999 999988653
No 106
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.99 E-value=3.6e-09 Score=79.55 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=76.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc------cCCCeEEeecCCCCCC----CcceEEEeccccccC
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE------KCHGVEHVGGDMFDGV----PEADAAIIKWVLHDW 260 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~~~----~~~D~i~~~~~lh~~ 260 (354)
+++|+|||.|..+..+++ .+..+++++|. ++....++ ...++++..+|+.+.. +++|++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67889999998 66666554 1567999999998832 349999999999875
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.+....+++.+.+.|+| ||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~-~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP-GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC-CCEEEEE
Confidence 45677999999999999 9988875
No 107
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.96 E-value=1.6e-08 Score=98.19 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=93.5
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--cceEEEecccc--
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--EADAAIIKWVL-- 257 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~~D~i~~~~~l-- 257 (354)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++-..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 888887764 3579999999987543 59999984211
Q ss_pred ------------ccCCh----------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhccc
Q 018565 258 ------------HDWGD----------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHT 315 (354)
Q Consensus 258 ------------h~~~~----------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (354)
.+.|. +...++++++.+.|+| ||.+++ |.- . .
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~-gG~l~l-Eig-----~-~------------------ 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP-NGKIIL-EIG-----F-K------------------ 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC-CCEEEE-EEC-----C-c------------------
Confidence 11110 1245678889999999 998765 321 1 0
Q ss_pred CCcccCCHHHHHHHHHHcCCceeEEEEc-CCceeEEE
Q 018565 316 NKGKERSLKEWDYVLRQAGFSRYNITSI-HAVQSLIE 351 (354)
Q Consensus 316 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~ 351 (354)
..+.+.+++++.||..+++..- .+...++.
T Consensus 273 ------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~ 303 (506)
T PRK01544 273 ------QEEAVTQIFLDHGYNIESVYKDLQGHSRVIL 303 (506)
T ss_pred ------hHHHHHHHHHhcCCCceEEEecCCCCceEEE
Confidence 1456677888889987776553 34443443
No 108
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=4.8e-09 Score=88.75 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=97.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------------------------
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------------- 230 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------- 230 (354)
+..++.+...+-.+..+|||||.+|.++..+++.+....+.++|+ +..+..|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 334444443355778999999999999999999998888999999 777777653
Q ss_pred -----------------------CCCeEEeecCCCC-CCCcceEEEeccc----cccCChHHHHHHHHHHHHhcCCCCce
Q 018565 231 -----------------------CHGVEHVGGDMFD-GVPEADAAIIKWV----LHDWGDDECIKILKNCKEAITKDKGK 282 (354)
Q Consensus 231 -----------------------~~~v~~~~~d~~~-~~~~~D~i~~~~~----lh~~~~~~~~~~L~~~~~~L~p~gG~ 282 (354)
..+..+...||.. ..+.||+|+|-.+ =-+|.|+-...+++++++.|.| ||.
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p-gGi 204 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP-GGI 204 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc-CcE
Confidence 0122222333443 3456999988543 3468899999999999999999 886
Q ss_pred EEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHc--CCceeE
Q 018565 283 VIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQA--GFSRYN 339 (354)
Q Consensus 283 lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~a--Gf~~~~ 339 (354)
|++ |+ ..+ .+ +..... -......+.......++.+..++.+. ||+.++
T Consensus 205 Lvv-EP----QpW-ks-Y~kaar--~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 205 LVV-EP----QPW-KS-YKKAAR--RSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred EEE-cC----Cch-HH-HHHHHH--HHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 665 32 111 11 110111 11111111222345688889999887 555443
No 109
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.95 E-value=6.6e-09 Score=84.11 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=92.1
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-C-C-cceEEEecccccc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-V-P-EADAAIIKWVLHD 259 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-~-~-~~D~i~~~~~lh~ 259 (354)
.+|||+|||.|+++..|++.--.-..+++|. +..++.|+. .+.|+|+..|+.+| + + .||+|+-..++-.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 4999999999999999998743334788998 777766653 45599999999995 2 2 4888877655533
Q ss_pred C------ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHc
Q 018565 260 W------GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 260 ~------~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~a 333 (354)
. +.......+..+.+.|+| ||.++|.. .-+|.+|+.+-++.-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~-~gifvItS-------------------------------CN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSP-GGIFVITS-------------------------------CNFTKDELVEEFENF 196 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCC-CcEEEEEe-------------------------------cCccHHHHHHHHhcC
Confidence 2 222334567888889999 88888732 123688889999999
Q ss_pred CCceeEEEEcCCc
Q 018565 334 GFSRYNITSIHAV 346 (354)
Q Consensus 334 Gf~~~~~~~~~~~ 346 (354)
||.....+|.|.+
T Consensus 197 ~f~~~~tvp~ptF 209 (227)
T KOG1271|consen 197 NFEYLSTVPTPTF 209 (227)
T ss_pred CeEEEEeeccceE
Confidence 9999988888743
No 110
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.94 E-value=2.1e-08 Score=90.07 Aligned_cols=124 Identities=16% Similarity=0.130 Sum_probs=86.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCcceEEEeccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPEADAAIIKWVLH 258 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~D~i~~~~~lh 258 (354)
.++.+|||||||||.+++..++... -+++++|+ |..++.+++ .+++.+. ...+ ....||+|+++-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~-- 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANIL-- 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES---
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCC--
Confidence 3567999999999999999888643 47999999 888777765 4566553 2122 2246999997543
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
.+....+...+.+.|+| ||.++++..... ..+++.+.+++ ||++.
T Consensus 235 ---~~vL~~l~~~~~~~l~~-~G~lIlSGIl~~------------------------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 235 ---ADVLLELAPDIASLLKP-GGYLILSGILEE------------------------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp ---HHHHHHHHHHCHHHEEE-EEEEEEEEEEGG------------------------------GHHHHHHHHHT-TEEEE
T ss_pred ---HHHHHHHHHHHHHhhCC-CCEEEEccccHH------------------------------HHHHHHHHHHC-CCEEE
Confidence 34567888899999999 998888654321 14566777877 99998
Q ss_pred EEEEcCCceeEEE
Q 018565 339 NITSIHAVQSLIE 351 (354)
Q Consensus 339 ~~~~~~~~~~~i~ 351 (354)
+........+++.
T Consensus 280 ~~~~~~~W~~l~~ 292 (295)
T PF06325_consen 280 EEREEGEWVALVF 292 (295)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEEECCEEEEEE
Confidence 8887665555443
No 111
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.3e-08 Score=88.98 Aligned_cols=126 Identities=17% Similarity=0.250 Sum_probs=90.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeE----EeecCCCC-CC-CcceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVE----HVGGDMFD-GV-PEADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~----~~~~d~~~-~~-~~~D~i~~~~~l 257 (354)
.++.++||+|||||.+++..++.. ..+++++|+ |..++.+++ .+.++ ....+..+ +. .+||+|+++= |
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 478999999999999999988864 346899999 877777765 23333 33334333 33 2699998854 3
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
-+-..++...+.+.+|| ||+++++..... ..+...+.+.++||.+
T Consensus 239 ----A~vl~~La~~~~~~lkp-gg~lIlSGIl~~------------------------------q~~~V~~a~~~~gf~v 283 (300)
T COG2264 239 ----AEVLVELAPDIKRLLKP-GGRLILSGILED------------------------------QAESVAEAYEQAGFEV 283 (300)
T ss_pred ----HHHHHHHHHHHHHHcCC-CceEEEEeehHh------------------------------HHHHHHHHHHhCCCeE
Confidence 23456889999999999 999887653210 1556678888999999
Q ss_pred eEEEEcCCceeEE
Q 018565 338 YNITSIHAVQSLI 350 (354)
Q Consensus 338 ~~~~~~~~~~~~i 350 (354)
+++..-....++.
T Consensus 284 ~~~~~~~eW~~i~ 296 (300)
T COG2264 284 VEVLEREEWVAIV 296 (300)
T ss_pred eEEEecCCEEEEE
Confidence 9988765555444
No 112
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.92 E-value=3e-08 Score=82.91 Aligned_cols=175 Identities=14% Similarity=0.182 Sum_probs=101.8
Q ss_pred hhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhc----hhhhHHHHHhcCCCccCCCceEEEecCCcc
Q 018565 126 PWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACD----TRLAMRAIIEGCPEVFDGIETLVDIGGNDG 201 (354)
Q Consensus 126 ~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~----~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G 201 (354)
.++.|.+.+-+.. + ...++.+.++|+....|+...+.. -..-.+.+++.+.. .++...|.|+|||.+
T Consensus 14 rFR~lNE~LYT~~-s-------~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA 84 (219)
T PF05148_consen 14 RFRWLNEQLYTTS-S-------EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDA 84 (219)
T ss_dssp HHHHHHHHHHHS--H-------HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-
T ss_pred chHHHHHhHhcCC-H-------HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchH
Confidence 4455666554432 1 123456677777777666654433 22234556655551 345679999999999
Q ss_pred HHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCC-CCCc--ceEEEeccccccCChHHHHHHHHHHHHhcCC
Q 018565 202 TTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD-GVPE--ADAAIIKWVLHDWGDDECIKILKNCKEAITK 278 (354)
Q Consensus 202 ~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 278 (354)
.++..+.. ..++.-+|+-.. .+ .+++.|+.. |.++ .|+++++-.|-. .....+++++.|+|||
T Consensus 85 ~la~~~~~---~~~V~SfDLva~------n~--~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~ 150 (219)
T PF05148_consen 85 KLAKAVPN---KHKVHSFDLVAP------NP--RVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKP 150 (219)
T ss_dssp HHHHH--S------EEEEESS-S------ST--TEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEE
T ss_pred HHHHhccc---CceEEEeeccCC------CC--CEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheecc
Confidence 99866532 357888997311 23 367788877 7653 899888776643 3456899999999999
Q ss_pred CCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcCCceeEEEE
Q 018565 279 DKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEA 352 (354)
Q Consensus 279 ~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~ 352 (354)
||.|.|.|... +.-..+++.+.++..||+............+.+.
T Consensus 151 -~G~L~IAEV~S----------------------------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F 195 (219)
T PF05148_consen 151 -GGILKIAEVKS----------------------------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEF 195 (219)
T ss_dssp -EEEEEEEEEGG----------------------------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEE
T ss_pred -CcEEEEEEecc----------------------------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEE
Confidence 99999988532 1114678888999999999876544444444443
No 113
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.91 E-value=2.7e-08 Score=89.00 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=77.1
Q ss_pred CCceEEEecCCccH--HHHHH--HHHCC----CCeEEEeec-hHHhhhccc-----------------------------
Q 018565 189 GIETLVDIGGNDGT--TLRTL--TKAFP----RIRGINFDL-PHVVCVAEK----------------------------- 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~--~~~~l--~~~~p----~~~~~~~D~-~~~~~~a~~----------------------------- 230 (354)
+..+|.-.||++|. +++++ .+..+ ++++++.|+ +.+++.|+.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34899999999994 34433 33322 467999999 788777653
Q ss_pred --------CCCeEEeecCCCC-CCC---cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 231 --------CHGVEHVGGDMFD-GVP---EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 231 --------~~~v~~~~~d~~~-~~~---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
..+|+|...|..+ +++ +||+|+|.|++.+++++...+++++++++|+| ||.|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p-gG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP-DGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 1568899999998 443 49999999999999999999999999999999 9988773
No 114
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.91 E-value=4.3e-09 Score=89.10 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=70.4
Q ss_pred CCceEEEecCCccH--HHHHHH-HH-----CC-CCeEEEeec-hHHhhhccc----------------------------
Q 018565 189 GIETLVDIGGNDGT--TLRTLT-KA-----FP-RIRGINFDL-PHVVCVAEK---------------------------- 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~--~~~~l~-~~-----~p-~~~~~~~D~-~~~~~~a~~---------------------------- 230 (354)
+..+|.-+||++|. ++++++ .. .+ ..++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999994 333332 22 12 467899999 888887752
Q ss_pred ------CCCeEEeecCCCC-CC--CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 231 ------CHGVEHVGGDMFD-GV--PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 231 ------~~~v~~~~~d~~~-~~--~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
..+|+|...|..+ +. .+||+|+|.|||-+|+++...+++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p-gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP-GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE-EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC-CCEEEEe
Confidence 3689999999999 32 249999999999999999999999999999999 9999884
No 115
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.90 E-value=1.5e-08 Score=87.73 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=73.3
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---Cc
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---PE 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~~ 247 (354)
.++..+. ..+..+|||||||+|..+..+++.. .+++++|. +++++.+++ ..++++..+|..+.. .+
T Consensus 69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 3344444 5677899999999999998777764 37899998 888777654 346999999987743 35
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
||+|++...++++ .+.+.+.|+| ||++++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~-gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKE-GGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCC-CcEEEEEE
Confidence 9999998766543 3456789999 99988754
No 116
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.90 E-value=3e-09 Score=89.26 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=99.5
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEE-e---ecCCCC--CCCcc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEH-V---GGDMFD--GVPEA 248 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~-~---~~d~~~--~~~~~ 248 (354)
..+++...+ ..+..++||+|||||.++..+...- -+.+++|+ .+|++.+.+..-.+- . ..+|.. ....|
T Consensus 114 l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 114 LAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcc
Confidence 344555555 4457999999999999998887653 35788999 899999876221111 1 113443 23459
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|+|....|+-++.. ...++..+...|+| ||.+.++-...+.... . . ...-... .-+..-...
T Consensus 190 DLi~AaDVl~YlG~--Le~~~~~aa~~L~~-gGlfaFSvE~l~~~~~-f------~-l~ps~Ry-------AH~~~YVr~ 251 (287)
T COG4976 190 DLIVAADVLPYLGA--LEGLFAGAAGLLAP-GGLFAFSVETLPDDGG-F------V-LGPSQRY-------AHSESYVRA 251 (287)
T ss_pred cchhhhhHHHhhcc--hhhHHHHHHHhcCC-CceEEEEecccCCCCC-e------e-cchhhhh-------ccchHHHHH
Confidence 99999999988764 45889999999999 9988886554444332 0 0 0000000 114666789
Q ss_pred HHHHcCCceeEEEEc
Q 018565 329 VLRQAGFSRYNITSI 343 (354)
Q Consensus 329 ll~~aGf~~~~~~~~ 343 (354)
+++..||+++++.++
T Consensus 252 ~l~~~Gl~~i~~~~t 266 (287)
T COG4976 252 LLAASGLEVIAIEDT 266 (287)
T ss_pred HHHhcCceEEEeecc
Confidence 999999999998776
No 117
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.89 E-value=1.3e-08 Score=92.05 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=70.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-CCcceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-VPEADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-~~~~D~i~~~~~lh~ 259 (354)
++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++.+...+.... ..+||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999999887764 4458999999 888887764 34566666664332 2359999986543
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+....++.++.+.||| ||.+++...
T Consensus 236 ---~~l~~ll~~~~~~Lkp-gG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKP-GGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCC-CcEEEEEeC
Confidence 2356889999999999 999988653
No 118
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.88 E-value=4.8e-08 Score=86.28 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=80.1
Q ss_pred CCceEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHhhhccc----------------------------
Q 018565 189 GIETLVDIGGNDGT----TLRTLTKAFP-----RIRGINFDL-PHVVCVAEK---------------------------- 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 230 (354)
..-+|.-+||++|. ++..+.+..| .+++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999993 3444556665 478899999 788877652
Q ss_pred -------CCCeEEeecCCCCC--CC-cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 231 -------CHGVEHVGGDMFDG--VP-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 231 -------~~~v~~~~~d~~~~--~~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...|.|..+|..++ .+ +||+|+|.|||-+|+.+.-.+++++++..|+| ||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~-gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP-GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC-CCEEEEc
Confidence 35789999999984 34 49999999999999999999999999999999 9999983
No 119
>PRK00811 spermidine synthase; Provisional
Probab=98.85 E-value=1.5e-08 Score=91.34 Aligned_cols=98 Identities=26% Similarity=0.257 Sum_probs=75.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCC--C--CCcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFD--G--VPEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~--~--~~~~D~i 251 (354)
+++.+||+||||.|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ . ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3568999999999999999997655568999999 888887764 4689999999876 2 2359999
Q ss_pred EeccccccCChHH--HHHHHHHHHHhcCCCCceEEEE
Q 018565 252 IIKWVLHDWGDDE--CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 252 ~~~~~lh~~~~~~--~~~~L~~~~~~L~p~gG~lli~ 286 (354)
++...-+.-+... ..++++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~-gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE-DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC-CcEEEEe
Confidence 9865433222221 26789999999999 9987763
No 120
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.85 E-value=2.2e-08 Score=84.94 Aligned_cols=95 Identities=22% Similarity=0.301 Sum_probs=70.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeecCCCCC---------CC--cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG---------VP--EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~--~~D~i~~~ 254 (354)
..++.+|||+|||+|.++..+++++ +..+++++|+.+.. ...+++++.+|+.++ .+ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4577899999999999999998876 56789999994332 235688888888752 22 49999985
Q ss_pred cccc---cCCh------HHHHHHHHHHHHhcCCCCceEEEE
Q 018565 255 WVLH---DWGD------DECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 255 ~~lh---~~~~------~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...| .|.. +....+++++++.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP-KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC-CCEEEEE
Confidence 4322 1111 1236889999999999 9998875
No 121
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.83 E-value=2.4e-08 Score=88.37 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=73.6
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCCCC-----CcceEEEecccccc-
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFDGV-----PEADAAIIKWVLHD- 259 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~~~-----~~~D~i~~~~~lh~- 259 (354)
..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++ ...+++..+|+++.. +.||+|+++-....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 888888775 234688999988732 24999998643221
Q ss_pred -----CChH------------------HHHHHHHHHHHhcCCCCceEEEE
Q 018565 260 -----WGDD------------------ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 260 -----~~~~------------------~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.+++ ...++++.+.+.|+| ||++++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~-gG~l~l~ 215 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP-GGHLLVE 215 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 1111 134788888999999 9988863
No 122
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.81 E-value=5e-08 Score=90.12 Aligned_cols=98 Identities=14% Similarity=0.040 Sum_probs=74.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--cceEEEeccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP--EADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~i~~~~~ 256 (354)
..++.+|||.|||+|.++...+.. +.+++++|+ +.++..++. ...+++..+|+.+ +.+ .||+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 456789999999999998886654 678999999 888876653 2348889999988 543 4999999633
Q ss_pred ccc-------CChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 257 LHD-------WGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 257 lh~-------~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
... ...+...++|+.+.+.|+| ||++++.-
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~-gG~lv~~~ 294 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS-EGWIVYAV 294 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC-CcEEEEEE
Confidence 211 1123357899999999999 99998753
No 123
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.7e-07 Score=84.13 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=91.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----C-CCeEEeecCCCCCCC-cceEEEeccc--ccc--
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----C-HGVEHVGGDMFDGVP-EADAAIIKWV--LHD-- 259 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~v~~~~~d~~~~~~-~~D~i~~~~~--lh~-- 259 (354)
+|||+|||||..++.++.++|+.+++++|+ +..++.|+. . .++.++.+|.+++.. .||+|+++-. -..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 888888765 2 566677779999755 5999998522 111
Q ss_pred -C-C-----------------hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCccc
Q 018565 260 -W-G-----------------DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKE 320 (354)
Q Consensus 260 -~-~-----------------~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~ 320 (354)
. + -+...+++..+.+.|+| ||.+++ |.-.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~-~g~l~l-e~g~------------------------------ 240 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP-GGVLIL-EIGL------------------------------ 240 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC-CcEEEE-EECC------------------------------
Confidence 0 0 12356788888888998 766654 2210
Q ss_pred CCHHHHHHHHHHcC-CceeEEEEcCC-ceeEEE
Q 018565 321 RSLKEWDYVLRQAG-FSRYNITSIHA-VQSLIE 351 (354)
Q Consensus 321 ~t~~e~~~ll~~aG-f~~~~~~~~~~-~~~~i~ 351 (354)
-..+...+++.+.| |..+.+..-.. ...++.
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~ 273 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVL 273 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEE
Confidence 02567788999999 66666655433 333443
No 124
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.80 E-value=2.4e-08 Score=87.31 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=83.0
Q ss_pred CCceEEEecCCcc---HHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCC--eEEeecCCCCC---C--C---c-c-
Q 018565 189 GIETLVDIGGNDG---TTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHG--VEHVGGDMFDG---V--P---E-A- 248 (354)
Q Consensus 189 ~~~~vLDvG~G~G---~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~--v~~~~~d~~~~---~--~---~-~- 248 (354)
+..++||||||-= ..-.-..+..|+.+++.+|. |-++..++. .++ ..++.+|+.++ . | . .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 7789999999943 33333345689999999999 888887765 344 89999999984 1 1 1 2
Q ss_pred ----eEEEeccccccCCh-HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCH
Q 018565 249 ----DAAIIKWVLHDWGD-DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSL 323 (354)
Q Consensus 249 ----D~i~~~~~lh~~~~-~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~ 323 (354)
=.+++..+||+.+| ++...+++.++++|.| |+.|.|.....+.... . ............ .....||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap-GS~L~ish~t~d~~p~----~--~~~~~~~~~~~~-~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP-GSYLAISHATDDGAPE----R--AEALEAVYAQAG-SPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T-T-EEEEEEEB-TTSHH----H--HHHHHHHHHHCC-S----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC-CceEEEEecCCCCCHH----H--HHHHHHHHHcCC-CCceecCH
Confidence 36899999999987 6789999999999999 9999988776532211 0 112222222222 55688999
Q ss_pred HHHHHHHHHcCCceeE
Q 018565 324 KEWDYVLRQAGFSRYN 339 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~ 339 (354)
+|+.++|. ||+.++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999996 787764
No 125
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.1e-07 Score=81.76 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=86.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHH-HCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-C
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTK-AFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-V 245 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-~ 245 (354)
+..++.... ..++.+|+|.|.|+|.++..|++ -.|.-+++.+|. ++..+.|++ .+++++..+|+.+. .
T Consensus 83 ~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 83 AGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 345555666 88999999999999999999997 578889999999 888877765 56799999999983 3
Q ss_pred C-cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 246 P-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 246 ~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
+ ++|+|++ ++|++. +++.++.++|+| ||.+.+.-++.
T Consensus 161 ~~~vDav~L-----Dmp~PW--~~le~~~~~Lkp-gg~~~~y~P~v 198 (256)
T COG2519 161 EEDVDAVFL-----DLPDPW--NVLEHVSDALKP-GGVVVVYSPTV 198 (256)
T ss_pred ccccCEEEE-----cCCChH--HHHHHHHHHhCC-CcEEEEEcCCH
Confidence 3 5999998 667765 789999999999 99998866544
No 126
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=9.9e-08 Score=80.31 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=77.2
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC---c
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP---E 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~---~ 247 (354)
.++..+. .++..+|||||||+|..+.-|++.-. +++.++. ++..+.|++ ..+|.++.+|-...++ +
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 4455555 78889999999999999999988744 8888888 777777765 4569999999998543 5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
||.|+.....-..|+. +.+-||| ||++++-..
T Consensus 139 yD~I~Vtaaa~~vP~~--------Ll~QL~~-gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEA--------LLDQLKP-GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHH--------HHHhccc-CCEEEEEEc
Confidence 9999998877666642 4456899 999999654
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.75 E-value=5.5e-08 Score=88.75 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=70.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---CcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---PEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~~~D~i~~~~ 255 (354)
..+..+|||||||+|.++..+++..+. .+++++|. +++++.+++ .+++.++.+|..+.. .+||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 556789999999999999999998753 46899999 888877654 357899999987632 3599999876
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+++. ...+.+.|+| ||++++..
T Consensus 158 g~~~i--------p~~~~~~Lkp-gG~Lvv~~ 180 (322)
T PRK13943 158 GVDEV--------PETWFTQLKE-GGRVIVPI 180 (322)
T ss_pred chHHh--------HHHHHHhcCC-CCEEEEEe
Confidence 55443 2345678999 99988843
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=98.73 E-value=9.2e-08 Score=87.43 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=74.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------------CCCeEEeecCCCC--C-C-Ccce
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------------CHGVEHVGGDMFD--G-V-PEAD 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~--~-~-~~~D 249 (354)
.++.+||+||||.|..+..+++..+..+++.+|+ +++++.|+. .+|++++.+|..+ . . ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4568999999999999988888655678999999 888888773 4799999999886 2 2 3499
Q ss_pred EEEeccccc---cCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 250 AAIIKWVLH---DWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 250 ~i~~~~~lh---~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+|++...-. ....-...++++.+++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP-gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE-DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC-CcEEEEe
Confidence 999863211 01111235789999999999 9987764
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.72 E-value=7.7e-08 Score=80.10 Aligned_cols=88 Identities=15% Similarity=0.275 Sum_probs=64.2
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc--ce
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE--AD 249 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~--~D 249 (354)
.+++.++ ..+..+|||+|||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+. +|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 4455555 566789999999999999999987 568999999 778877764 3589999999998 5553 78
Q ss_pred EEEeccccccCChHHHHHHHH
Q 018565 250 AAIIKWVLHDWGDDECIKILK 270 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~ 270 (354)
.|+.+-.. +...+...++++
T Consensus 80 ~vi~n~Py-~~~~~~i~~~l~ 99 (169)
T smart00650 80 KVVGNLPY-NISTPILFKLLE 99 (169)
T ss_pred EEEECCCc-ccHHHHHHHHHh
Confidence 88765444 444443333333
No 130
>PLN02366 spermidine synthase
Probab=98.71 E-value=8.2e-08 Score=87.11 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=73.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---CC--CcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---GV--PEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~--~~~D~i 251 (354)
+++.+||+||||.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|... .. ..||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999987533457899999 778887764 3689999999754 23 259999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhcCCCCceEEE
Q 018565 252 IIKWVLHDWGDD--ECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 252 ~~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli 285 (354)
++-..-+..+.. -...+++.+++.|+| ||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p-gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP-GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC-CcEEEE
Confidence 985433322211 135789999999999 998765
No 131
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.71 E-value=1.6e-07 Score=85.44 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=78.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC----CCCeEEEeec-hHHhhhccc------CCCeEE--eecCCCC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF----PRIRGINFDL-PHVVCVAEK------CHGVEH--VGGDMFD 243 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~~v~~--~~~d~~~ 243 (354)
+.+...++ +...|+|+|||+|.-...|++.. ...+++.+|+ .+.++.+.. .+.+++ +.+||.+
T Consensus 68 ~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 45555444 55689999999998877766654 3467999999 556655432 345655 7788866
Q ss_pred C---CC------cceE-EEeccccccCChHHHHHHHHHHHH-hcCCCCceEEE-Eeee
Q 018565 244 G---VP------EADA-AIIKWVLHDWGDDECIKILKNCKE-AITKDKGKVII-VEAI 289 (354)
Q Consensus 244 ~---~~------~~D~-i~~~~~lh~~~~~~~~~~L~~~~~-~L~p~gG~lli-~e~~ 289 (354)
+ .+ ...+ +++.+.+.+++++++..+|+++++ .|+| |+.++| +|..
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~-~d~lLiG~D~~ 200 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP-SDSFLIGLDGC 200 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC-CCEEEEecCCC
Confidence 2 11 2445 466689999999999999999999 9999 998888 3543
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.71 E-value=5.6e-08 Score=83.24 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=73.1
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC--
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP-- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~-- 246 (354)
..+++.+. +.++.+|||||||+|..+.-+++.. +..+++.+|. +...+.+++ ..+|+++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 44556666 7889999999999999999998864 4456889998 888887765 4689999999887433
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+||.|++.......|. .+.+.|++ ||+|++.-
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~-gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP-GGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE-EEEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC-CcEEEEEE
Confidence 5999999887765443 24556899 99998843
No 133
>PRK03612 spermidine synthase; Provisional
Probab=98.71 E-value=1.3e-07 Score=92.51 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=74.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc-------------CCCeEEeecCCCC---CC-Ccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK-------------CHGVEHVGGDMFD---GV-PEA 248 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~---~~-~~~ 248 (354)
+++.+|||||||+|..+..+++ +|. .+++.+|+ +++++.+++ .+|++++.+|..+ .. ..|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3568999999999999999987 455 79999999 999988765 2689999999876 22 359
Q ss_pred eEEEeccccccCChH---HHHHHHHHHHHhcCCCCceEEEE
Q 018565 249 DAAIIKWVLHDWGDD---ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 249 D~i~~~~~lh~~~~~---~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
|+|++...-...+.. ...++++++++.||| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p-gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP-DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC-CeEEEEe
Confidence 999997433221111 124689999999999 9988764
No 134
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.70 E-value=7.9e-08 Score=86.23 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=74.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---C-CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---G-VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~-~~~~D~i~~ 253 (354)
++.+||+||||+|..+..+++..+..+++++|+ +++++.+++ .++++++.+|..+ . ...||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 456999999999999999988766678999999 888777664 3678888888765 1 235999998
Q ss_pred ccccccCChHH--HHHHHHHHHHhcCCCCceEEEE
Q 018565 254 KWVLHDWGDDE--CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 254 ~~~lh~~~~~~--~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...-..-+... ..++++.+++.|+| ||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~p-gG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNE-DGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCC-CcEEEEc
Confidence 76533222222 46889999999999 9988875
No 135
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.68 E-value=6.3e-07 Score=76.77 Aligned_cols=156 Identities=16% Similarity=0.191 Sum_probs=100.9
Q ss_pred hhHHHhhChHHHHHHHHHhhhchh----hhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHh
Q 018565 150 VWSYAAADAAHSKLINDAMACDTR----LAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVV 225 (354)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~m~~~~~----~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 225 (354)
.++.+.++|.....|+...+.... --...+++.+. ..+....|-|+|||.+.++.. ....+.-+|+-.
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a-- 209 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA-- 209 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhhc-----cccceeeeeeec--
Confidence 345556677666666655443221 22455666555 135678999999999998761 234577788731
Q ss_pred hhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhh
Q 018565 226 CVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKS 302 (354)
Q Consensus 226 ~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~ 302 (354)
.+-+++..|+.+ |.+ +.|++++|-.|-- .....++++++++|+| ||.++|.|...
T Consensus 210 ------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~-gG~l~IAEv~S------------ 267 (325)
T KOG3045|consen 210 ------VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKP-GGLLYIAEVKS------------ 267 (325)
T ss_pred ------CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhcc-CceEEEEehhh------------
Confidence 334467788888 655 4898877765542 3467899999999999 99999987531
Q ss_pred hhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcCCceeEEE
Q 018565 303 VRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIE 351 (354)
Q Consensus 303 ~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~ 351 (354)
+.-+...+.+.+...||.+....-....+.+.+
T Consensus 268 ----------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfe 300 (325)
T KOG3045|consen 268 ----------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFE 300 (325)
T ss_pred ----------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEE
Confidence 111344577888888988876544433333333
No 136
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.66 E-value=1.8e-07 Score=81.96 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=75.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---------CCcc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---------VPEA 248 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---------~~~~ 248 (354)
..+..+|||||||+|..+..+++..| +.+++.+|. ++.++.+++ .++++++.+|..+. .++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44678999999999999999998754 679999999 888887764 47899999999762 1359
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
|+|++-. +.+....++..+.+.|+| ||.+++-+.
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~-GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKV-GGIIAFDNT 179 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC-CeEEEEEcC
Confidence 9998843 234556889999999999 886655443
No 137
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=2.9e-07 Score=88.05 Aligned_cols=108 Identities=11% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC---C--Cc
Q 018565 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG---V--PE 247 (354)
Q Consensus 179 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~---~--~~ 247 (354)
+...++ ..++.+|||+|||+|..+..+++..++.+++++|. ++++..+++ ..+++++.+|..+. . .+
T Consensus 236 ~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 333444 45678999999999999999999988789999999 888877764 33578899998762 1 24
Q ss_pred ceEEEeccc------cc-------cCChHH-------HHHHHHHHHHhcCCCCceEEEEeee
Q 018565 248 ADAAIIKWV------LH-------DWGDDE-------CIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 248 ~D~i~~~~~------lh-------~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
||.|++.-. +. ....++ -.++|+++.+.||| ||+++++...
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp-GG~lvystcs 374 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP-GGTLLYATCS 374 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence 999985321 11 111221 24789999999999 9999987743
No 138
>PLN02672 methionine S-methyltransferase
Probab=98.65 E-value=3.1e-07 Score=95.19 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=88.8
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------------------CCCeEEeecCCCCCCC
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------------------CHGVEHVGGDMFDGVP 246 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~v~~~~~d~~~~~~ 246 (354)
+.+|||+|||+|..+..+++++|..+++++|+ +.+++.++. .+|++++.+|++++.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 888877643 1479999999998543
Q ss_pred ----cceEEEeccc--ccc----CC--------------------------hH----HHHHHHHHHHHhcCCCCceEEEE
Q 018565 247 ----EADAAIIKWV--LHD----WG--------------------------DD----ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 247 ----~~D~i~~~~~--lh~----~~--------------------------~~----~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.||+|+++-. ... ++ ++ -..+++..+.+.|+| ||.+++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p-gG~l~l- 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP-MGIMIF- 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC-CCEEEE-
Confidence 4999988532 110 00 01 125677778888888 886654
Q ss_pred eeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH-HHHHHcCCceeEEEEcC
Q 018565 287 EAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD-YVLRQAGFSRYNITSIH 344 (354)
Q Consensus 287 e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~-~ll~~aGf~~~~~~~~~ 344 (354)
|.-. ...+.+. +++++.||+.+++|...
T Consensus 277 EiG~------------------------------~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 277 NMGG------------------------------RPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred EECc------------------------------cHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 3210 0134566 58888999998888764
No 139
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.64 E-value=5.1e-07 Score=78.19 Aligned_cols=146 Identities=17% Similarity=0.203 Sum_probs=91.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCC-CcceEEEeccccccCChHHHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGV-PEADAAIIKWVLHDWGDDECI 266 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~-~~~D~i~~~~~lh~~~~~~~~ 266 (354)
...++||||+|.|..+..++..+.+ +.+.+. +.|..+.++ ..++++..+-.... ..||+|.|.|+|-.-.++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4578999999999999999988775 555666 777777764 44555543323322 359999999999664444 5
Q ss_pred HHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH-HhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 267 KILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM-VMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 267 ~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
.+|+.++++|+| +|++++.= ++|-...|+. .. .....- ..+...+..-+-..+.+.+.|+.+||++.++..+|
T Consensus 169 ~LL~~i~~~l~p-~G~lilAv-VlP~~pyVE~--~~-g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALKP-NGRLILAV-VLPFRPYVEF--GG-GKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhCC-CCEEEEEE-EecccccEEc--CC-CCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 899999999999 99888743 2221110000 00 000000 00111011111124455588999999999998876
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=98.64 E-value=1.8e-07 Score=80.53 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=71.6
Q ss_pred CceEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC-cceEEEeccccccCCh
Q 018565 190 IETLVDIGGNDGTTLRTLTKAF---PRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDWGD 262 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~~~ 262 (354)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.++. ..++++..+|+.. +.. .||+|+++-..+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998874 4678999999 888888876 4678999999987 443 5999999766653221
Q ss_pred ----------HHHHHHHHHHHHhcCCCCceEE
Q 018565 263 ----------DECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 263 ----------~~~~~~L~~~~~~L~p~gG~ll 284 (354)
.-...+++++.++++| | .++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~-G-~~I 159 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ-G-TFI 159 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC-C-EEE
Confidence 1245688899987776 4 453
No 141
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.64 E-value=1.7e-07 Score=79.57 Aligned_cols=96 Identities=21% Similarity=0.319 Sum_probs=69.4
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C--CC--cceEEEecccc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G--VP--EADAAIIKWVL 257 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~--~~--~~D~i~~~~~l 257 (354)
..+||||||.|.++..+++.+|+..++|+|+ ...+..+.. ..++.++.+|... + ++ +.|-|++...=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 4899999999999999999999999999999 555554432 6899999999877 1 23 36666553321
Q ss_pred ccCChH-------HHHHHHHHHHHhcCCCCceEEEEee
Q 018565 258 HDWGDD-------ECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 258 h~~~~~-------~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
-|+.. -...+|+.+.+.|+| ||.|.+...
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~-gG~l~~~TD 134 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKP-GGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEE-EEEEEEEES
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCC-CCEEEEEeC
Confidence 12221 135789999999999 999988653
No 142
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.63 E-value=4.4e-07 Score=79.42 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=77.2
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHH-HCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTK-AFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GV- 245 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~- 245 (354)
..++..++ ..++.+|||.|.|+|.++..|++ -.|.-++.-+|. ++..+.|++ .++|++...|+.+ .+
T Consensus 30 ~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 30 SYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 44556666 88999999999999999999997 468889999999 777777765 5789999999975 33
Q ss_pred ----CcceEEEeccccccCChHHHHHHHHHHHHhc-CCCCceEEEEeee
Q 018565 246 ----PEADAAIIKWVLHDWGDDECIKILKNCKEAI-TKDKGKVIIVEAI 289 (354)
Q Consensus 246 ----~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L-~p~gG~lli~e~~ 289 (354)
..+|.|++ ++|++. ..+..+.++| +| ||++.+.-++
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~-gG~i~~fsP~ 148 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP-GGRICCFSPC 148 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE-EEEEEEEESS
T ss_pred ccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC-CceEEEECCC
Confidence 24899988 667665 6788999999 89 9999886543
No 143
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.62 E-value=1.6e-07 Score=79.82 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=67.4
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeec--CCCC-C----C--C-cceEEEeccccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGG--DMFD-G----V--P-EADAAIIKWVLH 258 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~--d~~~-~----~--~-~~D~i~~~~~lh 258 (354)
...++|||||+|..+..++..+. ++++.|. +.|+..+++..++++... .+.+ + . + +.|+|++..++|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 34899999999977777777654 6899999 999999988555554332 2222 1 1 2 489999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
-|+-+ ++++.++++||++||.+.+
T Consensus 112 WFdle---~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 112 WFDLE---RFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred hhchH---HHHHHHHHHcCCCCCEEEE
Confidence 87754 7899999999983445544
No 144
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.62 E-value=1e-07 Score=79.76 Aligned_cols=93 Identities=14% Similarity=0.191 Sum_probs=70.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCC--eEEeecCCCC--CCCc--ceEEEeccccc---
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHG--VEHVGGDMFD--GVPE--ADAAIIKWVLH--- 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--v~~~~~d~~~--~~~~--~D~i~~~~~lh--- 258 (354)
.+.-|||||||+|..+..+... +...+++|+ |.|++.+.+ .. -.++.+|+-+ |+++ ||.++....+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3789999999999988887764 678999999 999999875 22 3467778877 4433 99877654442
Q ss_pred ------cCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 259 ------DWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 259 ------~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
|.|......++..++.+|++ |++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~r-g~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKR-GARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhcc-CceeEE
Confidence 23455667788899999999 888776
No 145
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.61 E-value=3.1e-08 Score=63.90 Aligned_cols=46 Identities=46% Similarity=0.923 Sum_probs=38.8
Q ss_pred HHHHHHHHcChhhhhhhCC-CCCCHHHHHhHcC-CC---cccHHHHHHHHh
Q 018565 32 AVVKCAVELGIAEAVEEKG-SPITLNELASALK-CD---PSLLQRIMRFLI 77 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~-~~~t~~elA~~~g-~~---~~~l~~lL~~L~ 77 (354)
.+|++|+||||||.|.+.| ++.|+.||+++++ .+ +..+.|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 3799999999999999875 7999999999999 44 458899999985
No 146
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.58 E-value=2.7e-07 Score=84.53 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=71.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------------CCCeEEeecCCCCC-------
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------------CHGVEHVGGDMFDG------- 244 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~d~~~~------- 244 (354)
+..+|||+|||-|.-+....... --.++++|+ +..++.|++ .-...++.+|.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999999888777753 346899999 666666543 12456677877752
Q ss_pred CC--cceEEEeccccccC--ChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 245 VP--EADAAIIKWVLHDW--GDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 245 ~~--~~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+ .||+|-|...+|+. +.+.+..+|+++.+.|+| ||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~-GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP-GGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 12 49999999999984 566788899999999999 99888754
No 147
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=5.2e-07 Score=86.81 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=75.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC---CC-cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG---VP-EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~---~~-~~D~i~~~ 254 (354)
..++.+|||+|||+|..+..+++.. +..+++++|+ +++++.+++ ..+++++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4567899999999999999999876 6779999999 887776654 24599999998762 33 59999874
Q ss_pred ccc------cc-------CChHH-------HHHHHHHHHHhcCCCCceEEEEeee
Q 018565 255 WVL------HD-------WGDDE-------CIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 255 ~~l------h~-------~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
-.. .+ ++... ...+|+++.+.||| ||+++.....
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK-GGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEcCC
Confidence 321 11 11111 24689999999999 9999876543
No 148
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=5.7e-07 Score=86.49 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=76.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CC-CcceEEEec--
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GV-PEADAAIIK-- 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-~~~D~i~~~-- 254 (354)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +++++.+++ ..+|+++.+|..+ +. ..||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44668999999999999998888653 458999999 888877764 2468999999877 32 249999862
Q ss_pred ----ccc-------ccCChHHH-------HHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 255 ----WVL-------HDWGDDEC-------IKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 255 ----~~l-------h~~~~~~~-------~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
.++ +.++.+.. .++|+++.+.||| ||+++...-...
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP-GGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCC
Confidence 111 12233222 3689999999999 999999775443
No 149
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.56 E-value=3.7e-07 Score=76.17 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=68.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------CCCeEEeecCCCCCC------C-cceE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------CHGVEHVGGDMFDGV------P-EADA 250 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~------~-~~D~ 250 (354)
...+.+|||+|||+|..+..+++..+..+++..|.+++++..+. ..++++...|..++. + +||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34678999999999999999988877788999999656665442 467888888876621 2 4999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 251 AIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
|+.+.++++ ++....+++.+.+.|+| +|.+++.-..+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~-~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP-NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT--TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC-CCEEEEEeCEe
Confidence 999999996 67788999999999999 88877766554
No 150
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.55 E-value=5.4e-07 Score=86.19 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=76.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CC--CeEEeecCCCC-CC----CcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CH--GVEHVGGDMFD-GV----PEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~--~v~~~~~d~~~-~~----~~~D~i~~ 253 (354)
..++.+|||+|||+|..+..+++..+..+++++|. ++++..+++ .- ++.+..+|... +. ..||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 45678999999999999999999888779999999 888777654 21 23446677654 22 24999986
Q ss_pred c------cccccCCh-------HH-------HHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 254 K------WVLHDWGD-------DE-------CIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 254 ~------~~lh~~~~-------~~-------~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
. .+++..|+ ++ -.++|+++.+.||| ||+|++++....
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp-gG~lvystcs~~ 372 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT-GGTLVYATCSVL 372 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCC
Confidence 2 34554333 11 25799999999999 999999876554
No 151
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.53 E-value=1.8e-06 Score=72.78 Aligned_cols=123 Identities=13% Similarity=0.181 Sum_probs=92.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCC-CCC-----cceEEEeccccccCCh
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD-GVP-----EADAAIIKWVLHDWGD 262 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~-----~~D~i~~~~~lh~~~~ 262 (354)
...++|||||=+...... .++-..++.+|+.. ..-.+...||++ |.| .||+|.++-||.+.|+
T Consensus 51 ~~lrlLEVGals~~N~~s---~~~~fdvt~IDLns--------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACS---TSGWFDVTRIDLNS--------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred ccceEEeecccCCCCccc---ccCceeeEEeecCC--------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 347999999876554332 35566789999832 122346678888 765 3999999999999985
Q ss_pred H-HHHHHHHHHHHhcCCCCce-----EEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCc
Q 018565 263 D-ECIKILKNCKEAITKDKGK-----VIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFS 336 (354)
Q Consensus 263 ~-~~~~~L~~~~~~L~p~gG~-----lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~ 336 (354)
+ +..+.++++++.|+| +|. |+|+-+.. +..|.+-.+.+.|..+++..||.
T Consensus 120 p~~RG~Ml~r~~~fL~~-~g~~~~~~LFlVlP~~-----------------------Cv~NSRy~~~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLKP-PGLSLFPSLFLVLPLP-----------------------CVTNSRYMTEERLREIMESLGFT 175 (219)
T ss_pred HHHHHHHHHHHHHHhCC-CCccCcceEEEEeCch-----------------------HhhcccccCHHHHHHHHHhCCcE
Confidence 4 788999999999999 898 77753211 11466777899999999999999
Q ss_pred eeEEEEcCCc
Q 018565 337 RYNITSIHAV 346 (354)
Q Consensus 337 ~~~~~~~~~~ 346 (354)
.++....+..
T Consensus 176 ~~~~~~~~Kl 185 (219)
T PF11968_consen 176 RVKYKKSKKL 185 (219)
T ss_pred EEEEEecCeE
Confidence 9988776553
No 152
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.50 E-value=1e-06 Score=80.20 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=90.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEee----cCCCCCC----CcceEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVG----GDMFDGV----PEADAA 251 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~----~d~~~~~----~~~D~i 251 (354)
...++||||||+|.....++.+.++++++++|+ +..++.|+. .++|++.. .+++... ..||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999999998888888889999999999 888887764 24677754 2334321 249999
Q ss_pred EeccccccCChHH---HHHHHHHHH----------------HhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh
Q 018565 252 IIKWVLHDWGDDE---CIKILKNCK----------------EAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM 312 (354)
Q Consensus 252 ~~~~~lh~~~~~~---~~~~L~~~~----------------~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (354)
+|+=.+|.-..+. ...-.+++. +++.+ ||.+-++..+..+... ...-..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~-GGe~~fi~~mi~eS~~----------~~~~~gw 262 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE-GGEVAFIKRMIEESKA----------FAKQVLW 262 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC-CcEeeeehHhhHHHHH----------HHhhCcE
Confidence 9998887633321 112223322 22334 5554443333222110 0000011
Q ss_pred cccCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 313 AHTNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 313 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
..+.-|+.-+...+.+.|++.|.+.++++.+
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1112346668999999999999988888887
No 153
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=9.7e-07 Score=84.61 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=77.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C----C--CcceEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G----V--PEADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~----~--~~~D~i 251 (354)
..++.+|||+|||+|..+..+++... ..+++++|+ +++++.+++ ..+|+++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45678999999999999999998753 468999999 888877654 3568999999876 3 1 249999
Q ss_pred Eec------cccccCCh-------HH-------HHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 252 IIK------WVLHDWGD-------DE-------CIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 252 ~~~------~~lh~~~~-------~~-------~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
++. .+++..++ +. -.++|+++.+.||| ||+|+.++-..
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp-gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP-GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCC
Confidence 973 24443332 11 25889999999999 99998876443
No 154
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.48 E-value=6.2e-07 Score=76.47 Aligned_cols=108 Identities=16% Similarity=0.229 Sum_probs=64.8
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------------CCCeEEeecCC
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------------CHGVEHVGGDM 241 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d~ 241 (354)
.+++.+. +.+...++|+|||.|......+..++.-+++|+++ +.....++. ..++++..+||
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 4445555 66788999999999999888887766556999998 655444321 46788999999
Q ss_pred CC-C-----CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 242 FD-G-----VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 242 ~~-~-----~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
.+ + +.++|+|++++.+. +++ ...-|.+....||| |.+++-.....+
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F--~~~-l~~~L~~~~~~lk~-G~~IIs~~~~~~ 162 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCF--DPD-LNLALAELLLELKP-GARIISTKPFCP 162 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT---HH-HHHHHHHHHTTS-T-T-EEEESS-SS-
T ss_pred cccHhHhhhhcCCCEEEEecccc--CHH-HHHHHHHHHhcCCC-CCEEEECCCcCC
Confidence 98 3 23589999999864 454 44556777788998 776655444433
No 155
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.47 E-value=1.4e-06 Score=77.78 Aligned_cols=103 Identities=15% Similarity=0.220 Sum_probs=75.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~~~D~i~~~~ 255 (354)
..++.+|||+|||+|..+..+++... ...++++|+ +..++.+++ ..++++...|... + .+.||.|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999988764 358999999 888776654 3568888888765 2 34599998732
Q ss_pred c------cc-------cCChHHH-------HHHHHHHHHhcCCCCceEEEEeeee
Q 018565 256 V------LH-------DWGDDEC-------IKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 256 ~------lh-------~~~~~~~-------~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
. +. .|.++.. .++|+++.+.||| ||+|+.+.-..
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP-GGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCC
Confidence 1 11 1233222 4699999999999 99998765443
No 156
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.46 E-value=1.9e-06 Score=82.86 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=68.9
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC-----
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG----- 244 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----- 244 (354)
..+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +++++.+++ .+++++..+|+.+.
T Consensus 287 ~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 287 ARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 33444444 4566899999999999999999875 58999999 888888764 35799999998652
Q ss_pred C--CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 245 V--PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 245 ~--~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+ ..||+|++.-. -....++++.+.+ ++| ++.++++
T Consensus 363 ~~~~~fD~Vi~dPP-----r~g~~~~~~~l~~-~~~-~~ivyvS 399 (443)
T PRK13168 363 WALGGFDKVLLDPP-----RAGAAEVMQALAK-LGP-KRIVYVS 399 (443)
T ss_pred hhcCCCCEEEECcC-----CcChHHHHHHHHh-cCC-CeEEEEE
Confidence 2 24899987322 1112345555555 577 6666663
No 157
>PLN02476 O-methyltransferase
Probab=98.46 E-value=4.5e-06 Score=74.30 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=76.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C------Ccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V------PEA 248 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~------~~~ 248 (354)
..+..+|||||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.||..+ + . ++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45679999999999999999998765 567899998 777777764 5799999999876 1 1 359
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
|+|++-. +.......+..+.+.|+| ||.+++ |.++
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~-GGvIV~-DNvL 230 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV-GGVIVM-DNVL 230 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC-CcEEEE-ecCc
Confidence 9999843 355678889999999999 876555 4443
No 158
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.43 E-value=1.9e-06 Score=82.34 Aligned_cols=103 Identities=11% Similarity=0.150 Sum_probs=75.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C-C--CcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G-V--PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~-~--~~~D~i~~~ 254 (354)
..++.+|||+|||+|..+..+++.. +..+++++|+ ++.++.+++ ..++++..+|..+ + . ..||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4567899999999999999999875 4678999999 888877764 2468899999876 3 1 249999872
Q ss_pred cc------ccc-------CChHH-------HHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 WV------LHD-------WGDDE-------CIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 ~~------lh~-------~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
-. +.. ++.+. -.++|.++.+.||| ||.|+.+.-..
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK-GGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECCC
Confidence 21 211 12111 15779999999999 99987766544
No 159
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.43 E-value=1.6e-06 Score=77.34 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=63.3
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCcceE
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPEADA 250 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~~D~ 250 (354)
+.+++.+. ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 44555555 556789999999999999999998 357999999 788877764 3689999999998 7777898
Q ss_pred EEeccccccCChH
Q 018565 251 AIIKWVLHDWGDD 263 (354)
Q Consensus 251 i~~~~~lh~~~~~ 263 (354)
|+++-. ++.+.+
T Consensus 95 Vv~NlP-y~i~s~ 106 (258)
T PRK14896 95 VVSNLP-YQISSP 106 (258)
T ss_pred EEEcCC-cccCcH
Confidence 877544 444433
No 160
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.41 E-value=6.4e-07 Score=76.50 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=74.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-------CCcce
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-------VPEAD 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-------~~~~D 249 (354)
.++.+||+||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+ + .++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4678999999999999999999876 589999999 878777765 5799999999875 1 13599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
+|++-. +.......+..+.+.|+| ||.+ |+|.+
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~-ggvi-i~DN~ 156 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRP-GGVI-IADNV 156 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEE-EEEE-EEETT
T ss_pred EEEEcc-----cccchhhHHHHHhhhccC-CeEE-EEccc
Confidence 999954 355667889999999999 6655 44443
No 161
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.41 E-value=1.6e-06 Score=77.04 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=61.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCcce-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPEAD- 249 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~~D- 249 (354)
..+++.++ ..+..+|||||||+|.++..++++.+ +++++|. +.+++.++. ..+++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 45555555 56778999999999999999999876 4888888 777777664 3789999999998 555566
Q ss_pred -EEEeccccccCChH
Q 018565 250 -AAIIKWVLHDWGDD 263 (354)
Q Consensus 250 -~i~~~~~lh~~~~~ 263 (354)
.++++|.-++++.+
T Consensus 95 ~~~vvsNlPy~i~~~ 109 (253)
T TIGR00755 95 QLKVVSNLPYNISSP 109 (253)
T ss_pred cceEEEcCChhhHHH
Confidence 34445555554443
No 162
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.40 E-value=1.2e-06 Score=78.57 Aligned_cols=82 Identities=10% Similarity=0.140 Sum_probs=61.2
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCCcc--e
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVPEA--D 249 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~~~--D 249 (354)
..+++.+. ..++.+|||||||+|.++..++++.+ +++++|+ +.+++.+++ .++++++.+|+.+ +.+.+ |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 34455555 56678999999999999999999865 8899999 888888765 3689999999998 55543 5
Q ss_pred EEEeccccccCChH
Q 018565 250 AAIIKWVLHDWGDD 263 (354)
Q Consensus 250 ~i~~~~~lh~~~~~ 263 (354)
.|+. |.-++.+.+
T Consensus 108 ~vv~-NlPY~iss~ 120 (272)
T PRK00274 108 KVVA-NLPYNITTP 120 (272)
T ss_pred eEEE-eCCccchHH
Confidence 5554 444544433
No 163
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.39 E-value=4.6e-06 Score=66.96 Aligned_cols=113 Identities=17% Similarity=0.220 Sum_probs=91.0
Q ss_pred hhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-C-----
Q 018565 174 LAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-G----- 244 (354)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~----- 244 (354)
..++.+...++ ...+.-|||+|.|+|.++.+++++ .+.-..+.++. ++......+ .+.+.++.||.++ .
T Consensus 35 ~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 35 ILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence 34556666666 667789999999999999999886 35556788887 777777665 6777799999887 3
Q ss_pred C--CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 245 V--PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 245 ~--~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
. +.||.|++.-.+-++|.....++|..+...|++ ||.++-....
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~-gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA-GGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC-CCeEEEEEec
Confidence 2 239999999999999999999999999999999 9988876543
No 164
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.38 E-value=2e-06 Score=73.51 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=79.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEee-cCCCC--C---CCcceEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVG-GDMFD--G---VPEADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~-~d~~~--~---~~~~D~i 251 (354)
..+.++||+||.+.|.-+..++...| +.+.+.+|. ++..+.|++ .++|++.. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 55789999999999999999999999 888999999 888888875 57788888 57766 2 3469999
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
++-. ....-.+.|..+.+.|+| || |+++|.++..
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~-GG-liv~DNvl~~ 170 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRP-GG-LIVADNVLFG 170 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCC-Cc-EEEEeecccC
Confidence 9843 455667899999999999 66 5555655544
No 165
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.38 E-value=4.4e-06 Score=74.24 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=74.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCCc-ceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVPE-ADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~~-~D~i~~~~~lh~ 259 (354)
..+.|||||||+|.++...+++. .-++..++..+|.+.|+. .+||.++.|.+.+ +.|+ .|+|+.--.-..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 35789999999999998887764 346788888888888775 6899999999999 7775 999988655444
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+-.+...+-.-.+++.||| .|+++=
T Consensus 256 L~NERMLEsYl~Ark~l~P-~GkMfP 280 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKP-NGKMFP 280 (517)
T ss_pred hhhHHHHHHHHHHHhhcCC-CCcccC
Confidence 4456666666678899999 898763
No 166
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.1e-07 Score=73.89 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=71.4
Q ss_pred hcCCCccCCCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHhhhccc----------------CCCeEEeecCC
Q 018565 181 EGCPEVFDGIETLVDIGGNDGTTLRTLTKA--FPRIRGINFDL-PHVVCVAEK----------------CHGVEHVGGDM 241 (354)
Q Consensus 181 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~d~ 241 (354)
+.++..+.++.+.||||+|+|.++..+++- .++...+++|. |+.++..++ ..++.++.||-
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 333334678899999999999999888753 24444488998 888876553 46788899999
Q ss_pred CCC---CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 242 FDG---VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 242 ~~~---~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
..- ..+||.|.+... +.++.+++..-|+| ||+++|
T Consensus 154 r~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~-gGrlli 191 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKP-GGRLLI 191 (237)
T ss_pred cccCCccCCcceEEEccC--------ccccHHHHHHhhcc-CCeEEE
Confidence 883 346999998643 33566677778899 999998
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.34 E-value=3e-06 Score=80.88 Aligned_cols=130 Identities=13% Similarity=0.153 Sum_probs=81.7
Q ss_pred ChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC----CCCeEEEeec-hH
Q 018565 149 DVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF----PRIRGINFDL-PH 223 (354)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~ 223 (354)
..|+.+++++..-..|.+|+... + ....+.-. .......|+|||||+|-++...+++. ...++.+++- +.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~a---l-~D~~~~~~-~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEA---L-KDRVRKNS-YSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHH---H-HHHHTTS--SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHH---H-Hhhhhhcc-ccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 45788888888877777776431 1 11111111 01135789999999999987776643 3568899987 44
Q ss_pred Hhhhc----cc---CCCeEEeecCCCC-CCC-cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEE
Q 018565 224 VVCVA----EK---CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 224 ~~~~a----~~---~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~ll 284 (354)
+.... +. .++|+++.+|+.+ ..| .+|+|+.-..=.....+-..+.|....+.||| ||.++
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp-~Gi~I 294 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP-DGIMI 294 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE-EEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC-CCEEe
Confidence 43322 11 6899999999999 555 59999876554333345566788899999999 76443
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.34 E-value=2.1e-06 Score=74.23 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=70.2
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CC-CeEEeecCCCC--C--CC--cceEEEecccc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CH-GVEHVGGDMFD--G--VP--EADAAIIKWVL 257 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-~v~~~~~d~~~--~--~~--~~D~i~~~~~l 257 (354)
..+||||||.|.++..+++++|+..++|+++ ...+..+.. .- ++.++++|... + ++ +-|-|+++..=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999999 444444322 34 89999998876 2 22 35666553321
Q ss_pred ccCChHH-------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWGDDE-------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
-|+... -..+|+.+.+.|+| ||.|.+..
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~-gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP-GGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC-CCEEEEEe
Confidence 133221 24789999999999 99998854
No 169
>PRK04148 hypothetical protein; Provisional
Probab=98.30 E-value=6.8e-06 Score=64.57 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=69.9
Q ss_pred HHHhcCCCccCCCceEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCCC----cceEE
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGT-TLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGVP----EADAA 251 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~----~~D~i 251 (354)
.+.+.+. .....++||||||+|. .+..|.+. +..++++|+ +..++.+++ ..++++.+|++++-. ++|+|
T Consensus 7 ~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 7 FIAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred HHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEE
Confidence 3444444 2345789999999996 77777764 679999999 888887764 457899999999633 58999
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
...+ |+.+...-+.++.+... .-++|...
T Consensus 82 ysir-----pp~el~~~~~~la~~~~---~~~~i~~l 110 (134)
T PRK04148 82 YSIR-----PPRDLQPFILELAKKIN---VPLIIKPL 110 (134)
T ss_pred EEeC-----CCHHHHHHHHHHHHHcC---CCEEEEcC
Confidence 9876 35556666666766553 45666443
No 170
>PLN02823 spermine synthase
Probab=98.25 E-value=4.7e-06 Score=76.58 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC--C-C-CcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD--G-V-PEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~-~-~~~D~i~~ 253 (354)
++.+||.||||.|..+..+++..+..+++.+|+ +++++.+++ .+|++++.+|... . . ..||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 568999999999999999998666678999999 899888874 4789999998877 2 2 25999998
Q ss_pred ccccccCC--hH---HHHHHHH-HHHHhcCCCCceEEE
Q 018565 254 KWVLHDWG--DD---ECIKILK-NCKEAITKDKGKVII 285 (354)
Q Consensus 254 ~~~lh~~~--~~---~~~~~L~-~~~~~L~p~gG~lli 285 (354)
-.. ..+. .. --.++++ .+++.|+| ||.+++
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p-~Gvlv~ 218 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNP-GGIFVT 218 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCC-CcEEEE
Confidence 631 1110 00 1246787 88999999 987665
No 171
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.25 E-value=5.1e-06 Score=75.11 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=66.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPE 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~ 247 (354)
..+++... ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 44555555 5677899999999999999999874 46899998 788877654 3689999999998 6677
Q ss_pred ceEEEeccccccCChHHHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKIL 269 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L 269 (354)
+|+|++ +.-++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 897765 555666666555555
No 172
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.23 E-value=5e-06 Score=73.64 Aligned_cols=96 Identities=20% Similarity=0.273 Sum_probs=72.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHhhhccc--------CC----CeEEeecCCCCC-----C----
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLP-HVVCVAEK--------CH----GVEHVGGDMFDG-----V---- 245 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~--------~~----~v~~~~~d~~~~-----~---- 245 (354)
++...++|+|||-|.-++..-++. --.++++|++ -.+..++. .. .+.|..+|.+.. +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 466789999999999888776652 2368999994 44555553 11 367888888762 2
Q ss_pred CcceEEEecccccc-C-ChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 246 PEADAAIIKWVLHD-W-GDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 246 ~~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
|.||+|-|..++|+ | +.+.+..+|+++.+.|+| ||.++-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp-GG~FIg 235 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP-GGVFIG 235 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC-CcEEEE
Confidence 23999999999998 3 466789999999999999 887664
No 173
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.19 E-value=5.3e-06 Score=70.56 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=65.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---C-cceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---P-EADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~-~~D~i~~~~~l 257 (354)
...+|||+|||+|.++..++.+.. .+++++|. ++.++.+++ ..+++++.+|+++.. . +||+|++.-..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666543 58999998 777776654 357999999987622 2 49999987653
Q ss_pred ccCChHHHHHHHHHHHH--hcCCCCceEEEEeee
Q 018565 258 HDWGDDECIKILKNCKE--AITKDKGKVIIVEAI 289 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~--~L~p~gG~lli~e~~ 289 (354)
+. .....+++.+.+ .|+| ++ ++++|..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~-~~-iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLAD-EA-LIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCC-Cc-EEEEEec
Confidence 32 223344555544 3788 66 4555543
No 174
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.17 E-value=1.2e-05 Score=71.77 Aligned_cols=96 Identities=25% Similarity=0.337 Sum_probs=77.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---CCC-cceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---GVP-EADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~~-~~D~i~~ 253 (354)
+.++||-||+|.|.++.++++..+--+++.+|+ +.+++.+++ .+|++++.+|-.+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 347999999999999999999988889999999 999998875 4899999999877 344 4999998
Q ss_pred ccccccCChH---HHHHHHHHHHHhcCCCCceEEEE
Q 018565 254 KWVLHDWGDD---ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 254 ~~~lh~~~~~---~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
-..=.. .+. --..+++.++++|+| +|.++..
T Consensus 156 D~tdp~-gp~~~Lft~eFy~~~~~~L~~-~Gi~v~q 189 (282)
T COG0421 156 DSTDPV-GPAEALFTEEFYEGCRRALKE-DGIFVAQ 189 (282)
T ss_pred cCCCCC-CcccccCCHHHHHHHHHhcCC-CcEEEEe
Confidence 654321 110 125899999999999 8877765
No 175
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.17 E-value=1e-05 Score=72.84 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=69.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CC--CcceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GV--PEADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~--~~~D~i~~~~~lh 258 (354)
..+.|||||||+|.++...+++. ..++.++|-.++++.+.+ .+.|+++.|.+.+ .. +..|+|+.-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 56899999999999999999986 457899998777776664 5679999998887 44 4599998866544
Q ss_pred cCC-hHHHHHHHHHHHHhcCCCCceEE
Q 018565 259 DWG-DDECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 259 ~~~-~~~~~~~L~~~~~~L~p~gG~ll 284 (354)
.+- +.-...+|-.=-+.|+| ||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~-~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE-GGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC-CceEc
Confidence 322 33333444444478999 88664
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.14 E-value=1e-05 Score=70.99 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=75.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--CC--------Cc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--GV--------PE 247 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~~--------~~ 247 (354)
..+..+||+||+++|..+..+++.. ++.+++.+|. ++....|++ .++|+++.||..+ +. ++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3457899999999999999999876 4678999998 777777664 5899999998876 21 35
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
||+|++-. ........+..+.+.|+| ||. +|+|.++
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~-GGv-iv~DNvl 192 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV-GGV-IGYDNTL 192 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC-CeE-EEEcCCC
Confidence 99999853 345567888888999999 765 5555443
No 177
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.1e-05 Score=66.37 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=57.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCCcceEEEeccccccC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVPEADAAIIKWVLHDW 260 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~ 260 (354)
.+.+|+|+|||+|.+++..+-..| .+++++|+ ++.++.+++ ..+++|+..|+.+-...+|.++++-.+-.+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~ 121 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccc
Confidence 567899999999999998777654 47899999 999988876 568999999998866678888876655443
No 178
>PRK00536 speE spermidine synthase; Provisional
Probab=98.13 E-value=1.7e-05 Score=70.01 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=69.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCCC-CCcceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFDG-VPEADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~-~~~~D~i~~~~ 255 (354)
+++.+||=||||.|..+.++++. |. +++.+|+ +++++.+++ .+|++++.. +.+. ...||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 46799999999999999999996 54 9999999 888887775 688888862 3222 24699999864
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
. ++ ..+.+.++++|+| ||.++..
T Consensus 148 ~----~~---~~fy~~~~~~L~~-~Gi~v~Q 170 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKE-DGVFISV 170 (262)
T ss_pred C----CC---hHHHHHHHHhcCC-CcEEEEC
Confidence 3 12 3678999999999 9877763
No 179
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.10 E-value=1.9e-05 Score=74.48 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=69.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------C-CCeEEeecCCCCC---C----CcceEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------C-HGVEHVGGDMFDG---V----PEADAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~~---~----~~~D~i~ 252 (354)
.+.+|||+|||+|.++...+.. ...+++.+|+ +.+++.+++ . ++++++.+|+++. . ..||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999998876643 3458999999 888887764 1 4789999999872 1 2499999
Q ss_pred eccccccCCh-------HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 253 IKWVLHDWGD-------DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 253 ~~~~lh~~~~-------~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.-.-..-+. .....+++.+.+.|+| ||.++.+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~-gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNP-GGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC-CeEEEEEe
Confidence 8643211111 1234566678899999 99888644
No 180
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.09 E-value=3.6e-06 Score=73.91 Aligned_cols=91 Identities=18% Similarity=0.130 Sum_probs=59.8
Q ss_pred EeecCCCC--CC------Cc-ceEEEeccccccC--ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhh
Q 018565 236 HVGGDMFD--GV------PE-ADAAIIKWVLHDW--GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVR 304 (354)
Q Consensus 236 ~~~~d~~~--~~------~~-~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~ 304 (354)
++..|..+ |. |+ ||++++..+|... +.+.-.+.++++.++||| ||.|++....-.....
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp-GG~Lil~~~l~~t~Y~--------- 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP-GGHLILAGVLGSTYYM--------- 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE-EEEEEEEEESS-SEEE---------
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC-CcEEEEEEEcCceeEE---------
Confidence 56678877 22 33 9999999988764 345678999999999999 9999998764322111
Q ss_pred hhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEE
Q 018565 305 LMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 305 ~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 342 (354)
..-.. ...-..+.+.+.+.++++||.+.+...
T Consensus 208 --vG~~~----F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 --VGGHK----FPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp --ETTEE----EE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred --ECCEe----cccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00000 111234789999999999999988774
No 181
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.09 E-value=1.4e-05 Score=81.14 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=71.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------C-CCeEEeecCCCCC---C-CcceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------C-HGVEHVGGDMFDG---V-PEADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~~---~-~~~D~i~~~~ 255 (354)
.+.+|||+|||+|.++..+++. ...+++++|+ +.+++.+++ . .+++++.+|+++. . ..||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4679999999999999999985 3346999999 888887765 2 5799999998762 2 3599999842
Q ss_pred cccc--------C-ChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 256 VLHD--------W-GDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 256 ~lh~--------~-~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.-.. + .......+++.+.+.|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~-gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP-GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC-CCEEEEE
Confidence 2110 0 012346788899999999 9987663
No 182
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.07 E-value=1.1e-05 Score=71.16 Aligned_cols=99 Identities=24% Similarity=0.257 Sum_probs=74.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---C-CC-cceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---G-VP-EADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~-~~-~~D~i 251 (354)
+++.+||=||+|.|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3679999999999999999988766778999999 888888765 4799999999865 2 33 59999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 252 IIKWVLHDWGDD--ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 252 ~~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.-..--.-+.. -...+++.+++.|+| ||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~-~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP-DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE-EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC-CcEEEEEc
Confidence 884332111111 135889999999999 88777654
No 183
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.06 E-value=2.3e-05 Score=70.32 Aligned_cols=100 Identities=16% Similarity=0.285 Sum_probs=71.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHhhhccc----CCCeEE--eecCCCC---CCCcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRI-RGINFDL-PHVVCVAEK----CHGVEH--VGGDMFD---GVPEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~~v~~--~~~d~~~---~~~~~D~i~~~~~l 257 (354)
.+.+|||+|+|.|..+.++...++.. +++.+|. +.+.+.++. ...... ...++.. ++++.|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 45799999999999888887777743 5789998 777776654 111111 1112221 34457999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
-.++++...++++++.+.+.+ .|+|+|+-.+
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~---~LVlVEpGt~ 143 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP---VLVLVEPGTP 143 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC---cEEEEcCCCh
Confidence 999888888888888777653 8999997543
No 184
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.01 E-value=6.1e-05 Score=65.45 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=67.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCC----CCCC----CcceEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDM----FDGV----PEADAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~----~~~~----~~~D~i~ 252 (354)
....+||+|||+|..+..++...|+.+++++|. +.++..+.+ .+++.++..++ +.+- ..+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345899999999999999999999999999999 655555443 68888885544 3332 2378887
Q ss_pred ecc--cccc-----------CC-----------hHHHHHHHHHHHHhcCCCCceEEE
Q 018565 253 IKW--VLHD-----------WG-----------DDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 253 ~~~--~lh~-----------~~-----------~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
++- +-+. +. .+....++.-+.+.|+| ||.+.+
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~-gg~~~l 283 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP-GGFEQL 283 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc-CCeEEE
Confidence 752 2221 00 11245666777888999 887665
No 185
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.01 E-value=1.3e-05 Score=70.20 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=76.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChH-
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDD- 263 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~- 263 (354)
....++|+|||.|.+..- +|.+..++.|+ ...+..++..+.......|+.+ |.+ .+|..+...++|||...
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 478899999999987532 48888999999 6667777654433567788888 654 49999999999998644
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEee
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
....+++++.+.++| ||..+|.-.
T Consensus 121 RR~~~l~e~~r~lrp-gg~~lvyvw 144 (293)
T KOG1331|consen 121 RRERALEELLRVLRP-GGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHhcC-CCceEEEEe
Confidence 678899999999999 999888654
No 186
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.98 E-value=2.5e-05 Score=76.11 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=70.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhc-cc-----CCCeEEeecCCCC---CCC--cceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVA-EK-----CHGVEHVGGDMFD---GVP--EADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~-----~~~v~~~~~d~~~---~~~--~~D~i~~~~~ 256 (354)
....+||||||.|.++..+++.+|+..++++|. ...+..+ +. -.++.++.+|+.. -++ +.|.|++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 467899999999999999999999999999998 4433332 21 4678888877642 244 3677766432
Q ss_pred cccCChHH-------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 257 LHDWGDDE-------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 257 lh~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
= -|+... ...+|+.+++.|+| ||.+.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~-gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKD-NGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCC-CCEEEEEc
Confidence 2 233221 35789999999999 99998754
No 187
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.96 E-value=0.00012 Score=63.48 Aligned_cols=143 Identities=10% Similarity=0.060 Sum_probs=83.1
Q ss_pred HHHhcCCCcc-CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhh-hcccCCCeE-EeecCCCC-C---C----
Q 018565 178 AIIEGCPEVF-DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVC-VAEKCHGVE-HVGGDMFD-G---V---- 245 (354)
Q Consensus 178 ~~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~v~-~~~~d~~~-~---~---- 245 (354)
.+++.+. . ..+.++||+|||+|.++..+++. +..+++++|. +.++. ..+...++. +...|+.. . +
T Consensus 65 ~~l~~~~--~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 65 EALEEFN--IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHhcC--CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 4444444 2 35679999999999999999986 4457999999 54554 455555654 33345542 1 1
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHH
Q 018565 246 PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKE 325 (354)
Q Consensus 246 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e 325 (354)
+.+|+.+++.. .+|..+.++|+| +-.++++-+-+.-... . ........|-. .+....++
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~-~--~~~~giv~~~~-------~~~~~~~~ 200 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGRE-K--KNKKGVVRDKE-------AIALALHK 200 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHh-h--cCcCCeecCHH-------HHHHHHHH
Confidence 23676666543 357788899998 5444444322211110 0 00000011110 11223567
Q ss_pred HHHHHHHcCCceeEEEEcC
Q 018565 326 WDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~~~~ 344 (354)
+...+.+.||++..+.+.|
T Consensus 201 ~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 201 VIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHcCCCeEeeEEECC
Confidence 7778888999998887764
No 188
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.96 E-value=5e-06 Score=78.26 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=67.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEe---ec-hHHhhhcccCCCeEEeecCCCC---CCCc--ceEEEeccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINF---DL-PHVVCVAEKCHGVEHVGGDMFD---GVPE--ADAAIIKWVLH 258 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~--~D~i~~~~~lh 258 (354)
.....+||||||+|.++..|..+ ++....+ |. +..++.|-+ -.|.-+-+-+.+ |+|+ ||+|.|+.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 45678999999999999999987 4433222 22 223333322 113333233322 6664 99999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
.|...+ ..+|-++-|+|+| ||.+++..+-.
T Consensus 193 ~W~~~~-g~~l~evdRvLRp-GGyfv~S~ppv 222 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRP-GGYFVLSGPPV 222 (506)
T ss_pred cchhcc-cceeehhhhhhcc-CceEEecCCcc
Confidence 998765 4689999999999 99988866543
No 189
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.95 E-value=3.2e-05 Score=71.07 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=52.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--C-CcceEEEec
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--V-PEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~-~~~D~i~~~ 254 (354)
++.+|||+|||+|.++..+++. ..+++++|. +++++.+++ .++++|+.+|+.+ . . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3589999999999999999984 468999999 888887764 3579999999876 2 2 249999885
No 190
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=7.8e-05 Score=63.74 Aligned_cols=101 Identities=22% Similarity=0.360 Sum_probs=75.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCC----CeEEEeec-hHHhhhcc-----cCCCeEE--eecCCCCC---CCc--ce-
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPR----IRGINFDL-PHVVCVAE-----KCHGVEH--VGGDMFDG---VPE--AD- 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a~-----~~~~v~~--~~~d~~~~---~~~--~D- 249 (354)
.+...++|+|.|+..-+..+...+.. .+++.+|+ +.++.... +.+.+++ +++|+..+ .|. --
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888887665 78999998 55554322 2344444 56777652 333 22
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE-Eeee
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII-VEAI 289 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli-~e~~ 289 (354)
.+++.+.|.++++.++..+|.+++.+|+| |-.+++ +|..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p-Gd~~LlGvDl~ 196 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP-GDYFLLGVDLR 196 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC-cceEEEecccc
Confidence 45778999999999999999999999999 888887 4543
No 191
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.91 E-value=4.4e-05 Score=66.27 Aligned_cols=75 Identities=19% Similarity=0.403 Sum_probs=62.2
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP 246 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~ 246 (354)
...++...+ ..+...||+||.|+|.++..++++ +.+++.+++ |.++....+ ....++..||+++ +.|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 345666666 788999999999999999999998 567888888 888877654 5789999999999 888
Q ss_pred cceEEEec
Q 018565 247 EADAAIIK 254 (354)
Q Consensus 247 ~~D~i~~~ 254 (354)
-||.++.+
T Consensus 123 ~fd~cVsN 130 (315)
T KOG0820|consen 123 RFDGCVSN 130 (315)
T ss_pred ccceeecc
Confidence 89988763
No 192
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.88 E-value=0.00016 Score=61.45 Aligned_cols=131 Identities=17% Similarity=0.104 Sum_probs=89.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCC---CCC--cceEEEe
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFD---GVP--EADAAII 253 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~---~~~--~~D~i~~ 253 (354)
+.+.+|||.=.|-|.++++.+++.. ..++-++. |++++.|.- ..+|+++.||..+ +++ +||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 4678999999999999999988732 36666666 888887763 4578999999987 354 3898864
Q ss_pred ccc-cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHH
Q 018565 254 KWV-LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQ 332 (354)
Q Consensus 254 ~~~-lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~ 332 (354)
--. +..-..=...++.+++++.||| ||+++-.-........ | .--.....+.|++
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkr-gGrlFHYvG~Pg~ryr----------------------G-~d~~~gVa~RLr~ 267 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKR-GGRLFHYVGNPGKRYR----------------------G-LDLPKGVAERLRR 267 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCc-CCcEEEEeCCCCcccc----------------------c-CChhHHHHHHHHh
Confidence 110 0000122356899999999999 9999864322111100 0 0125567788999
Q ss_pred cCCceeEEEEc
Q 018565 333 AGFSRYNITSI 343 (354)
Q Consensus 333 aGf~~~~~~~~ 343 (354)
+||..++....
T Consensus 268 vGF~~v~~~~~ 278 (287)
T COG2521 268 VGFEVVKKVRE 278 (287)
T ss_pred cCceeeeeehh
Confidence 99998776543
No 193
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.00097 Score=54.59 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=52.3
Q ss_pred CCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC--CCcceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG--VPEADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~--~~~~D~i~~~~~ 256 (354)
...-++|||||+|..+..+++. .|+..+...|+ |+.++...+ ..++..+..|+.+. ..+.|+++++-.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCC
Confidence 3688999999999999998874 57888999999 888776443 45577788888884 235888877543
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.83 E-value=5.3e-05 Score=63.52 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=67.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc---c---CCCeEEeecCCCC-C-CCcceEEEeccccccCCh
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE---K---CHGVEHVGGDMFD-G-VPEADAAIIKWVLHDWGD 262 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---~~~v~~~~~d~~~-~-~~~~D~i~~~~~lh~~~~ 262 (354)
+++|||+|.|.-++-++=.+|+.+++.+|. ..-+.-.+ . -+++++..+.+.+ . ...||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 33332222 1 5679999998888 3 34599999988653
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEE
Q 018565 263 DECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...++.-+...+++ ||.++..
T Consensus 127 --l~~l~~~~~~~l~~-~G~~l~~ 147 (184)
T PF02527_consen 127 --LDKLLELARPLLKP-GGRLLAY 147 (184)
T ss_dssp --HHHHHHHHGGGEEE-EEEEEEE
T ss_pred --HHHHHHHHHHhcCC-CCEEEEE
Confidence 34778888889999 9998875
No 195
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.83 E-value=9e-05 Score=62.69 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=63.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C---Cc-ceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V---PE-ADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~---~~-~D~i~~ 253 (354)
.+.++||++||+|.++.+++.+... +++.+|. +.++..+++ .++++++.+|.++ . . .. +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4579999999999999999998653 7899998 777666553 3578999999865 1 1 12 677776
Q ss_pred ccccccCChHHHHHHHHHHH--HhcCCCCceEEEEeeee
Q 018565 254 KWVLHDWGDDECIKILKNCK--EAITKDKGKVIIVEAII 290 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~--~~L~p~gG~lli~e~~~ 290 (354)
.-.... .....++..+. .+|++ + .++|+|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~-~-~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILED-T-VLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCC-C-eEEEEEecC
Confidence 443322 22334444443 35666 4 466666543
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00013 Score=63.97 Aligned_cols=92 Identities=14% Similarity=0.254 Sum_probs=66.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc--
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE-- 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-- 247 (354)
.+.+++... ..+...|||||+|.|.++..|+++.. +++++++ +..++..++ .++++++.+|+.+ ++++
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 456666666 56688999999999999999999855 4677776 666666554 5889999999999 7774
Q ss_pred ceEEEeccccccCChHHHHHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKN 271 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~ 271 (354)
.-..+..|.-++.+.+-..+++..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhc
Confidence 223344566666666655555544
No 197
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.78 E-value=0.00032 Score=59.94 Aligned_cols=124 Identities=23% Similarity=0.255 Sum_probs=87.6
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--c-ceEEEeccccccCC
Q 018565 193 LVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--E-ADAAIIKWVLHDWG 261 (354)
Q Consensus 193 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~-~D~i~~~~~lh~~~ 261 (354)
|.||||-.|.+...|+++...-+++..|+ +..++.|++ .++|++..+|-++.++ + .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988778999999 888877764 6899999999888543 3 788888764 3
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEE
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNIT 341 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 341 (354)
-....++|.+....++. ..++++.- . .....++++|.+.||.+.+-.
T Consensus 77 G~lI~~ILe~~~~~~~~-~~~lILqP-----~---------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS-AKRLILQP-----N---------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT---EEEEEE-----S---------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc-CCeEEEeC-----C---------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 55678888888777765 44555411 0 126678899999999999865
Q ss_pred Ec---CCceeEEEEe
Q 018565 342 SI---HAVQSLIEAF 353 (354)
Q Consensus 342 ~~---~~~~~~i~~~ 353 (354)
-+ +.++-+|.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 55 3345566554
No 198
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.76 E-value=5.5e-05 Score=72.68 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=64.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC-----C--CcceEEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG-----V--PEADAAI 252 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~-----~--~~~D~i~ 252 (354)
..+..+|||+|||+|.++..+++.. .+++++|. +++++.+++ ..+++++.+|+.+. . ..||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999874 47999999 888887765 35899999998651 1 1389998
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+.-.=- . ....+++.+.+ ++| ++.+++
T Consensus 368 ~dPPr~--G--~~~~~l~~l~~-l~~-~~ivyv 394 (431)
T TIGR00479 368 LDPPRK--G--CAAEVLRTIIE-LKP-ERIVYV 394 (431)
T ss_pred ECcCCC--C--CCHHHHHHHHh-cCC-CEEEEE
Confidence 732210 0 02355555543 788 765555
No 199
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.76 E-value=0.00096 Score=59.14 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=91.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHh-------hh---c----------------------c-----
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVV-------CV---A----------------------E----- 229 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-------~~---a----------------------~----- 229 (354)
....+||-=|||.|.++-+++++ +..+.+.+. -.|+ .. . +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 45679999999999999999998 555665554 2221 10 0 0
Q ss_pred ---------cCCCeEEeecCCCC--CCC----cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCC
Q 018565 230 ---------KCHGVEHVGGDMFD--GVP----EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD 294 (354)
Q Consensus 230 ---------~~~~v~~~~~d~~~--~~~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~ 294 (354)
...++++..|||.+ +.+ .+|+|+.+..+-- -..+.+.|+.+.++||| ||..+=+.+..-...
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkp-gG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKP-GGYWINFGPLLYHFE 209 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhcc-CCEEEecCCccccCC
Confidence 03578899999998 333 4999988876643 44688999999999999 884443332221111
Q ss_pred CCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEE
Q 018565 295 GVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 342 (354)
. .. ......-+.+.+|+..+.+..||++.+...
T Consensus 210 ~-------------~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 P-------------MS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C-------------CC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 00 000223567899999999999999987544
No 200
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.75 E-value=6.4e-05 Score=67.65 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=61.8
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-C--C-
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-G--V- 245 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~--~- 245 (354)
..++++.+. ..++..+||.+||.|..+..+++.+| +.+++++|. +++++.+++ .++++++.+||.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 456666665 55678999999999999999999986 789999999 999988875 2589999999886 1 1
Q ss_pred ---CcceEEEec
Q 018565 246 ---PEADAAIIK 254 (354)
Q Consensus 246 ---~~~D~i~~~ 254 (354)
+++|.|++-
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 158887763
No 201
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.75 E-value=9.8e-05 Score=69.40 Aligned_cols=89 Identities=6% Similarity=-0.018 Sum_probs=62.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C-C-CcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G-V-PEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~-~-~~~D~i~~~~~l 257 (354)
+..+|||+|||+|.++..++.. ..+++++|. +.+++.++. .+++++..+|+.+ . . .+||+|++.-.=
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3479999999999999999864 468999999 888887764 3479999999865 1 2 348998885321
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
-. ...++++.+. .++| ++.+++
T Consensus 311 ~G----~~~~~l~~l~-~~~p-~~ivyv 332 (374)
T TIGR02085 311 RG----IGKELCDYLS-QMAP-KFILYS 332 (374)
T ss_pred CC----CcHHHHHHHH-hcCC-CeEEEE
Confidence 11 1124445454 3688 665555
No 202
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.68 E-value=2.3e-05 Score=51.26 Aligned_cols=47 Identities=36% Similarity=0.581 Sum_probs=40.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.|++.|...+++.|+.|||+.+|++..-+.|+|..|+..|++++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~dp 52 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVERDP 52 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCeecCc
Confidence 45788888765778999999999999999999999999999998763
No 203
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.63 E-value=6.5e-05 Score=63.51 Aligned_cols=141 Identities=21% Similarity=0.264 Sum_probs=90.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCC--eEEeecCCCC-CCC--cceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHG--VEHVGGDMFD-GVP--EADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~--v~~~~~d~~~-~~~--~~D~i~~~~~lh~ 259 (354)
+....++|||||.|.....+..+. --+.+..|. ..|+..++. .+. ++...+|-.. ++. ++|+|+.+..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH- 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH- 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-
Confidence 355789999999999999998874 235778887 778877765 233 3444566555 554 499999999998
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCccc------CCHHHHHHHHHHc
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKE------RSLKEWDYVLRQA 333 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~------~t~~e~~~ll~~a 333 (354)
|.. +...-+.++..+||| +|.++ ..+. ..+.- .+......+..+-. .+|-. -...++-.+|..|
T Consensus 149 W~N-dLPg~m~~ck~~lKP-Dg~Fi-asml-ggdTL-----yELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 149 WTN-DLPGSMIQCKLALKP-DGLFI-ASML-GGDTL-----YELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hhc-cCchHHHHHHHhcCC-Cccch-hHHh-ccccH-----HHHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhc
Confidence 443 345778899999999 77443 2222 22111 11222223332222 23321 1357888999999
Q ss_pred CCceeEE
Q 018565 334 GFSRYNI 340 (354)
Q Consensus 334 Gf~~~~~ 340 (354)
||....+
T Consensus 219 GF~m~tv 225 (325)
T KOG2940|consen 219 GFSMLTV 225 (325)
T ss_pred Cccccee
Confidence 9987765
No 204
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.54 E-value=0.0005 Score=62.22 Aligned_cols=93 Identities=24% Similarity=0.388 Sum_probs=72.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------------CCCeEEeecCCCCC---C-Ccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------------CHGVEHVGGDMFDG---V-PEA 248 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~~---~-~~~ 248 (354)
++..++|-+|||.|..+.++.+ +| -.+++.+|+ |+|++.++. .+|++++..|.++- . ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4668999999999999999877 67 457899999 999998772 68999999999882 2 249
Q ss_pred eEEEeccccccCChH--------HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 249 DAAIIKWVLHDWGDD--------ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 249 D~i~~~~~lh~~~~~--------~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
|.++.- ++|+ ...++.+-+++.|++ +|.+++..
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e-~Gl~VvQa 407 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAE-TGLMVVQA 407 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCc-CceEEEec
Confidence 998873 3332 235778888999999 99888743
No 205
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0011 Score=56.04 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=75.4
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeecCCCCC-C--------
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG-V-------- 245 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~-~-------- 245 (354)
..++.+.+. .+.++..|+|+|+-.|.++..+++.. ++..++++|+.++-.. ..|.++.+|+..+ .
T Consensus 33 L~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 33 LLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHHHHc
Confidence 345666664 46789999999999999999988865 4456899998555443 4499999999983 1
Q ss_pred C--cceEEEec---cccccCC------hHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 246 P--EADAAIIK---WVLHDWG------DDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 246 ~--~~D~i~~~---~~lh~~~------~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+ ++|+|++- ++--++. ..-+...+.-+...|+| ||.+++-.+
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~-~G~fv~K~f 160 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP-GGSFVAKVF 160 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC-CCeEEEEEE
Confidence 2 25998852 2222222 23456677778889999 998877543
No 206
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.47 E-value=0.0019 Score=58.73 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=75.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCC--C-CCcceEEEeccccccCChH
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD--G-VPEADAAIIKWVLHDWGDD 263 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~--~-~~~~D~i~~~~~lh~~~~~ 263 (354)
+.++.++||+||++|.++..++++ +.+++++|...+.......++|.+..+|-+. + ..++|.+++-.+.. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P- 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P- 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---H-
Confidence 357789999999999999999998 5699999986666666668999999998877 3 23489999877643 2
Q ss_pred HHHHHHHHHHHhcCCCC-ceEEEEeeeeCCCCC
Q 018565 264 ECIKILKNCKEAITKDK-GKVIIVEAIIEEDDG 295 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~g-G~lli~e~~~~~~~~ 295 (354)
.++++-+.++|.. | -+-.|+...++....
T Consensus 283 --~rva~lm~~Wl~~-g~cr~aIfnLKlpmk~r 312 (357)
T PRK11760 283 --ARVAELMAQWLVN-GWCREAIFNLKLPMKKR 312 (357)
T ss_pred --HHHHHHHHHHHhc-CcccEEEEEEEcCCCCC
Confidence 2666777778876 4 346666666665443
No 207
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.46 E-value=0.00023 Score=59.75 Aligned_cols=105 Identities=19% Similarity=0.144 Sum_probs=63.0
Q ss_pred HHHHhcCCCc-cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeecCCCCC---------C
Q 018565 177 RAIIEGCPEV-FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG---------V 245 (354)
Q Consensus 177 ~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~ 245 (354)
.++.+.++.. ..+..++||+||++|.++..++++. +..+++++|+.... ....+.+..+|+.++ .
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhhc
Confidence 3445555511 1245999999999999999999987 67899999984331 123444445555431 1
Q ss_pred ----CcceEEEeccccc---c------CChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 246 ----PEADAAIIKWVLH---D------WGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 246 ----~~~D~i~~~~~lh---~------~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
..+|+|++-.... + ...+.+...|.-+.+.|+| ||.+++-
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~-gG~~v~K 138 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP-GGTFVIK 138 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT-TEEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC-CCEEEEE
Confidence 2589998854221 1 1122344555666677999 9987763
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.44 E-value=0.00044 Score=59.13 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=83.0
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH---hhhccc---CCCeEEeecCCCC-C-CCc-ceEEEecccccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHV---VCVAEK---CHGVEHVGGDMFD-G-VPE-ADAAIIKWVLHD 259 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~~v~~~~~d~~~-~-~~~-~D~i~~~~~lh~ 259 (354)
..+++|||.|.|.-+.-++=.+|+.+++.+|. ..- ++.+.. -++++++.+.+.+ . .+. ||+|+++.+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998899999999997 332 333332 5779999998877 2 235 99999987643
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
...++.-+...+++ ||.++..-... ++. ...+.+......|+...+
T Consensus 147 -----L~~l~e~~~pllk~-~g~~~~~k~~~---------------------------~~~-e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 -----LNVLLELCLPLLKV-GGGFLAYKGLA---------------------------GKD-ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred -----hHHHHHHHHHhccc-CCcchhhhHHh---------------------------hhh-hHHHHHHHHHhhcCcEEE
Confidence 33556666778888 88765311100 000 144556667777888888
Q ss_pred EEEc
Q 018565 340 ITSI 343 (354)
Q Consensus 340 ~~~~ 343 (354)
+.+.
T Consensus 193 ~~~~ 196 (215)
T COG0357 193 VFSL 196 (215)
T ss_pred EEEe
Confidence 7766
No 209
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.43 E-value=0.00042 Score=65.10 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=68.8
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C-CCcceEEEecccccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G-VPEADAAIIKWVLHD 259 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~-~~~~D~i~~~~~lh~ 259 (354)
..+|||++||+|.++..++...+..+++++|+ ++.++.+++ .+++++..+|... . .+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999998877568999999 888877764 3456688888765 2 23599998843 2
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.. ...++..+.+.+++ ||.+.|.
T Consensus 135 -Gs--~~~~l~~al~~~~~-~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKR-GGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcC-CCEEEEE
Confidence 11 23677887778899 9999887
No 210
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.42 E-value=0.00026 Score=58.84 Aligned_cols=99 Identities=13% Similarity=0.220 Sum_probs=65.4
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------------CCCeEEeecCCCCCCCc-ceEEEec
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------------CHGVEHVGGDMFDGVPE-ADAAIIK 254 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~~~~~-~D~i~~~ 254 (354)
.--+.|||||.|.++..|...+|+.-+.|.++ -.+.+-.++ ..++.+...+.+.-.|+ |.--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999999999988 444432221 35567776666653343 2222233
Q ss_pred cccccCChHH-----------HHHHHHHHHHhcCCCCceEEEEeee
Q 018565 255 WVLHDWGDDE-----------CIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 255 ~~lh~~~~~~-----------~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
-.++.+||+. ...++.+..-+|++ ||.++.+..+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~-gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE-GGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc-CceEEEEeeH
Confidence 3333334332 23566777778998 9999887644
No 211
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.41 E-value=0.00063 Score=60.75 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=66.9
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc--
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE-- 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-- 247 (354)
.+.+++.++ ..+...|||||+|.|.++..|++.. -++++++. +..++..++ .++++++.+|+.+ +.+.
T Consensus 19 ~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 455666666 5678999999999999999999986 67888888 777766654 6899999999998 5443
Q ss_pred --ceEEEeccccccCChHHHHHHHHHHHHhcCC
Q 018565 248 --ADAAIIKWVLHDWGDDECIKILKNCKEAITK 278 (354)
Q Consensus 248 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 278 (354)
-.+.+..+.-++.+. .++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is~----~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNISS----PILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGHH----HHHHHHHHHGGG
T ss_pred cCCceEEEEEecccchH----HHHHHHhhcccc
Confidence 344555555554443 455555554333
No 212
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=97.39 E-value=0.00012 Score=49.56 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=47.2
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.+|..-.++.|+..|... +|.|+.+||+.+|+++..+.+.|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~~-~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN-GPMTVSELAEELGISQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC-STBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEec
Confidence 4566667888899999432 899999999999999999999999999999998876
No 213
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.38 E-value=9.9e-05 Score=61.44 Aligned_cols=148 Identities=17% Similarity=0.217 Sum_probs=83.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeec-CCCCCCCcceEEEeccccccCChHHH
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGG-DMFDGVPEADAAIIKWVLHDWGDDEC 265 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~-d~~~~~~~~D~i~~~~~lh~~~~~~~ 265 (354)
..+.++||+|+|.|..+..++..+.+ +...++ ..|..+.+. .+..+... +..+.--.+|+|.|.++|.--.+ -
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~--p 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFD--P 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcC--h
Confidence 45689999999999999888765543 233334 455555543 22222211 11111114899999999854333 3
Q ss_pred HHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCC--HHHHHHHHHHcCCceeEEEEc
Q 018565 266 IKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERS--LKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 266 ~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t--~~e~~~ll~~aGf~~~~~~~~ 343 (354)
.++|+.++.+|+|+.|++++. .++|-...|+....-... ..-+.+- .+|+.+. ...+.++|+++||.+.....+
T Consensus 186 ~kLL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~~-rPdn~Le--~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLPL-RPDNLLE--NNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCcC-CchHHHH--hcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 589999999999866777663 233211100000000000 0001111 3444332 345678999999999887776
Q ss_pred C
Q 018565 344 H 344 (354)
Q Consensus 344 ~ 344 (354)
|
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 5
No 214
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.36 E-value=0.00031 Score=59.69 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=64.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC--CCcceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG--VPEADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~--~~~~D~i~~~~~l 257 (354)
.++..|+|.-||.|.++..+++..+..+++..|+ |+.++.+++ ..++....+|..+- ...+|-|++...-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 4678999999999999999999777888999999 888776654 67899999998872 2349988885532
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceE
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKV 283 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~l 283 (354)
.+..+|..+.+.+++ ||.+
T Consensus 180 ------~~~~fl~~~~~~~~~-~g~i 198 (200)
T PF02475_consen 180 ------SSLEFLDAALSLLKE-GGII 198 (200)
T ss_dssp ------SGGGGHHHHHHHEEE-EEEE
T ss_pred ------HHHHHHHHHHHHhcC-CcEE
Confidence 234678888899998 7654
No 215
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.34 E-value=0.00076 Score=55.41 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=71.2
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCCcceEEEeccccccCCh
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVPEADAAIIKWVLHDWGD 262 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~~D~i~~~~~lh~~~~ 262 (354)
..+-|+|.|+|.++...+++ .-+++.++. |...+.+++ ..+++++.+|..+ ++..+|+|+|-..=-.+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 67899999999998776665 447888888 877777765 5789999999999 8888999988543222223
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 263 DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.-..+++.+.+-|+- +++++=.+
T Consensus 112 E~qVpV~n~vleFLr~-d~tiiPq~ 135 (252)
T COG4076 112 EKQVPVINAVLEFLRY-DPTIIPQE 135 (252)
T ss_pred ccccHHHHHHHHHhhc-CCccccHH
Confidence 3445778888888887 78776544
No 216
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.32 E-value=0.0022 Score=55.76 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=67.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCC--cceEEEeccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVP--EADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~--~~D~i~~~~~lh 258 (354)
.+.+.+|+|||||.--++.-.....|+.+++++|+ ...++.... ..+.++...|..+..| .+|+.++.-++|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 34689999999999999988888888999999999 777666554 5678888889999544 489999999998
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
-+........+ ++.+.++. -.++|+-+...
T Consensus 183 ~le~q~~g~g~-~ll~~~~~--~~~vVSfPtrS 212 (251)
T PF07091_consen 183 CLERQRRGAGL-ELLDALRS--PHVVVSFPTRS 212 (251)
T ss_dssp HHHHHSTTHHH-HHHHHSCE--SEEEEEEES--
T ss_pred HHHHHhcchHH-HHHHHhCC--CeEEEeccccc
Confidence 76655433322 33344442 36666555443
No 217
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.0034 Score=55.87 Aligned_cols=151 Identities=13% Similarity=0.152 Sum_probs=95.2
Q ss_pred HHHHHhcCCCcc--CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec------hHHhh---------------------
Q 018565 176 MRAIIEGCPEVF--DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL------PHVVC--------------------- 226 (354)
Q Consensus 176 ~~~~~~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~--------------------- 226 (354)
.+.+...+++.. +...+||-=|||.|.++..|+...+.+++--+.. .-++.
T Consensus 135 i~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~ 214 (369)
T KOG2798|consen 135 IEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSL 214 (369)
T ss_pred HHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccc
Confidence 344555555211 2356899999999999999999887766521110 00000
Q ss_pred ----hccc--------------CCCeEEeecCCCC--CCC----cceEEEeccccccCChHHHHHHHHHHHHhcCCCCce
Q 018565 227 ----VAEK--------------CHGVEHVGGDMFD--GVP----EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGK 282 (354)
Q Consensus 227 ----~a~~--------------~~~v~~~~~d~~~--~~~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~ 282 (354)
+.+. ....+..+|||.+ +.+ .||+|+.++.+-- ...+.+.|..+.+.||| ||.
T Consensus 215 ~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~-GGv 291 (369)
T KOG2798|consen 215 SRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKP-GGV 291 (369)
T ss_pred ccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccC-CcE
Confidence 0000 2445557799987 322 3999988866642 45688999999999999 887
Q ss_pred EEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 283 VIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 283 lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
.+=+.+..-.... .. . ... ..+-+.+.+++..+.+.-||++.+-..+
T Consensus 292 WiNlGPLlYHF~d-~~------g------~~~-~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 292 WINLGPLLYHFED-TH------G------VEN-EMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred EEeccceeeeccC-CC------C------Ccc-cccccccHHHHHHHHHhcCcEEEEeeee
Confidence 6655544322111 00 0 001 2345778999999999999999876544
No 218
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=97.27 E-value=0.00036 Score=51.36 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=48.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
+.|++.|...+++.|+.+||+.+|++...+.|.|+.|...|+++.... ++.|++++.
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~---~~~y~l~~~ 64 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQ---NGRYRLGPK 64 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCC---CCceeecHH
Confidence 557777876436899999999999999999999999999999998742 377988764
No 219
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=97.26 E-value=0.00059 Score=47.28 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=48.9
Q ss_pred HHHcChhhhhhhCCC-CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 37 AVELGIAEAVEEKGS-PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 37 a~~lglf~~L~~~~~-~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
..+-.|+..|...++ ++|+.+||+.+|++...+.++|..|...|+++..+.. ++.|+++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~~--~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGGT--PPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC--CCceEeec
Confidence 456678888887643 3999999999999999999999999999999987521 36787764
No 220
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.26 E-value=0.0033 Score=52.12 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=85.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeechHHhh-----------hccc--CCCeEEeecCCCC-CCC-cceE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDLPHVVC-----------VAEK--CHGVEHVGGDMFD-GVP-EADA 250 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~-----------~a~~--~~~v~~~~~d~~~-~~~-~~D~ 250 (354)
+++..+|+|+=.|.|.+..-+... .|.-.++.+-..+... .+++ ..+++....+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 788999999999999999888764 2333333322222211 1111 3445555444444 222 3677
Q ss_pred EEecccccc-----CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHH
Q 018565 251 AIIKWVLHD-----WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKE 325 (354)
Q Consensus 251 i~~~~~lh~-----~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e 325 (354)
++....-|. +....+.++.+.++++||| ||.++|.|+....... .. ... .-..++..-
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP-GGv~~V~dH~a~pG~~-~~---dt~------------~~~ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP-GGVYLVEDHRADPGSG-LS---DTI------------TLHRIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC-CcEEEEEeccccCCCC-hh---hhh------------hhcccChHH
Confidence 666433332 2345678999999999999 9999999887655433 10 010 012235667
Q ss_pred HHHHHHHcCCceeEEEEc
Q 018565 326 WDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~~~ 343 (354)
..+-.+++||+..--..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 778888999988755443
No 221
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.25 E-value=0.0017 Score=57.75 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=57.2
Q ss_pred CCceEEEecCCccHH-HHHHHHH-CCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCC---CCCcceEEEec
Q 018565 189 GIETLVDIGGNDGTT-LRTLTKA-FPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFD---GVPEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~-~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~---~~~~~D~i~~~ 254 (354)
.+.+|+=||||.=-+ ++.++++ .++..++++|+ ++..+.+++ ..+++|+.+|..+ +..+||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 356999999997655 4555554 46788999999 877777654 6899999999876 34579999988
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
..... +.+...++|.++.+.|+| |..|++
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~-ga~l~~ 228 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAP-GARLVV 228 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T-TSEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCC-CcEEEE
Confidence 77653 344567999999999999 877765
No 222
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.24 E-value=0.0023 Score=53.89 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=74.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-----CCCeEEeecCCCC---CCC--cceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-----CHGVEHVGGDMFD---GVP--EADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~d~~~---~~~--~~D~i~~~~~l 257 (354)
.++++||.||=|-|.....+.++-|..+.++---|.+..+.+. .++|....|-..+ ..+ .||-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5789999999999999999988888877776666999988875 5778777774444 344 38888764432
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
.+ -++...+.+.+.++||| +|.+=.....
T Consensus 180 e~--yEdl~~~hqh~~rLLkP-~gv~SyfNg~ 208 (271)
T KOG1709|consen 180 EL--YEDLRHFHQHVVRLLKP-EGVFSYFNGL 208 (271)
T ss_pred hH--HHHHHHHHHHHhhhcCC-CceEEEecCc
Confidence 22 35677889999999999 9877665543
No 223
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.21 E-value=0.001 Score=53.51 Aligned_cols=84 Identities=24% Similarity=0.296 Sum_probs=59.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCC-C-CCcceE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA----FPRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFD-G-VPEADA 250 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~-~~~~D~ 250 (354)
..+..+|+|+|||.|.++..++.. .++.+++++|. ++..+.+.. ..++++..+++.+ + ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 457789999999999999999882 27899999998 666665543 3566677766655 2 334778
Q ss_pred EEeccccccCChHHHHHHHHHHHH
Q 018565 251 AIIKWVLHDWGDDECIKILKNCKE 274 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L~~~~~ 274 (354)
++.-+..-.+++ .+|+...+
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEEeecccchHH----HHHHHHHH
Confidence 887777766554 44555544
No 224
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.17 E-value=0.0041 Score=59.91 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=71.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc------CCCeEEeecCCCC---CCC-cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD---GVP-EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~-~~D~i~~~ 254 (354)
..++.+|||+++|.|.-+..++....+ -.++..|+ +.-+..+++ ..++.+...|... ..+ .||.|++-
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 356789999999999999999987643 47888998 555554443 3567777777654 233 38999852
Q ss_pred cc------c-------ccCChHHH-------HHHHHHHHHhcCCCCceEEEEee
Q 018565 255 WV------L-------HDWGDDEC-------IKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 255 ~~------l-------h~~~~~~~-------~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
-. + ..|+.+.+ .++|+++.+.||| ||.|+-+.-
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp-GG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP-GGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEECC
Confidence 21 1 22333332 6899999999999 998866543
No 225
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=97.16 E-value=0.00052 Score=52.86 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCce---EecCc
Q 018565 28 FTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMA---FQQTP 98 (354)
Q Consensus 28 ~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---y~~t~ 98 (354)
.-.+++|.-..++.|+..|... ++.++.|||+.+++++..+++.|+.|...|++..+.. |+ |++++
T Consensus 7 ~~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~----Gr~~~Y~l~~ 75 (117)
T PRK10141 7 LQLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQ----GKWVHYRLSP 75 (117)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE----cCEEEEEECc
Confidence 3456677777899999999753 6899999999999999999999999999999987763 44 76654
No 226
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=97.15 E-value=0.00034 Score=44.60 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=39.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceee
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKE 84 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~ 84 (354)
++.|...|.+ +|.++.|||+.+|+++..+++.|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGLSQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccccchHHHHHHHHHHHCcCeeC
Confidence 5677888887 8999999999999999999999999999999874
No 227
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.13 E-value=0.023 Score=48.55 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=90.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-h----HHhhhcccCCCeEEeecCCCCC------CCcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-P----HVVCVAEKCHGVEHVGGDMFDG------VPEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~------~~~~D~i~~~ 254 (354)
+.++.+||-+|..+|.....+..- .|.-.+.+++. | +.+..+++..+|-.+-.|...| .+..|+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 678899999999999999999885 34667888887 5 4455566678898888998885 2347888774
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
-. + ++++.-++.++..-||+ ||.++++=-...-+.. .+| .. ...+=.+.|++.|
T Consensus 151 Va-Q---p~Qa~I~~~Na~~fLk~-gG~~~i~iKa~siD~t-~~p---~~-----------------vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA-Q---PDQARIAALNARHFLKP-GGHLIISIKARSIDST-ADP---EE-----------------VFAEEVKKLKEEG 204 (229)
T ss_dssp -S-S---TTHHHHHHHHHHHHEEE-EEEEEEEEEHHHH-SS-SSH---HH-----------------HHHHHHHHHHCTT
T ss_pred CC-C---hHHHHHHHHHHHhhccC-CcEEEEEEecCcccCc-CCH---HH-----------------HHHHHHHHHHHcC
Confidence 32 2 35677888999999999 9999886433222211 100 00 0122245677889
Q ss_pred CceeEEEEcCC---ceeEEEE
Q 018565 335 FSRYNITSIHA---VQSLIEA 352 (354)
Q Consensus 335 f~~~~~~~~~~---~~~~i~~ 352 (354)
|++.+...+.. .+.++.+
T Consensus 205 ~~~~e~i~LePy~~dH~~vv~ 225 (229)
T PF01269_consen 205 FKPLEQITLEPYERDHAMVVG 225 (229)
T ss_dssp CEEEEEEE-TTTSTTEEEEEE
T ss_pred CChheEeccCCCCCCcEEEEE
Confidence 99999988833 3555554
No 228
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.12 E-value=0.0046 Score=49.78 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=63.9
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc-C--CC---eEEeecCCCC---CCC---cceEEEeccccc
Q 018565 193 LVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK-C--HG---VEHVGGDMFD---GVP---EADAAIIKWVLH 258 (354)
Q Consensus 193 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-~--~~---v~~~~~d~~~---~~~---~~D~i~~~~~lh 258 (354)
++|+|||+|... .+....+. ..++++|. +.++...+. . .. +.+..+|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999977 33343333 47788888 655555332 1 11 5777777654 333 48999 544444
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
++.. ....++++.+.++| +|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~-~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP-GGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC-CcEEEEEeccCCC
Confidence 4333 56889999999999 9999888766443
No 229
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.046 Score=45.85 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=98.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-h----HHhhhcccCCCeEEeecCCCCCC------CcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-P----HVVCVAEKCHGVEHVGGDMFDGV------PEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~------~~~D~i~~~~ 255 (354)
+.++.+||=+|..+|.....+..-.+.-.+.+++. | +.+..+++..++-.+-+|...|. +..|+|+.--
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 77899999999999999999999887666777776 4 34555666788888888988863 3578887632
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
. .++++.-+..|+..-||+ ||.++++=-...-+.. ..| .. -..+-.+-|++.||
T Consensus 154 A----Qp~Qa~I~~~Na~~FLk~-~G~~~i~iKArSIdvT-~dp---~~-----------------vf~~ev~kL~~~~f 207 (231)
T COG1889 154 A----QPNQAEILADNAEFFLKK-GGYVVIAIKARSIDVT-ADP---EE-----------------VFKDEVEKLEEGGF 207 (231)
T ss_pred C----CchHHHHHHHHHHHhccc-CCeEEEEEEeeccccc-CCH---HH-----------------HHHHHHHHHHhcCc
Confidence 1 145677788889999999 9988886555443333 110 00 02222355778899
Q ss_pred ceeEEEEcC---CceeEEEEe
Q 018565 336 SRYNITSIH---AVQSLIEAF 353 (354)
Q Consensus 336 ~~~~~~~~~---~~~~~i~~~ 353 (354)
++.++..+. ..+.+|.+.
T Consensus 208 ~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 208 EILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred eeeEEeccCCcccceEEEEEe
Confidence 999998873 347776654
No 230
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.11 E-value=0.0073 Score=53.77 Aligned_cols=145 Identities=14% Similarity=0.026 Sum_probs=94.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------CCCeEEeecCCCCCC------Cc-----c
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------CHGVEHVGGDMFDGV------PE-----A 248 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~------~~-----~ 248 (354)
+...||.+|||-=.....+.. .+++++.-+|.|++++.-++ ..+.+++..|+..++ .+ .
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 456899999998877766632 23578888888988774332 468899999987421 12 3
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchh-hhhhhccHHh--hcccCCcccCCHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFK-SVRLMLDMVM--MAHTNKGKERSLKE 325 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~g~~~t~~e 325 (354)
-++++-.++.+++.+++.++|+.+.+...| |+.|+ .|.+.+.... . .. .......... ... .-....+.++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~-gs~l~-~d~~~~~~~~-~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAP-GSRLA-FDYVRPLDGE-W--RAGMRAPVYHAARGVDGS-GLVFGIDRAD 233 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCC-CcEEE-EEeccccchh-H--HHHHHHHHHHhhhccccc-ccccCCChhh
Confidence 478888999999999999999999998888 66555 5554431111 0 00 0000000000 000 0011246899
Q ss_pred HHHHHHHcCCceeEE
Q 018565 326 WDYVLRQAGFSRYNI 340 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~ 340 (354)
..++|++.||+..+.
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998775
No 231
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.09 E-value=0.0041 Score=52.12 Aligned_cols=92 Identities=17% Similarity=0.131 Sum_probs=62.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCe---------EEEeec-hHHhhhccc-------CCCeEEeecCCCC-CC-C-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIR---------GINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GV-P- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~-~- 246 (354)
..+...|+|-=||+|.++++.+...++.. +++.|+ ++++..++. ...+.+...|+.+ +. .
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 45678999999999999999887766666 899999 888877764 5678999999998 63 2
Q ss_pred cceEEEeccccccC-Ch-----HHHHHHHHHHHHhcCC
Q 018565 247 EADAAIIKWVLHDW-GD-----DECIKILKNCKEAITK 278 (354)
Q Consensus 247 ~~D~i~~~~~lh~~-~~-----~~~~~~L~~~~~~L~p 278 (354)
.+|+|++.-..-.- .. +-..++++.+.+.+++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 48999986554321 21 1234567778888886
No 232
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0012 Score=51.98 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=51.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCC--c-ceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVP--E-ADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~--~-~D~i~~~~~lh 258 (354)
.+.+++|+|||.|-++....- +.+-.++|+|+ |+.++.+.. .-.+++...|+.++.+ . ||..+++..+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 578999999999999843322 23346899999 999988765 4567888888888432 3 89988876653
No 233
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.05 E-value=0.0006 Score=63.58 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=42.9
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD 243 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 243 (354)
.++||++||+|.++..+++... +++++|. +++++.+++ ..++++..+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999998888763 8999999 888888775 3478999998865
No 234
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=97.03 E-value=0.00069 Score=59.84 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=49.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|...+.++++.|||+++|+++.-+.|+|..|+..|+++.++. +++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~---~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPE---DGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEeehHHH
Confidence 567788876334467999999999999999999999999999999985 3789999753
No 235
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.01 E-value=0.0006 Score=55.73 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=46.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---CC--c-ceEEEecc
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---VP--E-ADAAIIKW 255 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---~~--~-~D~i~~~~ 255 (354)
.|+|+-||.|..++.+++.+. +++++|+ |..++.++. .++|+++.+|+++. .. . +|+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 699999999999999999854 6889998 888877764 57999999999882 22 2 79998753
No 236
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.00053 Score=61.71 Aligned_cols=99 Identities=18% Similarity=0.344 Sum_probs=62.2
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHH---hhhccc---CCCeEEeecCCCC---CCCcceEEEeccccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIR-GINFDL-PHV---VCVAEK---CHGVEHVGGDMFD---GVPEADAAIIKWVLH 258 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~---~~~a~~---~~~v~~~~~d~~~---~~~~~D~i~~~~~lh 258 (354)
..+|||||.|.|.-+.++-.-+|.++ +++++. |.. .....+ .....-...|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 46799999999998888888888875 556665 322 221111 1122222334333 455556555544444
Q ss_pred cC----ChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 259 DW----GDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 259 ~~----~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
.+ ........++++...+.| ||.|+|+|.-
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~-gg~lVivErG 227 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP-GGHLVIVERG 227 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC-CCeEEEEeCC
Confidence 33 334455589999999999 9999999963
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.96 E-value=0.0059 Score=50.77 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=67.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCCcceEEEeccccccCC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVPEADAAIIKWVLHDWG 261 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~ 261 (354)
-.+++|||+|.|+|.-++..++... ..++..|+ |.....++- ...|.+...|..-+.+.+|+++...++++-
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~- 155 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH- 155 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc-
Confidence 3578999999999999888777532 23444454 544443332 566788888877755569999999999874
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
....+++.-..+.... |-.++|.++.++.
T Consensus 156 -~~a~~l~~~~~~l~~~-g~~vlvgdp~R~~ 184 (218)
T COG3897 156 -TEADRLIPWKDRLAEA-GAAVLVGDPGRAY 184 (218)
T ss_pred -hHHHHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence 4455667744444444 6677776665544
No 238
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.94 E-value=0.0036 Score=57.37 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=66.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-------CCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCC-C-CC--
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-------FPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFD-G-VP-- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~-~~-- 246 (354)
..+..+|+|-.||+|.++..+.+. .+..++.|+|+ +.++..++. .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456679999999999999988774 47788999999 666655432 3345678888877 2 32
Q ss_pred -cceEEEeccccccC--Ch-----------------HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 -EADAAIIKWVLHDW--GD-----------------DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 -~~D~i~~~~~lh~~--~~-----------------~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.||+|+++-.+-.. .+ ..-..++.++.+.|++ ||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~-~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP-GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc-ccceeEEe
Confidence 49999886433221 11 1113578889999999 99877643
No 239
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0064 Score=53.13 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=70.9
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhcc----c---CCCeEEeecCCCC-CC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAE----K---CHGVEHVGGDMFD-GV 245 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~----~---~~~v~~~~~d~~~-~~ 245 (354)
..-++..++ ..++.+||+-|.|+|.++-++++. .|.-+..-+|. ..-.+.+. + .+++++...|+.. .+
T Consensus 94 ia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 345556666 789999999999999999999986 47778888887 33333333 2 7899999999988 33
Q ss_pred C----cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 246 P----EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 246 ~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+ .+|.|++ ++|.+. ..+-.++++||..||++.-..+
T Consensus 172 ~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 172 LIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred cccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccH
Confidence 3 3899888 333332 3344555567762445554443
No 240
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=96.90 E-value=0.00098 Score=59.03 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=48.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.+.....|.|+.|||+.+|+++.-+.|+|..|+..|++++++ ++|++++..
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~~-----~~Y~lG~~~ 67 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSDG-----RLFWLTPRV 67 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-----CEEEecHHH
Confidence 56777776544789999999999999999999999999999999754 889998753
No 241
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.0072 Score=49.81 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=61.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeec-CCCCC---------CCc--ceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGG-DMFDG---------VPE--ADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-d~~~~---------~~~--~D~i~~ 253 (354)
+++..+|||+||..|.++.-..++. |+--+.++|+.+... ...+.+..+ |+.+| .|+ .|+|+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 5688999999999999999888775 999999999844322 233445544 66553 233 677765
Q ss_pred cccc---------ccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 254 KWVL---------HDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 254 ~~~l---------h~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
-..- |....+-|..+|.-....++| +|.+++
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p-~g~fvc 182 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIP-NGSFVC 182 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC-CcEEEE
Confidence 3221 222233455566566667788 887766
No 242
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.87 E-value=0.00093 Score=62.54 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=42.5
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD 243 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 243 (354)
.++||++||+|.++..+++... +++++|. +.+++.+++ .+++++..+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999998888753 7999999 888877764 3478999998765
No 243
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.03 Score=48.23 Aligned_cols=151 Identities=12% Similarity=0.056 Sum_probs=92.4
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHhhhcccCCCeEEeec-CCCCC----CC-cc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL--PHVVCVAEKCHGVEHVGG-DMFDG----VP-EA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~-d~~~~----~~-~~ 248 (354)
...++.+. ....+..+||||..||.++..++++. ...+.++|. .+.....+..+|+..... |+..- +. ..
T Consensus 68 ~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 68 EKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 34555565 13467899999999999999999873 346788887 455556666777777654 55541 22 36
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|++++--. --....+|-.+...++| ++.++.. +.|.... . .......-.......+..-..++.+
T Consensus 146 d~~v~DvS-----FISL~~iLp~l~~l~~~-~~~~v~L--vKPQFEa-g------r~~v~kkGvv~d~~~~~~v~~~i~~ 210 (245)
T COG1189 146 DLIVIDVS-----FISLKLILPALLLLLKD-GGDLVLL--VKPQFEA-G------REQVGKKGVVRDPKLHAEVLSKIEN 210 (245)
T ss_pred CeEEEEee-----hhhHHHHHHHHHHhcCC-CceEEEE--ecchhhh-h------hhhcCcCceecCcchHHHHHHHHHH
Confidence 77776332 22356889999999998 7765542 2221111 0 0000000000001123334678889
Q ss_pred HHHHcCCceeEEEEcC
Q 018565 329 VLRQAGFSRYNITSIH 344 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~ 344 (354)
++++.||++..+...|
T Consensus 211 ~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 211 FAKELGFQVKGLIKSP 226 (245)
T ss_pred HHhhcCcEEeeeEccC
Confidence 9999999999887763
No 244
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.84 E-value=0.0014 Score=60.91 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=77.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCc--ceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPE--ADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~--~D~i~~~~~ 256 (354)
.+...++|+|||.|.....+.. +.....+++|. +.-+.+... .....++.+|+.+ ++++ ||.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 3555899999999999887765 45677888887 444443332 4555558889988 6664 999988888
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCC
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD 294 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~ 294 (354)
..|.++. ..++++++++++| ||..++.|.+.....
T Consensus 188 ~~~~~~~--~~~y~Ei~rv~kp-GG~~i~~e~i~~~~~ 222 (364)
T KOG1269|consen 188 VCHAPDL--EKVYAEIYRVLKP-GGLFIVKEWIKTAKL 222 (364)
T ss_pred cccCCcH--HHHHHHHhcccCC-CceEEeHHHHHhhhc
Confidence 8876654 5889999999999 999998887765443
No 245
>PRK11569 transcriptional repressor IclR; Provisional
Probab=96.82 E-value=0.0014 Score=59.01 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=48.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|.+..++.|+.|||+.+|++..-+.|+|..|+..|+++.++. .++|++.+..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~---~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGE---LGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCeEecCHHH
Confidence 456677765447899999999999999999999999999999998753 4889998753
No 246
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=96.82 E-value=0.0014 Score=58.79 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=48.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|...+++.|+.|||+.+|++...+.|+|..|+..|+|..++. .++|+++...
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~~---~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQ---LGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCeEEecHHH
Confidence 456777765446899999999999999999999999999999988753 4789998753
No 247
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.78 E-value=0.0085 Score=54.30 Aligned_cols=147 Identities=16% Similarity=0.071 Sum_probs=93.3
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------CCCeEEeecCCCC-CCC------cce----
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------CHGVEHVGGDMFD-GVP------EAD---- 249 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~-~~~------~~D---- 249 (354)
...||-+|||-=.-+-.+-.. +++++.-+|+|++++.-++ ..++++++.|+.+ +++ +||
T Consensus 93 ~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred ccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 689999999965544333221 2577888888999886443 2389999999995 543 243
Q ss_pred -EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcc-hhhhhhhc--cHHhhcccCCcccCCHHH
Q 018565 250 -AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNK-FKSVRLML--DMVMMAHTNKGKERSLKE 325 (354)
Q Consensus 250 -~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~-~~~~~~~~--~l~~~~~~~~g~~~t~~e 325 (354)
++++-.++-+++.+.+.++|.++....+| |..++........... ... ........ ++... . ..-......+
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~-gS~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-e-~~~~~~~~~e 247 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAP-GSRVAFDYSLPGSLRD-RLRRPAARKTMRGEDLDRG-E-LVYFGDDPAE 247 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCC-CceEEEeccccHHHHh-cccchhhhhhccccccccc-c-ceeccCCHHH
Confidence 78889999999999999999999999998 7666554321111111 000 00000000 00000 0 0112235789
Q ss_pred HHHHHHHcCCceeEEE
Q 018565 326 WDYVLRQAGFSRYNIT 341 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~ 341 (354)
+..++.+.||......
T Consensus 248 ~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 248 IETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHhcCEEEEecC
Confidence 9999999999888763
No 248
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.76 E-value=0.0015 Score=45.08 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=41.2
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCccc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLS 100 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~ 100 (354)
-|+..|....++.|..+||+.++++...+.+.++-|...|+|++.... |+ ...|++|+.|
T Consensus 7 ~vL~~l~~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 7 QVLRALAHSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHT--TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 344455411379999999999999999999999999999999777532 11 2358888754
No 249
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.73 E-value=0.0066 Score=59.91 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=47.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCC--------CeEEEeec-hHHhhhccc------CCCeEEeecCCCCC--------C
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPR--------IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG--------V 245 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~--------~ 245 (354)
...+|||.+||+|.++..+++..+. ..++++|+ +..+..++. ...+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4579999999999999999876642 46789998 777666543 12455666665531 2
Q ss_pred CcceEEEecc
Q 018565 246 PEADAAIIKW 255 (354)
Q Consensus 246 ~~~D~i~~~~ 255 (354)
+.||+|+.+=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 3599999863
No 250
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.72 E-value=0.064 Score=45.69 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=86.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC---cceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP---EADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~---~~D~i~~~~~l 257 (354)
...++.||||-.|.+...+++.++..+++..|+ +..+..|.+ .++++...+|-+.++. ..|++++..+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 344599999999999999999999999999998 666665543 7899999999988543 3888877664
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
.-.....+|.+-.+-|+. --++++ .++. ...+++++|.+.+|.+
T Consensus 95 ---GG~lI~~ILee~~~~l~~-~~rlIL-----QPn~---------------------------~~~~LR~~L~~~~~~I 138 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKG-VERLIL-----QPNI---------------------------HTYELREWLSANSYEI 138 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcC-cceEEE-----CCCC---------------------------CHHHHHHHHHhCCcee
Confidence 345677888887777763 224443 1111 1556677888888888
Q ss_pred eEEEEcCC
Q 018565 338 YNITSIHA 345 (354)
Q Consensus 338 ~~~~~~~~ 345 (354)
+.-.-+..
T Consensus 139 ~~E~ileE 146 (226)
T COG2384 139 KAETILEE 146 (226)
T ss_pred eeeeeecc
Confidence 76555543
No 251
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=96.68 E-value=0.0027 Score=40.33 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=37.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
-+.|..+||+.+|+++..+.+.|+.|...|+++... +.|.++
T Consensus 7 ~~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~~-----~~~~i~ 48 (48)
T smart00419 7 LPLTRQEIAELLGLTRETVSRTLKRLEKEGLISREG-----GRIVIL 48 (48)
T ss_pred eccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC-----CEEEEC
Confidence 478999999999999999999999999999998776 677653
No 252
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.00069 Score=54.29 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=65.6
Q ss_pred CceEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCCC-----CCcceEEEe
Q 018565 190 IETLVDIGGNDG-TTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFDG-----VPEADAAII 253 (354)
Q Consensus 190 ~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~-----~~~~D~i~~ 253 (354)
+.+||++|+|-- ..+..++...|...+...|- .+.++..++ ..++..+..+.... ...||.|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 478999999954 44555556678888888886 555554433 34444444444331 224999999
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..++.. ++....+.+.+...|+| .|+-++..
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p-~g~Al~fs 140 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRP-SGRALLFS 140 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCc-ccceeEec
Confidence 999875 77778999999999999 88766543
No 253
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=96.67 E-value=0.0016 Score=46.28 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=42.1
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchh
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRL 103 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l 103 (354)
|+..+.. ++.+..+|+..++++...+.+.|+.|...|+++..+ +.|.+|+.|+.+
T Consensus 11 IL~~l~~--~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI~~~~-----~~Y~lTekG~~~ 65 (77)
T PF14947_consen 11 ILKILSK--GGAKKTEIMYKANLNYSTLKKYLKELEEKGLIKKKD-----GKYRLTEKGKEF 65 (77)
T ss_dssp HHHHH-T--T-B-HHHHHTTST--HHHHHHHHHHHHHTTSEEEET-----TEEEE-HHHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCeeCCC-----CEEEECccHHHH
Confidence 4455544 799999999999999999999999999999997755 899999998633
No 254
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.64 E-value=0.00095 Score=46.26 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=41.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|..|+..|... ++.|+.+||+.+|++...+.+.|+-|...|+++..+
T Consensus 9 ~E~~vy~~Ll~~-~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 9 NEAKVYLALLKN-GPATAEEIAEELGISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHHH-CHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 455666666543 899999999999999999999999999999999886
No 255
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=96.62 E-value=0.0022 Score=41.00 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=38.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCcee
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFK 83 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~ 83 (354)
.+..|+..|.+. +++|..+||+.+|++...+.+.|+-|...|+++
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 356788888875 679999999999999999999999999999985
No 256
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=96.62 E-value=0.0022 Score=57.06 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=48.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|... ++.|+.|||+.+|+++.-+.|+|+.|+..|++++... .++|++++..
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~---~~~Y~lG~~~ 73 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGE---SEKYSLTLKL 73 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEEecHHH
Confidence 4566666653 6899999999999999999999999999999998753 4889999753
No 257
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.61 E-value=0.0013 Score=49.87 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=39.5
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeec-h---HHhhhccc---CCCeEEeecCCCCC---C--CcceEEEeccccc
Q 018565 194 VDIGGNDGTTLRTLTKAFPRI---RGINFDL-P---HVVCVAEK---CHGVEHVGGDMFDG---V--PEADAAIIKWVLH 258 (354)
Q Consensus 194 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~v~~~~~d~~~~---~--~~~D~i~~~~~lh 258 (354)
||||+..|..+..+++..+.. +++.+|. + ...+..++ ..+++++.+|..+- + +++|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999998888766544 5899998 5 33333332 57899999998762 2 3589988854 23
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
. .+.+..-++.+.+.|+| ||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~-ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAP-GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE-EEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCC-CeEEEEeC
Confidence 2 35667789999999999 88666543
No 258
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.60 E-value=0.0041 Score=49.83 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=42.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD 243 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 243 (354)
.++|||||.|.++..+++.+|..+++++|. |.+.+.+++ ..++++....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 777776654 2457777766554
No 259
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=96.60 E-value=0.0024 Score=57.05 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=49.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
+.|++.|...+++.|+.|||+.+|++...+.|+|+.|...|+++++.. ++.|++++...
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~---~~~Y~Lg~~~~ 72 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSAS---DDSFRLTLKVR 72 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC---CCcEEEcHHHH
Confidence 456777765445799999999999999999999999999999998753 37899997653
No 260
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.58 E-value=0.02 Score=58.40 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=73.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC----C--------------------------------------C
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF----P--------------------------------------R 213 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p--------------------------------------~ 213 (354)
+..++....| ..+...++|-.||+|.++++.+... | .
T Consensus 178 Aaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 4445544442 1456899999999999998876521 1 2
Q ss_pred CeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC----cceEEEecccccc-CC-hHHHHHHHHHHHHhcC-
Q 018565 214 IRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP----EADAAIIKWVLHD-WG-DDECIKILKNCKEAIT- 277 (354)
Q Consensus 214 ~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~----~~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~- 277 (354)
.+++++|+ +.+++.++. .+++++..+|+.+ +.+ .+|+|+++-.... +. ..+...+.+.+.+.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 36899999 888888775 4679999999987 322 3899888744321 22 2344555555555554
Q ss_pred --CCCceEEEEee
Q 018565 278 --KDKGKVIIVEA 288 (354)
Q Consensus 278 --p~gG~lli~e~ 288 (354)
| |+++.++..
T Consensus 337 ~~~-g~~~~llt~ 348 (702)
T PRK11783 337 QFG-GWNAALFSS 348 (702)
T ss_pred hCC-CCeEEEEeC
Confidence 7 888877653
No 261
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=96.58 E-value=0.0086 Score=41.05 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=39.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
.++|..+||+.+|+++..+.+.|+.|...|+++..+ .+.|.+++
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~~----~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISRRG----RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC----CCeEEeCC
Confidence 689999999999999999999999999999999876 27787764
No 262
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.54 E-value=0.0034 Score=45.39 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
++.|.++||+.+++++..+++++..|...|+++.... .+|.|.++...
T Consensus 24 ~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G--~~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRG--RGGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETS--TTSEEEESS-C
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCC--CCCceeecCCH
Confidence 4699999999999999999999999999999987641 14789888654
No 263
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.54 E-value=0.0053 Score=55.05 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCceEEEecCCccHHHHHHHHHC--------------------CCCeEEEeec---hHHhhhccc---------------
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAF--------------------PRIRGINFDL---PHVVCVAEK--------------- 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~--------------- 230 (354)
+..+||-||||.|.-..+++..+ +.+.++.+|+ ..++.....
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987777766544 2367899998 345443321
Q ss_pred --------CCCeEEeecCCCC-CC---------CcceEEEeccccccC---ChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 231 --------CHGVEHVGGDMFD-GV---------PEADAAIIKWVLHDW---GDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 231 --------~~~v~~~~~d~~~-~~---------~~~D~i~~~~~lh~~---~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.-+++|...|+++ +. +..++|.+.++++-+ +.....++|.++...++| |..|+|+|.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~-GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP-GSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC-CcEEEEEcC
Confidence 2358889999988 32 136888777666542 455678999999999999 999999884
No 264
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.46 E-value=0.0049 Score=51.78 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=65.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-------CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-------VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-------~~~~D~i~~ 253 (354)
.+.++||+=||+|.++.+.+.+.- -+++.+|. ++.+...++ .+++++...|.+.. ...||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 478999999999999999888743 37889998 666666554 45788999987651 134999998
Q ss_pred ccccccCChHHHHHHHHHHH--HhcCCCCceEEEEeeeeC
Q 018565 254 KWVLHDWGDDECIKILKNCK--EAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~--~~L~p~gG~lli~e~~~~ 291 (354)
--.... .. ...+++..+. .+|++ + .++|+|....
T Consensus 121 DPPY~~-~~-~~~~~l~~l~~~~~l~~-~-~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAK-GL-YYEELLELLAENNLLNE-D-GLIIIEHSKK 156 (183)
T ss_dssp --STTS-CH-HHHHHHHHHHHTTSEEE-E-EEEEEEEETT
T ss_pred CCCccc-ch-HHHHHHHHHHHCCCCCC-C-EEEEEEecCC
Confidence 654432 21 1356777776 67887 5 5677776554
No 265
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.45 E-value=0.034 Score=47.58 Aligned_cols=100 Identities=11% Similarity=0.191 Sum_probs=71.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---------CCcc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---------VPEA 248 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---------~~~~ 248 (354)
+.+++++||||.=+|.-+..++.+.|. -+++.+|+ +...+.+.+ ...|+++.++..+. .+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 446799999999999999999888764 57888888 555444432 68899999987763 1248
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
|.+++-. ..+.....+.++.+++|+ ||.|++-....+.
T Consensus 151 DfaFvDa-----dK~nY~~y~e~~l~Llr~-GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDA-----DKDNYSNYYERLLRLLRV-GGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEcc-----chHHHHHHHHHHHhhccc-ccEEEEeccccCC
Confidence 9888732 233445889999999999 7755554333333
No 266
>PHA00738 putative HTH transcription regulator
Probab=96.45 E-value=0.0041 Score=46.40 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=49.3
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCce---EecCccc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMA---FQQTPLS 100 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---y~~t~~~ 100 (354)
..++.|++.|... ++.++.+|++.+++++..+++.|+.|...|+|..... |+ |++++..
T Consensus 12 ptRr~IL~lL~~~-e~~~V~eLae~l~lSQptVS~HLKvLreAGLV~srK~----Gr~vyY~Ln~~~ 73 (108)
T PHA00738 12 ILRRKILELIAEN-YILSASLISHTLLLSYTTVLRHLKILNEQGYIELYKE----GRTLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHHHc-CCccHHHHHHhhCCCHHHHHHHHHHHHHCCceEEEEE----CCEEEEEECCCc
Confidence 3678889999872 4799999999999999999999999999999988863 54 6666543
No 267
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.42 E-value=0.012 Score=53.30 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=60.6
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-C----
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-G---- 244 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~---- 244 (354)
.+++++.+. ..++..+||.=+|.|..+..++++.|+.+++++|. +.++..+++ ..|++++.++|.+ .
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 356666665 55678999999999999999999988789999999 888887765 4589999998875 2
Q ss_pred ---CCcceEEEec
Q 018565 245 ---VPEADAAIIK 254 (354)
Q Consensus 245 ---~~~~D~i~~~ 254 (354)
..++|.|++-
T Consensus 87 ~~~~~~vDgIl~D 99 (305)
T TIGR00006 87 ELLVTKIDGILVD 99 (305)
T ss_pred hcCCCcccEEEEe
Confidence 1246777663
No 268
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=96.36 E-value=0.0017 Score=46.49 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=48.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC---CceEecCcccc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG---SMAFQQTPLSR 101 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~---~~~y~~t~~~~ 101 (354)
++++|...|... +..+..+|.+.+|++...+++.|+.|...|+++....-.+ -..|++|+.|+
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 467888888764 6999999999999999999999999999999987752211 11388888875
No 269
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=96.17 E-value=0.0043 Score=43.10 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=37.0
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|.+.|.+. +.+|..+||..++++++.++.+|+.|+..|.+++..
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 55667664 789999999999999999999999999999999886
No 270
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=96.14 E-value=0.008 Score=52.70 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=60.3
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
.++...-|.+|+-.|.+ ||.|++||-..+++++..+..-|+-|...|++.+++ +.|++|+.|+.++.
T Consensus 8 ~if~SekRk~lLllL~e--gPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV~~~~-----~~Y~LS~~G~iiv~ 74 (260)
T COG4742 8 LLFLSEKRKDLLLLLKE--GPKTIEEIKNELNVSSSAILPQIKKLKDKGLVVQEG-----DRYSLSSLGKIIVE 74 (260)
T ss_pred HHHccHHHHHHHHHHHh--CCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCEEecC-----CEEEecchHHHHHH
Confidence 34556678889999987 899999999999999999999999999999999997 89999999987665
No 271
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.03 E-value=0.023 Score=48.17 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCceEEEecCCccHHHHH---HHHHC-CCCeEEEeec--hHHhhhccc----CCCeEEeecCCCCC-----C------Cc
Q 018565 189 GIETLVDIGGNDGTTLRT---LTKAF-PRIRGINFDL--PHVVCVAEK----CHGVEHVGGDMFDG-----V------PE 247 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~---l~~~~-p~~~~~~~D~--~~~~~~a~~----~~~v~~~~~d~~~~-----~------~~ 247 (354)
.+..|+++|--.|.-+.. +++.+ ++.+++++|+ ...-..+.+ .+||+++.||..++ + +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 468999999766665554 44555 7889999998 222222333 48999999998763 1 11
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
..+|+. ..-|. .+.+.+.|+.....++| |++++|-|...
T Consensus 112 ~vlVil-Ds~H~--~~hvl~eL~~y~plv~~-G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVIL-DSSHT--HEHVLAELEAYAPLVSP-GSYLIVEDTII 150 (206)
T ss_dssp SEEEEE-SS------SSHHHHHHHHHHT--T-T-EEEETSHHH
T ss_pred ceEEEE-CCCcc--HHHHHHHHHHhCccCCC-CCEEEEEeccc
Confidence 233333 33343 34577889999999999 99888866554
No 272
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=96.03 E-value=0.015 Score=47.92 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=46.3
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
.+|++.+.+. | ...++++|+++||+.+++++..+.++|..|...|++..... .+|.|.+...
T Consensus 9 yAl~~l~~lA-~---~~~~~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG--~~GGy~Lar~ 70 (164)
T PRK10857 9 YAVTAMLDVA-L---NSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG--PGGGYLLGKD 70 (164)
T ss_pred HHHHHHHHHH-h---CCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC--CCCCeeccCC
Confidence 3455555544 1 12126899999999999999999999999999999997631 1467887754
No 273
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=95.95 E-value=0.011 Score=50.52 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=48.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC----CceEecCcccch
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG----SMAFQQTPLSRR 102 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~----~~~y~~t~~~~~ 102 (354)
-.|...|.+. +|+|+.+||+++|+++..+++.|+.|++.|+++......| .-.|++|..+..
T Consensus 14 ~~il~lL~~~-g~~sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 14 ERILELLKKS-GPVSADELAEELGISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHHhcc-CCccHHHHHHHhCCCHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 3455566654 8999999999999999999999999999999987632211 224999988764
No 274
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.94 E-value=0.02 Score=53.72 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=73.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHhhhccc--------CCCeEEeecCCCCCC------C-cceEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRI-RGINFDL-PHVVCVAEK--------CHGVEHVGGDMFDGV------P-EADAA 251 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~~~------~-~~D~i 251 (354)
.+.+|||+=|=||.++...+.. +. ++|.+|+ ...+..+++ ..+++++.+|.++-. + .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 3789999999999999988875 45 8999999 778887775 567899999999821 2 49999
Q ss_pred Eecccccc------CC-hHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 252 IIKWVLHD------WG-DDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 252 ~~~~~lh~------~~-~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
++--.-.. |+ ..+-..++..+.+.|+| ||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p-gG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP-GGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCC-CCEEEEEec
Confidence 98321111 11 22457889999999999 998887653
No 275
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=95.89 E-value=0.012 Score=47.22 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=44.5
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
++.++.+||+.+++++..+.+.|+.|...|++.+.. .+.|++|+.|+.+.
T Consensus 21 ~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~~----~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEK----YRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEec----CceEEECHHHHHHH
Confidence 789999999999999999999999999999998765 37899999986444
No 276
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.88 E-value=0.03 Score=52.50 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=69.2
Q ss_pred CceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc------CCCeEEeecCCCCC--C--CcceEEEecccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG--V--PEADAAIIKWVL 257 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~--~--~~~D~i~~~~~l 257 (354)
..+|||.-||+|..++.++.+.++ -+++..|+ ++.++.+++ ..++++..+|...- . ..||+|.+-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999998654 46899999 888777654 24578888888762 1 3499998844 2
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
. .+ ..++..+.+.+++ ||.|.+.-
T Consensus 124 G-s~----~~fld~al~~~~~-~glL~vTa 147 (374)
T TIGR00308 124 G-TP----APFVDSAIQASAE-RGLLLVTA 147 (374)
T ss_pred C-Cc----HHHHHHHHHhccc-CCEEEEEe
Confidence 2 11 2678888889998 99999874
No 277
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.86 E-value=0.012 Score=43.75 Aligned_cols=65 Identities=23% Similarity=0.413 Sum_probs=49.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
++.++..|... ++.|..+||+.+++++..+.+.|+-|...|+++......+ ...|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 55667777653 6899999999999999999999999999999987752100 12477777765433
No 278
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=95.85 E-value=0.015 Score=38.68 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=40.5
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|++.|... +.+|+++||+.+|+++.-++|=|..|...|++.+..
T Consensus 4 ~Il~~l~~~-~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 4 QILELLKEK-GKVSVKELAEEFGVSEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHHc-CCEEHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 356677664 799999999999999999999999999999999887
No 279
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=95.82 E-value=0.015 Score=44.99 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=52.5
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
..+..|+..|... ++.|..+||+.+++++..+.+.++-|...|+++......+ .-.|.+|+.|+.+..
T Consensus 28 ~~q~~iL~~l~~~-~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 28 EQQWRILRILAEQ-GSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3445577777664 7899999999999999999999999999999998642111 125889988864443
No 280
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.82 E-value=0.013 Score=45.35 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=41.4
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
.+..++-.|-+..+|.|+++||+.++.+...+.+-|+-|...|++.+...
T Consensus 28 ~Dv~v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 28 LDVEVYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeee
Confidence 34555555552128999999999999999999999999999999998863
No 281
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.81 E-value=0.059 Score=47.16 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=65.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc------------CCCeEEeecCCCCC------CCc-ce
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK------------CHGVEHVGGDMFDG------VPE-AD 249 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~~v~~~~~d~~~~------~~~-~D 249 (354)
...+||++|+|+|.-++..+. .....++.-|.+..+...+. +..+.+...+.-.+ .++ +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 457899999999955544444 45778888888766654432 23455554444331 234 89
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
+|+.+.+++. +.....+++.++..|.. ++.+++.-..+.
T Consensus 165 lilasDvvy~--~~~~e~Lv~tla~ll~~-~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYE--EESFEGLVKTLAFLLAK-DGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeec--CCcchhHHHHHHHHHhc-CCeEEEEEeccc
Confidence 9999999876 44455777778888887 775555544443
No 282
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=95.79 E-value=0.0082 Score=40.45 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=37.0
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|.+.|....+|.|..|||+.+|++....+++|..|...|.++...
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3555555422799999999999999999999999999999998754
No 283
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=95.77 E-value=0.0076 Score=40.65 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=38.7
Q ss_pred HcChhhhhhhCCCC--CCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSP--ITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~--~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++.|+..|... ++ +|+.+||+.+++++..+.+.++.|...|++++..
T Consensus 7 q~~vL~~l~~~-~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARH-PGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHS-TTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 44556666654 34 8999999999999999999999999999998875
No 284
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=95.75 E-value=0.014 Score=49.98 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=49.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc----eEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM----AFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~----~y~~t~~~~~l~ 104 (354)
+..|+..|... ++.|+.+||+.+|+++..+.+.|+.|...|+++......+.| .|++|+.++.+.
T Consensus 3 r~~IL~~L~~~-~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 3 KEDILSYLLKQ-GQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 34567777654 789999999999999999999999999999998762100112 378998876433
No 285
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.056 Score=42.86 Aligned_cols=106 Identities=11% Similarity=0.182 Sum_probs=69.6
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCcc
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPEA 248 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~ 248 (354)
.++..+. ..+..+.+|+|.|.|......++.. -...+++++ |..+...+- ..+.+|..-|+++ +..+|
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 3344444 4456899999999999988877754 346788888 666554431 6788899999998 77776
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
.-++++.+ +.-...+-.+++.-|+. +.+++-.-+-+|+
T Consensus 140 ~~vviFga-----es~m~dLe~KL~~E~p~-nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFGA-----ESVMPDLEDKLRTELPA-NTRVVACRFPLPT 177 (199)
T ss_pred ceEEEeeh-----HHHHhhhHHHHHhhCcC-CCeEEEEecCCCc
Confidence 54444322 22223444566667777 7777766554443
No 286
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.12 Score=47.35 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=73.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeec-CCCC-CCCc--ceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGG-DMFD-GVPE--ADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~-d~~~-~~~~--~D~i~~~~ 255 (354)
..++..|||==||||.++.+..-. +++++|.|+ ..|++-++. -....+... |... |+++ +|.|++--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456779999999999999987765 789999999 788887765 234444444 8877 7775 89998732
Q ss_pred cc------ccCC-hHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 256 VL------HDWG-DDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 256 ~l------h~~~-~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.- .--. ++-..++|..+.+.||+ ||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~-gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP-GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc-CcEEEEecC
Confidence 22 1111 45578899999999999 999887543
No 287
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=95.63 E-value=0.014 Score=49.85 Aligned_cols=90 Identities=9% Similarity=0.123 Sum_probs=61.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhcCCCcchHHHHHHh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLE 118 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~ 118 (354)
++.|+..|....+.+...|||.++|+.++.+...++-|+..|++++.+. ++|..|..+..........++.+....
T Consensus 12 ~fqIL~ei~~~qp~v~q~eIA~~lgiT~QaVsehiK~Lv~eG~i~~~gR----~~Y~iTkkG~e~l~~~~~dlr~f~~ev 87 (260)
T COG1497 12 RFQILSEIAVRQPRVKQKEIAKKLGITLQAVSEHIKELVKEGLIEKEGR----GEYEITKKGAEWLLEQLSDLRRFSEEV 87 (260)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHHHhccceeecCC----eeEEEehhHHHHHHHHHHHHHHHHHHH
Confidence 3445555544336779999999999999999999999999999999874 799999998533322222455544433
Q ss_pred -cCchhhhhhhhHHH
Q 018565 119 -SSPVMLAPWHSLGT 132 (354)
Q Consensus 119 -~~~~~~~~~~~l~~ 132 (354)
..-.+...|..++.
T Consensus 88 ~~~l~~~~vw~AIA~ 102 (260)
T COG1497 88 ELVLDYVMVWTAIAK 102 (260)
T ss_pred HHHHhhHHHHHHhhH
Confidence 11123445655554
No 288
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=95.62 E-value=0.018 Score=41.88 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=53.0
Q ss_pred HHHHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHH----------HhccCceeeccCCCCCceEecCcccchhh
Q 018565 36 CAVELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRF----------LIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 36 ~a~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~----------L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
.=++..|+..|.+. +.+.++.|||..+|.++..+..-|+- |+.+|++++....+|...|++|+.++.+.
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~G~~~~ 87 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGSDYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEKGKRIA 87 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCCCHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChhhhhHH
Confidence 45678888888775 46889999999999999999998875 89999993332222345699999886443
No 289
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=95.62 E-value=0.023 Score=36.98 Aligned_cols=44 Identities=32% Similarity=0.341 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHh
Q 018565 30 NMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLI 77 (354)
Q Consensus 30 ~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~ 77 (354)
...+|.+|++.|-||.= ...|++|||+.+|+++..+...||-..
T Consensus 5 Q~e~L~~A~~~GYfd~P----R~~tl~elA~~lgis~st~~~~LRrae 48 (53)
T PF04967_consen 5 QREILKAAYELGYFDVP----RRITLEELAEELGISKSTVSEHLRRAE 48 (53)
T ss_pred HHHHHHHHHHcCCCCCC----CcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45789999999999972 478999999999999998888887543
No 290
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.59 E-value=0.042 Score=50.44 Aligned_cols=97 Identities=22% Similarity=0.163 Sum_probs=77.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--CC-CcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--GV-PEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~~-~~~D~i~~~~~l 257 (354)
++.+|||.=+|.|.+++.+++... .+++.+|+ |+.+..+++ ..+++.+.||... +. +.+|-|++...-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 578999999999999999998643 33999999 888887664 5669999999988 33 459999997643
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCC
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEED 293 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~ 293 (354)
...+++..+.+.+++ ||.+...+....+.
T Consensus 267 ------~a~~fl~~A~~~~k~-~g~iHyy~~~~e~~ 295 (341)
T COG2520 267 ------SAHEFLPLALELLKD-GGIIHYYEFVPEDD 295 (341)
T ss_pred ------cchhhHHHHHHHhhc-CcEEEEEeccchhh
Confidence 234778888889998 99988888765443
No 291
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=95.45 E-value=0.0095 Score=39.79 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=38.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++.++..|... ++.|..+||+.+++++..+.++++-|...|++++..
T Consensus 5 q~~iL~~l~~~-~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 5 QFRILRILYEN-GGITQSELAEKLGISRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 34445555554 689999999999999999999999999999998875
No 292
>PRK11050 manganese transport regulator MntR; Provisional
Probab=95.39 E-value=0.075 Score=43.18 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=47.7
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
|...+.. +++.+..+||+.+++++..+.++|+-|...|++.... ...+.+|+.++.+.
T Consensus 42 I~~~l~~-~~~~t~~eLA~~l~is~stVsr~l~~Le~~GlI~r~~----~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAE-VGEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMRP----YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHh-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec----CCceEECchHHHHH
Confidence 4455554 3689999999999999999999999999999998765 26788888876543
No 293
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.36 E-value=0.13 Score=43.00 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=64.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-----C-CCcceEEEec
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-----G-VPEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-----~-~~~~D~i~~~ 254 (354)
.+.++||+=+|+|.++.+.+.+.- .+++.+|. ......+++ ..++++...|... . .++||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 468999999999999999988753 46788887 555555443 4788888888773 1 2249999997
Q ss_pred ccccc-CChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 255 WVLHD-WGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 255 ~~lh~-~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
-..+. +-+....-++-.-..+|+| +|. +++|..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~-~~~-iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP-GAL-IVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC-CcE-EEEEeC
Confidence 66651 1111212222224577998 664 455544
No 294
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.32 E-value=0.024 Score=42.44 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=26.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL 221 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 221 (354)
.+....+|+|||.|.+.--|.+. +.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 45678999999999988877776 678889995
No 295
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=95.27 E-value=0.029 Score=36.18 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=38.1
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+++.|... ++.|+.+|++.+++++..+.+.|+.|...|++....
T Consensus 5 il~~l~~~-~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 5 ILELLAQQ-GKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEee
Confidence 45555543 689999999999999999999999999999998776
No 296
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=95.26 E-value=0.027 Score=48.20 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=48.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
.+..++..|... ++.+..+||+.+++++..+.+.|+.|...|++++.+. ....|.+|+.|
T Consensus 144 ~~~~IL~~l~~~-g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~--r~~~~~lT~~G 203 (203)
T TIGR01884 144 EELKVLEVLKAE-GEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGR--KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC--CccEEEeCCCC
Confidence 345677777654 6899999999999999999999999999999998851 13568888754
No 297
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=95.22 E-value=0.028 Score=45.68 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=46.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
++++..+||+.++++|..+...++-|...|++++.. .+.+.+|+.|+-+..
T Consensus 23 ~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~~~~----y~gi~LT~~G~~~a~ 73 (154)
T COG1321 23 GFARTKDIAERLKVSPPSVTEMLKRLERLGLVEYEP----YGGVTLTEKGREKAK 73 (154)
T ss_pred CcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeEEec----CCCeEEChhhHHHHH
Confidence 899999999999999999999999999999999987 489999999875544
No 298
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=95.12 E-value=0.027 Score=45.59 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=41.4
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
++.|+++||+..|++|..++++|..|...|+++..... .|.|+|+...
T Consensus 24 ~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~--~GGy~Lar~~ 71 (150)
T COG1959 24 GPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGK--GGGYRLARPP 71 (150)
T ss_pred CcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCC--CCCccCCCCh
Confidence 38999999999999999999999999999999877521 5789888653
No 299
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=95.09 E-value=0.03 Score=44.54 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=39.8
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
++.|+++||+.+++++..++++|..|...|++..... ..|.|+++..
T Consensus 24 ~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G--~~Ggy~l~~~ 70 (135)
T TIGR02010 24 GPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRG--PGGGYQLGRP 70 (135)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeC--CCCCEeccCC
Confidence 5899999999999999999999999999999986531 1367887754
No 300
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=95.08 E-value=0.027 Score=44.53 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=40.1
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
++.|.++||+.+++++..++++|+.|...|++..... .+|.|.++...
T Consensus 24 ~~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g--~~ggy~l~~~~ 71 (132)
T TIGR00738 24 GPVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRG--PGGGYRLARPP 71 (132)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccC--CCCCccCCCCH
Confidence 5999999999999999999999999999999987531 13578776543
No 301
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=95.07 E-value=0.037 Score=38.31 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=44.4
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
++.++..|.+ ++.+..+||+.+|++...+.+.++.|.+.|+...... ..|++....
T Consensus 2 ~~~il~~L~~--~~~~~~eLa~~l~vS~~tv~~~l~~L~~~g~~i~~~~----~g~~l~~~~ 57 (69)
T TIGR00122 2 PLRLLALLAD--NPFSGEKLGEALGMSRTAVNKHIQTLREWGVDVLTVG----KGYRLPPPI 57 (69)
T ss_pred hHHHHHHHHc--CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEecC----CceEecCcc
Confidence 3456777876 7899999999999999999999999999999544431 567665543
No 302
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=95.04 E-value=0.024 Score=41.59 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=47.2
Q ss_pred hhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCCC--ceEecCcccchhhc
Q 018565 42 IAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQGS--MAFQQTPLSRRLMR 105 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~~~~~l~~ 105 (354)
|+..|.. ++....||.+.+ |+++..+.+-|+.|...|++++......+ -.|++|+.|+.|.+
T Consensus 10 IL~~l~~--g~~rf~el~~~l~~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ--GPMRFSELQRRLPGISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT--SSEEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHhcchhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 4555655 799999999999 99999999999999999999886421111 24999999876664
No 303
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=95.03 E-value=0.034 Score=44.69 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=49.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
+..|+..|... +++|..+||+.+++++..+.++++-|...|++++....+ ++ .+.+|+.|+.+.
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~-DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPN-DKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcc-cCCeeEeEEChhHHHHH
Confidence 34556777653 689999999999999999999999999999999875211 22 367777776443
No 304
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=94.99 E-value=0.026 Score=38.71 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=44.4
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCC-----CcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 42 IAEAVEEKGSPITLNELASALKC-----DPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~-----~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
|++.|.+.++|++..+|++.++. ++..+++.|++|...|++.+.+ -+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g----~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG----RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC----CcccccCHHHH
Confidence 56677766689999999999854 3589999999999999888766 25567887653
No 305
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.067 Score=51.13 Aligned_cols=90 Identities=22% Similarity=0.248 Sum_probs=64.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C-CC---cceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G-VP---EADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~-~~---~~D~i~~ 253 (354)
..+..+++|+=||.|.++..++++ ..+++++++ ++.++.|++ .++++|..++..+ + .. .+|+|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 568999999 888888765 4669999998887 2 21 4798887
Q ss_pred ccccccCChHHHH-HHHHHHHHhcCCCCceEEE
Q 018565 254 KWVLHDWGDDECI-KILKNCKEAITKDKGKVII 285 (354)
Q Consensus 254 ~~~lh~~~~~~~~-~~L~~~~~~L~p~gG~lli 285 (354)
+-|-.-+. .+++.+.+ ++| ...++|
T Consensus 369 -----DPPR~G~~~~~lk~l~~-~~p-~~IvYV 394 (432)
T COG2265 369 -----DPPRAGADREVLKQLAK-LKP-KRIVYV 394 (432)
T ss_pred -----CCCCCCCCHHHHHHHHh-cCC-CcEEEE
Confidence 32222222 55555554 455 455555
No 306
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.96 E-value=0.082 Score=47.54 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=68.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCCC------CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFDG------VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~~------~~~~D~i~~ 253 (354)
.+.+|||+=|=+|.++...+.. ...+++.+|. ...++.+++ ..+++++..|+++. ...||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999987664 3347999999 777777764 36899999999872 235999988
Q ss_pred cccc---ccCC-hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 254 KWVL---HDWG-DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 254 ~~~l---h~~~-~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
--.- ..+. ...-.++++.+.+.|+| ||.|+.+.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~-gG~l~~~s 238 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP-GGLLLTCS 238 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCEEEEEc
Confidence 2111 1111 23456889999999999 99876543
No 307
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=94.91 E-value=0.043 Score=46.70 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 28 FTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 28 ~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
+-..++|...++..|++.|... +|+.+.|||+.+|+++.-+..-+..|...|+++..
T Consensus 14 ~dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgLpqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 14 LDVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGLPQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCchhhhhhhHHHHHhcCceeee
Confidence 3456788889999999999875 79999999999999999999999999999999755
No 308
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.89 E-value=0.06 Score=48.80 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=50.1
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD 243 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~ 243 (354)
.+++++.+. ..+...+||.=-|.|..+..+++++|+.+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 456666666 66788999999999999999999999999999999 889877764 5789999988765
No 309
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=94.88 E-value=0.032 Score=38.09 Aligned_cols=37 Identities=32% Similarity=0.464 Sum_probs=31.7
Q ss_pred CCCCCHHHHHhHcCCC-cccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKCD-PSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~-~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|-|-|+.|||+.+|+. +..+.+.|++|...|++....
T Consensus 23 G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 23 GYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp SS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccCCC
Confidence 4577999999999996 999999999999999999886
No 310
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=94.81 E-value=0.076 Score=42.64 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=48.1
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCC--ceEecCcccchhhc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGS--MAFQQTPLSRRLMR 105 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~~~~~l~~ 105 (354)
-++..|...+++.|..+||+.+++++..+.++++-|...|++++....++. -.+.+|+.|+.+..
T Consensus 35 ~vL~~l~~~~~~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 35 VTLHNIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 345666543346899999999999999999999999999999987531111 13778887764443
No 311
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=94.81 E-value=0.051 Score=41.83 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=45.4
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 39 ELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+..|++.|...+++.|++||.+.+ +++..-+.|.|+.|+..|++.+....++...|.++
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~~~ 66 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELN 66 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEEeC
Confidence 445777786545789999999998 67889999999999999999987643223456543
No 312
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=94.81 E-value=0.05 Score=35.64 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=33.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKF 81 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~ 81 (354)
.|+..|....+++|+++||+.++++.+-+.+-|..|...|+
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~~~~ 44 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGVSRRTIRRDIKELREWGI 44 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 45666744346899999999999999999999999999993
No 313
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=94.79 E-value=0.045 Score=41.73 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=48.2
Q ss_pred HHcChhhhhh----hCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc--eEecCcccchhh
Q 018565 38 VELGIAEAVE----EKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM--AFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~----~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t~~~~~l~ 104 (354)
.++.++..|. . +++.|..+||+.+++++..+.+.++-|...|++.+.....+.. .+.+|+.++.+.
T Consensus 26 ~q~~vL~~l~~~~~~-~~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 26 EELLILYYLGKLENN-EGKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred HHHHHHHHHHhhhcc-CCcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 3455555555 3 2689999999999999999999999999999999775321112 266777665433
No 314
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.75 E-value=0.074 Score=50.79 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=64.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHhhhcccCCCeEEeecCCCCCC---C-cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-----PHVVCVAEKCHGVEHVGGDMFDGV---P-EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~~~---~-~~D~i~~~~~l 257 (354)
......|+|..+|.|.++.+|... | +.+.+. ++.+...-+.. .--+-.|..+++ | .||++.+.+++
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRG-LIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRG-LIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcc-cchhccchhhccCCCCcchhheehhhhh
Confidence 345689999999999999999764 3 333332 33332222111 112334555543 4 39999999988
Q ss_pred ccCChH-HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWGDD-ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~~~-~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..+.+. ....+|-++-|.|+| ||.++|-|
T Consensus 438 s~~~~rC~~~~illEmDRILRP-~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRP-GGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCC-CceEEEec
Confidence 776543 567899999999999 99998854
No 315
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.73 E-value=0.12 Score=43.50 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=61.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------CCCeEEeecCCCC-CC----------Cc-
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------CHGVEHVGGDMFD-GV----------PE- 247 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~-~~----------~~- 247 (354)
+...|+-+|||-=.....+....+++++.-+|+|++++.-++ ..+.+++..|+.+ ++ ++
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 345999999999999999988878899999999988876543 1336789999997 21 11
Q ss_pred ceEEEeccccccCChHHHHHHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNC 272 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~ 272 (354)
.-++++-.++.+++++++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 4578888999999999999988876
No 316
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=94.72 E-value=0.047 Score=42.11 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 30 NMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 30 ~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+-+-+--.+.|++.|+.. +|.|+.|+|+..|-++..+.|-|+.|...|++..+.
T Consensus 57 ~la~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgRdv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 57 DLARVLSPRNLELLELIAQE-EPASINELAELVGRDVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred HHHHHhChhHHHHHHHHHhc-CcccHHHHHHHhCcchHHHHHHHHHHHhcCeEEEec
Confidence 34445555678899999875 799999999999999999999999999999998876
No 317
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.68 E-value=0.64 Score=43.63 Aligned_cols=103 Identities=19% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCceEEEecCCccHHHHHH--------HHH-------CCCCeEEEeechHH-----hhhcc---------------cCCC
Q 018565 189 GIETLVDIGGNDGTTLRTL--------TKA-------FPRIRGINFDLPHV-----VCVAE---------------KCHG 233 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~~-----~~~a~---------------~~~~ 233 (354)
...+|+|+|||+|..+..+ .++ -|.+++..-|+|.- ..... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999766443 222 25678888887511 11110 0111
Q ss_pred ---eEEeecCCCC-CCCc--ceEEEeccccccCCh---H---------------------------------HHHHHHHH
Q 018565 234 ---VEHVGGDMFD-GVPE--ADAAIIKWVLHDWGD---D---------------------------------ECIKILKN 271 (354)
Q Consensus 234 ---v~~~~~d~~~-~~~~--~D~i~~~~~lh~~~~---~---------------------------------~~~~~L~~ 271 (354)
+.-++|.|.. -+|+ -++++.++.+|-++. . +...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3335678888 3563 799999999985441 0 12234444
Q ss_pred HHHhcCCCCceEEEEeeeeCC
Q 018565 272 CKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 272 ~~~~L~p~gG~lli~e~~~~~ 292 (354)
=.+-|.| ||++++.-.-+++
T Consensus 223 Ra~ELvp-GG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKR-GGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhcc-CcEEEEEEecCCC
Confidence 4566899 9999998766653
No 318
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=94.66 E-value=0.062 Score=36.04 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=37.4
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|+..|.. ++.|..+|++.+|+++..+.+.|+.|...|++....
T Consensus 2 il~~l~~--~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 2 ILKLLAE--GELCVCELAEILGLSQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred HHHHhhc--CCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeee
Confidence 4455553 799999999999999999999999999999998665
No 319
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=94.65 E-value=0.062 Score=43.69 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=40.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
++.|+.+||+..++++..++++|..|...|+++.... ..|.|+++..
T Consensus 23 ~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG--~~GGy~La~~ 69 (153)
T PRK11920 23 KLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRG--RNGGVRLGRP 69 (153)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecC--CCCCeeecCC
Confidence 5789999999999999999999999999999987752 1477888754
No 320
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.61 E-value=0.017 Score=43.50 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=43.8
Q ss_pred cceEEEecccc---c-cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhc--cHHhhcccCCccc
Q 018565 247 EADAAIIKWVL---H-DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLML--DMVMMAHTNKGKE 320 (354)
Q Consensus 247 ~~D~i~~~~~l---h-~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~g~~ 320 (354)
.||+|+|.+|. | +|.|+-...+++++++.|+| ||.+++ |+-. +....... .-..... ...-.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p-GG~lil-EpQ~---------w~sY~~~~~~~~~~~~n-~~~i~ 68 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP-GGILIL-EPQP---------WKSYKKAKRLSEEIREN-YKSIK 68 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEE-E------------HHHHHTTTTS-HHHHHH-HHH--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC-CCEEEE-eCCC---------cHHHHHHhhhhHHHHhH-HhceE
Confidence 38999997765 2 46788999999999999999 776554 4311 11110000 0000000 11122
Q ss_pred CCHHHHHHHHHH--cCCceeEEEEcC
Q 018565 321 RSLKEWDYVLRQ--AGFSRYNITSIH 344 (354)
Q Consensus 321 ~t~~e~~~ll~~--aGf~~~~~~~~~ 344 (354)
..++++...|.+ .||+..+....+
T Consensus 69 lrP~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 69 LRPDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp --GGGHHHHHTSTTT---EEEEE---
T ss_pred EChHHHHHHHHhcccceEEEEEcccC
Confidence 345678887777 699998866654
No 321
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=94.59 E-value=0.12 Score=34.99 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 53 ITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 53 ~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|..+||+.+|+++..+.+.|..|...|+++...
T Consensus 26 ~~~~~la~~~~is~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGVSRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 3599999999999999999999999999998765
No 322
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.53 E-value=0.38 Score=44.72 Aligned_cols=78 Identities=22% Similarity=0.078 Sum_probs=58.2
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCC---------------------------------------eEE
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRI---------------------------------------RGI 217 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 217 (354)
..++..-. +.+...++|==||+|.++++.+...+++ .++
T Consensus 181 aAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 181 AAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 34444334 4455799999999999999988766532 167
Q ss_pred Eeec-hHHhhhccc-------CCCeEEeecCCCC-CC--CcceEEEeccc
Q 018565 218 NFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GV--PEADAAIIKWV 256 (354)
Q Consensus 218 ~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~--~~~D~i~~~~~ 256 (354)
+.|+ +.+++.|+. .+.|+|..+|+.. .. .++|+|+++-.
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP 308 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP 308 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC
Confidence 9999 899888774 6889999999887 33 36899988643
No 323
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.52 E-value=1.6 Score=37.95 Aligned_cols=124 Identities=17% Similarity=0.098 Sum_probs=67.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCC-----cceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVP-----EADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~-----~~D~i~~~~~l 257 (354)
.+++||=||=.- ..+++++-.++..+++++|+ +.+++..++ +-.|+.+..|+..+.| .||+++.--.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 468999998443 44555555566679999999 666665543 4559999999999766 3999988542
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
++.+-+.-++.+..++||. .|....+.....+... ..--++++.+.+.||.+
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~-~g~~gy~~~~~~~~s~-------------------------~~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG-EGCAGYFGFTHKEASP-------------------------DKWLEVQRFLLEMGLVI 173 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S-TT-EEEEEE-TTT--H-------------------------HHHHHHHHHHHTS--EE
T ss_pred --CCHHHHHHHHHHHHHHhCC-CCceEEEEEecCcCcH-------------------------HHHHHHHHHHHHCCcCH
Confidence 3456788899999999997 5533333221111000 00124567777888888
Q ss_pred eEEEE
Q 018565 338 YNITS 342 (354)
Q Consensus 338 ~~~~~ 342 (354)
.+++|
T Consensus 174 ~dii~ 178 (243)
T PF01861_consen 174 TDIIP 178 (243)
T ss_dssp EEEEE
T ss_pred HHHHh
Confidence 88766
No 324
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.73 Score=41.42 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=98.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC--CCCeEEEeechHHhhhccc----------------------------CCCeEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF--PRIRGINFDLPHVVCVAEK----------------------------CHGVEH 236 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~----------------------------~~~v~~ 236 (354)
......|+.+|||.-.....+...+ +...++-+|.|.++..--. ..+...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3467899999999999999999877 7888999998776653210 234444
Q ss_pred eecCCCC--CC----------Cc-ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhh
Q 018565 237 VGGDMFD--GV----------PE-ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSV 303 (354)
Q Consensus 237 ~~~d~~~--~~----------~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~ 303 (354)
...|..+ .+ .+ .-+++.-.+|-++++++...+++-+.+.++. +.+++.|.+.+.+.. .
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~--a~fv~YEQi~~~D~F-g------ 235 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN--AHFVNYEQINPNDRF-G------ 235 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc--ccEEEEeccCCCChH-H------
Confidence 5555543 11 01 2355666788888899999999999998864 788889988865443 1
Q ss_pred hhhccHHhh--cccCCc--ccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 304 RLMLDMVMM--AHTNKG--KERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 304 ~~~~~l~~~--~~~~~g--~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
..|--+.. ...-.| .-.|.+..++-+.++||+.+.+..+
T Consensus 236 -~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 236 -KVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred -HHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 11211111 110011 2237888888999999999988765
No 325
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=94.47 E-value=0.081 Score=44.10 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=41.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..|++.|... |++|.++||+.+|++...++++|..|...|++....
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEee
Confidence 4488888765 799999999999999999999999999999998554
No 326
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=94.45 E-value=0.052 Score=36.43 Aligned_cols=37 Identities=19% Similarity=0.436 Sum_probs=34.2
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+++++..+||+.+|+++..+...++-|...|+++...
T Consensus 20 ~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEEecC
Confidence 3799999999999999999999999999999999876
No 327
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=94.45 E-value=0.063 Score=37.27 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=43.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
+..|+..+.. ++.+..+|++.+|++...+.+.|+.|.+.|++...... ....|++|+
T Consensus 9 ~~~il~~l~~--~~~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~-~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLE--GPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREG-RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHH--CCcCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEec-cEEEEEeCC
Confidence 3446666665 45999999999999999999999999999999876520 124566665
No 328
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=94.43 E-value=0.046 Score=43.14 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
++.|+.+||+++|+++..+.++|+.|...|++..... ..+.|.+..
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g--~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRG--VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCC--CCCChhhcC
Confidence 6899999999999999999999999999999986531 135676654
No 329
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=94.38 E-value=0.038 Score=31.74 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=26.2
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCce
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFF 82 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l 82 (354)
|+|-+|||+.+|+.+.-++|.|.-|...|++
T Consensus 2 ~mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 5788999999999999999999999999875
No 330
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.35 E-value=0.32 Score=44.69 Aligned_cols=93 Identities=18% Similarity=0.142 Sum_probs=65.4
Q ss_pred cCCCceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecC---CCCCCCc-ceEEEeccccccC
Q 018565 187 FDGIETLVDIGGN-DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGD---MFDGVPE-ADAAIIKWVLHDW 260 (354)
Q Consensus 187 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d---~~~~~~~-~D~i~~~~~lh~~ 260 (354)
..++.+|+=+|.| .|+++..+++..- .+++++|. ++-.+.+++...-.++... ..+...+ +|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 5678888888855 6688888888765 89999999 7777777774444444433 2222222 899887654 2
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
..+....++|++ ||+++++-...
T Consensus 240 ------~~~~~~l~~l~~-~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR-GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc-CCEEEEECCCC
Confidence 336667778899 99999987663
No 331
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=94.32 E-value=0.091 Score=42.08 Aligned_cols=61 Identities=10% Similarity=0.150 Sum_probs=46.3
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
++|++.+.++.+ .. +.+.+.++||+.+|+++..+++.|..|...|+++..... .|.|.++.
T Consensus 9 YAl~~~i~la~~---~~-g~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~--~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASL---PE-GRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGK--NGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcC---CC-CCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCC--CCCeeecC
Confidence 355555555543 22 257899999999999999999999999999999877621 35687764
No 332
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=94.16 E-value=0.059 Score=39.88 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=40.3
Q ss_pred HHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 55 LNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 55 ~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
+.+||+.+|+++..+.+.|+-|...|++.... +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~is~stvs~~l~~L~~~glI~r~~----~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNVSPPTVTQMLKKLEKDGLVEYEP----YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCEEEcC----CCceEechhHHHHH
Confidence 56899999999999999999999999999987 36799998876443
No 333
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=94.13 E-value=0.098 Score=34.59 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=33.0
Q ss_pred CCC-CHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPI-TLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~-t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+ |..+||+.+|+++..+++.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 455 899999999999999999999999999998765
No 334
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=93.96 E-value=0.062 Score=40.76 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=42.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|+..|... ++.|..+||+.+|+++..+.+.++.|...|++....
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~~~ 51 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYT 51 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeceE
Confidence 456788888774 689999999999999999999999999999998443
No 335
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=93.83 E-value=0.078 Score=38.78 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=43.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+.|+.+|... +|-.+.-||..++++...+...|+-|..+|++++..
T Consensus 8 l~~~IL~hl~~~-~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 8 LDLKILQHLKKA-GPDYAKSIARRLKIPLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred hHHHHHHHHHHH-CCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEec
Confidence 456677788764 799999999999999999999999999999999997
No 336
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.79 E-value=0.21 Score=46.28 Aligned_cols=108 Identities=15% Similarity=0.282 Sum_probs=73.7
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec---hHHhhhccc-------------CCCeEEeecCC
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL---PHVVCVAEK-------------CHGVEHVGGDM 241 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~-------------~~~v~~~~~d~ 241 (354)
.+.+.+. ..+.....|+|+|.|.....++.....-.-+|+.+ |.-+...+. ...++.+.++|
T Consensus 183 si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 183 SIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3344444 66778999999999999988777544444455554 333332221 45688889999
Q ss_pred CCC------CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 242 FDG------VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 242 ~~~------~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
..+ .+.+++|+.+++... ++...+ +.++..-+++ |.+++-.+...+
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~Fd--p~L~lr-~~eil~~ck~-gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAFD--PELKLR-SKEILQKCKD-GTRIISSKPLVP 312 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccCC--HHHHHh-hHHHHhhCCC-cceEeccccccc
Confidence 884 245999999998753 444333 4477777888 888888777766
No 337
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.75 E-value=0.27 Score=44.37 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=41.5
Q ss_pred CCceEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeec----CCCCCC----CcceE
Q 018565 189 GIETLVDIGGNDGTT-LRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGG----DMFDGV----PEADA 250 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~----d~~~~~----~~~D~ 250 (354)
...++||||+|.... .+--++.+ ++++++.|+ +..++.|++ .++|+++.. +++... ..||+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 467999999998744 33334444 899999999 888887764 578888754 455532 13999
Q ss_pred EEeccccccCC
Q 018565 251 AIIKWVLHDWG 261 (354)
Q Consensus 251 i~~~~~lh~~~ 261 (354)
.+|+-.+|.-.
T Consensus 181 tmCNPPFy~s~ 191 (299)
T PF05971_consen 181 TMCNPPFYSSQ 191 (299)
T ss_dssp EEE-----SS-
T ss_pred EecCCccccCh
Confidence 99988888633
No 338
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.65 E-value=1.1 Score=42.00 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=70.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CC---cceEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR--IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VP---EADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~---~~D~i 251 (354)
-.++.+|||.-++.|.=+..+++..++ ..++.+|. ++-+...++ ..++.....|... + .+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 557799999999999999999997765 55689998 544444432 3446677766543 1 22 28998
Q ss_pred Eec------ccc-------ccCChHHH-------HHHHHHHHHhcCCCCceEEEEeeee
Q 018565 252 IIK------WVL-------HDWGDDEC-------IKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 252 ~~~------~~l-------h~~~~~~~-------~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
++- .++ ..+...+. .++|+.+.+.||| ||.|+.+.-.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~-GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP-GGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEccCC
Confidence 872 222 22333321 4789999999999 99888865433
No 339
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.62 E-value=0.84 Score=43.65 Aligned_cols=102 Identities=20% Similarity=0.159 Sum_probs=73.1
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc-----cCCCeEEeecCCCC-CCC--cceEEEeccccccCC
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE-----KCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWG 261 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~ 261 (354)
-+++-+|||.-.+...+-+.. .-.++.+|. +-+++... ......+...|+.. .++ +||+++....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 399999999998888877642 224566776 44443332 25667888888888 665 599999999998753
Q ss_pred hH--------HHHHHHHHHHHhcCCCCceEEEEeee--eCCCC
Q 018565 262 DD--------ECIKILKNCKEAITKDKGKVIIVEAI--IEEDD 294 (354)
Q Consensus 262 ~~--------~~~~~L~~~~~~L~p~gG~lli~e~~--~~~~~ 294 (354)
.+ .+...+..++++|+| ||+.+.+... .+..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~-~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP-GGKYISVTLVQVVPQGR 170 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc-CCEEEEEEeeeeccCCC
Confidence 22 344568899999999 9998888774 44443
No 340
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=93.54 E-value=0.1 Score=36.65 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=41.1
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceee-ccCCCCCceEecCccc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKE-VPTSQGSMAFQQTPLS 100 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~-~~~~~~~~~y~~t~~~ 100 (354)
+.|+...+||+.++.++.-++.-+..|.++|+|+. ..+ .+.|..|..+
T Consensus 21 ~~PVgSk~ia~~l~~s~aTIRN~M~~Le~lGlve~~p~~---s~GriPT~~a 69 (78)
T PF03444_consen 21 GEPVGSKTIAEELGRSPATIRNEMADLEELGLVESQPHP---SGGRIPTDKA 69 (78)
T ss_pred CCCcCHHHHHHHHCCChHHHHHHHHHHHHCCCccCCCCC---CCCCCcCHHH
Confidence 47999999999999999999999999999999985 443 3677777665
No 341
>PRK06474 hypothetical protein; Provisional
Probab=93.37 E-value=0.1 Score=43.52 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=54.0
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCC---C-CceEecCccc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQ---G-SMAFQQTPLS 100 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~---~-~~~y~~t~~~ 100 (354)
..+|.-..++.|++.|...+++.|+.+|++.+ +++..-+.|.|+.|...|++....... + +..|++++.+
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~is~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~ 79 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDVPQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEED 79 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccce
Confidence 45666778888999997643459999999999 688899999999999999999765210 1 2347787755
No 342
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=0.027 Score=45.02 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=37.2
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.|+|++.+++.|+.-++-...++.+++.||| ||+|-|.-
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp-~G~LriAv 86 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP-GGKLRIAV 86 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc-CcEEEEEc
Confidence 48999999999999999999999999999999 99998864
No 343
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=93.15 E-value=0.1 Score=36.63 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
-+.|-++||..+|++...+.+.|+.|...|+++..+ +.+.....
T Consensus 27 ~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~-----~~i~I~d~ 70 (76)
T PF13545_consen 27 LPLTQEEIADMLGVSRETVSRILKRLKDEGIIEVKR-----GKIIILDP 70 (76)
T ss_dssp EESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET-----TEEEESSH
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcC-----CEEEECCH
Confidence 488999999999999999999999999999999887 66665543
No 344
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.10 E-value=0.067 Score=45.44 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--c-----ceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--E-----ADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~-----~D~i~~ 253 (354)
....|+|.-||.|...+.++.++| .++.+|+ |.-+..|+. .+||+|++||+++-+. . +|++++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 457899999999999998888866 5778887 777777764 5799999999988321 2 445555
Q ss_pred ccccccCChHHHHHHHHHHHHhcCC
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITK 278 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p 278 (354)
+-.-.. +.....-+-.+...++|
T Consensus 172 sppwgg--p~y~~~~~~DL~~~~~p 194 (263)
T KOG2730|consen 172 SPPWGG--PSYLRADVYDLETHLKP 194 (263)
T ss_pred CCCCCC--cchhhhhhhhhhhhcch
Confidence 432221 22334445556666666
No 345
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.09 E-value=0.61 Score=44.91 Aligned_cols=124 Identities=16% Similarity=0.298 Sum_probs=82.8
Q ss_pred ChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCcc-CCCceEEEecCCccHHHHHHHHH----CCCCeEEEeec-h
Q 018565 149 DVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVF-DGIETLVDIGGNDGTTLRTLTKA----FPRIRGINFDL-P 222 (354)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~ 222 (354)
..|+.+++++-.-..|++|.. ..+.+..+++. +....|.-+|+|.|-+..+..+. ...++.++++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 457777888876666666543 34555554322 23567888999999887765542 35667788887 7
Q ss_pred HHhhhccc------CCCeEEeecCCCC-CCC--cceEEEeccccccCChH-HHHHHHHHHHHhcCCCCc
Q 018565 223 HVVCVAEK------CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDD-ECIKILKNCKEAITKDKG 281 (354)
Q Consensus 223 ~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~-~~~~~L~~~~~~L~p~gG 281 (354)
+++...+. ..+|+++..|+.+ ..| .+|+++. ..|..|.|. --.+-|..+-+.||| +|
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkp-dg 472 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKP-DG 472 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCC-Cc
Confidence 76665543 7899999999998 443 3777654 445555443 235568888889999 75
No 346
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.87 E-value=2 Score=35.43 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=72.7
Q ss_pred EecCCccHHHHHHHHHCC---CCeEEEeec-hHHhhhccc---------CCCeEEee-cCCCC---CC----CcceEEEe
Q 018565 195 DIGGNDGTTLRTLTKAFP---RIRGINFDL-PHVVCVAEK---------CHGVEHVG-GDMFD---GV----PEADAAII 253 (354)
Q Consensus 195 DvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~v~~~~-~d~~~---~~----~~~D~i~~ 253 (354)
=||=|.-.++..|++.+. ++.+|.+|- .++...... ...+.+.. .|..+ .. ..||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777788899999877 444566665 333333321 33444433 25544 12 23999988
Q ss_pred ccccccC-----------ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCC
Q 018565 254 KWVLHDW-----------GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERS 322 (354)
Q Consensus 254 ~~~lh~~-----------~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t 322 (354)
++.---. ...-...+++.+.+.|++ +|.+.|.=..-.+ ++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~-~G~IhVTl~~~~p----------------------------y~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP-DGEIHVTLKDGQP----------------------------YD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCCCC----------------------------Cc
Confidence 7653320 122456788999999999 9999884321111 11
Q ss_pred HHHHHHHHHHcCCceeEEEEcC
Q 018565 323 LKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
.=.+..+.+++||...+..+..
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cccHHHHHHhcCCEEEEEecCC
Confidence 1123466778899988887763
No 347
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=92.81 E-value=0.17 Score=35.59 Aligned_cols=44 Identities=5% Similarity=0.191 Sum_probs=39.0
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|=|.|... +-.++.+||..++++++.++.+|..++.+|-+++..
T Consensus 7 lRd~l~~~-gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 7 VRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHHc-CcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 44667664 789999999999999999999999999999998875
No 348
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=92.79 E-value=0.16 Score=43.71 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=45.7
Q ss_pred hhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchh
Q 018565 43 AEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRL 103 (354)
Q Consensus 43 f~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l 103 (354)
...+.+. ..+|..+||+.+++++..+.+.|+.|...|++++.... ....+++|+.++.+
T Consensus 13 lg~l~~~-~~IS~~eLA~~L~iS~~Tvsr~Lk~LEe~GlI~R~~~~-r~~~v~LTekG~~l 71 (217)
T PRK14165 13 LGAVNNT-VKISSSEFANHTGTSSKTAARILKQLEDEGYITRTIVP-RGQLITITEKGLDV 71 (217)
T ss_pred HhccCCC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEcC-CceEEEECHHHHHH
Confidence 3345432 46899999999999999999999999999999887421 13568888887633
No 349
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.78 E-value=0.4 Score=43.01 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=56.0
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHhhhccc-----CCCeEEeecCCCC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIR-GINFDL-PHVVCVAEK-----CHGVEHVGGDMFD 243 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~ 243 (354)
..+.++.+. ..+....||.-=|.|..+..+++++|... .+++|. |.+++.+++ .+|+.++.++|.+
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 456666666 66779999999999999999999998665 999999 999998876 6799999998765
No 350
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=92.75 E-value=0.34 Score=40.16 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc--CCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 27 GFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL--KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 27 ~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~--g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
..|...+++..+.+.= +..+.++||+++ ++++.-++.-|+.|..+|++++.+ +|.|..|..+-
T Consensus 22 ~~W~~~~ir~l~~l~~--------~~~d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~----~g~y~~t~~~l 86 (171)
T PF14394_consen 22 SSWYHPAIRELLPLMP--------FAPDPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDG----DGKYVQTDKSL 86 (171)
T ss_pred hhhHHHHHHHHhhcCC--------CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECC----CCcEEEeccee
Confidence 3566666666554431 333999999999 999999999999999999999998 48999997653
No 351
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.66 E-value=0.32 Score=43.34 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=67.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHhhhccc----------CCCeEEeecCCCC---C--CCcce
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRI-RGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---G--VPEAD 249 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~--~~~~D 249 (354)
..++.+++-||+|.|......++. +.+ .+...|+ ..+++..+. .++|.+..||-+. . ..+||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999988876 544 3566776 555554432 6899999998765 2 34599
Q ss_pred EEEeccccccCChH--HHHHHHHHHHHhcCCCCceEEEEee
Q 018565 250 AAIIKWVLHDWGDD--ECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 250 ~i~~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+|+.-.-=-.-|.. --..++.-+.++||| +|.+.+...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~-dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG-DGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC-CcEEEEecc
Confidence 99874311000100 123456667889999 998887653
No 352
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=92.44 E-value=0.11 Score=50.64 Aligned_cols=68 Identities=21% Similarity=0.147 Sum_probs=54.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhcCCC
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMRHGE 108 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~~ 108 (354)
.+..|+..|... ++.|..+||+.+|+++..+.+.++-|.+.|+++..+.. ...|.+|+.|+ ++....|
T Consensus 7 ~e~~vL~~L~~~-~~~s~~eLA~~l~l~~~tVt~~i~~Le~kGlV~~~~~~--~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 7 NEKKVLKALKEL-KEATLEELAEKLGLPPEAVMRAAEWLEEKGLVKVEERV--EEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEEEeee--EEEEEECHHHHHHHHhcCH
Confidence 455666677653 68999999999999999999999999999999877521 24699999997 5555554
No 353
>PHA02943 hypothetical protein; Provisional
Probab=92.38 E-value=0.19 Score=39.94 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=40.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
..|++.|.. |+.|..|||+.+|++-...+-.|..|...|.+.+...
T Consensus 14 ~eILE~Lk~--G~~TtseIAkaLGlS~~qa~~~LyvLErEG~VkrV~~ 59 (165)
T PHA02943 14 IKTLRLLAD--GCKTTSRIANKLGVSHSMARNALYQLAKEGMVLKVEI 59 (165)
T ss_pred HHHHHHHhc--CCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEEEee
Confidence 346677743 7899999999999999999999999999999988863
No 354
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=92.19 E-value=0.24 Score=36.68 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=38.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
.++|..|||+.+|+++..+.|.|+.|...|++...+. -+.|..+
T Consensus 46 ~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~---~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGM---MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecC---CceeecC
Confidence 6999999999999999999999999999999987752 2566665
No 355
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=92.16 E-value=0.17 Score=41.39 Aligned_cols=46 Identities=11% Similarity=-0.028 Sum_probs=40.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..|+++|... +.+|-++||+.+|++...++++|..|...|++.+..
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGIKLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeee
Confidence 4577877753 799999999999999999999999999999996554
No 356
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.15 E-value=1.1 Score=41.57 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=59.4
Q ss_pred cCCCceEEEecCCccHHHHHHHH--------HC--------CCCeEEEeechHH-----hhhcc-------cCCC--eEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTK--------AF--------PRIRGINFDLPHV-----VCVAE-------KCHG--VEH 236 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~--------~~--------p~~~~~~~D~~~~-----~~~a~-------~~~~--v~~ 236 (354)
.+..-+|+|+||.+|..+..+.. ++ |.+++..-|+|.- ..... .... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45678999999999988876543 12 3457778887511 11111 1122 344
Q ss_pred eecCCCCC-CC--cceEEEeccccccCC-------h------------------H------------HHHHHHHHHHHhc
Q 018565 237 VGGDMFDG-VP--EADAAIIKWVLHDWG-------D------------------D------------ECIKILKNCKEAI 276 (354)
Q Consensus 237 ~~~d~~~~-~~--~~D~i~~~~~lh~~~-------~------------------~------------~~~~~L~~~~~~L 276 (354)
+++.|... +| +-|+++.++.||-++ + + +...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 67899983 55 389999999998542 1 1 1223333334558
Q ss_pred CCCCceEEEEeeeeCC
Q 018565 277 TKDKGKVIIVEAIIEE 292 (354)
Q Consensus 277 ~p~gG~lli~e~~~~~ 292 (354)
+| ||++++.-...++
T Consensus 174 v~-GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VP-GGRMVLTFLGRDE 188 (334)
T ss_dssp EE-EEEEEEEEEE-ST
T ss_pred cc-CcEEEEEEeeccc
Confidence 99 9999998887776
No 357
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=92.07 E-value=0.27 Score=37.84 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=45.4
Q ss_pred HHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 35 KCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 35 ~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..+...|.+.+.+. |.+|+.+++..+|++...+.++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGASRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeEeCC
Confidence 345667788888876 799999999999999999999999999999999887
No 358
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=92.06 E-value=1 Score=37.73 Aligned_cols=64 Identities=11% Similarity=-0.036 Sum_probs=49.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhhc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLMR 105 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~~ 105 (354)
..++..|... +++|..+||+.+++++..+.++++-|...|++.+....+ +. ...+|+.|+.+..
T Consensus 48 ~~iL~~L~~~-~~itq~eLa~~l~l~~sTvtr~l~rLE~kGlI~R~~~~~-DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 48 HHILWIAYHL-KGASISEIAKFGVMHVSTAFNFSKKLEERGYLTFSKKED-DKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCC-CCCeeEEEECHHHHHHHH
Confidence 4566677654 689999999999999999999999999999999774211 22 3778888765443
No 359
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.05 E-value=0.22 Score=46.44 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=41.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDM 241 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~ 241 (354)
..+++.++ ..+. ++||+=||.|.++..+++.. -++++++. +++++.|+. .++++|..++.
T Consensus 187 ~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 187 EQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 34444444 3333 79999999999999999874 47899998 888888774 57899987654
No 360
>PRK10870 transcriptional repressor MprA; Provisional
Probab=91.83 E-value=0.37 Score=40.15 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=48.9
Q ss_pred cChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 40 LGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 40 lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
+.++-.|... ++++|..+||+.+++++..+.++++-|...|++++....++ .-.+.+|+.|+.+..
T Consensus 58 ~~iL~~L~~~~~~~it~~eLa~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 58 FMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 4455556432 25789999999999999999999999999999998753211 113778888765443
No 361
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=91.78 E-value=1.4 Score=41.54 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=62.2
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHH----HHHHHHHC---CCCeEEEeechH-----Hhhhcc--------c-CCCe
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTT----LRTLTKAF---PRIRGINFDLPH-----VVCVAE--------K-CHGV 234 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~----~~~l~~~~---p~~~~~~~D~~~-----~~~~a~--------~-~~~v 234 (354)
.+.|++.+. -...-+|+|+|.|.|.- ...|+.+. |.+++|+++.|. .++.+. . +-..
T Consensus 99 NqaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f 176 (374)
T PF03514_consen 99 NQAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF 176 (374)
T ss_pred hHHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE
Confidence 356677766 45778999999999954 33444432 778899999732 122111 1 3344
Q ss_pred EEeec--CCCCCC-------Cc--ceEEEeccccccCChH------HHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 235 EHVGG--DMFDGV-------PE--ADAAIIKWVLHDWGDD------ECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 235 ~~~~~--d~~~~~-------~~--~D~i~~~~~lh~~~~~------~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
+|... +-.++. .+ +=+|-+..-||++.++ ....+|+.++ .|+| -.++++|.-.+
T Consensus 177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P--~vvv~~E~ea~ 247 (374)
T PF03514_consen 177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP--KVVVLVEQEAD 247 (374)
T ss_pred EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC--CEEEEEeecCC
Confidence 44442 211111 11 2234455667887532 2445777665 6898 35666665543
No 362
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=91.73 E-value=0.27 Score=38.87 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=35.5
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
|+.|.+|||.+.|++.+.+.--|.++++.|-|.+...
T Consensus 5 Ga~T~eELA~~FGvttRkvaStLa~~ta~Grl~Rv~q 41 (155)
T PF07789_consen 5 GAKTAEELAGKFGVTTRKVASTLAMVTATGRLIRVNQ 41 (155)
T ss_pred CcccHHHHHHHhCcchhhhHHHHHHHHhcceeEEecC
Confidence 8999999999999999999999999999999998875
No 363
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=91.52 E-value=0.17 Score=48.62 Aligned_cols=70 Identities=9% Similarity=0.095 Sum_probs=57.5
Q ss_pred HHHcChhhhhhhCCCC-CCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhcCCCc
Q 018565 37 AVELGIAEAVEEKGSP-ITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMRHGEN 109 (354)
Q Consensus 37 a~~lglf~~L~~~~~~-~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~~~ 109 (354)
+.+..|+..|... ++ .+.++||+.+|+++..+.+.+.-|.+.|+++..... ...|.+|+.|+ ++..+.|.
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~~~~~v~~~~~~L~~kg~v~~~~~~--~~~~~LT~eG~~~l~~G~PE 74 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGLDHNEVVGVIKSLHGFRYVDAQDIK--RETWVLTEEGKKYAAEGSPE 74 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCCCHHHHHHHHHHHHhCCCEEEEEEE--EEEEEECHHHHHHHHcCCHH
Confidence 4567788888764 44 799999999999999999999999999999766532 46799999996 77777664
No 364
>PRK10742 putative methyltransferase; Provisional
Probab=91.47 E-value=0.49 Score=41.47 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=49.1
Q ss_pred HHHhcCCCccCCCc--eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------------CCCeEEeec
Q 018565 178 AIIEGCPEVFDGIE--TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------------CHGVEHVGG 239 (354)
Q Consensus 178 ~~~~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~ 239 (354)
.+++.+. +.++. +|||.=+|+|..+..++.+ +++++.++. |.+....+. ..|++++.+
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3444444 44544 9999999999999999987 677999998 544333221 146777777
Q ss_pred CCCC---CCC-cceEEEec
Q 018565 240 DMFD---GVP-EADAAIIK 254 (354)
Q Consensus 240 d~~~---~~~-~~D~i~~~ 254 (354)
|..+ ..+ .||+|++-
T Consensus 153 da~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLD 171 (250)
T ss_pred cHHHHHhhCCCCCcEEEEC
Confidence 7665 122 47887763
No 365
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=91.31 E-value=0.15 Score=35.53 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=37.0
Q ss_pred hhhhhhhCCCCCCHHHHHhHc---CC--CcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASAL---KC--DPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~---g~--~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+|..... +.+++.++|+.+ +. ..+++..++.+|.++|++++.+
T Consensus 16 ~~~~~~~--~~i~l~~ia~~l~~~~~k~~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 16 LFESSPD--KSISLNEIADKLISENVKTQRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp HHHHCCC--TEEEHHHHHHHCHHHCCHHHCHHHHHHHHHHHHCTSEEEEE
T ss_pred HHHHCCC--CcccHHHHHHHHcccccccccchhhHHHHHHHHhCceeecC
Confidence 3444443 789999999999 99 8999999999999999999965
No 366
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.14 E-value=1.8 Score=38.90 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=74.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHhhhcccCCCeEEeecCCCC-C----CCcceEEEeccccccCCh--
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIR-GINFDL-PHVVCVAEKCHGVEHVGGDMFD-G----VPEADAAIIKWVLHDWGD-- 262 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~----~~~~D~i~~~~~lh~~~~-- 262 (354)
+++|+=||.|.+...+.+.. .+ +..+|. +..++..+..-.-.+..+|+.+ . .+++|+++.......++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999998888763 44 567887 6666655542111255667766 2 345899998766654431
Q ss_pred ------HHHHHHHH---HHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHc
Q 018565 263 ------DECIKILK---NCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 263 ------~~~~~~L~---~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~a 333 (354)
+....++. ++.+.++| +++++|.+..-... . ......++.+.|++.
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P---~~~v~ENV~g~~~~--------------------~--~~~~~~~i~~~l~~~ 134 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKP---KYFLLENVKGLLTH--------------------D--NGNTLKVILNTLEEL 134 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCC---CEEEEEcCcchhcc--------------------C--chHHHHHHHHHHHhC
Confidence 11122232 33344566 67888866432111 1 112467788889999
Q ss_pred CCceeEE
Q 018565 334 GFSRYNI 340 (354)
Q Consensus 334 Gf~~~~~ 340 (354)
||.+...
T Consensus 135 GY~~~~~ 141 (275)
T cd00315 135 GYNVYWK 141 (275)
T ss_pred CcEEEEE
Confidence 9987543
No 367
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=91.02 E-value=0.14 Score=37.48 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=42.7
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchh
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRL 103 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l 103 (354)
+++..+.-|.-.++++-......++.|+..|++...... ....|.+|+.|+-|
T Consensus 29 ~~~~~~Tri~y~aNlny~~~~~yi~~L~~~Gli~~~~~~-~~~~y~lT~KG~~f 81 (95)
T COG3432 29 EGGIGITRIIYGANLNYKRAQKYIEMLVEKGLIIKQDNG-RRKVYELTEKGKRF 81 (95)
T ss_pred CCCCCceeeeeecCcCHHHHHHHHHHHHhCCCEEeccCC-ccceEEEChhHHHH
Confidence 378899999999999999999999999999966666510 01169999999744
No 368
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=90.81 E-value=1.1 Score=40.37 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=69.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC----CCc-ceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG----VPE-ADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~~~-~D~i~~ 253 (354)
..++.+|||+-++.|.-+..+++... ...++..|+ ++-+...++ ..++.....|.... .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34678899999999999999999876 567889998 555554432 46677776666552 233 899887
Q ss_pred cc------ccccCCh-------HH-------HHHHHHHHHHhc----CCCCceEEEEee
Q 018565 254 KW------VLHDWGD-------DE-------CIKILKNCKEAI----TKDKGKVIIVEA 288 (354)
Q Consensus 254 ~~------~lh~~~~-------~~-------~~~~L~~~~~~L----~p~gG~lli~e~ 288 (354)
-- ++..-++ ++ =.++|+++.+.+ || ||+++-+.-
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~-gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP-GGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE-EEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC-CCeEEEEec
Confidence 21 2221111 11 147899999999 99 998887653
No 369
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=90.60 E-value=0.4 Score=42.30 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=50.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
.|-.++-.|-.. |+.|+.|||+.+|+|...+..+|+-|...|+++..... +..|+.-+....+..
T Consensus 17 yEa~vY~aLl~~-g~~tA~eis~~sgvP~~kvY~vl~sLe~kG~v~~~~g~--P~~y~av~p~~~i~~ 81 (247)
T COG1378 17 YEAKVYLALLCL-GEATAKEISEASGVPRPKVYDVLRSLEKKGLVEVIEGR--PKKYRAVPPEELIER 81 (247)
T ss_pred HHHHHHHHHHHh-CCccHHHHHHHcCCCchhHHHHHHHHHHCCCEEeeCCC--CceEEeCCHHHHHHH
Confidence 344445555443 79999999999999999999999999999999987421 567887776554443
No 370
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=90.51 E-value=0.3 Score=39.64 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=43.4
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+..|++.|..+ +..|..+||+++|+++..+.+=++-|...|++....
T Consensus 9 ~~D~~Il~~Lq~d-~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~~~~ 57 (153)
T PRK11179 9 NLDRGILEALMEN-ARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTR 57 (153)
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeEE
Confidence 3577888999874 799999999999999999999999999999998543
No 371
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=90.47 E-value=0.3 Score=40.23 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
-..+..|++.|.++ +..|..+||+++|+++..+.+=++-|...|+++..
T Consensus 13 D~~D~~IL~~Lq~d-~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 13 DRIDRNILNELQKD-GRISNVELSKRVGLSPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHHHHHhccC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34688899999874 79999999999999999999999999999999854
No 372
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=90.43 E-value=0.36 Score=41.03 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=34.0
Q ss_pred CCCCHHHHHhHcCCC-cccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCD-PSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~-~~~l~~lL~~L~~~g~l~~~~ 86 (354)
-|.|+.|||+.+|++ +..+.+.|+.|...|+++..+
T Consensus 24 ~~~~~~ela~~~~~~s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 24 YPPSIREIARAVGLRSPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCcHHHHHHHhCCCChHHHHHHHHHHHHCCCEecCC
Confidence 478999999999998 999999999999999999887
No 373
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=90.35 E-value=0.28 Score=34.50 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..+++.++.+ ..+++..+|+..+|.|++.+...++.|...|++.+..
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGIDPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCCCchHHHHHHHHHHHCCCEEEEE
Confidence 456677777753 2688999999999999999999999999999999886
No 374
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=90.27 E-value=0.3 Score=47.18 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=57.0
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhcCCCc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMRHGEN 109 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~~~ 109 (354)
..+..|+..|.+..+..+.++||+.+|+++..+.+.+.-|.+.|+++..... ...|.+|+.|+ ++..+.|.
T Consensus 6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~~~~~v~~~~~~L~~kg~v~~~~~~--~~~~~LT~eG~~~~~~G~PE 77 (494)
T PTZ00326 6 LEENTILSKLESENEIVNSLALAESLNIDHQKVVGAIKSLESANYITTEMKK--SNTWTLTEEGEDYLKNGSPE 77 (494)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHHHhCCCEEEEEEE--EEEEEECHHHHHHHHcCCHH
Confidence 3556677777652257899999999999999999999999999999766532 36799999996 77777764
No 375
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=90.21 E-value=0.4 Score=36.77 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=50.5
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
+..+..++..|... ++.+..+||+.+++++..+.++++-|...|++++....++ .-.+.+|+.++.+.
T Consensus 21 t~~q~~~L~~l~~~-~~~~~~~la~~l~i~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~ 90 (126)
T COG1846 21 TPPQYQVLLALYEA-GGITVKELAERLGLDRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELL 90 (126)
T ss_pred CHHHHHHHHHHHHh-CCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHH
Confidence 44566677777663 3444499999999999999999999999999988863211 12478888876433
No 376
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=89.96 E-value=0.28 Score=43.46 Aligned_cols=49 Identities=29% Similarity=0.360 Sum_probs=44.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
|..+.+.|.+.||.++-+||..++|++..-+.|.|+-|..+|++++...
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lglsktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGLSKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCCChHHHHHHHHHHHhCCceEEEEe
Confidence 4667888887778899999999999999999999999999999998864
No 377
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=89.73 E-value=0.39 Score=38.83 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=43.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..+++.|..+ ++.+..+||+++|+++..+.+-++-|...|++....
T Consensus 9 ~D~~IL~~L~~d-~r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQED-ARISNAELAERVGLSPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCceeeEE
Confidence 567788889874 789999999999999999999999999999998775
No 378
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=89.61 E-value=0.41 Score=40.62 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=33.8
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+.|++|+|+++|++..-.+|.|.+|++.|+++.+-
T Consensus 172 ~~~Taeela~~~giSRvTaRRYLeyl~~~~~l~a~i 207 (224)
T COG4565 172 QELTAEELAQALGISRVTARRYLEYLVSNGILEAEI 207 (224)
T ss_pred CccCHHHHHHHhCccHHHHHHHHHHHHhcCeeeEEe
Confidence 699999999999999999999999999999998663
No 379
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=89.47 E-value=0.51 Score=40.73 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHh
Q 018565 29 TNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLI 77 (354)
Q Consensus 29 ~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~ 77 (354)
.+..+|+.|+++|-||. + ..+++.|||+.+|+++..+...||-..
T Consensus 159 rQ~~vL~~A~~~GYFd~-P---R~~~l~dLA~~lGISkst~~ehLRrAe 203 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-P---RRVSLKDLAKELGISKSTLSEHLRRAE 203 (215)
T ss_pred HHHHHHHHHHHcCCCCC-C---ccCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46679999999999997 2 578999999999999988888777543
No 380
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=89.44 E-value=0.4 Score=36.88 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=34.4
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.++|++|||+.+.++++.++.+|+-|...|+++...
T Consensus 18 ~~vtl~elA~~l~cS~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFCSRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCCCHHHHHHHHHHHHHCCCeeeeC
Confidence 578999999999999999999999999999999886
No 381
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=89.37 E-value=0.34 Score=37.53 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=47.3
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
+.-+.-|++.|.+.+++.|+++|-+.+ +++..-+.|.|+.|...|++.+....++...|....
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~~ 74 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGDGESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeecC
Confidence 445667888887655799999998888 456678999999999999999886533344676664
No 382
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.36 E-value=4.3 Score=30.94 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=58.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCCC----CcceEEEeccccccCChHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGV----PEADAAIIKWVLHDWGDDE 264 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~----~~~D~i~~~~~lh~~~~~~ 264 (354)
..++|++||-|.=......++++ ++.++..|+.+- .+ ...++++..|+++|- .++|+|.... |+++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppE 82 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PPPE 82 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CCHH
Confidence 45699999988776655555554 478899998332 33 367889999999962 3589988755 4556
Q ss_pred HHHHHHHHHHhcCCCCceEEEE
Q 018565 265 CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 265 ~~~~L~~~~~~L~p~gG~lli~ 286 (354)
....+-.+.++++- .++|.
T Consensus 83 l~~~ildva~aVga---~l~I~ 101 (129)
T COG1255 83 LQSAILDVAKAVGA---PLYIK 101 (129)
T ss_pred HHHHHHHHHHhhCC---CEEEE
Confidence 66666667776643 45554
No 383
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=89.25 E-value=0.68 Score=35.89 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcC-CCcccHHHHHHHHhccCceeeccCCC--CCce
Q 018565 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALK-CDPSLLQRIMRFLIHLKFFKEVPTSQ--GSMA 93 (354)
Q Consensus 17 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g-~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~ 93 (354)
.....++.+.+=|..-+|+.+.+ |+.-..||-..++ +++.-|.+-|+.|...|++.+..-.. .--.
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~~-----------g~~RF~eL~r~i~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~Pprve 80 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLFD-----------GPKRFNELRRSIGGISPKMLSRRLKELEEDGLVERVVYPEEPPRVE 80 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHhc-----------CCCcHHHHHHHccccCHHHHHHHHHHHHHCCCEEeeecCCCCceeE
Confidence 46677788888888777766543 5788888888888 99999999999999999998875211 1124
Q ss_pred EecCcccchhhc
Q 018565 94 FQQTPLSRRLMR 105 (354)
Q Consensus 94 y~~t~~~~~l~~ 105 (354)
|++|+.++.|.+
T Consensus 81 Y~LT~~G~~L~~ 92 (120)
T COG1733 81 YRLTEKGRDLLP 92 (120)
T ss_pred EEEhhhHHHHHH
Confidence 999988876554
No 384
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=89.07 E-value=0.35 Score=33.91 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=26.6
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIH 78 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~ 78 (354)
++..|+. |.|+|+++||..+|.+.+.+...|..+-.
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~~~e~v~~~L~~~p~ 64 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGWPVEEVRAALAAMPD 64 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT--HHHHHHHHHH-TT
T ss_pred HHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 6778887 58999999999999999999888887753
No 385
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=88.61 E-value=0.81 Score=31.64 Aligned_cols=44 Identities=16% Similarity=0.035 Sum_probs=39.1
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|...++. +..|.+||-+++|++..-+...|.-|...|++++.-
T Consensus 9 ~IL~~ls~--~c~TLeeL~ekTgi~k~~LlV~LsrL~k~GiI~Rkw 52 (72)
T PF05584_consen 9 KILIILSK--RCCTLEELEEKTGISKNTLLVYLSRLAKRGIIERKW 52 (72)
T ss_pred HHHHHHHh--ccCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeee
Confidence 45566666 699999999999999999999999999999999874
No 386
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.59 E-value=0.89 Score=42.75 Aligned_cols=60 Identities=7% Similarity=-0.002 Sum_probs=51.5
Q ss_pred CCCeEEeecCCCC---CC--CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 231 CHGVEHVGGDMFD---GV--PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 231 ~~~v~~~~~d~~~---~~--~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
.++|+++.+++.+ .. +++|.+++....-.++++...+.++.+.+.++| ||++++=....+
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p-gaRV~~Rsa~~~ 338 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP-GARVLWRSAAVP 338 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC-CCEEEEeeCCCC
Confidence 6899999998877 23 349999999999989999999999999999999 999998665444
No 387
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=88.48 E-value=0.33 Score=36.63 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=33.6
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
-|++.|... +.++-++||+.+|+++.-++++|..|...|++....
T Consensus 17 ~Il~~L~~~-~~l~de~la~~~~l~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 17 RILDALLRK-GELTDEDLAKKLGLKPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHHH---B-HHHHHHTT-S-HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHHc-CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 357777643 789999999999999999999999999999996664
No 388
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=88.28 E-value=0.6 Score=44.88 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=41.5
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
|...|.. +|.|+.|||+.+|++...+++.|+.| .|+|...+.. -..+|+++...
T Consensus 5 ~~~~L~~--g~~~~~eL~~~l~~sq~~~s~~L~~L--~~~V~~~~~g-r~~~Y~l~~~~ 58 (442)
T PRK09775 5 LTTLLLQ--GPLSAAELAARLGVSQATLSRLLAAL--GDQVVRFGKA-RATRYALLRPL 58 (442)
T ss_pred HHHHHhc--CCCCHHHHHHHhCCCHHHHHHHHHHh--hcceeEeccC-ceEEEEecccc
Confidence 4456665 89999999999999999999999999 8888777630 01247776543
No 389
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=88.27 E-value=0.9 Score=40.17 Aligned_cols=209 Identities=11% Similarity=-0.011 Sum_probs=107.6
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhcCC-CcchHHHHHHhcCchhhhhhhhH
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHG-ENNMAAFILLESSPVMLAPWHSL 130 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l 130 (354)
.-+.-.|++...++-..+..+++.|...|++..+. +...+|+.++.++..- -.+..++-=-.+.. .--.....
T Consensus 34 ~~d~wkIvd~s~~plp~v~~i~~~l~~egiv~~~~-----g~v~~TekG~E~~e~~gi~~~~~~~C~~CeG-rgi~l~~f 107 (354)
T COG1568 34 TNDFWKIVDYSDLPLPLVASILEILEDEGIVKIEE-----GGVELTEKGEELAEELGIKKKYDYTCECCEG-RGISLQAF 107 (354)
T ss_pred CcchHhhhhhccCCchHHHHHHHHHHhcCcEEEec-----CcEeehhhhHHHHHHhCCCccccccccCcCC-ccccchhH
Confidence 33889999999999999999999999999999997 6699999997666521 11111110000000 00011112
Q ss_pred HHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH
Q 018565 131 GTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA 210 (354)
Q Consensus 131 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~ 210 (354)
.+.++. +-++....|+-...|.+..........+ +.=.+..+--.+..|+=+| -.-.++++++-.
T Consensus 108 ~dll~k-------------f~eiaK~RP~p~~~yDQgfvTpEttv~R-v~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt 172 (354)
T COG1568 108 KDLLEK-------------FREIAKDRPEPLHQYDQGFVTPETTVSR-VALMYSRGDLEGKEIFVVG-DDDLTSIALALT 172 (354)
T ss_pred HHHHHH-------------HHHHHhcCCCcchhcccccccccceeee-eeeeccccCcCCCeEEEEc-CchhhHHHHHhc
Confidence 222110 1111111111111122111110000000 0001111123457788888 444455554433
Q ss_pred CCCCeEEEeec-hHHhhhcc----c--CCCeEEeecCCCCCCCc-----ceEEEeccccccCChHHHHHHHHHHHHhcCC
Q 018565 211 FPRIRGINFDL-PHVVCVAE----K--CHGVEHVGGDMFDGVPE-----ADAAIIKWVLHDWGDDECIKILKNCKEAITK 278 (354)
Q Consensus 211 ~p~~~~~~~D~-~~~~~~a~----~--~~~v~~~~~d~~~~~~~-----~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 278 (354)
.---++.++|+ ...+.-.+ + -.+++.+..|..+|+|+ ||+++.--.= .-+....++.+=...||.
T Consensus 173 ~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe---Ti~alk~FlgRGI~tLkg 249 (354)
T COG1568 173 GMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE---TIKALKLFLGRGIATLKG 249 (354)
T ss_pred CCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh---hHHHHHHHHhccHHHhcC
Confidence 22236788888 44444332 2 46699999999998873 8998762210 112344555565677876
Q ss_pred CC---ceEEE
Q 018565 279 DK---GKVII 285 (354)
Q Consensus 279 ~g---G~lli 285 (354)
- |.+.+
T Consensus 250 -~~~aGyfgi 258 (354)
T COG1568 250 -EGCAGYFGI 258 (354)
T ss_pred -CCccceEee
Confidence 4 45444
No 390
>PRK05638 threonine synthase; Validated
Probab=88.24 E-value=0.66 Score=44.79 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=47.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcC--CCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALK--CDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g--~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
++.|+..|.+ ++.+.-||++.++ +++..+.+.|+.|...|+++........-.|++|+.++
T Consensus 373 r~~IL~~L~~--~~~~~~el~~~l~~~~s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~ 435 (442)
T PRK05638 373 KLEILKILSE--REMYGYEIWKALGKPLKYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGR 435 (442)
T ss_pred HHHHHHHHhh--CCccHHHHHHHHcccCCcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHH
Confidence 4556777775 6899999999998 88999999999999999997542110012499998875
No 391
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=88.19 E-value=0.52 Score=29.00 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHH
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFL 76 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L 76 (354)
++..|++.|... +..+..+||+.+|+++..+.+=++.|
T Consensus 4 ~D~~Il~~Lq~d-~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQED-GRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 456788888874 79999999999999998776655544
No 392
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.14 E-value=1.4 Score=40.69 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH----CC----CCeEEEeec-hHH
Q 018565 157 DAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA----FP----RIRGINFDL-PHV 224 (354)
Q Consensus 157 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p----~~~~~~~D~-~~~ 224 (354)
-|+..+.|-..+..+..-. ...+. .+.+.++|++|+|+|.++..+++. +| .+++..++. ++.
T Consensus 51 Apels~lFGella~~~~~~----wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 51 APELSQLFGELLAEQFLQL----WQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred chhHHHHHHHHHHHHHHHH----HHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 3556666666655432211 11122 345679999999999999988764 34 567888887 443
No 393
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.85 E-value=2.5 Score=36.47 Aligned_cols=93 Identities=22% Similarity=0.376 Sum_probs=64.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC----C-C-C---eEEEeechHHhhhcccCCCeEEeecCCCCC---------CC--
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF----P-R-I---RGINFDLPHVVCVAEKCHGVEHVGGDMFDG---------VP-- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~----p-~-~---~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~-- 246 (354)
+.+..+++|+=...|.++.-+.++. | . - .++.+|+..|... +.|.-..+|+.++ ++
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHHhCCC
Confidence 4577899999999999999988764 1 1 1 2788898666443 5566677888773 22
Q ss_pred cceEEEecc-----ccccCChH----HHHHHHHHHHHhcCCCCceEE
Q 018565 247 EADAAIIKW-----VLHDWGDD----ECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 247 ~~D~i~~~~-----~lh~~~~~----~~~~~L~~~~~~L~p~gG~ll 284 (354)
++|+|++-. -+|.++.= -....|.-...+||| ||.++
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~-Gg~FV 160 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP-GGSFV 160 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC-CCeee
Confidence 489999854 35765432 234556666788999 98765
No 394
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=87.82 E-value=0.44 Score=35.70 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHcChhhhhhh---CCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEE---KGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~---~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.-.||+.|.. .+.++++++|++++++++..++..|+.|...|++-..-
T Consensus 48 ~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTi 99 (102)
T PF08784_consen 48 LQDKVLNFIKQQPNSEEGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTI 99 (102)
T ss_dssp HHHHHHHHHHC----TTTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEeccc
Confidence 45556666654 13689999999999999999999999999999986553
No 395
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=87.79 E-value=0.69 Score=44.21 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=39.1
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
+.|.|.++|++.++++++.++++|+.|...|++.+.+ ++.|.+..
T Consensus 308 g~~~t~~~La~~l~~~~~~v~~iL~~L~~agLI~~~~----~g~~~l~r 352 (412)
T PRK04214 308 GKALDVDEIRRLEPMGYDELGELLCELARIGLLRRGE----RGQWVLAR 352 (412)
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCeEecC----CCceEecC
Confidence 4699999999999999999999999999999998765 36676553
No 396
>PF13730 HTH_36: Helix-turn-helix domain
Probab=87.58 E-value=0.53 Score=30.65 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=27.9
Q ss_pred CHHHHHhHcCCCcccHHHHHHHHhccCce
Q 018565 54 TLNELASALKCDPSLLQRIMRFLIHLKFF 82 (354)
Q Consensus 54 t~~elA~~~g~~~~~l~~lL~~L~~~g~l 82 (354)
|.+.||+.+|++.+-+.+.++.|...|++
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 89999999999999999999999999985
No 397
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.57 E-value=5.8 Score=37.42 Aligned_cols=99 Identities=22% Similarity=0.223 Sum_probs=61.7
Q ss_pred cCCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEee---cC-CCCC---C---CcceEEEec
Q 018565 187 FDGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVG---GD-MFDG---V---PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~d-~~~~---~---~~~D~i~~~ 254 (354)
..++.+||.+|||. |..+..+++.....++++++. ++..+.+++.....++. .+ +.+. . ..+|+++-+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678999999988 888889999875445888876 66666665421222222 11 1111 1 137877664
Q ss_pred c---------------ccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 255 W---------------VLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 255 ~---------------~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
- +++..++. ...+..+.+.|+| +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~-~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK-GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc-CCEEEEEcC
Confidence 2 11111222 3567888999999 999998754
No 398
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.39 E-value=1.3 Score=39.18 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=25.9
Q ss_pred CceEEEecCCccHHHHHHHHHCC--------CCeEEEeec-hHH
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFP--------RIRGINFDL-PHV 224 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~-~~~ 224 (354)
..+|+|+|+|+|.++..+++... .++++.++. |..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 47999999999999999887543 358999998 433
No 399
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=87.33 E-value=0.72 Score=37.93 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=40.0
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
-.|-.+||+.+|++..-+.|.+..|...+|+.+.. .|.|.++|.
T Consensus 75 ~~t~~~ia~~l~iS~~Tv~r~ik~L~e~~iI~k~~----~G~Y~iNP~ 118 (165)
T PF05732_consen 75 VATQKEIAEKLGISKPTVSRAIKELEEKNIIKKIR----NGAYMINPN 118 (165)
T ss_pred EeeHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEcc----CCeEEECcH
Confidence 34899999999999999999999999999999887 489999985
No 400
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=87.27 E-value=1.4 Score=29.71 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=32.1
Q ss_pred CCC-CHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPI-TLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~-t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+ |..+||+.+|++..-+++-|+.|.+.|+++...
T Consensus 22 ~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 22 DRLPSERELAERYGVSRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp SBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET
T ss_pred CEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEEC
Confidence 577 999999999999999999999999999998886
No 401
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=87.20 E-value=0.83 Score=40.47 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=41.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..|.+.|.+. +.+++.|||+.+|+++.-++|-|+.|...|++.+..
T Consensus 7 ~~~Il~~l~~~-~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 7 HQILLELLAQL-GFVTVEKVIERLGISPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 34477788764 799999999999999999999999999999998876
No 402
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=87.17 E-value=0.62 Score=31.42 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=34.3
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
|++.|.+. |+.|+.+|++.++++++.++.-|-.|...+++...
T Consensus 18 V~~~Ll~~-G~ltl~~i~~~t~l~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 18 VGEVLLSR-GRLTLREIVRRTGLSPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHHC--SEEHHHHHHHHT--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCeeee
Confidence 45555543 79999999999999999999999999999998764
No 403
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=87.07 E-value=0.98 Score=40.35 Aligned_cols=46 Identities=17% Similarity=0.118 Sum_probs=40.5
Q ss_pred CCCCHHHHHhHcC--CCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 51 SPITLNELASALK--CDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 51 ~~~t~~elA~~~g--~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+..++++||++++ ++..-++.-|+.|..+|++++.+ +|.|..|..+
T Consensus 136 ~~~~~~~ia~~l~p~is~~ev~~sL~~L~~~glikk~~----~g~y~~t~~~ 183 (271)
T TIGR02147 136 FADDPEELAKRCFPKISAEQVKESLDLLERLGLIKKNE----DGFYKQTDKA 183 (271)
T ss_pred CCCCHHHHHHHhCCCCCHHHHHHHHHHHHHCCCeeECC----CCcEEeecce
Confidence 3447899999999 78999999999999999999988 4899999764
No 404
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=87.06 E-value=0.85 Score=33.45 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=26.4
Q ss_pred cHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 68 LLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 68 ~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
++.=-+..|...|+++.... |.|++|+.|+.+..
T Consensus 56 ri~Wa~~~L~~aGli~~~~r----G~~~iT~~G~~~l~ 89 (92)
T PF14338_consen 56 RIRWARSYLKKAGLIERPKR----GIWRITEKGRKALA 89 (92)
T ss_pred hHHHHHHHHHHCCCccCCCC----CceEECHhHHHHHh
Confidence 34445788999999998774 89999999974443
No 405
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=86.80 E-value=0.82 Score=43.97 Aligned_cols=55 Identities=27% Similarity=0.308 Sum_probs=45.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD 243 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 243 (354)
++....++|+=||||.++.++++. -.+++++++ |+.++.|+. -.+.+|++|-..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 566789999999999999999886 457899998 888887764 5789999984444
No 406
>PRK00215 LexA repressor; Validated
Probab=86.68 E-value=0.95 Score=38.65 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=34.5
Q ss_pred CCCCCHHHHHhHcCC-CcccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKC-DPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~-~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.+.|..|||+.+|+ ++..+.++|+.|...|++++..
T Consensus 21 ~~~~s~~ela~~~~~~~~~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 21 GYPPSRREIADALGLRSPSAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCCHHHHHHHhCCCChHHHHHHHHHHHHCCCEEeCC
Confidence 358899999999999 9999999999999999998876
No 407
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=86.25 E-value=0.99 Score=41.51 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=44.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
...|++.|.+ +.+.+..+||+.+|+++..+.+.|+.|...|+.....+ ...|++.+..
T Consensus 6 ~~~il~~L~~-~~~~s~~~LA~~lgvsr~tV~~~l~~L~~~G~~i~~~~---~~Gy~L~~~~ 63 (319)
T PRK11886 6 MLQLLSLLAD-GDFHSGEQLGEELGISRAAIWKHIQTLEEWGLDIFSVK---GKGYRLAEPL 63 (319)
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCceEEec---CCeEEecCcc
Confidence 3456777776 36889999999999999999999999999999443332 2468876543
No 408
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.24 E-value=2.3 Score=33.05 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=45.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCC----CcceEEEeccccccCChH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGV----PEADAAIIKWVLHDWGDD 263 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~----~~~D~i~~~~~lh~~~~~ 263 (354)
+..++++||-|.=.-....++++ ++.+++.|+ +. .+ ...+.++..|+++|- .++|+|.+.+. +.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIRP-----PP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---cc--ccCcceeeecccCCCHHHhcCCcEEEEeCC-----Ch
Confidence 44699999988775555444443 488999998 44 22 367889999999963 35899988763 34
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEee
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+...-+.++.+.. |.-++|...
T Consensus 82 El~~~il~lA~~v---~adlii~pL 103 (127)
T PF03686_consen 82 ELQPPILELAKKV---GADLIIRPL 103 (127)
T ss_dssp TSHHHHHHHHHHH---T-EEEEE-B
T ss_pred HHhHHHHHHHHHh---CCCEEEECC
Confidence 4445555565544 445666443
No 409
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.75 E-value=0.8 Score=40.70 Aligned_cols=94 Identities=9% Similarity=-0.051 Sum_probs=52.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------------CCCeEEeec---CCCC---CC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------------CHGVEHVGG---DMFD---GV 245 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~---d~~~---~~ 245 (354)
...+|||+|||+|...+......- ..+..+|. .++++...- ..-...... |... ..
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 568999999999998888776532 56667776 445422110 111111122 1111 11
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 246 PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 246 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
-.||+|..+-+++..+...... .......+++ +|..++
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~-~~~r~~l~~~-D~~~~~ 232 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLY-LLHRPCLLKT-DGVFYV 232 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhH-hhhhhhcCCc-cchhhh
Confidence 2589999998888755443322 2233344455 676654
No 410
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=85.48 E-value=0.83 Score=37.27 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=34.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|+|++||++.+|++...++.-|+-|...|++.+.-
T Consensus 40 ~Pmtl~Ei~E~lg~Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 40 KPLTLDEIAEALGMSKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCccHHHHHHHHCCCcchHHHHHHHHHhcchHHhhh
Confidence 799999999999999999999999999999998764
No 411
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=85.47 E-value=1 Score=38.31 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=33.6
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++|-++||+.+|+++..+.|.|+.|...|++...+
T Consensus 168 ~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 168 KITRQEIGRIVGCSREMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 78899999999999999999999999999999887
No 412
>PRK09462 fur ferric uptake regulator; Provisional
Probab=84.89 E-value=1.7 Score=35.04 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHHHcChhhhhhhC-CCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 36 CAVELGIAEAVEEK-GSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 36 ~a~~lglf~~L~~~-~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+.-+.-|++.|... +++.|++||-+.+ +++..-+.|.|+.|+..|++.+....+|...|.++
T Consensus 16 T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~~~~~~~~y~~~ 83 (148)
T PRK09462 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELT 83 (148)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCcEEEEeC
Confidence 44566778888653 3699999998877 35678899999999999999876532223456543
No 413
>PRK12423 LexA repressor; Provisional
Probab=84.68 E-value=0.93 Score=38.68 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCCHHHHHhHcCC-CcccHHHHHHHHhccCceeecc
Q 018565 52 PITLNELASALKC-DPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 52 ~~t~~elA~~~g~-~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+-|..|||+.+|+ ++..++..|+.|...|+++...
T Consensus 25 ~Ps~~eia~~~g~~s~~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 25 PPSLAEIAQAFGFASRSVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred CCCHHHHHHHhCCCChHHHHHHHHHHHHCCCEEecC
Confidence 5699999999995 8889999999999999999876
No 414
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=84.43 E-value=1.2 Score=39.44 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=42.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|.+.|.+. +.+++.|||+.+++++.-++|-|..|...|++.+..
T Consensus 6 R~~~Il~~l~~~-~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 6 RHDAIIELVKQQ-GYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHHHc-CCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec
Confidence 345577788764 789999999999999999999999999999998886
No 415
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=84.17 E-value=1.6 Score=38.37 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=40.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..|.+.|.+. +.++++|||+.+|+++.-++|-|..|...|.+.+..
T Consensus 7 ~~Il~~l~~~-~~~~~~eLa~~l~VS~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 7 QAIVDLLLNH-TSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 4467777764 799999999999999999999999999999998765
No 416
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=83.94 E-value=2.2 Score=37.93 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=47.1
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCCCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCc
Q 018565 203 TLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKG 281 (354)
Q Consensus 203 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG 281 (354)
++..|.++.+..+++++|. +..+..+.+..-+.-...+ .+.+.++|+|+++- |......+++++...+++ |.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~-~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP-GA 73 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T-TS
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC-Cc
Confidence 3567788888999999999 7777777543333333322 22345689998865 455678888888888887 64
No 417
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=83.65 E-value=1.4 Score=36.87 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|+|-++||+.+|+++..+.|.|+.|...|+++..+
T Consensus 143 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 143 RLSHQAIAEAIGSTRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC
Confidence 78999999999999999999999999999999887
No 418
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=83.33 E-value=1.7 Score=41.01 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CC-Cc--ceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GV-PE--ADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~-~~--~D~i~~~~~ 256 (354)
+...+||||.|+|.++...+++..+ .++.++. ..|.+.+++ .++|.++.---.+ .+ |. +|+++..-+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4578999999999999988888644 4788887 777777764 5677776532222 22 22 565544333
Q ss_pred cccCChHHHHHHHHHHHHhc
Q 018565 257 LHDWGDDECIKILKNCKEAI 276 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L 276 (354)
.-.+--+-+..-++++.+.|
T Consensus 145 dtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhccccchhHHHHHHHh
Confidence 22222222333455555544
No 419
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=83.23 E-value=1.3 Score=38.58 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=37.7
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
|+|-++||+.+|+++..+.|.|+.|...|+++..+ +.+.+..
T Consensus 184 ~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~~~~-----~~i~i~d 225 (235)
T PRK11161 184 TMTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKG-----KYITIEN 225 (235)
T ss_pred cccHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC-----CEEEEcC
Confidence 68999999999999999999999999999999987 5665543
No 420
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=83.18 E-value=3.9 Score=31.69 Aligned_cols=75 Identities=16% Similarity=0.083 Sum_probs=51.5
Q ss_pred HHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHhc
Q 018565 57 ELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLA 136 (354)
Q Consensus 57 elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 136 (354)
.||+.++++-+-+--+++++..+|+++..+ |...+|+.|+.++..+......++.-.. ....+....+...+++
T Consensus 2 ~La~~l~~eiDdL~p~~eAaelLgf~~~~~-----Gdi~LT~~G~~f~~a~~~~rK~if~~~l-~~~~Pl~~~I~~~L~~ 75 (120)
T PF09821_consen 2 QLADELHLEIDDLLPIVEAAELLGFAEVEE-----GDIRLTPLGRRFAEADIDERKEIFREQL-LRHVPLAAHIRRVLRE 75 (120)
T ss_pred chHHHhCCcHHHHHHHHHHHHHcCCeeecC-----CcEEeccchHHHHHCChHHHHHHHHHHH-HhcCCHHHHHHHHHHh
Confidence 478999999999999999999999999987 8999999998666544322222222211 1123334455656654
Q ss_pred C
Q 018565 137 N 137 (354)
Q Consensus 137 ~ 137 (354)
.
T Consensus 76 ~ 76 (120)
T PF09821_consen 76 R 76 (120)
T ss_pred C
Confidence 3
No 421
>PF13518 HTH_28: Helix-turn-helix domain
Probab=83.08 E-value=1.4 Score=28.04 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=27.0
Q ss_pred CCHHHHHhHcCCCcccHHHHHHHHhccCc
Q 018565 53 ITLNELASALKCDPSLLQRIMRFLIHLKF 81 (354)
Q Consensus 53 ~t~~elA~~~g~~~~~l~~lL~~L~~~g~ 81 (354)
.|..++|..+|+++..+.+|++.....|+
T Consensus 13 ~s~~~~a~~~gis~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 13 ESVREIAREFGISRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCHHHHHHHHCCCHhHHHHHHHHHHhcCH
Confidence 49999999999999999999999998885
No 422
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=82.69 E-value=1.7 Score=29.44 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=35.6
Q ss_pred CCCCHHHHHhHcCCCcc-cHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 51 SPITLNELASALKCDPS-LLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
.+++.+++.++.|.+-. .....|..+...|+++.++ +++++|+.|.
T Consensus 19 ~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll~~~~-----~~l~lT~~G~ 65 (66)
T PF06969_consen 19 EGIDLSEFEQRFGIDFAEEFQKELEELQEDGLLEIDG-----GRLRLTEKGR 65 (66)
T ss_dssp SEEEHHHHHHHTT--THHH-HHHHHHHHHTTSEEE-S-----SEEEE-TTTG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEeC-----CEEEECcccC
Confidence 58899999999999843 4477899999999999998 8999998874
No 423
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.64 E-value=7.4 Score=29.42 Aligned_cols=81 Identities=25% Similarity=0.263 Sum_probs=48.0
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC-------CCcceEEEeccccccCChHHHHH
Q 018565 198 GNDGTTLRTLTKAF--PRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG-------VPEADAAIIKWVLHDWGDDECIK 267 (354)
Q Consensus 198 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~~lh~~~~~~~~~ 267 (354)
||.|.++..+++.. .+..++++|. ++.++.+++ ..+.++.||..++ ..++|.+++..- ++.....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 45566666665532 3457999998 777777765 3388999999883 124777666431 2444444
Q ss_pred HHHHHHHhcCCCCceEEE
Q 018565 268 ILKNCKEAITKDKGKVII 285 (354)
Q Consensus 268 ~L~~~~~~L~p~gG~lli 285 (354)
+...+ +.+.| ..+++.
T Consensus 79 ~~~~~-r~~~~-~~~ii~ 94 (116)
T PF02254_consen 79 IALLA-RELNP-DIRIIA 94 (116)
T ss_dssp HHHHH-HHHTT-TSEEEE
T ss_pred HHHHH-HHHCC-CCeEEE
Confidence 44444 44555 566654
No 424
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=82.62 E-value=1.6 Score=37.76 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=39.2
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|++.+.++..+.|.+|||+++++++.-+++.+..|+..|++..+-
T Consensus 166 ~Vl~~~~~g~~g~s~~eIa~~l~iS~~Tv~~~~~~~~~~~~~~~~~ 211 (225)
T PRK10046 166 AVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEI 211 (225)
T ss_pred HHHHHHHcCCCCcCHHHHHHHhCccHHHHHHHHHHHHhCCeEEEEe
Confidence 5677776521268999999999999999999999999999998774
No 425
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=82.26 E-value=1.6 Score=38.77 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=42.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..|.+.|.+. +.+++.|||+.+++++.-++|=|+.|...|++.+..
T Consensus 7 ~~~Il~~L~~~-~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 7 QAAILEYLQKQ-GKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHHc-CCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45677888774 789999999999999999999999999999998876
No 426
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=82.22 E-value=1.6 Score=39.04 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=42.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
....|.+.|... +.+++.|||+.+|+++.-++|=|..|...|++.+..
T Consensus 18 R~~~Il~~L~~~-~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 18 RREQIIQRLRQQ-GSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHHc-CCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 445677888764 689999999999999999999999999999999886
No 427
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=82.21 E-value=1.2 Score=27.17 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=21.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHh
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLI 77 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~ 77 (354)
.+.|+++||+.+|+++..+.|..+...
T Consensus 7 ~~~~l~~iA~~~g~S~~~f~r~Fk~~~ 33 (42)
T PF00165_consen 7 QKLTLEDIAEQAGFSPSYFSRLFKKET 33 (42)
T ss_dssp SS--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 589999999999999999999887654
No 428
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=82.21 E-value=2.7 Score=29.87 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=42.7
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
+|..+.. .+.|-++||+.+|++...+...++.|...|+=..... ...|++.....
T Consensus 11 ll~~~~~--~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~---~kGY~L~~~~~ 65 (79)
T COG1654 11 LLLLLTG--NFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVR---GKGYLLPQLPD 65 (79)
T ss_pred HHHHcCC--CcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecC---CCceeccCccc
Confidence 3444443 6999999999999999999999999999998666653 24687775543
No 429
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=82.12 E-value=4.4 Score=32.23 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=46.3
Q ss_pred eEEEeec-hHHhhhccc-------CCCeEEeecCCCC---CCC--cceEEEeccccccCC---------hHHHHHHHHHH
Q 018565 215 RGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD---GVP--EADAAIIKWVLHDWG---------DDECIKILKNC 272 (354)
Q Consensus 215 ~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~---~~~--~~D~i~~~~~lh~~~---------~~~~~~~L~~~ 272 (354)
++.++|+ +++++..++ .+|++++..+=.. -++ +.|+++++- -++| .+.-...++++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 4789999 777777664 4689998764433 233 478877652 2222 23457889999
Q ss_pred HHhcCCCCceEEEEe
Q 018565 273 KEAITKDKGKVIIVE 287 (354)
Q Consensus 273 ~~~L~p~gG~lli~e 287 (354)
.+.|+| ||.+.|+-
T Consensus 79 l~lL~~-gG~i~iv~ 92 (140)
T PF06962_consen 79 LELLKP-GGIITIVV 92 (140)
T ss_dssp HHHEEE-EEEEEEEE
T ss_pred HHhhcc-CCEEEEEE
Confidence 999999 99888754
No 430
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=82.02 E-value=1.8 Score=37.50 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=40.8
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|++.|...++-++..+||+++|+++..+++-++.|.+.|+++...
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGVSRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 5788887533689999999999999999999999999999998776
No 431
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=81.98 E-value=0.94 Score=28.75 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=23.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKF 81 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~ 81 (354)
+..+...+.+ +.|..+||+.+|+++.-+.+|++.....|+
T Consensus 7 R~~ii~l~~~---G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 7 RAQIIRLLRE---GWSIREIAKRLGVSRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ---HHHHHHH---T--HHHHHHHHTS-HHHHHHHHT-------
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCcCHHHHHHHHHHcccccc
Confidence 4445555553 899999999999999999999988776664
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=81.98 E-value=2.1 Score=34.39 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=47.7
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
--+..|++.|...+++.|+++|=..+ ++++.-+.|.|+.|...|++.+-...++..+|.++..
T Consensus 21 ~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~~~~~~~~y~~~~~ 88 (145)
T COG0735 21 PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLEFEGGKTRYELNSE 88 (145)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEEeCCCEEEEecCCC
Confidence 35678889998766789999996665 4677889999999999999998875333334655544
No 433
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=81.90 E-value=15 Score=30.95 Aligned_cols=103 Identities=11% Similarity=0.129 Sum_probs=68.8
Q ss_pred CCceEEEecCCccHHHHHHHH----HCCCCeEEEeech--HHhhhcccCCCeEEeecCCCCC-C--------Ccc-eEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTK----AFPRIRGINFDLP--HVVCVAEKCHGVEHVGGDMFDG-V--------PEA-DAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~----~~p~~~~~~~D~~--~~~~~a~~~~~v~~~~~d~~~~-~--------~~~-D~i~ 252 (354)
.+..|+++|.-.|..+..++. .....+++++|+. ..-..+.+.++|.|+.++-.+| . ..| -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 468999999777766655543 3344678888872 2223444478999999988774 1 123 3445
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCC
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD 294 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~ 294 (354)
+-..-|+ -+.+.+.|+-..++|.. |-++++.|....+-.
T Consensus 149 ilDsdHs--~~hvLAel~~~~pllsa-G~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHS--MEHVLAELKLLAPLLSA-GDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCch--HHHHHHHHHHhhhHhhc-CceEEEecccccCCC
Confidence 5555564 55677788888888887 888888777765543
No 434
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=81.84 E-value=2.3 Score=30.77 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=34.8
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc---CCCCCceEecCccc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP---TSQGSMAFQQTPLS 100 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~---~~~~~~~y~~t~~~ 100 (354)
|.-++.. +..++..|-+.+|++.+-+.+.|.+|..+|+-..-. ..+..|.|+++.-|
T Consensus 13 la~li~~--~~~nvp~L~~~TGmPrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~~GyY~i~~WG 72 (90)
T PF09904_consen 13 LAYLIDS--GERNVPALMEATGMPRRTIQDTIKALPELGIECEFVQDGERNNAGYYRISDWG 72 (90)
T ss_dssp HHHHHHH--S-B-HHHHHHHH---HHHHHHHHHGGGGGT-EEEEE--TTS-S--EEEEEE-T
T ss_pred HHHHHhc--CCccHHHHHHHhCCCHhHHHHHHHHhhcCCeEEEEEecCccCCCCcEEeeecC
Confidence 3334444 445999999999999999999999999999876522 11235778887654
No 435
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.71 E-value=6 Score=36.87 Aligned_cols=93 Identities=24% Similarity=0.201 Sum_probs=64.0
Q ss_pred ceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccC---CCeEEeecC-C----CC-CCC-cceEEEeccccc
Q 018565 191 ETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKC---HGVEHVGGD-M----FD-GVP-EADAAIIKWVLH 258 (354)
Q Consensus 191 ~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d-~----~~-~~~-~~D~i~~~~~lh 258 (354)
.+|+=+|||. |.++..+++.+...++++.|. ++-++.|++. +.+.....+ . .+ .-+ .+|+++-+.-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 3999999995 666677888888889999999 8888888761 212211121 0 01 112 4898877554
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
....+..+.++++| ||++.++-...++
T Consensus 248 ------~~~~~~~ai~~~r~-gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRP-GGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcC-CCEEEEEeccCCc
Confidence 12468888889999 9999998876554
No 436
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=81.49 E-value=16 Score=31.95 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=66.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-----hHHhhhcccCCCeEEeecCCCCCCC------cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-----PHVVCVAEKCHGVEHVGGDMFDGVP------EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~~~~------~~D~i~~~ 254 (354)
..+..+||-+|.++|.....+..- .|.--+..++. -+.+..|++..+|-.+.-|...|.. =.|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 578899999999999988777663 35444555554 2455666666777777778777632 2466654
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
.+-+ ++++.-+.-++.--||+ ||.++|.-...
T Consensus 233 Dvaq---pdq~RivaLNA~~FLk~-gGhfvisikan 264 (317)
T KOG1596|consen 233 DVAQ---PDQARIVALNAQYFLKN-GGHFVISIKAN 264 (317)
T ss_pred cCCC---chhhhhhhhhhhhhhcc-CCeEEEEEecc
Confidence 2222 34555666678888999 99998865433
No 437
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=81.36 E-value=6.9 Score=35.22 Aligned_cols=82 Identities=22% Similarity=0.128 Sum_probs=52.1
Q ss_pred ceEEEecCC--ccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEee-cCC-CCCCCcceEEEeccccccCChHHH
Q 018565 191 ETLVDIGGN--DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVG-GDM-FDGVPEADAAIIKWVLHDWGDDEC 265 (354)
Q Consensus 191 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-~d~-~~~~~~~D~i~~~~~lh~~~~~~~ 265 (354)
.+|+=+|.| -|.++..+.++.+...+++.|. ......+.. -.+.... .+. ......+|+|+.+- |-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-lgv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-LGVIDELTVAGLAEAAAEADLVIVAV-----PIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-cCcccccccchhhhhcccCCEEEEec-----cHHHH
Confidence 466777766 3455666666767777888887 555555543 2222222 233 22455689998865 44567
Q ss_pred HHHHHHHHHhcCC
Q 018565 266 IKILKNCKEAITK 278 (354)
Q Consensus 266 ~~~L~~~~~~L~p 278 (354)
.++++++...|+|
T Consensus 78 ~~~l~~l~~~l~~ 90 (279)
T COG0287 78 EEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHhcccCCC
Confidence 7899999999998
No 438
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.26 E-value=8.8 Score=37.69 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=60.0
Q ss_pred CCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC--------------C-------
Q 018565 188 DGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD--------------G------- 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~--------------~------- 244 (354)
.++.+|+=+|||. |..+...++.. +.+++++|. ++..+.++.. ..++...|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 3578999999996 45566666665 458999999 8888877751 12221111100 1
Q ss_pred -----CCcceEEEeccccccCChHHHHHH-HHHHHHhcCCCCceEEEEee
Q 018565 245 -----VPEADAAIIKWVLHDWGDDECIKI-LKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 245 -----~~~~D~i~~~~~lh~~~~~~~~~~-L~~~~~~L~p~gG~lli~e~ 288 (354)
..++|+++...-.. ......+ .+...+.+|| ||.++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~p---g~~aP~lit~~~v~~mkp-GgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIP---GKPAPKLITAEMVASMKP-GSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCC---cccCcchHHHHHHHhcCC-CCEEEEEcc
Confidence 13589988765432 2112244 5889999999 998877643
No 439
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=81.12 E-value=1.1 Score=27.97 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=17.9
Q ss_pred CCCHHHHHhHcCCCcccHHHHHH
Q 018565 52 PITLNELASALKCDPSLLQRIMR 74 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~ 74 (354)
+.|+.+||+.+|++..-+.|+|+
T Consensus 21 G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 21 GMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp T--HHHHHHHTTS-HHHHHHHHC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHh
Confidence 49999999999999999988874
No 440
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=81.07 E-value=0.88 Score=31.70 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=30.8
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceee
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKE 84 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~ 84 (354)
...|..|||+.+|+++..++.++..+...|.+.+
T Consensus 31 eGlS~kEIAe~LGIS~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 31 AGKTASEIAEELGRTEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhcCcccchHHH
Confidence 5899999999999999999999999888887654
No 441
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=81.06 E-value=5.1 Score=38.29 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=56.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCC--CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC---CCC---cceEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFP--RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD---GVP---EADAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~---~~~---~~D~i~ 252 (354)
.+..+.|+|.|.|.-...+....+ .-.++.+|. ..+...... ...+.+....|+. |.+ .||+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 345778888776644443333333 335778887 444443322 1122222212322 322 399999
Q ss_pred eccccccCChH-HHHHHHHHHH-HhcCCCCceEEEEee
Q 018565 253 IKWVLHDWGDD-ECIKILKNCK-EAITKDKGKVIIVEA 288 (354)
Q Consensus 253 ~~~~lh~~~~~-~~~~~L~~~~-~~L~p~gG~lli~e~ 288 (354)
+.+.+|+++.. ....+.+++. +..++ |+.++++|.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~-g~~lViIe~ 316 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRS-GYFLVIIEK 316 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCC-CceEEEEec
Confidence 99999998644 3344455544 45677 999999885
No 442
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=80.99 E-value=2 Score=36.34 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=36.7
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
++|-++||+.+|+++..+.|.|.-|...|++...+ ++....+
T Consensus 149 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~-----~~i~I~d 190 (202)
T PRK13918 149 YATHDELAAAVGSVRETVTKVIGELSREGYIRSGY-----GKIQLLD 190 (202)
T ss_pred cCCHHHHHHHhCccHHHHHHHHHHHHHCCCEEcCC-----CEEEEEC
Confidence 78999999999999999999999999999999665 5555443
No 443
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=80.83 E-value=1.9 Score=38.15 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=42.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
...|++.|.+. |.++++|||+.+|+++.-++|=|+.|...|++.+..
T Consensus 7 ~~~Il~~l~~~-g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 7 HQKILELLKEK-GKVSVEELAELFGVSEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHHHc-CcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEEEEe
Confidence 34577888775 799999999999999999999999999999999976
No 444
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=80.48 E-value=2.3 Score=32.51 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=34.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
.|.|++|||..++++-.-++-++--|...|++....+
T Consensus 54 ~~~SVAEiAA~L~lPlgVvrVLvsDL~~~G~v~v~~p 90 (114)
T PF05331_consen 54 RPLSVAEIAARLGLPLGVVRVLVSDLADAGLVRVRAP 90 (114)
T ss_pred CCccHHHHHHhhCCCchhhhhhHHHHHhCCCEEEeCC
Confidence 5999999999999999999999999999999988763
No 445
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.47 E-value=14 Score=33.80 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=65.5
Q ss_pred cCCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhccc-C-CCeEEeecCC-----CC----CCC--cceEE
Q 018565 187 FDGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-C-HGVEHVGGDM-----FD----GVP--EADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~-~~v~~~~~d~-----~~----~~~--~~D~i 251 (354)
...+.++|=+|+|. |..+...++.+-..++++.|+ ++-++.|++ . ..+......- .+ -.. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 56789999999995 666667778888889999999 888998887 1 1121111111 00 011 27888
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
+-+..++ ..++.+..++++ ||.++++++-.+.
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~-gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS-GGTVVLVGMGAEE 278 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc-CCEEEEeccCCCc
Confidence 7777665 345566778898 9998888865443
No 446
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=80.14 E-value=26 Score=28.68 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=63.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCC--CC-----cceEEEeccccccCC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG--VP-----EADAAIIKWVLHDWG 261 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~--~~-----~~D~i~~~~~lh~~~ 261 (354)
+..+|+=|||=+-.....- ...++.++..+|...--... .+. .|+--|+.+| +| .+|+|++--.+ ++
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~--~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF--l~ 98 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQF--GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF--LS 98 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhc--CCc-ceEECCCCChhhhhhhcCCCceEEEECCCC--CC
Confidence 5689999999887665443 35678889999985444333 223 5666777764 33 48999986555 45
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+-..++.+.++.++++ ++++++..
T Consensus 99 ~ec~~k~a~ti~~L~k~-~~kii~~T 123 (162)
T PF10237_consen 99 EECLTKTAETIRLLLKP-GGKIILCT 123 (162)
T ss_pred HHHHHHHHHHHHHHhCc-cceEEEec
Confidence 55555767777777788 88988755
No 447
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=80.03 E-value=3 Score=36.28 Aligned_cols=76 Identities=9% Similarity=0.170 Sum_probs=43.2
Q ss_pred HHHhcCCCccCCC--ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc-------c--------CCCeEEeec
Q 018565 178 AIIEGCPEVFDGI--ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE-------K--------CHGVEHVGG 239 (354)
Q Consensus 178 ~~~~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~--------~~~v~~~~~ 239 (354)
.+++... +.+. .+|||.=+|-|.-+.-++.. +.++++++. |-+....+ . ..||+++.+
T Consensus 64 ~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3444444 4443 49999999999999888765 678999998 43322221 1 258999999
Q ss_pred CCCC--CC--CcceEEEecccc
Q 018565 240 DMFD--GV--PEADAAIIKWVL 257 (354)
Q Consensus 240 d~~~--~~--~~~D~i~~~~~l 257 (354)
|..+ .. .++|+|++--.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S-
T ss_pred CHHHHHhhcCCCCCEEEECCCC
Confidence 9887 32 359999885444
No 448
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=79.75 E-value=2.4 Score=36.81 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=36.9
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
+.|-++||+.+|+++..+.|.|+.|...|+++..+. +++...+
T Consensus 179 ~lt~~~IA~~lGisretlsR~L~~L~~~GlI~~~~~----~~i~I~D 221 (230)
T PRK09391 179 PMSRRDIADYLGLTIETVSRALSQLQDRGLIGLSGA----RQIELRN 221 (230)
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCC----ceEEEcC
Confidence 689999999999999999999999999999987641 4565544
No 449
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=79.67 E-value=8.5 Score=28.43 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=48.4
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccC-------CHHHHH
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKER-------SLKEWD 327 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~-------t~~e~~ 327 (354)
.+|-|++.++..++|+++...-+ |.+++. . .+... .+.-+........+..| ..+++.
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~---~~~ifT-f--AP~T~---------~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~ 67 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR---GSLIFT-F--APRTP---------LLALMHAIGKLFPRPDRSPRIYPHREEDLR 67 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc---CcEEEE-E--CCCCH---------HHHHHHHHhccCCCCCCCCcEEEeCHHHHH
Confidence 34556788999999999987643 466652 1 11111 11111111110112222 589999
Q ss_pred HHHHHcCCceeEEEEcCCc--ee-EEEEeC
Q 018565 328 YVLRQAGFSRYNITSIHAV--QS-LIEAFP 354 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~~~~--~~-~i~~~~ 354 (354)
+.++++||++.+...+... .| ++|++|
T Consensus 68 ~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 68 RALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 9999999999988776432 22 555543
No 450
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.62 E-value=12 Score=34.39 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=71.0
Q ss_pred EEEecCCccHHHHHHHHHCCCCeE-EEeec-hHHhhhccc-CCCeEEeecCCCC-C---CCcceEEEeccccccCCh---
Q 018565 193 LVDIGGNDGTTLRTLTKAFPRIRG-INFDL-PHVVCVAEK-CHGVEHVGGDMFD-G---VPEADAAIIKWVLHDWGD--- 262 (354)
Q Consensus 193 vLDvG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~---~~~~D~i~~~~~lh~~~~--- 262 (354)
|+|+=||.|.+...+.+. +.++ ..+|+ +..++..+. .+. .+..+|+.+ . .++.|+++.......|+.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 589999999999998876 4554 45777 555554443 222 445577766 2 456899988766555431
Q ss_pred -----HHHHHHHHHHH---HhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 263 -----DECIKILKNCK---EAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 263 -----~~~~~~L~~~~---~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
+....++.... +.++| +++++|.+..-... ..+ ....++.+.|++.|
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P---~~~v~ENV~~l~~~--------------------~~~--~~~~~i~~~l~~~G 132 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKP---KFFLLENVKGLVSH--------------------DKG--RTFKVIIETLEELG 132 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCC---CEEEeeccHHHHhc--------------------ccc--hHHHHHHHHHHhCC
Confidence 11223333333 34566 67777765321110 111 24677888889999
Q ss_pred CceeE
Q 018565 335 FSRYN 339 (354)
Q Consensus 335 f~~~~ 339 (354)
|.+..
T Consensus 133 Y~v~~ 137 (315)
T TIGR00675 133 YKVYY 137 (315)
T ss_pred CEEEE
Confidence 97754
No 451
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.49 E-value=4.4 Score=28.42 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=38.8
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC---CCCceEecCccc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS---QGSMAFQQTPLS 100 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~---~~~~~y~~t~~~ 100 (354)
+...++.+|-+++|++.+-+...+.+|-.+|+.-+-..+ |+.|.|.+.+-+
T Consensus 20 ~e~~nVP~lm~~TGwPRRT~QDvikAlpglgi~l~FvQ~G~Rnn~GyYql~dWG 73 (95)
T COG4519 20 GETANVPELMAATGWPRRTAQDVIKALPGLGIVLEFVQEGARNNQGYYQLRDWG 73 (95)
T ss_pred cccCChHHHHHHcCCchhHHHHHHHhCcCCCeEEEeeecccccCCCceEeeecc
Confidence 357899999999999999999999999999987544322 345566665443
No 452
>PRK09954 putative kinase; Provisional
Probab=79.22 E-value=2.1 Score=40.05 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=39.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCcee
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFK 83 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~ 83 (354)
+..|++.|.++ +.+|..+||+.+|+++..+.+.|+-|...|++.
T Consensus 5 ~~~il~~l~~~-~~~s~~~la~~l~~s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRN-PLIQQNEIADILQISRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCcC
Confidence 44578888775 699999999999999999999999999999984
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=79.07 E-value=3.8 Score=33.88 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=42.1
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeecc
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.-+.-|++.|...+++.|+++|.+.+ +++..-+.|.|+.|...|++.+..
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 446677788887655799999998887 356788999999999999998876
No 454
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.98 E-value=11 Score=34.43 Aligned_cols=89 Identities=13% Similarity=0.016 Sum_probs=49.2
Q ss_pred CceEEEecCCc-cH-HHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCCCcceEEEeccccccCChHHHH
Q 018565 190 IETLVDIGGND-GT-TLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECI 266 (354)
Q Consensus 190 ~~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~ 266 (354)
..+|.=||+|. |. ++..+.+.....+++++|. ++..+.+++..-......+..+...++|+|+++-. .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 35788899875 32 3333444322247888898 55555554321111111121112346899887653 33445
Q ss_pred HHHHHHHHhcCCCCceEE
Q 018565 267 KILKNCKEAITKDKGKVI 284 (354)
Q Consensus 267 ~~L~~~~~~L~p~gG~ll 284 (354)
.+++.+...++| +..+.
T Consensus 81 ~v~~~l~~~l~~-~~iv~ 97 (307)
T PRK07502 81 AVAAEIAPHLKP-GAIVT 97 (307)
T ss_pred HHHHHHHhhCCC-CCEEE
Confidence 677888888888 65443
No 455
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=78.75 E-value=3.3 Score=32.60 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=38.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHc----CCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASAL----KCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~----g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|+.|+..|=.. ++.|+.+|.+.+ +++..-+..+|+-|...|+|....
T Consensus 5 ~E~~VM~vlW~~-~~~t~~eI~~~l~~~~~~~~tTv~T~L~rL~~KG~v~~~k 56 (130)
T TIGR02698 5 AEWEVMRVVWTL-GETTSRDIIRILAEKKDWSDSTIKTLLGRLVDKGCLTTEK 56 (130)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHhhccCCcHHHHHHHHHHHHHCCceeeec
Confidence 455666666443 689999966665 788899999999999999998764
No 456
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=78.64 E-value=2.3 Score=31.20 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=35.1
Q ss_pred HHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHh
Q 018565 35 KCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLI 77 (354)
Q Consensus 35 ~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~ 77 (354)
..+.+.||+..|.. ++.|-.|||+.+|++...+.|+=+.|.
T Consensus 40 ~l~~R~~i~~~Ll~--~~~tQrEIa~~lGiS~atIsR~sn~lk 80 (94)
T TIGR01321 40 DLGDRIRIVNELLN--GNMSQREIASKLGVSIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHhCCChhhhhHHHhhcc
Confidence 34578999998876 799999999999999999888777665
No 457
>PF11972 HTH_13: HTH DNA binding domain; InterPro: IPR021068 The proteins in this entry have not been characterised. They contain a C-terminal helix-turn-helix DNA binding domain.
Probab=78.63 E-value=3.2 Score=26.96 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=32.7
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEe
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQ 95 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~ 95 (354)
+.|.|-.. .=+|+.-+|+.+|+++....++++-| |.-+..+. ++|+
T Consensus 4 Lidll~~~-P~Vsa~mva~~L~vT~~~A~~li~eL---g~rEiTGr----~R~R 49 (54)
T PF11972_consen 4 LIDLLLSR-PLVSAPMVAKELGVTPQAAQRLIAEL---GLREITGR----GRYR 49 (54)
T ss_pred HHHHHHhC-ccccHHHHHHHhCCCHHHHHHHHHHh---hceeecCC----cccc
Confidence 55666552 34499999999999999999987554 44444553 6665
No 458
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=78.58 E-value=2.3 Score=36.82 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=36.4
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+.|-++||+.+|+++..+.|.|.-|...|+++..+ +++.+.
T Consensus 169 ~~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~~~-----~~i~I~ 209 (226)
T PRK10402 169 HEKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKKSK-----RGYLIK 209 (226)
T ss_pred cchHHHHHHHHCCcHHHHHHHHHHHHHCCCEEeeC-----CEEEEe
Confidence 56889999999999999999999999999999887 566554
No 459
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=78.50 E-value=3.6 Score=34.08 Aligned_cols=58 Identities=10% Similarity=0.045 Sum_probs=46.4
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
++..|++.|...|...|+-+||.++|++..-+.|.|.-|...|.|...+.. +.+|...
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i~k~~vNr~LY~L~~~~~v~~~~~~--pP~W~~~ 62 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGISKHEANRCLYRLLESDAVSCEDGC--PPLWSVE 62 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCccHHHHHHHHHHHhhcCcEecCCCC--CCccccc
Confidence 456788999886546999999999999999999999999999999776521 3454433
No 460
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=78.47 E-value=1.6 Score=39.76 Aligned_cols=37 Identities=30% Similarity=0.686 Sum_probs=34.1
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHH-HHhccCceeecc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMR-FLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~-~L~~~g~l~~~~ 86 (354)
+++.+++++|+.+|.++..+++.++ .|+..|++...+
T Consensus 253 ~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 253 GGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCC
Confidence 3689999999999999999999999 799999998666
No 461
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=78.44 E-value=3 Score=34.68 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=31.8
Q ss_pred CHHHHHhHc-CCCcccHHHHHHHHhccCceeeccC
Q 018565 54 TLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 54 t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
|-..||+.+ |+++..++|.|+.|+..|++...+.
T Consensus 72 SN~~La~r~~G~s~~tlrR~l~~LveaGLI~rrDS 106 (177)
T PF03428_consen 72 SNAQLAERLNGMSERTLRRHLARLVEAGLIVRRDS 106 (177)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHCCCeeeccC
Confidence 779999999 9999999999999999999998763
No 462
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=78.40 E-value=6.1 Score=27.39 Aligned_cols=54 Identities=13% Similarity=0.181 Sum_probs=38.2
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHH--hccCceeeccCCCC-CceEec
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFL--IHLKFFKEVPTSQG-SMAFQQ 96 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L--~~~g~l~~~~~~~~-~~~y~~ 96 (354)
|.+.|... ++.|+++|++.+|+-+.-++-.|--+ -..|+-......+| ...|++
T Consensus 15 li~mL~rp-~GATi~ei~~atGWq~HTvRgalsg~~kKklGl~i~s~k~~g~~r~YrI 71 (72)
T PF11994_consen 15 LIAMLRRP-EGATIAEICEATGWQPHTVRGALSGLLKKKLGLTITSEKVDGGGRRYRI 71 (72)
T ss_pred HHHHHcCC-CCCCHHHHHHhhCCchhhHHHHHHHHHHHhcCcEEEeeecCCCeeeEee
Confidence 45556543 78999999999999999888888877 66676544432222 445765
No 463
>PRK10736 hypothetical protein; Provisional
Probab=78.16 E-value=3.2 Score=38.91 Aligned_cols=51 Identities=10% Similarity=-0.000 Sum_probs=43.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEec
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQ 96 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 96 (354)
..|++.|.. .|.++++|++++|++...+...|-.|.-.|+++... ++.|+.
T Consensus 311 ~~v~~~l~~--~~~~iD~L~~~~~l~~~~v~~~L~~LEl~G~v~~~~----g~~~~~ 361 (374)
T PRK10736 311 PELLANVGD--EVTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVP----GGYVRL 361 (374)
T ss_pred HHHHHhcCC--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEcC----CcEEEE
Confidence 467777765 689999999999999999999999999999999887 355544
No 464
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=78.07 E-value=0.92 Score=31.02 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=39.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHh--HcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 38 VELGIAEAVEEKGSPITLNELAS--ALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~--~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
.+-.|++.|...+ +.++..||. .++++..-+.+.|..|...|.+.+.+.. +..|+++.
T Consensus 5 ~ee~Il~~L~~~g-~~~a~~ia~~~~L~~~kk~VN~~LY~L~k~g~v~k~~~~--PP~W~l~~ 64 (66)
T PF02295_consen 5 LEEKILDFLKELG-GSTATAIAKALGLSVPKKEVNRVLYRLEKQGKVCKEGGT--PPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHT-SSEEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEECSS--STEEEE-H
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHhCcchhHHHHHHHHHHHHHCCCEeeCCCC--CCceEecc
Confidence 4566777777653 555555555 5555589999999999999999887632 45677664
No 465
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=77.86 E-value=6.1 Score=35.10 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-----CCCeEEEeech
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-----PRIRGINFDLP 222 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~ 222 (354)
+.+...++|+|||.|.++..+.+.. +...++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4577899999999999999999887 56789999973
No 466
>PHA02591 hypothetical protein; Provisional
Probab=77.72 E-value=2.5 Score=29.52 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=26.5
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHH
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRF 75 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~ 75 (354)
|...|.+ .+.|.++||+.||++...+++.|+-
T Consensus 51 vA~eL~e--qGlSqeqIA~~LGVsqetVrKYL~~ 82 (83)
T PHA02591 51 VTHELAR--KGFTVEKIASLLGVSVRKVRRYLES 82 (83)
T ss_pred HHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHhc
Confidence 4445665 6999999999999999999998863
No 467
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=77.39 E-value=6.1 Score=33.15 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=53.5
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------------------CCCeEEeecCCCCCCCcceEE
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------------------CHGVEHVGGDMFDGVPEADAA 251 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------~~~v~~~~~d~~~~~~~~D~i 251 (354)
+|.=+|.|.=.+..+++-...+.+++++|. ++.++..++ ..++.+. .|+.+...+.|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 566677775444333333334689999999 776666553 2233322 1111113347887
Q ss_pred Eeccc-ccc----CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCC
Q 018565 252 IIKWV-LHD----WGDDECIKILKNCKEAITKDKGKVIIVEAIIEED 293 (354)
Q Consensus 252 ~~~~~-lh~----~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~ 293 (354)
+++-- -.+ .+-..+.++++.+.+.+++ |.++|.+...+..
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~--~~lvV~~STvppG 125 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP--GDLVVIESTVPPG 125 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS--CEEEEESSSSSTT
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh--cceEEEccEEEEe
Confidence 66432 211 1223478889999999997 7888887766543
No 468
>PRK13239 alkylmercury lyase; Provisional
Probab=77.02 E-value=2.2 Score=36.25 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=31.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIH 78 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~ 78 (354)
-.-|+..|++ |.|.|+++||+.+|.+.+.++..|+.|..
T Consensus 24 ~~~llr~la~-G~pvt~~~lA~~~~~~~~~v~~~L~~l~~ 62 (206)
T PRK13239 24 LVPLLRLLAK-GRPVSVTTLAAALGWPVEEVEAVLEAMPD 62 (206)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 3345666775 58999999999999999999988888753
No 469
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=76.83 E-value=4.2 Score=34.18 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=36.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.++..++-. +|+|..+|++..|++. ..+++-|...|++.+.+
T Consensus 93 LEtLaiIay~-qPiTr~eI~~irGv~~---~~ii~~L~~~gLI~e~g 135 (188)
T PRK00135 93 LEVLAIIAYK-QPITRIEIDEIRGVNS---DGALQTLLAKGLIKEVG 135 (188)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCCH---HHHHHHHHHCCCeEEcC
Confidence 4567777654 7999999999999997 78899999999998754
No 470
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=76.80 E-value=8.4 Score=31.10 Aligned_cols=76 Identities=14% Similarity=0.287 Sum_probs=55.2
Q ss_pred HhhhHHHHHHHHHHHcCh-------hhhhhhCCCCCCHHHHHhHcCCC-cccHHHHHHHHhccCceeeccCCCCCceEec
Q 018565 25 VFGFTNMAVVKCAVELGI-------AEAVEEKGSPITLNELASALKCD-PSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQ 96 (354)
Q Consensus 25 ~~~~~~~~~l~~a~~lgl-------f~~L~~~~~~~t~~elA~~~g~~-~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 96 (354)
.++-|...|+.++.+.++ +-.+.-.+.|.++.+|++.++.+ -..+..-||-|...|+++..+.. -+-.|..
T Consensus 64 Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~eDth~itYslrKL~k~gLit~t~~g-kevTy~v 142 (199)
T COG5631 64 AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNREDTHNITYSLRKLLKGGLITRTGSG-KEVTYEV 142 (199)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHhccceecCCCC-ceEEEEE
Confidence 345577788888877654 22333335799999999999995 46778889999999999988730 1224888
Q ss_pred Ccccc
Q 018565 97 TPLSR 101 (354)
Q Consensus 97 t~~~~ 101 (354)
|+.+.
T Consensus 143 Ta~G~ 147 (199)
T COG5631 143 TALGH 147 (199)
T ss_pred ecchH
Confidence 87764
No 471
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=76.80 E-value=4.2 Score=31.53 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=41.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
-|-|.++||..++-+...++.-|.++...|+++..+ ++.|.++...+
T Consensus 52 ipy~~e~LA~~~~~~~~~V~~AL~~f~k~glIe~~e----d~~i~i~~~~~ 98 (121)
T PF09681_consen 52 IPYTAEMLALEFDRPVDTVRLALAVFQKLGLIEIDE----DGVIYIPNWEK 98 (121)
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec----CCeEEeecHHH
Confidence 599999999999999999999999999999999987 47887765443
No 472
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=75.91 E-value=3.6 Score=35.14 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=34.4
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|..++-.+||+.+|++..-++.-|+.|...|+|+...
T Consensus 32 G~~L~e~~La~~lgVSRtpVReAL~~L~~eGlv~~~~ 68 (212)
T TIGR03338 32 GAKLNESDIAARLGVSRGPVREAFRALEEAGLVRNEK 68 (212)
T ss_pred CCEecHHHHHHHhCCChHHHHHHHHHHHHCCCEEEec
Confidence 4677999999999999999999999999999998876
No 473
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=75.70 E-value=4.3 Score=35.03 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=38.8
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
|..++..+||+.+|++..-++.-|+.|...|+|+.... ..+...+.+
T Consensus 28 G~~L~e~eLae~lgVSRtpVREAL~~L~~eGlv~~~~~----~G~~V~~~~ 74 (224)
T PRK11534 28 DEKLRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQ----KGYRVASMS 74 (224)
T ss_pred CCcCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEEeCC----CceEeCCCC
Confidence 46778999999999999999999999999999988763 345555443
No 474
>PHA01634 hypothetical protein
Probab=74.80 E-value=11 Score=29.37 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=30.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 230 (354)
.+.+|+|||++.|..++.++-+.. -.++.++. +......++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHH
Confidence 468999999999999999887633 25677776 655555543
No 475
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=74.67 E-value=3.4 Score=29.80 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=33.1
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.-+|...||++++++-...++.|+.|...|++....
T Consensus 40 K~ITps~lserlkI~~SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 40 KIVTPYTLASKYGIKISVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred cEEcHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEe
Confidence 467999999999999999999999999999997664
No 476
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=74.33 E-value=2.5 Score=28.05 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=31.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLI 77 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~ 77 (354)
-++.|++.|-+. +..|..+||+.+|++++-+..-+..|-
T Consensus 6 rq~~Ll~~L~~~-~~~~~~ela~~l~~S~rti~~~i~~L~ 44 (59)
T PF08280_consen 6 RQLKLLELLLKN-KWITLKELAKKLNISERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHHH-TSBBHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCcHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356677788663 799999999999999999998888776
No 477
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=74.17 E-value=6.2 Score=34.79 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=50.0
Q ss_pred CCceEEEecCCccHHHHHH---HHHC--CCCeEEEeec----hHHhh-----------------------hcc----c--
Q 018565 189 GIETLVDIGGNDGTTLRTL---TKAF--PRIRGINFDL----PHVVC-----------------------VAE----K-- 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l---~~~~--p~~~~~~~D~----~~~~~-----------------------~a~----~-- 230 (354)
-++.|+|+||=.|..+..+ ++.+ ++-++.++|- |+.-. ..+ +
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 3589999999999766544 3333 4556788874 22111 000 0
Q ss_pred --CCCeEEeecCCCCCCCc--ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 231 --CHGVEHVGGDMFDGVPE--ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 231 --~~~v~~~~~d~~~~~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
.++++++.|.|.+..|. .+-|-+.++=-++=+ .....|..++..|.| ||.|++
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYe-sT~~aLe~lyprl~~-GGiIi~ 210 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYE-STKDALEFLYPRLSP-GGIIIF 210 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHH-HHHHHHHHHGGGEEE-EEEEEE
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccchH-HHHHHHHHHHhhcCC-CeEEEE
Confidence 36899999998764332 121211111111212 356889999999999 887766
No 478
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=73.63 E-value=1.9 Score=36.18 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=41.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..|.+.|... +.+++++||+.+|+++.-++|=|+.|...|.+.+..
T Consensus 9 ~~~Il~~l~~~-~~~~~~~La~~~~vS~~TiRRDl~~L~~~g~~~r~~ 55 (185)
T PRK04424 9 QKALQELIEEN-PFITDEELAEKFGVSIQTIRLDRMELGIPELRERIK 55 (185)
T ss_pred HHHHHHHHHHC-CCEEHHHHHHHHCcCHHHHHHHHHHHhcchHHHHHH
Confidence 34567777764 789999999999999999999999999999998775
No 479
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=73.62 E-value=5.3 Score=28.99 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 30 NMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 30 ~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
...++....+..++..|... .+.++.+|+..++++...+.+.|..|...|++....
T Consensus 18 ~~~~l~~~~r~~il~~l~~~-~~~~~~~l~~~~~~~~~~v~~hL~~L~~~glv~~~~ 73 (110)
T COG0640 18 ILKALADPTRLEILSLLAEG-GELTVGELAEALGLSQSTVSHHLKVLREAGLVELRR 73 (110)
T ss_pred HHHHhCCHHHHHHHHHHHhc-CCccHHHHHHHHCCChhHHHHHHHHHHHCCCeEEEe
Confidence 34455555778888888762 488999999999999999999999999999998865
No 480
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=73.18 E-value=3.3 Score=25.63 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=17.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHH
Q 018565 51 SPITLNELASALKCDPSLLQRIMR 74 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~ 74 (354)
.+.|..+||+.+|.++.-+.+.|+
T Consensus 19 ~G~s~~~IA~~lg~s~sTV~relk 42 (44)
T PF13936_consen 19 QGMSIREIAKRLGRSRSTVSRELK 42 (44)
T ss_dssp S---HHHHHHHTT--HHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCcHHHHHHHh
Confidence 579999999999999999988875
No 481
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=73.10 E-value=3.8 Score=33.01 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=35.1
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCce
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFF 82 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l 82 (354)
-|++.|... +.+|-++||+.+|++...++++|..|..-+++
T Consensus 5 ~v~d~L~~~-~~~~dedLa~~l~i~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 5 LVLDALMRN-GCVTEEDLAELLGIKQKQLRKILYLLYDEKLI 45 (147)
T ss_pred eehHHHHhc-CCcCHHHHHHHhCCCHHHHHHHHHHHHhhhcc
Confidence 467777664 68999999999999999999999999994443
No 482
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=73.08 E-value=3.5 Score=27.52 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.9
Q ss_pred CCCCCHHHHHhHcCCCcccHHHH
Q 018565 50 GSPITLNELASALKCDPSLLQRI 72 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~l 72 (354)
+|.++..+||+.+|+++.-++.|
T Consensus 20 ~g~i~lkdIA~~Lgvs~~tIr~W 42 (60)
T PF10668_consen 20 NGKIKLKDIAEKLGVSESTIRKW 42 (60)
T ss_pred CCCccHHHHHHHHCCCHHHHHHH
Confidence 47999999999999999988876
No 483
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=72.88 E-value=18 Score=32.37 Aligned_cols=79 Identities=11% Similarity=-0.029 Sum_probs=46.7
Q ss_pred eEEEecCCc--cHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCCCcceEEEeccccccCChHHHHHH
Q 018565 192 TLVDIGGND--GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKI 268 (354)
Q Consensus 192 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~ 268 (354)
+|.=||+|. |.++..+.++ +.+++++|. ++..+.+.....+.....+. +...++|+|+++- |.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHHH
Confidence 456677763 3344444443 568899998 66666654322222111111 1234589988864 45667788
Q ss_pred HHHHHHhcCC
Q 018565 269 LKNCKEAITK 278 (354)
Q Consensus 269 L~~~~~~L~p 278 (354)
++++...++|
T Consensus 74 ~~~l~~~l~~ 83 (279)
T PRK07417 74 SEQLIPALPP 83 (279)
T ss_pred HHHHHHhCCC
Confidence 8999888887
No 484
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=72.73 E-value=6.1 Score=35.41 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=50.9
Q ss_pred hHHhhhccc-CCCeEEeecCCCC-----CCCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 222 PHVVCVAEK-CHGVEHVGGDMFD-----GVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 222 ~~~~~~a~~-~~~v~~~~~d~~~-----~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.+.+.++. ..||.++.+|+.+ |.++.|-|++..+-..+++.+...++.++++-+.| |.++++-.
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~-gA~VifRt 366 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA-GARVIFRT 366 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC-CcEEEEec
Confidence 344444443 6789999999876 33458999998887777899999999999999999 88888743
No 485
>PF14557 AphA_like: Putative AphA-like transcriptional regulator
Probab=72.47 E-value=6.9 Score=31.87 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=51.7
Q ss_pred HHHHHcChhhhhhhCCCCCCHHHHHhHc--------CCCcccHHHHHHHHhccCceeeccCCC--CCceEecCcccc
Q 018565 35 KCAVELGIAEAVEEKGSPITLNELASAL--------KCDPSLLQRIMRFLIHLKFFKEVPTSQ--GSMAFQQTPLSR 101 (354)
Q Consensus 35 ~~a~~lglf~~L~~~~~~~t~~elA~~~--------g~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~~~ 101 (354)
+-+++++++-.|++ +|.+.+++|+.+ |-+.+.+.--++.|...|+++-.+... .+..|.+|+.++
T Consensus 9 re~v~L~vLG~la~--~p~~~~~va~~vrh~~sr~~gps~~Ll~~sie~Lr~eGlve~~~g~g~e~~a~l~iT~~Gr 83 (175)
T PF14557_consen 9 REAVRLCVLGTLAR--GPRRYEEVAGAVRHFASRIWGPSLDLLGTSIELLREEGLVEAVDGEGMEDNALLAITDAGR 83 (175)
T ss_pred HHHHHHHHHHHHhc--CCcCHHHHHHHHHHhccccccCchhhhhhHHHHHHhcCCcccccccCCCccceeeeCcchH
Confidence 56788888888887 899999999986 557789999999999999999884211 134688888763
No 486
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=72.13 E-value=5.8 Score=26.26 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.2
Q ss_pred CCCCHHHHHhHc---CCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASAL---KCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~---g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+++-+||-+++ ++++.....+|+.|++.|.+..++
T Consensus 16 ~G~~keeLrsrl~~~~l~~k~~~~ll~~l~~~g~l~~~g 54 (59)
T PF09106_consen 16 PGMPKEELRSRLFKPRLPPKLFNALLEALVAEGRLKVEG 54 (59)
T ss_dssp S-EEHHHHHHHCST-TS-HCCHHHHHHHHHHTTSEEEES
T ss_pred cCcCHHHHHHHHhhccCCHHHHHHHHHHHHHCCCeeeEC
Confidence 477889999888 789999999999999999999887
No 487
>PTZ00357 methyltransferase; Provisional
Probab=72.01 E-value=25 Score=35.62 Aligned_cols=128 Identities=17% Similarity=0.173 Sum_probs=72.3
Q ss_pred ChhHHHhhChHHHHHHHHHhhhchhhhHH------------HH------HhcCCCcc--CCCceEEEecCCccHHHHHHH
Q 018565 149 DVWSYAAADAAHSKLINDAMACDTRLAMR------------AI------IEGCPEVF--DGIETLVDIGGNDGTTLRTLT 208 (354)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~------------~~------~~~~~~~~--~~~~~vLDvG~G~G~~~~~l~ 208 (354)
..|+.+++++-.-..|.+++...-..... .+ +...+... .....|+-+|+|-|-+....+
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraL 719 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECL 719 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHH
Confidence 56888888888777788777543211100 00 00111000 122468999999998887766
Q ss_pred HHCC----CCeEEEeec-hHHhhh--cc---c----------CCCeEEeecCCCC-CCC-------------cceEEEec
Q 018565 209 KAFP----RIRGINFDL-PHVVCV--AE---K----------CHGVEHVGGDMFD-GVP-------------EADAAIIK 254 (354)
Q Consensus 209 ~~~p----~~~~~~~D~-~~~~~~--a~---~----------~~~v~~~~~d~~~-~~~-------------~~D~i~~~ 254 (354)
+... .+++.+++- |+.+.. .+ . +++|+++..|+.+ ..+ .+|+++.
T Consensus 720 rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS- 798 (1072)
T PTZ00357 720 HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS- 798 (1072)
T ss_pred HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH-
Confidence 6432 455677776 342211 11 1 3469999999987 322 3676654
Q ss_pred cccccCChHH-HHHHHHHHHHhcC
Q 018565 255 WVLHDWGDDE-CIKILKNCKEAIT 277 (354)
Q Consensus 255 ~~lh~~~~~~-~~~~L~~~~~~L~ 277 (354)
..|..|.|++ ..+-|..+.+.||
T Consensus 799 ELLGSFGDNELSPECLDGaQrfLK 822 (1072)
T PTZ00357 799 ELLGSLGDNELSPECLEAFHAQLE 822 (1072)
T ss_pred hhhcccccccCCHHHHHHHHHhhh
Confidence 4555565443 3455666666665
No 488
>PF09202 Rio2_N: Rio2, N-terminal; InterPro: IPR015285 This N-terminal domain is found in RIO2 kinases, and is structurally homologous to the winged helix (wHTH) domain. It adopts a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A.
Probab=72.00 E-value=7.2 Score=27.93 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
.|+|.|-=++ .-+..+.|++.+|+++..+...|.-|...+++..... +-..|++|-.|
T Consensus 13 ~aiE~gmk~h-----E~VP~~~I~~~s~l~~~~~~~~L~~L~~~kLv~~~~~--~Y~GYrLT~~G 70 (82)
T PF09202_consen 13 RAIEMGMKNH-----EWVPLELIEKISGLSEGEVEKRLKRLVKLKLVSRRNK--PYDGYRLTFLG 70 (82)
T ss_dssp HHHHTTTTT------SSEEHHHHHHHHT--HHHHHHHHHHHHHTTSEEEE-S--SS-EEEE-HHH
T ss_pred HHHHHcccCC-----ccCCHHHHHHHhCcCHHHHHHHHHHHHhcCCccccCC--CcceEEEeecc
Confidence 4555554332 4778999999999999999999999999999998642 12458888765
No 489
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=71.86 E-value=20 Score=33.56 Aligned_cols=104 Identities=14% Similarity=0.188 Sum_probs=64.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCC-CC--Cc-ceEE----
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFD-GV--PE-ADAA---- 251 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~--~~-~D~i---- 251 (354)
+..+.+|++|+.+.....+.+.++-++-.+++. .+.+..... .....+..+|++- +. .. ++++
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 568999999999999999999998887777776 444443321 2334455555543 10 00 1111
Q ss_pred ----E-------e----------ccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCC
Q 018565 252 ----I-------I----------KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDG 295 (354)
Q Consensus 252 ----~-------~----------~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~ 295 (354)
. . ..+.-+|++. ..++......++| +|.+++.+.+......
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~--~~~f~~~~~~~~~-~~~v~~~e~~~~~p~g 321 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLTRDTITHWQDK--SALFRGRVATLKP-GGKVLILEYIRGLPEG 321 (364)
T ss_pred chhhhhcccccCCCccccccccchhheeecccc--cHHHHhHhhccCc-CceEEehhhcCcCCcC
Confidence 0 0 1122223322 3567888889999 9999999987665443
No 490
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=71.67 E-value=26 Score=34.33 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=62.1
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCC----CCeEEEeec-hHHhhhccc------CC-CeEEeecCCCC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP----RIRGINFDL-PHVVCVAEK------CH-GVEHVGGDMFD- 243 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~- 243 (354)
+.+++.+. ..+..+|.|-.||+|.+.....+... ++.+.|++. +.....++. .+ .+....+|-+.
T Consensus 176 ~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~ 253 (489)
T COG0286 176 ELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN 253 (489)
T ss_pred HHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC
Confidence 34444444 23556999999999998877655332 367889997 666555543 11 34455555554
Q ss_pred CCC-------cceEEEeccccc--cCC--------------------hHHH-HHHHHHHHHhcCCCCceEEE
Q 018565 244 GVP-------EADAAIIKWVLH--DWG--------------------DDEC-IKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 244 ~~~-------~~D~i~~~~~lh--~~~--------------------~~~~-~~~L~~~~~~L~p~gG~lli 285 (354)
|.. .||.|+.+-... .|. .... -..++.+...|+| ||+..|
T Consensus 254 ~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~-~g~aai 324 (489)
T COG0286 254 PKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP-GGRAAI 324 (489)
T ss_pred CcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC-CceEEE
Confidence 321 277776654332 111 1112 5677777788887 775554
No 491
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=71.62 E-value=7.7 Score=31.48 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=47.8
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEe-----ecCCCCCCCcceEEEeccccc
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHV-----GGDMFDGVPEADAAIIKWVLH 258 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~-----~~d~~~~~~~~D~i~~~~~lh 258 (354)
+|.=+|+|.+..+.+..-..-+.+++.... ++.++..+. .+.+.+. ..|..+-..+.|+|++.-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav--- 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV--- 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S---
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc---
Confidence 356688888776655433333467888887 555554432 1112221 122222234578887743
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
|......+++++...+++ +-.+++
T Consensus 78 --Ps~~~~~~~~~l~~~l~~-~~~ii~ 101 (157)
T PF01210_consen 78 --PSQAHREVLEQLAPYLKK-GQIIIS 101 (157)
T ss_dssp ---GGGHHHHHHHHTTTSHT-T-EEEE
T ss_pred --cHHHHHHHHHHHhhccCC-CCEEEE
Confidence 344556889999999987 544444
No 492
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=71.52 E-value=11 Score=32.75 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=40.8
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
|..++-.+||+.+|++..-++.-|.-|.+.|+|+.... ..+..++.+
T Consensus 37 G~~l~e~~La~~~gvSrtPVReAL~rL~~eGlv~~~p~----rG~~V~~~~ 83 (230)
T COG1802 37 GERLSEEELAEELGVSRTPVREALRRLEAEGLVEIEPN----RGAFVAPLS 83 (230)
T ss_pred CCCccHHHHHHHhCCCCccHHHHHHHHHHCCCeEecCC----CCCeeCCCC
Confidence 47899999999999999999999999999999999973 455566555
No 493
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=71.45 E-value=6.8 Score=36.45 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=29.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLP 222 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 222 (354)
+.+...++|+|.|.|+++..+.-.| ++.+.++|-.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegs 185 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGS 185 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccc
Confidence 5678999999999999998887765 6788899873
No 494
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=71.42 E-value=5.9 Score=30.84 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=35.4
Q ss_pred CCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEec
Q 018565 53 ITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQ 96 (354)
Q Consensus 53 ~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 96 (354)
-|+.++|..+|++|--+.|-.+-|...||+..... .|.|..
T Consensus 36 PSvRelA~~~~VNpnTv~raY~eLE~eG~i~t~rg---~G~fV~ 76 (125)
T COG1725 36 PSVRELAKDLGVNPNTVQRAYQELEREGIVETKRG---KGTFVT 76 (125)
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecC---eeEEEc
Confidence 38999999999999999999999999999988873 355533
No 495
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=71.21 E-value=2.7 Score=38.76 Aligned_cols=37 Identities=30% Similarity=0.632 Sum_probs=34.6
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHH-HHhccCceeecc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMR-FLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~-~L~~~g~l~~~~ 86 (354)
+++.+++.+|+.+|.++..++..++ .|+..|+++..+
T Consensus 274 ~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 274 GGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred CCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCC
Confidence 4799999999999999999999999 999999998766
No 496
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=71.16 E-value=3.4 Score=28.85 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCCCHHHHHhHc--------CCCcccHHHHHHHHhccCceeeccCCC--C--CceEecCcccc
Q 018565 51 SPITLNELASAL--------KCDPSLLQRIMRFLIHLKFFKEVPTSQ--G--SMAFQQTPLSR 101 (354)
Q Consensus 51 ~~~t~~elA~~~--------g~~~~~l~~lL~~L~~~g~l~~~~~~~--~--~~~y~~t~~~~ 101 (354)
+|.+.-+|.+.+ .+++..+...|+-|...|+++...... + ...|++|+.|+
T Consensus 8 ~~~~Gyei~~~l~~~~~~~~~i~~g~lY~~L~~Le~~gli~~~~~~~~~~~~rk~Y~iT~~G~ 70 (75)
T PF03551_consen 8 GPMHGYEIKQELEERTGGFWKISPGSLYPALKRLEEEGLIESRWEEEGNGRPRKYYRITEKGR 70 (75)
T ss_dssp S-EEHHHHHHHHHHCSTTTEETTHHHHHHHHHHHHHTTSEEEEEEEETTSSEEEEEEESHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCcccChhHHHHHHHHHHhCCCEEEeeeccCCCCCCEEEEECHHHH
Confidence 577766665553 467889999999999999998876421 1 12399999885
No 497
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=71.15 E-value=5.2 Score=33.13 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=39.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..|++.|.+. |-.|=++||+.+|+...-++++|.+|...|++....
T Consensus 21 ~~v~~~l~~k-ge~tDeela~~l~i~~~~vrriL~~L~e~~li~~~k 66 (176)
T COG1675 21 VLVVDALLEK-GELTDEELAELLGIKKNEVRRILYALYEDGLISYRK 66 (176)
T ss_pred hHHHHHHHhc-CCcChHHHHHHhCccHHHHHHHHHHHHhCCceEEEe
Confidence 4467777763 579999999999999999999999999999998554
No 498
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=71.06 E-value=8.6 Score=28.58 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=43.8
Q ss_pred ChhhhhhhCCCCCCHHHHHhHc--------CCCcccHHHHHHHHhccCceeecc-CC-CC--CceEecCcccchh
Q 018565 41 GIAEAVEEKGSPITLNELASAL--------KCDPSLLQRIMRFLIHLKFFKEVP-TS-QG--SMAFQQTPLSRRL 103 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~--------g~~~~~l~~lL~~L~~~g~l~~~~-~~-~~--~~~y~~t~~~~~l 103 (354)
=|+-.|.. +|.+--+|.+.+ .+++..+...|+-|...|+++... ++ ++ .-.|++|+.|+.+
T Consensus 8 ~iL~~L~~--~~~~GYei~~~l~~~~~~~~~i~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~ 80 (100)
T TIGR03433 8 LILKTLSL--GPLHGYGIAQRIQQISEDVLQVEEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQ 80 (100)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHcCCccccCCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHH
Confidence 34555654 688877777774 678899999999999999999741 11 11 1349999988643
No 499
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=70.86 E-value=7.2 Score=33.57 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=34.1
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|..++..+||+.+|++..-++.-|+.|...|+|+...
T Consensus 32 G~~L~e~~La~~lgVSRtpVREAL~~L~~eGLV~~~~ 68 (221)
T PRK11414 32 GARLITKNLAEQLGMSITPVREALLRLVSVNALSVAP 68 (221)
T ss_pred CCccCHHHHHHHHCCCchhHHHHHHHHHHCCCEEecC
Confidence 3677889999999999999999999999999998876
No 500
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=70.54 E-value=2.7 Score=27.52 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=30.4
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|-+++..||++.|...+-+-.-||-|.+.|+++...
T Consensus 3 g~lvas~iAd~~GiTRSvIVNALRKleSaGvIesrS 38 (61)
T PF08222_consen 3 GRLVASKIADRVGITRSVIVNALRKLESAGVIESRS 38 (61)
T ss_dssp EEE-HHHHHHHHT--HHHHHHHHHHHHHTTSEEEEE
T ss_pred ceehHHHHHHHhCccHHHHHHHHHHHHhcCceeecc
Confidence 467889999999999999999999999999999775
Done!