BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018567
         (354 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
           With Mn And Udp-2f-Galactose
 pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
           With Donor And Acceptor Sugar Analogs
          Length = 311

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 233 YFNTGVMVIDLERWRKGDYTRKIVEWMELQKRMRIYE----LGSLPPFLLVFAG---NIA 285
           YFN GV++I+L++WR+ D  +   EW+E  K +  Y+    L  L    + +A    N  
Sbjct: 151 YFNAGVLLINLKKWRRHDIFKXSSEWVEQYKDVXQYQDQDILNGLFKGGVCYANSRFNFX 210

Query: 286 PVDHRWNQHGLGGDNYRGLCRDL--HPGPVSLLHWSGKGKPWVR 327
           P ++ +  +     +   L RD      PV++ H+ G  KPW R
Sbjct: 211 PTNYAFXANWFASRHTDPLYRDRTNTVXPVAVSHYCGPAKPWHR 254


>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
           Lgtc
          Length = 311

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 233 YFNTGVMVIDLERWRKGDYTRKIVEWMELQKRMRIYE----LGSLPPFLLVFAG---NIA 285
           YFN GV++I+L++WR+ D  +   EW+E  K +  Y+    L  L    + +A    N  
Sbjct: 151 YFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDEDILNGLFKGGVCYANSRFNFM 210

Query: 286 PVDHRWNQHGLGGDNYRGLCRDLHPG--PVSLLHWSGKGKPWVR 327
           P ++ +  +     +   L RD      PV++ H+ G  KPW R
Sbjct: 211 PTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHR 254


>pdb|3FHK|A Chain A, Crystal Structure Of Apc1446, B.Subtilis Yphp Disulfide
           Isomerase
 pdb|3FHK|D Chain D, Crystal Structure Of Apc1446, B.Subtilis Yphp Disulfide
           Isomerase
 pdb|3FHK|E Chain E, Crystal Structure Of Apc1446, B.Subtilis Yphp Disulfide
           Isomerase
 pdb|3FHK|F Chain F, Crystal Structure Of Apc1446, B.Subtilis Yphp Disulfide
           Isomerase
          Length = 147

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 84  AAIHSVLQHSSCPQNVLFHFVSSDKDANNLLHETISHSFPS 124
           AA  +VLQ+   P N +  F   DK+A   + E  + + PS
Sbjct: 66  AATQAVLQNDKTPDNTVTVFAGQDKEATAKMREYFTGAAPS 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,312,553
Number of Sequences: 62578
Number of extensions: 412307
Number of successful extensions: 667
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 3
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)