BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018571
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7Z026|PPR37_BOVIN Protein phosphatase 1 regulatory subunit 37 OS=Bos taurus
GN=PPP1R37 PE=2 SV=1
Length = 699
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 27/105 (25%)
Query: 99 RRKLLADDVIMSLADS-----------SWEILDISGSDVSDFGLVKVAQMCKSLKAV--- 144
R LAD+ + L DS S +ILD+ + V D GL A +C+ LK
Sbjct: 250 RELYLADNKLNGLQDSAQLGNLLKFNCSLQILDLRNNHVLDSGL---AYICEGLKEQRKG 306
Query: 145 -------DIRITAAGVSEF---LLHCHSLETLRCGGSPRSNHAAR 179
+ ++T G++ L H HSLETL G +P N R
Sbjct: 307 LATLVLWNNQLTHTGMAFLGMTLPHTHSLETLNLGHNPIGNEGVR 351
>sp|O01757|YIL8_CAEEL UPF0202 protein F55A12.8 OS=Caenorhabditis elegans GN=F55A12.8 PE=3
SV=1
Length = 1043
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 1 MERNEAATKNKTTSLKKLDLYPVQNLTERNEATKNVTAFLKNLQFNSRLPHEK--SKPPS 58
+ER+E A T L+++ Y +N+ + + T ++ + L F RLP E + S
Sbjct: 813 IERSELAIHLSNTDLRRMSQYG-RNMVDSHIIT-DILPIVAKLNFEQRLPQELKLAVTQS 870
Query: 59 LVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRR 100
+ L G+ KH EDI +LD P++ A+ + A RR
Sbjct: 871 AILLARGLQHKHFEDISKELD-----LPMNQIFALLTKAIRR 907
>sp|Q0DKP3|TIR1A_ORYSJ Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza
sativa subsp. japonica GN=Os05g0150500 PE=2 SV=2
Length = 587
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 102 LLADDVIMSLADSS--WEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLH 159
LL D V S+ + E+L I+ + SD GL + CKSLK ++IR G L +
Sbjct: 450 LLTDLVFKSIGAHADRLEMLSIAFAGNSDLGLHYILSGCKSLKKLEIRDCPFGDKPLLAN 509
Query: 160 CHSLETLR 167
LET+R
Sbjct: 510 AAKLETMR 517
>sp|Q8J2J3|AMN1_PICAD Antagonist of mitotic exit network protein 1 OS=Pichia angusta
(strain ATCC 26012 / NRRL Y-7560 / DL-1) GN=AMN1 PE=3
SV=1
Length = 511
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 41 KNLQFNSRLPHEKSKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIASIARRR 100
+NL F+S PP + + ++ K DL + IN PV+++ I
Sbjct: 217 ENLYFDSDFKLMNYSPPRIAAPKSFVLHKLKSTQQRDLANLHIN-PVNLEWLEFYICP-- 273
Query: 101 KLLADDVIMSLADSSWEILDISGSDV-SDFGLVKVAQMCKSLKAVDIR----ITAAGVSE 155
KLL + L + + L + GS V D L ++A + +L +D+R IT AG+
Sbjct: 274 KLLPS---LHLYTAKLKKLVLPGSKVVDDVYLQQIAPLMPNLVHLDLRACEHITDAGLYA 330
Query: 156 FLLHCHSLETLRCG 169
HC +ETL CG
Sbjct: 331 IGTHCPKIETLNCG 344
>sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana
GN=TIR1 PE=1 SV=2
Length = 594
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 117 EILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLHCHSLETLRC--GGSPRS 174
E+L ++ + SD G+ V C SL+ ++IR G L + LET+R S
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
Query: 175 NHAARRCLGILKPKLN 190
+ A + LG PKLN
Sbjct: 519 SFGACKLLGQKMPKLN 534
>sp|Q7XVM8|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza
sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1
Length = 575
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 102 LLADDVIMSLADSS--WEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLH 159
LL D V M + + E+L I+ + SD G++ V CK+L+ ++IR + G + L +
Sbjct: 437 LLTDKVFMYIGKYAKQLEMLSIAFAGDSDKGMMHVMNGCKNLRKLEIRDSPFGDAALLGN 496
Query: 160 CHSLETLR 167
ET+R
Sbjct: 497 FARYETMR 504
>sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2
SV=1
Length = 610
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 92/241 (38%), Gaps = 44/241 (18%)
Query: 10 NKTTSLKKLDLYPVQNLTERNEATKNVTAFLKNLQ-FNSRLPHEKSKPPSLVSLCLGIVG 68
K TSLK LDL Q ++ V F K L+ N R E ++ L +G
Sbjct: 163 QKCTSLKSLDL---QGCYVGDQGLAAVGKFCKQLEELNLRFC-EGLTDVGVIDLVVG-CS 217
Query: 69 KHLEDIIGDLDEIAINFPVDIKIAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSD 128
K L+ I +A + + +++ ++ KLL E+L + + D
Sbjct: 218 KSLKSI-----GVAASAKIT-DLSLEAVGSHCKLL-------------EVLYLDSEYIHD 258
Query: 129 FGLVKVAQMCKSLKAVDIRITA------AGVSEFLLHCHSLETLRCGGSPRSNHAARRCL 182
GL+ VAQ C LK + ++ + A V E C SLE L R +
Sbjct: 259 KGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGEL---CTSLERLALYSFQHFTDKGMRAI 315
Query: 183 GILKPKLNDVE-GDSWEELVNTD----IGHGAQSLRWF---VWPNIDKDSIEMMSTECPR 234
G KL D+ D + V+ I HG + L NI IE + CPR
Sbjct: 316 GKGSKKLKDLTLSDCY--FVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPR 373
Query: 235 I 235
+
Sbjct: 374 L 374
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 108 IMSLAD--SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIR----ITAAGVSEFLLHC 160
+ SLA +S + LD+ G V D GL V + CK L+ +++R +T GV + ++ C
Sbjct: 158 LCSLAQKCTSLKSLDLQGCYVGDQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGC 216
>sp|Q2R3K5|TIRC_ORYSJ Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza
sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1
Length = 568
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 102 LLADDVIMSLADSS--WEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAGVSEFLLH 159
LL D V + + + E+L ++ + +D G+ V CK+LK ++IR + G S L
Sbjct: 431 LLTDTVFLYIGMYAERLEMLSVAFAGDTDDGMTYVLNGCKNLKKLEIRDSPFGDSALLAG 490
Query: 160 CHSLETLR 167
H E +R
Sbjct: 491 MHQYEAMR 498
>sp|B1KTC6|FTHS_CLOBM Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=fhs PE=3 SV=1
Length = 557
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 36 VTAFLKNLQFNSRLPHEKSKPPSLVSLCLGI--VGKHLEDI--IGDLDEIAIN-FPVDIK 90
+ A ++ L++NS +P E K ++ +L GI +GKH+E++ G +AIN F D +
Sbjct: 328 IVATVRALKYNSGIPKENLKEQNMEALSKGIKNLGKHIENVNKFGVPAVVAINKFISDTE 387
Query: 91 IAIASIARRRKLLADDVIMSLADSSWEILDISGSDVSD 128
I I + K L +V S+A+ WE G +++D
Sbjct: 388 EEIEFIKKYCKELGAEV--SIAE-VWEKGGNGGLELAD 422
>sp|O74999|RAD7_SCHPO DNA repair protein rhp7 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp7 PE=3 SV=1
Length = 563
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 52 EKSKPPSLVSLCLGIVGKHLEDI--IGDLDEIAINFPVDIKIAIASIARRRKLLADDVIM 109
E+ P L LC+ ++ +++ DI GD+ ++ ++ I I++ R L V +
Sbjct: 184 EEISVPKLQDLCIRVIAEYINDIEAFGDIGQVNMDKISQI------ISKNRSLNDTTVKL 237
Query: 110 SLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITAAG-VSEFLLHCHS 162
L+ E+ S ++ L ++AQ C +L+ + +T G + + +LH ++
Sbjct: 238 FLSGGQTELKLYDCSKITADSLFQIAQYCPNLQT--LHLTYCGQMQDQVLHFYA 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,098,357
Number of Sequences: 539616
Number of extensions: 5139697
Number of successful extensions: 12788
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 12772
Number of HSP's gapped (non-prelim): 46
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)