Query 018566
Match_columns 354
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Mar 29 10:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02012 BNR: BNR/Asp-box repe 15.7 41 0.0009 19.1 -0.4 11 286-296 2-12 (12)
2 KOG4024 Complement component 1 10.0 1.1E+02 0.0023 29.2 0.3 32 86-117 74-105 (266)
3 PF04379 DUF525: Protein of un 9.4 1.1E+02 0.0023 24.0 0.0 18 326-343 17-34 (90)
4 PRK05363 TMAO/DMSO reductase; 8.1 1.7E+02 0.0038 28.0 0.9 16 11-26 268-283 (319)
5 KOG2441 mRNA splicing factor/p 7.8 2.6E+02 0.0055 28.8 2.0 54 140-205 390-448 (506)
6 PF08872 KGK: KGK domain; Int 7.0 3.2E+02 0.007 22.5 1.9 36 60-98 75-112 (114)
7 PF15470 DUF4637: Domain of un 6.9 1.6E+02 0.0034 26.7 -0.0 18 323-341 69-86 (173)
8 KOG3973 Uncharacterized conser 6.7 1.9E+02 0.004 29.4 0.4 45 194-250 229-273 (465)
9 KOG3427 Polyglutamine tract-bi 6.5 2.5E+02 0.0054 26.4 1.1 16 156-171 192-207 (222)
10 PF10548 P22_AR_C: P22AR C-ter 6.2 2.1E+02 0.0045 21.9 0.4 42 204-245 7-48 (74)
No 1
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=15.68 E-value=41 Score=19.09 Aligned_cols=11 Identities=55% Similarity=1.029 Sum_probs=7.8
Q ss_pred cchhhhhhhhh
Q 018566 286 RSTEAGKAWSK 296 (354)
Q Consensus 286 rsteagkawsk 296 (354)
+||..|+.|++
T Consensus 2 ~S~D~G~TW~~ 12 (12)
T PF02012_consen 2 YSTDGGKTWKK 12 (12)
T ss_dssp EESSTTSS-EE
T ss_pred EeCCCcccCcC
Confidence 57888999963
No 2
>KOG4024 consensus Complement component 1, Q subcomponent binding protein/mRNA splicing factor SF2, subunit P32 [Defense mechanisms]
Probab=9.95 E-value=1.1e+02 Score=29.23 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=26.7
Q ss_pred cccCCcchhchhhhhcCCCCCccCCCCceeee
Q 018566 86 SEFISPEADLSRKQQKGHSPMKTLGSPEIQLK 117 (354)
Q Consensus 86 sefispeadlsrkqqkghspmktlgspeiqlk 117 (354)
-+||+-|.-++||-|||..--||++-=++.|+
T Consensus 74 v~fl~~Ei~~erk~qkgkt~Pkt~~Gf~v~l~ 105 (266)
T KOG4024|consen 74 VRFLEAEIQLERKNQKGKTAPKTFAGFQVTLK 105 (266)
T ss_pred HHHHHHHHHHHHHhhcCCccCccccceEEEec
Confidence 36899999999999999998899887655553
No 3
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=9.45 E-value=1.1e+02 Score=24.01 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=13.1
Q ss_pred ceecCCCCCCccccchhc
Q 018566 326 PVRTENSSTQPVQLISKE 343 (354)
Q Consensus 326 pvrtensstqpvqliske 343 (354)
-||-+|.+..+|||+++.
T Consensus 17 ~I~I~N~~~~~vqL~sR~ 34 (90)
T PF04379_consen 17 RIRIENHSDESVQLLSRH 34 (90)
T ss_dssp EEEEEE-SSS-EEEEEEE
T ss_pred EEEEEECCCCCEEEEccE
Confidence 378889999999999864
No 4
>PRK05363 TMAO/DMSO reductase; Reviewed
Probab=8.06 E-value=1.7e+02 Score=27.99 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=12.5
Q ss_pred cCCCCCCCCcccccCC
Q 018566 11 KKDVDHPSWIPATNSS 26 (354)
Q Consensus 11 kkdvdhpswipatnss 26 (354)
.-+||||.|--|+.+-
T Consensus 268 np~v~hPrwsqa~er~ 283 (319)
T PRK05363 268 NPNVDHPRWSQATERR 283 (319)
T ss_pred CCCCCCCccccchhce
Confidence 3579999998887653
No 5
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=7.85 E-value=2.6e+02 Score=28.76 Aligned_cols=54 Identities=37% Similarity=0.444 Sum_probs=0.0
Q ss_pred CCCChhhhcccCCCCcCCCChhhh--ccccCCCCCCCC---hhhcccccCCCcCCCchhhhcccCCCCCCC
Q 018566 140 ALGSPEVQQKVYPPTKALGSPEVQ--QRFYPPTKTLGS---PEVQQKVYPPTKTLGSSEVQKKIYPPTKTL 205 (354)
Q Consensus 140 algspevqqkvypptkalgspevq--qrfypptktlgs---pevqqkvypptktlgssevqkkiypptktl 205 (354)
|||-+ +--+++||| ||||--++.|+| .+-+-.||--.-..+-+ +..||-|.++|
T Consensus 390 aLG~~----------~~~~~~e~qyDqRlFnq~~g~dSg~~~dd~ynvYD~~wr~~q~--~~siYrp~k~l 448 (506)
T KOG2441|consen 390 ALGLA----------KPSESGEVQYDQRLFNQGKGLDSGFADDDEYNVYDKPWRGAQD--ISSIYRPSKNL 448 (506)
T ss_pred hhccC----------CCCCCCcchhhHHhhhcccCccccccccccccccccccccCCc--hhhhhCCCccc
No 6
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=6.99 E-value=3.2e+02 Score=22.51 Aligned_cols=36 Identities=39% Similarity=0.599 Sum_probs=20.7
Q ss_pred CCCccccccccc--ccccccccCCCCCCcccCCcchhchhh
Q 018566 60 AGQGWLKDKRES--SFESFEDKMPTTPESEFISPEADLSRK 98 (354)
Q Consensus 60 agqgwlkdkres--sfesfedkmpttpesefispeadlsrk 98 (354)
.++||-|-|-.- +.|=.-| -|..++.| ||=.||.++
T Consensus 75 g~~~W~kGK~ri~~~leF~pd-e~e~~~~e--spLDdlRq~ 112 (114)
T PF08872_consen 75 GSKGWQKGKVRIKVSLEFIPD-EPEISEPE--SPLDDLRQS 112 (114)
T ss_pred CCCCCccceEEEEEEEEEecC-CCccCCCC--CchHHHHHh
Confidence 358999988655 3333223 24444444 777777654
No 7
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=6.89 E-value=1.6e+02 Score=26.72 Aligned_cols=18 Identities=56% Similarity=0.837 Sum_probs=13.3
Q ss_pred CCCceecCCCCCCccccch
Q 018566 323 GYSPVRTENSSTQPVQLIS 341 (354)
Q Consensus 323 gyspvrtensstqpvqlis 341 (354)
.|+|.|.| ||||-|.|+-
T Consensus 69 SY~PLRQE-sStqqValLR 86 (173)
T PF15470_consen 69 SYCPLRQE-SSTQQVALLR 86 (173)
T ss_pred eccccccc-chhhHHHHhh
Confidence 49999987 5677777654
No 8
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=6.69 E-value=1.9e+02 Score=29.38 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=30.8
Q ss_pred hhcccCCCCCCCCCHHHHHhhhccccccCChhhhcccCCCCcCCCCccccccCCccc
Q 018566 194 VQKKIYPPTKTLGSPEIQQKLYAPMKTLGSPEVQQKLYPPTKTLGSPEVSHLLPNEQ 250 (354)
Q Consensus 194 vqkkiypptktlgspeiqqklyapmktlgspevqqklypptktlgspevshllpneq 250 (354)
||.-.+-..-..-+.|||.+||++|..++++.++ -.|.|||...+
T Consensus 229 VqSF~Wsdr~k~~~~ei~~~~~~~~rei~~~K~~------------~dvahLLaArs 273 (465)
T KOG3973|consen 229 VQSFLWSDRLKMHREEIQSILSARVREIGRVKAN------------SDVAHLLAARS 273 (465)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHhccccch------------hHHHHHHHhhh
Confidence 3333333333345679999999999999998773 35778886544
No 9
>KOG3427 consensus Polyglutamine tract-binding protein PQBP-1 [Transcription]
Probab=6.49 E-value=2.5e+02 Score=26.36 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=11.4
Q ss_pred CCCChhhhccccCCCC
Q 018566 156 ALGSPEVQQRFYPPTK 171 (354)
Q Consensus 156 algspevqqrfypptk 171 (354)
..+-|-.||||||--+
T Consensus 192 ta~gPlfqqrpyPapg 207 (222)
T KOG3427|consen 192 TANGPLFQQRPYPAPG 207 (222)
T ss_pred ccCCCccccCcCCCch
Confidence 3566888888888644
No 10
>PF10548 P22_AR_C: P22AR C-terminal domain; InterPro: IPR018876 This entry represents the carboxy-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018875 from INTERPRO.
Probab=6.23 E-value=2.1e+02 Score=21.89 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=19.4
Q ss_pred CCCCHHHHHhhhccccccCChhhhcccCCCCcCCCCcccccc
Q 018566 204 TLGSPEIQQKLYAPMKTLGSPEVQQKLYPPTKTLGSPEVSHL 245 (354)
Q Consensus 204 tlgspeiqqklyapmktlgspevqqklypptktlgspevshl 245 (354)
.+-.-|+++=.|.=.-..-.-+.-+.|||+-+.|||+.-.++
T Consensus 7 ~fTe~El~~L~Wlw~~~~~m~~~~~~l~p~L~~lgS~~a~~~ 48 (74)
T PF10548_consen 7 QFTEEELQSLVWLWFAAERMRELCQELYPALKALGSNYAGKV 48 (74)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCccc
Confidence 344445554333222222223444556666666666554443
Done!