Query 018568
Match_columns 354
No_of_seqs 254 out of 1692
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:06:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 1.7E-74 3.6E-79 523.4 21.6 283 22-333 78-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 3E-68 6.6E-73 504.6 27.9 276 29-332 53-338 (348)
3 KOG1543 Cysteine proteinase Ca 100.0 2.7E-67 5.9E-72 494.7 27.1 278 28-335 40-324 (325)
4 PTZ00021 falcipain-2; Provisio 100.0 2E-65 4.4E-70 498.8 26.7 286 18-333 172-487 (489)
5 PTZ00200 cysteine proteinase; 100.0 9.8E-65 2.1E-69 492.6 26.0 272 28-332 140-443 (448)
6 cd02620 Peptidase_C1A_Cathepsi 100.0 3.4E-61 7.5E-66 437.2 24.1 228 99-332 1-236 (236)
7 cd02621 Peptidase_C1A_Cathepsi 100.0 1E-60 2.2E-65 436.3 23.7 223 98-335 1-243 (243)
8 cd02698 Peptidase_C1A_Cathepsi 100.0 6.2E-60 1.3E-64 429.8 24.7 224 98-335 1-239 (239)
9 PTZ00049 cathepsin C-like prot 100.0 2.8E-57 6.1E-62 450.5 24.6 240 95-337 378-679 (693)
10 cd02248 Peptidase_C1A Peptidas 100.0 7E-57 1.5E-61 402.3 22.5 205 99-330 1-208 (210)
11 PTZ00364 dipeptidyl-peptidase 100.0 4.1E-56 9E-61 438.1 22.8 223 95-334 202-459 (548)
12 PF00112 Peptidase_C1: Papain 100.0 1.2E-54 2.6E-59 389.5 19.6 212 98-333 1-219 (219)
13 KOG1544 Predicted cysteine pro 100.0 5.9E-54 1.3E-58 384.3 7.5 299 30-334 140-460 (470)
14 smart00645 Pept_C1 Papain fami 100.0 5.1E-50 1.1E-54 347.4 18.2 168 98-330 1-171 (174)
15 cd02619 Peptidase_C1 C1 Peptid 100.0 6.2E-47 1.3E-51 340.2 20.8 197 101-320 1-213 (223)
16 PTZ00462 Serine-repeat antigen 100.0 4.8E-46 1E-50 379.9 22.1 225 108-341 538-788 (1004)
17 COG4870 Cysteine protease [Pos 100.0 1E-30 2.3E-35 240.5 7.1 203 95-324 96-318 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 5.8E-24 1.3E-28 206.0 14.7 204 114-319 54-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.7 9.8E-16 2.1E-20 149.0 14.1 205 114-319 55-400 (438)
20 COG3579 PepC Aminopeptidase C 98.8 2.4E-08 5.2E-13 91.7 10.7 80 238-318 296-401 (444)
21 PF08246 Inhibitor_I29: Cathep 98.2 1.1E-06 2.5E-11 61.6 3.0 43 27-70 14-58 (58)
22 PF08127 Propeptide_C1: Peptid 97.9 1.7E-05 3.8E-10 51.1 3.5 39 39-80 2-40 (41)
23 smart00848 Inhibitor_I29 Cathe 97.5 4.1E-05 8.9E-10 53.2 1.0 40 29-69 16-57 (57)
24 KOG4128 Bleomycin hydrolases a 97.4 0.00014 3E-09 67.2 3.8 79 114-192 62-169 (457)
25 PF13529 Peptidase_C39_2: Pept 96.7 0.02 4.4E-07 46.6 10.4 58 237-304 87-144 (144)
26 PF05543 Peptidase_C47: Stapho 96.6 0.031 6.7E-07 47.6 10.6 120 119-305 18-145 (175)
27 PF09778 Guanylate_cyc_2: Guan 90.1 1.1 2.4E-05 39.7 6.9 61 237-302 111-180 (212)
28 PF14399 Transpep_BrtH: NlpC/p 88.6 1.2 2.6E-05 41.9 6.5 66 239-318 78-143 (317)
29 COG4990 Uncharacterized protei 87.9 1.2 2.6E-05 38.2 5.3 48 237-305 121-168 (195)
30 cd02549 Peptidase_C39A A sub-f 74.6 10 0.00022 30.6 6.1 45 242-304 70-114 (141)
31 PF07172 GRP: Glycine rich pro 74.2 3.1 6.7E-05 32.1 2.6 22 1-22 1-22 (95)
32 PF12385 Peptidase_C70: Papain 73.0 57 0.0012 27.6 10.9 37 238-289 97-133 (166)
33 cd00044 CysPc Calpains, domain 70.5 7.5 0.00016 36.7 5.0 28 278-306 234-263 (315)
34 PLN03207 stomagen; Provisional 65.1 5.6 0.00012 30.4 2.3 46 3-48 12-57 (113)
35 PF10731 Anophelin: Thrombin i 61.2 10 0.00022 26.3 2.8 29 1-30 1-29 (65)
36 PF13956 Ibs_toxin: Toxin Ibs, 54.1 5.3 0.00012 20.7 0.4 14 1-14 1-14 (19)
37 PF01640 Peptidase_C10: Peptid 52.4 62 0.0013 28.1 7.1 50 240-315 141-192 (192)
38 PF11395 DUF2873: Protein of u 45.2 23 0.00051 22.0 2.2 20 3-22 15-34 (43)
39 PF08475 Baculo_VP91_N: Viral 44.2 24 0.00051 30.6 3.0 45 1-49 1-45 (183)
40 PF07172 GRP: Glycine rich pro 41.2 22 0.00048 27.4 2.2 19 4-22 7-25 (95)
41 PF12273 RCR: Chitin synthesis 39.3 21 0.00046 29.0 2.0 15 6-20 4-18 (130)
42 smart00230 CysPc Calpain-like 35.8 75 0.0016 30.1 5.4 28 278-306 226-255 (318)
43 PHA02909 hypothetical protein; 34.3 37 0.0008 23.2 2.1 22 1-22 35-56 (72)
44 PF06143 Baculo_11_kDa: Baculo 30.9 21 0.00046 26.7 0.6 21 2-22 41-61 (84)
45 PF15588 Imm7: Immunity protei 28.8 2E+02 0.0044 22.7 6.0 32 283-314 18-55 (115)
46 PF00648 Peptidase_C2: Calpain 26.9 65 0.0014 29.9 3.3 38 279-317 213-281 (298)
47 PF15528 Toxin_48: Putative to 25.7 52 0.0011 28.6 2.2 29 285-318 30-62 (189)
48 PF10717 ODV-E18: Occlusion-de 24.9 48 0.001 24.7 1.6 15 3-17 29-43 (85)
49 TIGR02608 delta_60_rpt delta-6 24.7 2.3E+02 0.0051 19.3 5.0 36 283-318 14-54 (55)
50 PF11471 Sugarporin_N: Maltopo 23.8 93 0.002 21.7 2.8 42 1-43 1-42 (60)
51 PF15240 Pro-rich: Proline-ric 23.1 53 0.0011 28.3 1.7 10 5-14 2-11 (179)
52 KOG4621 Uncharacterized conser 22.8 2.3E+02 0.0051 23.1 5.2 63 238-303 58-132 (167)
53 PF09028 Mac-1: Mac 1; InterP 22.5 1.5E+02 0.0032 28.2 4.6 37 239-291 233-269 (333)
54 PRK14758 hypothetical protein; 22.1 95 0.0021 17.7 2.0 8 11-18 12-19 (27)
55 PHA02677 hypothetical protein; 21.8 69 0.0015 24.9 1.9 19 4-22 2-20 (108)
56 PF06692 MNSV_P7B: Melon necro 20.9 1.2E+02 0.0026 20.7 2.7 19 4-22 14-32 (61)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-74 Score=523.37 Aligned_cols=283 Identities=30% Similarity=0.560 Sum_probs=232.7
Q ss_pred ccccc-ccccccccccccHHHHH--HHHHcCCCCCeEEecCCCCCCCCHHHHHH-hhCCCCCCCCCCCCCCcccccCCCC
Q 018568 22 TFAEG-VVSKLKLDSHILQDSII--KEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKGLLLGVPVKTHDKSLK 97 (354)
Q Consensus 22 ~~~~~-~~~~~~~~~~~~~~~~i--~~~N~~~~~~~~~~~N~~Fsd~t~~Ef~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (354)
..+.+ +..|...|+.+|..+++ ++++++...+-..|+| +|||||+|||++ +++.+....................
T Consensus 78 f~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvt-qFSDlT~eEFkk~~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (372)
T KOG1542|consen 78 FGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVT-QFSDLTEEEFKKIYLGVKRRGSKLPGDAAEAPIEPGES 156 (372)
T ss_pred cCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCcc-chhhcCHHHHHHHhhccccccccCccccccCcCCCCCC
Confidence 34444 56777889999998764 4476644448889999 999999999998 4555442111111111111233578
Q ss_pred CCCccccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccccHHHHHHhcCCCCCCCCCCCchHHHHHH
Q 018568 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY 177 (354)
Q Consensus 98 lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~ 177 (354)
||++||||++ |+||||||||+||||||||+++++|++++|++|+.+.||||+|+||+. +++||+||.+..||+|
T Consensus 157 lP~~fDWR~k----gaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~--~d~gC~GGl~~nA~~~ 230 (372)
T KOG1542|consen 157 LPESFDWRDK----GAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS--CDNGCNGGLMDNAFKY 230 (372)
T ss_pred CCcccchhcc----CCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC--cCCcCCCCChhHHHHH
Confidence 9999999998 899999999999999999999999999999999999999999999995 6899999999999999
Q ss_pred HH-HcCccCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeE-eCCCHHHHHHHHHHcCCEEEE
Q 018568 178 FV-HHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVS 255 (354)
Q Consensus 178 ~~-~~Gi~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~gPV~v~ 255 (354)
++ ..|+..|++|||.+.. ...|..... .....|++|. ++.|+++|.+.|.++|||+|+
T Consensus 231 ~~~~gGL~~E~dYPY~g~~----------------~~~C~~~~~----~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vg 290 (372)
T KOG1542|consen 231 IKKAGGLEKEKDYPYTGKK----------------GNQCHFDKS----KIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVG 290 (372)
T ss_pred HHHhCCccccccCCccccC----------------CCccccchh----hceEEEeccEecCCCHHHHHHHHHhcCCeEEE
Confidence 54 4689999999997651 226766542 4567889888 788999999999999999999
Q ss_pred EEecccccccCCceeec---CCCCccCCeeEEEEEeCCCCC-CccEEEEEccCCCCCCCCceEEEEccCCccccccceeE
Q 018568 256 FTVYEDFAHYKSGVYKH---ITGDVMGGHAVKLIGWGTSDD-GEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 331 (354)
Q Consensus 256 ~~~~~~f~~y~~Giy~~---~~~~~~~~Hav~iVGyg~~~~-g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~~ 331 (354)
|++ ..++.|++||..+ .|....++|+|+||||| ... .++|||||||||++|||+||+|+.||.|.|||++.+.+
T Consensus 291 iNa-~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG-~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss 368 (372)
T KOG1542|consen 291 INA-KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYG-SSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSS 368 (372)
T ss_pred Ech-HHHHHhcccccCCCcccCCccccCceEEEEeec-CCCCCCceEEEECCccccccccceEEEeccccccccccchhh
Confidence 996 6799999999987 34455589999999999 545 89999999999999999999999999999999998877
Q ss_pred ee
Q 018568 332 GL 333 (354)
Q Consensus 332 ~~ 333 (354)
+.
T Consensus 369 ~~ 370 (372)
T KOG1542|consen 369 AA 370 (372)
T ss_pred hh
Confidence 64
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=3e-68 Score=504.60 Aligned_cols=276 Identities=24% Similarity=0.493 Sum_probs=218.5
Q ss_pred ccccccccccHHH--HHHHHHcCCCCCeEEecCCCCCCCCHHHHHH-hhCCCC-CCCCCC-CCCCccc-ccCCCCCCCcc
Q 018568 29 SKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKP-TPKGLL-LGVPVKT-HDKSLKLPKSF 102 (354)
Q Consensus 29 ~~~~~~~~~~~~~--~i~~~N~~~~~~~~~~~N~~Fsd~t~~Ef~~-~~~~~~-~~~~~~-~~~~~~~-~~~~~~lP~s~ 102 (354)
.|...|+.+|.++ +|++||++ +.+|++++| +|+|||.|||++ +++... ...... ....... .....+||++|
T Consensus 53 ~E~~~R~~iF~~N~~~I~~~N~~-~~~~~lg~N-~FaDlT~eEf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~ 130 (348)
T PTZ00203 53 TEEQQRLANFERNLELMREHQAR-NPHARFGIT-KFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRKARADLSAVPDAV 130 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCeEEecc-ccccCCHHHHHHHhcCCCcccccccccccccccccccccccCCCCC
Confidence 4677789999985 79999984 568999999 999999999987 443221 110100 0000011 01123699999
Q ss_pred ccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccccHHHHHHhcCCCCCCCCCCCchHHHHHHHHHc-
Q 018568 103 DARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHH- 181 (354)
Q Consensus 103 D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~~~~- 181 (354)
|||++ |.|+||||||.||||||||+++++|++++++++..+.||+|+|+||+. .+.||+||++..||+|++++
T Consensus 131 DWR~~----g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~--~~~GC~GG~~~~a~~yi~~~~ 204 (348)
T PTZ00203 131 DWREK----GAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH--VDNGCGGGLMLQAFEWVLRNM 204 (348)
T ss_pred cCCcC----CCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC--CCCCCCCCCHHHHHHHHHHhc
Confidence 99987 889999999999999999999999999999999999999999999986 35799999999999999764
Q ss_pred --CccCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeE-eCCCHHHHHHHHHHcCCEEEEEEe
Q 018568 182 --GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTV 258 (354)
Q Consensus 182 --Gi~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~gPV~v~~~~ 258 (354)
|+++|++|||.+..+ ..+ .|..... ....+.+.+|. +..+++.|+++|+++|||+|+|++
T Consensus 205 ~ggi~~e~~YPY~~~~~----------~~~----~C~~~~~---~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a 267 (348)
T PTZ00203 205 NGTVFTEKSYPYVSGNG----------DVP----ECSNSSE---LAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDA 267 (348)
T ss_pred CCCCCccccCCCccCCC----------CCC----cCCCCcc---cccceEecceeecCcCHHHHHHHHHhCCCEEEEEEh
Confidence 578999999965421 001 2332111 01224566776 566888999999999999999998
Q ss_pred cccccccCCceeecCCCCccCCeeEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEccCCccccccceeEe
Q 018568 259 YEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 332 (354)
Q Consensus 259 ~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~~~ 332 (354)
.+|++|++|||+. +.....+|||+||||| +++|++|||||||||++|||+|||||+||.|.|||++.++.+
T Consensus 268 -~~f~~Y~~GIy~~-c~~~~~nHaVliVGYG-~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~ 338 (348)
T PTZ00203 268 -SSFMSYHSGVLTS-CIGEQLNHGVLLVGYN-MTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSV 338 (348)
T ss_pred -hhhcCccCceeec-cCCCCCCeEEEEEEEe-cCCCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEE
Confidence 4899999999985 3333469999999999 667889999999999999999999999999999999999887
No 3
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-67 Score=494.70 Aligned_cols=278 Identities=40% Similarity=0.727 Sum_probs=231.0
Q ss_pred cccccccccccHHH--HHHHHHcCCCCCeEEecCCCCCCCCHHHHHHhh-CCCCCCCCCCCCCCcccccCCCCCCCcccc
Q 018568 28 VSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKHLL-GVKPTPKGLLLGVPVKTHDKSLKLPKSFDA 104 (354)
Q Consensus 28 ~~~~~~~~~~~~~~--~i~~~N~~~~~~~~~~~N~~Fsd~t~~Ef~~~~-~~~~~~~~~~~~~~~~~~~~~~~lP~s~D~ 104 (354)
..+..+|+.+|..+ +++.||.....+|++++| +|+|+|.+|+++.. +..+... .. ..........+||++|||
T Consensus 40 ~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n-~~~d~~~ee~~~~~~~~~~~~~-~~--~~~~~~~~~~~~p~s~Dw 115 (325)
T KOG1543|consen 40 RVEKKARRAIFKENLQKIESHNLKYVLSFLMGVN-QFADLTTEEFKRKKTGKKPPEI-KR--DKFTEKLDGDDLPDSFDW 115 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccc-cccccchHHHHHhhccccCccc-cc--cccccccchhhCCCCccc
Confidence 45555667788775 588899865789999999 99999999999844 4333222 11 111112234689999999
Q ss_pred CcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCccccHHHHHHhcCCCCCCCCCCCchHHHHHHHHHcCc
Q 018568 105 RSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGV 183 (354)
Q Consensus 105 R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~-~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~~~~Gi 183 (354)
|++| ..++||||||.||||||||++++||++++|+++ ..+.||+|+|+||+.. ++.||+||.+..|++|++++|+
T Consensus 116 R~~~---~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A~~yi~~~G~ 191 (325)
T KOG1543|consen 116 RDKG---AVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNAFKYIKKNGG 191 (325)
T ss_pred cccC---CcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHHHHHHHHhCC
Confidence 9996 456779999999999999999999999999999 9999999999999985 6789999999999999999999
Q ss_pred cC-CCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeE-eCCCHHHHHHHHHHcCCEEEEEEeccc
Q 018568 184 VT-EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYED 261 (354)
Q Consensus 184 ~~-e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~gPV~v~~~~~~~ 261 (354)
++ +++|||.+. ..+|..... ...+.+.++. ++.++++|+++|+.+|||+|+|++..+
T Consensus 192 ~t~~~~Ypy~~~-----------------~~~C~~~~~----~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~ 250 (325)
T KOG1543|consen 192 VTECENYPYIGK-----------------DGTCKSNKK----DKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYED 250 (325)
T ss_pred CCCCcCCCCcCC-----------------CCCccCCCc----cceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhh
Confidence 88 999999655 124554332 2344455555 777899999999999999999999999
Q ss_pred ccccCCceeecCCCCc-cCCeeEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEccCCccccccceeEeecc
Q 018568 262 FAHYKSGVYKHITGDV-MGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPS 335 (354)
Q Consensus 262 f~~y~~Giy~~~~~~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~~~~p~ 335 (354)
|++|++|||.++++.. .++|||+|||||+ .++.+|||||||||++|||+|||||.||.|.|+|++.+.++.|+
T Consensus 251 F~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 251 FSLYKGGVYAEEKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPIK 324 (325)
T ss_pred hhhccCceEeCCCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCCC
Confidence 9999999999998876 4899999999996 77889999999999999999999999999999999998887654
No 4
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=2e-65 Score=498.76 Aligned_cols=286 Identities=26% Similarity=0.497 Sum_probs=220.1
Q ss_pred HHhhccccccc-ccccccccccHHH--HHHHHHcCCCCCeEEecCCCCCCCCHHHHHH-hhCCCCC-CCCC-C--CC-CC
Q 018568 18 ISSQTFAEGVV-SKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPT-PKGL-L--LG-VP 88 (354)
Q Consensus 18 ~~~~~~~~~~~-~~~~~~~~~~~~~--~i~~~N~~~~~~~~~~~N~~Fsd~t~~Ef~~-~~~~~~~-~~~~-~--~~-~~ 88 (354)
....+.+.+.. .|...|+.+|.++ .|++||++++.+|++++| +|+|||.|||++ +++.... +... . .. ..
T Consensus 172 wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiN-qFsDlT~EEF~~~~l~~~~~~~~~~~~~~~~~~~ 250 (489)
T PTZ00021 172 FIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMN-RFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRVIN 250 (489)
T ss_pred HHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEecc-ccccCCHHHHHHHhcccccccccccccccccccc
Confidence 33444555533 4566899999985 799999866689999999 999999999997 4543311 1110 0 00 00
Q ss_pred c----cc-ccC-CCCCCCccccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccccHHHHHHhcCCCC
Q 018568 89 V----KT-HDK-SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLC 162 (354)
Q Consensus 89 ~----~~-~~~-~~~lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~ 162 (354)
. .. .+. ...+|++||||+. +.|+||||||.||||||||+++++|++++|+++..+.||+|+|+||+. .
T Consensus 251 ~~~~~~~~~~~~~~~~P~s~DWR~~----g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~--~ 324 (489)
T PTZ00021 251 YDDVIKKYKPKDATFDHAKYDWRLH----NGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSF--K 324 (489)
T ss_pred ccccccccccccccCCccccccccC----CCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhcc--C
Confidence 0 00 011 1124999999987 789999999999999999999999999999999999999999999985 3
Q ss_pred CCCCCCCchHHHHHHHHHc-CccCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeE-eCCCHH
Q 018568 163 GDGCDGGYPISAWRYFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPE 240 (354)
Q Consensus 163 ~~gc~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~ 240 (354)
+.||+||++..||+|+.+. |+++|++|||.+.. +..|..... ...+++.+|. ++ ++
T Consensus 325 n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~----------------~~~C~~~~~----~~~~~i~~y~~i~--~~ 382 (489)
T PTZ00021 325 NNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDT----------------PELCNIDRC----KEKYKIKSYVSIP--ED 382 (489)
T ss_pred CCCCCCcchHhhhhhhhhccccCcccccCccCCC----------------CCccccccc----cccceeeeEEEec--HH
Confidence 6899999999999999775 89999999996531 112322110 1235566776 43 47
Q ss_pred HHHHHHHHcCCEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeCCCC---------CCccEEEEEccCCCCCCCC
Q 018568 241 DIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSD---------DGEDYWILANQWNRSWGAD 311 (354)
Q Consensus 241 ~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~ 311 (354)
+|+++|+.+|||+|+|++.++|++|++|||+++|+. .++|||+|||||+++ .+.+|||||||||++|||+
T Consensus 383 ~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~ 461 (489)
T PTZ00021 383 KFKEAIRFLGPISVSIAVSDDFAFYKGGIFDGECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEK 461 (489)
T ss_pred HHHHHHHhcCCeEEEEEeecccccCCCCcCCCCCCC-ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccC
Confidence 899999999999999999889999999999876544 469999999999432 1247999999999999999
Q ss_pred ceEEEEccC----CccccccceeEee
Q 018568 312 GYFKIKRGS----NECGIEEDVVAGL 333 (354)
Q Consensus 312 Gy~~i~~g~----n~cgI~~~~~~~~ 333 (354)
|||||+|+. |.|||..++..++
T Consensus 462 GY~rI~r~~~g~~n~CGI~t~a~yP~ 487 (489)
T PTZ00021 462 GFIRIETDENGLMKTCSLGTEAYVPL 487 (489)
T ss_pred eEEEEEcCCCCCCCCCCCcccceeEe
Confidence 999999986 5999999876643
No 5
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=9.8e-65 Score=492.56 Aligned_cols=272 Identities=29% Similarity=0.536 Sum_probs=211.8
Q ss_pred cccccccccccHHH--HHHHHHcCCCCCeEEecCCCCCCCCHHHHHHh-hCCCCCCCC----CC--------CCCCc-cc
Q 018568 28 VSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKHL-LGVKPTPKG----LL--------LGVPV-KT 91 (354)
Q Consensus 28 ~~~~~~~~~~~~~~--~i~~~N~~~~~~~~~~~N~~Fsd~t~~Ef~~~-~~~~~~~~~----~~--------~~~~~-~~ 91 (354)
..|...|+.+|.++ .|++||. +.+|++++| +|+|||.|||.++ ++...+... .. ..... ..
T Consensus 140 ~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN-~FsDlT~eEF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (448)
T PTZ00200 140 HAERLNRFLTFRNNYLEVKSHKG--DEPYSKEIN-KFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARHVSNPTYLKN 216 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--cCCeEEecc-ccccCCHHHHHHHhccCCCcccccccccccccccccccccccccc
Confidence 35566788899885 6888885 358999999 9999999999874 443221100 00 00000 00
Q ss_pred --------cc---CCCCCCCccccCcCCCCCCCcCccCCCC-CCCcHHHHHHHHHHHHHHHHHcCCCccccHHHHHHhcC
Q 018568 92 --------HD---KSLKLPKSFDARSAWPQCSTISRILDQG-HCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCG 159 (354)
Q Consensus 92 --------~~---~~~~lP~s~D~R~~w~~~~~v~pV~dQg-~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~ 159 (354)
.. ....+|++||||+. +.|+|||||| .||||||||+++++|++++++++..+.||+|+|+||..
T Consensus 217 ~~~~~~~~~~~~~~~~~~P~~~DWR~~----g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQqLvDC~~ 292 (448)
T PTZ00200 217 LKKAKNTDEDVKDPSKITGEGLDWRRA----DAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDT 292 (448)
T ss_pred cccccccccccccccccCCCCccCCCC----CCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHHHhhccC
Confidence 00 01136999999987 7899999999 99999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCchHHHHHHHHHcCccCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeEeCCCH
Q 018568 160 FLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDP 239 (354)
Q Consensus 160 ~~~~~gc~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~ 239 (354)
.+.||+||++..|++|++++|+++|++|||.+. ...|.... ...+.+.+|.+..+.
T Consensus 293 --~~~GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~~-----------------~~~C~~~~-----~~~~~i~~y~~~~~~ 348 (448)
T PTZ00200 293 --KSQGCSGGYPDTALEYVKNKGLSSSSDVPYLAK-----------------DGKCVVSS-----TKKVYIDSYLVAKGK 348 (448)
T ss_pred --ccCCCCCCcHHHHHHHHhhcCccccccCCCCCC-----------------CCCCcCCC-----CCeeEecceEecCHH
Confidence 367999999999999999999999999999654 12343322 123456777744444
Q ss_pred HHHHHHHHHcCCEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeCCC-CCCccEEEEEccCCCCCCCCceEEEEc
Q 018568 240 EDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTS-DDGEDYWILANQWNRSWGADGYFKIKR 318 (354)
Q Consensus 240 ~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~-~~g~~ywivkNSWG~~WG~~Gy~~i~~ 318 (354)
+.++++ +..|||+|+|+++++|+.|++|||+++|+.. ++|||+|||||.+ ++|.+|||||||||++||++|||||+|
T Consensus 349 ~~l~~~-l~~GPV~v~i~~~~~f~~Yk~GIy~~~C~~~-~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r 426 (448)
T PTZ00200 349 DVLNKS-LVISPTVVYIAVSRELLKYKSGVYNGECGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLER 426 (448)
T ss_pred HHHHHH-HhcCCEEEEeecccccccCCCCccccccCCC-CcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEe
Confidence 555554 4689999999998899999999998766544 7999999999954 467899999999999999999999999
Q ss_pred c---CCccccccceeEe
Q 018568 319 G---SNECGIEEDVVAG 332 (354)
Q Consensus 319 g---~n~cgI~~~~~~~ 332 (354)
+ .|.|||++.+..+
T Consensus 427 ~~~g~n~CGI~~~~~~P 443 (448)
T PTZ00200 427 TNEGTDKCGILTVGLTP 443 (448)
T ss_pred CCCCCCcCCccccceee
Confidence 5 5899999986654
No 6
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=3.4e-61 Score=437.20 Aligned_cols=228 Identities=55% Similarity=1.106 Sum_probs=186.1
Q ss_pred CCccccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCccccHHHHHHhcCCCCCCCCCCCchHHHHH
Q 018568 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 176 (354)
Q Consensus 99 P~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~ 176 (354)
|++||||++|.++..|+||+|||.||+|||||++++||++++|+++ ..+.||+|+|+||... .+.||+||++..|++
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~ 79 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWK 79 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHH
Confidence 8999999998777667799999999999999999999999999988 7899999999999863 357999999999999
Q ss_pred HHHHcCccCCCcccCCCCCC-CCC---CCCCCCCCCccccccccccccc-cccCceeEeeeeE-eCCCHHHHHHHHHHcC
Q 018568 177 YFVHHGVVTEECDPYFDSTG-CSH---PGCEPAYPTPKCVRKCVKKNQL-WRNSKHYSISAYR-INSDPEDIMAEIYKNG 250 (354)
Q Consensus 177 ~~~~~Gi~~e~~yPY~~~~~-~~~---~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~~i~~~~-~~~~~~~ik~~l~~~g 250 (354)
|++++|+++|++|||.+... |.. ..|. ....|...|...... +.... +.+..+. +..++++||++|+++|
T Consensus 80 ~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~-~~~~~~~~~~~~~~~ik~~l~~~G 155 (236)
T cd02620 80 YLTTTGVVTGGCQPYTIPPCGHHPEGPPPCC---GTPYCTPKCQDGCEKTYEEDK-HKGKSAYSVPSDETDIMKEIMTNG 155 (236)
T ss_pred HHHhcCCCcCCEecCcCCCCccCCCCCCCCC---CCCCCCCCCCcCCccccceee-eeecceeeeCCHHHHHHHHHHHCC
Confidence 99999999999999965421 111 1111 122233445433211 11122 3343433 5567899999999999
Q ss_pred CEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEccCCcccccccee
Q 018568 251 PVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 330 (354)
Q Consensus 251 PV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~ 330 (354)
||+++|.++++|+.|++|||+..++...++|||+||||| ++++++|||||||||++|||+|||||+||.|.|||+++++
T Consensus 156 Pv~v~i~~~~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg-~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~ 234 (236)
T cd02620 156 PVQAAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGWG-VENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVV 234 (236)
T ss_pred CeEEEEEechhhhhcCCcEEeecCCCCcCCeEEEEEEEe-ccCCeeEEEEEeCCCCCCCCCcEEEEEccCccccccccee
Confidence 999999998899999999998766666679999999999 5588999999999999999999999999999999999987
Q ss_pred Ee
Q 018568 331 AG 332 (354)
Q Consensus 331 ~~ 332 (354)
++
T Consensus 235 ~~ 236 (236)
T cd02620 235 AG 236 (236)
T ss_pred cC
Confidence 64
No 7
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1e-60 Score=436.31 Aligned_cols=223 Identities=40% Similarity=0.785 Sum_probs=181.9
Q ss_pred CCCccccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcCC------CccccHHHHHHhcCCCCCCCCCCCch
Q 018568 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM------NLSLSVNDLLACCGFLCGDGCDGGYP 171 (354)
Q Consensus 98 lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~------~~~lS~q~l~~c~~~~~~~gc~GG~~ 171 (354)
||++||||+.|+++..|+||||||.||+|||||++++||++++|+++. .+.||+|+|++|.. .+.||+||++
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~--~~~GC~GG~~ 78 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ--YSQGCDGGFP 78 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC--CCCCCCCCCH
Confidence 799999999976777899999999999999999999999999998875 78999999999985 3579999999
Q ss_pred HHHHHHHHHcCccCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeEeCCCHHHHHHHHHHcCC
Q 018568 172 ISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGP 251 (354)
Q Consensus 172 ~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~gP 251 (354)
..|++|++++|+++|++|||... ....|.... ..|. .+.......+.++....++++||++|+++||
T Consensus 79 ~~a~~~~~~~Gi~~e~~yPY~~~---~~~~C~~~~------~~~~----~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GP 145 (243)
T cd02621 79 FLVGKFAEDFGIVTEDYFPYTAD---DDRPCKASP------SECR----RYYFSDYNYVGGCYGCTNEDEMKWEIYRNGP 145 (243)
T ss_pred HHHHHHHHhcCcCCCceeCCCCC---CCCCCCCCc------cccc----cccccceeEcccccccCCHHHHHHHHHHcCC
Confidence 99999999999999999999651 011121100 0010 0111122233333333578999999999999
Q ss_pred EEEEEEecccccccCCceeecCC----C-C--------ccCCeeEEEEEeCCCC-CCccEEEEEccCCCCCCCCceEEEE
Q 018568 252 VEVSFTVYEDFAHYKSGVYKHIT----G-D--------VMGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIK 317 (354)
Q Consensus 252 V~v~~~~~~~f~~y~~Giy~~~~----~-~--------~~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~ 317 (354)
|+++|++.++|++|++|||+... + . ..++|||+|||||++. ++.+|||||||||++|||+|||||+
T Consensus 146 v~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~ 225 (243)
T cd02621 146 IVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIR 225 (243)
T ss_pred EEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEe
Confidence 99999999899999999998752 1 1 2479999999999543 4889999999999999999999999
Q ss_pred ccCCccccccceeEeecc
Q 018568 318 RGSNECGIEEDVVAGLPS 335 (354)
Q Consensus 318 ~g~n~cgI~~~~~~~~p~ 335 (354)
||.|+|||++.+++++|.
T Consensus 226 ~~~~~cgi~~~~~~~~~~ 243 (243)
T cd02621 226 RGTNECGIESQAVFAYPI 243 (243)
T ss_pred cCCcccCcccceEeeccC
Confidence 999999999999999984
No 8
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=6.2e-60 Score=429.76 Aligned_cols=224 Identities=36% Similarity=0.740 Sum_probs=185.9
Q ss_pred CCCccccCcCCCCCCCcCccCCCC---CCCcHHHHHHHHHHHHHHHHHcC---CCccccHHHHHHhcCCCCCCCCCCCch
Q 018568 98 LPKSFDARSAWPQCSTISRILDQG---HCGSCWAFGAVEALSDRFCIHFG---MNLSLSVNDLLACCGFLCGDGCDGGYP 171 (354)
Q Consensus 98 lP~s~D~R~~w~~~~~v~pV~dQg---~cGsCwAfA~~~~le~~~~i~~~---~~~~lS~q~l~~c~~~~~~~gc~GG~~ 171 (354)
||++||||+.+ +..+++|||||| .||||||||++++||++++|+++ ..+.||+|+|+||+. +.||+||++
T Consensus 1 lP~~~Dwr~~~-~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~ 76 (239)
T cd02698 1 LPKSWDWRNVN-GVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDP 76 (239)
T ss_pred CCCCcccccCC-CCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCH
Confidence 79999999873 223799999998 99999999999999999999876 367899999999986 579999999
Q ss_pred HHHHHHHHHcCccCCCcccCCCCC-CCCC-CCCCCCCCCcccc--ccccccccccccCceeEeeeeEeCCCHHHHHHHHH
Q 018568 172 ISAWRYFVHHGVVTEECDPYFDST-GCSH-PGCEPAYPTPKCV--RKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIY 247 (354)
Q Consensus 172 ~~a~~~~~~~Gi~~e~~yPY~~~~-~~~~-~~~~~~~~~~~~~--~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~ 247 (354)
..|++|++++|+++|++|||.... .|.. +.| ..|. ..|.... ....+.+..|..-.++++||++|+
T Consensus 77 ~~a~~~~~~~Gl~~e~~yPY~~~~~~C~~~~~~------~~c~~~~~c~~~~----~~~~~~i~~~~~~~~~~~i~~~l~ 146 (239)
T cd02698 77 GGVYEYAHKHGIPDETCNPYQAKDGECNPFNRC------GTCNPFGECFAIK----NYTLYFVSDYGSVSGRDKMMAEIY 146 (239)
T ss_pred HHHHHHHHHcCcCCCCeeCCcCCCCCCcCCCCC------CCcccCccccccc----ccceEEeeeceecCCHHHHHHHHH
Confidence 999999999999999999996542 2432 111 1121 1333211 123456777762245789999999
Q ss_pred HcCCEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEccC-----Cc
Q 018568 248 KNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS-----NE 322 (354)
Q Consensus 248 ~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~-----n~ 322 (354)
++|||+++|.++++|+.|++|||+..++...++|||+|||||+++++++|||||||||++|||+|||||+||. |+
T Consensus 147 ~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~ 226 (239)
T cd02698 147 ARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYN 226 (239)
T ss_pred HcCCEEEEEEecccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccc
Confidence 9999999999998999999999988776666899999999995444899999999999999999999999999 99
Q ss_pred cccccceeEeecc
Q 018568 323 CGIEEDVVAGLPS 335 (354)
Q Consensus 323 cgI~~~~~~~~p~ 335 (354)
||||+++++++|.
T Consensus 227 ~~i~~~~~~~~~~ 239 (239)
T cd02698 227 LAIEEDCAWADPI 239 (239)
T ss_pred cccccceEEEeeC
Confidence 9999999999984
No 9
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=2.8e-57 Score=450.52 Aligned_cols=240 Identities=29% Similarity=0.530 Sum_probs=186.6
Q ss_pred CCCCCCccccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcCC----------CccccHHHHHHhcCCCCCC
Q 018568 95 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM----------NLSLSVNDLLACCGFLCGD 164 (354)
Q Consensus 95 ~~~lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~----------~~~lS~q~l~~c~~~~~~~ 164 (354)
..+||++||||+.|..+++++||+|||.||||||||++++||++++|+++. ...||+|+|+||+. .+.
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~--~nq 455 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF--YDQ 455 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC--CCC
Confidence 358999999999998888999999999999999999999999999998642 13799999999986 368
Q ss_pred CCCCCchHHHHHHHHHcCccCCCcccCCCC-CCCCCCCCCCCCC---------------Ccccccccccc---ccccccC
Q 018568 165 GCDGGYPISAWRYFVHHGVVTEECDPYFDS-TGCSHPGCEPAYP---------------TPKCVRKCVKK---NQLWRNS 225 (354)
Q Consensus 165 gc~GG~~~~a~~~~~~~Gi~~e~~yPY~~~-~~~~~~~~~~~~~---------------~~~~~~~c~~~---~~~~~~~ 225 (354)
||+||++..|++|++++|+++|++|||.+. ..|....+..... .+.|...|... ..... .
T Consensus 456 GC~GG~~~~A~kya~~~GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 534 (693)
T PTZ00049 456 GCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSE-P 534 (693)
T ss_pred CcCCCcHHHHHHHHHHCCCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccc-c
Confidence 999999999999999999999999999654 3365422111000 01111122110 00001 1
Q ss_pred ceeEeeeeE-e--------CCCHHHHHHHHHHcCCEEEEEEecccccccCCceeecC-------CCC-------------
Q 018568 226 KHYSISAYR-I--------NSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI-------TGD------------- 276 (354)
Q Consensus 226 ~~~~i~~~~-~--------~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~-------~~~------------- 276 (354)
..+.++.|. + ..++++||++|+++|||+|+|+++++|++|++|||+.+ |..
T Consensus 535 ~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 535 ARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred cceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 223334443 2 13688999999999999999999889999999999853 211
Q ss_pred -ccCCeeEEEEEeCCCC-CCc--cEEEEEccCCCCCCCCceEEEEccCCccccccceeEeeccCC
Q 018568 277 -VMGGHAVKLIGWGTSD-DGE--DYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 337 (354)
Q Consensus 277 -~~~~Hav~iVGyg~~~-~g~--~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~~~~p~~~ 337 (354)
...+|||+|||||.++ +|. +|||||||||++||++|||||.||.|.||||++++++.|++.
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~pd~~ 679 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEPDFS 679 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEeeecc
Confidence 1369999999999542 453 799999999999999999999999999999999999999875
No 10
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=7e-57 Score=402.30 Aligned_cols=205 Identities=37% Similarity=0.740 Sum_probs=178.5
Q ss_pred CCccccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccccHHHHHHhcCCCCCCCCCCCchHHHHHHH
Q 018568 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYF 178 (354)
Q Consensus 99 P~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~ 178 (354)
|++||||+. +.++||+|||.||+|||||++++||++++++++...+||+|+|++|... .+.+|.||++..|++++
T Consensus 1 P~~~d~r~~----~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~ 75 (210)
T cd02248 1 PESVDWREK----GAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYV 75 (210)
T ss_pred CCcccCCcC----CCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHH
Confidence 889999987 5599999999999999999999999999999998999999999999863 35799999999999999
Q ss_pred HHcCccCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeE-eCC-CHHHHHHHHHHcCCEEEEE
Q 018568 179 VHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INS-DPEDIMAEIYKNGPVEVSF 256 (354)
Q Consensus 179 ~~~Gi~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~-~~~~ik~~l~~~gPV~v~~ 256 (354)
+++|+++|++|||... ...|..... ...+++..|. +.. ++++||++|+++|||+++|
T Consensus 76 ~~~Gi~~e~~yPY~~~-----------------~~~C~~~~~----~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~ 134 (210)
T cd02248 76 KNGGLASESDYPYTGK-----------------DGTCKYNSS----KVGAKITGYSNVPPGDEEALKAALANYGPVSVAI 134 (210)
T ss_pred HHCCcCccccCCccCC-----------------CCCccCCCC----cccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEE
Confidence 9999999999999543 123333221 3456777777 443 5799999999999999999
Q ss_pred EecccccccCCceeecCCC-CccCCeeEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEccCCcccccccee
Q 018568 257 TVYEDFAHYKSGVYKHITG-DVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 330 (354)
Q Consensus 257 ~~~~~f~~y~~Giy~~~~~-~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~ 330 (354)
.+.++|+.|++|||..+++ ...++|||+||||| ++.+.+|||||||||++||++|||||+|+.|.|||++++.
T Consensus 135 ~~~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~-~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~ 208 (210)
T cd02248 135 DASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYG-TENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYAS 208 (210)
T ss_pred ecCcccccCCCCceeCCCCCCCcCCEEEEEEEEe-ecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeee
Confidence 9999999999999998766 55689999999999 5568899999999999999999999999999999997654
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=4.1e-56 Score=438.14 Aligned_cols=223 Identities=27% Similarity=0.516 Sum_probs=182.1
Q ss_pred CCCCCCccccCcCCCCCCCcCccCCCCC---CCcHHHHHHHHHHHHHHHHHcC------CCccccHHHHHHhcCCCCCCC
Q 018568 95 SLKLPKSFDARSAWPQCSTISRILDQGH---CGSCWAFGAVEALSDRFCIHFG------MNLSLSVNDLLACCGFLCGDG 165 (354)
Q Consensus 95 ~~~lP~s~D~R~~w~~~~~v~pV~dQg~---cGsCwAfA~~~~le~~~~i~~~------~~~~lS~q~l~~c~~~~~~~g 165 (354)
..+||++||||+.+ +.++++||||||. ||||||||++++||++++|+++ ..+.||+|+|+||+. .+.|
T Consensus 202 ~~~LP~sfDWR~~g-g~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~--~n~G 278 (548)
T PTZ00364 202 GDPPPAAWSWGDVG-GASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ--YGQG 278 (548)
T ss_pred ccCCCCccccCcCC-CCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC--CCCC
Confidence 46799999999972 3347999999999 9999999999999999999984 468899999999985 3689
Q ss_pred CCCCchHHHHHHHHHcCccCCCcc--cCCCCCCCCCCCCCCCCCCccccccccccc--cccccCceeEeeeeE-eCCCHH
Q 018568 166 CDGGYPISAWRYFVHHGVVTEECD--PYFDSTGCSHPGCEPAYPTPKCVRKCVKKN--QLWRNSKHYSISAYR-INSDPE 240 (354)
Q Consensus 166 c~GG~~~~a~~~~~~~Gi~~e~~y--PY~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~~~~~i~~~~-~~~~~~ 240 (354)
|+||++..|++|++++|+++|++| ||.+..+ ..+ .|+... ..+.......+.+|. +..+++
T Consensus 279 CdGG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg-~~~-------------~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~ 344 (548)
T PTZ00364 279 CAGGFPEEVGKFAETFGILTTDSYYIPYDSGDG-VER-------------ACKTRRPSRRYYFTNYGPLGGYYGAVTDPD 344 (548)
T ss_pred CCCCcHHHHHHHHHhCCcccccccCCCCCCCCC-CCC-------------CCCCCcccceeeeeeeEEecceeecCCcHH
Confidence 999999999999999999999999 9965421 101 232211 111112233455554 445778
Q ss_pred HHHHHHHHcCCEEEEEEecccccccCCceeecC---------CC----------CccCCeeEEEEEeCCCCCCccEEEEE
Q 018568 241 DIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI---------TG----------DVMGGHAVKLIGWGTSDDGEDYWILA 301 (354)
Q Consensus 241 ~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~---------~~----------~~~~~Hav~iVGyg~~~~g~~ywivk 301 (354)
+||++|+++|||+|+|+++++|+.|++|||.+. ++ ....+|||+|||||.+++|.+|||||
T Consensus 345 ~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVK 424 (548)
T PTZ00364 345 EIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVL 424 (548)
T ss_pred HHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEE
Confidence 999999999999999999989999999998631 11 12469999999999656788999999
Q ss_pred ccCCC--CCCCCceEEEEccCCccccccceeEeec
Q 018568 302 NQWNR--SWGADGYFKIKRGSNECGIEEDVVAGLP 334 (354)
Q Consensus 302 NSWG~--~WG~~Gy~~i~~g~n~cgI~~~~~~~~p 334 (354)
||||+ +|||+|||||+||.|+||||++++++.|
T Consensus 425 NSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~ 459 (548)
T PTZ00364 425 DPWGSRRSWCDGGTRKIARGVNAYNIESEVVVMYW 459 (548)
T ss_pred CCCCCCCCcccCCeEEEEcCCCcccccceeeeeee
Confidence 99999 9999999999999999999999999988
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1.2e-54 Score=389.47 Aligned_cols=212 Identities=43% Similarity=0.816 Sum_probs=175.1
Q ss_pred CCCccccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHc-CCCccccHHHHHHhcCCCCCCCCCCCchHHHHH
Q 018568 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF-GMNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 176 (354)
Q Consensus 98 lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~-~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~ 176 (354)
||++||||+.+ +.++||+|||.||+|||||+++++|++++++. +..+.||+|+|++|.. ..+.+|+||++..|++
T Consensus 1 lP~~~D~r~~~---~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~ 76 (219)
T PF00112_consen 1 LPKSFDWRDKG---GRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALK 76 (219)
T ss_dssp STSSEEGGGTT---TCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHH
T ss_pred CCCCEecccCC---CCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccce
Confidence 79999999952 35999999999999999999999999999999 7899999999999986 3457999999999999
Q ss_pred HHHH-cCccCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeE-eCC-CHHHHHHHHHHcCCEE
Q 018568 177 YFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INS-DPEDIMAEIYKNGPVE 253 (354)
Q Consensus 177 ~~~~-~Gi~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~-~~~~ik~~l~~~gPV~ 253 (354)
++++ +|+++|++|||.... . ..|...... ...+++..|. +.. ++++||++|+++|||+
T Consensus 77 ~~~~~~Gi~~e~~~pY~~~~------------~----~~c~~~~~~---~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~ 137 (219)
T PF00112_consen 77 YIKNNNGIVTEEDYPYNGNE------------N----PTCKSKKSN---SYYVKIKGYGKVKDNDIEDIKKALMKYGPVV 137 (219)
T ss_dssp HHHHHTSBEBTTTS--SSSS------------S----CSSCHSGGG---EEEBEESEEEEEESTCHHHHHHHHHHHSSEE
T ss_pred eecccCcccccccccccccc------------c----ccccccccc---cccccccccccccccchhHHHHHHhhCceee
Confidence 9999 999999999996431 0 234433211 1135667776 443 6899999999999999
Q ss_pred EEEEecc-cccccCCceeecCCC-CccCCeeEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEccCC-cccccccee
Q 018568 254 VSFTVYE-DFAHYKSGVYKHITG-DVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSN-ECGIEEDVV 330 (354)
Q Consensus 254 v~~~~~~-~f~~y~~Giy~~~~~-~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n-~cgI~~~~~ 330 (354)
+++.+.+ +|..|++|||..+.+ ...++|||+||||| ++.+++|||||||||++||++|||||+|+.+ +|||+++++
T Consensus 138 ~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~-~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~ 216 (219)
T PF00112_consen 138 ASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYD-DENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAV 216 (219)
T ss_dssp EEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEE-EETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEE
T ss_pred eeeeccccccccccceeeeccccccccccccccccccc-cccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceee
Confidence 9999998 699999999998744 45789999999999 5568999999999999999999999999987 999999999
Q ss_pred Eee
Q 018568 331 AGL 333 (354)
Q Consensus 331 ~~~ 333 (354)
+++
T Consensus 217 ~~~ 219 (219)
T PF00112_consen 217 YPI 219 (219)
T ss_dssp EEE
T ss_pred ecC
Confidence 874
No 13
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=5.9e-54 Score=384.25 Aligned_cols=299 Identities=33% Similarity=0.648 Sum_probs=239.2
Q ss_pred cccccccccHHHHHHHHHcCCCCCeEEecCCCCCCCCHHH-HHHhhCCCCCCCCCCCCCCcc-cccCCCCCCCccccCcC
Q 018568 30 KLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQ-FKHLLGVKPTPKGLLLGVPVK-THDKSLKLPKSFDARSA 107 (354)
Q Consensus 30 ~~~~~~~~~~~~~i~~~N~~~~~~~~~~~N~~Fsd~t~~E-f~~~~~~~~~~~~~~~~~~~~-~~~~~~~lP~s~D~R~~ 107 (354)
+.++...+...++|+++|+ .+.+|.++...+|..||.++ |+-.||..+++.+...+.... ..+...+||+.||.|++
T Consensus 140 KCdq~~CLv~Pd~iE~in~-G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~~l~p~~~LPE~F~As~K 218 (470)
T KOG1544|consen 140 KCDQEPCLVDPDMIEAINQ-GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYTVLNPGEVLPEAFEASEK 218 (470)
T ss_pred ecCCceeecCHHHHHHHhc-CCccccccchhhhhcccccccceeeecccCchhhhhhHHhHhhccCcccccchhhhhhhc
Confidence 5677788999999999999 78999999989999999877 555788876655443322211 22334789999999999
Q ss_pred CCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCccccHHHHHHhcCCCCCCCCCCCchHHHHHHHHHcCccC
Q 018568 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVT 185 (354)
Q Consensus 108 w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~~~~Gi~~ 185 (354)
|++. +.||.|||+|++.|||+++++..++++|++. ....||+|+|++|.. ....||+||+...|+=|+.+.|++.
T Consensus 219 Wp~l--iH~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~-h~q~GC~gG~lDRAWWYlRKrGvVs 295 (470)
T KOG1544|consen 219 WPNL--IHEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDT-HQQQGCRGGRLDRAWWYLRKRGVVS 295 (470)
T ss_pred CCcc--ccCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhh-hhhccCccCcccchheeeecccccc
Confidence 9965 9999999999999999999999999999875 668899999999986 4468999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCCCCC-----CccccccccccccccccCceeE-eeeeEeCCCHHHHHHHHHHcCCEEEEEEec
Q 018568 186 EECDPYFDSTGCSHPGCEPAYP-----TPKCVRKCVKKNQLWRNSKHYS-ISAYRINSDPEDIMAEIYKNGPVEVSFTVY 259 (354)
Q Consensus 186 e~~yPY~~~~~~~~~~~~~~~~-----~~~~~~~c~~~~~~~~~~~~~~-i~~~~~~~~~~~ik~~l~~~gPV~v~~~~~ 259 (354)
..||||...+.-..+.|.-... .-.-.+.|..... .....|+ ...|++.+++++|+++|+++|||-+.|.|.
T Consensus 296 dhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~--~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VH 373 (470)
T KOG1544|consen 296 DHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYV--NSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVH 373 (470)
T ss_pred cccccccCCCCCCCCCceeeccccCcccccccCcCCCccc--ccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhh
Confidence 9999997654444455532211 1111112333221 1113344 346778999999999999999999999999
Q ss_pred ccccccCCceeecCCC--------CccCCeeEEEEEeCCCC--C--CccEEEEEccCCCCCCCCceEEEEccCCcccccc
Q 018568 260 EDFAHYKSGVYKHITG--------DVMGGHAVKLIGWGTSD--D--GEDYWILANQWNRSWGADGYFKIKRGSNECGIEE 327 (354)
Q Consensus 260 ~~f~~y~~Giy~~~~~--------~~~~~Hav~iVGyg~~~--~--g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~ 327 (354)
++|+.|++|||.+.+. ...+.|+|.|.|||++. + ..+|||..||||+.|||+|||||-||.|+|.||+
T Consensus 374 EDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEs 453 (470)
T KOG1544|consen 374 EDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIES 453 (470)
T ss_pred hhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhH
Confidence 9999999999987542 13578999999999532 2 3579999999999999999999999999999999
Q ss_pred ceeEeec
Q 018568 328 DVVAGLP 334 (354)
Q Consensus 328 ~~~~~~p 334 (354)
.+++|+-
T Consensus 454 fvIgAWG 460 (470)
T KOG1544|consen 454 FVIGAWG 460 (470)
T ss_pred hhhhhhh
Confidence 9999976
No 14
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=5.1e-50 Score=347.38 Aligned_cols=168 Identities=47% Similarity=0.982 Sum_probs=147.8
Q ss_pred CCCccccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccccHHHHHHhcCCCCCCCCCCCchHHHHHH
Q 018568 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY 177 (354)
Q Consensus 98 lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~ 177 (354)
||++||||+. +.++||||||.||+|||||+++++|++++++++..++||+|+|++|... .+.||+||++..|++|
T Consensus 1 lP~~~D~R~~----~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~ 75 (174)
T smart00645 1 LPESFDWRKK----GAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEY 75 (174)
T ss_pred CCCcCccccc----CCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHH
Confidence 7999999997 4599999999999999999999999999999998999999999999873 3569999999999999
Q ss_pred HHHc-CccCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeEeCCCHHHHHHHHHHcCCEEEEE
Q 018568 178 FVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSF 256 (354)
Q Consensus 178 ~~~~-Gi~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~gPV~v~~ 256 (354)
++++ |+++|++|||. . ++.+
T Consensus 76 ~~~~~Gi~~e~~~PY~--------------------------------~---------------------------~~~~ 96 (174)
T smart00645 76 IKKNGGLETESCYPYT--------------------------------G---------------------------SVAI 96 (174)
T ss_pred HHHcCCcccccccCcc--------------------------------c---------------------------EEEE
Confidence 9998 99999999991 0 4555
Q ss_pred EecccccccCCceeecC-CCCccCCeeEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEccC-Ccccccccee
Q 018568 257 TVYEDFAHYKSGVYKHI-TGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS-NECGIEEDVV 330 (354)
Q Consensus 257 ~~~~~f~~y~~Giy~~~-~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~-n~cgI~~~~~ 330 (354)
.+. +|++|++|||+.+ +....++|+|+|||||.++++++|||||||||+.||++|||||+|+. |+|||+....
T Consensus 97 ~~~-~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~ 171 (174)
T smart00645 97 DAS-DFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA 171 (174)
T ss_pred Ecc-cccCCcCeEECCCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeee
Confidence 554 6999999999875 43344799999999994447889999999999999999999999998 9999977653
No 15
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=6.2e-47 Score=340.18 Aligned_cols=197 Identities=32% Similarity=0.582 Sum_probs=161.0
Q ss_pred ccccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCccccHHHHHHhcCCCC---CCCCCCCchHHHH
Q 018568 101 SFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLC---GDGCDGGYPISAW 175 (354)
Q Consensus 101 s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~---~~gc~GG~~~~a~ 175 (354)
++|||+. + ++||+|||.||+|||||+++++|++++++.+ ..+.||+|+|++|..... ..+|.||.+..++
T Consensus 1 ~~d~r~~----~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~ 75 (223)
T cd02619 1 SVDLRPL----R-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSAL 75 (223)
T ss_pred CCcchhc----C-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHH
Confidence 4799986 5 8999999999999999999999999999988 889999999999986332 2689999999999
Q ss_pred H-HHHHcCccCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeE-eC-CCHHHHHHHHHHcCCE
Q 018568 176 R-YFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPV 252 (354)
Q Consensus 176 ~-~~~~~Gi~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~-~~~~~ik~~l~~~gPV 252 (354)
. +++++|+++|++|||..... .|...|.. ......+++..|. +. .++++||++|+++|||
T Consensus 76 ~~~~~~~Gi~~e~~~Py~~~~~-------------~~~~~~~~----~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv 138 (223)
T cd02619 76 LKLVALKGIPPEEDYPYGAESD-------------GEEPKSEA----ALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPV 138 (223)
T ss_pred HHHHHHcCCCccccCCCCCCCC-------------CCCCCCcc----chhhcceeecceeEeCchhHHHHHHHHHHCCCE
Confidence 8 88899999999999965411 11111100 1113446677776 43 3578999999999999
Q ss_pred EEEEEecccccccCCceee------cCCCCccCCeeEEEEEeCCCCC--CccEEEEEccCCCCCCCCceEEEEccC
Q 018568 253 EVSFTVYEDFAHYKSGVYK------HITGDVMGGHAVKLIGWGTSDD--GEDYWILANQWNRSWGADGYFKIKRGS 320 (354)
Q Consensus 253 ~v~~~~~~~f~~y~~Giy~------~~~~~~~~~Hav~iVGyg~~~~--g~~ywivkNSWG~~WG~~Gy~~i~~g~ 320 (354)
+++|.+.++|..|++|+|. ..++...++|||+||||| ++. +++|||||||||++||++||+||+|+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~-~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 139 VAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYD-DNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred EEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeec-CCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 9999999999999999873 223455689999999999 444 789999999999999999999999984
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=4.8e-46 Score=379.87 Aligned_cols=225 Identities=23% Similarity=0.409 Sum_probs=165.6
Q ss_pred CCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccccHHHHHHhcCCCCCCCCCCCc-hHHHHHHHHHcC-ccC
Q 018568 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGY-PISAWRYFVHHG-VVT 185 (354)
Q Consensus 108 w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc~GG~-~~~a~~~~~~~G-i~~ 185 (354)
++.|....||||||.||+|||||+++++|++++++++..+.||+|+|+||+....+.||.||+ +..++.|++++| +++
T Consensus 538 ~~sC~s~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLpt 617 (1004)
T PTZ00462 538 ENNCISKIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPA 617 (1004)
T ss_pred CCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcc
Confidence 477766789999999999999999999999999999999999999999998643457999997 445669998875 788
Q ss_pred CCcccCCCC---CCCCCCCCCCCCCCccccccccccccc--c--ccCceeEeeeeE-eCC-----C----HHHHHHHHHH
Q 018568 186 EECDPYFDS---TGCSHPGCEPAYPTPKCVRKCVKKNQL--W--RNSKHYSISAYR-INS-----D----PEDIMAEIYK 248 (354)
Q Consensus 186 e~~yPY~~~---~~~~~~~~~~~~~~~~~~~~c~~~~~~--~--~~~~~~~i~~~~-~~~-----~----~~~ik~~l~~ 248 (354)
|++|||... ..|......+ ..|...... + .......+.+|. +.. + +++||++|++
T Consensus 618 ESdYPYt~k~~~g~Cp~~~~~w--------~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~ 689 (1004)
T PTZ00462 618 DSNYLYNYTKVGEDCPDEEDHW--------MNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMN 689 (1004)
T ss_pred cccCCCccCCCCCCCCCCcccc--------cccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHh
Confidence 999999542 1132110000 000000000 0 001122334444 221 1 4689999999
Q ss_pred cCCEEEEEEecccccccC-CceeecC-CCCccCCeeEEEEEeCCC----CCCccEEEEEccCCCCCCCCceEEEEc-cCC
Q 018568 249 NGPVEVSFTVYEDFAHYK-SGVYKHI-TGDVMGGHAVKLIGWGTS----DDGEDYWILANQWNRSWGADGYFKIKR-GSN 321 (354)
Q Consensus 249 ~gPV~v~~~~~~~f~~y~-~Giy~~~-~~~~~~~Hav~iVGyg~~----~~g~~ywivkNSWG~~WG~~Gy~~i~~-g~n 321 (354)
+|||+|+|++. +|+.|. +|||... |+...++|||+|||||.+ .++++|||||||||+.|||+|||||.| |.|
T Consensus 690 kGPVaV~IdAs-df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n 768 (1004)
T PTZ00462 690 KGSVIAYIKAE-NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPS 768 (1004)
T ss_pred cCCEEEEEEee-hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCC
Confidence 99999999985 688884 8987654 444457999999999953 125789999999999999999999998 789
Q ss_pred ccccccceeEeeccCCCccc
Q 018568 322 ECGIEEDVVAGLPSSKNLVK 341 (354)
Q Consensus 322 ~cgI~~~~~~~~p~~~~~~~ 341 (354)
.|||.....+++..+.-.+.
T Consensus 769 ~CGin~i~t~~~fn~d~~~~ 788 (1004)
T PTZ00462 769 HCEDNFIHSVVIFNIDLPKN 788 (1004)
T ss_pred CCccchheeeeeEeeccccc
Confidence 99999888888777654443
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-30 Score=240.52 Aligned_cols=203 Identities=29% Similarity=0.404 Sum_probs=133.9
Q ss_pred CCCCCCccccCcCCCCCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccccHHHHHHhcCCCCCCCC-----CCC
Q 018568 95 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGC-----DGG 169 (354)
Q Consensus 95 ~~~lP~s~D~R~~w~~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gc-----~GG 169 (354)
...+|+.||||+. +.|+||||||.||+||||++++++|+.+.-.. ...+|+..+..........+| +||
T Consensus 96 ~~s~~~~fd~r~~----g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g 169 (372)
T COG4870 96 SASLPSYFDRRDE----GKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGG 169 (372)
T ss_pred cccchhheeeecc----CCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCC
Confidence 3569999999998 77999999999999999999999999864332 566666655544332222233 367
Q ss_pred chHHHHHHHHH-cCccCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeE----eCCCHHHHHH
Q 018568 170 YPISAWRYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR----INSDPEDIMA 244 (354)
Q Consensus 170 ~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~----~~~~~~~ik~ 244 (354)
....+..|+.+ .|.+.+.+.||..... ..+ +|.+. .++.....+. -..+...||+
T Consensus 170 ~~~m~~a~l~e~sgpv~et~d~y~~~s~----------~~~----~~~p~------~k~~~~~~~i~~~~~~LdnG~i~~ 229 (372)
T COG4870 170 NADMSAAYLTEWSGPVYETDDPYSENSY----------FSP----TNLPV------TKHVQEAQIIPSRKKYLDNGNIKA 229 (372)
T ss_pred ccccccccccccCCcchhhcCccccccc----------cCC----cCCch------hhccccceecccchhhhcccchHH
Confidence 76766667655 5889999999954311 001 11111 1111111111 1124456899
Q ss_pred HHHHcCCEEEEEEec-ccccccCCceeecCCCCccCCeeEEEEEeCCCC---------CCccEEEEEccCCCCCCCCceE
Q 018568 245 EIYKNGPVEVSFTVY-EDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSD---------DGEDYWILANQWNRSWGADGYF 314 (354)
Q Consensus 245 ~l~~~gPV~v~~~~~-~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~Gy~ 314 (354)
++..+|-+...|.+. ..+....-+.|..... ...+|||+|||||+.- .|.++||||||||++||++|||
T Consensus 230 ~~~~yg~~s~~~~id~~~~~~~~~~~~~~~s~-~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYf 308 (372)
T COG4870 230 MFGFYGAVSSSMYIDATNSLGICIPYPYVDSG-ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYF 308 (372)
T ss_pred HHhhhccccceeEEecccccccccCCCCCCcc-ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceE
Confidence 998899888666543 1222222334433333 5579999999999532 3678999999999999999999
Q ss_pred EEEccCCccc
Q 018568 315 KIKRGSNECG 324 (354)
Q Consensus 315 ~i~~g~n~cg 324 (354)
||+|..-.-|
T Consensus 309 wisY~ya~~g 318 (372)
T COG4870 309 WISYYYALNG 318 (372)
T ss_pred EEEeeecccc
Confidence 9999754444
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.91 E-value=5.8e-24 Score=206.05 Aligned_cols=204 Identities=24% Similarity=0.336 Sum_probs=134.6
Q ss_pred cCccCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCccccHHHHHH----------------hcC-CC---------CCCCC
Q 018568 114 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLA----------------CCG-FL---------CGDGC 166 (354)
Q Consensus 114 v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~-~~~~lS~q~l~~----------------c~~-~~---------~~~gc 166 (354)
..||+||++.|.||.||+...++..+..+.+ ..++||+.++.. +.. +. .....
T Consensus 54 ~~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~ 133 (437)
T cd00585 54 TEPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQN 133 (437)
T ss_pred CCCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcC
Confidence 3589999999999999999999998877544 789999988765 211 00 13457
Q ss_pred CCCchHHHHHHHHHcCccCCCcccCCCCCCCCC-----------------------------------------------
Q 018568 167 DGGYPISAWRYFVHHGVVTEECDPYFDSTGCSH----------------------------------------------- 199 (354)
Q Consensus 167 ~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~----------------------------------------------- 199 (354)
+||.-..+...++++|+++.+.||-+..+.-+.
T Consensus 134 DGGqw~m~~~li~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 134 DGGQWDMLVNLIEKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCCchHHHHHHHHHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999632211000
Q ss_pred ----CCCC--C-----------C-CCCccc--cc--cccc-------cccc--cccCceeEee-----------eeEeCC
Q 018568 200 ----PGCE--P-----------A-YPTPKC--VR--KCVK-------KNQL--WRNSKHYSIS-----------AYRINS 237 (354)
Q Consensus 200 ----~~~~--~-----------~-~~~~~~--~~--~c~~-------~~~~--~~~~~~~~i~-----------~~~~~~ 237 (354)
|+-. - . .-||.- .. .|.. ..+. ....+.|.+. .|. ..
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~-Nv 292 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYL-NV 292 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEE-ec
Confidence 0000 0 0 001100 00 0000 0000 0000111111 111 11
Q ss_pred CHHHHH----HHHHHcCCEEEEEEecccccccCCceeecC---------------------CCCccCCeeEEEEEeCCCC
Q 018568 238 DPEDIM----AEIYKNGPVEVSFTVYEDFAHYKSGVYKHI---------------------TGDVMGGHAVKLIGWGTSD 292 (354)
Q Consensus 238 ~~~~ik----~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~---------------------~~~~~~~Hav~iVGyg~~~ 292 (354)
..+.++ ++|.+++||.+++++. .|+.|++||++.. ++....+|||+|||||.++
T Consensus 293 p~d~l~~~~~~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~ 371 (437)
T cd00585 293 PMDVLKKAAIAQLKDGEPVWFGCDVG-KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDE 371 (437)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEcC-hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecC
Confidence 334555 6777889999999996 5779999999543 2233468999999999766
Q ss_pred CCc-cEEEEEccCCCCCCCCceEEEEcc
Q 018568 293 DGE-DYWILANQWNRSWGADGYFKIKRG 319 (354)
Q Consensus 293 ~g~-~ywivkNSWG~~WG~~Gy~~i~~g 319 (354)
+|+ .||+||||||++||++||++|+++
T Consensus 372 ~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 372 DGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CCCcceEEEEcccCCCCCCCcceehhHH
Confidence 676 699999999999999999999975
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.66 E-value=9.8e-16 Score=148.95 Aligned_cols=205 Identities=22% Similarity=0.328 Sum_probs=112.9
Q ss_pred cCccCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCccccHHHHH----------------HhcCCC----------CCCCC
Q 018568 114 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLL----------------ACCGFL----------CGDGC 166 (354)
Q Consensus 114 v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~-~~~~lS~q~l~----------------~c~~~~----------~~~gc 166 (354)
..||.||.+.|.||.||+...++..+..+.+ ..++||+.++. ++.... .....
T Consensus 55 ~~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~ 134 (438)
T PF03051_consen 55 TGPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVS 134 (438)
T ss_dssp S-S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-
T ss_pred cCCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCC
Confidence 3589999999999999999999999988877 88999998875 222100 01346
Q ss_pred CCCchHHHHHHHHHcCccCCCcccCCCCCCCCC-----------------------------------------------
Q 018568 167 DGGYPISAWRYFVHHGVVTEECDPYFDSTGCSH----------------------------------------------- 199 (354)
Q Consensus 167 ~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~----------------------------------------------- 199 (354)
+||.-..+...++++|+|+.+.||-+..+.-+.
T Consensus 135 DGGqw~~~~nli~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 135 DGGQWDMVVNLIKKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp S-B-HHHHHHHHHHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999743211000
Q ss_pred ----CCC--CCCCC------------Cccc--ccccccccccc-----------ccCceeEee-----------ee-EeC
Q 018568 200 ----PGC--EPAYP------------TPKC--VRKCVKKNQLW-----------RNSKHYSIS-----------AY-RIN 236 (354)
Q Consensus 200 ----~~~--~~~~~------------~~~~--~~~c~~~~~~~-----------~~~~~~~i~-----------~~-~~~ 236 (354)
||. +..+. ||.- ...+......| ...+.+.+. .| +++
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 110 00000 0000 00000000000 000111110 01 121
Q ss_pred CC--HHHHHHHHHHcCCEEEEEEecccccccCCceeecCC---------------------CCccCCeeEEEEEeCCCCC
Q 018568 237 SD--PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHIT---------------------GDVMGGHAVKLIGWGTSDD 293 (354)
Q Consensus 237 ~~--~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~---------------------~~~~~~Hav~iVGyg~~~~ 293 (354)
-+ .+.+.++|.++.||-.+-+|.+ +...+.||.+... .....+|||+|||.+.+++
T Consensus 295 id~lk~~~i~~Lk~G~~VwfgcDV~k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~ 373 (438)
T PF03051_consen 295 IDELKDAAIKSLKAGYPVWFGCDVGK-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDED 373 (438)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEETTT-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TT
T ss_pred HHHHHHHHHHHHHcCCcEEEeccCCc-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccC
Confidence 11 1345566777889999999975 4566888875321 1133589999999997777
Q ss_pred Cc-cEEEEEccCCCCCCCCceEEEEcc
Q 018568 294 GE-DYWILANQWNRSWGADGYFKIKRG 319 (354)
Q Consensus 294 g~-~ywivkNSWG~~WG~~Gy~~i~~g 319 (354)
|+ .+|+|+||||++.|.+|||.++..
T Consensus 374 g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 374 GKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp SSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 76 599999999999999999999864
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.84 E-value=2.4e-08 Score=91.71 Aligned_cols=80 Identities=25% Similarity=0.432 Sum_probs=56.4
Q ss_pred CHHHHHHH----HHHcCCEEEEEEecccccccCCceeec-----C-------C---------CCccCCeeEEEEEeCCCC
Q 018568 238 DPEDIMAE----IYKNGPVEVSFTVYEDFAHYKSGVYKH-----I-------T---------GDVMGGHAVKLIGWGTSD 292 (354)
Q Consensus 238 ~~~~ik~~----l~~~gPV~v~~~~~~~f~~y~~Giy~~-----~-------~---------~~~~~~Hav~iVGyg~~~ 292 (354)
+.+.+|++ +.++-||=.+-+|. .+..-+.||.+. + . +.....|||+|.|.+-++
T Consensus 296 ~me~lkkl~~~q~qagetVwFG~dvg-q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 296 DMERLKKLAIKQMQAGETVWFGCDVG-QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred cHHHHHHHHHHHHhcCCcEEeecCch-hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 34555553 33466888888884 455666676532 1 0 112347999999999776
Q ss_pred CCc-cEEEEEccCCCCCCCCceEEEEc
Q 018568 293 DGE-DYWILANQWNRSWGADGYFKIKR 318 (354)
Q Consensus 293 ~g~-~ywivkNSWG~~WG~~Gy~~i~~ 318 (354)
+|. --|.|.||||.+=|.+|||-++-
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred CCCceeeEeecccccccCCCceEeehH
Confidence 655 47999999999999999998864
No 21
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=98.20 E-value=1.1e-06 Score=61.56 Aligned_cols=43 Identities=28% Similarity=0.333 Sum_probs=37.0
Q ss_pred ccccccccccccHHH--HHHHHHcCCCCCeEEecCCCCCCCCHHHH
Q 018568 27 VVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQF 70 (354)
Q Consensus 27 ~~~~~~~~~~~~~~~--~i~~~N~~~~~~~~~~~N~~Fsd~t~~Ef 70 (354)
+..+...|+.+|.++ .|+++|+.+..+|++++| +|+|||.+||
T Consensus 14 ~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N-~fsD~t~eEf 58 (58)
T PF08246_consen 14 SAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLN-QFSDMTPEEF 58 (58)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SS-TTTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCc-cccCcChhhC
Confidence 567778899999984 799999768889999999 9999999997
No 22
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=97.86 E-value=1.7e-05 Score=51.06 Aligned_cols=39 Identities=44% Similarity=0.786 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCCCeEEecCCCCCCCCHHHHHHhhCCCCCC
Q 018568 39 QDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTP 80 (354)
Q Consensus 39 ~~~~i~~~N~~~~~~~~~~~N~~Fsd~t~~Ef~~~~~~~~~~ 80 (354)
.+++|+.||+. +.+|++|.| |.+.|.+.+++++|..+.+
T Consensus 2 sde~I~~IN~~-~~tWkAG~N--F~~~~~~~ik~LlGv~~~~ 40 (41)
T PF08127_consen 2 SDEFIDYINSK-NTTWKAGRN--FENTSIEYIKRLLGVLPDP 40 (41)
T ss_dssp -HHHHHHHHHC-T-SEEE------SSB-HHHHHHCS-B-TTS
T ss_pred CHHHHHHHHcC-CCcccCCCC--CCCCCHHHHHHHcCCCCCC
Confidence 57899999996 889999999 7999999999999987643
No 23
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=97.47 E-value=4.1e-05 Score=53.21 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=32.7
Q ss_pred ccccccccccHH--HHHHHHHcCCCCCeEEecCCCCCCCCHHH
Q 018568 29 SKLKLDSHILQD--SIIKEVNENPKAGWKAARNPQFSNYTVGQ 69 (354)
Q Consensus 29 ~~~~~~~~~~~~--~~i~~~N~~~~~~~~~~~N~~Fsd~t~~E 69 (354)
.+...|+.+|.+ +.|+.+|..+..+|++++| +|+|||++|
T Consensus 16 ~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N-~fsDlt~eE 57 (57)
T smart00848 16 EEELRRFEIFKENLKFIEEHNKKNDHSYTLGLN-QFADLTNEE 57 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCc-ccccCCCCC
Confidence 345567788887 4799999866689999999 999999876
No 24
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00014 Score=67.19 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=56.9
Q ss_pred cCccCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCccccHHHHHHhcC-------------------CC---------CCC
Q 018568 114 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLACCG-------------------FL---------CGD 164 (354)
Q Consensus 114 v~pV~dQg~cGsCwAfA~~~~le~~~~i~~~-~~~~lS~q~l~~c~~-------------------~~---------~~~ 164 (354)
-+||.||...|-||.|+.+..+---+..+-+ ....||..+|+--.+ +. .+.
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP 141 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP 141 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence 3799999999999999999877655544444 567888877742111 00 122
Q ss_pred CCCCCchHHHHHHHHHcCccCCCcccCC
Q 018568 165 GCDGGYPISAWRYFVHHGVVTEECDPYF 192 (354)
Q Consensus 165 gc~GG~~~~a~~~~~~~Gi~~e~~yPY~ 192 (354)
.-+||.-..-.+.++++|+.+..|||-.
T Consensus 142 ~~DGGqw~MfvNlVkKYGviPKkcy~~s 169 (457)
T KOG4128|consen 142 VPDGGQWQMFVNLVKKYGVIPKKCYLHS 169 (457)
T ss_pred CCCCchHHHHHHHHHHhCCCcHHhcccc
Confidence 3468887778888899999999999763
No 25
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.71 E-value=0.02 Score=46.62 Aligned_cols=58 Identities=29% Similarity=0.431 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHcCCEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeCCCCCCccEEEEEccC
Q 018568 237 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQW 304 (354)
Q Consensus 237 ~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 304 (354)
.+.+.|+++|.++.||++.+..... ...+..+.. ..++|.|+|+||+ + .. +++|..+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~--~~~~~~~~~----~~~~H~vvi~Gy~-~--~~-~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWR--PPNGDGYDG----TYGGHYVVIIGYD-E--DG-YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS----TTEEEEE-----TTEEEEEEEEE--S--SE--EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccc--cCCCCCcCC----CcCCEEEEEEEEe-C--CC-EEEEeCCC
Confidence 3568999999998899999984310 001112211 2368999999998 2 22 78888777
No 26
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.59 E-value=0.031 Score=47.61 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=69.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHH--------HcCCCccccHHHHHHhcCCCCCCCCCCCchHHHHHHHHHcCccCCCccc
Q 018568 119 DQGHCGSCWAFGAVEALSDRFCI--------HFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDP 190 (354)
Q Consensus 119 dQg~cGsCwAfA~~~~le~~~~i--------~~~~~~~lS~q~l~~c~~~~~~~gc~GG~~~~a~~~~~~~Gi~~e~~yP 190 (354)
.||.-+-|-+|+.++.|-..... .+.....+|+++|-++. -.+...++|.+..|....
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~----------~~~~~~i~y~ks~g~~~~---- 83 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTS----------LTPNQMIKYAKSQGRNPQ---- 83 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH------------B-HHHHHHHHHHTTEEEE----
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcC----------CCHHHHHHHHHHcCcchh----
Confidence 48999999999999987765221 11133456666665553 234577778776664211
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccccccccccCceeEeeeeEeCCCHHHHHHHHHHcCCEEEEEEecccccccCCcee
Q 018568 191 YFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVY 270 (354)
Q Consensus 191 Y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy 270 (354)
|.. -..+.+++++.+.++.|+.+..+..+ +.
T Consensus 84 ~~n-----------------------------------------~~~s~~eV~~~~~~nk~i~i~~~~v~------~~-- 114 (175)
T PF05543_consen 84 YNN-----------------------------------------RMPSFDEVKKLIDNNKGIAILADRVE------QT-- 114 (175)
T ss_dssp EEC-----------------------------------------S---HHHHHHHHHTT-EEEEEEEETT------SC--
T ss_pred Hhc-----------------------------------------CCCCHHHHHHHHHcCCCeEEEecccc------cC--
Confidence 100 01145789999988888888766321 11
Q ss_pred ecCCCCccCCeeEEEEEeCCCCCCccEEEEEccCC
Q 018568 271 KHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWN 305 (354)
Q Consensus 271 ~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG 305 (354)
.....+||++||||-.-.+|.++.++=|=|-
T Consensus 115 ----~~~~~gHAlavvGya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 115 ----NGPHAGHALAVVGYAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp ----TTB--EEEEEEEEEEEETTSEEEEEEE-TT-
T ss_pred ----CCCccceeEEEEeeeecCCCCeEEEEeCCcc
Confidence 1223589999999985466788999988884
No 27
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=90.13 E-value=1.1 Score=39.72 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHcCCEEEEEEecccccc---cCCceeec----CC--CCccCCeeEEEEEeCCCCCCccEEEEEc
Q 018568 237 SDPEDIMAEIYKNGPVEVSFTVYEDFAH---YKSGVYKH----IT--GDVMGGHAVKLIGWGTSDDGEDYWILAN 302 (354)
Q Consensus 237 ~~~~~ik~~l~~~gPV~v~~~~~~~f~~---y~~Giy~~----~~--~~~~~~Hav~iVGyg~~~~g~~ywivkN 302 (354)
-..++|..+|..+||+++-++.. ... =++-.... .. .....+|-|+|+||+. ..+-+++||
T Consensus 111 vs~~ei~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~---~~~~~~yrd 180 (212)
T PF09778_consen 111 VSIQEIIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDA---ATKEFEYRD 180 (212)
T ss_pred ccHHHHHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCccEEEEEEEeecC---CCCeEEEeC
Confidence 36789999999999888888763 111 02221111 11 1335699999999982 334455555
No 28
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=88.56 E-value=1.2 Score=41.90 Aligned_cols=66 Identities=14% Similarity=0.283 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEc
Q 018568 239 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKR 318 (354)
Q Consensus 239 ~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~ 318 (354)
.+.|++.|.++.||.+.++++ +..|...-| .....+|.|+|+||+ + ++..+.++-+ ....+.++++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~--~lpy~~~~~----~~~~~~H~i~v~G~d-~-~~~~~~v~D~------~~~~~~~~~~ 143 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY--YLPYRPNYY----KKHHADHYIVVYGYD-E-EEDVFYVSDP------PSYEPGRLPY 143 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc--cCCCCcccc----ccccCCcEEEEEEEe-C-CCCEEEEEcC------CCCcceeecH
Confidence 467888888877999998864 233333222 223358999999998 2 3455666533 3334556654
No 29
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.92 E-value=1.2 Score=38.20 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHcCCEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeCCCCCCccEEEEEccCC
Q 018568 237 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWN 305 (354)
Q Consensus 237 ~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG 305 (354)
.+..+||..|.++.||.+-... |-. ..-|+|+|+||| +.++..-+.||
T Consensus 121 ksl~~ik~ql~kg~PV~iw~T~---~~~-------------~s~H~v~itgyD-----k~n~yynDpyG 168 (195)
T COG4990 121 KSLSDIKGQLLKGRPVVIWVTN---FHS-------------YSIHSVLITGYD-----KYNIYYNDPYG 168 (195)
T ss_pred CcHHHHHHHHhcCCcEEEEEec---ccc-------------cceeeeEeeccc-----ccceEeccccc
Confidence 4679999999999999987664 222 236999999998 45666667774
No 30
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=74.56 E-value=10 Score=30.64 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=30.9
Q ss_pred HHHHHHHcCCEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeCCCCCCccEEEEEccC
Q 018568 242 IMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQW 304 (354)
Q Consensus 242 ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 304 (354)
+++.+....||.+.++.. . .....+|.|+|+||+ . .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------~------~~~~~gH~vVv~g~~-~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------V------SITPSGHAMVVIGYD-R---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------c------ccCCCCeEEEEEEEc-C---CCCEEEECCC
Confidence 778888888999988751 0 112258999999997 1 2335566665
No 31
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=74.16 E-value=3.1 Score=32.09 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=11.9
Q ss_pred CcchhHHHHHHHHHHHHHHhhc
Q 018568 1 MASSHLFLTTCLLILGVISSQT 22 (354)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~ 22 (354)
|+|+.++|+.++|.++.++++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 7888755554444444444443
No 32
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=72.95 E-value=57 Score=27.60 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHcCCEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeC
Q 018568 238 DPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWG 289 (354)
Q Consensus 238 ~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg 289 (354)
+.+.+...|.++||+-++.... ++....|+++|.|-+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P---------------~~~~~~H~~ViTGI~ 133 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP---------------GDSWVAHASVITGID 133 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC---------------CCcceeeEEEEEeec
Confidence 4588999999999999985432 222246999999976
No 33
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=70.51 E-value=7.5 Score=36.73 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.3
Q ss_pred cCCeeEEEEEeCCCCC--CccEEEEEccCCC
Q 018568 278 MGGHAVKLIGWGTSDD--GEDYWILANQWNR 306 (354)
Q Consensus 278 ~~~Hav~iVGyg~~~~--g~~ywivkNSWG~ 306 (354)
..+||-.|++.. .-+ +.+...+||-||.
T Consensus 234 ~~~HaY~Vl~~~-~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 234 VKGHAYSVLDVR-EVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred ccCcceEEeEEE-EEccCceEEEEecCCccC
Confidence 369999999997 334 7889999999995
No 34
>PLN03207 stomagen; Provisional
Probab=65.08 E-value=5.6 Score=30.44 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHHHhhcccccccccccccccccHHHHHHHHHc
Q 018568 3 SSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNE 48 (354)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~N~ 48 (354)
+..||++++.|||.+.++++.+..+....+.+..+-.++.++..|.
T Consensus 12 ~~~lffLl~~llla~~v~qgsr~~~~~~~~~~~s~~~q~~~~~l~g 57 (113)
T PLN03207 12 CLTLFFLLFFLLLGAYVIQGSRNQSILPYDQSISYPHQETVKLLNG 57 (113)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccccCcccccccCchhccccccc
Confidence 3467888888889999999988877777777766666666666554
No 35
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=61.18 E-value=10 Score=26.26 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=16.2
Q ss_pred CcchhHHHHHHHHHHHHHHhhccccccccc
Q 018568 1 MASSHLFLTTCLLILGVISSQTFAEGVVSK 30 (354)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 30 (354)
|+++++.+.++++.|. ++.|..-++...+
T Consensus 1 MA~Kl~vialLC~aLv-a~vQ~APQYa~Ge 29 (65)
T PF10731_consen 1 MASKLIVIALLCVALV-AIVQSAPQYAPGE 29 (65)
T ss_pred CcchhhHHHHHHHHHH-HHHhcCcccCCCC
Confidence 6666655555544444 4777755544443
No 36
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=54.10 E-value=5.3 Score=20.67 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=7.5
Q ss_pred CcchhHHHHHHHHH
Q 018568 1 MASSHLFLTTCLLI 14 (354)
Q Consensus 1 ~~~~~~~l~~~~~~ 14 (354)
||..+++|..+|++
T Consensus 1 MMk~vIIlvvLLli 14 (19)
T PF13956_consen 1 MMKLVIILVVLLLI 14 (19)
T ss_pred CceehHHHHHHHhc
Confidence 55555555555444
No 37
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=52.42 E-value=62 Score=28.14 Aligned_cols=50 Identities=32% Similarity=0.710 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeCCCCCCccEEEEEccCCCCCC--CCceEE
Q 018568 240 EDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWG--ADGYFK 315 (354)
Q Consensus 240 ~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG--~~Gy~~ 315 (354)
+.|+.+|.++.||...-.-.. ++||.+|=||. ...||- --|| || .+|||+
T Consensus 141 ~~i~~el~~~rPV~~~g~~~~------------------~GHawViDGy~----~~~~~H--~NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSKS------------------GGHAWVIDGYD----SDGYFH--CNWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEETT------------------EEEEEEEEEEE----SSSEEE--EE-S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecCC------------------CCeEEEEcCcc----CCCeEE--EeeC--ccCCCCCccC
Confidence 578889989999986643211 18999999996 234554 4565 55 568875
No 38
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=45.17 E-value=23 Score=21.98 Aligned_cols=20 Identities=35% Similarity=0.315 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHHHHHhhc
Q 018568 3 SSHLFLTTCLLILGVISSQT 22 (354)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~ 22 (354)
+.++||.+|++|+...++..
T Consensus 15 ~~llflv~imliif~f~le~ 34 (43)
T PF11395_consen 15 SFLLFLVIIMLIIFWFSLEI 34 (43)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677777777776666544
No 39
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=44.17 E-value=24 Score=30.61 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=27.3
Q ss_pred CcchhHHHHHHHHHHHHHHhhcccccccccccccccccHHHHHHHHHcC
Q 018568 1 MASSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNEN 49 (354)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~N~~ 49 (354)
|++++++|+++++|+-..+..-+.+ .++..|.+++.+ +++.-|+.
T Consensus 1 LLlvai~l~iif~i~y~~I~~dFde---~~F~~rL~Vl~E-Ylkrtna~ 45 (183)
T PF08475_consen 1 LLLVAILLIIIFLIYYLIIYNDFDE---NEFDNRLQVLTE-YLKRTNAD 45 (183)
T ss_pred CchhHHHHHHHHHHHHHhhccccch---HHHHHHHHHHHH-HHHhcCCC
Confidence 4555666666666666666555555 556666665554 77777754
No 40
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=41.20 E-value=22 Score=27.36 Aligned_cols=19 Identities=21% Similarity=-0.022 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 018568 4 SHLFLTTCLLILGVISSQT 22 (354)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~ 22 (354)
++|.|++.++||+++-.++
T Consensus 7 llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 4566666666666665555
No 41
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=39.28 E-value=21 Score=28.95 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q 018568 6 LFLTTCLLILGVISS 20 (354)
Q Consensus 6 ~~l~~~~~~~~~~~~ 20 (354)
||+++|++||+++++
T Consensus 4 l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 4 LFAIIIVAILLFLFL 18 (130)
T ss_pred eHHHHHHHHHHHHHH
Confidence 444444444444433
No 42
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=35.81 E-value=75 Score=30.05 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=21.6
Q ss_pred cCCeeEEEEEeCCCCCCcc--EEEEEccCCC
Q 018568 278 MGGHAVKLIGWGTSDDGED--YWILANQWNR 306 (354)
Q Consensus 278 ~~~Hav~iVGyg~~~~g~~--ywivkNSWG~ 306 (354)
..+||=.|++.. .-++.+ ...+||-||.
T Consensus 226 v~~HaYsVl~v~-~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 226 VKGHAYSVTDVR-EVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred ccCccEEEEEEE-EEecCCeEEEEEECCCCC
Confidence 359999999987 333445 8999999993
No 43
>PHA02909 hypothetical protein; Provisional
Probab=34.33 E-value=37 Score=23.22 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=14.2
Q ss_pred CcchhHHHHHHHHHHHHHHhhc
Q 018568 1 MASSHLFLTTCLLILGVISSQT 22 (354)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~ 22 (354)
|.|-++|+++.|.+|..+..+.
T Consensus 35 mvsfilfviiflsmftilacsy 56 (72)
T PHA02909 35 MVSFILFVIIFLSMFTILACSY 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777776666554
No 44
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=30.94 E-value=21 Score=26.73 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=12.7
Q ss_pred cchhHHHHHHHHHHHHHHhhc
Q 018568 2 ASSHLFLTTCLLILGVISSQT 22 (354)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~ 22 (354)
|..++|+.+++++++......
T Consensus 41 c~~lVfVii~lFi~ll~~i~~ 61 (84)
T PF06143_consen 41 CCFLVFVIIVLFILLLYNINK 61 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666655555
No 45
>PF15588 Imm7: Immunity protein 7
Probab=28.78 E-value=2e+02 Score=22.74 Aligned_cols=32 Identities=28% Similarity=0.744 Sum_probs=23.8
Q ss_pred EEEEEeCCCC-CCccEEEEEccC-----CCCCCCCceE
Q 018568 283 VKLIGWGTSD-DGEDYWILANQW-----NRSWGADGYF 314 (354)
Q Consensus 283 v~iVGyg~~~-~g~~ywivkNSW-----G~~WG~~Gy~ 314 (354)
|++|||++++ +.+.|-|++.+- -..=|.+||+
T Consensus 18 v~~vG~ADd~~~~~~yiilQR~~~~de~D~~~~~d~~~ 55 (115)
T PF15588_consen 18 VLMVGFADDEDGPKEYIILQRSLEFDEQDEDLGSDGYY 55 (115)
T ss_pred EEEEEEecCCCCCceEEEEEccCCCCCcccccCcCcEE
Confidence 8999999665 346799999963 4445668886
No 46
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=26.95 E-value=65 Score=29.94 Aligned_cols=38 Identities=29% Similarity=0.581 Sum_probs=0.0
Q ss_pred CCeeEEEEEeCCCCCC----ccEEEEEccCCC-----CCCC----------------------CceEEEE
Q 018568 279 GGHAVKLIGWGTSDDG----EDYWILANQWNR-----SWGA----------------------DGYFKIK 317 (354)
Q Consensus 279 ~~Hav~iVGyg~~~~g----~~ywivkNSWG~-----~WG~----------------------~Gy~~i~ 317 (354)
.+||-.|++.. +.++ ...-.+||-||. .|.+ +|.|||+
T Consensus 213 ~~HaY~Vl~~~-~~~~~~~~~~lv~LrNPwg~~~w~G~ws~~s~~W~~~~~~~~~~~~~~~~~dg~FWM~ 281 (298)
T PF00648_consen 213 PGHAYAVLDVR-EVNGNGEGHRLVKLRNPWGSTEWKGDWSDDSPEWTEIHPSLRKRLNQSSSDDGTFWMS 281 (298)
T ss_dssp TTS-EEEEEEE-EEEETTEEEEEEEEE-TTSS---SSTTSTTSGGGGGS-HHHHHHHTTTSSSSSEEEEE
T ss_pred cceeEEEEEEE-eeccccceeEEEEEcCCCccccccccccccccccccCCHHHHhhcccccccCccHhHh
No 47
>PF15528 Toxin_48: Putative toxin 48
Probab=25.71 E-value=52 Score=28.58 Aligned_cols=29 Identities=28% Similarity=0.775 Sum_probs=24.1
Q ss_pred EEEeCCCCCCccEEEEEccCCCCC----CCCceEEEEc
Q 018568 285 LIGWGTSDDGEDYWILANQWNRSW----GADGYFKIKR 318 (354)
Q Consensus 285 iVGyg~~~~g~~ywivkNSWG~~W----G~~Gy~~i~~ 318 (354)
-+||| +..|+.+++||-.| |.-||+.-.+
T Consensus 30 ~~G~g-----k~~~~~~~~~~~g~~~~~~~~gy~~~~y 62 (189)
T PF15528_consen 30 YFGWG-----KSAWEQRKGWGAGFSKRFGQTGYSYSTY 62 (189)
T ss_pred ccccC-----ccchhhhhhhcccccccCCceeEEEEEE
Confidence 45787 77899999999999 8889986554
No 48
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=24.90 E-value=48 Score=24.70 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=6.2
Q ss_pred chhHHHHHHHHHHHH
Q 018568 3 SSHLFLTTCLLILGV 17 (354)
Q Consensus 3 ~~~~~l~~~~~~~~~ 17 (354)
.+++.|.+|+|+++.
T Consensus 29 tILivLVIIiLlIml 43 (85)
T PF10717_consen 29 TILIVLVIIILLIML 43 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 49
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=24.73 E-value=2.3e+02 Score=19.30 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=21.2
Q ss_pred EEEEEeCCCC-CCccEEEEE-ccCCC---CCCCCceEEEEc
Q 018568 283 VKLIGWGTSD-DGEDYWILA-NQWNR---SWGADGYFKIKR 318 (354)
Q Consensus 283 v~iVGyg~~~-~g~~ywivk-NSWG~---~WG~~Gy~~i~~ 318 (354)
++++|+.... ....+-++| |+=|+ +||.+|..++..
T Consensus 14 Ilv~G~~~~~~~~~~~~l~Rln~DGsLDttFg~~G~v~~d~ 54 (55)
T TIGR02608 14 ILVAGYVDNSSGNNDFVLARLNADGSLDTTFGTGGKVTFDL 54 (55)
T ss_pred EEEEEEeecCCCcccEEEEEECCCCCccCCcCCCcEEEEeC
Confidence 6677775221 122344444 55554 788899988753
No 50
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.79 E-value=93 Score=21.72 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=22.6
Q ss_pred CcchhHHHHHHHHHHHHHHhhcccccccccccccccccHHHHH
Q 018568 1 MASSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSII 43 (354)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 43 (354)
|..+.+.|.+++++++.+. +........-.++|....-+++.
T Consensus 1 M~~k~~~la~~~~L~~~~~-~~~a~a~~ltiEqRLa~LE~rL~ 42 (60)
T PF11471_consen 1 MKIKKLALAVAILLASSAC-SASAQAAPLTIEQRLAALEQRLQ 42 (60)
T ss_pred CcccHHHHHHHHHHHHHHH-HHhhccccCCHHHHHHHHHHHHH
Confidence 5545666666666655555 23233334446677766655543
No 51
>PF15240 Pro-rich: Proline-rich
Probab=23.10 E-value=53 Score=28.34 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=4.0
Q ss_pred hHHHHHHHHH
Q 018568 5 HLFLTTCLLI 14 (354)
Q Consensus 5 ~~~l~~~~~~ 14 (354)
+|+|+.+.||
T Consensus 2 LlVLLSvALL 11 (179)
T PF15240_consen 2 LLVLLSVALL 11 (179)
T ss_pred hhHHHHHHHH
Confidence 3444444333
No 52
>KOG4621 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.83 E-value=2.3e+02 Score=23.05 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHcCCEEEEEEecc----cc--cccCCceeecCC------CCccCCeeEEEEEeCCCCCCccEEEEEcc
Q 018568 238 DPEDIMAEIYKNGPVEVSFTVYE----DF--AHYKSGVYKHIT------GDVMGGHAVKLIGWGTSDDGEDYWILANQ 303 (354)
Q Consensus 238 ~~~~ik~~l~~~gPV~v~~~~~~----~f--~~y~~Giy~~~~------~~~~~~Hav~iVGyg~~~~g~~ywivkNS 303 (354)
.+.+|...|+++.-|++.+--.. ++ ...+++.+.+.. .....+|-|+|-||+ .-.+-+.++|-
T Consensus 58 Si~dIqahLaqGnhiAIaLVdq~~Lhcdlceeplk~ccfspnghhcfcrtp~YqGHfiVi~GYd---~a~~c~~~ndP 132 (167)
T KOG4621|consen 58 SIHDIQAHLAQGNHIAIALVDQDKLHCDLCEEPLKSCCFSPNGHHCFCRTPCYQGHFIVICGYD---AARDCFEINDP 132 (167)
T ss_pred eHHHHHHHHhcCCeEEEEEecCCceehHHHHhHHHHhccCCCCccccccCCcccccEEEEeccc---cccCeEEEcCc
Confidence 45788888877656666543211 11 113445553321 123469999999998 33455555553
No 53
>PF09028 Mac-1: Mac 1; InterPro: IPR015117 The bacterial protein Mac 1 adopts an alpha/beta fold, with 14 beta strands and 9 alpha helices. The N-terminal domain is made up predominantly of alpha helices, whereas the C-terminal domain consists predominantly of beta sheets. Mac 1 blocks polymorphonuclear opsonophagocytosis, inhibits the production of reactive oxygen species and contains IgG endopeptidase activity. ; PDB: 1Y08_A 2AVW_C 2AU1_A.
Probab=22.53 E-value=1.5e+02 Score=28.21 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCEEEEEEecccccccCCceeecCCCCccCCeeEEEEEeCCC
Q 018568 239 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTS 291 (354)
Q Consensus 239 ~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~ 291 (354)
.+.||.+|..++.|+.+.... ...++|+|++=|...+
T Consensus 233 s~~ik~~L~~g~aigLs~~~~----------------n~~~~HiItlWGae~D 269 (333)
T PF09028_consen 233 SEKIKEALDNGKAIGLSYSPG----------------NSSGNHIITLWGAEYD 269 (333)
T ss_dssp HHHHHHHHHTT-EEEEEE--S----------------STTS-EEEEEEEEEE-
T ss_pred HHHHHHHHhcCCEEEEEeecC----------------CCCCCcEEEEeeeEEc
Confidence 478999998888887776431 1225899999997644
No 54
>PRK14758 hypothetical protein; Provisional
Probab=22.06 E-value=95 Score=17.75 Aligned_cols=8 Identities=38% Similarity=0.609 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 018568 11 CLLILGVI 18 (354)
Q Consensus 11 ~~~~~~~~ 18 (354)
+++|+++.
T Consensus 12 ivlIlCal 19 (27)
T PRK14758 12 IILILCAL 19 (27)
T ss_pred HHHHHHHH
Confidence 33343333
No 55
>PHA02677 hypothetical protein; Provisional
Probab=21.78 E-value=69 Score=24.95 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 018568 4 SHLFLTTCLLILGVISSQT 22 (354)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~ 22 (354)
++|||++|-+||+..++--
T Consensus 2 itLFLilCYFILIFNIiVP 20 (108)
T PHA02677 2 ISLFLIICYFVLIFNILVP 20 (108)
T ss_pred eeeHHHHHHHHHHHHHHHH
Confidence 4689999999999887755
No 56
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=20.90 E-value=1.2e+02 Score=20.74 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 018568 4 SHLFLTTCLLILGVISSQT 22 (354)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~ 22 (354)
+..||++++.+++..+...
T Consensus 14 ~~~lLiliis~~f~lI~~l 32 (61)
T PF06692_consen 14 SGPLLILIISFVFFLITSL 32 (61)
T ss_pred hhHHHHHHHHHHHHHHhhh
Confidence 4556666555555544443
Done!