Query 018566
Match_columns 354
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Mon Mar 25 17:16:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1byy_A Protein (sodium channel 12.7 62 0.0021 22.1 0.8 27 208-234 18-44 (53)
2 2k7m_A GAP junction alpha-5 pr 10.7 1.6E+02 0.0053 23.6 2.6 24 241-264 33-56 (109)
3 4djc_B Sodium channel protein 7.8 1.1E+02 0.0037 19.8 0.5 19 209-227 2-20 (35)
4 2p1l_B Beclin 1; apoptosis, au 7.3 92 0.0031 20.0 0.0 8 10-17 24-31 (31)
5 2f1e_A Protein APAG; APAG prot 6.7 1.1E+02 0.0039 24.1 0.3 18 326-343 34-51 (127)
6 1xvs_A Protein APAG; MCSG APC2 6.7 1.2E+02 0.0039 24.1 0.3 18 326-343 33-50 (126)
7 1tza_A APAG protein, SOR45; st 6.6 1.2E+02 0.0041 24.4 0.3 18 326-343 33-50 (134)
8 4a5u_B 30S ribosomal protein S 6.5 2.2E+02 0.0075 21.6 1.8 10 219-228 19-28 (88)
9 3thg_A Ribulose bisphosphate c 6.2 70 0.0024 25.7 -1.2 25 254-278 82-106 (107)
10 3r8n_O 30S ribosomal protein S 6.1 2.4E+02 0.0083 21.4 1.8 9 220-228 20-28 (88)
No 1
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1
Probab=12.69 E-value=62 Score=22.09 Aligned_cols=27 Identities=41% Similarity=0.568 Sum_probs=14.2
Q ss_pred HHHHHhhhccccccCChhhhcccCCCC
Q 018566 208 PEIQQKLYAPMKTLGSPEVQQKLYPPT 234 (354)
Q Consensus 208 peiqqklyapmktlgspevqqklyppt 234 (354)
-|-|.|.|.-|+.|++-.-+..+-+|+
T Consensus 18 T~~Qkk~y~amkkl~~~kP~k~i~rP~ 44 (53)
T 1byy_A 18 TEEQKKYYNAMKKLGSKKPQKPIPRPA 44 (53)
T ss_dssp CHHHHHHHHHHHTSCC-----------
T ss_pred CHHHHHHHHHHHHHhccCCCCCCCCCc
Confidence 578999999999999987766665553
No 2
>2k7m_A GAP junction alpha-5 protein; cell junction, cell membrane, membrane, transmembrane, membrane protein; NMR {Rattus norvegicus}
Probab=10.68 E-value=1.6e+02 Score=23.65 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.5
Q ss_pred cccccCCccccccCCCcccccccc
Q 018566 241 EVSHLLPNEQKKANPPTKTVRSAE 264 (354)
Q Consensus 241 evshllpneqkkanpptktvrsae 264 (354)
-.+|.|+.+|.-+|--+..|+..+
T Consensus 33 ~~~~~laS~qN~an~~aEq~~~~~ 56 (109)
T 2k7m_A 33 DFSNNMGSRKNPDPLATEEVPNQE 56 (109)
T ss_dssp TSCSTTSSCSCCCSSSSSCCSSSS
T ss_pred cccccchhhhhhhhhhhhcccccc
Confidence 367899999999999999998754
No 3
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=7.83 E-value=1.1e+02 Score=19.78 Aligned_cols=19 Identities=47% Similarity=0.653 Sum_probs=15.3
Q ss_pred HHHHhhhccccccCChhhh
Q 018566 209 EIQQKLYAPMKTLGSPEVQ 227 (354)
Q Consensus 209 eiqqklyapmktlgspevq 227 (354)
|-|.|.|.-||.||+-.-|
T Consensus 2 ~~Qkk~y~amkKl~~kkp~ 20 (35)
T 4djc_B 2 NAQKKYYNAMKKLGSKKPQ 20 (35)
T ss_pred HhHHHHHHHHHHHcccCCC
Confidence 4588899999999987655
No 4
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=7.34 E-value=92 Score=20.04 Aligned_cols=8 Identities=63% Similarity=1.120 Sum_probs=0.4
Q ss_pred ccCCCCCC
Q 018566 10 TKKDVDHP 17 (354)
Q Consensus 10 tkkdvdhp 17 (354)
.+.|+|||
T Consensus 24 ~~sdIDhP 31 (31)
T 2p1l_B 24 GQTDVDHP 31 (31)
T ss_dssp C-------
T ss_pred CCCcCCCC
Confidence 46799998
No 5
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=6.73 E-value=1.1e+02 Score=24.05 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=15.2
Q ss_pred ceecCCCCCCccccchhc
Q 018566 326 PVRTENSSTQPVQLISKE 343 (354)
Q Consensus 326 pvrtensstqpvqliske 343 (354)
-||-+|-+..+|||++..
T Consensus 34 ~I~I~N~~~~~vQL~sRh 51 (127)
T 2f1e_A 34 SIRIQNAGAVPARLVARH 51 (127)
T ss_dssp EEEEEECSSSCEEEEEEE
T ss_pred EEEEEeCCCCCEEEEece
Confidence 378899999999999863
No 6
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=6.70 E-value=1.2e+02 Score=24.07 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=15.2
Q ss_pred ceecCCCCCCccccchhc
Q 018566 326 PVRTENSSTQPVQLISKE 343 (354)
Q Consensus 326 pvrtensstqpvqliske 343 (354)
-||-+|-+..+|||++..
T Consensus 33 ~I~I~N~~~~~vQL~sRh 50 (126)
T 1xvs_A 33 LITIKNLSSQTVQLMSRR 50 (126)
T ss_dssp EEEEEECSSSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEecE
Confidence 378899999999999863
No 7
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=6.56 E-value=1.2e+02 Score=24.35 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.1
Q ss_pred ceecCCCCCCccccchhc
Q 018566 326 PVRTENSSTQPVQLISKE 343 (354)
Q Consensus 326 pvrtensstqpvqliske 343 (354)
-||-+|-+..+|||++..
T Consensus 33 ~ItI~N~~~~~vQL~sRh 50 (134)
T 1tza_A 33 TITIINLGEQAAKLETRH 50 (134)
T ss_dssp EEEEEECSSSCEEEEEEE
T ss_pred EEEEEeCCCCCEEEEecE
Confidence 378899999999999863
No 8
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=6.54 E-value=2.2e+02 Score=21.58 Aligned_cols=10 Identities=50% Similarity=0.554 Sum_probs=5.2
Q ss_pred cccCChhhhc
Q 018566 219 KTLGSPEVQQ 228 (354)
Q Consensus 219 ktlgspevqq 228 (354)
..-||||||-
T Consensus 19 ~DTGS~EvQi 28 (88)
T 4a5u_B 19 NDTGSTEVQV 28 (88)
T ss_dssp TCTTCHHHHH
T ss_pred CCCCCHHHHH
Confidence 3445555553
No 9
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=6.16 E-value=70 Score=25.72 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=18.3
Q ss_pred CCCccccccccccCccchhhhhccc
Q 018566 254 NPPTKTVRSAEAGGNFLSKEQQNIE 278 (354)
Q Consensus 254 npptktvrsaeaggnflskeqqnie 278 (354)
++|.-|+...-.-||.|-.||||+-
T Consensus 82 ~~P~~tl~~Lle~G~~Lv~EQ~~V~ 106 (107)
T 3thg_A 82 EQPKMTIDKLLGYGGMLVQEQENVK 106 (107)
T ss_dssp CCCCCCHHHHHHHHHHHHTTC----
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 5777888888888999999999973
No 10
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=6.09 E-value=2.4e+02 Score=21.36 Aligned_cols=9 Identities=56% Similarity=0.586 Sum_probs=4.5
Q ss_pred ccCChhhhc
Q 018566 220 TLGSPEVQQ 228 (354)
Q Consensus 220 tlgspevqq 228 (354)
.-||||||-
T Consensus 20 DtGS~EvQi 28 (88)
T 3r8n_O 20 DTGSTEVQV 28 (88)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHHHHH
Confidence 345555553
Done!