BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018566
         (354 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P08021|FMRF_APLCA FMRF-amide neuropeptides OS=Aplysia californica PE=1 SV=3
          Length = 597

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 92/181 (50%), Gaps = 3/181 (1%)

Query: 90  SPEADLSRKQQKGHSPMKTLGSPEIQLKVYPPTKALGSPEVQQKVYPPTKALGSPEVQQK 149
           S ++DL ++  +     K++GS E+  +     K++GS EV ++     K+LG+ +V ++
Sbjct: 385 SVDSDLDKRFMR---FGKSVGSDEVDKRFMRFGKSVGSDEVDKRFMRFGKSLGTDDVNKR 441

Query: 150 VYPPTKALGSPEVQQRFYPPTKTLGSPEVQQKVYPPTKTLGSSEVQKKIYPPTKTLGSPE 209
                K+LG+ +V +RF    K+LG+ +V ++     K+LG+ +V K+     K+LG+ +
Sbjct: 442 FMRFGKSLGTDDVNKRFMRFGKSLGTEDVDKRFMRFGKSLGTDDVDKRFMRFGKSLGTDD 501

Query: 210 IQQKLYAPMKTLGSPEVQQKLYPPTKTLGSPEVSHLLPNEQKKANPPTKTVRSAEAGGNF 269
           + ++     K+LG+ +V ++     K+LG+ +V        K         R    G  F
Sbjct: 502 VDKRFMRFGKSLGTEDVDKRFMRFGKSLGTDDVDKRFMRFGKSLGTEDVDKRFMRFGKRF 561

Query: 270 L 270
           +
Sbjct: 562 M 562



 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 127 SPEVQQKVYPPTKALGSPEVQQKVYPPTKALGSPEVQQRFYPPTKTLGSPEVQQKVYPPT 186
             +V ++     K++   +V ++     K++    V +RF    K++ S ++ ++     
Sbjct: 342 DDDVDKRFMRFGKSV-DGDVDKRFMRFGKSV-DDAVDKRFMRFGKSVDS-DLDKRFMRFG 398

Query: 187 KTLGSSEVQKKIYPPTKTLGSPEIQQKLYAPMKTLGSPEVQQKLYPPTKTLGSPEVS 243
           K++GS EV K+     K++GS E+ ++     K+LG+ +V ++     K+LG+ +V+
Sbjct: 399 KSVGSDEVDKRFMRFGKSVGSDEVDKRFMRFGKSLGTDDVNKRFMRFGKSLGTDDVN 455


>sp|O35930|GP1BA_MOUSE Platelet glycoprotein Ib alpha chain OS=Mus musculus GN=Gp1ba PE=2
           SV=2
          Length = 734

 Score = 42.4 bits (98), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 61/151 (40%)

Query: 105 PMKTLGSPEIQLKVYPPTKALGSPEVQQKVYPPTKALGSPEVQQKVYPPTKALGSPEVQQ 164
           P  T  +PE  ++    T  L +PE      P T  L +PE      P T  L +P+   
Sbjct: 388 PTSTQATPEPNIQPMLTTSTLTTPEHSTTPVPTTTILTTPEHSTIPVPTTAILTTPKPST 447

Query: 165 RFYPPTKTLGSPEVQQKVYPPTKTLGSSEVQKKIYPPTKTLGSPEIQQKLYAPMKTLGSP 224
              P T TL + E      P T TL + E    + P T TL +PE          TL +P
Sbjct: 448 IPVPTTATLTTLEPSTTPVPTTATLTTPEPSTTLVPTTATLTTPEHSTTPVPTTATLTTP 507

Query: 225 EVQQKLYPPTKTLGSPEVSHLLPNEQKKANP 255
           E      P T TL +PE S  L N     +P
Sbjct: 508 EHSTTPVPTTATLTTPEPSTTLTNLVSTISP 538


>sp|Q22836|YGH1_CAEEL Uncharacterized protein T27F2.1 OS=Caenorhabditis elegans
           GN=T27F2.1 PE=1 SV=1
          Length = 535

 Score = 35.0 bits (79), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 140 ALGSPEVQQKVYPPTKALGSPEVQQRFYPPTKTLGSPEVQQKVYPPTKTL--GSSEVQKK 197
            LG P+  QK        G P+  QR +  T+ L S  +    Y P      G   VQ+ 
Sbjct: 396 VLGLPDTNQK------RTGEPQFDQRLFDKTQGLDSGAMDDDTYNPYDAAWRGGDSVQQH 449

Query: 198 IYPPTKTL 205
           +Y P+K L
Sbjct: 450 VYRPSKNL 457



 Score = 35.0 bits (79), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 95  LSRKQQKGHSPMKTLGSPEIQLKVYPPTKALGSPEVQQKVYPPTKALGSPEVQQKVYPPT 154
           L +++++  S    LG P+         K  G P+  Q+++  T+ L S  +    Y P 
Sbjct: 383 LRKERERDISEKIVLGLPDTN------QKRTGEPQFDQRLFDKTQGLDSGAMDDDTYNPY 436

Query: 155 KAL--GSPEVQQRFYPPTKTL 173
            A   G   VQQ  Y P+K L
Sbjct: 437 DAAWRGGDSVQQHVYRPSKNL 457


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.303    0.124    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,478,127
Number of Sequences: 539616
Number of extensions: 7053316
Number of successful extensions: 15166
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 340
Number of HSP's that attempted gapping in prelim test: 13555
Number of HSP's gapped (non-prelim): 1045
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 62 (28.5 bits)