Query 018566
Match_columns 354
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Mon Mar 25 17:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018566.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018566hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1diva1 d.99.1.1 (A:56-149) Ri 13.7 23 0.0017 24.6 0.5 30 94-123 54-83 (94)
2 d3deoa1 b.34.13.2 (A:85-128) C 12.5 24 0.0017 23.4 0.3 15 12-26 23-37 (44)
3 d2j01i1 d.99.1.1 (I:56-146) Ri 10.4 31 0.0023 23.7 0.3 30 94-123 53-82 (91)
4 d1xvsa_ b.1.23.1 (A:) ApaG {Vi 9.5 34 0.0025 25.2 0.3 17 327-343 34-50 (124)
5 d1rtua_ d.1.1.4 (A:) RNase U2 8.7 56 0.0041 23.7 1.2 20 34-53 69-88 (114)
6 d2chua1 c.92.2.4 (A:24-310) En 8.6 30 0.0022 25.9 -0.4 33 20-54 1-33 (287)
7 d1xq4a_ b.1.23.1 (A:) ApaG {Bo 7.7 47 0.0034 24.3 0.4 18 326-343 32-49 (123)
8 d1tzaa_ b.1.23.1 (A:) ApaG {Sh 7.4 48 0.0035 24.7 0.3 17 327-343 32-48 (132)
9 d2gycf1 d.99.1.1 (F:59-149) Ri 6.9 63 0.0046 22.2 0.7 29 94-122 51-80 (91)
10 d1jjfa_ c.69.1.2 (A:) Feruloyl 6.4 49 0.0036 23.0 -0.1 41 80-121 2-43 (255)
No 1
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.75 E-value=23 Score=24.60 Aligned_cols=30 Identities=17% Similarity=0.412 Sum_probs=23.9
Q ss_pred hchhhhhcCCCCCccCCCCceeeeecCCCC
Q 018566 94 DLSRKQQKGHSPMKTLGSPEIQLKVYPPTK 123 (354)
Q Consensus 94 dlsrkqqkghspmktlgspeiqlkvypptk 123 (354)
++.|++-.-..|+|++|.-++.+++|+-..
T Consensus 54 ~idk~~I~l~~~IK~~G~y~v~i~Lh~~V~ 83 (94)
T d1diva1 54 KLDKRKIELADAIRALGYTNVPVKLHPEVT 83 (94)
T ss_dssp CCCGGGBCCCSCEEESEEEEEEEEEETTEE
T ss_pred eecHHHhhccCchhhcEeEEEEEEecCCeE
Confidence 466777666679999999999999987543
No 2
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=12.48 E-value=24 Score=23.43 Aligned_cols=15 Identities=40% Similarity=0.888 Sum_probs=11.7
Q ss_pred CCCCCCCCcccccCC
Q 018566 12 KDVDHPSWIPATNSS 26 (354)
Q Consensus 12 kdvdhpswipatnss 26 (354)
||-.-|||+|+.|-.
T Consensus 23 kD~h~pSWvP~~~IA 37 (44)
T d3deoa1 23 KDGHSPSWVPSSYIA 37 (44)
T ss_dssp TTCCCCEEEEGGGSC
T ss_pred ccCCCCCcCCHHHHH
Confidence 677779999987643
No 3
>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]}
Probab=10.37 E-value=31 Score=23.71 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=22.0
Q ss_pred hchhhhhcCCCCCccCCCCceeeeecCCCC
Q 018566 94 DLSRKQQKGHSPMKTLGSPEIQLKVYPPTK 123 (354)
Q Consensus 94 dlsrkqqkghspmktlgspeiqlkvypptk 123 (354)
++.|++-.=..|+|++|.-++.+++||--.
T Consensus 53 ~Idk~~I~l~~~IK~~G~~~v~i~L~~~V~ 82 (91)
T d2j01i1 53 TIDPKRLALEKPIKELGEYVLTYKPHPEVP 82 (91)
T ss_dssp CCCTTTTCCSSCCCSCEEEECCCSSSSCCC
T ss_pred eechHHhhccccccceEEEEEEEEecCCEE
Confidence 445555555678999999999888887544
No 4
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}
Probab=9.52 E-value=34 Score=25.18 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=14.7
Q ss_pred eecCCCCCCccccchhc
Q 018566 327 VRTENSSTQPVQLISKE 343 (354)
Q Consensus 327 vrtensstqpvqliske 343 (354)
|+-+|.+.++|||++..
T Consensus 34 I~I~N~~~~~vQLlsR~ 50 (124)
T d1xvsa_ 34 ITIKNLSSQTVQLMSRR 50 (124)
T ss_dssp EEEEECSSSCEEEEEEE
T ss_pred EEEEeCCCCCEEEEeeE
Confidence 67799999999999864
No 5
>d1rtua_ d.1.1.4 (A:) RNase U2 {Ustilago sphaerogena [TaxId: 5271]}
Probab=8.71 E-value=56 Score=23.74 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=15.5
Q ss_pred ccccCCCCCCcccCCCceee
Q 018566 34 QDYMGGGSLSEEKKPDRVVE 53 (354)
Q Consensus 34 qdymgggslseekkpdrvve 53 (354)
.-|.+|+....+.-|||||-
T Consensus 69 g~~y~g~~~~~~PG~dRVVy 88 (114)
T d1rtua_ 69 GPYYSSRDNYVSPGPDRVIY 88 (114)
T ss_dssp SSCCCBTTBCCCCCSEEEEE
T ss_pred CcccCCCcccCCCCCeEEEE
Confidence 35677777777788999996
No 6
>d2chua1 c.92.2.4 (A:24-310) Enterochelin uptake protein CeuE {Campylobacter jejuni [TaxId: 197]}
Probab=8.55 E-value=30 Score=25.85 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=27.1
Q ss_pred cccccCCCcchhhcccccCCCCCCcccCCCceeee
Q 018566 20 IPATNSSNGEAIQRQDYMGGGSLSEEKKPDRVVET 54 (354)
Q Consensus 20 ipatnssngeaiqrqdymgggslseekkpdrvvet 54 (354)
||.+.+.+|..+.-.|..| ...-.++|.|||-.
T Consensus 1 ~~~~~~~~~~~~tv~d~~G--~v~vp~~p~RIv~l 33 (287)
T d2chua1 1 LPISMSDEGDSFLVKDSLG--ENKIPKNPSKVVIL 33 (287)
T ss_dssp CCCEEEECSSEEEEECSSC--EEEEESSCSSEEEC
T ss_pred CCCcccCCCCCEEEEeCCc--eEECCCCCCEEEEe
Confidence 5788888999999999888 45667899999843
No 7
>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}
Probab=7.75 E-value=47 Score=24.34 Aligned_cols=18 Identities=39% Similarity=0.693 Sum_probs=15.1
Q ss_pred ceecCCCCCCccccchhc
Q 018566 326 PVRTENSSTQPVQLISKE 343 (354)
Q Consensus 326 pvrtensstqpvqliske 343 (354)
-|+-+|.+.++|||+|..
T Consensus 32 ~I~I~N~~~~~vQL~sR~ 49 (123)
T d1xq4a_ 32 TVRITNTGSHPAQVISRH 49 (123)
T ss_dssp EEEEEECSSSCEEEEEEE
T ss_pred EEEEEECCCCcEEEEeee
Confidence 378899999999999853
No 8
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}
Probab=7.37 E-value=48 Score=24.69 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.7
Q ss_pred eecCCCCCCccccchhc
Q 018566 327 VRTENSSTQPVQLISKE 343 (354)
Q Consensus 327 vrtensstqpvqliske 343 (354)
|+-+|.+.++|||+|..
T Consensus 32 ItI~N~~~~~vQLlsR~ 48 (132)
T d1tzaa_ 32 ITIINLGEQAAKLETRH 48 (132)
T ss_dssp EEEEECSSSCEEEEEEE
T ss_pred EEEEeCCCCCEEEEeeE
Confidence 77899999999999863
No 9
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]}
Probab=6.94 E-value=63 Score=22.24 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=20.4
Q ss_pred hchhhhhcC-CCCCccCCCCceeeeecCCC
Q 018566 94 DLSRKQQKG-HSPMKTLGSPEIQLKVYPPT 122 (354)
Q Consensus 94 dlsrkqqkg-hspmktlgspeiqlkvyppt 122 (354)
++.|++-.- +.|.|++|.-++.+++|+--
T Consensus 51 ~Idk~~I~l~~~~IK~lG~y~v~i~Lh~~V 80 (91)
T d2gycf1 51 EVAKSEVRLPNGVLRTTGEHEVSFQVHSEV 80 (91)
T ss_dssp CCCSTTSCCSSCCCCBSSEEEEEECSSSSC
T ss_pred cccHHHEECCCccccccEEEEEEEEEcCCE
Confidence 344555443 56899999999988888753
No 10
>d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]}
Probab=6.40 E-value=49 Score=23.04 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCCCCCcccCCcchhchhhhhcCCC-CCccCCCCceeeeecCC
Q 018566 80 MPTTPESEFISPEADLSRKQQKGHS-PMKTLGSPEIQLKVYPP 121 (354)
Q Consensus 80 mpttpesefispeadlsrkqqkghs-pmktlgspeiqlkvypp 121 (354)
||++|.+.|..+..++..-+-.-++ .-..+| .++++.||-|
T Consensus 2 ~p~~~~~~~~~~~~~~~~g~~~~~~~~S~~~g-~~~~~~v~lP 43 (255)
T d1jjfa_ 2 LPTMPPSGYDQVRNGVPRGQVVNISYFSTATN-STRPARVYLP 43 (255)
T ss_dssp CSCCCCTTTTSCCTTCCCCEEEEEEEEETTTT-EEEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCceEEEEEEEEecCCC-CEEEEEEEeC
Confidence 8999999998887776521100010 111233 5677777755
Done!