Query 018571
Match_columns 354
No_of_seqs 289 out of 1526
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.7 4.3E-18 9.3E-23 168.3 3.3 166 102-273 150-355 (483)
2 KOG4341 F-box protein containi 99.6 7.6E-16 1.6E-20 152.5 3.7 135 103-237 203-376 (483)
3 KOG1947 Leucine rich repeat pr 99.5 9.2E-14 2E-18 138.9 7.9 162 114-276 243-439 (482)
4 KOG1947 Leucine rich repeat pr 99.4 9.2E-13 2E-17 131.7 7.7 131 114-250 214-362 (482)
5 KOG2120 SCF ubiquitin ligase, 99.1 1.8E-10 3.9E-15 110.9 7.5 141 102-250 221-374 (419)
6 KOG2120 SCF ubiquitin ligase, 99.1 8.6E-11 1.9E-15 113.1 3.9 130 114-250 185-324 (419)
7 cd00116 LRR_RI Leucine-rich re 98.9 4.9E-09 1.1E-13 99.9 9.8 135 114-255 137-294 (319)
8 cd00116 LRR_RI Leucine-rich re 98.9 1.2E-08 2.5E-13 97.3 10.6 136 114-256 108-267 (319)
9 KOG3864 Uncharacterized conser 98.1 1.9E-06 4.1E-11 79.3 2.9 81 115-197 102-186 (221)
10 KOG3665 ZYG-1-like serine/thre 97.9 2.9E-05 6.2E-10 83.7 8.2 59 114-172 122-184 (699)
11 KOG1909 Ran GTPase-activating 97.8 4E-05 8.6E-10 75.5 6.5 135 114-255 120-286 (382)
12 smart00367 LRR_CC Leucine-rich 97.7 3.1E-05 6.6E-10 48.1 2.9 25 160-184 1-25 (26)
13 KOG3207 Beta-tubulin folding c 97.6 3.8E-05 8.3E-10 77.6 3.6 137 114-260 146-292 (505)
14 PF14580 LRR_9: Leucine-rich r 97.6 2.9E-05 6.2E-10 70.2 2.5 116 115-237 20-144 (175)
15 KOG1909 Ran GTPase-activating 97.4 0.00069 1.5E-08 67.0 8.5 131 114-251 157-310 (382)
16 KOG3665 ZYG-1-like serine/thre 97.2 0.0013 2.9E-08 71.1 8.7 163 103-272 72-283 (699)
17 KOG3864 Uncharacterized conser 97.1 0.00053 1.1E-08 63.4 3.7 89 103-192 113-209 (221)
18 PF14580 LRR_9: Leucine-rich r 96.9 8.1E-05 1.8E-09 67.2 -2.5 134 126-272 4-148 (175)
19 smart00367 LRR_CC Leucine-rich 96.8 0.0011 2.3E-08 41.1 2.2 23 114-136 2-25 (26)
20 PLN00113 leucine-rich repeat r 96.6 0.002 4.2E-08 71.4 4.8 15 230-250 305-319 (968)
21 PLN00113 leucine-rich repeat r 96.5 0.0035 7.6E-08 69.4 5.9 127 114-251 212-344 (968)
22 PLN03210 Resistant to P. syrin 96.4 0.0027 5.9E-08 72.3 4.4 119 114-250 778-904 (1153)
23 KOG3207 Beta-tubulin folding c 96.3 0.0013 2.8E-08 66.8 1.0 100 114-216 121-228 (505)
24 KOG4194 Membrane glycoprotein 95.9 0.0038 8.3E-08 65.7 2.1 114 138-267 316-447 (873)
25 KOG2982 Uncharacterized conser 95.6 0.012 2.6E-07 57.7 3.8 129 114-250 71-210 (418)
26 PF13516 LRR_6: Leucine Rich r 95.6 0.01 2.2E-07 35.8 2.2 24 160-184 1-24 (24)
27 KOG4308 LRR-containing protein 95.5 0.0048 1E-07 64.0 0.7 162 102-270 98-296 (478)
28 PF13516 LRR_6: Leucine Rich r 95.4 0.009 2E-07 36.0 1.5 23 114-136 2-24 (24)
29 PF13855 LRR_8: Leucine rich r 95.3 0.0022 4.7E-08 47.1 -1.8 54 114-172 1-60 (61)
30 KOG1859 Leucine-rich repeat pr 94.6 0.013 2.8E-07 63.1 1.1 84 104-201 179-268 (1096)
31 PLN03210 Resistant to P. syrin 94.3 0.059 1.3E-06 61.6 5.5 96 114-216 611-710 (1153)
32 KOG2123 Uncharacterized conser 94.1 0.025 5.5E-07 55.0 1.7 111 114-229 19-136 (388)
33 KOG0618 Serine/threonine phosp 93.6 0.021 4.5E-07 62.9 0.1 121 114-250 359-487 (1081)
34 smart00368 LRR_RI Leucine rich 93.1 0.11 2.4E-06 32.6 2.9 25 114-138 2-26 (28)
35 KOG0618 Serine/threonine phosp 92.5 0.17 3.8E-06 55.9 5.1 45 98-146 366-414 (1081)
36 KOG2739 Leucine-rich acidic nu 92.1 0.066 1.4E-06 51.2 1.3 79 114-194 65-150 (260)
37 PF12799 LRR_4: Leucine Rich r 91.2 0.23 4.9E-06 34.5 2.9 38 161-201 1-38 (44)
38 PF12799 LRR_4: Leucine Rich r 91.0 0.13 2.9E-06 35.7 1.6 13 159-171 22-34 (44)
39 KOG2123 Uncharacterized conser 90.0 0.13 2.8E-06 50.2 1.0 13 225-237 109-121 (388)
40 KOG4194 Membrane glycoprotein 89.4 0.1 2.2E-06 55.4 -0.2 83 185-277 219-316 (873)
41 KOG4308 LRR-containing protein 89.0 0.16 3.4E-06 52.9 0.8 58 172-229 243-311 (478)
42 KOG2739 Leucine-rich acidic nu 88.7 0.14 3.1E-06 49.0 0.3 95 115-216 44-149 (260)
43 PF13855 LRR_8: Leucine rich r 88.5 0.061 1.3E-06 39.2 -1.9 37 161-199 1-37 (61)
44 PRK15387 E3 ubiquitin-protein 86.6 0.29 6.2E-06 53.9 1.1 14 114-127 242-255 (788)
45 PRK15387 E3 ubiquitin-protein 86.0 0.26 5.7E-06 54.2 0.5 22 230-257 442-463 (788)
46 PLN03150 hypothetical protein; 85.8 0.68 1.5E-05 49.6 3.4 79 116-198 420-501 (623)
47 COG5238 RNA1 Ran GTPase-activa 85.6 9.8 0.00021 37.4 10.8 167 101-273 40-256 (388)
48 PRK15386 type III secretion pr 83.4 2.1 4.6E-05 43.9 5.6 66 114-196 52-121 (426)
49 PLN03150 hypothetical protein; 83.1 1.1 2.4E-05 48.0 3.6 83 111-196 438-524 (623)
50 COG5238 RNA1 Ran GTPase-activa 83.0 6 0.00013 38.9 8.1 121 114-236 120-270 (388)
51 KOG1859 Leucine-rich repeat pr 80.9 0.94 2E-05 49.5 2.0 117 115-250 165-290 (1096)
52 KOG1644 U2-associated snRNP A' 80.7 1 2.3E-05 42.1 2.0 61 138-200 63-126 (233)
53 KOG1259 Nischarin, modulator o 80.7 0.87 1.9E-05 45.1 1.6 120 114-251 284-411 (490)
54 KOG2982 Uncharacterized conser 79.8 1.7 3.7E-05 43.1 3.2 125 115-250 46-184 (418)
55 KOG1644 U2-associated snRNP A' 77.0 1.3 2.8E-05 41.4 1.5 91 103-195 49-148 (233)
56 PF13504 LRR_7: Leucine rich r 73.0 1.9 4.2E-05 23.9 1.0 14 114-127 1-14 (17)
57 KOG1259 Nischarin, modulator o 70.6 2.3 4.9E-05 42.3 1.5 77 114-199 307-386 (490)
58 PRK15370 E3 ubiquitin-protein 70.1 4.3 9.3E-05 44.7 3.6 86 160-259 345-435 (754)
59 smart00368 LRR_RI Leucine rich 68.7 7.6 0.00016 24.2 3.1 24 161-185 2-25 (28)
60 KOG3763 mRNA export factor TAP 59.7 16 0.00034 38.9 5.2 88 150-237 207-305 (585)
61 KOG4658 Apoptotic ATPase [Sign 57.4 9.8 0.00021 42.8 3.5 63 136-200 542-608 (889)
62 PF00560 LRR_1: Leucine Rich R 56.7 4.4 9.5E-05 23.7 0.4 13 115-127 1-13 (22)
63 PRK15370 E3 ubiquitin-protein 56.5 25 0.00053 38.9 6.3 7 244-250 393-399 (754)
64 KOG0444 Cytoskeletal regulator 54.8 1.9 4E-05 46.7 -2.5 16 186-201 244-259 (1255)
65 KOG0531 Protein phosphatase 1, 53.1 3.7 8.1E-05 41.4 -0.6 11 114-124 95-105 (414)
66 cd03742 SOCS_Rab40 SOCS (suppr 51.2 16 0.00035 25.6 2.5 34 55-93 2-36 (43)
67 KOG3763 mRNA export factor TAP 50.3 25 0.00054 37.4 4.9 98 93-193 196-307 (585)
68 PF11065 DUF2866: Protein of u 50.0 10 0.00022 28.9 1.4 51 244-302 1-53 (65)
69 COG4886 Leucine-rich repeat (L 44.2 15 0.00032 36.3 2.1 39 158-199 160-198 (394)
70 COG4886 Leucine-rich repeat (L 42.7 14 0.0003 36.5 1.7 53 115-171 141-196 (394)
71 cd03737 SOCS_SOCS3 SOCS (suppr 42.3 20 0.00043 25.0 1.9 19 55-73 2-20 (42)
72 cd03717 SOCS_SOCS_like SOCS (s 41.4 19 0.00041 24.4 1.6 35 55-93 2-36 (39)
73 COG1509 KamA Lysine 2,3-aminom 41.3 75 0.0016 32.1 6.5 80 105-184 147-244 (369)
74 KOG4658 Apoptotic ATPase [Sign 39.2 16 0.00036 41.0 1.7 11 114-124 571-581 (889)
75 cd03745 SOCS_WSB2_SWIP2 SOCS ( 37.0 21 0.00045 24.5 1.3 32 56-91 3-34 (39)
76 KOG0531 Protein phosphatase 1, 35.1 16 0.00035 36.8 0.8 69 126-201 102-176 (414)
77 cd03735 SOCS_SOCS1 SOCS (suppr 34.9 27 0.00058 24.4 1.6 35 55-93 2-36 (43)
78 smart00253 SOCS suppressors of 34.1 27 0.00059 24.1 1.6 38 52-93 3-40 (43)
79 PF03382 DUF285: Mycoplasma pr 29.7 38 0.00083 28.2 2.0 97 132-237 4-115 (120)
80 PF07723 LRR_2: Leucine Rich R 29.6 41 0.00088 20.7 1.6 25 163-187 2-26 (26)
81 KOG0444 Cytoskeletal regulator 27.4 12 0.00026 40.8 -1.7 22 254-275 245-268 (1255)
82 cd03740 SOCS_SOCS6 SOCS (suppr 26.2 72 0.0016 21.9 2.6 35 55-93 2-36 (41)
83 cd03746 SOCS_WSB1_SWIP1 SOCS ( 24.3 52 0.0011 22.5 1.5 18 55-72 2-19 (40)
84 KOG3735 Tropomodulin and leiom 24.0 1.5E+02 0.0032 29.8 5.2 70 114-184 198-277 (353)
85 smart00370 LRR Leucine-rich re 22.0 57 0.0012 19.3 1.3 14 114-127 2-15 (26)
86 smart00369 LRR_TYP Leucine-ric 22.0 57 0.0012 19.3 1.3 14 114-127 2-15 (26)
87 PF11822 DUF3342: Domain of un 21.8 97 0.0021 30.8 3.5 39 56-95 89-127 (317)
88 cd03733 SOCS_WSB_SWIP SOCS (su 21.6 63 0.0014 22.0 1.5 18 55-72 2-19 (39)
89 cd03734 SOCS_CIS1 SOCS (suppre 21.3 74 0.0016 22.0 1.8 19 55-73 2-20 (41)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.70 E-value=4.3e-18 Score=168.30 Aligned_cols=166 Identities=17% Similarity=0.311 Sum_probs=145.5
Q ss_pred CCCHHHHHHhhc--CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCC
Q 018571 102 LLADDVIMSLAD--SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRS 174 (354)
Q Consensus 102 ~ltD~~L~~la~--~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~I 174 (354)
-+.|..+..++. |++++|+++|| +|||..+..++..|++|++|+| .|||..++.++++|++|++||++||++|
T Consensus 150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 378888988887 99999999999 9999999999999999999999 8999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCcEeeCCC--------------------------c-cccchhh--hhccCccccccc---cCCCCH
Q 018571 175 NHAARRCLGILKPKLNDVEGDS--------------------------W-EELVNTD--IGHGAQSLRWFV---WPNIDK 222 (354)
Q Consensus 175 tD~sL~~La~~cp~L~~L~ls~--------------------------~-~~td~~~--i~~~~~~L~~L~---C~~ITD 222 (354)
++.+++++.++|..|+.+...| | .++|.++ +..+|..|+.|. |.++||
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 9988888888777765543333 2 2445443 367788888887 999999
Q ss_pred HHHHHHHhcCCcceecCCCCceeecCCC-CCccccccccCCCCccccccccc
Q 018571 223 DSIEMMSTECPRIIVNPKPSPFGFRGFE-VPREAFPDITLDDPFVNDIDPSA 273 (354)
Q Consensus 223 ~~l~~L~~~Cp~L~~~p~~~~L~l~gC~-~s~~al~~v~~~~~~v~~~~~~~ 273 (354)
..+.++.++|++|++ +-+.+|. +++.++..+.-.++.+.+++.+.
T Consensus 310 ~~l~aLg~~~~~L~~------l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQV------LELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred HHHHHHhcCCCceEE------EeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 999999999999999 9999998 89999999999999999988865
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.58 E-value=7.6e-16 Score=152.49 Aligned_cols=135 Identities=20% Similarity=0.290 Sum_probs=102.5
Q ss_pred CCHHHHHHhhc--CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE------------------------------eec
Q 018571 103 LADDVIMSLAD--SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI------------------------------RIT 149 (354)
Q Consensus 103 ltD~~L~~la~--~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL------------------------------~IT 149 (354)
+||..++.+++ ++|++|+++.| +|++.|+..+.++|++|+.+.+ .||
T Consensus 203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence 45555555554 55555555555 5555555555555544444422 589
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCcc-ccchhh--hhccCccccccc---cCCCCHH
Q 018571 150 AAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWE-ELVNTD--IGHGAQSLRWFV---WPNIDKD 223 (354)
Q Consensus 150 d~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~-~td~~~--i~~~~~~L~~L~---C~~ITD~ 223 (354)
|.++..++.+|..||+|+.++|..++|..+.+|+.+|++|+.|.+.+|. .+|.|. ++.+|..|+.++ |..++|.
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 9999999999999999999999999999999999999999999998885 566664 478888888887 8888888
Q ss_pred HHHHHHhcCCccee
Q 018571 224 SIEMMSTECPRIIV 237 (354)
Q Consensus 224 ~l~~L~~~Cp~L~~ 237 (354)
.+..++.+||.|++
T Consensus 363 tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 363 TLASLSRNCPRLRV 376 (483)
T ss_pred hHhhhccCCchhcc
Confidence 88889999999887
No 3
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.46 E-value=9.2e-14 Score=138.88 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=92.8
Q ss_pred CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCC
Q 018571 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 188 (354)
Q Consensus 114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~ 188 (354)
++|++|++++| .|||.|+..++..|++|+.|.+ .+||.|+..++..|++|++|++++|..++|.++..++.+||+
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~ 322 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPN 322 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcc
Confidence 56666667777 4777777777777777777776 467777777777777777777777777777777777777777
Q ss_pred CcEeeCCCcc----ccchh--------------hhhccCccccccc---cCCCCHHHHHHHHhcCCcce-e-----cCC-
Q 018571 189 LNDVEGDSWE----ELVNT--------------DIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRII-V-----NPK- 240 (354)
Q Consensus 189 L~~L~ls~~~----~td~~--------------~i~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~-~-----~p~- 240 (354)
|+.|.+.+.. +++.+ .++.+|+.|+.+. |. +++.++..+..+||.|+ . ...
T Consensus 323 l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~ 401 (482)
T KOG1947|consen 323 LRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSD 401 (482)
T ss_pred hhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCC
Confidence 6665432221 11111 1234455555544 44 55555555566666551 0 000
Q ss_pred -CCceeecCCC-CCccccccccCCCCcccccccccccc
Q 018571 241 -PSPFGFRGFE-VPREAFPDITLDDPFVNDIDPSAWAV 276 (354)
Q Consensus 241 -~~~L~l~gC~-~s~~al~~v~~~~~~v~~~~~~~W~v 276 (354)
..-+++..|. ++...+......+..+.+++...+..
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 0116666666 45555544444344444444444433
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.37 E-value=9.2e-13 Score=131.68 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=64.7
Q ss_pred CCccEEEeec-C-CCCHHH--HHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhc
Q 018571 114 SSWEILDISG-S-DVSDFG--LVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 185 (354)
Q Consensus 114 ~~L~~LdLs~-C-~ITD~g--L~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~ 185 (354)
++|+.|++++ | .+++.+ ...++..|++|++|++ .|||.|+.+++..|++|++|.+++|..+||.++..++..
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 4555555554 2 333333 2334444555555555 355555555555555555555555555555555555555
Q ss_pred CCCCcEeeCCCcccc-chhhh--hccCccccccc------cCCCCHHHHHHHHhcCC-cceecCCCCceeecCCC
Q 018571 186 KPKLNDVEGDSWEEL-VNTDI--GHGAQSLRWFV------WPNIDKDSIEMMSTECP-RIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 186 cp~L~~L~ls~~~~t-d~~~i--~~~~~~L~~L~------C~~ITD~~l~~L~~~Cp-~L~~~p~~~~L~l~gC~ 250 (354)
||.|++|++++|..+ |.++. +..|++|+.+. |..|++.++..+...++ .+.. +.+.+|+
T Consensus 294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~------~~~~~~~ 362 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAE------LILRSCP 362 (482)
T ss_pred cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhH------HHHhcCC
Confidence 555555555554332 33322 33344443332 34455555555555553 4454 5555555
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.8e-10 Score=110.88 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=90.4
Q ss_pred CCCHHHHHHhhc-CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHH-hcCCCCCEEEecCCC-C
Q 018571 102 LLADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFL-LHCHSLETLRCGGSP-R 173 (354)
Q Consensus 102 ~ltD~~L~~la~-~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La-~~Cp~Le~L~L~gC~-~ 173 (354)
.++|.....++. .+|+.|||++| ++|..|+..+...|..|..|+| ..++. +.+++ .--++|..|||+||. .
T Consensus 221 ~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrn 299 (419)
T KOG2120|consen 221 RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRN 299 (419)
T ss_pred ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhh
Confidence 478888888987 99999999999 9999999999999999999999 22333 33332 235566666666663 3
Q ss_pred CcHHHHHHHHhcCCCCcEeeCCCccccchhhh--hccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecC
Q 018571 174 SNHAARRCLGILKPKLNDVEGDSWEELVNTDI--GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRG 248 (354)
Q Consensus 174 ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i--~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~g 248 (354)
..+.-+..+++.||+|.+||++.+....++.+ -...+-|++|. |..|..+.+..+ ..-|.|.+ |++.|
T Consensus 300 l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~y------Ldv~g 372 (419)
T KOG2120|consen 300 LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVY------LDVFG 372 (419)
T ss_pred hhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeee-ccCcceEE------EEecc
Confidence 34445555666666666666665543333332 22334444444 666665555443 34455666 66666
Q ss_pred CC
Q 018571 249 FE 250 (354)
Q Consensus 249 C~ 250 (354)
|-
T Consensus 373 ~v 374 (419)
T KOG2120|consen 373 CV 374 (419)
T ss_pred cc
Confidence 63
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.6e-11 Score=113.07 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=112.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
..+++|||+...||-..+..+...|.+|+.|.| +++|.-+..||++ .+|+.|||++|.++|..+++.+-.+|..|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHh
Confidence 569999999999999999999989999999999 9999999999974 889999999999999999999999999999
Q ss_pred EeeCCCccccchhh---hhccCccccccc---c-CCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 191 DVEGDSWEELVNTD---IGHGAQSLRWFV---W-PNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 191 ~L~ls~~~~td~~~---i~~~~~~L~~L~---C-~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
.|++++|..+.+.+ +....++|..|+ | .++-+.-+..+++.||+|.. ||+..|-
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~------LDLSD~v 324 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH------LDLSDSV 324 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee------ecccccc
Confidence 99999987766543 355566677766 3 46677778888888888888 8887776
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=4.9e-09 Score=99.87 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=83.0
Q ss_pred CCccEEEeecCCCCHHHHHHH---HHhCCCCcEEEE---eecHHHHHHHHhc---CCCCCEEEecCCCCCcHHHHHHHH-
Q 018571 114 SSWEILDISGSDVSDFGLVKV---AQMCKSLKAVDI---RITAAGVSEFLLH---CHSLETLRCGGSPRSNHAARRCLG- 183 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~l---a~~C~~L~~LdL---~ITd~gl~~La~~---Cp~Le~L~L~gC~~ItD~sL~~La- 183 (354)
++|++|+|++|.+++.++..+ ...|++|++|++ .+++.++..++.. +++|++|++++| .+++.+...++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~ 215 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAE 215 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHH
Confidence 567777777777765554433 233567777777 6676666665543 347777777776 45555554433
Q ss_pred --hcCCCCcEeeCCCccccchhhh--hcc----Cccccccc--cCCCCHHHHHHHHhcC---CcceecCCCCceeecCCC
Q 018571 184 --ILKPKLNDVEGDSWEELVNTDI--GHG----AQSLRWFV--WPNIDKDSIEMMSTEC---PRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 184 --~~cp~L~~L~ls~~~~td~~~i--~~~----~~~L~~L~--C~~ITD~~l~~L~~~C---p~L~~~p~~~~L~l~gC~ 250 (354)
..+++|++|+++++.++|.++. ... .+.|+.|+ +..+||.+...+...+ ++|+. +++.++.
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~------l~l~~N~ 289 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE------LDLRGNK 289 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE------EECCCCC
Confidence 3466777777777776665442 222 35677776 5567766666555444 35666 7777777
Q ss_pred CCccc
Q 018571 251 VPREA 255 (354)
Q Consensus 251 ~s~~a 255 (354)
+++++
T Consensus 290 l~~~~ 294 (319)
T cd00116 290 FGEEG 294 (319)
T ss_pred CcHHH
Confidence 66553
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=1.2e-08 Score=97.27 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=103.7
Q ss_pred CCccEEEeecCCCCHHHHHHHHHh---C-CCCcEEEE---eecHHHHHH---HHhcCCCCCEEEecCCCCCcHHHHHHHH
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQM---C-KSLKAVDI---RITAAGVSE---FLLHCHSLETLRCGGSPRSNHAARRCLG 183 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~---C-~~L~~LdL---~ITd~gl~~---La~~Cp~Le~L~L~gC~~ItD~sL~~La 183 (354)
++|++|++++|.+++.++..+... + ++|+.|++ .+++.++.. ...+|++|++|++++|. +++.++..++
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHH
Confidence 559999999999998888765433 4 88999999 777555443 34567889999999874 6767777666
Q ss_pred hcC---CCCcEeeCCCccccchhh--h---hccCccccccc--cCCCCHHHHHHHHhcC----CcceecCCCCceeecCC
Q 018571 184 ILK---PKLNDVEGDSWEELVNTD--I---GHGAQSLRWFV--WPNIDKDSIEMMSTEC----PRIIVNPKPSPFGFRGF 249 (354)
Q Consensus 184 ~~c---p~L~~L~ls~~~~td~~~--i---~~~~~~L~~L~--C~~ITD~~l~~L~~~C----p~L~~~p~~~~L~l~gC 249 (354)
..+ +.|++|+++++.+.+.+. + ...+++|+.|+ ...++|.++..+...+ +.|+. +++.+|
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~------L~l~~n 260 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT------LSLSCN 260 (319)
T ss_pred HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE------EEccCC
Confidence 444 599999999988776653 2 34567899888 4469999999888876 68888 999999
Q ss_pred CCCcccc
Q 018571 250 EVPREAF 256 (354)
Q Consensus 250 ~~s~~al 256 (354)
.+++++.
T Consensus 261 ~i~~~~~ 267 (319)
T cd00116 261 DITDDGA 267 (319)
T ss_pred CCCcHHH
Confidence 9865444
No 9
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=1.9e-06 Score=79.27 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=74.6
Q ss_pred CccEEEeecCCCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 115 ~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
.++.+|-++|.|.-+|+..+-. ++.|+.|.+ .+.|.|+.-|+.-.++|+.|+|+||++|||.|+..|.. .++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 4788999999999999999987 999999999 99999999999999999999999999999999999987 68999
Q ss_pred EeeCCCc
Q 018571 191 DVEGDSW 197 (354)
Q Consensus 191 ~L~ls~~ 197 (354)
.|.+.+.
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 9877654
No 10
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=2.9e-05 Score=83.73 Aligned_cols=59 Identities=27% Similarity=0.301 Sum_probs=52.3
Q ss_pred CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCC
Q 018571 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSP 172 (354)
Q Consensus 114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~ 172 (354)
.+|++||++|. .++..-...++..+|.|++|.+ .+.+.-...+..+.|+|.+||++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn 184 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN 184 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC
Confidence 78999999998 7888888999999999999999 55555588999999999999999975
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.80 E-value=4e-05 Score=75.53 Aligned_cols=135 Identities=15% Similarity=0.139 Sum_probs=86.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHH------------hCCCCcEEEE---eecHHH---HHHHHhcCCCCCEEEecCCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQ------------MCKSLKAVDI---RITAAG---VSEFLLHCHSLETLRCGGSPRSN 175 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~------------~C~~L~~LdL---~ITd~g---l~~La~~Cp~Le~L~L~gC~~It 175 (354)
.+|++|.|.+|+++..|=..|+. .-++|+++.. ++-|.| +..+.+.+|.|+.+.+.. ..|.
T Consensus 120 ~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~ 198 (382)
T KOG1909|consen 120 TDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIR 198 (382)
T ss_pred cCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEec-cccc
Confidence 56777777777666555444332 1356666666 444544 455556788999998885 4555
Q ss_pred HHHHHHH---HhcCCCCcEeeCCCccccchhhh--h---ccCccccccc--cCCCCHHHHHHH----HhcCCcceecCCC
Q 018571 176 HAARRCL---GILKPKLNDVEGDSWEELVNTDI--G---HGAQSLRWFV--WPNIDKDSIEMM----STECPRIIVNPKP 241 (354)
Q Consensus 176 D~sL~~L---a~~cp~L~~L~ls~~~~td~~~i--~---~~~~~L~~L~--C~~ITD~~l~~L----~~~Cp~L~~~p~~ 241 (354)
..++.++ ..+||+|+.||+...-.+..|.+ + ...++|++|+ -.++.+.|..++ ....|.|++
T Consensus 199 ~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~v---- 274 (382)
T KOG1909|consen 199 PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEV---- 274 (382)
T ss_pred CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCce----
Confidence 5555443 35799999999876666655533 3 3345677776 336666665544 456788888
Q ss_pred CceeecCCCCCccc
Q 018571 242 SPFGFRGFEVPREA 255 (354)
Q Consensus 242 ~~L~l~gC~~s~~a 255 (354)
+.|.||.+++++
T Consensus 275 --l~l~gNeIt~da 286 (382)
T KOG1909|consen 275 --LELAGNEITRDA 286 (382)
T ss_pred --eccCcchhHHHH
Confidence 999999976655
No 12
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.72 E-value=3.1e-05 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCCCEEEecCCCCCcHHHHHHHHh
Q 018571 160 CHSLETLRCGGSPRSNHAARRCLGI 184 (354)
Q Consensus 160 Cp~Le~L~L~gC~~ItD~sL~~La~ 184 (354)
||+|++|+|++|..|||.++.+|+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 8999999999999999999999986
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3.8e-05 Score=77.60 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=82.4
Q ss_pred CCccEEEeecCC-CCHHHHHHHHHhCCCCcEEEE------eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 114 SSWEILDISGSD-VSDFGLVKVAQMCKSLKAVDI------RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 114 ~~L~~LdLs~C~-ITD~gL~~la~~C~~L~~LdL------~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
++++.||||++- -.-.-+..|+...|+|+.|+| ..++.-... ..+.|+.|.|++|. ++-..+..+...|
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CG-ls~k~V~~~~~~f 221 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCG-LSWKDVQWILLTF 221 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCC-CCHHHHHHHHHhC
Confidence 666666666652 223445566666666666666 111111111 34556666777774 4466677777778
Q ss_pred CCCcEeeCCCcc-ccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCcccccccc
Q 018571 187 PKLNDVEGDSWE-ELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDIT 260 (354)
Q Consensus 187 p~L~~L~ls~~~-~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~ 260 (354)
|.|+.|++.+.. ++....-....++|++|+ -.++-|..........|.|.. +++..|.+++-+.|.+.
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~------Lnls~tgi~si~~~d~~ 292 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ------LNLSSTGIASIAEPDVE 292 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh------hhccccCcchhcCCCcc
Confidence 888888776653 222222234456777777 344444444456677888888 99999998888877773
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.63 E-value=2.9e-05 Score=70.16 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=30.0
Q ss_pred CccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcE
Q 018571 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLND 191 (354)
Q Consensus 115 ~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~ 191 (354)
.+++|+|.|++|+. +..+...+.+|+.||| .|+. +.-+. ++++|++|++++ ..|++-+ ..+..+||+|++
T Consensus 20 ~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSN-NRISSIS-EGLDKNLPNLQE 92 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT--E
T ss_pred cccccccccccccc--ccchhhhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCC-CCCCccc-cchHHhCCcCCE
Confidence 45666666665554 2334434566666666 4432 12222 356666666664 3343321 123334666666
Q ss_pred eeCCCccccchhhh--hccCccccccc-c-CCCC--HHHHHHHHhcCCccee
Q 018571 192 VEGDSWEELVNTDI--GHGAQSLRWFV-W-PNID--KDSIEMMSTECPRIIV 237 (354)
Q Consensus 192 L~ls~~~~td~~~i--~~~~~~L~~L~-C-~~IT--D~~l~~L~~~Cp~L~~ 237 (354)
|++++..+.+-+.+ -..+++|+.|+ + ..|+ ..--..+...||+|+.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 66655554443322 12344554444 0 0111 1224556677777777
No 15
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.37 E-value=0.00069 Score=67.00 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=97.8
Q ss_pred CCccEEEeecCCCCHHHHH---HHHHhCCCCcEEEE---eecHHHHHHHH---hcCCCCCEEEecCCCCCcHHHHHHHHh
Q 018571 114 SSWEILDISGSDVSDFGLV---KVAQMCKSLKAVDI---RITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCLGI 184 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~---~la~~C~~L~~LdL---~ITd~gl~~La---~~Cp~Le~L~L~gC~~ItD~sL~~La~ 184 (354)
+.|+.+..+.+.+.|.|-. .+.+.+|.|+.+.+ .|...|+.+++ .+||+|++|||..-. .|-.+-.+|+.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHH
Confidence 7899999999877766654 45567899999999 77777775554 589999999998754 44444445554
Q ss_pred ---cCCCCcEeeCCCccccchhhh------hccCccccccc--cCCCCHHHHHHHHh---cCCcceecCCCCceeecCCC
Q 018571 185 ---LKPKLNDVEGDSWEELVNTDI------GHGAQSLRWFV--WPNIDKDSIEMMST---ECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 185 ---~cp~L~~L~ls~~~~td~~~i------~~~~~~L~~L~--C~~ITD~~l~~L~~---~Cp~L~~~p~~~~L~l~gC~ 250 (354)
..|+|+.|+++.|-+.+.|.+ -.+.++|+.|. ...||-++...++. .-|.|.. |++.||.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k------LnLngN~ 309 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEK------LNLNGNR 309 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHH------hcCCccc
Confidence 356777889999988888864 34578888887 67888888776643 3577777 9999999
Q ss_pred C
Q 018571 251 V 251 (354)
Q Consensus 251 ~ 251 (354)
.
T Consensus 310 l 310 (382)
T KOG1909|consen 310 L 310 (382)
T ss_pred c
Confidence 7
No 16
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.16 E-value=0.0013 Score=71.08 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=115.8
Q ss_pred CCHHHHHHhhcCCccEEEeecC-CCCHHHHH-----------HHH--HhCCCCcEEEE----eecHHHHHHHHhcCCCCC
Q 018571 103 LADDVIMSLADSSWEILDISGS-DVSDFGLV-----------KVA--QMCKSLKAVDI----RITAAGVSEFLLHCHSLE 164 (354)
Q Consensus 103 ltD~~L~~la~~~L~~LdLs~C-~ITD~gL~-----------~la--~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le 164 (354)
+....+..+....|++|.|++. .+...... .+. ..=.+|++||+ .+...=...++..+|.|+
T Consensus 72 ~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~ 151 (699)
T KOG3665|consen 72 LQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLR 151 (699)
T ss_pred cchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccc
Confidence 4556666666666999999886 33322222 111 11369999999 555566888999999999
Q ss_pred EEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccch-hhh-----------------------hccCccccccc---c
Q 018571 165 TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVN-TDI-----------------------GHGAQSLRWFV---W 217 (354)
Q Consensus 165 ~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~-~~i-----------------------~~~~~~L~~L~---C 217 (354)
+|.++|=.-..|+ ...+..+.|+|..||++++.+++- |+. -..+++|+.|+ -
T Consensus 152 sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 152 SLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred eEEecCceecchh-HHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 9999986666665 777888999999999999988874 321 13456777776 2
Q ss_pred CCCCHH-HHH---HHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcccccccc
Q 018571 218 PNIDKD-SIE---MMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPS 272 (354)
Q Consensus 218 ~~ITD~-~l~---~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~~~~~ 272 (354)
.+.++. -+. .....+|+|+. ||..|..+..+.+..+....|.++++...
T Consensus 231 ~~~~~~~ii~qYlec~~~LpeLrf------LDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 231 KNNDDTKIIEQYLECGMVLPELRF------LDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ccccchHHHHHHHHhcccCccccE------EecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 222222 111 12356899999 99999889999999999999999987654
No 17
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00053 Score=63.35 Aligned_cols=89 Identities=24% Similarity=0.292 Sum_probs=74.6
Q ss_pred CCHHHHHHhhc-CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcH
Q 018571 103 LADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNH 176 (354)
Q Consensus 103 ltD~~L~~la~-~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD 176 (354)
|..+++..+.+ +.++.|.+.+| .+.|.||..++..-++|+.|+| +|||.|+..|- ..++|+.|.+.+-+.+..
T Consensus 113 I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 113 IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCchhhhc
Confidence 66778888888 99999999999 9999999999999999999999 99999999987 589999999998877765
Q ss_pred HHHH--HHHhcCCCCcEe
Q 018571 177 AARR--CLGILKPKLNDV 192 (354)
Q Consensus 177 ~sL~--~La~~cp~L~~L 192 (354)
-... .|-.-+|+++..
T Consensus 192 ~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 192 LELVQRQLEEALPKCDIV 209 (221)
T ss_pred hHHHHHHHHHhCccccee
Confidence 3332 344557777654
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.94 E-value=8.1e-05 Score=67.24 Aligned_cols=134 Identities=14% Similarity=0.172 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHh--CCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCcccc
Q 018571 126 VSDFGLVKVAQM--CKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEEL 200 (354)
Q Consensus 126 ITD~gL~~la~~--C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~t 200 (354)
+|-+.+..++.. |-++++|+| .|+. |..+...+.+|++|++++|.-.+=+ .+. .+++|+.|+++...++
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~---~l~-~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKLE---GLP-GLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--T---T-----TT--EEE--SS---
T ss_pred cccccccccccccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCcccc---Ccc-ChhhhhhcccCCCCCC
Confidence 455666666543 567899999 5544 5667666889999999988533322 333 3799999999998887
Q ss_pred chhh-hhccCccccccc--cCCCCHHH-HHHHHhcCCcceecCCCCceeecCCCCCccc--cccccCCCCcccccccc
Q 018571 201 VNTD-IGHGAQSLRWFV--WPNIDKDS-IEMMSTECPRIIVNPKPSPFGFRGFEVPREA--FPDITLDDPFVNDIDPS 272 (354)
Q Consensus 201 d~~~-i~~~~~~L~~L~--C~~ITD~~-l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~a--l~~v~~~~~~v~~~~~~ 272 (354)
+.+. +...+++|+.|. -.+|.+-. +..+ ..||+|++ +++.|.|++... -..|....|.++.+|..
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L-~~l~~L~~------L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNKISDLNELEPL-SSLPKLRV------LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS---SCCCCGGG-GG-TT--E------EE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ccccchHHhCCcCCEEECcCCcCCChHHhHHH-HcCCCcce------eeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 7542 345688999987 33444422 3334 57999999 999999965432 23444556666666665
No 19
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.76 E-value=0.0011 Score=41.06 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.3
Q ss_pred CCccEEEeecC-CCCHHHHHHHHH
Q 018571 114 SSWEILDISGS-DVSDFGLVKVAQ 136 (354)
Q Consensus 114 ~~L~~LdLs~C-~ITD~gL~~la~ 136 (354)
++|++|+|++| +|||.|+..|++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHhc
Confidence 68999999999 999999999985
No 20
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.64 E-value=0.002 Score=71.44 Aligned_cols=15 Identities=0% Similarity=0.014 Sum_probs=8.1
Q ss_pred hcCCcceecCCCCceeecCCC
Q 018571 230 TECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 230 ~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
..+++|+. +++.+|.
T Consensus 305 ~~l~~L~~------L~l~~n~ 319 (968)
T PLN00113 305 IQLQNLEI------LHLFSNN 319 (968)
T ss_pred cCCCCCcE------EECCCCc
Confidence 34555555 5555555
No 21
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.53 E-value=0.0035 Score=69.43 Aligned_cols=127 Identities=14% Similarity=0.035 Sum_probs=55.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++|.++...-..+.. +++|++|+| .++...-..+ .++++|++|++++|.- ++..-..+. ++++|+
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l-~~~~p~~l~-~l~~L~ 287 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKL-SGPIPPSIF-SLQKLI 287 (968)
T ss_pred CCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCee-eccCchhHh-hccCcC
Confidence 45555555555444322222332 556666665 3332221222 2455666666665532 111111122 345666
Q ss_pred EeeCCCccccchh-hhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNT-DIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~-~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+|+++++...... ..-..+++|+.|+ ...++...- .....+|+|+. +++.+|.+
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~------L~L~~n~l 344 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQV------LQLWSNKF 344 (968)
T ss_pred EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCE------EECcCCCC
Confidence 6666555433211 0113345555554 222322211 12235566666 66666654
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.43 E-value=0.0027 Score=72.30 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=53.4
Q ss_pred CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCC
Q 018571 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 188 (354)
Q Consensus 114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~ 188 (354)
++|+.|+|++| .+..-. ..+. .+++|+.|+| .++. +-.-. ++++|++|++++|..+.. +....++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP-~si~-~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~-----~p~~~~n 847 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELP-SSIQ-NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRT-----FPDISTN 847 (1153)
T ss_pred ccchheeCCCCCCccccC-hhhh-CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcccc-----ccccccc
Confidence 45666666666 322211 1122 3666666666 1111 00000 356666666666655432 1122345
Q ss_pred CcEeeCCCccccchhhhhccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 189 LNDVEGDSWEELVNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 189 L~~L~ls~~~~td~~~i~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
|+.|+++++.+...-..-..+++|+.|+ |.+++.- ..-...++.|+. +++.+|+
T Consensus 848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l--~~~~~~L~~L~~------L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV--SLNISKLKHLET------VDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc--CcccccccCCCe------eecCCCc
Confidence 5555555544332111112345555554 5555531 112234455555 6666665
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0013 Score=66.83 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=76.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eec-HHHHHHHHhcCCCCCEEEecCCCCC--cHHHHHHHHhcCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RIT-AAGVSEFLLHCHSLETLRCGGSPRS--NHAARRCLGILKP 187 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~IT-d~gl~~La~~Cp~Le~L~L~gC~~I--tD~sL~~La~~cp 187 (354)
..|+.+.|.+|.|.+.|....+..|++++.||| -++ =..|..|++..|+|+.|+|+.-... +++- .-...+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~ 197 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTLLLS 197 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc---chhhhh
Confidence 678999999999999999888888999999999 333 3678999999999999999864211 1110 111468
Q ss_pred CCcEeeCCCccccch--hhhhccCccccccc
Q 018571 188 KLNDVEGDSWEELVN--TDIGHGAQSLRWFV 216 (354)
Q Consensus 188 ~L~~L~ls~~~~td~--~~i~~~~~~L~~L~ 216 (354)
+|+.|.+++|..+-. +-+..++++|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~ 228 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLY 228 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhh
Confidence 899999998877633 33467788888876
No 24
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.92 E-value=0.0038 Score=65.65 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=70.6
Q ss_pred CCCCcEEEE------eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCc----cccchhhhhc
Q 018571 138 CKSLKAVDI------RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSW----EELVNTDIGH 207 (354)
Q Consensus 138 C~~L~~LdL------~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~----~~td~~~i~~ 207 (354)
|++|+.||| ++....+..| ..|++|+|+.- +|+.-.- ..-....+|+.||++.. .+-|.++...
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~N-si~~l~e-~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHN-SIDHLAE-GAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred cccceeEeccccccccCChhHHHHH----HHhhhhccccc-chHHHHh-hHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 777777777 3334444433 34777777642 2221111 11123678888888753 3445555557
Q ss_pred cCccccccc-----cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC---CCccccccccCCCCccc
Q 018571 208 GAQSLRWFV-----WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE---VPREAFPDITLDDPFVN 267 (354)
Q Consensus 208 ~~~~L~~L~-----C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~---~s~~al~~v~~~~~~v~ 267 (354)
|+++|+.|. -..|+..+.. +.+.|+. ||+.+-+ +-.+|+..+.+....++
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfs----gl~~LE~------LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFS----GLEALEH------LDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred cchhhhheeecCceeeecchhhhc----cCcccce------ecCCCCcceeecccccccchhhhhhhc
Confidence 788888886 4556666654 6688999 9999988 66788877766544433
No 25
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.012 Score=57.69 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=58.3
Q ss_pred CCccEEEeecCCCCHH-HHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDF-GLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~-gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L 189 (354)
+.++.|||.++.|+|= -+..|....|.|+.|+| .+. ..|..+.--..+|++|-|.|. .+.=..+.......|++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceEEEEEcCC-CCChhhhhhhhhcchhh
Confidence 4555555555555542 34445555555555555 111 112222112345555555542 23333344444555666
Q ss_pred cEeeCCCc---cc-cchhhhhccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 190 NDVEGDSW---EE-LVNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 190 ~~L~ls~~---~~-td~~~i~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
+.|+++.. .. .|+--+....+.++.|+ |...-=..+..+.+..|++.. +-+-.||
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s------v~v~e~P 210 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS------VFVCEGP 210 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh------eeeecCc
Confidence 65544332 11 11111122222333333 443333445566777777776 5566666
No 26
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.57 E-value=0.01 Score=35.75 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=17.2
Q ss_pred CCCCCEEEecCCCCCcHHHHHHHHh
Q 018571 160 CHSLETLRCGGSPRSNHAARRCLGI 184 (354)
Q Consensus 160 Cp~Le~L~L~gC~~ItD~sL~~La~ 184 (354)
|++|++|+|++|. ++|.++.+|+.
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhCC
Confidence 6788888888876 88888888763
No 27
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.47 E-value=0.0048 Score=64.04 Aligned_cols=162 Identities=14% Similarity=0.159 Sum_probs=109.0
Q ss_pred CCCHHHHHHhhc-----CCccEEEeecCCCCHHHHHHHHHhCCC----CcEEEE---eecHHHHHHHH---hcCCCCCEE
Q 018571 102 LLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQMCKS----LKAVDI---RITAAGVSEFL---LHCHSLETL 166 (354)
Q Consensus 102 ~ltD~~L~~la~-----~~L~~LdLs~C~ITD~gL~~la~~C~~----L~~LdL---~ITd~gl~~La---~~Cp~Le~L 166 (354)
.+.|.....++. ++|+.|+++++.++|.|...+....+. |+.|++ .+|+.|-..++ ..+..|+.|
T Consensus 98 ~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l 177 (478)
T KOG4308|consen 98 RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTEL 177 (478)
T ss_pred ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHH
Confidence 356666666654 889999999999999999999887654 455555 77877755554 347888888
Q ss_pred EecCCCCCcHHHHHHHHhcC-------CCCcEeeCCCccccchhh------hhccCccccccc--cCCCCHHHHHHHHhc
Q 018571 167 RCGGSPRSNHAARRCLGILK-------PKLNDVEGDSWEELVNTD------IGHGAQSLRWFV--WPNIDKDSIEMMSTE 231 (354)
Q Consensus 167 ~L~gC~~ItD~sL~~La~~c-------p~L~~L~ls~~~~td~~~------i~~~~~~L~~L~--C~~ITD~~l~~L~~~ 231 (354)
++.-|..+ +.+...+.... ..+++|.+.++.+++... +...-..+..++ |..+.|.++..+...
T Consensus 178 ~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~ 256 (478)
T KOG4308|consen 178 DLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPC 256 (478)
T ss_pred HHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHH
Confidence 99888766 44554444333 357778888888776543 233333355566 888899888888765
Q ss_pred CCcc----eecCCCCceeecCCCCCccc---cccccCCCCcccccc
Q 018571 232 CPRI----IVNPKPSPFGFRGFEVPREA---FPDITLDDPFVNDID 270 (354)
Q Consensus 232 Cp~L----~~~p~~~~L~l~gC~~s~~a---l~~v~~~~~~v~~~~ 270 (354)
.+.. +. +++.+|.++..+ ++.+...++.++.+.
T Consensus 257 l~~~~~~l~~------l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~ 296 (478)
T KOG4308|consen 257 LSVLSETLRV------LDLSRNSITEKGVRDLAEVLVSCRQLEELS 296 (478)
T ss_pred hcccchhhhh------hhhhcCCccccchHHHHHHHhhhHHHHHhh
Confidence 5544 66 888888865444 445555555554433
No 28
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.39 E-value=0.009 Score=35.97 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=18.6
Q ss_pred CCccEEEeecCCCCHHHHHHHHH
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQ 136 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~ 136 (354)
++|++|+|++|+|+|+|+..|++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhCC
Confidence 57899999999999999998874
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.33 E-value=0.0022 Score=47.11 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=34.3
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE------eecHHHHHHHHhcCCCCCEEEecCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI------RITAAGVSEFLLHCHSLETLRCGGSP 172 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL------~ITd~gl~~La~~Cp~Le~L~L~gC~ 172 (354)
|+|+.|++++|+++.-.-..+. .+++|++|+| .|.... ..++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS-NLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT-TGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHc-CCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCc
Confidence 5678888888865543332333 4788888888 333322 2467888888888763
No 30
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.60 E-value=0.013 Score=63.11 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=56.7
Q ss_pred CHHHHHHhhcCCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE------eecHHHHHHHHhcCCCCCEEEecCCCCCcHH
Q 018571 104 ADDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI------RITAAGVSEFLLHCHSLETLRCGGSPRSNHA 177 (354)
Q Consensus 104 tD~~L~~la~~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL------~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~ 177 (354)
-|+.+..+ +.+++|||+.+++++.. .|. +|++|++||| .|..-+. .+|. |+.|++.+-..-
T Consensus 179 mD~SLqll--~ale~LnLshNk~~~v~--~Lr-~l~~LkhLDlsyN~L~~vp~l~~----~gc~-L~~L~lrnN~l~--- 245 (1096)
T KOG1859|consen 179 MDESLQLL--PALESLNLSHNKFTKVD--NLR-RLPKLKHLDLSYNCLRHVPQLSM----VGCK-LQLLNLRNNALT--- 245 (1096)
T ss_pred HHHHHHHH--HHhhhhccchhhhhhhH--HHH-hcccccccccccchhccccccch----hhhh-heeeeecccHHH---
Confidence 35555544 78999999999999877 444 5999999999 3333222 2466 999999875332
Q ss_pred HHHHHHhcCCCCcEeeCCCccccc
Q 018571 178 ARRCLGILKPKLNDVEGDSWEELV 201 (354)
Q Consensus 178 sL~~La~~cp~L~~L~ls~~~~td 201 (354)
.+..|.. +..|+.||++..-+.+
T Consensus 246 tL~gie~-LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 246 TLRGIEN-LKSLYGLDLSYNLLSE 268 (1096)
T ss_pred hhhhHHh-hhhhhccchhHhhhhc
Confidence 3444443 6788888886554444
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=94.28 E-value=0.059 Score=61.58 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=48.0
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L 189 (354)
.+|+.|+|.+|++..- -.-...+++|+.|+| .++. +..+. .+++|++|+|++|..+..-- ..+ .++++|
T Consensus 611 ~~L~~L~L~~s~l~~L--~~~~~~l~~Lk~L~Ls~~~~l~~--ip~ls-~l~~Le~L~L~~c~~L~~lp-~si-~~L~~L 683 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKL--WDGVHSLTGLRNIDLRGSKNLKE--IPDLS-MATNLETLKLSDCSSLVELP-SSI-QYLNKL 683 (1153)
T ss_pred cCCcEEECcCcccccc--ccccccCCCCCEEECCCCCCcCc--CCccc-cCCcccEEEecCCCCccccc-hhh-hccCCC
Confidence 3566666666644321 000134677777777 1111 11122 46777777777776554311 112 346777
Q ss_pred cEeeCCCccccchhhhhccCccccccc
Q 018571 190 NDVEGDSWEELVNTDIGHGAQSLRWFV 216 (354)
Q Consensus 190 ~~L~ls~~~~td~~~i~~~~~~L~~L~ 216 (354)
+.|++++|.....--.+..+++|+.|+
T Consensus 684 ~~L~L~~c~~L~~Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGINLKSLYRLN 710 (1153)
T ss_pred CEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence 777777664322111112445555554
No 32
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=0.025 Score=55.01 Aligned_cols=111 Identities=11% Similarity=0.089 Sum_probs=67.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEEeecH-HHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEe
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIRITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDV 192 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL~ITd-~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L 192 (354)
.+.+.|++.||+++|..+ ...+|.|+.|.|.++. .++.-+. +|.+|++|.|.. ..|.|-.-..--.++|.|+.|
T Consensus 19 ~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~pl~-rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAPLQ-RCTRLKELYLRK-NCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchhHH-HHHHHHHHHHHh-cccccHHHHHHHhcCchhhhH
Confidence 456778888888888654 4557888888884443 2344444 688888888864 234432222233457888877
Q ss_pred eCCC--ccccch----hhhhccCccccccccCCCCHHHHHHHH
Q 018571 193 EGDS--WEELVN----TDIGHGAQSLRWFVWPNIDKDSIEMMS 229 (354)
Q Consensus 193 ~ls~--~~~td~----~~i~~~~~~L~~L~C~~ITD~~l~~L~ 229 (354)
-+.. |..... ..+-..+++|+.|+-..||.+-++.-.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~AL 136 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEAL 136 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHH
Confidence 4432 221111 112456778888887777777766544
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.59 E-value=0.021 Score=62.88 Aligned_cols=121 Identities=15% Similarity=0.194 Sum_probs=62.9
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---e---ecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---R---ITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP 187 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~---ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp 187 (354)
+.|+.|.+.++.+||..+-.+.. .++|+.|+| + +.+..+. ..+.|++|+|+|-. ++.-. ..++ +|+
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGNk-L~~Lp-~tva-~~~ 430 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGNK-LTTLP-DTVA-NLG 430 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhcc-ccceeeeeecccccccCCHHHHh----chHHhHHHhcccch-hhhhh-HHHH-hhh
Confidence 34666677777777777666654 677777777 2 3344433 34557777777643 22111 1222 255
Q ss_pred CCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 188 KLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 188 ~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
.|++|-..+..+...-. -..++.|+.++ |.+++.-.+...... |+|++ ||+.|-.
T Consensus 431 ~L~tL~ahsN~l~~fPe-~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~Lky------LdlSGN~ 487 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLLSFPE-LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKY------LDLSGNT 487 (1081)
T ss_pred hhHHHhhcCCceeechh-hhhcCcceEEecccchhhhhhhhhhCCC-cccce------eeccCCc
Confidence 55555333222221111 12334555555 666665555544433 66666 6666655
No 34
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.12 E-value=0.11 Score=32.61 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMC 138 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C 138 (354)
++|++|||++|.|+|+|...+++..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 5789999999999999999988743
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.47 E-value=0.17 Score=55.93 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=34.7
Q ss_pred hcCCCCCHHHHHHhhc-CCccEEEeecCC---CCHHHHHHHHHhCCCCcEEEE
Q 018571 98 RRRKLLADDVIMSLAD-SSWEILDISGSD---VSDFGLVKVAQMCKSLKAVDI 146 (354)
Q Consensus 98 ~~~~~ltD~~L~~la~-~~L~~LdLs~C~---ITD~gL~~la~~C~~L~~LdL 146 (354)
-....+||..+..|.. ++|+.|+|+++. +.+..+..+ +.|++|+|
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl----e~LeeL~L 414 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL----EELEELNL 414 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccccCCHHHHhch----HHhHHHhc
Confidence 3456799999999887 999999999983 566665544 45778887
No 36
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.10 E-value=0.066 Score=51.18 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=57.7
Q ss_pred CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE---eecH-HHHHHHHhcCCCCCEEEecCCC--CCcHHHHHHHHhcC
Q 018571 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI---RITA-AGVSEFLLHCHSLETLRCGGSP--RSNHAARRCLGILK 186 (354)
Q Consensus 114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL---~ITd-~gl~~La~~Cp~Le~L~L~gC~--~ItD~sL~~La~~c 186 (354)
|+|+.|.++++ .--..||..++..||+|++|++ +|.+ ..+..+. ..++|.+|+++.|. +.+|. -..+..-.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll 142 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDY-REKVFLLL 142 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh-hhcchhhhhcccCCccccccH-HHHHHHHh
Confidence 78899999988 4445688888988999999999 5553 4455554 46779999999985 44443 44566667
Q ss_pred CCCcEeeC
Q 018571 187 PKLNDVEG 194 (354)
Q Consensus 187 p~L~~L~l 194 (354)
|+|+.|+-
T Consensus 143 ~~L~~LD~ 150 (260)
T KOG2739|consen 143 PSLKYLDG 150 (260)
T ss_pred hhhccccc
Confidence 88888753
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=91.18 E-value=0.23 Score=34.54 Aligned_cols=38 Identities=13% Similarity=-0.046 Sum_probs=22.1
Q ss_pred CCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccc
Q 018571 161 HSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELV 201 (354)
Q Consensus 161 p~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td 201 (354)
++|++|+++++ ++++ +...-.+|++|+.|++++..++|
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence 46777777765 4444 23312357777777777766654
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=91.04 E-value=0.13 Score=35.73 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=7.8
Q ss_pred cCCCCCEEEecCC
Q 018571 159 HCHSLETLRCGGS 171 (354)
Q Consensus 159 ~Cp~Le~L~L~gC 171 (354)
+|++|++|+++++
T Consensus 22 ~l~~L~~L~l~~N 34 (44)
T PF12799_consen 22 NLPNLETLNLSNN 34 (44)
T ss_dssp TCTTSSEEEETSS
T ss_pred CCCCCCEEEecCC
Confidence 5666666666655
No 39
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.00 E-value=0.13 Score=50.22 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=6.7
Q ss_pred HHHHHhcCCccee
Q 018571 225 IEMMSTECPRIIV 237 (354)
Q Consensus 225 l~~L~~~Cp~L~~ 237 (354)
-..+.+-.|+|+.
T Consensus 109 R~~VLR~LPnLkK 121 (388)
T KOG2123|consen 109 RRKVLRVLPNLKK 121 (388)
T ss_pred HHHHHHHcccchh
Confidence 3344455555555
No 40
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=89.41 E-value=0.1 Score=55.38 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=48.3
Q ss_pred cCCCCcEeeCCCcccc-chhhhhccCccccccc-----cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC--------
Q 018571 185 LKPKLNDVEGDSWEEL-VNTDIGHGAQSLRWFV-----WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE-------- 250 (354)
Q Consensus 185 ~cp~L~~L~ls~~~~t-d~~~i~~~~~~L~~L~-----C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~-------- 250 (354)
++|+|+.|++....+- .+|.-..|+++|+.|. -..++|-+.- .|.+++. +++..-.
T Consensus 219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy----~l~kme~------l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY----GLEKMEH------LNLETNRLQAVNEGW 288 (873)
T ss_pred hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee----eecccce------eecccchhhhhhccc
Confidence 4778888777554432 2344456666666654 4455554332 4556666 6664444
Q ss_pred -CCccccccccCCCCccccccccccccc
Q 018571 251 -VPREAFPDITLDDPFVNDIDPSAWAVP 277 (354)
Q Consensus 251 -~s~~al~~v~~~~~~v~~~~~~~W~v~ 277 (354)
..-..|+.+-+..-.|..+-+.+|...
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhc
Confidence 122345566666666777888888764
No 41
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.03 E-value=0.16 Score=52.94 Aligned_cols=58 Identities=7% Similarity=-0.119 Sum_probs=28.9
Q ss_pred CCCcHHHHHHHHhcCCCC----cEeeCCCccccchhhh-----hccCccccccc--cCCCCHHHHHHHH
Q 018571 172 PRSNHAARRCLGILKPKL----NDVEGDSWEELVNTDI-----GHGAQSLRWFV--WPNIDKDSIEMMS 229 (354)
Q Consensus 172 ~~ItD~sL~~La~~cp~L----~~L~ls~~~~td~~~i-----~~~~~~L~~L~--C~~ITD~~l~~L~ 229 (354)
.++.|.+++.+....+.+ +++++..+.+++.|.. -..|+.++.+. +..++|.++..+.
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~ 311 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLL 311 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHH
Confidence 344555555544433333 4555555555554431 23344555554 5666666655443
No 42
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.75 E-value=0.14 Score=48.96 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=57.2
Q ss_pred CccEEEeecCCCCHHHHHHHHHh--CCCCcEEEE--e--ecHHHHHHHHhcCCCCCEEEecCCCCCcH-HHHHHHHhcCC
Q 018571 115 SWEILDISGSDVSDFGLVKVAQM--CKSLKAVDI--R--ITAAGVSEFLLHCHSLETLRCGGSPRSNH-AARRCLGILKP 187 (354)
Q Consensus 115 ~L~~LdLs~C~ITD~gL~~la~~--C~~L~~LdL--~--ITd~gl~~La~~Cp~Le~L~L~gC~~ItD-~sL~~La~~cp 187 (354)
.|+.|++.++ |+..++.. .|+|+.|.+ + --..|+..+++.||+|++|++++- +|.| ..+..+.. .+
T Consensus 44 ~le~ls~~n~-----gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~-l~ 116 (260)
T KOG2739|consen 44 ELELLSVINV-----GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKE-LE 116 (260)
T ss_pred chhhhhhhcc-----ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhh-hc
Confidence 4455555555 33333332 578888888 2 345688899999999999999974 4443 33444443 56
Q ss_pred CCcEeeCCCccccc---hhh-hhccCccccccc
Q 018571 188 KLNDVEGDSWEELV---NTD-IGHGAQSLRWFV 216 (354)
Q Consensus 188 ~L~~L~ls~~~~td---~~~-i~~~~~~L~~L~ 216 (354)
+|..|++..|.++. ... ++.-.++|++|+
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 77777776654432 211 234445555555
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=88.52 E-value=0.061 Score=39.25 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=17.1
Q ss_pred CCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccc
Q 018571 161 HSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEE 199 (354)
Q Consensus 161 p~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~ 199 (354)
|+|++|++++| .++.-.-. .-.++++|++|++++..+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~-~f~~l~~L~~L~l~~N~l 37 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPD-SFSNLPNLETLDLSNNNL 37 (61)
T ss_dssp TTESEEEETSS-TESEECTT-TTTTGTTESEEEETSSSE
T ss_pred CcCcEEECCCC-CCCccCHH-HHcCCCCCCEeEccCCcc
Confidence 45666666665 22211111 112356666666655443
No 44
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=86.62 E-value=0.29 Score=53.93 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=9.9
Q ss_pred CCccEEEeecCCCC
Q 018571 114 SSWEILDISGSDVS 127 (354)
Q Consensus 114 ~~L~~LdLs~C~IT 127 (354)
++|++|+|++|+++
T Consensus 242 ~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 242 PELRTLEVSGNQLT 255 (788)
T ss_pred CCCcEEEecCCccC
Confidence 67777777777555
No 45
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=86.04 E-value=0.26 Score=54.22 Aligned_cols=22 Identities=5% Similarity=0.101 Sum_probs=16.1
Q ss_pred hcCCcceecCCCCceeecCCCCCccccc
Q 018571 230 TECPRIIVNPKPSPFGFRGFEVPREAFP 257 (354)
Q Consensus 230 ~~Cp~L~~~p~~~~L~l~gC~~s~~al~ 257 (354)
..++.|.. +++.|.+++...+.
T Consensus 442 ~~L~~L~~------LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 442 IHLSSETT------VNLEGNPLSERTLQ 463 (788)
T ss_pred hhccCCCe------EECCCCCCCchHHH
Confidence 36778888 99999997655443
No 46
>PLN03150 hypothetical protein; Provisional
Probab=85.81 E-value=0.68 Score=49.65 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=41.6
Q ss_pred ccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEe
Q 018571 116 WEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDV 192 (354)
Q Consensus 116 L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L 192 (354)
++.|+|+++.++..--..+.. +++|+.|+| .++. .+-.-..++++|++|+|+++.- +...-..++ ++++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~l-sg~iP~~l~-~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSF-NGSIPESLG-QLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCC-CCCCchHHh-cCCCCCEE
Confidence 566777776543222223333 677777777 3321 1221224577777777776632 211111233 46777777
Q ss_pred eCCCcc
Q 018571 193 EGDSWE 198 (354)
Q Consensus 193 ~ls~~~ 198 (354)
++++..
T Consensus 496 ~Ls~N~ 501 (623)
T PLN03150 496 NLNGNS 501 (623)
T ss_pred ECcCCc
Confidence 776554
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.63 E-value=9.8 Score=37.44 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=95.6
Q ss_pred CCCCHHHHHHhhc-----CCccEEEeecC---CCCHHHH---H---HHHHhCCCCcEEEE---ee---cHHHHHHHHhcC
Q 018571 101 KLLADDVIMSLAD-----SSWEILDISGS---DVSDFGL---V---KVAQMCKSLKAVDI---RI---TAAGVSEFLLHC 160 (354)
Q Consensus 101 ~~ltD~~L~~la~-----~~L~~LdLs~C---~ITD~gL---~---~la~~C~~L~~LdL---~I---Td~gl~~La~~C 160 (354)
..++.++...+.. .+|+..++++- .+-|+-. . ...-.||+|+.++| .+ +..-+..+..+-
T Consensus 40 NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~ 119 (388)
T COG5238 40 NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSS 119 (388)
T ss_pred CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcC
Confidence 4566666666554 67788888774 3444322 2 12234899998888 22 233344455567
Q ss_pred CCCCEEEecCCCCCc------HHHHHHHH-----hcCCCCcEeeCCCccccchh--hhhccC---ccccccc--cCCCCH
Q 018571 161 HSLETLRCGGSPRSN------HAARRCLG-----ILKPKLNDVEGDSWEELVNT--DIGHGA---QSLRWFV--WPNIDK 222 (354)
Q Consensus 161 p~Le~L~L~gC~~It------D~sL~~La-----~~cp~L~~L~ls~~~~td~~--~i~~~~---~~L~~L~--C~~ITD 222 (354)
..|++|.+++|..-. ..++..++ .+-|.|+++..+....-... ..+.+. ..|+.+- -..|-.
T Consensus 120 t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp 199 (388)
T COG5238 120 TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRP 199 (388)
T ss_pred CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc
Confidence 789999998884211 12334444 34688888765432221111 111111 3555554 556888
Q ss_pred HHHHHHH----hcCCcceecCCCCceeecCCCCCc-------cccccccC-CCCccccccccc
Q 018571 223 DSIEMMS----TECPRIIVNPKPSPFGFRGFEVPR-------EAFPDITL-DDPFVNDIDPSA 273 (354)
Q Consensus 223 ~~l~~L~----~~Cp~L~~~p~~~~L~l~gC~~s~-------~al~~v~~-~~~~v~~~~~~~ 273 (354)
+|+..++ .+|.+|.+ |++..-..+- .++++-+. .+..+.|+-.++
T Consensus 200 egv~~L~~~gl~y~~~Lev------LDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 200 EGVTMLAFLGLFYSHSLEV------LDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred chhHHHHHHHHHHhCccee------eeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 8887774 78999999 9988766433 33444444 555555554443
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=83.38 E-value=2.1 Score=43.92 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=38.5
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L 189 (354)
.++++|++++|.++.-- ..-++|++|++ .++. +.. .-.++|++|++++|..+. .+ -+.|
T Consensus 52 ~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLts--LP~--~LP~nLe~L~Ls~Cs~L~-----sL---P~sL 114 (426)
T PRK15386 52 RASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTT--LPG--SIPEGLEKLTVCHCPEIS-----GL---PESV 114 (426)
T ss_pred cCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCccc--CCc--hhhhhhhheEccCccccc-----cc---cccc
Confidence 77888888888544321 22346888887 2111 110 113578889998887654 12 3456
Q ss_pred cEeeCCC
Q 018571 190 NDVEGDS 196 (354)
Q Consensus 190 ~~L~ls~ 196 (354)
+.|++.+
T Consensus 115 e~L~L~~ 121 (426)
T PRK15386 115 RSLEIKG 121 (426)
T ss_pred ceEEeCC
Confidence 7776654
No 49
>PLN03150 hypothetical protein; Provisional
Probab=83.12 E-value=1.1 Score=48.02 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=50.9
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
+.. ++|+.|+|++|.++..-=..+. .+++|+.|+| .++...=..+. ++++|++|+|+++.. +...=..++...
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls~N~l-~g~iP~~l~~~~ 514 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGNSL-SGRVPAALGGRL 514 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECcCCcc-cccCChHHhhcc
Confidence 444 8999999999976543222344 4999999999 44432222343 799999999998752 211111233333
Q ss_pred CCCcEeeCCC
Q 018571 187 PKLNDVEGDS 196 (354)
Q Consensus 187 p~L~~L~ls~ 196 (354)
.++..+++.+
T Consensus 515 ~~~~~l~~~~ 524 (623)
T PLN03150 515 LHRASFNFTD 524 (623)
T ss_pred ccCceEEecC
Confidence 4555666654
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.97 E-value=6 Score=38.90 Aligned_cols=121 Identities=10% Similarity=0.061 Sum_probs=67.0
Q ss_pred CCccEEEeecCCCCHHH-------HHHHHH-----hCCCCcEEEE---ee---cHHHHHHHHhcCCCCCEEEecCCCCCc
Q 018571 114 SSWEILDISGSDVSDFG-------LVKVAQ-----MCKSLKAVDI---RI---TAAGVSEFLLHCHSLETLRCGGSPRSN 175 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~g-------L~~la~-----~C~~L~~LdL---~I---Td~gl~~La~~Cp~Le~L~L~gC~~It 175 (354)
..|.+|.|++|++...+ +..++. .-|.|+.+.. ++ +-.-..+..+.-.+|+++.+.. ..|.
T Consensus 120 t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIr 198 (388)
T COG5238 120 TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIR 198 (388)
T ss_pred CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcC
Confidence 67777777777544332 222222 1466777666 22 2222233333335777777764 4566
Q ss_pred HHHHHHHH----hcCCCCcEeeCCCccccchhhh--h---ccCccccccc---cCCCCHHHHHHHHhcCCcce
Q 018571 176 HAARRCLG----ILKPKLNDVEGDSWEELVNTDI--G---HGAQSLRWFV---WPNIDKDSIEMMSTECPRII 236 (354)
Q Consensus 176 D~sL~~La----~~cp~L~~L~ls~~~~td~~~i--~---~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~ 236 (354)
..|+..++ .+|+.|+.||+.....+-.|.. + ..-+.|++|. | -++..|+..+.+....+.
T Consensus 199 pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~ 270 (388)
T COG5238 199 PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKF 270 (388)
T ss_pred cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch-hhccccHHHHHHHhhhhc
Confidence 66666554 4688888888765555544432 1 1123566665 5 467777777766555444
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=80.94 E-value=0.94 Score=49.47 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=66.0
Q ss_pred CccEEEeecC--CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCC--CCcHHHHHHHHhcCC
Q 018571 115 SWEILDISGS--DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSP--RSNHAARRCLGILKP 187 (354)
Q Consensus 115 ~L~~LdLs~C--~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~--~ItD~sL~~La~~cp 187 (354)
.|...+.+.+ ..-|.+|+.+ +.|++||| ++++-. .| +.|++|++|||+.-. .+..- .. ..|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll----~ale~LnLshNk~~~v~--~L-r~l~~LkhLDlsyN~L~~vp~l--~~--~gc~ 233 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLL----PALESLNLSHNKFTKVD--NL-RRLPKLKHLDLSYNCLRHVPQL--SM--VGCK 233 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHH----HHhhhhccchhhhhhhH--HH-Hhcccccccccccchhcccccc--ch--hhhh
Confidence 3455666666 3447777765 45899999 777644 34 579999999999632 11111 11 1254
Q ss_pred CCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 188 KLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 188 ~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
|+.|++.+..++.---| ..+++|+.|+ ..-|.+-.-.........|+. |.+.|-|
T Consensus 234 -L~~L~lrnN~l~tL~gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~------L~LeGNP 290 (1096)
T KOG1859|consen 234 -LQLLNLRNNALTTLRGI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV------LWLEGNP 290 (1096)
T ss_pred -heeeeecccHHHhhhhH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHH------HhhcCCc
Confidence 88888877655442211 3445566555 222222222222333345666 7777766
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=80.73 E-value=1 Score=42.06 Aligned_cols=61 Identities=18% Similarity=0.051 Sum_probs=34.1
Q ss_pred CCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCcccc
Q 018571 138 CKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEEL 200 (354)
Q Consensus 138 C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~t 200 (354)
.++|..|.| +||+-+ --|....|+|.+|.|.+-+-..-..+.-++. ||+|+.|-+-+..+.
T Consensus 63 l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPKLEYLTLLGNPVE 126 (233)
T ss_pred ccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhcc-CCccceeeecCCchh
Confidence 567777777 565422 1233445677777777654333344455554 777777755444333
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=80.71 E-value=0.87 Score=45.10 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=69.5
Q ss_pred CCccEEEeecCCCC--HHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCC
Q 018571 114 SSWEILDISGSDVS--DFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 188 (354)
Q Consensus 114 ~~L~~LdLs~C~IT--D~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~ 188 (354)
..|++||||++.|+ |+++.. .|.++.|++ .|+..+ .++ +.++|++|||++-.... +......+-+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL----~Pkir~L~lS~N~i~~v~--nLa-~L~~L~~LDLS~N~Ls~---~~Gwh~KLGN 353 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKL----APKLRRLILSQNRIRTVQ--NLA-ELPQLQLLDLSGNLLAE---CVGWHLKLGN 353 (490)
T ss_pred hhhhhccccccchhhhhhhhhh----ccceeEEeccccceeeeh--hhh-hcccceEeecccchhHh---hhhhHhhhcC
Confidence 56888999998555 444433 588999999 454322 355 68999999999754332 3333445567
Q ss_pred CcEeeCCCccccchhhhhccCccccccc--cCCCCH-HHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 189 LNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDK-DSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 189 L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD-~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
.+.|.+++..+-+-.-+ ..+-+|..|+ -.+|-. +.+..| .+.|-|.+ +.+.+-|+
T Consensus 354 IKtL~La~N~iE~LSGL-~KLYSLvnLDl~~N~Ie~ldeV~~I-G~LPCLE~------l~L~~NPl 411 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLSGL-RKLYSLVNLDLSSNQIEELDEVNHI-GNLPCLET------LRLTGNPL 411 (490)
T ss_pred EeeeehhhhhHhhhhhh-HhhhhheeccccccchhhHHHhccc-ccccHHHH------HhhcCCCc
Confidence 77777765443332110 1223444444 222221 123333 35678888 88887774
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.83 E-value=1.7 Score=43.06 Aligned_cols=125 Identities=16% Similarity=0.124 Sum_probs=79.1
Q ss_pred CccEEEeecCCCCHHHH-HHHHHhCCCCcEEEE---eecH-HHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571 115 SWEILDISGSDVSDFGL-VKVAQMCKSLKAVDI---RITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 189 (354)
Q Consensus 115 ~L~~LdLs~C~ITD~gL-~~la~~C~~L~~LdL---~ITd-~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L 189 (354)
.++-|.+.||.|...|- ..++..|..++.+|| .|+| .-|.+|.++.|.|+.|||+ |..+... +..+..-..+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~-I~~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSD-IKSLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCc-cccCcccccce
Confidence 45678888998887764 567888999999999 7877 5588999999999999999 5554432 33332224578
Q ss_pred cEeeCCCccccc--hhhhhccCccccccc-------cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 190 NDVEGDSWEELV--NTDIGHGAQSLRWFV-------WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 190 ~~L~ls~~~~td--~~~i~~~~~~L~~L~-------C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
++|-+.|+...= ........+.+++|+ =.+++|+.++.+. |.+.. +++.+|+
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s---~~v~t------lh~~~c~ 184 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS---TEVLT------LHQLPCL 184 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc---hhhhh------hhcCCcH
Confidence 887665543211 001112233344443 2345555555433 34555 6677777
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=77.04 E-value=1.3 Score=41.44 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=55.9
Q ss_pred CCHHHHHHhhc----CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHH-HHHHHhcCCCCCEEEecCCCCC
Q 018571 103 LADDVIMSLAD----SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAG-VSEFLLHCHSLETLRCGGSPRS 174 (354)
Q Consensus 103 ltD~~L~~la~----~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~g-l~~La~~Cp~Le~L~L~gC~~I 174 (354)
++|.-+..+-. +.|..|.|++++||+.+= -+.+..|+|+.|.| +|-.-| +.-++ .||.|++|.+-|-+--
T Consensus 49 LtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 49 LTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVE 126 (233)
T ss_pred ccccchhhcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchh
Confidence 56655555544 788999999998885431 13334689999988 333322 55666 6999999999875422
Q ss_pred cHHH-HHHHHhcCCCCcEeeCC
Q 018571 175 NHAA-RRCLGILKPKLNDVEGD 195 (354)
Q Consensus 175 tD~s-L~~La~~cp~L~~L~ls 195 (354)
.-.. ...+....|+|+.||+.
T Consensus 127 ~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 127 HKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cccCceeEEEEecCcceEeehh
Confidence 2111 11233345666666664
No 56
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=73.03 E-value=1.9 Score=23.89 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=9.4
Q ss_pred CCccEEEeecCCCC
Q 018571 114 SSWEILDISGSDVS 127 (354)
Q Consensus 114 ~~L~~LdLs~C~IT 127 (354)
++|+.|+|++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 57899999999665
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=70.55 E-value=2.3 Score=42.25 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=49.9
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
|.++.|++|.+.|+..+= +++ .++|++||| .++ .+.-.-...-|++.|+|++-.--+-+| +.+ +-.|.
T Consensus 307 Pkir~L~lS~N~i~~v~n--La~-L~~L~~LDLS~N~Ls--~~~Gwh~KLGNIKtL~La~N~iE~LSG---L~K-LYSLv 377 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQN--LAE-LPQLQLLDLSGNLLA--ECVGWHLKLGNIKTLKLAQNKIETLSG---LRK-LYSLV 377 (490)
T ss_pred cceeEEeccccceeeehh--hhh-cccceEeecccchhH--hhhhhHhhhcCEeeeehhhhhHhhhhh---hHh-hhhhe
Confidence 899999999997765544 555 899999999 332 222233456789999998743222233 332 34566
Q ss_pred EeeCCCccc
Q 018571 191 DVEGDSWEE 199 (354)
Q Consensus 191 ~L~ls~~~~ 199 (354)
.||+.+..+
T Consensus 378 nLDl~~N~I 386 (490)
T KOG1259|consen 378 NLDLSSNQI 386 (490)
T ss_pred eccccccch
Confidence 777776543
No 58
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=70.12 E-value=4.3 Score=44.74 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=46.8
Q ss_pred CCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchh-hhhccCccccccc--cCCCCH--HHHHHHHhcCCc
Q 018571 160 CHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNT-DIGHGAQSLRWFV--WPNIDK--DSIEMMSTECPR 234 (354)
Q Consensus 160 Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~-~i~~~~~~L~~L~--C~~ITD--~~l~~L~~~Cp~ 234 (354)
+++|+.|++++|. ++. +-. ...+.|+.|+++++..+.-- .+. ..|+.|+ ..+++. .++..+...+|.
T Consensus 345 ~~sL~~L~Ls~N~-L~~--LP~--~lp~~L~~LdLs~N~Lt~LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~ 416 (754)
T PRK15370 345 PPELQVLDVSKNQ-ITV--LPE--TLPPTITTLDVSRNALTNLPENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQ 416 (754)
T ss_pred cCcccEEECCCCC-CCc--CCh--hhcCCcCEEECCCCcCCCCCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCCC
Confidence 4677777777763 221 000 11357777777776554311 111 2345444 223331 234555566778
Q ss_pred ceecCCCCceeecCCCCCccccccc
Q 018571 235 IIVNPKPSPFGFRGFEVPREAFPDI 259 (354)
Q Consensus 235 L~~~p~~~~L~l~gC~~s~~al~~v 259 (354)
+.. +++.+-+++...++.+
T Consensus 417 l~~------L~L~~Npls~~tl~~L 435 (754)
T PRK15370 417 PTR------IIVEYNPFSERTIQNM 435 (754)
T ss_pred ccE------EEeeCCCccHHHHHHH
Confidence 888 8888888776666543
No 59
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.71 E-value=7.6 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=15.9
Q ss_pred CCCCEEEecCCCCCcHHHHHHHHhc
Q 018571 161 HSLETLRCGGSPRSNHAARRCLGIL 185 (354)
Q Consensus 161 p~Le~L~L~gC~~ItD~sL~~La~~ 185 (354)
++|++|+|+++ .++|+|..+|+..
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHH
Confidence 46777777754 5677777776653
No 60
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.73 E-value=16 Score=38.87 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCc--cccchhhhh-ccCccccccc------cCCC
Q 018571 150 AAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSW--EELVNTDIG-HGAQSLRWFV------WPNI 220 (354)
Q Consensus 150 d~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~--~~td~~~i~-~~~~~L~~L~------C~~I 220 (354)
...+..+.++-|.+.+|+|+.-....-+++..|+..-|+|+.|++++. .+.+.-.+. -+...|++|. |...
T Consensus 207 ~~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 207 AAVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred HHHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 345567777888899999988776666778889999999999999875 444433332 3345666664 8888
Q ss_pred CHHH--HHHHHhcCCccee
Q 018571 221 DKDS--IEMMSTECPRIIV 237 (354)
Q Consensus 221 TD~~--l~~L~~~Cp~L~~ 237 (354)
++.+ +.+|....|+|..
T Consensus 287 ~~~s~yv~~i~~~FPKL~~ 305 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLR 305 (585)
T ss_pred hhhHHHHHHHHHhcchhee
Confidence 7766 6788899999988
No 61
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=57.41 E-value=9.8 Score=42.78 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=38.7
Q ss_pred HhCCCCcEEEE-eec---HHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCcccc
Q 018571 136 QMCKSLKAVDI-RIT---AAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEEL 200 (354)
Q Consensus 136 ~~C~~L~~LdL-~IT---d~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~t 200 (354)
..|++|++|-+ .-. ..+-..+..+.|.|++|||++|...+.- =..|+. +-+|++|+++++.+.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L-P~~I~~-Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL-PSSIGE-LVHLRYLDLSDTGIS 608 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC-ChHHhh-hhhhhcccccCCCcc
Confidence 34788888877 221 2222333567899999999998765421 012333 567788888777654
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=56.65 E-value=4.4 Score=23.71 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=10.6
Q ss_pred CccEEEeecCCCC
Q 018571 115 SWEILDISGSDVS 127 (354)
Q Consensus 115 ~L~~LdLs~C~IT 127 (354)
+|++|||++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 5789999999665
No 63
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=56.53 E-value=25 Score=38.95 Aligned_cols=7 Identities=0% Similarity=-0.239 Sum_probs=3.0
Q ss_pred eeecCCC
Q 018571 244 FGFRGFE 250 (354)
Q Consensus 244 L~l~gC~ 250 (354)
|++.++.
T Consensus 393 LdLs~N~ 399 (754)
T PRK15370 393 MQASRNN 399 (754)
T ss_pred HhhccCC
Confidence 4444444
No 64
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=54.75 E-value=1.9 Score=46.67 Aligned_cols=16 Identities=6% Similarity=-0.149 Sum_probs=9.2
Q ss_pred CCCCcEeeCCCccccc
Q 018571 186 KPKLNDVEGDSWEELV 201 (354)
Q Consensus 186 cp~L~~L~ls~~~~td 201 (354)
.++|+.|++++.+++.
T Consensus 244 l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITE 259 (1255)
T ss_pred hhhhheeccCcCceee
Confidence 4566666666655543
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=53.13 E-value=3.7 Score=41.43 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=6.0
Q ss_pred CCccEEEeecC
Q 018571 114 SSWEILDISGS 124 (354)
Q Consensus 114 ~~L~~LdLs~C 124 (354)
.+++.|+++++
T Consensus 95 ~~l~~l~l~~n 105 (414)
T KOG0531|consen 95 KSLEALDLYDN 105 (414)
T ss_pred cceeeeecccc
Confidence 45555555554
No 66
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=51.21 E-value=16 Score=25.57 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCchHHHhHHHHHHhhHHH-HHHhhhHhhcCCCHHHHHHH
Q 018571 55 KPPSLVSLCLGIVGKHLED-IIGDLDEIAINFPVDIKIAI 93 (354)
Q Consensus 55 ~~~sL~~LCi~~i~~~l~~-~i~~l~~~l~~LP~~ik~~l 93 (354)
+++|||++|-..|..|... -|..+ + ||..+++.+
T Consensus 2 k~~SLQ~LCR~~I~~~t~~~~I~~L-P----LP~~Lk~yL 36 (43)
T cd03742 2 KVLSLQDLCCRAIVSCTPVYLIDKL-P----LPVSIKSHL 36 (43)
T ss_pred ccccHHHHHHHHHHHhCCcchhhhC-C----CCHHHHHHH
Confidence 4688999999999998752 12222 3 778777754
No 67
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.32 E-value=25 Score=37.41 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=67.9
Q ss_pred HHHHhhcCCCCCHHHHHHhhc--CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE-----ee-cHHHHHHHHhcCCCC
Q 018571 93 IASIARRRKLLADDVIMSLAD--SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI-----RI-TAAGVSEFLLHCHSL 163 (354)
Q Consensus 93 ll~ll~~~~~ltD~~L~~la~--~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL-----~I-Td~gl~~La~~Cp~L 163 (354)
+...+.++.++... +..+.. |.+..|+|+++ -..=+++..|+..-|+|+.|+| .+ ++.-+..+. ...|
T Consensus 196 i~~~l~~rn~M~~~-L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k--~l~L 272 (585)
T KOG3763|consen 196 ILMVLNKRNCMAAV-LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK--GLPL 272 (585)
T ss_pred chhhcccchhhHHH-HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc--CCCH
Confidence 44555555544332 344444 88999999998 4555688889999999999999 12 222343332 4569
Q ss_pred CEEEecCCCCCcH-----HHHHHHHhcCCCCcEee
Q 018571 164 ETLRCGGSPRSNH-----AARRCLGILKPKLNDVE 193 (354)
Q Consensus 164 e~L~L~gC~~ItD-----~sL~~La~~cp~L~~L~ 193 (354)
++|-+.|-+-.++ +-+.+|-...|+|..||
T Consensus 273 eel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 273 EELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 9999999776654 44667888899999885
No 68
>PF11065 DUF2866: Protein of unknown function (DUF2866); InterPro: IPR021294 This bacterial family of proteins have no known function.
Probab=50.02 E-value=10 Score=28.88 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=32.9
Q ss_pred eeecCCCCCccccccccCCCCcccccccccccccc--ccccCCCCCCCCCCcchHHHHHHH
Q 018571 244 FGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPR--FASMGISTSLLSPNELSMAEKFRL 302 (354)
Q Consensus 244 L~l~gC~~s~~al~~v~~~~~~v~~~~~~~W~v~~--~~~~~~~~~~~~~~~~~~~e~~r~ 302 (354)
+.++||.+|..-.+ |-=.-+-.+.|++.. +.+|+..| ...+|..|||..|.
T Consensus 1 ~~lrgCRvS~Pi~~------PWG~~cRiVEW~i~~~g~~~RrvVp--a~~T~~EIa~~ir~ 53 (65)
T PF11065_consen 1 YNLRGCRVSAPIQQ------PWGRGCRIVEWTIDHDGRISRRVVP--ADSTEAEIAEAIRS 53 (65)
T ss_pred CcccceeecCcccC------CCCCceEEEEEEecCCcceeEEeec--ccCChHHHHHHHHc
Confidence 35889998654433 333346778895433 44455555 47889999999875
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=44.18 E-value=15 Score=36.31 Aligned_cols=39 Identities=13% Similarity=-0.043 Sum_probs=18.1
Q ss_pred hcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccc
Q 018571 158 LHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEE 199 (354)
Q Consensus 158 ~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~ 199 (354)
.++++|+.|+++.+. +++- .......+.|+.|++++..+
T Consensus 160 ~~l~~L~~L~l~~N~-l~~l--~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 160 RNLPNLKNLDLSFND-LSDL--PKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred hccccccccccCCch-hhhh--hhhhhhhhhhhheeccCCcc
Confidence 356666666666553 2221 11111345555555555433
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=42.69 E-value=14 Score=36.53 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=26.7
Q ss_pred CccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC
Q 018571 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS 171 (354)
Q Consensus 115 ~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC 171 (354)
+|+.|+++++++.+.- ..+. .+++|+.|++ .+++-. ......++|+.|++++.
T Consensus 141 nL~~L~l~~N~i~~l~-~~~~-~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~~L~ls~N 196 (394)
T COG4886 141 NLKELDLSDNKIESLP-SPLR-NLPNLKNLDLSFNDLSDLP--KLLSNLSNLNNLDLSGN 196 (394)
T ss_pred hcccccccccchhhhh-hhhh-ccccccccccCCchhhhhh--hhhhhhhhhhheeccCC
Confidence 5666666666444331 1222 2666666666 333322 11114566666666654
No 71
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=42.30 E-value=20 Score=24.98 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.0
Q ss_pred CCchHHHhHHHHHHhhHHH
Q 018571 55 KPPSLVSLCLGIVGKHLED 73 (354)
Q Consensus 55 ~~~sL~~LCi~~i~~~l~~ 73 (354)
.++|||+||=..|..|+..
T Consensus 2 ~v~SLQHLCR~~In~~~~~ 20 (42)
T cd03737 2 SVSTLQHLCRKTVNGHLDS 20 (42)
T ss_pred CcccHHHHHHHHHHHhcCc
Confidence 4689999999999888754
No 72
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=41.39 E-value=19 Score=24.37 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=22.6
Q ss_pred CCchHHHhHHHHHHhhHHHHHHhhhHhhcCCCHHHHHHH
Q 018571 55 KPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAI 93 (354)
Q Consensus 55 ~~~sL~~LCi~~i~~~l~~~i~~l~~~l~~LP~~ik~~l 93 (354)
.++||++||-..|.+++.. +.+.. + -+|..+++-+
T Consensus 2 ~~~sLq~LCR~~Ir~~~~~--~~i~~-L-pLP~~Lk~yL 36 (39)
T cd03717 2 SVRSLQHLCRFVIRQCTRR--DLIDQ-L-PLPRRLKDYL 36 (39)
T ss_pred CCCCHHHHHHHHHHHHccc--ccccc-C-CCCHHHHHHH
Confidence 5789999999999999742 12211 1 2666666543
No 73
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=41.32 E-value=75 Score=32.13 Aligned_cols=80 Identities=18% Similarity=0.091 Sum_probs=60.3
Q ss_pred HHHHHHhhc-CCccEEEeecC---CCCHHHHHHHHHhCCCCcEEEE-------------eecHHHHHHHHh-cCCCCCEE
Q 018571 105 DDVIMSLAD-SSWEILDISGS---DVSDFGLVKVAQMCKSLKAVDI-------------RITAAGVSEFLL-HCHSLETL 166 (354)
Q Consensus 105 D~~L~~la~-~~L~~LdLs~C---~ITD~gL~~la~~C~~L~~LdL-------------~ITd~gl~~La~-~Cp~Le~L 166 (354)
|.++..|+. |.+..+-|+|- -++|.-|..|......+-++.+ +|||.=+..+.+ .-+-.-..
T Consensus 147 ~~al~YIa~hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~t 226 (369)
T COG1509 147 DKALDYIAAHPEIREVLLSGGDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVT 226 (369)
T ss_pred HHHHHHHHcCchhheEEecCCCccccCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccCceEEEEc
Confidence 346777877 99999999984 6999999998887665555555 999877777776 34445555
Q ss_pred EecCCCCCcHHHHHHHHh
Q 018571 167 RCGGSPRSNHAARRCLGI 184 (354)
Q Consensus 167 ~L~gC~~ItD~sL~~La~ 184 (354)
.+..+..||++...++..
T Consensus 227 H~NHp~Eit~e~~~A~~~ 244 (369)
T COG1509 227 HFNHPNEITPEAREACAK 244 (369)
T ss_pred ccCChhhcCHHHHHHHHH
Confidence 678888999988777654
No 74
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=39.17 E-value=16 Score=41.05 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=9.1
Q ss_pred CCccEEEeecC
Q 018571 114 SSWEILDISGS 124 (354)
Q Consensus 114 ~~L~~LdLs~C 124 (354)
|.|..|||++|
T Consensus 571 ~~LrVLDLs~~ 581 (889)
T KOG4658|consen 571 PLLRVLDLSGN 581 (889)
T ss_pred cceEEEECCCC
Confidence 78888888887
No 75
>cd03745 SOCS_WSB2_SWIP2 SOCS (suppressors of cytokine signaling) box of WSB2/SWiP2-like proteins. This family consists of WSB-2 (SOCS-box-containing WD-40 protein) and SWiP-2 (SOCS box and WD-repeats in Protein). No functional information is available for WSB2 or SWiP-2, but limited information is available for the isoforms WSB-1 and SWiP-1. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=36.97 E-value=21 Score=24.47 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=20.9
Q ss_pred CchHHHhHHHHHHhhHHHHHHhhhHhhcCCCHHHHH
Q 018571 56 PPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKI 91 (354)
Q Consensus 56 ~~sL~~LCi~~i~~~l~~~i~~l~~~l~~LP~~ik~ 91 (354)
++||++||=..|..|+...-.+..+ ||..+++
T Consensus 3 v~SLQHLCR~~I~~~~~~~~~~~LP----LP~~Lk~ 34 (39)
T cd03745 3 LPSLRHLCRKALRHFLTTYQVLALP----IPKKMKE 34 (39)
T ss_pred cccHHHHHHHHHHHhccccccccCC----CcHHHHH
Confidence 6899999999998886432111112 6776655
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=35.12 E-value=16 Score=36.82 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=32.9
Q ss_pred CCHHHHHHHHH---hCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccc
Q 018571 126 VSDFGLVKVAQ---MCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEE 199 (354)
Q Consensus 126 ITD~gL~~la~---~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~ 199 (354)
+.|..+..+.. .|++|++|+| .|++ +.-+. .++.|+.|++.++.-.+-.++.. ++.|+.+++++..+
T Consensus 102 l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~-~l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 102 LYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LEGLS-TLTLLKELNLSGNLISDISGLES----LKSLKLLDLSYNRI 174 (414)
T ss_pred ccccchhhcccchhhhhcchheecccccccc--ccchh-hccchhhheeccCcchhccCCcc----chhhhcccCCcchh
Confidence 45555554433 3666666666 4443 22222 23336666666553222121111 55666666665555
Q ss_pred cc
Q 018571 200 LV 201 (354)
Q Consensus 200 td 201 (354)
++
T Consensus 175 ~~ 176 (414)
T KOG0531|consen 175 VD 176 (414)
T ss_pred hh
Confidence 44
No 77
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=34.89 E-value=27 Score=24.45 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=23.1
Q ss_pred CCchHHHhHHHHHHhhHHHHHHhhhHhhcCCCHHHHHHH
Q 018571 55 KPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAI 93 (354)
Q Consensus 55 ~~~sL~~LCi~~i~~~l~~~i~~l~~~l~~LP~~ik~~l 93 (354)
++++|++||-..|..++..- .+.. ..||..+++-+
T Consensus 2 ~~~sLQhLCR~tI~~~~~~~--~i~~--lpLP~~LKdyL 36 (43)
T cd03735 2 RVRPLQELCRKSIVATFGRE--NLAR--IPLNPVLKDYL 36 (43)
T ss_pred CccCHHHHHHHHHHHhcCcc--cccc--CcCCHHHHHHH
Confidence 57899999999998887531 1111 13777776644
No 78
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=34.11 E-value=27 Score=24.07 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCCCCchHHHhHHHHHHhhHHHHHHhhhHhhcCCCHHHHHHH
Q 018571 52 EKSKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAI 93 (354)
Q Consensus 52 ~~~~~~sL~~LCi~~i~~~l~~~i~~l~~~l~~LP~~ik~~l 93 (354)
+...++||++||-..|.+++.. ..+.. --+|..+++-+
T Consensus 3 r~~~~~sLqhLCR~~I~~~~~~--~~i~~--LpLP~~lk~yL 40 (43)
T smart00253 3 RPSNVPSLQHLCRFTIRRCTRT--DQIKT--LPLPPKLKDYL 40 (43)
T ss_pred CCCCCCCHHHHHHHHHHHHcCC--cCccc--CCCCHHHHHHH
Confidence 4567899999999998888763 11111 12677666543
No 79
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=29.70 E-value=38 Score=28.15 Aligned_cols=97 Identities=18% Similarity=0.298 Sum_probs=42.1
Q ss_pred HHHHHhCCCCcEEEE------eecHHHHHHHHhcCCCCCEEEecC--CCCCcHHHHHHHHhcCCCCcEeeCCCccc---c
Q 018571 132 VKVAQMCKSLKAVDI------RITAAGVSEFLLHCHSLETLRCGG--SPRSNHAARRCLGILKPKLNDVEGDSWEE---L 200 (354)
Q Consensus 132 ~~la~~C~~L~~LdL------~ITd~gl~~La~~Cp~Le~L~L~g--C~~ItD~sL~~La~~cp~L~~L~ls~~~~---t 200 (354)
..+...|++|. .++ .||+ +..+-.+|+.| ..+|++ ...+++ +..+-..|+.|.. +++.|.. +
T Consensus 4 ~~~F~~~~~l~-~~i~~~dts~vt~--m~~mF~~~~~l-~~~l~~w~~s~vt~--m~~mF~~~~~l~~-dls~w~~s~v~ 76 (120)
T PF03382_consen 4 SSMFANCTNLN-IDISNWDTSNVTD--MSYMFYGCTSL-NQDLSNWDTSNVTN--MSGMFAGCSSLNQ-DLSNWDTSNVT 76 (120)
T ss_pred HHHHHhchhcc-CCcccccccccee--HHHHhhcchhc-cCChhhhcchhhee--HHHHHhhhhhcCC-Ccccccccccc
Confidence 34445566555 444 4443 33444556665 222322 233332 2333345666666 5555432 2
Q ss_pred chhhhhccCccccc-c---ccCCCCHHHHHHHHhcCCccee
Q 018571 201 VNTDIGHGAQSLRW-F---VWPNIDKDSIEMMSTECPRIIV 237 (354)
Q Consensus 201 d~~~i~~~~~~L~~-L---~C~~ITD~~l~~L~~~Cp~L~~ 237 (354)
+..-.-.+|..|.. | +..++++ +..+-.+|+.|..
T Consensus 77 ~~~~mF~~~~~l~~~l~~wn~~~v~~--~~~mF~~~~~l~~ 115 (120)
T PF03382_consen 77 NMSNMFSGCSSLNQDLSNWNTSSVTN--MSSMFANCSNLNQ 115 (120)
T ss_pred cHHHHHhhhHHcCCchhhcccccccc--HHHHHhChHhccC
Confidence 22222334444411 1 1334433 3455556665553
No 80
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=29.64 E-value=41 Score=20.68 Aligned_cols=25 Identities=24% Similarity=0.070 Sum_probs=9.8
Q ss_pred CCEEEecCCCCCcHHHHHHHHhcCC
Q 018571 163 LETLRCGGSPRSNHAARRCLGILKP 187 (354)
Q Consensus 163 Le~L~L~gC~~ItD~sL~~La~~cp 187 (354)
|++|.|....--++.+++.|-..||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 3444444333333334444444443
No 81
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=27.36 E-value=12 Score=40.82 Aligned_cols=22 Identities=9% Similarity=0.427 Sum_probs=11.9
Q ss_pred cccccccCCCCccccccc--cccc
Q 018571 254 EAFPDITLDDPFVNDIDP--SAWA 275 (354)
Q Consensus 254 ~al~~v~~~~~~v~~~~~--~~W~ 275 (354)
..|..+.+.+-.|.++.. ..|.
T Consensus 245 ~~LrrLNLS~N~iteL~~~~~~W~ 268 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTEGEWE 268 (1255)
T ss_pred hhhheeccCcCceeeeeccHHHHh
Confidence 334555666666666444 4574
No 82
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=26.23 E-value=72 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=22.6
Q ss_pred CCchHHHhHHHHHHhhHHHHHHhhhHhhcCCCHHHHHHH
Q 018571 55 KPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAI 93 (354)
Q Consensus 55 ~~~sL~~LCi~~i~~~l~~~i~~l~~~l~~LP~~ik~~l 93 (354)
.++||++||-..|.+++.. ..+.. | .||..+++-+
T Consensus 2 ~v~sLqhLCR~~Ir~~~~~--~~i~~-L-pLP~~Lk~yL 36 (41)
T cd03740 2 QVRSLQYLCRFVIRQYTRI--DLIQK-L-PLPNKMKGYL 36 (41)
T ss_pred CcccHHHHHHHHHHHHcch--hhccc-C-CCCHHHHHHH
Confidence 4789999999999888632 12211 1 2677776644
No 83
>cd03746 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh). The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=24.31 E-value=52 Score=22.54 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.3
Q ss_pred CCchHHHhHHHHHHhhHH
Q 018571 55 KPPSLVSLCLGIVGKHLE 72 (354)
Q Consensus 55 ~~~sL~~LCi~~i~~~l~ 72 (354)
.++||++||=..|..++.
T Consensus 2 ~v~sLQhLCR~~Ir~~~~ 19 (40)
T cd03746 2 QVASLQHLCRMAIRRVMP 19 (40)
T ss_pred CCcCHHHHHHHHHHHHcc
Confidence 478999999999988864
No 84
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=23.97 E-value=1.5e+02 Score=29.85 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=33.6
Q ss_pred CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE------eec---HHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHH
Q 018571 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI------RIT---AAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLG 183 (354)
Q Consensus 114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL------~IT---d~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La 183 (354)
++++.++|... .|+..-+...+....+=+++.. +.+ ..++..+.+-|+.|.+|++.+ .-||..++.++-
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnves-nFItg~gi~a~~ 276 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVES-NFITGLGIMALL 276 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccc-cccccHHHHHHH
Confidence 55666666655 5555555554444333333322 222 233444445555555555553 335555554444
Q ss_pred h
Q 018571 184 I 184 (354)
Q Consensus 184 ~ 184 (354)
.
T Consensus 277 ~ 277 (353)
T KOG3735|consen 277 R 277 (353)
T ss_pred H
Confidence 3
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=22.01 E-value=57 Score=19.31 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=10.6
Q ss_pred CCccEEEeecCCCC
Q 018571 114 SSWEILDISGSDVS 127 (354)
Q Consensus 114 ~~L~~LdLs~C~IT 127 (354)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 46889999998544
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=22.01 E-value=57 Score=19.31 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=10.6
Q ss_pred CCccEEEeecCCCC
Q 018571 114 SSWEILDISGSDVS 127 (354)
Q Consensus 114 ~~L~~LdLs~C~IT 127 (354)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 46889999998544
No 87
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=21.82 E-value=97 Score=30.80 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=27.1
Q ss_pred CchHHHhHHHHHHhhHHHHHHhhhHhhcCCCHHHHHHHHH
Q 018571 56 PPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIAS 95 (354)
Q Consensus 56 ~~sL~~LCi~~i~~~l~~~i~~l~~~l~~LP~~ik~~ll~ 95 (354)
..+|++-|+.++.+|+.+++..- -.+.-|+.++..+|..
T Consensus 89 M~~Lve~cl~y~~~~~~~Iv~~~-~nl~Cl~~~Ll~RLa~ 127 (317)
T PF11822_consen 89 MESLVEECLQYCHDHMSEIVASP-CNLNCLNDNLLTRLAD 127 (317)
T ss_pred cHHHHHHHHHHHHHhHHHHHcCC-CCcccCCHHHHHHHHH
Confidence 67899999999999999987542 2234455555554433
No 88
>cd03733 SOCS_WSB_SWIP SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2), and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh), as well as, their isoforms WSB-2 and SWiP-2. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=21.65 E-value=63 Score=21.96 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.2
Q ss_pred CCchHHHhHHHHHHhhHH
Q 018571 55 KPPSLVSLCLGIVGKHLE 72 (354)
Q Consensus 55 ~~~sL~~LCi~~i~~~l~ 72 (354)
.++||++||=..|..++.
T Consensus 2 ~v~sLqhLCR~~Ir~~~~ 19 (39)
T cd03733 2 VVSSLQHLCRMALRRVMT 19 (39)
T ss_pred CCCCHHHHHHHHHHHHcc
Confidence 368999999999888874
No 89
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=21.25 E-value=74 Score=21.96 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.7
Q ss_pred CCchHHHhHHHHHHhhHHH
Q 018571 55 KPPSLVSLCLGIVGKHLED 73 (354)
Q Consensus 55 ~~~sL~~LCi~~i~~~l~~ 73 (354)
.++||++||=..|..++..
T Consensus 2 ~~~sLQHLCR~~I~~~~~~ 20 (41)
T cd03734 2 SARSLQHLCRLVINRLVTD 20 (41)
T ss_pred CCccHHHHHHHHHHHhcCC
Confidence 4689999999999888753
Done!