Query 018571
Match_columns 354
No_of_seqs 289 out of 1526
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:21:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e4g_A ATP synthase subunit S, 99.6 9.3E-17 3.2E-21 143.4 5.9 102 114-237 61-171 (176)
2 3ogk_B Coronatine-insensitive 99.6 1.1E-14 3.6E-19 147.9 16.7 158 102-266 364-540 (592)
3 2p1m_B Transport inhibitor res 99.6 5.9E-15 2E-19 149.6 14.4 164 103-273 325-515 (594)
4 3ogk_B Coronatine-insensitive 99.6 4.8E-15 1.6E-19 150.4 13.3 173 101-279 327-528 (592)
5 2ast_B S-phase kinase-associat 99.6 8.8E-15 3E-19 138.3 11.4 151 102-260 129-292 (336)
6 2ast_B S-phase kinase-associat 99.5 4E-14 1.4E-18 133.8 13.0 150 114-271 93-254 (336)
7 2p1m_B Transport inhibitor res 99.5 5.2E-14 1.8E-18 142.6 11.6 156 101-265 357-532 (594)
8 3e4g_A ATP synthase subunit S, 99.4 1.6E-13 5.6E-18 122.4 6.6 88 103-191 73-171 (176)
9 3un9_A NLR family member X1; l 99.3 3.5E-12 1.2E-16 125.1 11.2 150 102-258 83-258 (372)
10 2ca6_A RAN GTPase-activating p 99.2 7.3E-11 2.5E-15 114.3 14.8 134 114-254 159-318 (386)
11 3un9_A NLR family member X1; l 99.2 1.1E-11 3.7E-16 121.6 8.0 146 103-255 61-227 (372)
12 2ca6_A RAN GTPase-activating p 99.2 2.7E-11 9.3E-16 117.4 10.7 167 102-275 105-314 (386)
13 1z7x_W Ribonuclease inhibitor; 99.1 1E-10 3.4E-15 114.9 10.1 133 114-253 227-384 (461)
14 1z7x_W Ribonuclease inhibitor; 99.1 5E-10 1.7E-14 109.9 12.7 152 101-259 13-190 (461)
15 1io0_A Tropomodulin; LRR prote 99.0 5.2E-09 1.8E-13 92.4 13.1 90 114-204 36-140 (185)
16 1io0_A Tropomodulin; LRR prote 98.9 1.7E-08 5.9E-13 89.0 11.9 105 102-206 48-170 (185)
17 3goz_A Leucine-rich repeat-con 98.9 1.4E-09 4.9E-14 104.7 5.3 156 114-276 109-296 (362)
18 3goz_A Leucine-rich repeat-con 98.8 6.5E-09 2.2E-13 100.1 6.7 164 102-272 62-261 (362)
19 2ra8_A Uncharacterized protein 98.7 4.2E-09 1.4E-13 103.3 4.5 135 114-259 172-327 (362)
20 2ra8_A Uncharacterized protein 98.6 6.7E-08 2.3E-12 94.7 8.9 120 112-232 191-331 (362)
21 4ezg_A Putative uncharacterize 98.5 3.2E-08 1.1E-12 87.2 2.8 123 114-253 44-173 (197)
22 2ell_A Acidic leucine-rich nuc 98.4 1.3E-08 4.4E-13 87.1 -1.8 127 114-251 24-159 (168)
23 2je0_A Acidic leucine-rich nuc 98.4 4.9E-08 1.7E-12 81.7 -0.1 119 114-237 17-144 (149)
24 4ezg_A Putative uncharacterize 98.3 2E-07 7E-12 81.9 2.9 127 111-253 62-195 (197)
25 1pgv_A TMD-1, tropomodulin TMD 98.2 8.2E-06 2.8E-10 73.7 9.9 94 102-195 53-165 (197)
26 1pgv_A TMD-1, tropomodulin TMD 98.1 3.2E-05 1.1E-09 69.8 13.1 89 107-196 32-135 (197)
27 2je0_A Acidic leucine-rich nuc 98.1 1.6E-06 5.3E-11 72.4 3.7 97 114-216 42-146 (149)
28 4glp_A Monocyte differentiatio 98.0 3.4E-06 1.2E-10 79.1 5.1 42 159-200 167-210 (310)
29 4fmz_A Internalin; leucine ric 98.0 6.1E-06 2.1E-10 77.9 6.8 30 114-146 177-206 (347)
30 4fmz_A Internalin; leucine ric 98.0 2.8E-06 9.5E-11 80.2 4.4 57 186-252 176-234 (347)
31 1wwl_A Monocyte differentiatio 98.0 1.5E-06 5.1E-11 81.8 1.4 33 114-146 95-128 (312)
32 2ell_A Acidic leucine-rich nuc 98.0 1.6E-06 5.3E-11 73.9 1.4 97 114-216 49-153 (168)
33 4glp_A Monocyte differentiatio 98.0 1E-06 3.4E-11 82.8 0.0 129 114-251 91-236 (310)
34 1h6u_A Internalin H; cell adhe 97.9 6.3E-06 2.2E-10 77.6 4.9 119 114-252 63-186 (308)
35 1xeu_A Internalin C; cellular 97.9 3.2E-06 1.1E-10 78.1 2.7 52 114-171 41-95 (263)
36 1h6t_A Internalin B; cell adhe 97.9 5E-06 1.7E-10 77.8 3.8 78 114-201 68-148 (291)
37 1h6u_A Internalin H; cell adhe 97.9 7.7E-06 2.6E-10 77.0 4.8 117 114-250 107-228 (308)
38 1a9n_A U2A', U2A'; complex (nu 97.9 2.7E-06 9.4E-11 73.3 1.3 135 103-250 4-151 (176)
39 1wwl_A Monocyte differentiatio 97.9 7E-06 2.4E-10 77.2 4.0 132 114-252 121-266 (312)
40 1m9s_A Internalin B; cell inva 97.9 9.1E-06 3.1E-10 84.5 4.9 118 114-251 87-209 (605)
41 1m9s_A Internalin B; cell inva 97.8 4.8E-06 1.6E-10 86.6 2.1 123 111-253 61-189 (605)
42 1ozn_A Reticulon 4 receptor; N 97.8 8.8E-07 3E-11 81.8 -3.2 148 114-273 56-210 (285)
43 1ds9_A Outer arm dynein; leuci 97.8 1.3E-06 4.4E-11 76.8 -2.3 115 114-237 48-178 (198)
44 3o53_A Protein LRIM1, AGAP0063 97.8 2.4E-07 8.3E-12 87.4 -7.5 142 114-268 120-266 (317)
45 3rfs_A Internalin B, repeat mo 97.8 2.1E-06 7.2E-11 79.2 -1.0 81 114-200 63-146 (272)
46 3rfs_A Internalin B, repeat mo 97.8 3.9E-06 1.3E-10 77.3 0.9 150 86-252 14-170 (272)
47 4fcg_A Uncharacterized protein 97.8 1.5E-06 5E-11 82.9 -2.4 124 114-250 104-240 (328)
48 1h6t_A Internalin B; cell adhe 97.8 7.8E-06 2.7E-10 76.5 2.4 122 111-252 86-213 (291)
49 2z7x_B TOLL-like receptor 1, v 97.7 1.1E-05 3.7E-10 80.5 3.1 15 231-251 442-456 (520)
50 1o6v_A Internalin A; bacterial 97.7 2.3E-05 7.9E-10 77.6 5.4 80 159-252 285-366 (466)
51 3oja_A Leucine-rich immune mol 97.7 5.1E-07 1.7E-11 91.0 -6.9 138 114-264 120-262 (487)
52 3v47_A TOLL-like receptor 5B a 97.7 1.1E-06 3.9E-11 85.9 -4.4 128 114-250 30-165 (455)
53 1o6v_A Internalin A; bacterial 97.7 2.9E-05 1E-09 76.9 5.2 81 159-253 263-345 (466)
54 2z62_A TOLL-like receptor 4, v 97.7 1.2E-06 4.1E-11 80.5 -4.8 99 114-216 52-155 (276)
55 3v47_A TOLL-like receptor 5B a 97.7 1.7E-05 5.9E-10 77.4 3.1 59 114-172 103-165 (455)
56 2z63_A TOLL-like receptor 4, v 97.7 1.6E-06 5.5E-11 87.0 -4.5 56 114-171 52-110 (570)
57 2z66_A Variable lymphocyte rec 97.6 1.2E-06 4.2E-11 81.5 -5.1 129 114-251 101-235 (306)
58 1ozn_A Reticulon 4 receptor; N 97.6 3.4E-06 1.2E-10 77.8 -2.2 127 114-251 105-237 (285)
59 2z80_A TOLL-like receptor 2, v 97.6 3.3E-06 1.1E-10 80.5 -2.4 131 114-253 100-236 (353)
60 2z66_A Variable lymphocyte rec 97.6 9E-07 3.1E-11 82.4 -6.4 132 111-251 122-260 (306)
61 1xeu_A Internalin C; cellular 97.6 1.2E-05 4.1E-10 74.2 1.1 122 110-252 58-185 (263)
62 4fcg_A Uncharacterized protein 97.6 6.7E-06 2.3E-10 78.3 -0.9 143 113-273 80-238 (328)
63 3rgz_A Protein brassinosteroid 97.6 4.7E-06 1.6E-10 88.2 -2.2 59 185-250 198-258 (768)
64 2z7x_B TOLL-like receptor 1, v 97.6 2.9E-05 9.7E-10 77.5 3.3 148 114-276 302-456 (520)
65 2z81_A CD282 antigen, TOLL-lik 97.6 9E-05 3.1E-09 74.1 6.8 85 114-199 310-399 (549)
66 3o53_A Protein LRIM1, AGAP0063 97.5 4.3E-06 1.5E-10 78.8 -3.2 141 114-271 99-244 (317)
67 1xku_A Decorin; proteoglycan, 97.5 1.9E-05 6.4E-10 74.3 1.1 55 208-271 214-270 (330)
68 3vq2_A TLR4, TOLL-like recepto 97.5 2.7E-06 9.3E-11 86.4 -5.1 97 114-216 56-159 (606)
69 3rgz_A Protein brassinosteroid 97.5 4.7E-06 1.6E-10 88.2 -3.5 149 111-271 96-254 (768)
70 2z80_A TOLL-like receptor 2, v 97.4 2.5E-05 8.7E-10 74.2 1.0 145 114-270 149-307 (353)
71 3vq2_A TLR4, TOLL-like recepto 97.4 4.8E-06 1.6E-10 84.6 -4.4 130 114-252 399-534 (606)
72 4g8a_A TOLL-like receptor 4; l 97.4 1.3E-05 4.4E-10 80.8 -1.5 125 114-251 52-185 (635)
73 1a9n_A U2A', U2A'; complex (nu 97.4 3E-05 1E-09 66.7 1.0 109 114-228 42-158 (176)
74 3j0a_A TOLL-like receptor 5; m 97.4 1.2E-05 4.2E-10 85.9 -1.8 13 159-171 95-107 (844)
75 2z63_A TOLL-like receptor 4, v 97.4 3.1E-06 1E-10 85.0 -6.2 32 114-146 347-380 (570)
76 3m19_A Variable lymphocyte rec 97.4 1E-05 3.6E-10 73.5 -2.2 127 114-251 59-191 (251)
77 1ziw_A TOLL-like receptor 3; i 97.4 2.4E-05 8.1E-10 80.7 -0.1 131 111-251 45-183 (680)
78 2o6q_A Variable lymphocyte rec 97.4 7E-06 2.4E-10 75.4 -3.8 127 114-251 85-217 (270)
79 2z81_A CD282 antigen, TOLL-lik 97.4 1E-05 3.5E-10 81.0 -2.9 131 114-253 74-210 (549)
80 3m19_A Variable lymphocyte rec 97.4 6.9E-06 2.4E-10 74.7 -3.8 127 114-251 35-167 (251)
81 2xwt_C Thyrotropin receptor; s 97.3 4.8E-06 1.7E-10 74.9 -5.2 13 159-171 103-115 (239)
82 1xku_A Decorin; proteoglycan, 97.3 3.3E-05 1.1E-09 72.6 0.3 125 114-252 145-276 (330)
83 3oja_A Leucine-rich immune mol 97.3 1.1E-05 3.6E-10 81.3 -3.3 139 114-269 99-242 (487)
84 2o6s_A Variable lymphocyte rec 97.3 8.2E-06 2.8E-10 71.8 -3.7 127 114-251 28-160 (208)
85 1ds9_A Outer arm dynein; leuci 97.3 2.7E-05 9.1E-10 68.3 -0.4 103 114-222 70-186 (198)
86 3t6q_A CD180 antigen; protein- 97.3 7.5E-06 2.6E-10 83.2 -4.6 31 114-146 278-308 (606)
87 3o6n_A APL1; leucine-rich repe 97.3 1.9E-05 6.6E-10 76.0 -1.7 124 114-254 205-333 (390)
88 1ziw_A TOLL-like receptor 3; i 97.3 1.4E-05 4.8E-10 82.4 -3.0 128 114-252 25-158 (680)
89 3o6n_A APL1; leucine-rich repe 97.3 2E-05 6.9E-10 75.8 -2.0 124 114-251 69-198 (390)
90 4ecn_A Leucine-rich repeat pro 97.3 8.3E-05 2.8E-09 80.7 2.6 132 111-252 444-608 (876)
91 3e6j_A Variable lymphocyte rec 97.3 1.2E-05 4E-10 72.6 -3.5 128 114-252 40-172 (229)
92 3zyj_A Leucine-rich repeat-con 97.3 1.1E-05 3.9E-10 79.3 -3.9 129 111-252 84-220 (440)
93 3t6q_A CD180 antigen; protein- 97.3 1.1E-05 3.8E-10 81.9 -4.1 31 115-146 255-285 (606)
94 2o6q_A Variable lymphocyte rec 97.3 1.5E-05 5.1E-10 73.2 -3.0 128 114-252 61-194 (270)
95 3bz5_A Internalin-J, INLJ; leu 97.3 7.2E-05 2.5E-09 74.6 1.8 76 114-201 106-184 (457)
96 2id5_A Lingo-1, leucine rich r 97.3 3E-05 1E-09 76.6 -1.0 99 114-216 56-158 (477)
97 3oja_B Anopheles plasmodium-re 97.2 2.3E-05 7.9E-10 80.4 -2.4 84 159-252 252-337 (597)
98 2id5_A Lingo-1, leucine rich r 97.2 5.4E-05 1.8E-09 74.7 0.3 127 114-250 152-307 (477)
99 3a79_B TLR6, VLRB.59, TOLL-lik 97.2 4.8E-05 1.6E-09 77.0 -0.3 54 114-171 331-387 (562)
100 3zyj_A Leucine-rich repeat-con 97.2 1.3E-05 4.3E-10 78.9 -4.9 123 114-252 136-268 (440)
101 3oja_B Anopheles plasmodium-re 97.1 3.9E-05 1.3E-09 78.6 -1.7 122 114-252 232-358 (597)
102 3zyi_A Leucine-rich repeat-con 97.1 1.7E-05 5.8E-10 78.3 -4.4 59 186-251 217-278 (452)
103 3bz5_A Internalin-J, INLJ; leu 97.1 0.00018 6.1E-09 71.8 2.8 74 114-200 64-140 (457)
104 3a79_B TLR6, VLRB.59, TOLL-lik 97.1 0.00015 5.2E-09 73.3 2.1 127 114-252 353-486 (562)
105 1p9a_G Platelet glycoprotein I 97.1 3.6E-05 1.2E-09 72.0 -2.6 13 159-171 122-134 (290)
106 4ecn_A Leucine-rich repeat pro 97.0 0.00025 8.5E-09 76.9 3.2 128 114-252 491-632 (876)
107 2z62_A TOLL-like receptor 4, v 97.0 4.1E-05 1.4E-09 70.1 -2.5 129 114-251 100-236 (276)
108 1dce_A Protein (RAB geranylger 97.0 0.00013 4.5E-09 75.1 0.6 121 108-237 435-564 (567)
109 3zyi_A Leucine-rich repeat-con 97.0 6.8E-05 2.3E-09 73.9 -1.7 124 114-250 171-301 (452)
110 2xwt_C Thyrotropin receptor; s 96.9 2.4E-05 8.3E-10 70.3 -4.9 126 114-252 80-218 (239)
111 4eco_A Uncharacterized protein 96.9 7.8E-05 2.7E-09 77.3 -2.3 89 111-200 202-318 (636)
112 1p9a_G Platelet glycoprotein I 96.8 0.00017 6E-09 67.3 -0.5 129 110-252 50-185 (290)
113 2xot_A Amphoterin-induced prot 96.8 4.3E-05 1.5E-09 73.4 -5.0 99 114-216 64-169 (361)
114 2ft3_A Biglycan; proteoglycan, 96.7 8.3E-05 2.8E-09 70.0 -3.2 15 230-250 261-275 (332)
115 1ogq_A PGIP-2, polygalacturona 96.7 4.8E-05 1.6E-09 71.6 -5.0 83 114-199 101-186 (313)
116 2o6s_A Variable lymphocyte rec 96.7 0.00011 3.8E-09 64.4 -2.7 119 114-250 52-176 (208)
117 2v70_A SLIT-2, SLIT homolog 2 96.6 0.00011 3.8E-09 65.7 -2.9 128 114-251 32-165 (220)
118 4eco_A Uncharacterized protein 96.6 0.00022 7.6E-09 73.8 -1.1 126 114-252 249-390 (636)
119 2ft3_A Biglycan; proteoglycan, 96.6 0.00015 5E-09 68.3 -2.4 124 111-252 74-206 (332)
120 2v9t_B SLIT homolog 2 protein 96.5 0.00016 5.4E-09 64.7 -2.6 127 114-251 32-164 (220)
121 4g8a_A TOLL-like receptor 4; l 96.5 0.00025 8.6E-09 71.3 -1.6 100 111-216 72-179 (635)
122 1ogq_A PGIP-2, polygalacturona 96.4 0.00011 3.6E-09 69.2 -5.0 130 110-251 71-209 (313)
123 3j0a_A TOLL-like receptor 5; m 96.3 0.00075 2.6E-08 72.0 0.8 83 114-200 290-375 (844)
124 3g06_A SSPH2 (leucine-rich rep 96.3 0.00067 2.3E-08 70.7 0.1 76 160-252 220-297 (622)
125 3g06_A SSPH2 (leucine-rich rep 96.1 0.0066 2.3E-07 63.2 6.6 53 186-252 140-194 (622)
126 3rw6_A Nuclear RNA export fact 96.0 0.0041 1.4E-07 58.3 4.0 79 114-194 170-258 (267)
127 2xot_A Amphoterin-induced prot 96.0 0.00031 1E-08 67.4 -3.9 32 114-146 88-119 (361)
128 2v70_A SLIT-2, SLIT homolog 2 95.9 0.00051 1.7E-08 61.4 -2.5 99 114-216 57-159 (220)
129 3cvr_A Invasion plasmid antige 95.8 0.0044 1.5E-07 64.0 3.3 13 186-198 159-171 (571)
130 2o6r_A Variable lymphocyte rec 95.5 0.00088 3E-08 57.2 -2.8 82 114-199 28-112 (177)
131 2v9t_B SLIT homolog 2 protein 95.4 0.00097 3.3E-08 59.5 -3.0 99 114-216 56-158 (220)
132 1dce_A Protein (RAB geranylger 95.3 0.0044 1.5E-07 63.7 1.3 98 111-215 459-565 (567)
133 3rw6_A Nuclear RNA export fact 95.2 0.045 1.5E-06 51.2 7.8 85 152-237 161-255 (267)
134 3e6j_A Variable lymphocyte rec 95.1 0.0019 6.6E-08 57.8 -1.8 98 114-216 64-165 (229)
135 1jl5_A Outer protein YOPM; leu 95.1 0.003 1E-07 62.8 -0.7 14 186-199 194-207 (454)
136 2wfh_A SLIT homolog 2 protein 95.0 0.0021 7.2E-08 56.3 -1.7 82 114-200 31-115 (193)
137 1jl5_A Outer protein YOPM; leu 95.0 0.012 4.1E-07 58.4 3.4 14 114-127 91-104 (454)
138 3cvr_A Invasion plasmid antige 95.0 0.0055 1.9E-07 63.3 0.9 112 115-253 121-244 (571)
139 4b8c_D Glucose-repressible alc 94.9 0.003 1E-07 66.8 -1.4 101 114-222 224-330 (727)
140 4b8c_D Glucose-repressible alc 94.8 0.011 3.7E-07 62.4 2.8 103 136-252 221-329 (727)
141 3sb4_A Hypothetical leucine ri 94.8 0.01 3.4E-07 55.8 2.1 28 217-250 210-237 (329)
142 3sb4_A Hypothetical leucine ri 94.2 0.0049 1.7E-07 58.0 -1.5 115 114-237 202-325 (329)
143 2o6r_A Variable lymphocyte rec 94.0 0.003 1E-07 53.8 -3.1 83 114-200 52-137 (177)
144 1w8a_A SLIT protein; signaling 93.9 0.0021 7E-08 56.0 -4.5 84 114-200 29-115 (192)
145 1w8a_A SLIT protein; signaling 93.4 0.003 1E-07 55.0 -4.4 86 111-200 50-139 (192)
146 3g39_A Variable lymphocyte rec 92.9 0.0078 2.7E-07 51.4 -2.5 56 114-171 30-88 (170)
147 2wfh_A SLIT homolog 2 protein 92.4 0.0079 2.7E-07 52.6 -3.1 86 110-199 49-138 (193)
148 2r9u_A Variable lymphocyte rec 91.6 0.016 5.6E-07 49.7 -2.0 80 114-197 33-115 (174)
149 4ay9_X Follicle-stimulating ho 89.6 0.0027 9.1E-08 60.4 -9.8 32 114-146 30-61 (350)
150 4fdw_A Leucine rich hypothetic 85.8 0.097 3.3E-06 51.2 -1.4 53 159-216 269-329 (401)
151 4fdw_A Leucine rich hypothetic 81.8 0.076 2.6E-06 52.0 -4.1 51 185-237 269-327 (401)
152 3g39_A Variable lymphocyte rec 79.9 0.16 5.6E-06 43.0 -2.2 58 114-173 54-114 (170)
153 2r9u_A Variable lymphocyte rec 79.8 0.17 5.7E-06 43.2 -2.1 62 111-174 53-118 (174)
154 4ay9_X Follicle-stimulating ho 77.7 0.04 1.4E-06 52.1 -7.4 11 11-21 28-38 (350)
155 4gt6_A Cell surface protein; l 76.6 0.31 1.1E-05 46.7 -1.6 109 114-237 265-382 (394)
156 2ifg_A High affinity nerve gro 65.5 1.7 5.8E-05 40.3 0.8 78 117-201 11-94 (347)
157 4fs7_A Uncharacterized protein 64.4 0.51 1.7E-05 45.2 -3.1 109 114-237 276-392 (394)
158 4gt6_A Cell surface protein; l 64.3 0.83 2.8E-05 43.7 -1.6 102 136-250 262-368 (394)
159 2ifg_A High affinity nerve gro 64.0 0.57 1.9E-05 43.6 -2.8 82 114-200 31-116 (347)
160 4h09_A Hypothetical leucine ri 52.2 2.2 7.4E-05 40.2 -1.0 93 114-216 217-316 (379)
161 4h09_A Hypothetical leucine ri 42.3 1.8 6.1E-05 40.8 -3.3 11 159-169 238-248 (379)
162 4fs7_A Uncharacterized protein 41.9 9.9 0.00034 36.0 1.8 96 136-247 273-374 (394)
163 2lz0_A Uncharacterized protein 20.7 12 0.0004 29.3 -1.5 11 159-169 41-51 (100)
No 1
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.64 E-value=9.3e-17 Score=143.40 Aligned_cols=102 Identities=10% Similarity=0.110 Sum_probs=91.6
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhc---CCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLH---CHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~---Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
..|++|||++|.|||.|+..+. .|++|++|+| .|||.|+..|+.. |++|++|+|++|..|||.|+.+|+. |
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C
Confidence 5799999999999999999996 5999999999 7999999999973 8899999999999999999999985 9
Q ss_pred CCCcEeeCCCccccchhhhhccCccccccccCCCCHHH--HHHHHhcCCccee
Q 018571 187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS--IEMMSTECPRIIV 237 (354)
Q Consensus 187 p~L~~L~ls~~~~td~~~i~~~~~~L~~L~C~~ITD~~--l~~L~~~Cp~L~~ 237 (354)
|+|++|++++ |++|||.+ +..+...-|++++
T Consensus 139 ~~L~~L~L~~--------------------c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSD--------------------LPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEES--------------------CTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCC--------------------CCCCCchHHHHHHHHHHCCCcEE
Confidence 9999999975 78888876 5667778888776
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=1.1e-14 Score=147.86 Aligned_cols=158 Identities=17% Similarity=0.237 Sum_probs=111.5
Q ss_pred CCCHHHHHHhhc--CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE-------eecH----HHHHHHHhcCCCCCEEEe
Q 018571 102 LLADDVIMSLAD--SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI-------RITA----AGVSEFLLHCHSLETLRC 168 (354)
Q Consensus 102 ~ltD~~L~~la~--~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL-------~ITd----~gl~~La~~Cp~Le~L~L 168 (354)
.+++.++..+.. ++|++|+++.+++++.++..++..|++|++|+| .+|+ .|+..+..+|++|++|++
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 466666655544 666666664446666666666666666666666 3443 566666767777777777
Q ss_pred cCCC-CCcHHHHHHHHhcCCCCcEeeCCCccccchhhh--hccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCC
Q 018571 169 GGSP-RSNHAARRCLGILKPKLNDVEGDSWEELVNTDI--GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPS 242 (354)
Q Consensus 169 ~gC~-~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i--~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~ 242 (354)
++|. .++|.++..++.+||+|++|+++++.+++.++. ..+|++|+.|+ |. +|+.++..+...||+|+.
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~----- 517 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRY----- 517 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCE-----
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCe-----
Confidence 6665 377777888887788888888877777776543 46678888887 65 788888888888888888
Q ss_pred ceeecCCCCCccccccccCCCCcc
Q 018571 243 PFGFRGFEVPREAFPDITLDDPFV 266 (354)
Q Consensus 243 ~L~l~gC~~s~~al~~v~~~~~~v 266 (354)
|++.+|.++..++..+....|.+
T Consensus 518 -L~ls~n~it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 518 -LWVQGYRASMTGQDLMQMARPYW 540 (592)
T ss_dssp -EEEESCBCCTTCTTGGGGCCTTE
T ss_pred -eECcCCcCCHHHHHHHHHhCCCc
Confidence 88888888887777766665543
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=5.9e-15 Score=149.59 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=129.5
Q ss_pred CCHHHHHHhhc--CCccEEEee--------cC-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEe
Q 018571 103 LADDVIMSLAD--SSWEILDIS--------GS-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRC 168 (354)
Q Consensus 103 ltD~~L~~la~--~~L~~LdLs--------~C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L 168 (354)
++|.++..++. ++|++|+|+ +| .+++.|+..++..|++|+.|++ .+++.++..++.+|++|++|++
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEe
Confidence 56666766665 788888883 45 7889999888888999999977 8889999999888999999999
Q ss_pred c-----CCCCCc----HHHHHHHHhcCCCCcEeeCCCccccchhh--hhccCccccccc--cCCCCHHHHHHHHhcCCcc
Q 018571 169 G-----GSPRSN----HAARRCLGILKPKLNDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRI 235 (354)
Q Consensus 169 ~-----gC~~It----D~sL~~La~~cp~L~~L~ls~~~~td~~~--i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L 235 (354)
+ +|..++ |.++..+..+|++|+.|++++ .++|.+. ++..+++|+.|+ +..+||.++..++.+||+|
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 8 788888 888888888899999999877 6666654 345578888887 5568888888888888888
Q ss_pred eecCCCCceeecCCCCCccccccccCCCCccccccccc
Q 018571 236 IVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSA 273 (354)
Q Consensus 236 ~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~~~~~~ 273 (354)
+. |++.+|++++.+++.+....+.++.++...
T Consensus 484 ~~------L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 484 RK------LEIRDCPFGDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp CE------EEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred CE------EECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence 88 888888887776666665566666655543
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=4.8e-15 Score=150.41 Aligned_cols=173 Identities=20% Similarity=0.212 Sum_probs=148.5
Q ss_pred CCCCHHHHHHhhc--CCccEEEeec----------C-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCC
Q 018571 101 KLLADDVIMSLAD--SSWEILDISG----------S-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLE 164 (354)
Q Consensus 101 ~~ltD~~L~~la~--~~L~~LdLs~----------C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le 164 (354)
..++|.++..++. ++|++|+|++ | .+++.|+..++..|++|++|++ .+++.++..++.+|++|+
T Consensus 327 ~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~ 406 (592)
T 3ogk_B 327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC 406 (592)
T ss_dssp GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCC
T ss_pred CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCc
Confidence 3467888888765 8999999995 8 9999999999999999999999 999999999999999999
Q ss_pred EEEecC---CCCCcH----HHHHHHHhcCCCCcEeeCCCcc--ccchhh--hhccCccccccc--cCCCCHHHHHHHHhc
Q 018571 165 TLRCGG---SPRSNH----AARRCLGILKPKLNDVEGDSWE--ELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTE 231 (354)
Q Consensus 165 ~L~L~g---C~~ItD----~sL~~La~~cp~L~~L~ls~~~--~td~~~--i~~~~~~L~~L~--C~~ITD~~l~~L~~~ 231 (354)
+|++++ |..+++ .++..+..+|++|++|+++.|. +++.+. ++..+++|++|+ +.++||.++..+..+
T Consensus 407 ~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 486 (592)
T 3ogk_B 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486 (592)
T ss_dssp EEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred EEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence 999984 678886 6888899999999999997654 566654 467789999998 667999999999999
Q ss_pred CCcceecCCCCceeecCCCCCccccccccCCCCccccccccccccccc
Q 018571 232 CPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRF 279 (354)
Q Consensus 232 Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~~~~~~W~v~~~ 279 (354)
|++|+. |++.+|++++.+++.+....+.++.++.....++..
T Consensus 487 ~~~L~~------L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 487 CPNLQK------LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CTTCCE------EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CcccCe------eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999999 999999998888888777778888877766555443
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=8.8e-15 Score=138.35 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=130.2
Q ss_pred CCCHHHHHHhhc-CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHHHHHhcCC-CCCEEEecCCC-C
Q 018571 102 LLADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVSEFLLHCH-SLETLRCGGSP-R 173 (354)
Q Consensus 102 ~ltD~~L~~la~-~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~~La~~Cp-~Le~L~L~gC~-~ 173 (354)
.+++.....+.. ++|++|+|++| .+++.++..+...|++|++|+| .+++.++..+..+|+ +|++|++++|. .
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 478888888887 99999999999 9999999998888999999999 789999999899999 99999999998 7
Q ss_pred CcHHHHHHHHhcCCCCcEeeCCCcc-ccchhhh-hccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecC
Q 018571 174 SNHAARRCLGILKPKLNDVEGDSWE-ELVNTDI-GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRG 248 (354)
Q Consensus 174 ItD~sL~~La~~cp~L~~L~ls~~~-~td~~~i-~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~g 248 (354)
++|.++..+..+||+|++|+++++. +++.+.. -..+++|+.|+ |..+++.++..+. .||+|+. |++.|
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~------L~l~~ 281 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKT------LQVFG 281 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCE------EECTT
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCE------EeccC
Confidence 9999998888889999999999998 5655442 24568899987 8889999886664 5999999 99999
Q ss_pred CCCCcccccccc
Q 018571 249 FEVPREAFPDIT 260 (354)
Q Consensus 249 C~~s~~al~~v~ 260 (354)
| ++++++..+.
T Consensus 282 ~-i~~~~~~~l~ 292 (336)
T 2ast_B 282 I-VPDGTLQLLK 292 (336)
T ss_dssp S-SCTTCHHHHH
T ss_pred c-cCHHHHHHHH
Confidence 9 7776655443
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=4e-14 Score=133.83 Aligned_cols=150 Identities=13% Similarity=0.209 Sum_probs=102.9
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++.++..+...|++|++|+| .+++.+...++. |++|++|++++|..+++.++..+..+|++|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 667777777777777777777777777777777 677777766664 7777777777777777777777666777777
Q ss_pred EeeCCCc-cccchhh--hhccCc-cccccc---cC-CCCHHHHHHHHhcCCcceecCCCCceeecCCC-CCccccccccC
Q 018571 191 DVEGDSW-EELVNTD--IGHGAQ-SLRWFV---WP-NIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE-VPREAFPDITL 261 (354)
Q Consensus 191 ~L~ls~~-~~td~~~--i~~~~~-~L~~L~---C~-~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~-~s~~al~~v~~ 261 (354)
+|+++++ .+++.++ ....++ +|+.|+ |. .+||.++..+...||+|+. |++.+|. +++..++.+ .
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~------L~l~~~~~l~~~~~~~l-~ 244 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH------LDLSDSVMLKNDCFQEF-F 244 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE------EECTTCTTCCGGGGGGG-G
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE------EeCCCCCcCCHHHHHHH-h
Confidence 7777777 6665443 234556 777776 44 6777777777777777777 7777777 565555544 2
Q ss_pred CCCccccccc
Q 018571 262 DDPFVNDIDP 271 (354)
Q Consensus 262 ~~~~v~~~~~ 271 (354)
..+.++.++.
T Consensus 245 ~l~~L~~L~l 254 (336)
T 2ast_B 245 QLNYLQHLSL 254 (336)
T ss_dssp GCTTCCEEEC
T ss_pred CCCCCCEeeC
Confidence 3355555544
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=5.2e-14 Score=142.60 Aligned_cols=156 Identities=14% Similarity=0.138 Sum_probs=123.3
Q ss_pred CCCCHHHHHHhhc--CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEEe---------ec----HHHHHHHHhcCCCCCE
Q 018571 101 KLLADDVIMSLAD--SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIR---------IT----AAGVSEFLLHCHSLET 165 (354)
Q Consensus 101 ~~ltD~~L~~la~--~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL~---------IT----d~gl~~La~~Cp~Le~ 165 (354)
..+++.++..+.. ++|++|+++++++++.++..++..|++|+.|+|. +| |.|+..++.+|++|++
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence 3578888887775 8889986655588998888888888999988883 34 7888888888999999
Q ss_pred EEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhh--hccCccccccc---cCCCCHHHHHHHHhcCCcceecCC
Q 018571 166 LRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDI--GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPK 240 (354)
Q Consensus 166 L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i--~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~ 240 (354)
|++++ .++|.++..++.++++|+.|+++++.++|.++. ..++++|+.|+ |. +|+.++..++..||+|+.
T Consensus 437 L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~--- 510 (594)
T 2p1m_B 437 LSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRS--- 510 (594)
T ss_dssp EECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSE---
T ss_pred EeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCE---
Confidence 99976 788888888888888899998888888777653 46688888887 54 588888888888889998
Q ss_pred CCceeecCCCCCccccccccCCCCc
Q 018571 241 PSPFGFRGFEVPREAFPDITLDDPF 265 (354)
Q Consensus 241 ~~~L~l~gC~~s~~al~~v~~~~~~ 265 (354)
|++.+|+++.+++..+....|.
T Consensus 511 ---L~l~~~~~~~~~~~~l~~~lp~ 532 (594)
T 2p1m_B 511 ---LWMSSCSVSFGACKLLGQKMPK 532 (594)
T ss_dssp ---EEEESSCCBHHHHHHHHHHCTT
T ss_pred ---EeeeCCCCCHHHHHHHHHhCCC
Confidence 8899998776665554333333
No 8
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.41 E-value=1.6e-13 Score=122.36 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=80.8
Q ss_pred CCHHHHHHhhc-CCccEEEeecC-CCCHHHHHHHHH---hCCCCcEEEE----eecHHHHHHHHhcCCCCCEEEecCCCC
Q 018571 103 LADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQ---MCKSLKAVDI----RITAAGVSEFLLHCHSLETLRCGGSPR 173 (354)
Q Consensus 103 ltD~~L~~la~-~~L~~LdLs~C-~ITD~gL~~la~---~C~~L~~LdL----~ITd~gl~~La~~Cp~Le~L~L~gC~~ 173 (354)
|||.++..+.. ++|++|+|++| .|||.|+..|+. .|++|++|+| +|||.|+..|+ +|++|++|+|++|+.
T Consensus 73 Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 73 IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPG 151 (176)
T ss_dssp CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTT
T ss_pred ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCC
Confidence 99999999987 99999999999 899999999997 4789999999 79999999998 699999999999999
Q ss_pred CcHHH--HHHHHhcCCCCcE
Q 018571 174 SNHAA--RRCLGILKPKLND 191 (354)
Q Consensus 174 ItD~s--L~~La~~cp~L~~ 191 (354)
|||.+ ...+-...|+++.
T Consensus 152 Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 152 VKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CCCHHHHHHHHHHHCTTCEE
T ss_pred CCchHHHHHHHHHHCCCcEE
Confidence 99976 4567788999875
No 9
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=3.5e-12 Score=125.09 Aligned_cols=150 Identities=9% Similarity=0.021 Sum_probs=124.3
Q ss_pred CCCHHHHHHhhc------CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHh----cCCCCCEEEe
Q 018571 102 LLADDVIMSLAD------SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLL----HCHSLETLRC 168 (354)
Q Consensus 102 ~ltD~~L~~la~------~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~----~Cp~Le~L~L 168 (354)
.+++.....++. ++|++|+|++|.++|.|+..++..+++|+.|+| .|++.|+..|+. .+++|++|+|
T Consensus 83 ~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~L 162 (372)
T 3un9_A 83 RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162 (372)
T ss_dssp CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEEC
T ss_pred CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeC
Confidence 477766555432 589999999999999999999998999999999 999999988875 4788999999
Q ss_pred cCCCCCcHHHHHHHH---hcCCCCcEeeCCCccccchhhh-----hccCccccccc--cCCCCHHHHHHHHh---cCCcc
Q 018571 169 GGSPRSNHAARRCLG---ILKPKLNDVEGDSWEELVNTDI-----GHGAQSLRWFV--WPNIDKDSIEMMST---ECPRI 235 (354)
Q Consensus 169 ~gC~~ItD~sL~~La---~~cp~L~~L~ls~~~~td~~~i-----~~~~~~L~~L~--C~~ITD~~l~~L~~---~Cp~L 235 (354)
++| .+++.+...++ ..++.|++|+++++.+.|.|+. -..+++|+.|+ ..+|||.++..++. .++.|
T Consensus 163 s~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L 241 (372)
T 3un9_A 163 SNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL 241 (372)
T ss_dssp CSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSC
T ss_pred CCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCC
Confidence 998 58998888876 4688999999999999988753 24456899988 66899999887754 68999
Q ss_pred eecCCCCceeecCCCCCcccccc
Q 018571 236 IVNPKPSPFGFRGFEVPREAFPD 258 (354)
Q Consensus 236 ~~~p~~~~L~l~gC~~s~~al~~ 258 (354)
+. |++.+|++++.+...
T Consensus 242 ~~------L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 242 EL------LHLYFNELSSEGRQV 258 (372)
T ss_dssp CE------EECTTSSCCHHHHHH
T ss_pred CE------EeccCCCCCHHHHHH
Confidence 99 999999987766543
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.25 E-value=7.3e-11 Score=114.34 Aligned_cols=134 Identities=15% Similarity=0.237 Sum_probs=83.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHH---hCCCCcEEEE---eecHHHHHHHHh----cCCCCCEEEecCCCCCcHHHHHHHH
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDI---RITAAGVSEFLL----HCHSLETLRCGGSPRSNHAARRCLG 183 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~---~C~~L~~LdL---~ITd~gl~~La~----~Cp~Le~L~L~gC~~ItD~sL~~La 183 (354)
++|++|+|++|.+++.++..++. .|++|+.|+| .|++.|+..++. +|++|++|+|++|. +++.+...+.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH
Confidence 57777777777777666664333 5677777777 677777666555 66777777777664 6665554443
Q ss_pred ---hcCCCCcEeeCCCccccchhhh--h-----ccCccccccc--cCCCCHHHHHHHH----hcCCcceecCCCCceeec
Q 018571 184 ---ILKPKLNDVEGDSWEELVNTDI--G-----HGAQSLRWFV--WPNIDKDSIEMMS----TECPRIIVNPKPSPFGFR 247 (354)
Q Consensus 184 ---~~cp~L~~L~ls~~~~td~~~i--~-----~~~~~L~~L~--C~~ITD~~l~~L~----~~Cp~L~~~p~~~~L~l~ 247 (354)
..+++|++|+++++.+++.|.. . ..+++|+.|+ ...+++.|+..+. .+||+|+. |++.
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~------L~l~ 311 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF------LELN 311 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE------EECT
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE------EEcc
Confidence 3567777777777766665432 1 1256677666 4557775544443 44677777 7777
Q ss_pred CCCCCcc
Q 018571 248 GFEVPRE 254 (354)
Q Consensus 248 gC~~s~~ 254 (354)
+|+++..
T Consensus 312 ~N~l~~~ 318 (386)
T 2ca6_A 312 GNRFSEE 318 (386)
T ss_dssp TSBSCTT
T ss_pred CCcCCcc
Confidence 7775433
No 11
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=121.64 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=122.8
Q ss_pred CCHHHHHHhhcCCccEEEeecCCCCHHHHHHHHHh----CCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCc
Q 018571 103 LADDVIMSLADSSWEILDISGSDVSDFGLVKVAQM----CKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSN 175 (354)
Q Consensus 103 ltD~~L~~la~~~L~~LdLs~C~ITD~gL~~la~~----C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~It 175 (354)
+.|..+..-..++|++|+|++|.+++.+...++.. +++|++|+| .|++.|+..++..+++|++|+|++| .++
T Consensus 61 ~~~~~l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~ 139 (372)
T 3un9_A 61 FQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLG 139 (372)
T ss_dssp HHTHHHHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCC
T ss_pred hcCHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCC
Confidence 34555555555899999999999999999888765 479999999 9999999999999999999999998 789
Q ss_pred HHHHHHHHh----cCCCCcEeeCCCccccchhhh--h---ccCccccccc--cCCCCHHHHHHHH---hcCCcceecCCC
Q 018571 176 HAARRCLGI----LKPKLNDVEGDSWEELVNTDI--G---HGAQSLRWFV--WPNIDKDSIEMMS---TECPRIIVNPKP 241 (354)
Q Consensus 176 D~sL~~La~----~cp~L~~L~ls~~~~td~~~i--~---~~~~~L~~L~--C~~ITD~~l~~L~---~~Cp~L~~~p~~ 241 (354)
|.+...++. .++.|++|+++++.+++.|.. + ..+++|+.|+ ...|+|.|+..+. ..++.|+.
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~---- 215 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE---- 215 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE----
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe----
Confidence 999888764 468999999999999887753 2 4578899998 6679999987775 56789999
Q ss_pred CceeecCCCCCccc
Q 018571 242 SPFGFRGFEVPREA 255 (354)
Q Consensus 242 ~~L~l~gC~~s~~a 255 (354)
|++.+|.+++.+
T Consensus 216 --L~Ls~N~i~~~g 227 (372)
T 3un9_A 216 --LNVAYNGAGDTA 227 (372)
T ss_dssp --EECCSSCCCHHH
T ss_pred --EECCCCCCCHHH
Confidence 999999987754
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=2.7e-11 Score=117.36 Aligned_cols=167 Identities=10% Similarity=0.005 Sum_probs=127.7
Q ss_pred CCCHHHHH----Hhhc-CCccEEEeecCCCCHHHHHHHHHhC------------CCCcEEEE---eecHHHHHHHHh---
Q 018571 102 LLADDVIM----SLAD-SSWEILDISGSDVSDFGLVKVAQMC------------KSLKAVDI---RITAAGVSEFLL--- 158 (354)
Q Consensus 102 ~ltD~~L~----~la~-~~L~~LdLs~C~ITD~gL~~la~~C------------~~L~~LdL---~ITd~gl~~La~--- 158 (354)
.+++.++. .+.. ++|++|+|++|.+++.+...++..+ ++|++|+| .+++.++..++.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 46664433 3444 9999999999999999887776543 99999999 888888886554
Q ss_pred cCCCCCEEEecCCCCCcHHHHHHHHh----cCCCCcEeeCCCccccchhhh-----hccCccccccc--cCCCCHHHHHH
Q 018571 159 HCHSLETLRCGGSPRSNHAARRCLGI----LKPKLNDVEGDSWEELVNTDI-----GHGAQSLRWFV--WPNIDKDSIEM 227 (354)
Q Consensus 159 ~Cp~Le~L~L~gC~~ItD~sL~~La~----~cp~L~~L~ls~~~~td~~~i-----~~~~~~L~~L~--C~~ITD~~l~~ 227 (354)
+|++|++|++++| .+++.++..+.. ++++|++|+++++.+++.|.. -..+++|+.|+ ...|++.+...
T Consensus 185 ~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 185 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 8999999999998 688888777655 799999999999998876542 25678899988 55799998887
Q ss_pred HHhc-----CCcceecCCCCceeecCCCCCccc---ccccc-CCCCccccccccccc
Q 018571 228 MSTE-----CPRIIVNPKPSPFGFRGFEVPREA---FPDIT-LDDPFVNDIDPSAWA 275 (354)
Q Consensus 228 L~~~-----Cp~L~~~p~~~~L~l~gC~~s~~a---l~~v~-~~~~~v~~~~~~~W~ 275 (354)
+... +++|+. |++.+|.++..+ ++... ...+.++.++...-.
T Consensus 264 l~~~l~~~~~~~L~~------L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 264 VVDAFSKLENIGLQT------LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHTCSSCCCCE------EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHhhccCCCeEE------EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 7653 899999 999999987753 33222 334666666654333
No 13
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.14 E-value=1e-10 Score=114.94 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=63.2
Q ss_pred CCccEEEeecCCCCHHHHHHHHH----hCCCCcEEEE---eecHHHHHHHHh---cCCCCCEEEecCCCCCcHHHHHHHH
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQ----MCKSLKAVDI---RITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCLG 183 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~----~C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L~L~gC~~ItD~sL~~La 183 (354)
++|++|+|++|.+++.|+..++. .+++|++|+| .+++.|+..++. +|++|++|++++| .+++.+...++
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~ 305 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLC 305 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHH
Confidence 44444444444444444444332 2444444444 444444333332 2455555555544 34444444443
Q ss_pred hc----CCCCcEeeCCCccccchhh--h---hccCccccccc--cCCCCHHHHHHHHhc----CCcceecCCCCceeecC
Q 018571 184 IL----KPKLNDVEGDSWEELVNTD--I---GHGAQSLRWFV--WPNIDKDSIEMMSTE----CPRIIVNPKPSPFGFRG 248 (354)
Q Consensus 184 ~~----cp~L~~L~ls~~~~td~~~--i---~~~~~~L~~L~--C~~ITD~~l~~L~~~----Cp~L~~~p~~~~L~l~g 248 (354)
.. .++|++|+++++.+++.+. + -..+++|+.|+ ...+++.++..+... ++.|+. |++.+
T Consensus 306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~------L~L~~ 379 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV------LWLAD 379 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE------EECTT
T ss_pred HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE------EECCC
Confidence 32 2345555555444444332 1 12345666665 335666666555542 556666 66666
Q ss_pred CCCCc
Q 018571 249 FEVPR 253 (354)
Q Consensus 249 C~~s~ 253 (354)
|.+++
T Consensus 380 n~i~~ 384 (461)
T 1z7x_W 380 CDVSD 384 (461)
T ss_dssp SCCCH
T ss_pred CCCCh
Confidence 66654
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.10 E-value=5e-10 Score=109.90 Aligned_cols=152 Identities=11% Similarity=0.083 Sum_probs=117.7
Q ss_pred CCCCHHHHHHhhc--CCccEEEeecCCCCHHHHHHHH---HhCCCCcEEEE---eecHHHHHHHHhcCC----CCCEEEe
Q 018571 101 KLLADDVIMSLAD--SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDI---RITAAGVSEFLLHCH----SLETLRC 168 (354)
Q Consensus 101 ~~ltD~~L~~la~--~~L~~LdLs~C~ITD~gL~~la---~~C~~L~~LdL---~ITd~gl~~La~~Cp----~Le~L~L 168 (354)
..+++..+..+.. ++|++|+|++|++++.++..+. ..|++|++|+| .+++.++..++..++ +|++|++
T Consensus 13 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 92 (461)
T 1z7x_W 13 EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 92 (461)
T ss_dssp CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEEC
T ss_pred cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEc
Confidence 3478877766444 9999999999999998766554 44899999999 899999999998888 7999999
Q ss_pred cCCCCCcHHHHHHHH---hcCCCCcEeeCCCccccchhhh--hc----cCccccccc--cCCCCHHHHHHH---HhcCCc
Q 018571 169 GGSPRSNHAARRCLG---ILKPKLNDVEGDSWEELVNTDI--GH----GAQSLRWFV--WPNIDKDSIEMM---STECPR 234 (354)
Q Consensus 169 ~gC~~ItD~sL~~La---~~cp~L~~L~ls~~~~td~~~i--~~----~~~~L~~L~--C~~ITD~~l~~L---~~~Cp~ 234 (354)
++|. +++.++..+. ..|++|++|+++++.+.+.+.. +. ..++|+.|+ ..++++.+...+ ...|++
T Consensus 93 ~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 171 (461)
T 1z7x_W 93 QNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171 (461)
T ss_dssp TTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTT
T ss_pred cCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCC
Confidence 9985 7776544443 5689999999999988876542 22 245788887 457888765444 456999
Q ss_pred ceecCCCCceeecCCCCCccccccc
Q 018571 235 IIVNPKPSPFGFRGFEVPREAFPDI 259 (354)
Q Consensus 235 L~~~p~~~~L~l~gC~~s~~al~~v 259 (354)
|+. +++.+|.+++.....+
T Consensus 172 L~~------L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 172 FKE------LTVSNNDINEAGVRVL 190 (461)
T ss_dssp CCE------EECCSSBCHHHHHHHH
T ss_pred CCE------EECcCCCcchHHHHHH
Confidence 999 9999999776655444
No 15
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.98 E-value=5.2e-09 Score=92.40 Aligned_cols=90 Identities=13% Similarity=0.038 Sum_probs=68.5
Q ss_pred CCccEEEeecC-CCCHHHHHHHHHh---CCCCcEEEE---eecHHHHHHHHh---cCCCCCEEEecCCCCCcHHHHHHHH
Q 018571 114 SSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDI---RITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCLG 183 (354)
Q Consensus 114 ~~L~~LdLs~C-~ITD~gL~~la~~---C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L~L~gC~~ItD~sL~~La 183 (354)
++|++|+|++| .|+|.|+..++.. +++|++|+| .|+|.|+..|+. .++.|++|+|++| .++|.+..+|+
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHH
Confidence 78888888888 8888888877654 678888888 888888777764 4678888888876 58888877776
Q ss_pred h---cCCCCcEeeC--CCccccchhh
Q 018571 184 I---LKPKLNDVEG--DSWEELVNTD 204 (354)
Q Consensus 184 ~---~cp~L~~L~l--s~~~~td~~~ 204 (354)
. .++.|++|++ ++..+.+.|.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHH
Confidence 4 3567888888 6555555553
No 16
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.86 E-value=1.7e-08 Score=89.02 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=87.4
Q ss_pred CCCHHHHHHhhc-----CCccEEEeecCCCCHHHHHHHHHh---CCCCcEEEE---eecHHHHHHHHh---cCCCCCEEE
Q 018571 102 LLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQM---CKSLKAVDI---RITAAGVSEFLL---HCHSLETLR 167 (354)
Q Consensus 102 ~ltD~~L~~la~-----~~L~~LdLs~C~ITD~gL~~la~~---C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L~ 167 (354)
.++|+++..++. ++|++|+|++|.|+|.|...++.. +++|++|+| .|++.|+.+|+. .++.|++|+
T Consensus 48 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~ 127 (185)
T 1io0_A 48 NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELR 127 (185)
T ss_dssp TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEE
T ss_pred CCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEE
Confidence 689988877764 799999999999999998877653 689999999 999999988885 477899999
Q ss_pred ec-CCCCCcHHHHHHHHh---cCCCCcEeeCCCccccchhhhh
Q 018571 168 CG-GSPRSNHAARRCLGI---LKPKLNDVEGDSWEELVNTDIG 206 (354)
Q Consensus 168 L~-gC~~ItD~sL~~La~---~cp~L~~L~ls~~~~td~~~i~ 206 (354)
|+ .+..++|.+...|+. .++.|++|+++++.+.+.|.++
T Consensus 128 L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~i~ 170 (185)
T 1io0_A 128 IDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRAS 170 (185)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHHHH
Confidence 94 245799998777664 4689999999988887777543
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.86 E-value=1.4e-09 Score=104.74 Aligned_cols=156 Identities=8% Similarity=0.042 Sum_probs=101.7
Q ss_pred CCccEEEeecCCCCHHHHHHHHHh----CCCCcEEEE---eecHHHHHHHHh---cCC-CCCEEEecCCCCCcHHHHHHH
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQM----CKSLKAVDI---RITAAGVSEFLL---HCH-SLETLRCGGSPRSNHAARRCL 182 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~----C~~L~~LdL---~ITd~gl~~La~---~Cp-~Le~L~L~gC~~ItD~sL~~L 182 (354)
++|++|+|++|.+++.+...++.. |++|++|+| .+++.|+..++. .++ +|++|+|++| .+++.+...+
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l 187 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAEL 187 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHH
Confidence 588888888888888777766654 578888888 777766666543 344 8888888887 3554444333
Q ss_pred H---hcC-CCCcEeeCCCccccchhhh------hccCccccccc--cCCCCHHHH---HHHHhcCCcceecCCCCceeec
Q 018571 183 G---ILK-PKLNDVEGDSWEELVNTDI------GHGAQSLRWFV--WPNIDKDSI---EMMSTECPRIIVNPKPSPFGFR 247 (354)
Q Consensus 183 a---~~c-p~L~~L~ls~~~~td~~~i------~~~~~~L~~L~--C~~ITD~~l---~~L~~~Cp~L~~~p~~~~L~l~ 247 (354)
+ ..+ ++|++|+++++.+.+.|.. ....++|+.|+ ...+++.++ ..+...+++|+. +++.
T Consensus 188 ~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~------L~L~ 261 (362)
T 3goz_A 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT------VYLD 261 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE------EEEE
T ss_pred HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE------EEec
Confidence 3 234 4888888888887775532 23346788887 556777544 444466788888 8888
Q ss_pred CCC---CCccccccccC---CCCcccccccccccc
Q 018571 248 GFE---VPREAFPDITL---DDPFVNDIDPSAWAV 276 (354)
Q Consensus 248 gC~---~s~~al~~v~~---~~~~v~~~~~~~W~v 276 (354)
+|. ++.+.+..+.. ..+.++.++...+.+
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 887 55554443332 334445555544443
No 18
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.77 E-value=6.5e-09 Score=100.12 Aligned_cols=164 Identities=11% Similarity=0.020 Sum_probs=114.0
Q ss_pred CCCHHHHHHhhc------CCccEEEeecCCCCHHHHHHHHH---hC-CCCcEEEE---eecHHHHHHHHhc----CCCCC
Q 018571 102 LLADDVIMSLAD------SSWEILDISGSDVSDFGLVKVAQ---MC-KSLKAVDI---RITAAGVSEFLLH----CHSLE 164 (354)
Q Consensus 102 ~ltD~~L~~la~------~~L~~LdLs~C~ITD~gL~~la~---~C-~~L~~LdL---~ITd~gl~~La~~----Cp~Le 164 (354)
.+++.....+.. ++|++|+|++|.+++.+...++. .+ ++|+.|+| .+++.+...++.. |++|+
T Consensus 62 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 62 SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 355554444443 78999999999888766665544 34 89999999 7887777766654 67999
Q ss_pred EEEecCCCCCcHHHHHHHHh---cCC-CCcEeeCCCccccchhhh--h---ccC-ccccccc--cCCCCHHHHHHHH---
Q 018571 165 TLRCGGSPRSNHAARRCLGI---LKP-KLNDVEGDSWEELVNTDI--G---HGA-QSLRWFV--WPNIDKDSIEMMS--- 229 (354)
Q Consensus 165 ~L~L~gC~~ItD~sL~~La~---~cp-~L~~L~ls~~~~td~~~i--~---~~~-~~L~~L~--C~~ITD~~l~~L~--- 229 (354)
+|++++| .+++.+...++. .++ .|++|+++++.+++.+.. + ..+ ++|+.|+ ...|++.++..+.
T Consensus 142 ~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 142 SLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp EEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 9999987 567655555432 244 999999999988776532 1 233 5899988 5568886655443
Q ss_pred -hcCCcceecCCCCceeecCCCCCcccc---ccccCCCCcccccccc
Q 018571 230 -TECPRIIVNPKPSPFGFRGFEVPREAF---PDITLDDPFVNDIDPS 272 (354)
Q Consensus 230 -~~Cp~L~~~p~~~~L~l~gC~~s~~al---~~v~~~~~~v~~~~~~ 272 (354)
..+++|+. |++.+|.++.... ..+....+.++.++..
T Consensus 221 ~~~~~~L~~------L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 221 SSIPNHVVS------LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp HHSCTTCCE------EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hcCCCCceE------EECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 34679999 9999999777544 4444445556655443
No 19
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=4.2e-09 Score=103.25 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=98.2
Q ss_pred CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHh-cCCCCCEEEecCCCC--CcHHHHHHHH---
Q 018571 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLL-HCHSLETLRCGGSPR--SNHAARRCLG--- 183 (354)
Q Consensus 114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~-~Cp~Le~L~L~gC~~--ItD~sL~~La--- 183 (354)
|+|++|+|++| .++-.. + .+++|++|+| .+++.++..|+. .+|+|++|+|+.+.. ..|.++..|+
T Consensus 172 P~L~~L~L~g~~~l~l~~---~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK---K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TTCCEEEEECCBTCBCCS---C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCcEEEEeCCCCceecc---c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 89999999988 444222 1 2789999999 888999988885 589999999864321 1222222221
Q ss_pred --hcCCCCcEeeCCCccccchhh--hh--ccCccccccc--cCCCCHHHHHHHH---hcCCcceecCCCCceeecCCCCC
Q 018571 184 --ILKPKLNDVEGDSWEELVNTD--IG--HGAQSLRWFV--WPNIDKDSIEMMS---TECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 184 --~~cp~L~~L~ls~~~~td~~~--i~--~~~~~L~~L~--C~~ITD~~l~~L~---~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
..+|+|++|++..+.+.|.+. ++ ..+++|+.|+ +..++|.|...+. .++++|+. |++.+|.++
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~------L~L~~n~i~ 320 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF------INMKYNYLS 320 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSE------EECCSBBCC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceE------EECCCCcCC
Confidence 358999999998888887653 22 3567888888 7789999988886 45889999 999999988
Q ss_pred ccccccc
Q 018571 253 REAFPDI 259 (354)
Q Consensus 253 ~~al~~v 259 (354)
++.+..+
T Consensus 321 d~~~~~l 327 (362)
T 2ra8_A 321 DEMKKEL 327 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765443
No 20
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=6.7e-08 Score=94.65 Aligned_cols=120 Identities=8% Similarity=0.075 Sum_probs=94.2
Q ss_pred hcCCccEEEeecCCCCHHHHHHHHH-hCCCCcEEEEee------cHHHHHHHH-----hcCCCCCEEEecCCCCCcHHHH
Q 018571 112 ADSSWEILDISGSDVSDFGLVKVAQ-MCKSLKAVDIRI------TAAGVSEFL-----LHCHSLETLRCGGSPRSNHAAR 179 (354)
Q Consensus 112 a~~~L~~LdLs~C~ITD~gL~~la~-~C~~L~~LdL~I------Td~gl~~La-----~~Cp~Le~L~L~gC~~ItD~sL 179 (354)
..++|++|+|..|.+++.++..++. .+|+|++|+|.+ .+.++..|+ ..||+|++|+|.+|. ++|.+.
T Consensus 191 ~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~ 269 (362)
T 2ra8_A 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVV 269 (362)
T ss_dssp BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHH
T ss_pred cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHH
Confidence 3589999999999999999999985 599999999943 232332222 358999999999874 677666
Q ss_pred HHHHh--cCCCCcEeeCCCccccchhh--hh---ccCccccccc--cCCCCHHHHHHHHhcC
Q 018571 180 RCLGI--LKPKLNDVEGDSWEELVNTD--IG---HGAQSLRWFV--WPNIDKDSIEMMSTEC 232 (354)
Q Consensus 180 ~~La~--~cp~L~~L~ls~~~~td~~~--i~---~~~~~L~~L~--C~~ITD~~l~~L~~~C 232 (354)
..++. .+|+|++|+++...+.|.|. +. ..+++|+.|+ ...|||.++..|...+
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 77764 67999999999888888774 22 4568888887 4479999999999855
No 21
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.52 E-value=3.2e-08 Score=87.19 Aligned_cols=123 Identities=13% Similarity=0.036 Sum_probs=81.0
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|++++|.+++-. .+ ..+++|+.|++ .+++- ..+ .++++|++|++++|. +++.....++ .+++|+
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~l~~n~~~~~--~~l-~~l~~L~~L~l~~n~-l~~~~~~~l~-~l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GI-EYAHNIKDLTINNIHATNY--NPI-SGLSNLERLRIMGKD-VTSDKIPNLS-GLTSLT 115 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TG-GGCTTCSEEEEESCCCSCC--GGG-TTCTTCCEEEEECTT-CBGGGSCCCT-TCTTCC
T ss_pred CCccEEeccCCCccChH--HH-hcCCCCCEEEccCCCCCcc--hhh-hcCCCCCEEEeECCc-cCcccChhhc-CCCCCC
Confidence 67888888888766422 23 34788888888 44332 233 358888888888764 4544344444 478888
Q ss_pred EeeCCCccccchhhh-hccCccccccc---cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571 191 DVEGDSWEELVNTDI-GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 253 (354)
Q Consensus 191 ~L~ls~~~~td~~~i-~~~~~~L~~L~---C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~ 253 (354)
+|+++++.+++...- -..+++|+.|+ |..+++-. ....+|+|+. |++.+|.++.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~------L~l~~n~i~~ 173 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKS------LNIQFDGVHD 173 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCE------EECTTBCCCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCE------EECCCCCCcC
Confidence 888888877764332 24567788777 44466542 3567888888 8888888654
No 22
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.44 E-value=1.3e-08 Score=87.07 Aligned_cols=127 Identities=11% Similarity=-0.011 Sum_probs=89.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++..+......+++|+.|+| .+++. . ...++++|++|++++|.-.+. +..+..++++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFGG--LDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCSC--CCHHHHHCTTCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCchH--HHHHHhhCCCCC
Confidence 789999999998876555544456899999999 55543 2 334689999999998864331 334455689999
Q ss_pred EeeCCCccccchh--hhhccCccccccc--cCCCCHHHH--HHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNT--DIGHGAQSLRWFV--WPNIDKDSI--EMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~--~i~~~~~~L~~L~--C~~ITD~~l--~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+|+++++.+++.. .....+++|+.|+ ...+++... ......+|+|+. +++.+|..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~------L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY------LDGYDRED 159 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE------ETTEETTS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE------ecCCCCCh
Confidence 9999988877643 2235677888887 333443321 246678999999 99999884
No 23
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.35 E-value=4.9e-08 Score=81.74 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=72.6
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++++.|++++|.+++..+......+++|+.|++ .+++. ....++++|++|++++|.-.+ . +..+...+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~-~-~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSG-G-LEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCS-C-THHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccc-h-HHHHhhhCCCCC
Confidence 678888888887775444444455788888888 45443 223467888888888775332 1 233444578888
Q ss_pred EeeCCCccccchh--hhhccCccccccc--cCCCCHHHH--HHHHhcCCccee
Q 018571 191 DVEGDSWEELVNT--DIGHGAQSLRWFV--WPNIDKDSI--EMMSTECPRIIV 237 (354)
Q Consensus 191 ~L~ls~~~~td~~--~i~~~~~~L~~L~--C~~ITD~~l--~~L~~~Cp~L~~ 237 (354)
+|+++++.+++.. .....+++|+.|+ ...+++..- ......+|+|+.
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 8888877766633 1234556666665 223433321 234566777777
No 24
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.31 E-value=2e-07 Score=81.95 Aligned_cols=127 Identities=11% Similarity=0.085 Sum_probs=93.8
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
+.. ++|++|++++|.+++.. .+. .+++|+.|++ .+++.+...+. ++++|++|++++| .+++.....++ .+
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~--~l~-~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l~-~l 135 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN--PIS-GLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKIN-TL 135 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG--GGT-TCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHHT-TC
T ss_pred HhcCCCCCEEEccCCCCCcch--hhh-cCCCCCEEEeECCccCcccChhhc-CCCCCCEEEecCC-ccCcHhHHHHh-hC
Confidence 444 89999999999766543 344 4999999999 77776666665 6999999999987 46665566666 48
Q ss_pred CCCcEeeCCCcc-ccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571 187 PKLNDVEGDSWE-ELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 253 (354)
Q Consensus 187 p~L~~L~ls~~~-~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~ 253 (354)
++|++|+++++. +.+.. .-..+++|+.|+ ...|++-. ....+|+|+. +++.|.++.+
T Consensus 136 ~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~------L~l~~N~i~~ 195 (197)
T 4ezg_A 136 PKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQ------LYAFSQTIGG 195 (197)
T ss_dssp SSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCE------EEECBC----
T ss_pred CCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCE------EEeeCcccCC
Confidence 999999999987 66544 235678899987 44566632 4568899999 9999988643
No 25
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.15 E-value=8.2e-06 Score=73.70 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=57.0
Q ss_pred CCCHHHHHHhhc-----CCccEEEeecCCCCHHHHHHHHH---hCCCCcEEEE---eecHHHHHHHHhc---CCCCCEEE
Q 018571 102 LLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDI---RITAAGVSEFLLH---CHSLETLR 167 (354)
Q Consensus 102 ~ltD~~L~~la~-----~~L~~LdLs~C~ITD~gL~~la~---~C~~L~~LdL---~ITd~gl~~La~~---Cp~Le~L~ 167 (354)
.|+|++...|+. ..|+.|+|++|.|+|.|...|+. ..+.|++|+| .|+|.|..+|++. .+.|++|+
T Consensus 53 ~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~ 132 (197)
T 1pgv_A 53 RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFK 132 (197)
T ss_dssp SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEE
T ss_pred CCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEE
Confidence 466666665553 56777777777777777665553 3566777777 6777776666653 34477777
Q ss_pred ecCCC--CCcHHHHHHHHh---cCCCCcEeeCC
Q 018571 168 CGGSP--RSNHAARRCLGI---LKPKLNDVEGD 195 (354)
Q Consensus 168 L~gC~--~ItD~sL~~La~---~cp~L~~L~ls 195 (354)
|+++. .++|.+-.+|+. .-+.|..|+++
T Consensus 133 L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 133 ADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 76542 566665444432 23566666664
No 26
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.12 E-value=3.2e-05 Score=69.81 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=70.8
Q ss_pred HHHHhhc--CCccEEEeecC-CCCHHHHHHHHHh---CCCCcEEEE---eecHHHHHHHHh---cCCCCCEEEecCCCCC
Q 018571 107 VIMSLAD--SSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDI---RITAAGVSEFLL---HCHSLETLRCGGSPRS 174 (354)
Q Consensus 107 ~L~~la~--~~L~~LdLs~C-~ITD~gL~~la~~---C~~L~~LdL---~ITd~gl~~La~---~Cp~Le~L~L~gC~~I 174 (354)
.+..+.. +.|++|+|+++ +|+|+|...|+.. ...|+.|+| .|+|.|..+||+ ..+.|++|+|++ ..|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcC
Confidence 4444443 89999999997 9999999988865 568999999 999999877773 568899999996 469
Q ss_pred cHHHHHHHHhcC---CCCcEeeCCC
Q 018571 175 NHAARRCLGILK---PKLNDVEGDS 196 (354)
Q Consensus 175 tD~sL~~La~~c---p~L~~L~ls~ 196 (354)
+|.|..+|+..+ ..|++|++++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCC
Confidence 999999888643 3467777754
No 27
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.10 E-value=1.6e-06 Score=72.44 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=69.7
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHH-HHHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAA-RRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~s-L~~La~~cp~L 189 (354)
++|+.|++++|.+++. ..+ ..+++|+.|++ .+++. +..+..++++|++|++++|. +++.. ...+ .++++|
T Consensus 42 ~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~-~~l~~L 115 (149)
T 2je0_A 42 EELEFLSTINVGLTSI--ANL-PKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPL-KKLENL 115 (149)
T ss_dssp TTCCEEECTTSCCCCC--TTC-CCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGG-GGCTTC
T ss_pred CCCcEEECcCCCCCCc--hhh-hcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHH-hhCCCC
Confidence 8899999999977765 333 34899999999 55543 44555679999999999886 55532 2333 458999
Q ss_pred cEeeCCCccccchhh----hhccCccccccc
Q 018571 190 NDVEGDSWEELVNTD----IGHGAQSLRWFV 216 (354)
Q Consensus 190 ~~L~ls~~~~td~~~----i~~~~~~L~~L~ 216 (354)
++|+++++.+++... ....+++|+.|+
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 999999887766543 345567777765
No 28
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.03 E-value=3.4e-06 Score=79.14 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=18.3
Q ss_pred cCCCCCEEEecCCCCCcHHHHHHHH--hcCCCCcEeeCCCcccc
Q 018571 159 HCHSLETLRCGGSPRSNHAARRCLG--ILKPKLNDVEGDSWEEL 200 (354)
Q Consensus 159 ~Cp~Le~L~L~gC~~ItD~sL~~La--~~cp~L~~L~ls~~~~t 200 (354)
++++|++|+|+++...++.++..-. ..+++|++|+++++.++
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 3455555555554433333332111 23455555555554443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.03 E-value=6.1e-06 Score=77.88 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=16.2
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI 146 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL 146 (354)
++|++|++++|.+++..- ...+++|+.|++
T Consensus 177 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l 206 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP---LASLTSLHYFTA 206 (347)
T ss_dssp TTCSEEECTTSCCCCCGG---GGGCTTCCEEEC
T ss_pred CCCCEEEccCCccccccc---ccCCCccceeec
Confidence 667777777665443222 223555555555
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.03 E-value=2.8e-06 Score=80.22 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=27.3
Q ss_pred CCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 186 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 186 cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
+++|++|+++++.+.+... ...+++|+.++ ...+++... ...+++|+. +++.+|.++
T Consensus 176 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~------L~l~~n~l~ 234 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP---VANMTRLNS------LKIGNNKIT 234 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCE------EECCSSCCC
T ss_pred CCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch---hhcCCcCCE------EEccCCccC
Confidence 4444444444443333222 23344555554 223332221 456777777 777777753
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.98 E-value=1.5e-06 Score=81.80 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=14.2
Q ss_pred CCccEEEeecCCCCHHHHHHH-HHhCCCCcEEEE
Q 018571 114 SSWEILDISGSDVSDFGLVKV-AQMCKSLKAVDI 146 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~l-a~~C~~L~~LdL 146 (354)
++|++|+|++|++++..-..+ ...+++|++|+|
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 128 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEE
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEc
Confidence 455555555554433222211 123455555555
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.97 E-value=1.6e-06 Score=73.90 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=71.3
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHH-HHHHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHA-ARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~-sL~~La~~cp~L 189 (354)
++|+.|+|++|.+++. ..+ ..+++|+.|+| .+++. +..+..++++|++|++++|. +++. .+..+. .+++|
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~-~l~~L 122 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNL-PKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK-KLECL 122 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSC-CCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS-SCSCC
T ss_pred CCCCEEeCcCCCCCCh--hhh-ccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh-cCCCC
Confidence 8999999999987765 333 34899999999 55543 44556679999999999984 4442 223333 58999
Q ss_pred cEeeCCCccccchhh----hhccCccccccc
Q 018571 190 NDVEGDSWEELVNTD----IGHGAQSLRWFV 216 (354)
Q Consensus 190 ~~L~ls~~~~td~~~----i~~~~~~L~~L~ 216 (354)
++|+++++.+++... ....+++|+.|+
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred CEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 999999987776543 346678888887
No 33
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.97 E-value=1e-06 Score=82.78 Aligned_cols=129 Identities=7% Similarity=-0.012 Sum_probs=64.9
Q ss_pred CCccEEEeecCCCCHHHHHHHH-HhCCCCcEEEE---eecHH----HHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhc
Q 018571 114 SSWEILDISGSDVSDFGLVKVA-QMCKSLKAVDI---RITAA----GVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 185 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la-~~C~~L~~LdL---~ITd~----gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~ 185 (354)
++|++|+|++|+++..+-..++ ..+++|+.|+| .+++. +...+. .+++|++|++++|.- +...-..+ .+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l-~~~~~~~~-~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHS-PAFSCEQV-RA 167 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSS-CCCCTTSC-CC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCc-chhhHHHh-cc
Confidence 5567777776655543333332 34666777777 44431 112233 566777777766642 11100111 24
Q ss_pred CCCCcEeeCCCccccch-hhh----hccCccccccc--cCCCC--HHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 186 KPKLNDVEGDSWEELVN-TDI----GHGAQSLRWFV--WPNID--KDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 186 cp~L~~L~ls~~~~td~-~~i----~~~~~~L~~L~--C~~IT--D~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+++|++|++++...+.. +.. ...+++|+.|+ ..+++ ......+...+++|+. |++.++.+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~------L~Ls~N~l 236 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHS------LDLSHNSL 236 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSS------EECTTSCC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCE------EECCCCCC
Confidence 56677777766654432 211 12445666665 33454 2223334456666666 66666664
No 34
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.93 E-value=6.3e-06 Score=77.64 Aligned_cols=119 Identities=9% Similarity=0.086 Sum_probs=63.8
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++|.+++..- ...+++|+.|+| .+++- ..+ ..+++|++|++++|. +++. ..+ ..+++|+
T Consensus 63 ~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~l~~n~-l~~~--~~l-~~l~~L~ 132 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV--SAI-AGLQSIKTLDLTSTQ-ITDV--TPL-AGLSNLQ 132 (308)
T ss_dssp TTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCC--GGG-TTCTTCCEEECTTSC-CCCC--GGG-TTCTTCC
T ss_pred CCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCc--hhh-cCCCCCCEEECCCCC-CCCc--hhh-cCCCCCC
Confidence 566666666665544322 233666666666 33321 122 246666666666664 2221 122 3466777
Q ss_pred EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
+|+++++.+++... -..+++|+.|+ ...+++-. . ...+++|+. |++.+|.++
T Consensus 133 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~------L~l~~n~l~ 186 (308)
T 1h6u_A 133 VLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTT------LKADDNKIS 186 (308)
T ss_dssp EEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCE------EECCSSCCC
T ss_pred EEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCE------EECCCCccC
Confidence 77776665554332 23456666666 22444322 1 456777777 777777753
No 35
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.93 E-value=3.2e-06 Score=78.09 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS 171 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC 171 (354)
++|+.|++++|++++.. .+. .+++|+.|+| .|++-.- ..++++|++|++++|
T Consensus 41 ~~L~~L~l~~n~i~~l~--~l~-~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA--GMQ-FFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRN 95 (263)
T ss_dssp TTCSEEECTTSCCCCCT--TGG-GCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSS
T ss_pred CcCcEEECcCCCcccch--HHh-hCCCCCEEECCCCccCCChh---hccCCCCCEEECCCC
Confidence 55555555555444321 122 2555555555 3332111 224555555555554
No 36
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.91 E-value=5e-06 Score=77.80 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=34.5
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|++++..- ...+++|+.|+| .+++ +..+ .++++|++|++++|. +++ +..+. ++++|+
T Consensus 68 ~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~--~~~l-~~l~~L~~L~L~~n~-i~~--~~~l~-~l~~L~ 137 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD--LSSL-KDLKKLKSLSLEHNG-ISD--INGLV-HLPQLE 137 (291)
T ss_dssp TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC--GGGG-TTCTTCCEEECTTSC-CCC--CGGGG-GCTTCC
T ss_pred CCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCC--Chhh-ccCCCCCEEECCCCc-CCC--Chhhc-CCCCCC
Confidence 555666666554443221 223555555555 3332 1122 245555555555543 221 11122 345555
Q ss_pred EeeCCCccccc
Q 018571 191 DVEGDSWEELV 201 (354)
Q Consensus 191 ~L~ls~~~~td 201 (354)
.|+++++.+++
T Consensus 138 ~L~l~~n~l~~ 148 (291)
T 1h6t_A 138 SLYLGNNKITD 148 (291)
T ss_dssp EEECCSSCCCC
T ss_pred EEEccCCcCCc
Confidence 55555544433
No 37
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.89 E-value=7.7e-06 Score=77.04 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=55.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++.. .+ ..+++|+.|++ .+++.. . ..++++|++|++++|. +++. .. ...+++|+
T Consensus 107 ~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~ 176 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVT--PL-AGLSNLQVLYLDLNQITNIS--P-LAGLTNLQYLSIGNAQ-VSDL--TP-LANLSKLT 176 (308)
T ss_dssp TTCCEEECTTSCCCCCG--GG-TTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECCSSC-CCCC--GG-GTTCTTCC
T ss_pred CCCCEEECCCCCCCCch--hh-cCCCCCCEEECCCCccCcCc--c-ccCCCCccEEEccCCc-CCCC--hh-hcCCCCCC
Confidence 55555555555444321 12 23556666665 332211 1 2345666666666553 2221 11 23456666
Q ss_pred EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
.|+++++.+.+... ...+++|+.|+ ...+++.. . ...+++|+. +++.+++
T Consensus 177 ~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~------L~l~~N~ 228 (308)
T 1h6u_A 177 TLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--P-LANTSNLFI------VTLTNQT 228 (308)
T ss_dssp EEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCE------EEEEEEE
T ss_pred EEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--c-ccCCCCCCE------EEccCCe
Confidence 66665555444332 23445566655 22333222 1 355666666 6666666
No 38
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.88 E-value=2.7e-06 Score=73.29 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=87.6
Q ss_pred CCHHHHHHhh---c-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCc
Q 018571 103 LADDVIMSLA---D-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSN 175 (354)
Q Consensus 103 ltD~~L~~la---~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~It 175 (354)
++.+.+.... + ++|++|++++|++++ +..+...+++|+.|++ .|++ +..+ .++++|++|+++++. ++
T Consensus 4 lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~--~~~l-~~l~~L~~L~Ls~N~-l~ 77 (176)
T 1a9n_A 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGF-PLLRRLKTLLVNNNR-IC 77 (176)
T ss_dssp CCHHHHHTSCEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE--ECCC-CCCSSCCEEECCSSC-CC
T ss_pred ccHHHHHHHHhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc--cccc-ccCCCCCEEECCCCc-cc
Confidence 4555554432 2 789999999997774 3445665679999999 4443 2233 468999999999885 33
Q ss_pred HHHHHHHHhcCCCCcEeeCCCccccchhh--hhccCccccccc--cCCCCH--HHHHHHHhcCCcceecCCCCceeecCC
Q 018571 176 HAARRCLGILKPKLNDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDK--DSIEMMSTECPRIIVNPKPSPFGFRGF 249 (354)
Q Consensus 176 D~sL~~La~~cp~L~~L~ls~~~~td~~~--i~~~~~~L~~L~--C~~ITD--~~l~~L~~~Cp~L~~~p~~~~L~l~gC 249 (354)
+-. ..+...+++|++|++++..+.+... .-..+++|+.|+ ...+++ .....+...+|+|+. +++.++
T Consensus 78 ~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~------Ld~~~n 150 (176)
T 1a9n_A 78 RIG-EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV------LDFQKV 150 (176)
T ss_dssp EEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE------ETTEEC
T ss_pred ccC-cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccce------eCCCcC
Confidence 211 1122468999999999887765443 234567788776 222322 112335678888988 888877
Q ss_pred C
Q 018571 250 E 250 (354)
Q Consensus 250 ~ 250 (354)
.
T Consensus 151 ~ 151 (176)
T 1a9n_A 151 K 151 (176)
T ss_dssp C
T ss_pred C
Confidence 6
No 39
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.87 E-value=7e-06 Score=77.15 Aligned_cols=132 Identities=11% Similarity=0.041 Sum_probs=77.6
Q ss_pred CCccEEEeecCCCCHH--HHHHHHHh-CCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHH-HHH-hc
Q 018571 114 SSWEILDISGSDVSDF--GLVKVAQM-CKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARR-CLG-IL 185 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~--gL~~la~~-C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~-~La-~~ 185 (354)
++|++|+|++|.+++. .+..+... +++|++|+| .++...-..+ .++++|++|+++++...++.++. .+. ..
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 8899999999866654 33333321 388888888 4433221222 25778888888877655443332 221 45
Q ss_pred CCCCcEeeCCCccccchhhh----hccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 186 KPKLNDVEGDSWEELVNTDI----GHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 186 cp~L~~L~ls~~~~td~~~i----~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
+++|++|+++++.+...+.+ ...+++|+.|+ ...+++..-......+++|+. |++.+|.++
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~------L~Ls~N~l~ 266 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS------LNLSFTGLK 266 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE------EECTTSCCS
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE------EECCCCccC
Confidence 77888888877776643322 24556777776 334444221112234577777 888887754
No 40
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.86 E-value=9.1e-06 Score=84.51 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=61.8
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++|.+++. ..+. .|++|+.|+| .|++ +..+ .+|++|+.|+|++|.- ++. ..+ ..|++|+
T Consensus 87 ~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N~l~~--l~~l-~~l~~L~~L~Ls~N~l-~~l--~~l-~~l~~L~ 156 (605)
T 1m9s_A 87 KNLGWLFLDENKIKDL--SSLK-DLKKLKSLSLEHNGISD--INGL-VHLPQLESLYLGNNKI-TDI--TVL-SRLTKLD 156 (605)
T ss_dssp TTCCEEECCSSCCCCC--TTST-TCTTCCEEECTTSCCCC--CGGG-GGCTTCSEEECCSSCC-CCC--GGG-GSCTTCS
T ss_pred CCCCEEECcCCCCCCC--hhhc-cCCCCCEEEecCCCCCC--Cccc-cCCCccCEEECCCCcc-CCc--hhh-cccCCCC
Confidence 5566666666544431 1222 2566666666 3332 1222 3566666666666532 221 122 2466677
Q ss_pred EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
.|+++++.+.+... ...+++|+.|+ ...|++- . -...|++|+. |++.+|++
T Consensus 157 ~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~------L~L~~N~l 209 (605)
T 1m9s_A 157 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDV------LELFSQEC 209 (605)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSE------EECCSEEE
T ss_pred EEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--h-HHccCCCCCE------EEccCCcC
Confidence 77666665554333 34556677666 3345442 1 2456777777 77777774
No 41
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.82 E-value=4.8e-06 Score=86.63 Aligned_cols=123 Identities=13% Similarity=0.038 Sum_probs=72.8
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
+.. ++|+.|+|++|.+++..- + ..|++|+.|+| .|++ +..+ ..|++|++|+|++|.-.. +..+ .+|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~l~~--l~~l-~~l~~L~~L~Ls~N~l~~---l~~l-~~l 130 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--L-TNLKNLGWLFLDENKIKD--LSSL-KDLKKLKSLSLEHNGISD---INGL-VHL 130 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--G-GGCTTCCEEECCSSCCCC--CTTS-TTCTTCCEEECTTSCCCC---CGGG-GGC
T ss_pred HccCCCCCEEEeeCCCCCCChh--h-ccCCCCCEEECcCCCCCC--Chhh-ccCCCCCEEEecCCCCCC---Cccc-cCC
Confidence 444 777788887775554322 3 34777888777 4443 2223 357778888877764322 1223 347
Q ss_pred CCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571 187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 253 (354)
Q Consensus 187 p~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~ 253 (354)
++|+.|+++++.+.+... ...+++|+.|+ ...+++..- ...|++|+. |++.+|.++.
T Consensus 131 ~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~------L~Ls~N~i~~ 189 (605)
T 1m9s_A 131 PQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN------LYLSKNHISD 189 (605)
T ss_dssp TTCSEEECCSSCCCCCGG-GGSCTTCSEEECCSSCCCCCGG---GTTCTTCCE------EECCSSCCCB
T ss_pred CccCEEECCCCccCCchh-hcccCCCCEEECcCCcCCCchh---hccCCCCCE------EECcCCCCCC
Confidence 777777777776665422 24566777776 233443221 566777777 7777777543
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.82 E-value=8.8e-07 Score=81.80 Aligned_cols=148 Identities=11% Similarity=-0.055 Sum_probs=75.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---e-ecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---R-ITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~-ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L 189 (354)
++|++|+|++|.+++..-..+.. +++|+.|+| . ++......+ .++++|++|++++|.- ++..-.. -.++++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~L~l~~n~l-~~~~~~~-~~~l~~L 131 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGL-QELGPGL-FRGLAAL 131 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSCTTCCCCCTTTT-TTCTTCCEEECTTSCC-CCCCTTT-TTTCTTC
T ss_pred CCCCEEECCCCccceeCHhhcCC-ccCCCEEeCCCCCCccccCHHHh-cCCcCCCEEECCCCcC-CEECHhH-hhCCcCC
Confidence 66777777777655433333333 677777777 2 333222222 3567777777776642 2110111 2346777
Q ss_pred cEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcc
Q 018571 190 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFV 266 (354)
Q Consensus 190 ~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v 266 (354)
++|++++..+..... .-..+++|+.|+ ..++++..- .....+++|+. +++.++.++... +......+.+
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~------L~l~~n~l~~~~-~~~~~~l~~L 203 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDR------LLLHQNRVAHVH-PHAFRDLGRL 203 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCE------EECCSSCCCEEC-TTTTTTCTTC
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCE------EECCCCcccccC-HhHccCcccc
Confidence 777777665543221 123456777766 233442111 12345777777 888887753321 2222334555
Q ss_pred ccccccc
Q 018571 267 NDIDPSA 273 (354)
Q Consensus 267 ~~~~~~~ 273 (354)
+.++...
T Consensus 204 ~~L~l~~ 210 (285)
T 1ozn_A 204 MTLYLFA 210 (285)
T ss_dssp CEEECCS
T ss_pred cEeeCCC
Confidence 5555443
No 43
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.80 E-value=1.3e-06 Score=76.84 Aligned_cols=115 Identities=9% Similarity=0.015 Sum_probs=74.7
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++ +..+. .+++|+.|++ .++ .+..+...+++|++|++++|. +++ +..++ .+++|+
T Consensus 48 ~~L~~L~ls~n~l~~--l~~~~-~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~-l~~--l~~~~-~l~~L~ 118 (198)
T 1ds9_A 48 KACKHLALSTNNIEK--ISSLS-GMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQ-IAS--LSGIE-KLVNLR 118 (198)
T ss_dssp TTCSEEECSEEEESC--CCCHH-HHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEE-CCC--HHHHH-HHHHSS
T ss_pred CCCCEEECCCCCCcc--ccccc-cCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCc-CCc--CCccc-cCCCCC
Confidence 788899998886655 22333 4788999988 555 233444567888999988874 443 22444 368888
Q ss_pred EeeCCCccccchhh--hhccCccccccc--cCCCCH---------HHHHHHHhcCCccee
Q 018571 191 DVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDK---------DSIEMMSTECPRIIV 237 (354)
Q Consensus 191 ~L~ls~~~~td~~~--i~~~~~~L~~L~--C~~ITD---------~~l~~L~~~Cp~L~~ 237 (354)
+|++++..+++.+. ....+++|+.|+ ...+++ .....+...+|+|+.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 88888877776443 234567777776 222322 233445678889888
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.80 E-value=2.4e-07 Score=87.43 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=68.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++..-..+. .+++|+.|+| .+++.....+..++++|++|++++|.-.+-. .. ..+++|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~-~~l~~L~ 194 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQ-VVFAKLK 194 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE---CC-CCCTTCC
T ss_pred CCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc---cc-cccccCC
Confidence 4566666666655543222222 2566666666 4443333334445666666666665422110 11 1256666
Q ss_pred EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcccc
Q 018571 191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVND 268 (354)
Q Consensus 191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~ 268 (354)
+|++++..+++.......+++|+.|+ ...++. +......+++|+. +++.++++.-..++......+.++.
T Consensus 195 ~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~------L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEH------FDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCE------EECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred EEECCCCcCCcchhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCE------EEccCCCccCcCHHHHHhccccceE
Confidence 66666655543222123445666655 223331 1222345566666 6666666553344444444444443
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.80 E-value=2.1e-06 Score=79.18 Aligned_cols=81 Identities=9% Similarity=0.001 Sum_probs=34.8
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++. ..+. .+++|+.|+| .++...-. ...++++|++|++++|. +++..- ..-..+++|+
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~ 136 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALK-ELTNLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQ-LQSLPD-GVFDKLTNLT 136 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGT-TCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCC
T ss_pred CCCcEEECCCCCCCCc--hhhc-CCCCCCEEECCCCccCccChh-HhcCCcCCCEEECCCCc-CCccCH-HHhccCCCCC
Confidence 5566666666544432 1222 3556666666 33311111 11245555555555553 111000 0112345555
Q ss_pred EeeCCCcccc
Q 018571 191 DVEGDSWEEL 200 (354)
Q Consensus 191 ~L~ls~~~~t 200 (354)
+|+++++.++
T Consensus 137 ~L~L~~n~l~ 146 (272)
T 3rfs_A 137 YLNLAHNQLQ 146 (272)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCccC
Confidence 5555555433
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.79 E-value=3.9e-06 Score=77.33 Aligned_cols=150 Identities=9% Similarity=0.078 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHhhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCC
Q 018571 86 PVDIKIAIASIARRRKLLADDVIMSLAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCH 161 (354)
Q Consensus 86 P~~ik~~ll~ll~~~~~ltD~~L~~la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp 161 (354)
|.....++....-....++|. ..+.+ ++|+.|++++|.+++.. .+. .+++|+.|+| .+++ +..+ .+++
T Consensus 14 ~~~~~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~--~l~-~l~~L~~L~l~~n~l~~--~~~l-~~l~ 85 (272)
T 3rfs_A 14 PDDAFAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ--GIQ-YLPNVRYLALGGNKLHD--ISAL-KELT 85 (272)
T ss_dssp CSHHHHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCT--TGG-GCTTCCEEECTTSCCCC--CGGG-TTCT
T ss_pred CCchHHHHHHHHhcCcccccc--cccccccceeeeeeCCCCccccc--ccc-cCCCCcEEECCCCCCCC--chhh-cCCC
Confidence 444444444433333334332 12333 89999999999766532 233 4999999999 5554 2334 4799
Q ss_pred CCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceec
Q 018571 162 SLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVN 238 (354)
Q Consensus 162 ~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~ 238 (354)
+|++|++++|. +++..- ..-.++++|++|+++++.++.... ....+++|+.|+ ..+++... ......+++|+.
T Consensus 86 ~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~- 161 (272)
T 3rfs_A 86 NLTYLILTGNQ-LQSLPN-GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTE- 161 (272)
T ss_dssp TCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE-
T ss_pred CCCEEECCCCc-cCccCh-hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCE-
Confidence 99999999984 332111 112458999999999887664322 124567788776 33444211 122356788888
Q ss_pred CCCCceeecCCCCC
Q 018571 239 PKPSPFGFRGFEVP 252 (354)
Q Consensus 239 p~~~~L~l~gC~~s 252 (354)
|++.+|.++
T Consensus 162 -----L~l~~n~l~ 170 (272)
T 3rfs_A 162 -----LDLSYNQLQ 170 (272)
T ss_dssp -----EECCSSCCC
T ss_pred -----EECCCCCcC
Confidence 888888754
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.78 E-value=1.5e-06 Score=82.90 Aligned_cols=124 Identities=12% Similarity=0.099 Sum_probs=56.0
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHH-------
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLG------- 183 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La------- 183 (354)
++|++|+|++|.++ .+-.....+++|+.|+| .++ .+..-..++++|++|++++|..++...- .++
T Consensus 104 ~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~~~~~~~ 178 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPE-PLASTDASGE 178 (328)
T ss_dssp TTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCS-CSEEEC-CCC
T ss_pred CCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccCh-hHhhccchhh
Confidence 56666666666544 12111133666666666 333 1111123566666666666643321100 010
Q ss_pred -hcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 184 -ILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 184 -~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
.++++|++|+++++.++.....-..+++|+.|+ ...++. +..-...+++|+. |++.+|.
T Consensus 179 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~------L~Ls~n~ 240 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEE------LDLRGCT 240 (328)
T ss_dssp EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCE------EECTTCT
T ss_pred hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCE------EECcCCc
Confidence 125666666655544332111123345555554 222331 1112345556666 6666655
No 48
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.77 E-value=7.8e-06 Score=76.50 Aligned_cols=122 Identities=18% Similarity=0.159 Sum_probs=89.0
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
+.. ++|+.|+|++|.+++. ..+ ..+++|+.|+| .+++ +..+ .++++|++|++++|. +++- ..+ ..+
T Consensus 86 l~~l~~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~L~~n~i~~--~~~l-~~l~~L~~L~l~~n~-l~~~--~~l-~~l 155 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDL--SSL-KDLKKLKSLSLEHNGISD--INGL-VHLPQLESLYLGNNK-ITDI--TVL-SRL 155 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCG--GGG-TTCTTCCEEECTTSCCCC--CGGG-GGCTTCCEEECCSSC-CCCC--GGG-GGC
T ss_pred cccCCCCCEEECCCCcCCCC--hhh-ccCCCCCEEECCCCcCCC--Chhh-cCCCCCCEEEccCCc-CCcc--hhh-ccC
Confidence 555 8999999999987763 333 44899999999 5554 2233 478999999999885 3332 233 458
Q ss_pred CCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 187 PKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 187 p~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
++|++|+++++.+.+... ...+++|+.|+ ...+++- .. ...+++|+. +++.+++++
T Consensus 156 ~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~------L~l~~n~i~ 213 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDV------LELFSQECL 213 (291)
T ss_dssp TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSE------EEEEEEEEE
T ss_pred CCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC--hh-hccCCCCCE------EECcCCccc
Confidence 999999999988776544 45678899887 4456653 22 567899999 999998843
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.74 E-value=1.1e-05 Score=80.54 Aligned_cols=15 Identities=0% Similarity=0.009 Sum_probs=8.3
Q ss_pred cCCcceecCCCCceeecCCCC
Q 018571 231 ECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 231 ~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
.+++|+. +++.+|.+
T Consensus 442 ~l~~L~~------L~L~~N~l 456 (520)
T 2z7x_B 442 KLEALQE------LNVASNQL 456 (520)
T ss_dssp GCTTCCE------EECCSSCC
T ss_pred cCCCCCE------EECCCCcC
Confidence 5555555 55555553
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.73 E-value=2.3e-05 Score=77.62 Aligned_cols=80 Identities=6% Similarity=-0.081 Sum_probs=40.2
Q ss_pred cCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcce
Q 018571 159 HCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRII 236 (354)
Q Consensus 159 ~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~ 236 (354)
.+++|++|++++|.-.+-. .+ ..+++|+.|+++++..++...+ ..+++|+.|+ ...+++. . -...|++|+
T Consensus 285 ~l~~L~~L~L~~n~l~~~~---~~-~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~ 356 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDIS---PI-SNLKNLTYLTLYFNNISDISPV-SSLTKLQRLFFYNNKVSDV--S-SLANLTNIN 356 (466)
T ss_dssp TCTTCSEEECCSSCCSCCG---GG-GGCTTCSEEECCSSCCSCCGGG-GGCTTCCEEECCSSCCCCC--G-GGTTCTTCC
T ss_pred CCCccCeEEcCCCcccCch---hh-cCCCCCCEEECcCCcCCCchhh-ccCccCCEeECCCCccCCc--h-hhccCCCCC
Confidence 4555555555555322111 12 2456666666666555443332 3456666665 2234432 1 234667777
Q ss_pred ecCCCCceeecCCCCC
Q 018571 237 VNPKPSPFGFRGFEVP 252 (354)
Q Consensus 237 ~~p~~~~L~l~gC~~s 252 (354)
. +++.+|.++
T Consensus 357 ~------L~l~~n~l~ 366 (466)
T 1o6v_A 357 W------LSAGHNQIS 366 (466)
T ss_dssp E------EECCSSCCC
T ss_pred E------EeCCCCccC
Confidence 7 777777643
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.72 E-value=5.1e-07 Score=90.95 Aligned_cols=138 Identities=12% Similarity=0.094 Sum_probs=73.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++|.++...-..+. .+++|+.|+| .++......+..++++|++|+|++|.-.+-. .+ .++++|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~---~~-~~l~~L~ 194 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQ-VVFAKLK 194 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE---CC-CCCTTCC
T ss_pred CCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc---cc-ccCCCCC
Confidence 5677777777765543222222 3677777777 4444333444445677777777776522211 11 1367777
Q ss_pred EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCC
Q 018571 191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDP 264 (354)
Q Consensus 191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~ 264 (354)
.|++++..+++.......+++|+.|+ ...++. +......+++|+. +++.|+++....+|......+
T Consensus 195 ~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~------L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEH------FDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCE------EECTTCCBCHHHHHHHHTTCH
T ss_pred EEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCE------EEcCCCCCcCcchHHHHHhCC
Confidence 77777666554322223456666665 333442 2222345566666 777777765334444333333
No 52
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.72 E-value=1.1e-06 Score=85.91 Aligned_cols=128 Identities=12% Similarity=-0.031 Sum_probs=63.2
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
+++++|+|++|.+++..-..+.. +++|+.|+| .++..--.....++++|++|+|++|.- ++..-..+ .++++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAF-NGLANLE 106 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTT-TTCTTCC
T ss_pred CccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhc-cCcccCC
Confidence 56677777776655433233333 667777776 221000001113466677777766642 21111122 2366677
Q ss_pred EeeCCCccccchhhh---hccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 191 DVEGDSWEELVNTDI---GHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 191 ~L~ls~~~~td~~~i---~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
+|+++++.+++.... -..+++|++|+ ..+++...-..+...+++|+. +++.+|.
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~------L~L~~n~ 165 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV------LDLTFNK 165 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE------EECTTCC
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE------EeCCCCc
Confidence 777766655542221 23455666665 333443222223456667777 7776666
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.68 E-value=2.9e-05 Score=76.86 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=42.1
Q ss_pred cCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcce
Q 018571 159 HCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRII 236 (354)
Q Consensus 159 ~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~ 236 (354)
+|++|++|++++|.-.+.. . ...+++|+.|+++++...+... ...+++|+.|+ ..++++..- ...+++|+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~ 334 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNIS---P-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQ 334 (466)
T ss_dssp TCTTCSEEECCSSCCCCCG---G-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCC
T ss_pred cCCCCCEEECCCCccCccc---c-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccCC
Confidence 4555555555554322111 1 2235566666665555444322 23456677766 234443321 35778888
Q ss_pred ecCCCCceeecCCCCCc
Q 018571 237 VNPKPSPFGFRGFEVPR 253 (354)
Q Consensus 237 ~~p~~~~L~l~gC~~s~ 253 (354)
. +++.+|.++.
T Consensus 335 ~------L~l~~n~l~~ 345 (466)
T 1o6v_A 335 R------LFFYNNKVSD 345 (466)
T ss_dssp E------EECCSSCCCC
T ss_pred E------eECCCCccCC
Confidence 8 8888887543
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.66 E-value=1.2e-06 Score=80.48 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=44.9
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|++++..-..+. .+++|+.|+| .++......+ .++++|++|+++++.-.+-. -.. -.++++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~ 127 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLE-NFP-IGHLKTLK 127 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTSCCCCST-TCC-CTTCTTCC
T ss_pred cCCcEEECCCCcCCccCHHHcc-CCcCCCEEECCCCccCccChhhh-cCCccccEEECCCCCccccC-chh-cccCCCCC
Confidence 5666666666654432222222 2566666666 2322111112 24566666666655321100 000 12356666
Q ss_pred EeeCCCccccchh--hhhccCccccccc
Q 018571 191 DVEGDSWEELVNT--DIGHGAQSLRWFV 216 (354)
Q Consensus 191 ~L~ls~~~~td~~--~i~~~~~~L~~L~ 216 (354)
+|++++..+.+.. ..-..+++|+.|+
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred EEECcCCccceecCchhhccCCCCCEEE
Confidence 6666655544311 1123345566655
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.66 E-value=1.7e-05 Score=77.44 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=34.6
Q ss_pred CCccEEEeecCCCCHHHHHH-HHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCC
Q 018571 114 SSWEILDISGSDVSDFGLVK-VAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSP 172 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~-la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~ 172 (354)
++|++|+|++|.+++..+.. ....+++|++|+| .++...-..+..++++|++|+++++.
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 67777777777766654443 1223677777777 44432222223467777777777663
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.65 E-value=1.6e-06 Score=87.02 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=24.0
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS 171 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC 171 (354)
++|++|+|++|++++..-..+. .|++|+.|+| .+++..-..+ .++++|++|+++++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n 110 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVET 110 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTS
T ss_pred CCceEEECCCCcCCccCccccc-CchhCCEEeCcCCcCCccCHhhh-cCcccccccccccc
Confidence 5555555555544432222222 2555555555 2222111112 24555555555554
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.65 E-value=1.2e-06 Score=81.53 Aligned_cols=129 Identities=15% Similarity=0.013 Sum_probs=51.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++.........+++|+.|++ .++...-. ...++++|++|++++|. +++..+......+++|+
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLT 178 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCC
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCc-cccccchhHHhhCcCCC
Confidence 455555555553332221111223555555555 22211111 11245555555555542 11110111122345555
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+|+++++.+++... .-..+++|+.|+ ...+++.... ....+++|+. +++.+|.+
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~------L~L~~N~l 235 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQV------LDYSLNHI 235 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-GGTTCTTCCE------EECTTSCC
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh-hccCcccCCE------eECCCCCC
Confidence 55555554443211 112344555554 2222221111 1234556666 66666653
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.64 E-value=3.4e-06 Score=77.78 Aligned_cols=127 Identities=9% Similarity=-0.022 Sum_probs=76.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++..-..+ ..+++|+.|+| .++...-..+ .++++|++|+++++. +++..-..+ ..+++|+
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~ 180 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNR-ISSVPERAF-RGLHSLD 180 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCEECTTTT-TTCTTCC
T ss_pred cCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHh-ccCCCccEEECCCCc-ccccCHHHh-cCccccC
Confidence 788888888886664332223 33788888888 4442221112 357888888888773 332111112 2478888
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+|++++..+++... .-..+++|+.|+ ..++++... .....+++|+. +++.++++
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~------L~l~~N~~ 237 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQY------LRLNDNPW 237 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCE------EECCSSCE
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCE------EeccCCCc
Confidence 88888776655422 124567777776 334554322 23457888888 88888884
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.63 E-value=3.3e-06 Score=80.46 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=75.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|++++..-..+ ..+++|++|+| .++.-.......++++|++|++++|..+++..-..+ ..+++|+
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~ 177 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWF-KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLE 177 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHH-TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHhHh-CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCC
Confidence 677777777776554332223 33777777777 444211101224577777777777654443211122 2367777
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 253 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~ 253 (354)
+|+++++.+.+... .-..+++|+.|+ ...++... ..+...+++|+. +++.+|.++.
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~------L~L~~n~l~~ 236 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL-EIFVDVTSSVEC------LELRDTDLDT 236 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH-HHHHHHTTTEEE------EEEESCBCTT
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccch-hhhhhhcccccE------EECCCCcccc
Confidence 77776665543311 123467788877 34455433 344567899999 9999998654
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.63 E-value=9e-07 Score=82.43 Aligned_cols=132 Identities=9% Similarity=-0.020 Sum_probs=89.1
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
+.. ++|++|+|++|.++...-..+ ..+++|+.|+| .+++..+.....++++|++|++++|. +++.....+ ..+
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l 198 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSL 198 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTC
T ss_pred hhhccCCCEEECCCCcCCccchhhc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHh-cCC
Confidence 444 899999999997654332233 34899999999 66653333344578999999999984 333211223 358
Q ss_pred CCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 187 PKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 187 p~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
++|++|++++..+++... ....+++|+.|+ ...+++.....+....++|+. +++.|+++
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~------L~L~~N~~ 260 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF------LNLTQNDF 260 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE------EECTTCCE
T ss_pred CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE------EEccCCCe
Confidence 999999999987766432 235678899887 445554433333322348999 99999995
No 61
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.61 E-value=1.2e-05 Score=74.20 Aligned_cols=122 Identities=12% Similarity=0.038 Sum_probs=88.0
Q ss_pred Hhhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhc
Q 018571 110 SLAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 185 (354)
Q Consensus 110 ~la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~ 185 (354)
.+.. ++|+.|+|++|++++..- ...+++|+.|+| .+++ +..+. . ++|++|++++|. +++- ..+ .+
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~--l~~~~-~-~~L~~L~L~~N~-l~~~--~~l-~~ 126 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKN--LNGIP-S-ACLSRLFLDNNE-LRDT--DSL-IH 126 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSC--CTTCC-C-SSCCEEECCSSC-CSBS--GGG-TT
T ss_pred HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCC--cCccc-c-CcccEEEccCCc-cCCC--hhh-cC
Confidence 4445 899999999997776443 345999999999 5544 22232 2 899999999985 4332 233 35
Q ss_pred CCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 186 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 186 cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
+++|+.|++++..+++... ...+++|+.|+ ...+++. .....+++|+. +++.+++++
T Consensus 127 l~~L~~L~Ls~N~i~~~~~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~------L~l~~N~~~ 185 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNW------IDLTGQKCV 185 (263)
T ss_dssp CTTCCEEECTTSCCCBCGG-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCE------EEEEEEEEE
T ss_pred cccccEEECCCCcCCCChH-HccCCCCCEEECCCCcCcch---HHhccCCCCCE------EeCCCCccc
Confidence 8999999999988776543 34578898887 4456554 34567899999 999999843
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.59 E-value=6.7e-06 Score=78.26 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=93.3
Q ss_pred cCCccEEEeecCCCCHHHHH-HHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCC
Q 018571 113 DSSWEILDISGSDVSDFGLV-KVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 188 (354)
Q Consensus 113 ~~~L~~LdLs~C~ITD~gL~-~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~ 188 (354)
.++++.|+|++++++. +- .+.. +++|+.|+| .++ .+..-..++++|++|+|++|. ++ .+-.-..++++
T Consensus 80 ~~~l~~L~L~~n~l~~--lp~~l~~-l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~-l~--~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ--FPDQAFR-LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNP-LR--ALPASIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCSS--CCSCGGG-GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCC-CC--CCCGGGGGCTT
T ss_pred ccceeEEEccCCCchh--cChhhhh-CCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCc-cc--cCcHHHhcCcC
Confidence 3899999999997662 22 2444 899999999 555 222223579999999999985 33 11111345899
Q ss_pred CcEeeCCCccccchhh--h--------hccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCcccc
Q 018571 189 LNDVEGDSWEELVNTD--I--------GHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAF 256 (354)
Q Consensus 189 L~~L~ls~~~~td~~~--i--------~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al 256 (354)
|++|+++++..+...- + -.++++|+.|+ ...++ .+..-...+++|+. |++.+|.++ .+
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~------L~L~~N~l~--~l 221 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKS------LKIRNSPLS--AL 221 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCE------EEEESSCCC--CC
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCE------EEccCCCCC--cC
Confidence 9999998765443211 1 13478899987 33455 22233568999999 999999965 24
Q ss_pred ccccCCCCccccccccc
Q 018571 257 PDITLDDPFVNDIDPSA 273 (354)
Q Consensus 257 ~~v~~~~~~v~~~~~~~ 273 (354)
+......+.++.++...
T Consensus 222 ~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRG 238 (328)
T ss_dssp CGGGGGCTTCCEEECTT
T ss_pred chhhccCCCCCEEECcC
Confidence 44344455666655543
No 63
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.59 E-value=4.7e-06 Score=88.17 Aligned_cols=59 Identities=8% Similarity=0.024 Sum_probs=26.9
Q ss_pred cCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 185 LKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 185 ~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
.|++|++|+++++..+.....-..+++|++|+ ...+++.... ....|++|+. |++.+|.
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~------L~Ls~n~ 258 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKL------LNISSNQ 258 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCE------EECCSSC
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH-HHhcCCCCCE------EECCCCc
Confidence 34555555554443332111123345566655 2334433222 2345666666 6666665
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.57 E-value=2.9e-05 Score=77.47 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=94.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
.+|+.|++++|.+++..+ ...+++|+.|++ .+++.....+ .++++|++|++++|.-.+-..+......+++|+
T Consensus 302 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~ 377 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377 (520)
T ss_dssp CCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC
T ss_pred CceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCC
Confidence 556666666664443221 135899999999 6666433334 478999999999886443233333344689999
Q ss_pred EeeCCCccccchhh--hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcc
Q 018571 191 DVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFV 266 (354)
Q Consensus 191 ~L~ls~~~~td~~~--i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v 266 (354)
+|++++..+.+... ....+++|+.|+ ...+++.....+ .++|+. |++.+|.++ .+|.-....+.+
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~------L~Ls~N~l~--~ip~~~~~l~~L 446 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKV------LDLHSNKIK--SIPKQVVKLEAL 446 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTTCCE------EECCSSCCC--CCCGGGGGCTTC
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh---cccCCE------EECCCCccc--ccchhhhcCCCC
Confidence 99999887765221 134567888887 445664322211 168999 999999976 566544466666
Q ss_pred cccccccccc
Q 018571 267 NDIDPSAWAV 276 (354)
Q Consensus 267 ~~~~~~~W~v 276 (354)
+.++...=..
T Consensus 447 ~~L~L~~N~l 456 (520)
T 2z7x_B 447 QELNVASNQL 456 (520)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcC
Confidence 6665544333
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.56 E-value=9e-05 Score=74.09 Aligned_cols=85 Identities=14% Similarity=0.015 Sum_probs=37.3
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHH--HhcCCCCCEEEecCCCCCcHHHHHHHHhcCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEF--LLHCHSLETLRCGGSPRSNHAARRCLGILKPK 188 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~L--a~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~ 188 (354)
++|+.|++++|.++...- .+...+++|+.|+| .+++...... ...+++|++|++++|.-.+-.........+++
T Consensus 310 ~~L~~L~l~~n~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCccccCCH-HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 445555555554332111 12223566666666 4444332211 12455666666665532221111122334555
Q ss_pred CcEeeCCCccc
Q 018571 189 LNDVEGDSWEE 199 (354)
Q Consensus 189 L~~L~ls~~~~ 199 (354)
|++|+++++..
T Consensus 389 L~~L~Ls~N~l 399 (549)
T 2z81_A 389 LTSLDISRNTF 399 (549)
T ss_dssp CCEEECTTCCC
T ss_pred CCEEECCCCCC
Confidence 55555555443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.53 E-value=4.3e-06 Score=78.81 Aligned_cols=141 Identities=9% Similarity=-0.068 Sum_probs=77.6
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|++++|.+++... ..+++|+.|++ .++...-..+ .++++|++|+++++. +++.....+...+++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhh-hccCCCCEEECCCCC-CCcccHHHHhhccCcCC
Confidence 455555555554443221 12566666666 4443211122 356778888888763 44333334455678888
Q ss_pred EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcccc
Q 018571 191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVND 268 (354)
Q Consensus 191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~ 268 (354)
+|+++++.+++.... ..+++|+.|+ ...++.-.- -...+++|+. |++.+|.++ .+|......+.++.
T Consensus 173 ~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~------L~L~~N~l~--~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTW------ISLRNNKLV--LIEKALRFSQNLEH 241 (317)
T ss_dssp EEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECG--GGGGGTTCSE------EECTTSCCC--EECTTCCCCTTCCE
T ss_pred EEECCCCcCcccccc-cccccCCEEECCCCcCCcchh--hhcccCcccE------EECcCCccc--chhhHhhcCCCCCE
Confidence 888877766554221 2367777776 334443211 1456788888 888888865 34444444455555
Q ss_pred ccc
Q 018571 269 IDP 271 (354)
Q Consensus 269 ~~~ 271 (354)
++.
T Consensus 242 L~l 244 (317)
T 3o53_A 242 FDL 244 (317)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
No 67
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.52 E-value=1.9e-05 Score=74.33 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=28.1
Q ss_pred cCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCccccccc
Q 018571 208 GAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDP 271 (354)
Q Consensus 208 ~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~~~~ 271 (354)
.+++|+.|+ ...+++.... ....+++|+. |++.+|.++ .+|......+.++.++.
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~------L~L~~N~l~--~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNG-SLANTPHLRE------LHLNNNKLV--KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTT-TGGGSTTCCE------EECCSSCCS--SCCTTTTTCSSCCEEEC
T ss_pred CCCCCCEEECCCCcCceeChh-hccCCCCCCE------EECCCCcCc--cCChhhccCCCcCEEEC
Confidence 455666665 2334332211 2245677777 777777754 34433344444544444
No 68
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.52 E-value=2.7e-06 Score=86.41 Aligned_cols=97 Identities=13% Similarity=-0.009 Sum_probs=44.7
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCC--cHHHHHHHHhcCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRS--NHAARRCLGILKPK 188 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~I--tD~sL~~La~~cp~ 188 (354)
++|++|+|++|.+++..-..+ ..+++|++|+| .++...-..+ .+|++|++|++++|.-. .... + .++++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~---~-~~l~~ 129 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAW-HGLHHLSNLILTGNPIQSFSPGSF-SGLTSLENLVAVETKLASLESFP---I-GQLIT 129 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCCCCTTSS-TTCTTCCEEECTTSCCCCSSSSC---C-TTCTT
T ss_pred ccCcEEeCCCCcccccCHHHh-hchhhcCEeECCCCcccccChhhc-CCcccCCEEEccCCccccccccc---c-CCCCC
Confidence 566666666665443221222 23566666666 3332211112 24666666666665321 1111 2 23566
Q ss_pred CcEeeCCCccccchh--hhhccCccccccc
Q 018571 189 LNDVEGDSWEELVNT--DIGHGAQSLRWFV 216 (354)
Q Consensus 189 L~~L~ls~~~~td~~--~i~~~~~~L~~L~ 216 (354)
|++|+++++.+.+.. ..-..+++|+.|+
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence 666666655544311 1123445566555
No 69
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.51 E-value=4.7e-06 Score=88.15 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=96.7
Q ss_pred hhc-CCccEEEeecCCCCHHHHH--HHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHH--H
Q 018571 111 LAD-SSWEILDISGSDVSDFGLV--KVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRC--L 182 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~--~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~--L 182 (354)
+.. ++|++|+|++|.++..-.. .+.. |++|++|+| .++...-..+..++++|++|++++|.- ++..... +
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~ 173 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGANVVGWVL 173 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC-EEETHHHHHH
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc-CCcCChhhhh
Confidence 344 8999999999976642222 4444 999999999 555333223335789999999999863 3322222 2
Q ss_pred HhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCcccccccc
Q 018571 183 GILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDIT 260 (354)
Q Consensus 183 a~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~ 260 (354)
..+|++|++|+++++.+++.... ..+++|+.|+ ..+++.. +.. ...+++|++ |++.+|.++.. +|...
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~-~~~-l~~l~~L~~------L~Ls~n~l~~~-~~~~l 243 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTG-IPF-LGDCSALQH------LDISGNKLSGD-FSRAI 243 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSC-CCB-CTTCCSCCE------EECCSSCCCSC-HHHHT
T ss_pred hccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCC-Ccc-cccCCCCCE------EECcCCcCCCc-ccHHH
Confidence 45799999999998876654332 5678999987 3334321 112 568999999 99999996532 22223
Q ss_pred CCCCccccccc
Q 018571 261 LDDPFVNDIDP 271 (354)
Q Consensus 261 ~~~~~v~~~~~ 271 (354)
...+.++.++.
T Consensus 244 ~~l~~L~~L~L 254 (768)
T 3rgz_A 244 STCTELKLLNI 254 (768)
T ss_dssp TTCSSCCEEEC
T ss_pred hcCCCCCEEEC
Confidence 34444554443
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.45 E-value=2.5e-05 Score=74.23 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=88.8
Q ss_pred CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L 189 (354)
++|++|++++| .+++..-..+. .+++|+.|++ .++...-..+ ..+++|++|+++++. ++... ..+...+++|
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L 224 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLILHMKQ-HILLL-EIFVDVTSSV 224 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSC-STTHH-HHHHHHTTTE
T ss_pred CCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCHHHH-hccccCCeecCCCCc-cccch-hhhhhhcccc
Confidence 78888888887 55544333333 3788888888 3332211223 357889999998875 33322 2334458899
Q ss_pred cEeeCCCccccchhh----hhccCccccccc--cCCCCHHHHHHH---HhcCCcceecCCCCceeecCCCCCcccccccc
Q 018571 190 NDVEGDSWEELVNTD----IGHGAQSLRWFV--WPNIDKDSIEMM---STECPRIIVNPKPSPFGFRGFEVPREAFPDIT 260 (354)
Q Consensus 190 ~~L~ls~~~~td~~~----i~~~~~~L~~L~--C~~ITD~~l~~L---~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~ 260 (354)
+.|++++..+.+... ....+..++.++ ...+++.++..+ ...+++|+. |++.+|.++ .+|.-.
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~------L~Ls~N~l~--~i~~~~ 296 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE------LEFSRNQLK--SVPDGI 296 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE------EECCSSCCC--CCCTTT
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE------EECCCCCCC--ccCHHH
Confidence 999988776654321 123345566555 557888876665 468999999 999999865 333322
Q ss_pred -CCCCcccccc
Q 018571 261 -LDDPFVNDID 270 (354)
Q Consensus 261 -~~~~~v~~~~ 270 (354)
...+.++.++
T Consensus 297 ~~~l~~L~~L~ 307 (353)
T 2z80_A 297 FDRLTSLQKIW 307 (353)
T ss_dssp TTTCTTCCEEE
T ss_pred HhcCCCCCEEE
Confidence 3344555443
No 71
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.44 E-value=4.8e-06 Score=84.58 Aligned_cols=130 Identities=12% Similarity=-0.012 Sum_probs=69.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|++++|.+++..-......+++|+.|++ .++...-..+ .++++|++|++++|. +++..+.....++++|+
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLT 476 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCE-EGGGEECSCCTTCTTCC
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh-cCCCCCCEEECCCCc-CCCcchHHhhccCCCCC
Confidence 678888888875444322122234777777777 3332111112 357777777777763 22211111223467777
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
.|+++++.+++... .-..+++|+.|+ ..++++.. ......+++|+. +++.+|.++
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~------L~l~~N~l~ 534 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLST------LDCSFNRIE 534 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCE------EECTTSCCC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC-HHHccCCCcCCE------EECCCCcCc
Confidence 77777766554321 124456677666 22444321 112245677777 777777643
No 72
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.42 E-value=1.3e-05 Score=80.79 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=62.5
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eec---HHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RIT---AAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP 187 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~IT---d~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp 187 (354)
+++++|||++++|+.-.-..+. .+++|+.||| .|+ +.. + .++++|++|+|+++. ++.-.-..+ .+++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~---f-~~L~~L~~L~Ls~N~-l~~l~~~~f-~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGA---Y-QSLSHLSTLILTGNP-IQSLALGAF-SGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTT---T-TTCTTCCEEECTTCC-CCEECGGGG-TTCT
T ss_pred cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCCcCCCcChhH---h-cCCCCCCEEEccCCc-CCCCCHHHh-cCCC
Confidence 4567777777655532212222 3677777777 222 221 1 356677777777663 221111111 3466
Q ss_pred CCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 188 KLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 188 ~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+|++|+++++.++.... .-..+++|++|+ ...++...+......+++|+. |++.++.+
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~------L~L~~N~l 185 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH------LDLSSNKI 185 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE------EECCSSCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh------hcccCccc
Confidence 77777776665443211 123456666665 223332222233455666776 77766663
No 73
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.42 E-value=3e-05 Score=66.66 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=72.8
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcH-HHHHHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNH-AARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD-~sL~~La~~cp~L 189 (354)
++|+.|+|++|.+++. ..+ ..+++|+.|+| .|+.-. ..+..++++|++|+++++.- ++ ..+..++ ++++|
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~-~l~~L 115 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGF-PLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSL-VELGDLDPLA-SLKSL 115 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCC-CCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCC-CCGGGGGGGG-GCTTC
T ss_pred CCCCEEECCCCCCCcc--ccc-ccCCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCCcC-CcchhhHhhh-cCCCC
Confidence 5899999999988763 333 34889999999 444211 12235789999999998853 33 2223344 58999
Q ss_pred cEeeCCCccccchhh----hhccCccccccccCCCCHHHHHHH
Q 018571 190 NDVEGDSWEELVNTD----IGHGAQSLRWFVWPNIDKDSIEMM 228 (354)
Q Consensus 190 ~~L~ls~~~~td~~~----i~~~~~~L~~L~C~~ITD~~l~~L 228 (354)
++|++++..+++... +...+++|+.|+....+.......
T Consensus 116 ~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~ 158 (176)
T 1a9n_A 116 TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158 (176)
T ss_dssp CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHH
T ss_pred CEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHHHH
Confidence 999999887765332 245678899998555555444433
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.42 E-value=1.2e-05 Score=85.86 Aligned_cols=13 Identities=23% Similarity=-0.128 Sum_probs=6.8
Q ss_pred cCCCCCEEEecCC
Q 018571 159 HCHSLETLRCGGS 171 (354)
Q Consensus 159 ~Cp~Le~L~L~gC 171 (354)
++++|++|+|++|
T Consensus 95 ~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 95 GLFHLFELRLYFC 107 (844)
T ss_dssp SCSSCCCEECTTC
T ss_pred CCcccCEeeCcCC
Confidence 4555555555554
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.41 E-value=3.1e-06 Score=84.98 Aligned_cols=32 Identities=34% Similarity=0.279 Sum_probs=15.5
Q ss_pred CCccEEEeecCCCCHHH--HHHHHHhCCCCcEEEE
Q 018571 114 SSWEILDISGSDVSDFG--LVKVAQMCKSLKAVDI 146 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~g--L~~la~~C~~L~~LdL 146 (354)
++|+.|+|++|.++..+ -..+ ..|++|+.|++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~l 380 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSD-FGTTSLKYLDL 380 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHH-HTCSCCCEEEC
T ss_pred CCCCEEeCcCCccCccccccccc-cccCccCEEEC
Confidence 45566666665544322 1112 23556666655
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.40 E-value=1e-05 Score=73.45 Aligned_cols=127 Identities=9% Similarity=0.039 Sum_probs=62.6
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++..-..+ ..+++|+.|+| .++..... ...++++|++|+|+++. ++.-.- .+-..+++|+
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~ 134 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQ-LKSLPS-GVFDRLTKLK 134 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred ccCCEEECCCCcCCccCHhHh-ccCCcCCEEECCCCcccccChh-HhcccCCCCEEEcCCCc-CCCcCh-hHhccCCccc
Confidence 667777777765554222222 23667777776 34321111 12356677777777652 221100 1112466777
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
.|++++..+..... ....+++|+.|+ ...++...- .....+++|+. +++.++++
T Consensus 135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~l~~N~~ 191 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQT------ITLFGNQF 191 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE------EECCSCCB
T ss_pred EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCE------EEeeCCce
Confidence 77776665543221 123455666665 223331111 12245666777 77777664
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.38 E-value=2.4e-05 Score=80.70 Aligned_cols=131 Identities=11% Similarity=0.086 Sum_probs=79.7
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
+.. ++|++|+|++|.++...-..+.. |++|+.|+| .++.-.-..+ .+|++|++|++++|. +++..-..+ .++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-~~l 120 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTF-AFCTNLTELHLMSNS-IQKIKNNPF-VKQ 120 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSC-CCCCCSCTT-TTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccCccChhhh-ccCCCCCEEECCCCc-cCccChhHc-ccc
Confidence 444 78888888888666544344444 888888888 4442211123 368888999888874 221110122 357
Q ss_pred CCCcEeeCCCccccchhhh-hccCccccccc--cCCCCHHHHHHHH-hcCCcceecCCCCceeecCCCC
Q 018571 187 PKLNDVEGDSWEELVNTDI-GHGAQSLRWFV--WPNIDKDSIEMMS-TECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 187 p~L~~L~ls~~~~td~~~i-~~~~~~L~~L~--C~~ITD~~l~~L~-~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
++|++|+++++..+....- -..+++|+.|+ ...++...-..+. ..+++|+. +++.+|.+
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~------L~L~~n~l 183 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK------LELSSNQI 183 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE------EECTTCCC
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE------EECCCCcc
Confidence 8888888888766543211 13567888887 2334433223332 35788888 88888874
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.38 E-value=7e-06 Score=75.43 Aligned_cols=127 Identities=8% Similarity=0.009 Sum_probs=66.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.++......+ ..+++|+.|+| .++...-..+ .++++|++|+++++. +++..-..+ ..+++|+
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~ 160 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVF-DQLVNLAELRLDRNQLKSLPPRVF-DSLTKLTYLSLGYNE-LQSLPKGVF-DKLTSLK 160 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTT-TTCSSCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCC
T ss_pred CCCCEEECCCCcCCcCCHhHc-ccccCCCEEECCCCccCeeCHHHh-CcCcCCCEEECCCCc-CCccCHhHc-cCCcccc
Confidence 677777777775553322222 23677777777 3332221112 356777777777763 221111111 2467777
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+|++++..+++... ....+++|+.|+ ...++.-. ......+++|+. +++.++++
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~------L~l~~N~~ 217 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKM------LQLQENPW 217 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCE------EECCSSCB
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCE------EEecCCCe
Confidence 77777665544322 123456666665 22343211 112345677777 77777764
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.37 E-value=1e-05 Score=81.01 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=79.5
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++..-..+. .+++|++|+| .++..++.....++++|++|++++|..+++.....+ .++++|+
T Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~ 151 (549)
T 2z81_A 74 GSLEHLDLSDNHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLN 151 (549)
T ss_dssp TTCCEEECTTSCCCSCCHHHHT-TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEE
T ss_pred ccCCEEECCCCccCccCHHHhc-cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh-hcccccC
Confidence 7888888888876655444444 3888888888 555332222335688888888888764443211123 2478888
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 253 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~ 253 (354)
+|+++++....... .-..+++|+.|+ ...++... ..+...+++|+. +++.+|.++.
T Consensus 152 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~------L~L~~n~l~~ 210 (549)
T 2z81_A 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL-EIFADILSSVRY------LELRDTNLAR 210 (549)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH-HHHHHSTTTBSE------EEEESCBCTT
T ss_pred eeeccCCcccccChhhhhccccCceEecccCcccccc-hhhHhhcccccE------EEccCCcccc
Confidence 88887666544211 113456677776 23333222 234456888888 8888887544
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.37 E-value=6.9e-06 Score=74.65 Aligned_cols=127 Identities=8% Similarity=-0.004 Sum_probs=71.8
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++++.|+|++++++...-..+. .+++|+.|+| .++...-..+ .++++|++|+++++. ++..... .-.++++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQ-LASLPLG-VFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSC-CCCCCTT-TTTTCTTCC
T ss_pred CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHh-ccCCcCCEEECCCCc-ccccChh-HhcccCCCC
Confidence 5678888888765544333333 3788888888 4443211112 357788888888764 2211111 123477888
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+|++++..++.... ....+++|+.|+ ..+++.-.- .....+++|+. |++.++.+
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~------L~L~~N~l 167 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQT------LSLSTNQL 167 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE------EECCSSCC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCE------EECCCCcC
Confidence 88887776553221 124466777776 334442111 12346677888 88888774
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.34 E-value=4.8e-06 Score=74.89 Aligned_cols=13 Identities=15% Similarity=-0.067 Sum_probs=6.7
Q ss_pred cCCCCCEEEecCC
Q 018571 159 HCHSLETLRCGGS 171 (354)
Q Consensus 159 ~Cp~Le~L~L~gC 171 (354)
+|++|++|+++++
T Consensus 103 ~l~~L~~L~l~~n 115 (239)
T 2xwt_C 103 ELPLLKFLGIFNT 115 (239)
T ss_dssp CCTTCCEEEEEEE
T ss_pred CCCCCCEEeCCCC
Confidence 3455555555544
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.34 E-value=3.3e-05 Score=72.64 Aligned_cols=125 Identities=14% Similarity=0.034 Sum_probs=72.3
Q ss_pred CCccEEEeecCCCCHHHHH-HHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDFGLV-KVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~-~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L 189 (354)
++|+.|++++|.+++.|+. .....+++|+.|++ .++.-. . ...++|++|++++|. +++.....+. .+++|
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~--~~~~~L~~L~l~~n~-l~~~~~~~~~-~l~~L 218 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--Q--GLPPSLTELHLDGNK-ITKVDAASLK-GLNNL 218 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--S--SCCTTCSEEECTTSC-CCEECTGGGT-TCTTC
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC--c--cccccCCEEECCCCc-CCccCHHHhc-CCCCC
Confidence 5666666666655543322 11233666666666 332100 0 012567777777664 3322222233 47899
Q ss_pred cEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 190 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 190 ~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
+.|++++..+.+... .-..+++|+.|+ ...++ .+..-...+++|+. +++.+|.++
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~------L~l~~N~i~ 276 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQV------VYLHNNNIS 276 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCE------EECCSSCCC
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCE------EECCCCcCC
Confidence 999998887665432 234578899887 33455 22222467899999 999999954
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.34 E-value=1.1e-05 Score=81.29 Aligned_cols=139 Identities=9% Similarity=-0.074 Sum_probs=90.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++... ..+++|+.|+| .++...-..+ .++++|++|+|+++. +++.....+...+++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLE 172 (487)
T ss_dssp TTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCC-CCCcChHHHhhhCCccc
Confidence 778888888886654332 23688888888 5554322222 368999999999874 44433445566789999
Q ss_pred EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCccccccccCCCCcccc
Q 018571 191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVND 268 (354)
Q Consensus 191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~al~~v~~~~~~v~~ 268 (354)
+|+++++.+++.... ..+++|+.|+ ...++.-.- -...+++|+. |++.+|.++ .+|......+.+..
T Consensus 173 ~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~------L~Ls~N~l~--~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTW------ISLRNNKLV--LIEKALRFSQNLEH 241 (487)
T ss_dssp EEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECG--GGGGGTTCSE------EECTTSCCC--EECTTCCCCTTCCE
T ss_pred EEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCH--hHcCCCCccE------EEecCCcCc--ccchhhccCCCCCE
Confidence 999998877654322 2478888887 445553211 1457899999 999999965 24444444444444
Q ss_pred c
Q 018571 269 I 269 (354)
Q Consensus 269 ~ 269 (354)
+
T Consensus 242 L 242 (487)
T 3oja_A 242 F 242 (487)
T ss_dssp E
T ss_pred E
Confidence 3
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.33 E-value=8.2e-06 Score=71.79 Aligned_cols=127 Identities=8% Similarity=-0.024 Sum_probs=75.3
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
+++++|+|+++++++..-..+ ..+++|++|+| .++.-.- ....++++|++|+++++. ++...- ..-..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVF-DELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred CCCcEEEcCCCccCcCChhhh-cccccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCc-CCccCH-hHhcCccCCC
Confidence 578888888886664322222 34888888888 4442111 122467888888888874 221100 1123578888
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+|++++..+..... ....+++|+.|+ ...+++.. ......+++|+. +++.++++
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~------L~l~~N~~ 160 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQY------IWLHDNPW 160 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCE------EECCSCCB
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccE------EEecCCCe
Confidence 88888776654322 124567777776 33344211 122456788888 88888874
No 85
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.33 E-value=2.7e-05 Score=68.30 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=56.6
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++|.+++ +..+...+++|+.|+| .+++ +..+. ++++|++|+++++.-.+-..+..+. .+++|+
T Consensus 70 ~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~--l~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~-~l~~L~ 143 (198)
T 1ds9_A 70 ENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--LSGIE-KLVNLRVLYMSNNKITNWGEIDKLA-ALDKLE 143 (198)
T ss_dssp TTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC--HHHHH-HHHHSSEEEESEEECCCHHHHHHHT-TTTTCS
T ss_pred CCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc--CCccc-cCCCCCEEECCCCcCCchhHHHHHh-cCCCCC
Confidence 677777777775442 2233334567777777 5554 23333 4677777777766432222233344 367777
Q ss_pred EeeCCCccccchh-----------hhhccCccccccccCCCCH
Q 018571 191 DVEGDSWEELVNT-----------DIGHGAQSLRWFVWPNIDK 222 (354)
Q Consensus 191 ~L~ls~~~~td~~-----------~i~~~~~~L~~L~C~~ITD 222 (354)
+|+++++...+.. .+-..+++|+.|+...|++
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~ 186 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV 186 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTT
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCH
Confidence 7777766544331 0124556777776444443
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.32 E-value=7.5e-06 Score=83.16 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=14.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI 146 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL 146 (354)
++|++|+|++|.++. +-.-...+++|+.|++
T Consensus 278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l 308 (606)
T 3t6q_A 278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVL 308 (606)
T ss_dssp TTCSEEECTTSCCSC--CCSSCCSCTTCCEEEC
T ss_pred cCCCEEeccCCccCC--CChhhcccccCCEEEC
Confidence 556666666654431 1000123555555555
No 87
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.31 E-value=1.9e-05 Score=75.99 Aligned_cols=124 Identities=11% Similarity=0.042 Sum_probs=70.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|++++|.++.... ..+++|+.|++ .+++. .. ..++++|++|+++++. +++.....+ ..+++|+
T Consensus 205 ~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~ 275 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQRLE 275 (390)
T ss_dssp SSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSC-CCEEESGGG-TTCSSCC
T ss_pred CcceEEECCCCeeeeccc----cccccccEEECCCCCCccc--HH-HcCCCCccEEECCCCc-CCCcChhHc-cccccCC
Confidence 456666776665443211 22467888888 55542 22 3467888888888774 332211122 2467888
Q ss_pred EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCcc
Q 018571 191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPRE 254 (354)
Q Consensus 191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~~ 254 (354)
+|+++++.+++.......+++|+.|+ ...++. +..-...+++|+. |++.+|+++..
T Consensus 276 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~------L~L~~N~i~~~ 333 (390)
T 3o6n_A 276 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLEN------LYLDHNSIVTL 333 (390)
T ss_dssp EEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSE------EECCSSCCCCC
T ss_pred EEECCCCcCcccCcccCCCCCCCEEECCCCccee--cCccccccCcCCE------EECCCCcccee
Confidence 88887776655433334566777776 223442 1111245677777 88888775443
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.30 E-value=1.4e-05 Score=82.44 Aligned_cols=128 Identities=7% Similarity=0.057 Sum_probs=86.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
+++++|+|+++.++...-..+.. |++|++|+| .++...-..+ .+|++|++|++++|. ++.-.-..+ .+|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQHNE-LSQLSDKTF-AFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSCCCCCCTTHH-HHCTTCCEEECCSSC-CCCCCTTTT-TTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCccCccCHHHH-hcccCcCEEECCCCc-cCccChhhh-ccCCCCC
Confidence 68999999999776544333444 899999999 4554332334 369999999999984 332111123 3589999
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
+|+++++.+.+... .-..+++|+.|+ ...++...... ...|++|+. |++.+|.++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~------L~L~~n~l~ 158 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQE------LLLSNNKIQ 158 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCE------EECCSSCCC
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCE------EEccCCccc
Confidence 99999887654321 124678899987 23344322111 257899999 999999853
No 89
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.28 E-value=2e-05 Score=75.85 Aligned_cols=124 Identities=12% Similarity=0.052 Sum_probs=59.5
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++.....+.. +++|+.|+| .++...-..+ .++++|++|++++|. +++-. ..+-.++++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~L~ 144 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERND-LSSLP-RGIFHNTPKLT 144 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred ccCcEEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHh-cCCCCCCEEECCCCc-cCcCC-HHHhcCCCCCc
Confidence 56666666666555433223332 666666666 3332211112 346666666666653 22100 01113466666
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+|+++++.+.+... .-..+++|+.|+ ...+++.. ...+++|+. +++.++.+
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~------L~l~~n~l 198 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH------ANVSYNLL 198 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSE------EECCSSCC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccce------eecccccc
Confidence 66666655443221 123455666665 23343322 234566666 66665553
No 90
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.27 E-value=8.3e-05 Score=80.66 Aligned_cols=132 Identities=11% Similarity=0.031 Sum_probs=73.0
Q ss_pred hhc-CCccEEEeecCCCCHHH----------------HH-HH-HHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEe
Q 018571 111 LAD-SSWEILDISGSDVSDFG----------------LV-KV-AQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRC 168 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~g----------------L~-~l-a~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L 168 (354)
+.. ++|+.|+|++|.++..+ +- .+ ...+++|+.|+| .++.. +-....++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEEC
Confidence 444 78888999888777621 11 12 125888888888 22211 1112236788888888
Q ss_pred cCCCCCcH----HHHHHHH---hcCCCCcEeeCCCccccchhh--hhccCccccccc--cCCCCHHHHHHHHhcCCccee
Q 018571 169 GGSPRSNH----AARRCLG---ILKPKLNDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIV 237 (354)
Q Consensus 169 ~gC~~ItD----~sL~~La---~~cp~L~~L~ls~~~~td~~~--i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~ 237 (354)
++|..++. .++..+. ..+|+|++|+++++....-.. .-..+++|+.|+ ..+++ .+. ....+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceE
Confidence 88764554 2233332 345688888887766552211 123455666665 22333 222 2345566666
Q ss_pred cCCCCceeecCCCCC
Q 018571 238 NPKPSPFGFRGFEVP 252 (354)
Q Consensus 238 ~p~~~~L~l~gC~~s 252 (354)
|++.+|.++
T Consensus 600 ------L~Ls~N~l~ 608 (876)
T 4ecn_A 600 ------LKLDYNQIE 608 (876)
T ss_dssp ------EECCSSCCS
T ss_pred ------EECcCCccc
Confidence 666666543
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.27 E-value=1.2e-05 Score=72.58 Aligned_cols=128 Identities=9% Similarity=-0.068 Sum_probs=77.7
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++|.|+...-..+ ..+++|+.|+| .|+.-.- ....++++|++|+|+++. ++.-.- .....+++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTNQ-LTVLPS-AVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCCc-CCccCh-hHhCcchhhC
Confidence 788999999986664322223 34788999998 4432111 122468889999998873 332111 1123578899
Q ss_pred EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
.|++++..+.........+++|+.|+ ..+++.-.- .....+++|+. +++.|.++.
T Consensus 116 ~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~l~~N~~~ 172 (229)
T 3e6j_A 116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTH------AYLFGNPWD 172 (229)
T ss_dssp EEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCE------EECTTSCBC
T ss_pred eEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCE------EEeeCCCcc
Confidence 99888876654322225667788776 333442111 23456788888 899888853
No 92
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.27 E-value=1.1e-05 Score=79.25 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=71.2
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
|.+ ++|++|+|++|.+++.....+. .+++|+.|+| .++.-.-.. ..++++|++|+|+++. ++.-.-. .-.++
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l 159 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFN-GLANLNTLELFDNRLTTIPNGA-FVYLSKLKELWLRNNP-IESIPSY-AFNRI 159 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGT-TCSSCCEEECCSSCCSSCCTTT-SCSCSSCCEEECCSCC-CCEECTT-TTTTC
T ss_pred hhCCCCCCEEECCCCcCCccChhhcc-CCccCCEEECCCCcCCeeCHhH-hhccccCceeeCCCCc-ccccCHH-HhhhC
Confidence 444 6777777777766544333333 3777777777 444211111 2357778888887764 2211001 12347
Q ss_pred CCCcEeeCCCccccch-h-hhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 187 PKLNDVEGDSWEELVN-T-DIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 187 p~L~~L~ls~~~~td~-~-~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
++|++|+++++..... . ....++++|+.|+ ..++++- .. ...+++|+. |++.+|.++
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~------L~Ls~N~l~ 220 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PN-LTPLIKLDE------LDLSGNHLS 220 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CC-CTTCSSCCE------EECTTSCCC
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cc-cCCCcccCE------EECCCCccC
Confidence 7888887776432221 1 1124567788776 2233321 11 356778888 899888754
No 93
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.26 E-value=1.1e-05 Score=81.88 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=13.5
Q ss_pred CccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDI 146 (354)
Q Consensus 115 ~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL 146 (354)
+++.|++++|.+++..-..+. .+++|+.|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l 285 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFH-CFSGLQELDL 285 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTT-TCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhc-cccCCCEEec
Confidence 455555555543332222222 2455555555
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.26 E-value=1.5e-05 Score=73.22 Aligned_cols=128 Identities=10% Similarity=0.043 Sum_probs=75.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.++...-. +...+++|+.|+| .++.-... ...++++|++|+++++. ++...-..+ ..+++|+
T Consensus 61 ~~L~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~ 136 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAG-IFKELKNLETLWVTDNKLQALPIG-VFDQLVNLAELRLDRNQ-LKSLPPRVF-DSLTKLT 136 (270)
T ss_dssp TTCCEEECCSSCCSCCCTT-TTSSCTTCCEEECCSSCCCCCCTT-TTTTCSSCCEEECCSSC-CCCCCTTTT-TTCTTCC
T ss_pred CCCCEEECCCCccCeeChh-hhcCCCCCCEEECCCCcCCcCCHh-HcccccCCCEEECCCCc-cCeeCHHHh-CcCcCCC
Confidence 7888888888866532211 2234788888888 44432211 22467888888888764 221111112 3578888
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
+|++++..+.+... ....+++|+.|+ ...++...- .....+++|+. |++.++.++
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~------L~L~~N~l~ 194 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKT------LKLDNNQLK 194 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE------EECCSSCCS
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCE------EECCCCcCC
Confidence 88888876654322 124567788776 223433211 12346788888 888888743
No 95
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.26 E-value=7.2e-05 Score=74.64 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=43.2
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++.. + ..+++|+.|++ .++.- .+ .+|++|++|++++|..+++.. + ..+++|+
T Consensus 106 ~~L~~L~L~~N~l~~l~---~-~~l~~L~~L~l~~N~l~~l---~l-~~l~~L~~L~l~~n~~~~~~~---~-~~l~~L~ 173 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD---V-SQNPLLTYLNCARNTLTEI---DV-SHNTQLTELDCHLNKKITKLD---V-TPQTQLT 173 (457)
T ss_dssp TTCCEEECCSSCCSCCC---C-TTCTTCCEEECTTSCCSCC---CC-TTCTTCCEEECTTCSCCCCCC---C-TTCTTCC
T ss_pred CcCCEEECCCCcCCeec---C-CCCCcCCEEECCCCcccee---cc-ccCCcCCEEECCCCCcccccc---c-ccCCcCC
Confidence 67777777777555422 2 33677777777 44431 12 356777777777765444431 2 2356666
Q ss_pred EeeCCCccccc
Q 018571 191 DVEGDSWEELV 201 (354)
Q Consensus 191 ~L~ls~~~~td 201 (354)
+|+++++.+++
T Consensus 174 ~L~ls~n~l~~ 184 (457)
T 3bz5_A 174 TLDCSFNKITE 184 (457)
T ss_dssp EEECCSSCCCC
T ss_pred EEECCCCccce
Confidence 66666655443
No 96
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.26 E-value=3e-05 Score=76.56 Aligned_cols=99 Identities=14% Similarity=0.053 Sum_probs=43.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.+++..-..+. .+++|+.|+| .++.-.-..+ .++++|++|+|+++.-.+- .-..+ ..+++|+
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~-~~l~~L~ 131 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVF-TGLSNLTKLDISENKIVIL-LDYMF-QDLYNLK 131 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTTSS-TTCTTCCEEECTTSCCCEE-CTTTT-TTCTTCC
T ss_pred CCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcccc-cCCCCCCEEECCCCccccC-ChhHc-cccccCC
Confidence 5566666666655443222222 2566666666 3332111111 2456666666665532110 00011 2355666
Q ss_pred EeeCCCccccchhh-hhccCccccccc
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV 216 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~ 216 (354)
+|++++..+..... .-.++++|+.|+
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred EEECCCCccceeChhhccCCCCCCEEE
Confidence 66665544433211 112345555554
No 97
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.22 E-value=2.3e-05 Score=80.35 Aligned_cols=84 Identities=7% Similarity=-0.034 Sum_probs=42.0
Q ss_pred cCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcce
Q 018571 159 HCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRII 236 (354)
Q Consensus 159 ~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~ 236 (354)
++++|++|+|++|.- ++.....++ .+++|+.|+++++.++........+++|+.|+ ...++. +..-...+++|+
T Consensus 252 ~l~~L~~L~Ls~N~l-~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~ 327 (597)
T 3oja_B 252 NYPGLVEVDLSYNEL-EKIMYHPFV-KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLE 327 (597)
T ss_dssp GCTTCSEEECCSSCC-CEEESGGGT-TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCS
T ss_pred cCCCCCEEECCCCcc-CCCCHHHhc-CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc--cCcccccCCCCC
Confidence 455566666655532 111111122 35566666665555444322234466777776 334441 221224567777
Q ss_pred ecCCCCceeecCCCCC
Q 018571 237 VNPKPSPFGFRGFEVP 252 (354)
Q Consensus 237 ~~p~~~~L~l~gC~~s 252 (354)
. |++.+|.++
T Consensus 328 ~------L~L~~N~l~ 337 (597)
T 3oja_B 328 N------LYLDHNSIV 337 (597)
T ss_dssp E------EECCSSCCC
T ss_pred E------EECCCCCCC
Confidence 7 777777754
No 98
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.21 E-value=5.4e-05 Score=74.72 Aligned_cols=127 Identities=12% Similarity=-0.006 Sum_probs=61.3
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCC-----------------
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPR----------------- 173 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~----------------- 173 (354)
++|++|+|++|.+++..-..+.. +++|+.|+| .++...-..+ ..+++|++|++++|..
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSH-LHGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTT-CTTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CCCCEEECCCCcCcccChhHhcc-cCCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccccEE
Confidence 67777777777655443333333 777777777 2221110111 2455555555554432
Q ss_pred ------CcHHHHHHHHhcCCCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCce
Q 018571 174 ------SNHAARRCLGILKPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPF 244 (354)
Q Consensus 174 ------ItD~sL~~La~~cp~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L 244 (354)
++......+ .++++|+.|++++..+++... .-..+++|+.|+ ..++++.... ....|++|+. |
T Consensus 230 ~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~------L 301 (477)
T 2id5_A 230 SITHCNLTAVPYLAV-RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRV------L 301 (477)
T ss_dssp EEESSCCCSCCHHHH-TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT-TBTTCTTCCE------E
T ss_pred ECcCCcccccCHHHh-cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH-HhcCcccCCE------E
Confidence 221111122 346777777777765543221 123445566555 2233321111 1235566666 6
Q ss_pred eecCCC
Q 018571 245 GFRGFE 250 (354)
Q Consensus 245 ~l~gC~ 250 (354)
++.+|.
T Consensus 302 ~L~~N~ 307 (477)
T 2id5_A 302 NVSGNQ 307 (477)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 666665
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.20 E-value=4.8e-05 Score=77.02 Aligned_cols=54 Identities=15% Similarity=0.080 Sum_probs=22.3
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS 171 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC 171 (354)
.++++|++++|.+++..+ ...+++|+.|++ .+++.....+ .++++|++|+++++
T Consensus 331 ~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N 387 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRN 387 (562)
T ss_dssp CCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSS
T ss_pred CcceEEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCC
Confidence 445555555553332111 023455555555 3333111111 23455555555544
No 100
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.16 E-value=1.3e-05 Score=78.91 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=62.8
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE-------eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI-------RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL-------~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
++|++|+|++|.++...-..+ ..+++|+.|+| .+.+. ...++++|++|++++|.-.+- ..+ ..+
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~----~~~~l~~L~~L~L~~n~l~~~---~~~-~~l 206 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISEG----AFEGLSNLRYLNLAMCNLREI---PNL-TPL 206 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTT----TTTTCSSCCEEECTTSCCSSC---CCC-TTC
T ss_pred ccCceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeCcc----hhhcccccCeecCCCCcCccc---ccc-CCC
Confidence 555666666554442221112 22556666665 12211 113466666666666532111 111 346
Q ss_pred CCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 187 PKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 187 p~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
++|+.|++++..+++... ...++++|+.|+ ..++++.... ....+++|+. |++.++.++
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~------L~L~~N~l~ 268 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVE------INLAHNNLT 268 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-SSTTCTTCCE------EECTTSCCC
T ss_pred cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh-hhcCCCCCCE------EECCCCCCC
Confidence 677777777665554321 124566777776 3334432211 2346788888 999998843
No 101
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.13 E-value=3.9e-05 Score=78.64 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=77.7
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++|.+++. ..+ ..+++|+.|+| .++......+ .++++|++|+|++|.-.+ +......+|.|+
T Consensus 232 ~~L~~L~L~~n~l~~~--~~l-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~ 304 (597)
T 3oja_B 232 VELTILKLQHNNLTDT--AWL-LNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVA---LNLYGQPIPTLK 304 (597)
T ss_dssp SCCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSCCCE---EECSSSCCTTCC
T ss_pred CCCCEEECCCCCCCCC--hhh-ccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCCCCC---CCcccccCCCCc
Confidence 4677888888876653 233 34899999999 4443222223 368899999999875332 112224578999
Q ss_pred EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 191 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 191 ~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
.|+++++.++........+++|+.|+ ...++... ...++.|+. |++.|+++.
T Consensus 305 ~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~------L~l~~N~~~ 358 (597)
T 3oja_B 305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKN------LTLSHNDWD 358 (597)
T ss_dssp EEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSE------EECCSSCEE
T ss_pred EEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCE------EEeeCCCCC
Confidence 99998887664322224567788877 33344322 456788888 888888843
No 102
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.13 E-value=1.7e-05 Score=78.28 Aligned_cols=59 Identities=10% Similarity=-0.031 Sum_probs=28.4
Q ss_pred CCCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 186 KPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 186 cp~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+++|+.|++++..+++... .-.++++|+.|+ ..+++..... ....+++|+. |++.++.+
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~------L~L~~N~l 278 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLVE------LNLAHNNL 278 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCE------EECCSSCC
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH-HhcCCCCCCE------EECCCCcC
Confidence 4455555555544433211 123455666665 2233322111 1245677777 77777764
No 103
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.10 E-value=0.00018 Score=71.76 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=35.0
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|++++.. + ..+++|++|++ .++.-. + .++++|++|+++++. +++- .+ ..+++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~~---~-~~l~~L~~L~Ls~N~l~~~~---~-~~l~~L~~L~L~~N~-l~~l---~~-~~l~~L~ 130 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD---L-SQNTNLTYLACDSNKLTNLD---V-TPLTKLTYLNCDTNK-LTKL---DV-SQNPLLT 130 (457)
T ss_dssp TTCSEEECCSSCCSCCC---C-TTCTTCSEEECCSSCCSCCC---C-TTCTTCCEEECCSSC-CSCC---CC-TTCTTCC
T ss_pred CCCCEEEccCCcCCeEc---c-ccCCCCCEEECcCCCCceee---c-CCCCcCCEEECCCCc-CCee---cC-CCCCcCC
Confidence 55666666665444421 2 23556666666 333211 2 245566666666553 2221 11 2355555
Q ss_pred EeeCCCcccc
Q 018571 191 DVEGDSWEEL 200 (354)
Q Consensus 191 ~L~ls~~~~t 200 (354)
+|+++++.++
T Consensus 131 ~L~l~~N~l~ 140 (457)
T 3bz5_A 131 YLNCARNTLT 140 (457)
T ss_dssp EEECTTSCCS
T ss_pred EEECCCCccc
Confidence 5555554433
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.08 E-value=0.00015 Score=73.31 Aligned_cols=127 Identities=15% Similarity=0.027 Sum_probs=84.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHH-HHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAA-GVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~-gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L 189 (354)
++|++|+|++|.+++.....+ ..+++|+.|+| .++.- .+.....++++|++|+++++.-.+.. -......+++|
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~l~~L 430 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA-YDRTCAWAESI 430 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC-SSCCCCCCTTC
T ss_pred CCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc-ChhhhcCcccC
Confidence 889999999998887444334 34899999999 56541 22233357899999999988632200 00123357899
Q ss_pred cEeeCCCccccchhhhhccC-ccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 190 NDVEGDSWEELVNTDIGHGA-QSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 190 ~~L~ls~~~~td~~~i~~~~-~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
+.|+++++.+++.. ..+. ++|+.|+ ..+++ .+..-...+++|+. +++.++.++
T Consensus 431 ~~L~l~~n~l~~~~--~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~------L~L~~N~l~ 486 (562)
T 3a79_B 431 LVLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQE------LNVASNQLK 486 (562)
T ss_dssp CEEECCSSCCCGGG--GSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSE------EECCSSCCC
T ss_pred CEEECCCCCCCcch--hhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCE------EECCCCCCC
Confidence 99999988776432 2233 6888887 33555 22222237889999 999999864
No 105
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.06 E-value=3.6e-05 Score=71.99 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=6.1
Q ss_pred cCCCCCEEEecCC
Q 018571 159 HCHSLETLRCGGS 171 (354)
Q Consensus 159 ~Cp~Le~L~L~gC 171 (354)
++++|++|+|+++
T Consensus 122 ~l~~L~~L~L~~N 134 (290)
T 1p9a_G 122 GLGELQELYLKGN 134 (290)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCCCCCEEECCCC
Confidence 3444445544444
No 106
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.03 E-value=0.00025 Score=76.92 Aligned_cols=128 Identities=13% Similarity=0.000 Sum_probs=79.7
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---e-ecH----HHHHHHH---hcCCCCCEEEecCCCCCcHHHHHHH
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---R-ITA----AGVSEFL---LHCHSLETLRCGGSPRSNHAARRCL 182 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~-ITd----~gl~~La---~~Cp~Le~L~L~gC~~ItD~sL~~L 182 (354)
++|++|+|++|.++..--..+. .+++|+.|+| . ++. .++..+. ..+++|++|+|++|.-..-.....+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 8899999999854432223333 4899999999 4 665 3344443 4567999999998753210001123
Q ss_pred HhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCc-ceecCCCCceeecCCCCC
Q 018571 183 GILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPR-IIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 183 a~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~-L~~~p~~~~L~l~gC~~s 252 (354)
+ ++++|+.|++++..++.-. .-..+++|+.|+ ...++ .+..-...+++ |+. |++.+|.++
T Consensus 570 ~-~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~------L~Ls~N~L~ 632 (876)
T 4ecn_A 570 Q-KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG------LGFSHNKLK 632 (876)
T ss_dssp T-TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE------EECCSSCCC
T ss_pred h-cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCE------EECcCCCCC
Confidence 3 5889999999887665322 224456777776 33344 22222456677 888 888888755
No 107
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.03 E-value=4.1e-05 Score=70.12 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=55.6
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCC--cHHHHHHHHhcCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRS--NHAARRCLGILKPK 188 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~I--tD~sL~~La~~cp~ 188 (354)
++|++|++++|.++...-..+. .+++|+.|++ .+++.++.....++++|++|++++|.-. ....+..+.. ++.
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~ 177 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPL 177 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT-CTT
T ss_pred ccccEEECCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh-ccc
Confidence 5566666665543322111122 2556666665 3333222222234566666666655311 1122222221 233
Q ss_pred Cc-EeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 189 LN-DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 189 L~-~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
|. +|++++..+...........+|+.|+ ...++... ..+...+++|+. +++.+.++
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~------L~l~~N~~ 236 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP-DGIFDRLTSLQK------IWLHTNPW 236 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC-TTTTTTCCSCCE------EECCSSCB
T ss_pred cceeeecCCCcccccCccccCCCcccEEECCCCceeecC-HhHhcccccccE------EEccCCcc
Confidence 32 45555544433221112223566665 22343211 122345677777 77777664
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.99 E-value=0.00013 Score=75.12 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=70.7
Q ss_pred HHHhhcCCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHh
Q 018571 108 IMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGI 184 (354)
Q Consensus 108 L~~la~~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~ 184 (354)
+..+....|+.|+|++|+++. +..+ ..+++|+.|+| .|+ .+-.-..++++|++|+|+++. ++. +..++
T Consensus 435 i~~l~~~~L~~L~Ls~n~l~~--lp~~-~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~l~- 505 (567)
T 1dce_A 435 VLKMEYADVRVLHLAHKDLTV--LCHL-EQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNA-LEN--VDGVA- 505 (567)
T ss_dssp HHHHHHTTCSEEECTTSCCSS--CCCG-GGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCC--CGGGT-
T ss_pred ccccCccCceEEEecCCCCCC--CcCc-cccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCC-CCC--CcccC-
Confidence 333333578889999886664 2233 34788888888 554 221223468889999988774 332 22333
Q ss_pred cCCCCcEeeCCCccccchh--hhhccCccccccc--cCCCCHH--HHHHHHhcCCccee
Q 018571 185 LKPKLNDVEGDSWEELVNT--DIGHGAQSLRWFV--WPNIDKD--SIEMMSTECPRIIV 237 (354)
Q Consensus 185 ~cp~L~~L~ls~~~~td~~--~i~~~~~~L~~L~--C~~ITD~--~l~~L~~~Cp~L~~ 237 (354)
++++|+.|++++..+++.. ..-..+++|+.|+ ...++.. .+..+...+|+|++
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 4788888888877665442 1123456666665 2223221 23344555666666
No 109
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=96.97 E-value=6.8e-05 Score=73.93 Aligned_cols=124 Identities=13% Similarity=0.015 Sum_probs=56.0
Q ss_pred CCccEEEeecC-CCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L 189 (354)
++|+.|+|++| .++......+ ..+++|+.|+| .+++ +..+ ..+++|++|+|+++.- ++..-..+ .++++|
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l-~~~~~~~~-~~l~~L 244 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMCNIKD--MPNL-TPLVGLEELEMSGNHF-PEIRPGSF-HGLSSL 244 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTT-TTCTTCCEEECTTSCCSS--CCCC-TTCTTCCEEECTTSCC-SEECGGGG-TTCTTC
T ss_pred CcccEEeCCCCCCccccChhhc-cCCCCCCEEECCCCcccc--cccc-cccccccEEECcCCcC-cccCcccc-cCccCC
Confidence 45555555554 3332211112 22555666665 2321 1112 2456666666666532 21111112 246677
Q ss_pred cEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 190 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 190 ~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
+.|++++..+.+... .-.++++|+.|+ ..+++.-. ..+...+++|+. +++.++|
T Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~------L~L~~Np 301 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVE------LHLHHNP 301 (452)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCE------EECCSSC
T ss_pred CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC-hHHhccccCCCE------EEccCCC
Confidence 777776665543221 123455666665 22333111 112245666666 6776666
No 110
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.93 E-value=2.4e-05 Score=70.25 Aligned_cols=126 Identities=10% Similarity=-0.043 Sum_probs=81.7
Q ss_pred CCccEEEeec-CCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCC---EEEecCCCCCcHHHHHHHHhcC
Q 018571 114 SSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLE---TLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 114 ~~L~~LdLs~-C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le---~L~L~gC~~ItD~sL~~La~~c 186 (354)
++|++|+|++ +.++...-..+ ..|++|+.|++ .++. +.. ..++++|+ +|+++++..++.-.-..+ ..+
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l 154 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDAL-KELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-QGL 154 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSE-ECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-TTT
T ss_pred cCCcEEECCCCCCeeEcCHHHh-CCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccc-cch
Confidence 8999999999 47774332222 34899999999 4443 222 34788898 999999855554221222 358
Q ss_pred CCCc-EeeCCCccccchhhh-hccCccccccc---cCCCCHHHHHHHHhcC-CcceecCCCCceeecCCCCC
Q 018571 187 PKLN-DVEGDSWEELVNTDI-GHGAQSLRWFV---WPNIDKDSIEMMSTEC-PRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 187 p~L~-~L~ls~~~~td~~~i-~~~~~~L~~L~---C~~ITD~~l~~L~~~C-p~L~~~p~~~~L~l~gC~~s 252 (354)
++|+ .|++++..+...... ... .+|+.|+ +.+++.-.- .....+ ++|+. +++.++.++
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~------L~l~~N~l~ 218 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSL------LDVSQTSVT 218 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSE------EECTTCCCC
T ss_pred hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcE------EECCCCccc
Confidence 9999 999988766542221 222 6788877 434653221 223456 88999 999998853
No 111
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.88 E-value=7.8e-05 Score=77.26 Aligned_cols=89 Identities=6% Similarity=-0.066 Sum_probs=48.1
Q ss_pred hhc-CCccEEEeecCCCCHH-----------H-----HH-HHH-HhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEe
Q 018571 111 LAD-SSWEILDISGSDVSDF-----------G-----LV-KVA-QMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRC 168 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~-----------g-----L~-~la-~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L 168 (354)
+.. ++|++|+|++|.++.. + +- .+. ..+++|+.|+| .++..--..+ .++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEEC
Confidence 444 7888888888877762 0 11 111 14778888888 2221100112 35677777777
Q ss_pred cCCCCCcH-HHHHHHHh-----cCCCCcEeeCCCcccc
Q 018571 169 GGSPRSNH-AARRCLGI-----LKPKLNDVEGDSWEEL 200 (354)
Q Consensus 169 ~gC~~ItD-~sL~~La~-----~cp~L~~L~ls~~~~t 200 (354)
++|..++. ..-..++. .+++|++|+++++..+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 77664554 22222322 2466666666665444
No 112
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=96.78 E-value=0.00017 Score=67.28 Aligned_cols=129 Identities=9% Similarity=0.004 Sum_probs=76.7
Q ss_pred Hhhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhc
Q 018571 110 SLAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 185 (354)
Q Consensus 110 ~la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~ 185 (354)
.+.. ++|+.|+|+++.++..... ..+++|+.|+| .++ .+.....++++|++|+++++. ++.-.-..+ ..
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~-~~ 122 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNR-LTSLPLGAL-RG 122 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCEEECC---SCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSC-CCCCCSSTT-TT
T ss_pred HhhcCCCCCEEECCCCccCcccCC---CCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCc-CcccCHHHH-cC
Confidence 3444 7888888888866543221 35788888888 444 122223567888888888763 221100112 34
Q ss_pred CCCCcEeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 186 KPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 186 cp~L~~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
+++|++|++++..+..... +...+++|+.|+ ..+++.-. ..+...+++|+. |++.++.++
T Consensus 123 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~------L~L~~N~l~ 185 (290)
T 1p9a_G 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDT------LLLQENSLY 185 (290)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCE------EECCSSCCC
T ss_pred CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC-HHHhcCcCCCCE------EECCCCcCC
Confidence 7888888888776553221 124567788876 33444211 123356788888 999888853
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.76 E-value=4.3e-05 Score=73.41 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=45.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++|+|+...-..+. .+++|+.|+| .|+.-.-. ...++++|++|+|+++. ++...-..+ ..+++|+
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~~~~~~-~~l~~L~ 139 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNH-IVVVDRNAF-EDMAQLQ 139 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCC
T ss_pred cccCEEECCCCcCCccChhhcc-CCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCc-ccEECHHHh-CCcccCC
Confidence 5666666666655432222222 3666666666 22211000 11356666666666653 221100111 2356666
Q ss_pred EeeCCCccccchh--hhh--ccCccccccc
Q 018571 191 DVEGDSWEELVNT--DIG--HGAQSLRWFV 216 (354)
Q Consensus 191 ~L~ls~~~~td~~--~i~--~~~~~L~~L~ 216 (354)
+|++++..++... .+. ..+++|+.|+
T Consensus 140 ~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp EEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred EEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 6666665544321 111 3355566655
No 114
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.73 E-value=8.3e-05 Score=70.02 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=7.9
Q ss_pred hcCCcceecCCCCceeecCCC
Q 018571 230 TECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 230 ~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
..+++|+. +++.++.
T Consensus 261 ~~l~~L~~------L~l~~N~ 275 (332)
T 2ft3_A 261 PDLKLLQV------VYLHTNN 275 (332)
T ss_dssp GGCTTCCE------EECCSSC
T ss_pred hcCccCCE------EECCCCC
Confidence 34555555 5555555
No 115
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.71 E-value=4.8e-05 Score=71.63 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=37.9
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.++...-..+. .+++|++|+| .++...-..+ .++++|++|+++++. +++..-..++...+.|+
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSC-CEEECCGGGGCCCTTCC
T ss_pred CCCCEEECcCCeeCCcCCHHHh-CCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCc
Confidence 5666666666654422212222 2666666666 3332111112 246666666666653 22111112232222666
Q ss_pred EeeCCCccc
Q 018571 191 DVEGDSWEE 199 (354)
Q Consensus 191 ~L~ls~~~~ 199 (354)
+|++++...
T Consensus 178 ~L~L~~N~l 186 (313)
T 1ogq_A 178 SMTISRNRL 186 (313)
T ss_dssp EEECCSSEE
T ss_pred EEECcCCee
Confidence 666655443
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.65 E-value=0.00011 Score=64.44 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=74.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|+++++++..-. ....+++|+.|+| .++.-.- ....++++|++|+++++. ++...- ..-.++++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~ 127 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQ-LQSLPD-GVFDKLTQLK 127 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred ccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCc-CcccCH-hHhccCCcCC
Confidence 8899999999876633222 2234899999999 4542111 112468999999999874 332111 1124589999
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
+|++++..+++... ....+++|+.|+ ...+ ...||.|+. +++.++.
T Consensus 128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~------L~~~~n~ 176 (208)
T 2o6s_A 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRY------LSEWINK 176 (208)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHH------HHHHHHH
T ss_pred EEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHH------HHHHHHh
Confidence 99998876654322 124567888876 1112 235777777 7666555
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.63 E-value=0.00011 Score=65.71 Aligned_cols=128 Identities=9% Similarity=0.008 Sum_probs=66.9
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
+.++.|+|++++++...-..+...+++|+.|+| .|+.-.-..+ .++++|++|+|+++.- +...-..+ .++++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l-~~~~~~~~-~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLTSNRL-ENVQHKMF-KGLESLK 108 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCC-CCCCGGGG-TTCSSCC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-CCCCCCCEEECCCCcc-CccCHhHh-cCCcCCC
Confidence 456777777776554321112234777777777 3332111112 3577777777777642 21111112 3467777
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
+|++++..++.... ...++++|+.|+ ..+++.-.- .....+++|+. +++.+.++
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~L~~N~l 165 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLST------LNLLANPF 165 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCE------EECCSCCE
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCE------EEecCcCC
Confidence 77777766554311 123456676665 223332111 12245677777 88877774
No 118
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.63 E-value=0.00022 Score=73.82 Aligned_cols=126 Identities=8% Similarity=-0.059 Sum_probs=72.0
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---e-ecH----HHHHHHH--hcCCCCCEEEecCCCCCcHHHHHH--
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---R-ITA----AGVSEFL--LHCHSLETLRCGGSPRSNHAARRC-- 181 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~-ITd----~gl~~La--~~Cp~Le~L~L~gC~~ItD~sL~~-- 181 (354)
++|++|+|++|.++..--..+. .+++|+.|+| . ++. .++..+. ..|++|++|++++|.- + .+-.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~--~ip~~~ 324 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-K--TFPVET 324 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-S--SCCCHH
T ss_pred CCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-C--ccCchh
Confidence 7899999999854432222333 3889999999 4 776 2233321 2468899999998753 2 1211
Q ss_pred HHhcCCCCcEeeCCCcccc-chhhhhccCccccccc--cCCCCHHHHHHHHhcCCc-ceecCCCCceeecCCCCC
Q 018571 182 LGILKPKLNDVEGDSWEEL-VNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPR-IIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 182 La~~cp~L~~L~ls~~~~t-d~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~-L~~~p~~~~L~l~gC~~s 252 (354)
.-.++++|++|+++++... ... .-..+++|+.|+ ...++ .+..-...+++ |+. |++.++.++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~------L~Ls~N~l~ 390 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVEN------LSFAHNKLK 390 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCE------EECCSSCCS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcE------EEccCCcCc
Confidence 2235788999988877655 221 123345555555 22233 11111344555 666 666666643
No 119
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.61 E-value=0.00015 Score=68.34 Aligned_cols=124 Identities=10% Similarity=-0.021 Sum_probs=67.2
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
+.. ++|++|+|++|+++...-..+. .+++|++|+| .++.-. . ...++|++|+++++. ++...- ..-.++
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~--~--~~~~~L~~L~l~~n~-i~~~~~-~~~~~l 146 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLVEIP--P--NLPSSLVELRIHDNR-IRKVPK-GVFSGL 146 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCCSCC--S--SCCTTCCEEECCSSC-CCCCCS-GGGSSC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCCccC--c--cccccCCEEECCCCc-cCccCH-hHhCCC
Confidence 444 6777777777766644333333 3777777777 333100 0 112678888887763 221100 112357
Q ss_pred CCCcEeeCCCccccchhhhh---ccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 187 PKLNDVEGDSWEELVNTDIG---HGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 187 p~L~~L~ls~~~~td~~~i~---~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
++|++|++++....+.+... ..+ +|+.|+ ...+++-. ....++|+. +++.++.++
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~----~~~~~~L~~------L~l~~n~i~ 206 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP----KDLPETLNE------LHLDHNKIQ 206 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC----SSSCSSCSC------CBCCSSCCC
T ss_pred ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC----ccccCCCCE------EECCCCcCC
Confidence 88888888877665433321 122 666666 22333200 012257777 888888754
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.53 E-value=0.00016 Score=64.72 Aligned_cols=127 Identities=10% Similarity=-0.024 Sum_probs=64.4
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++++.|+|++++|+...-..+ ..+++|+.|+| .|+.-.-..+ .++++|++|+|+++. ++.-. ..+-..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNK-ITELP-KSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCc-CCccC-HhHccCCCCCC
Confidence 467777777776553222222 23677777777 3332111112 356777777777663 22100 01123467777
Q ss_pred EeeCCCccccchhh-hhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
.|++++..+..... .-..+++|+.|+ ..+++...- .....+++|+. +++.+.++
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~L~~N~~ 164 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQT------MHLAQNPF 164 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE------EECCSSCE
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCE------EEeCCCCc
Confidence 77777665544211 123456666665 222322111 12235677777 77777663
No 121
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.51 E-value=0.00025 Score=71.30 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=65.2
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCC--CcHHHHHHHHh
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPR--SNHAARRCLGI 184 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~--ItD~sL~~La~ 184 (354)
|.. ++|++|+|++|+|+...-.. ...+++|++|+| +|+.-.-.. ..++++|++|++++|.- +.+. .+ .
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~-f~~L~~L~~L~Ls~N~l~~l~~~~-f~~L~~L~~L~Ls~N~l~~l~~~---~~-~ 145 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENF---PI-G 145 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECGGG-GTTCTTCCEEECTTSCCCCSTTC---CC-T
T ss_pred HhCCCCCCEEECCCCcCCCcChhH-hcCCCCCCEEEccCCcCCCCCHHH-hcCCCCCCEEECCCCcCCCCChh---hh-h
Confidence 455 89999999999766322112 245899999999 444211112 24789999999998842 2221 12 3
Q ss_pred cCCCCcEeeCCCccccch--hhhhccCccccccc
Q 018571 185 LKPKLNDVEGDSWEELVN--TDIGHGAQSLRWFV 216 (354)
Q Consensus 185 ~cp~L~~L~ls~~~~td~--~~i~~~~~~L~~L~ 216 (354)
++++|++|++++..+... ......+++|++|+
T Consensus 146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred cCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence 589999999988766542 22335567888887
No 122
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.37 E-value=0.00011 Score=69.25 Aligned_cols=130 Identities=13% Similarity=0.047 Sum_probs=70.0
Q ss_pred Hhhc-CCccEEEeec-CCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHh
Q 018571 110 SLAD-SSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGI 184 (354)
Q Consensus 110 ~la~-~~L~~LdLs~-C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~ 184 (354)
.+.. ++|++|+|++ +.+++..-..+. .+++|+.|+| .++...-..+ .++++|++|+++++.- +...-..+ .
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l-~~~~p~~~-~ 146 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNAL-SGTLPPSI-S 146 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSEE-ESCCCGGG-G
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCcc-CCcCChHH-h
Confidence 4444 7888888885 454432222233 3788888888 3331111122 3678888888887742 21101122 3
Q ss_pred cCCCCcEeeCCCccccch--hhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCC
Q 018571 185 LKPKLNDVEGDSWEELVN--TDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 251 (354)
Q Consensus 185 ~cp~L~~L~ls~~~~td~--~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~ 251 (354)
.+++|++|++++..++.. ..++...++|+.|+ ...++...-..+ ..++ |+. +++.+|.+
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~------L~Ls~N~l 209 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAF------VDLSRNML 209 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSE------EECCSSEE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccE------EECcCCcc
Confidence 478888888887766532 22233223777776 222331111112 2333 788 88888874
No 123
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.34 E-value=0.00075 Score=72.02 Aligned_cols=83 Identities=7% Similarity=0.050 Sum_probs=48.2
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++|+++...-..+ ..+++|+.|+| .++...-..+ .++++|++|+++++. ++...-..+ .++++|+
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~-i~~~~~~~~-~~l~~L~ 365 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYIDLQKNH-IAIIQDQTF-KFLEKLQ 365 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCSC-SSCTTCCEEECCSCC-CCCCCSSCS-CSCCCCC
T ss_pred CCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHHh-cCCCCCCEEECCCCC-CCccChhhh-cCCCCCC
Confidence 788999999887664432233 34888999888 4432111122 357778888887763 221110111 3467777
Q ss_pred EeeCCCcccc
Q 018571 191 DVEGDSWEEL 200 (354)
Q Consensus 191 ~L~ls~~~~t 200 (354)
.|++++..++
T Consensus 366 ~L~Ls~N~l~ 375 (844)
T 3j0a_A 366 TLDLRDNALT 375 (844)
T ss_dssp EEEEETCCSC
T ss_pred EEECCCCCCC
Confidence 7777665443
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.29 E-value=0.00067 Score=70.74 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=40.3
Q ss_pred CCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCccee
Q 018571 160 CHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIV 237 (354)
Q Consensus 160 Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~ 237 (354)
.++|++|++++|. ++. +...+++|+.|+++++.++.-. ..+++|+.|+ ..+++ .+......+++|+.
T Consensus 220 ~~~L~~L~Ls~N~-L~~-----lp~~l~~L~~L~Ls~N~L~~lp---~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 220 PSGLKELIVSGNR-LTS-----LPVLPSELKELMVSGNRLTSLP---MLPSGLLSLSVYRNQLT--RLPESLIHLSSETT 288 (622)
T ss_dssp CTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCC--SCCGGGGGSCTTCE
T ss_pred CCCCCEEEccCCc-cCc-----CCCCCCcCcEEECCCCCCCcCC---cccccCcEEeCCCCCCC--cCCHHHhhccccCE
Confidence 3556666666552 222 2244566666666665444211 2455666665 33444 22222456777777
Q ss_pred cCCCCceeecCCCCC
Q 018571 238 NPKPSPFGFRGFEVP 252 (354)
Q Consensus 238 ~p~~~~L~l~gC~~s 252 (354)
+++.+++++
T Consensus 289 ------L~L~~N~l~ 297 (622)
T 3g06_A 289 ------VNLEGNPLS 297 (622)
T ss_dssp ------EECCSCCCC
T ss_pred ------EEecCCCCC
Confidence 777777754
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.13 E-value=0.0066 Score=63.20 Aligned_cols=53 Identities=6% Similarity=-0.048 Sum_probs=26.9
Q ss_pred CCCCcEeeCCCccccchhhhhccCccccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 186 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 186 cp~L~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
+++|++|+++++.++.. .....+|+.|+ ..+++. +...+++|+. |++.+|.++
T Consensus 140 l~~L~~L~Ls~N~l~~l---~~~~~~L~~L~L~~N~l~~-----l~~~~~~L~~------L~Ls~N~l~ 194 (622)
T 3g06_A 140 PPGLQELSVSDNQLASL---PALPSELCKLWAYNNQLTS-----LPMLPSGLQE------LSVSDNQLA 194 (622)
T ss_dssp CTTCCEEECCSSCCSCC---CCCCTTCCEEECCSSCCSC-----CCCCCTTCCE------EECCSSCCS
T ss_pred CCCCCEEECcCCcCCCc---CCccCCCCEEECCCCCCCC-----CcccCCCCcE------EECCCCCCC
Confidence 35555555555544321 12234555554 222332 1145677777 888888753
No 126
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.04 E-value=0.0041 Score=58.34 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=48.9
Q ss_pred CCccEEEeecCCCCHH-HHHHHHHhCCCCcEEEE---eecHH-HHHHHHhcCCCCCEEEecCCCCCc-----HHHHHHHH
Q 018571 114 SSWEILDISGSDVSDF-GLVKVAQMCKSLKAVDI---RITAA-GVSEFLLHCHSLETLRCGGSPRSN-----HAARRCLG 183 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~-gL~~la~~C~~L~~LdL---~ITd~-gl~~La~~Cp~Le~L~L~gC~~It-----D~sL~~La 183 (354)
++|++|+|++++|++- ++..+...+++|+.|+| .|++- .+..+. .. +|++|+|.+.+-.+ ..-...+-
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 7788888888866652 34445556888888888 55543 233332 23 78888888776432 13334555
Q ss_pred hcCCCCcEeeC
Q 018571 184 ILKPKLNDVEG 194 (354)
Q Consensus 184 ~~cp~L~~L~l 194 (354)
..+|+|+.||-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 66788887764
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.02 E-value=0.00031 Score=67.39 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=14.5
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI 146 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL 146 (354)
++|++|+|++++++...-..+ ..+++|+.|+|
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L 119 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLF-SDLQALEVLLL 119 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHHHh-CCCcCCCEEEC
Confidence 455555555554432211111 22555555555
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.94 E-value=0.00051 Score=61.36 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=63.6
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++++|+...-..+. .+++|+.|+| .++...-..+ .++++|++|+|+++.- +...-..+ ..+++|+
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l-~~~~~~~~-~~l~~L~ 132 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSNRLENVQHKMF-KGLESLKTLMLRSNRI-TCVGNDSF-IGLSSVR 132 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCGGGG-TTCSSCCEEECTTSCC-CCBCTTSS-TTCTTCS
T ss_pred CCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCCccCccCHhHh-cCCcCCCEEECCCCcC-CeECHhHc-CCCccCC
Confidence 8899999999977653322333 4899999999 4443221122 4789999999998752 21111122 2578999
Q ss_pred EeeCCCccccchh-hhhccCccccccc
Q 018571 191 DVEGDSWEELVNT-DIGHGAQSLRWFV 216 (354)
Q Consensus 191 ~L~ls~~~~td~~-~i~~~~~~L~~L~ 216 (354)
.|++++..++... ..-..+++|+.|+
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 9999887766532 1124567777775
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=95.77 E-value=0.0044 Score=64.01 Aligned_cols=13 Identities=8% Similarity=-0.023 Sum_probs=6.0
Q ss_pred CCCCcEeeCCCcc
Q 018571 186 KPKLNDVEGDSWE 198 (354)
Q Consensus 186 cp~L~~L~ls~~~ 198 (354)
+++|++|+++++.
T Consensus 159 l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 159 PTSLEVLSVRNNQ 171 (571)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCcCEEECCCCC
Confidence 3444444444443
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.48 E-value=0.00088 Score=57.17 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=38.2
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
+++++|+|++++++...-..+ ..+++|+.|+| .++.-.- ....++++|++|+++++. ++...- ..-..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENK-LQSLPN-GVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCC-ccccCH-HHhhCCcccC
Confidence 566777777765542211111 23566666666 3331110 111356666666666653 221100 0112356666
Q ss_pred EeeCCCccc
Q 018571 191 DVEGDSWEE 199 (354)
Q Consensus 191 ~L~ls~~~~ 199 (354)
+|++++..+
T Consensus 104 ~L~l~~N~l 112 (177)
T 2o6r_A 104 ELALDTNQL 112 (177)
T ss_dssp EEECCSSCC
T ss_pred EEECcCCcc
Confidence 666655443
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.36 E-value=0.00097 Score=59.52 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=62.8
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++|+|+...-..+. .+++|+.|+| .|+.-. ..+..++++|++|+|+++. ++...-..+ ..+++|+
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~ 131 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGNKITELP-KSLFEGLFSLQLLLLNANK-INCLRVDAF-QDLHNLN 131 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCC
T ss_pred CCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCCcCCccC-HhHccCCCCCCEEECCCCC-CCEeCHHHc-CCCCCCC
Confidence 7899999999977643323333 4899999999 444211 1122468999999999874 322111122 2478999
Q ss_pred EeeCCCccccchhh-hhccCccccccc
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV 216 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~ 216 (354)
+|++++..++.... .-..+++|+.|+
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 99998877654322 123456777775
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.29 E-value=0.0044 Score=63.66 Aligned_cols=98 Identities=14% Similarity=0.070 Sum_probs=66.6
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHH-HHHHHhc
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAA-RRCLGIL 185 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~s-L~~La~~ 185 (354)
+.. ++|+.|+|++|.++ .+-.-...+++|+.|+| .|+. +..+ .++++|++|+|+++. +++.. ...++ .
T Consensus 459 ~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp~l-~~l~~L~~L~Ls~N~-l~~~~~p~~l~-~ 531 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN--VDGV-ANLPRLQELLLCNNR-LQQSAAIQPLV-S 531 (567)
T ss_dssp GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC--CGGG-TTCSSCCEEECCSSC-CCSSSTTGGGG-G
T ss_pred ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC--Cccc-CCCCCCcEEECCCCC-CCCCCCcHHHh-c
Confidence 444 89999999999776 22122335999999999 5653 4434 479999999999874 33321 22344 5
Q ss_pred CCCCcEeeCCCccccchh----hhhccCcccccc
Q 018571 186 KPKLNDVEGDSWEELVNT----DIGHGAQSLRWF 215 (354)
Q Consensus 186 cp~L~~L~ls~~~~td~~----~i~~~~~~L~~L 215 (354)
+++|+.|++++..+++.. .+...+++|+.|
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 899999999988765431 123446677665
No 133
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.22 E-value=0.045 Score=51.19 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcEeeCCCccccchhhhh--ccCccccccc------cCCCCH-
Q 018571 152 GVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIG--HGAQSLRWFV------WPNIDK- 222 (354)
Q Consensus 152 gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~L~ls~~~~td~~~i~--~~~~~L~~L~------C~~ITD- 222 (354)
.+..+.+++|+|++|+|++..-.+=.++..+...+|+|+.|++++..+.+...+. .++ +|+.|+ |..+.+
T Consensus 161 ~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 161 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSH
T ss_pred HHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcc
Confidence 3444446677788888876542221223334446778888877776666543331 122 666665 333322
Q ss_pred -HHHHHHHhcCCccee
Q 018571 223 -DSIEMMSTECPRIIV 237 (354)
Q Consensus 223 -~~l~~L~~~Cp~L~~ 237 (354)
.-...+...+|+|+.
T Consensus 240 ~~y~~~il~~~P~L~~ 255 (267)
T 3rw6_A 240 STYISAIRERFPKLLR 255 (267)
T ss_dssp HHHHHHHHHHCTTCCE
T ss_pred hhHHHHHHHHCcccCe
Confidence 345677889999998
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.14 E-value=0.0019 Score=57.83 Aligned_cols=98 Identities=11% Similarity=-0.044 Sum_probs=62.5
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|+++...-. +...+++|+.|+| .|+.-.- ....++++|++|+|+++. ++. +-.-..++++|+
T Consensus 64 ~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~ 138 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNK-LTE--LPRGIERLTHLT 138 (229)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCS--CCTTGGGCTTCS
T ss_pred cCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCc-ccc--cCcccccCCCCC
Confidence 8899999999966533222 2244899999999 4542111 122468999999999874 331 111125689999
Q ss_pred EeeCCCccccchhh-hhccCccccccc
Q 018571 191 DVEGDSWEELVNTD-IGHGAQSLRWFV 216 (354)
Q Consensus 191 ~L~ls~~~~td~~~-i~~~~~~L~~L~ 216 (354)
+|++++..+..... .-..+++|+.|+
T Consensus 139 ~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 139 HLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 99998876654321 124567777775
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.09 E-value=0.003 Score=62.79 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=7.2
Q ss_pred CCCCcEeeCCCccc
Q 018571 186 KPKLNDVEGDSWEE 199 (354)
Q Consensus 186 cp~L~~L~ls~~~~ 199 (354)
+++|++|+++++..
T Consensus 194 l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 194 LPFLTAIYADNNSL 207 (454)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcC
Confidence 55555555554433
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.04 E-value=0.0021 Score=56.27 Aligned_cols=82 Identities=17% Similarity=0.065 Sum_probs=48.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
+++++|+|+++.|+... .....+++|+.|+| .|+.-.-..+ .++++|++|+|+++. ++...-..+ ..+++|+
T Consensus 31 ~~l~~L~L~~n~i~~ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~~~f-~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP--KELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNR-LRCIPPRTF-DGLKSLR 105 (193)
T ss_dssp TTCCEEECCSSCCCSCC--GGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCC
T ss_pred CCCCEEECCCCcCchhH--HHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCc-cCEeCHHHh-CCCCCCC
Confidence 57888888888665322 22344788888888 4442211122 367888888888764 222111112 2467888
Q ss_pred EeeCCCcccc
Q 018571 191 DVEGDSWEEL 200 (354)
Q Consensus 191 ~L~ls~~~~t 200 (354)
+|++++..++
T Consensus 106 ~L~L~~N~l~ 115 (193)
T 2wfh_A 106 LLSLHGNDIS 115 (193)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 8888776554
No 137
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.01 E-value=0.012 Score=58.44 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=7.9
Q ss_pred CCccEEEeecCCCC
Q 018571 114 SSWEILDISGSDVS 127 (354)
Q Consensus 114 ~~L~~LdLs~C~IT 127 (354)
++|++|+++++.++
T Consensus 91 ~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 91 PHLESLVASCNSLT 104 (454)
T ss_dssp TTCSEEECCSSCCS
T ss_pred CCCCEEEccCCcCC
Confidence 45666666665443
No 138
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=94.99 E-value=0.0055 Score=63.28 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=64.5
Q ss_pred CccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCcE
Q 018571 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLND 191 (354)
Q Consensus 115 ~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~~ 191 (354)
+|++|+|++|+++. +.. .+++|+.|+| .|+. + ...+++|++|+|++|. ++. +-. ..++|+.
T Consensus 121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~--l---p~~l~~L~~L~Ls~N~-L~~--lp~---l~~~L~~ 184 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM--L---PELPTSLEVLSVRNNQ-LTF--LPE---LPESLEA 184 (571)
T ss_dssp TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSSC-CSC--CCC---CCTTCCE
T ss_pred CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc--C---CCcCCCcCEEECCCCC-CCC--cch---hhCCCCE
Confidence 66666666664443 111 4677777777 4432 1 1256788888888874 222 111 2278999
Q ss_pred eeCCCccccchhhhhccCccc-------cccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCCc
Q 018571 192 VEGDSWEELVNTDIGHGAQSL-------RWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 253 (354)
Q Consensus 192 L~ls~~~~td~~~i~~~~~~L-------~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s~ 253 (354)
|++++..++....++. +| +.|+ ...|+. +..-...+++|+. |++.+++++.
T Consensus 185 L~Ls~N~L~~lp~~~~---~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~------L~L~~N~l~~ 244 (571)
T 3cvr_A 185 LDVSTNLLESLPAVPV---RNHHSEETEIFFRCRENRITH--IPENILSLDPTCT------IILEDNPLSS 244 (571)
T ss_dssp EECCSSCCSSCCCCC-----------CCEEEECCSSCCCC--CCGGGGGSCTTEE------EECCSSSCCH
T ss_pred EECcCCCCCchhhHHH---hhhcccccceEEecCCCccee--cCHHHhcCCCCCE------EEeeCCcCCC
Confidence 9998876654222221 55 7766 334542 2222234888888 9999988543
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.88 E-value=0.003 Score=66.75 Aligned_cols=101 Identities=12% Similarity=-0.000 Sum_probs=58.6
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHH-HHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAAR-RCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL-~~La~~cp~L 189 (354)
+.|+.|+|++|.++.-. ..+. .+++|+.|+| .|+ .|-.-..++++|++|+|+++. ++ .+ ..+ .++++|
T Consensus 224 ~~L~~L~Ls~n~l~~l~-~~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~-~~l~~L 295 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNIS-ANIF-KYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAEL-GSCFQL 295 (727)
T ss_dssp CCCCEEECTTSCCSCCC-GGGG-GCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSG-GGGTTC
T ss_pred CCCcEEECCCCCCCCCC-hhhc-CCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhh-cCCCCC
Confidence 77888888888544211 0122 4788888888 554 222212467888888888775 33 11 112 347888
Q ss_pred cEeeCCCccccchhhhhccCccccccc--cCCCCH
Q 018571 190 NDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDK 222 (354)
Q Consensus 190 ~~L~ls~~~~td~~~i~~~~~~L~~L~--C~~ITD 222 (354)
++|+++++.+......-..+++|+.|+ ...++.
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 888887775542211124466777776 334553
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.85 E-value=0.011 Score=62.45 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=57.0
Q ss_pred HhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHH-HHHHhcCCCCcEeeCCCccccchhhhhccCcc
Q 018571 136 QMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAAR-RCLGILKPKLNDVEGDSWEELVNTDIGHGAQS 211 (354)
Q Consensus 136 ~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL-~~La~~cp~L~~L~ls~~~~td~~~i~~~~~~ 211 (354)
..+++|+.|+| .++. |..-..++++|++|+|+++. ++ .+ ..+ .++++|+.|++++..++..-..-..+++
T Consensus 221 ~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNS-LT--ELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSC-CS--CCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred ccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCc-Cc--ccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 34677888887 3331 11111257788888888764 22 11 123 3577888888877765522111244567
Q ss_pred ccccc--cCCCCHHHHHHHHhcCCcceecCCCCceeecCCCCC
Q 018571 212 LRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 252 (354)
Q Consensus 212 L~~L~--C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~~s 252 (354)
|+.|+ ...|+ .+..-...+++|+. |++.+++++
T Consensus 295 L~~L~L~~N~l~--~lp~~~~~l~~L~~------L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNMVT--TLPWEFGNLCNLQF------LGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSCCC--CCCSSTTSCTTCCC------EECTTSCCC
T ss_pred CCEEECCCCCCC--ccChhhhcCCCccE------EeCCCCccC
Confidence 77776 22343 11111356777887 888888754
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.78 E-value=0.01 Score=55.78 Aligned_cols=28 Identities=7% Similarity=0.245 Sum_probs=21.5
Q ss_pred cCCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 217 WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 217 C~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
-..+.......+..+|++|+. +++.++.
T Consensus 210 ~~~l~~~~~~~l~~~~~~L~~------l~L~~n~ 237 (329)
T 3sb4_A 210 EGKLDNADFKLIRDYMPNLVS------LDISKTN 237 (329)
T ss_dssp EECCCHHHHHHHHHHCTTCCE------EECTTBC
T ss_pred eeeecHHHHHHHHHhcCCCeE------EECCCCC
Confidence 344677777888888999999 8887764
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.22 E-value=0.0049 Score=57.97 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=71.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC-CCCcHHHHHHHHhcCCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC-~~ItD~sL~~La~~cp~L 189 (354)
.++..+.+.+ .+...++..+...|++|+.|+| .|+.-+-.++ .+|++|++|++..- ..|.+.+ -.+|++|
T Consensus 202 ~~~~~l~~~~-~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF-~~~~~L~~l~l~~ni~~I~~~a----F~~~~~L 275 (329)
T 3sb4_A 202 RDINFLTIEG-KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF-AQKKYLLKIKLPHNLKTIGQRV----FSNCGRL 275 (329)
T ss_dssp GGCSEEEEEE-CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT-TTCTTCCEEECCTTCCEECTTT----TTTCTTC
T ss_pred cccceEEEee-eecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh-hCCCCCCEEECCcccceehHHH----hhCChhc
Confidence 6778888877 4777788888878999999998 2433222223 47899999998752 2222221 1358888
Q ss_pred c-EeeCCCccccc--hhhhhccCcccccccc--CCCCHHHHHHHHhcCCccee
Q 018571 190 N-DVEGDSWEELV--NTDIGHGAQSLRWFVW--PNIDKDSIEMMSTECPRIIV 237 (354)
Q Consensus 190 ~-~L~ls~~~~td--~~~i~~~~~~L~~L~C--~~ITD~~l~~L~~~Cp~L~~ 237 (354)
+ .|++.. .++. .+. -.+|++|+.+.. .+|+.-+-. .-.+|++|+.
T Consensus 276 ~~~l~l~~-~l~~I~~~a-F~~c~~L~~l~l~~n~i~~I~~~-aF~~~~~L~~ 325 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGA-FMGCDNLRYVLATGDKITTLGDE-LFGNGVPSKL 325 (329)
T ss_dssp CEEEEECT-TCCEECTTT-TTTCTTEEEEEECSSCCCEECTT-TTCTTCCCCE
T ss_pred cEEEEEcc-cceEEchhh-hhCCccCCEEEeCCCccCccchh-hhcCCcchhh
Confidence 8 888765 3332 222 356788888762 233332211 2357788776
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.05 E-value=0.003 Score=53.76 Aligned_cols=83 Identities=7% Similarity=-0.047 Sum_probs=54.2
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|++|+|++|.++...-..+ ..+++|+.|+| .++.-.- ....++++|++|+++++. ++.-. ..+...+++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~ 127 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVF-DKLTKLTILYLHENKLQSLPN-GVFDKLTQLKELALDTNQ-LKSVP-DGIFDRLTSLQ 127 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCC
T ss_pred ccccEEECCCCcceEeChhHc-cCCCccCEEECCCCCccccCH-HHhhCCcccCEEECcCCc-ceEeC-HHHhcCCcccC
Confidence 889999999997663222222 35899999999 5552111 122468999999999874 33211 12234589999
Q ss_pred EeeCCCcccc
Q 018571 191 DVEGDSWEEL 200 (354)
Q Consensus 191 ~L~ls~~~~t 200 (354)
+|++++....
T Consensus 128 ~L~l~~N~~~ 137 (177)
T 2o6r_A 128 KIWLHTNPWD 137 (177)
T ss_dssp EEECCSSCBC
T ss_pred EEEecCCCee
Confidence 9999876543
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=93.94 E-value=0.0021 Score=56.05 Aligned_cols=84 Identities=8% Similarity=0.068 Sum_probs=41.7
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
+++++|+|+++.++...-..+...+++|+.|+| .|+...-..+ .++++|++|+|+++. +++..-..+ .++++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENK-IKEISNKMF-LGLHQLK 105 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCC-CCEECSSSS-TTCTTCC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCc-CCccCHHHh-cCCCCCC
Confidence 366777777765543222112234667777777 3332111112 356677777777653 221111111 2356677
Q ss_pred EeeCCCcccc
Q 018571 191 DVEGDSWEEL 200 (354)
Q Consensus 191 ~L~ls~~~~t 200 (354)
+|++++..++
T Consensus 106 ~L~L~~N~l~ 115 (192)
T 1w8a_A 106 TLNLYDNQIS 115 (192)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCcCC
Confidence 7777665544
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=93.37 E-value=0.003 Score=55.00 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=55.5
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcC
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 186 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~c 186 (354)
+.. ++|++|+|++++++...-..+. .+++|+.|+| .|+...-..+ .+.++|++|+|+++. ++...-..+ ..+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~-~~l 125 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISNKMF-LGLHQLKTLNLYDNQ-ISCVMPGSF-EHL 125 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECSSSS-TTCTTCCEEECCSSC-CCEECTTSS-TTC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCc-CCeeCHHHh-hcC
Confidence 344 8999999999977643222333 4899999999 4432111112 368999999999874 332111122 347
Q ss_pred CCCcEeeCCCcccc
Q 018571 187 PKLNDVEGDSWEEL 200 (354)
Q Consensus 187 p~L~~L~ls~~~~t 200 (354)
++|++|++++....
T Consensus 126 ~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 126 NSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECTTCCBC
T ss_pred CCCCEEEeCCCCcc
Confidence 89999999876544
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=92.87 E-value=0.0078 Score=51.40 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=25.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS 171 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC 171 (354)
++++.|+|++++|+...-..+. .+++|+.|+| +|+.-.- .+..++++|++|+|+++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCC
Confidence 4566666666644432111122 2556666666 3331000 01134556666666554
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=92.40 E-value=0.0079 Score=52.56 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=55.7
Q ss_pred Hhhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhc
Q 018571 110 SLAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 185 (354)
Q Consensus 110 ~la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~ 185 (354)
.+.. ++|+.|+|+++.|+...-..+. .+++|+.|+| .|+.-.-..+ .++++|++|+|+++. ++.-.- ..-..
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~L~~N~-l~~~~~-~~~~~ 124 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIPPRTF-DGLKSLRLLSLHGND-ISVVPE-GAFND 124 (193)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCSSC-CCBCCT-TTTTT
T ss_pred HhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeCHHHh-CCCCCCCEEECCCCC-CCeeCh-hhhhc
Confidence 3444 8999999999977653322333 4899999999 4443221223 368999999999874 321111 11234
Q ss_pred CCCCcEeeCCCccc
Q 018571 186 KPKLNDVEGDSWEE 199 (354)
Q Consensus 186 cp~L~~L~ls~~~~ 199 (354)
+++|+.|++++...
T Consensus 125 l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 125 LSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSCE
T ss_pred CccccEEEeCCCCe
Confidence 78999999976543
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=91.62 E-value=0.016 Score=49.71 Aligned_cols=80 Identities=10% Similarity=-0.011 Sum_probs=38.3
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
++|+.|+|++++|+...-..+ ..+++|+.|+| .|+.-- ..+..++++|++|+|+++. ++.-.- ..-..+++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVF-DHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNH-LKSIPR-GAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCS
T ss_pred CCCcEEEeCCCCccccCHHHh-cCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCc-cceeCH-HHhccccCCC
Confidence 567777777775543211112 23667777777 333200 0111356667777776653 221000 1112356666
Q ss_pred EeeCCCc
Q 018571 191 DVEGDSW 197 (354)
Q Consensus 191 ~L~ls~~ 197 (354)
+|++++.
T Consensus 109 ~L~L~~N 115 (174)
T 2r9u_A 109 HIYLYNN 115 (174)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 6666554
No 149
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=89.55 E-value=0.0027 Score=60.42 Aligned_cols=32 Identities=9% Similarity=-0.040 Sum_probs=15.2
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI 146 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL 146 (354)
+++++|+|++++|+.-.-..+ ..+++|+.|+|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~L 61 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEI 61 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSS-TTCTTCCEEEE
T ss_pred CCCCEEEccCCcCCCcCHHHH-cCCCCCCEEEC
Confidence 355666666655442111111 23566666666
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=85.80 E-value=0.097 Score=51.21 Aligned_cols=53 Identities=19% Similarity=0.041 Sum_probs=24.4
Q ss_pred cCCCCCEEEecCCCC-------CcHHHHHHHHhcCCCCcEeeCCCc-cccchhhhhccCccccccc
Q 018571 159 HCHSLETLRCGGSPR-------SNHAARRCLGILKPKLNDVEGDSW-EELVNTDIGHGAQSLRWFV 216 (354)
Q Consensus 159 ~Cp~Le~L~L~gC~~-------ItD~sL~~La~~cp~L~~L~ls~~-~~td~~~i~~~~~~L~~L~ 216 (354)
+|++|+.+++.+... +.+.+. .+|++|+.+.+... .....+. -.+|.+|+.+.
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF----~~c~~L~~l~l~~~i~~I~~~a-F~~c~~L~~l~ 329 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCL----EGCPKLARFEIPESIRILGQGL-LGGNRKVTQLT 329 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTT----TTCTTCCEECCCTTCCEECTTT-TTTCCSCCEEE
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHh----hCCccCCeEEeCCceEEEhhhh-hcCCCCccEEE
Confidence 566666666654321 222211 24666666665421 1111111 24455666655
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=81.77 E-value=0.076 Score=51.95 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=22.7
Q ss_pred cCCCCcEeeCCCcccc-------chhhhhccCcccccccc-CCCCHHHHHHHHhcCCccee
Q 018571 185 LKPKLNDVEGDSWEEL-------VNTDIGHGAQSLRWFVW-PNIDKDSIEMMSTECPRIIV 237 (354)
Q Consensus 185 ~cp~L~~L~ls~~~~t-------d~~~i~~~~~~L~~L~C-~~ITD~~l~~L~~~Cp~L~~ 237 (354)
+|++|+.+.+.+.... ..+ .-.+|.+|+.+.- .+|+.-+- ..-.+|++|+.
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~-aF~~c~~L~~l~l~~~i~~I~~-~aF~~c~~L~~ 327 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPY-CLEGCPKLARFEIPESIRILGQ-GLLGGNRKVTQ 327 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTT-TTTTCTTCCEECCCTTCCEECT-TTTTTCCSCCE
T ss_pred CCCCCCEEEeCCccccCCcccEECHH-HhhCCccCCeEEeCCceEEEhh-hhhcCCCCccE
Confidence 4666666655443222 111 1245666666652 12222111 12245666666
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=79.88 E-value=0.16 Score=42.98 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=39.1
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPR 173 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ 173 (354)
++|+.|+|++++|+...- .+...+++|+.|+| .|+.-.- ....++++|++|+|++.+-
T Consensus 54 ~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred ccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCC
Confidence 889999999997663221 12245899999999 4442111 1224688999999988653
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=79.83 E-value=0.17 Score=43.24 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=41.6
Q ss_pred hhc-CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCC
Q 018571 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRS 174 (354)
Q Consensus 111 la~-~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~I 174 (354)
|.. ++|+.|+|++++++..-- .+...+++|+.|+| .|+.-.- ....++++|++|+|++.+-.
T Consensus 53 ~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBC
T ss_pred hcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcc
Confidence 344 899999999997664211 12245899999999 4442110 12346899999999987633
No 154
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=77.66 E-value=0.04 Score=52.15 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=6.0
Q ss_pred ccccccceeee
Q 018571 11 KTTSLKKLDLY 21 (354)
Q Consensus 11 ~~~~l~~l~~~ 21 (354)
++++++.|+|.
T Consensus 28 l~~~l~~L~Ls 38 (350)
T 4ay9_X 28 LPRNAIELRFV 38 (350)
T ss_dssp CCTTCSEEEEE
T ss_pred cCCCCCEEEcc
Confidence 44555555555
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=76.58 E-value=0.31 Score=46.72 Aligned_cols=109 Identities=10% Similarity=0.111 Sum_probs=62.1
Q ss_pred CCccEEEeecC--CCCHHHHHHHHHhCCCCcEEEE-----eecHHHHHHHHhcCCCCCEEEecC-CCCCcHHHHHHHHhc
Q 018571 114 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDI-----RITAAGVSEFLLHCHSLETLRCGG-SPRSNHAARRCLGIL 185 (354)
Q Consensus 114 ~~L~~LdLs~C--~ITD~gL~~la~~C~~L~~LdL-----~ITd~gl~~La~~Cp~Le~L~L~g-C~~ItD~sL~~La~~ 185 (354)
..|+.+.+.+. .|.+.. ...|++|+.+++ .|.+.. + .+|.+|+++++.. ...|.+.+. .+
T Consensus 265 ~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~~~i~~I~~~a---F-~~c~~L~~i~lp~~v~~I~~~aF----~~ 332 (394)
T 4gt6_A 265 AYLASVKMPDSVVSIGTGA----FMNCPALQDIEFSSRITELPESV---F-AGCISLKSIDIPEGITQILDDAF----AG 332 (394)
T ss_dssp SSCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTT---T-TTCTTCCEEECCTTCCEECTTTT----TT
T ss_pred ccccEEecccccceecCcc----cccccccccccCCCcccccCcee---e-cCCCCcCEEEeCCcccEehHhHh----hC
Confidence 67888888765 344332 235889999888 344432 2 4789999998853 334444422 35
Q ss_pred CCCCcEeeCCCc-cccchhhhhccCccccccccCCCCHHHHHHHHhcCCccee
Q 018571 186 KPKLNDVEGDSW-EELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIV 237 (354)
Q Consensus 186 cp~L~~L~ls~~-~~td~~~i~~~~~~L~~L~C~~ITD~~l~~L~~~Cp~L~~ 237 (354)
|.+|+.+.+... .....+. -.+|.+|+.+.-++ +...+. -...|..|+.
T Consensus 333 C~~L~~i~ip~sv~~I~~~a-F~~C~~L~~i~~~~-~~~~~~-~~~~~~~L~~ 382 (394)
T 4gt6_A 333 CEQLERIAIPSSVTKIPESA-FSNCTALNNIEYSG-SRSQWN-AISTDSGLQN 382 (394)
T ss_dssp CTTCCEEEECTTCCBCCGGG-GTTCTTCCEEEESS-CHHHHH-TCBCCCCC--
T ss_pred CCCCCEEEECcccCEEhHhH-hhCCCCCCEEEECC-ceeehh-hhhccCCCCE
Confidence 888988877432 2222222 35778888877322 111222 2356777766
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=65.47 E-value=1.7 Score=40.34 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=47.6
Q ss_pred cEEEeecC-CCCHHHHHHHHHhCCCCcEEEE----eecHHHHH-HHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCCc
Q 018571 117 EILDISGS-DVSDFGLVKVAQMCKSLKAVDI----RITAAGVS-EFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 190 (354)
Q Consensus 117 ~~LdLs~C-~ITD~gL~~la~~C~~L~~LdL----~ITd~gl~-~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L~ 190 (354)
..+++++. +++. +-.+ ..+++|+.|+| .|+. +. ....++++|++|+|+++. ++...-..+ .++++|+
T Consensus 11 ~~v~~~~~n~l~~--ip~l-~~~~~L~~L~l~~~n~l~~--~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~-~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS--LHHL-PGAENLTELYIENQQHLQH--LELRDLRGLGELRNLTIVKSG-LRFVAPDAF-HFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT--TTTS-CSCSCCSEEECCSCSSCCE--ECGGGSCSCCCCSEEECCSSC-CCEECTTGG-GSCSCCC
T ss_pred CEEEcCCCCCCCc--cCCC-CCCCCeeEEEccCCCCCCC--cChhHhccccCCCEEECCCCc-cceeCHHHh-cCCcCCC
Confidence 45667666 5654 2222 33678999999 2221 11 112478999999999874 432111122 4589999
Q ss_pred EeeCCCccccc
Q 018571 191 DVEGDSWEELV 201 (354)
Q Consensus 191 ~L~ls~~~~td 201 (354)
.|++++..+..
T Consensus 84 ~L~l~~N~l~~ 94 (347)
T 2ifg_A 84 RLNLSFNALES 94 (347)
T ss_dssp EEECCSSCCSC
T ss_pred EEeCCCCccce
Confidence 99998876653
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=64.37 E-value=0.51 Score=45.20 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=62.9
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhCCCCcEEEE-----eecHHHHHHHHhcCCCCCEEEecC-CCCCcHHHHHHHHhcCC
Q 018571 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDI-----RITAAGVSEFLLHCHSLETLRCGG-SPRSNHAARRCLGILKP 187 (354)
Q Consensus 114 ~~L~~LdLs~C~ITD~gL~~la~~C~~L~~LdL-----~ITd~gl~~La~~Cp~Le~L~L~g-C~~ItD~sL~~La~~cp 187 (354)
..++.+.+....+.+. ....|.+|+.+.+ .|.+.+ + .+|.+|+++++.. ...|.+.+. .+|.
T Consensus 276 ~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~~i~~I~~~a---F-~~c~~L~~i~lp~~v~~I~~~aF----~~c~ 343 (394)
T 4fs7_A 276 SGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLDSVKFIGEEA---F-ESCTSLVSIDLPYLVEEIGKRSF----RGCT 343 (394)
T ss_dssp TTCCEEEECSSEECTT----TTTTCTTCCEEEECTTCCEECTTT---T-TTCTTCCEECCCTTCCEECTTTT----TTCT
T ss_pred cccceeccCceeeccc----cccccccccccccccccceechhh---h-cCCCCCCEEEeCCcccEEhHHhc----cCCC
Confidence 4556665554433332 2456999999998 444432 2 4799999999853 233444322 3589
Q ss_pred CCcEeeCCCc-cccchhhhhccCccccccccC-CCCHHHHHHHHhcCCccee
Q 018571 188 KLNDVEGDSW-EELVNTDIGHGAQSLRWFVWP-NIDKDSIEMMSTECPRIIV 237 (354)
Q Consensus 188 ~L~~L~ls~~-~~td~~~i~~~~~~L~~L~C~-~ITD~~l~~L~~~Cp~L~~ 237 (354)
+|+.+.+... .....+. -.+|.+|+.+..+ +++.- ..-..+|++|+.
T Consensus 344 ~L~~i~lp~~l~~I~~~a-F~~C~~L~~i~lp~~~~~~--~~~F~~c~~L~~ 392 (394)
T 4fs7_A 344 SLSNINFPLSLRKIGANA-FQGCINLKKVELPKRLEQY--RYDFEDTTKFKW 392 (394)
T ss_dssp TCCEECCCTTCCEECTTT-BTTCTTCCEEEEEGGGGGG--GGGBCTTCEEEE
T ss_pred CCCEEEECccccEehHHH-hhCCCCCCEEEECCCCEEh--hheecCCCCCcE
Confidence 9999888543 1122222 3678888888732 22221 223457777765
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=64.33 E-value=0.83 Score=43.67 Aligned_cols=102 Identities=13% Similarity=0.259 Sum_probs=54.6
Q ss_pred HhCCCCcEEEE--eecHHHHHHHHhcCCCCCEEEecCC-CCCcHHHHHHHHhcCCCCcEeeCCCc-cccchhhhhccCcc
Q 018571 136 QMCKSLKAVDI--RITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILKPKLNDVEGDSW-EELVNTDIGHGAQS 211 (354)
Q Consensus 136 ~~C~~L~~LdL--~ITd~gl~~La~~Cp~Le~L~L~gC-~~ItD~sL~~La~~cp~L~~L~ls~~-~~td~~~i~~~~~~ 211 (354)
..|.+|+.+++ .++.-|-.++ .+|++|+.+.+..- ..+.+.+ -.+|.+|+.+.+... .....+. -.+|.+
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF-~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a-F~~C~~ 335 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAF-MNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDDA-FAGCEQ 335 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTT-TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTT-TTTCTT
T ss_pred eecccccEEecccccceecCccc-ccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHhH-hhCCCC
Confidence 45788888877 2221111122 36888888887532 2333332 235888888877431 1112221 256778
Q ss_pred cccccc-CCCCHHHHHHHHhcCCcceecCCCCceeecCCC
Q 018571 212 LRWFVW-PNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 250 (354)
Q Consensus 212 L~~L~C-~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~gC~ 250 (354)
|+.+.- .+|+.-+-. .-.+|++|+. +.+.+..
T Consensus 336 L~~i~ip~sv~~I~~~-aF~~C~~L~~------i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSSVTKIPES-AFSNCTALNN------IEYSGSR 368 (394)
T ss_dssp CCEEEECTTCCBCCGG-GGTTCTTCCE------EEESSCH
T ss_pred CCEEEECcccCEEhHh-HhhCCCCCCE------EEECCce
Confidence 887762 233322211 2357888888 7776643
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=64.04 E-value=0.57 Score=43.65 Aligned_cols=82 Identities=10% Similarity=-0.013 Sum_probs=48.5
Q ss_pred CCccEEEeec-CCCCHHHHHHHHHhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCCCCCcHHHHHHHHhcCCCC
Q 018571 114 SSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 189 (354)
Q Consensus 114 ~~L~~LdLs~-C~ITD~gL~~la~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC~~ItD~sL~~La~~cp~L 189 (354)
++|+.|+|++ +.++...-..+ ..+++|+.|+| .|+.--- ....++++|++|+|++.. ++.-. ..+....+ |
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~~~-L 105 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNA-LESLS-WKTVQGLS-L 105 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSC-CSCCC-STTTCSCC-C
T ss_pred CCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCCc-cceeC-HHHcccCC-c
Confidence 6899999997 66653322222 34899999999 3332110 112478999999999864 22110 01122233 8
Q ss_pred cEeeCCCcccc
Q 018571 190 NDVEGDSWEEL 200 (354)
Q Consensus 190 ~~L~ls~~~~t 200 (354)
+.|++.+....
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 89988765543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=52.17 E-value=2.2 Score=40.21 Aligned_cols=93 Identities=17% Similarity=0.085 Sum_probs=41.2
Q ss_pred CCccEEEeecC--CCCHHHHHHHHHhCCCCcEEEE--eecHHHHHHHHhcCCCCCEEEecCC-CCCcHHHHHHHHhcCCC
Q 018571 114 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDI--RITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILKPK 188 (354)
Q Consensus 114 ~~L~~LdLs~C--~ITD~gL~~la~~C~~L~~LdL--~ITd~gl~~La~~Cp~Le~L~L~gC-~~ItD~sL~~La~~cp~ 188 (354)
.+++.+.+... .+.+.. ...|.+|+.+++ .|+.-|-.+. .+|.+|+.+.+..- ..+.+. .-.+|++
T Consensus 217 ~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp~~v~~I~~~aF-~~~~~l~~i~l~~~i~~i~~~----aF~~c~~ 287 (379)
T 4h09_A 217 KNLKKITITSGVTTLGDGA----FYGMKALDEIAIPKNVTSIGSFLL-QNCTALKTLNFYAKVKTVPYL----LCSGCSN 287 (379)
T ss_dssp SSCSEEECCTTCCEECTTT----TTTCSSCCEEEECTTCCEECTTTT-TTCTTCCEEEECCCCSEECTT----TTTTCTT
T ss_pred cccceeeeccceeEEcccc----ccCCccceEEEcCCCccEeCcccc-ceeehhccccccccceecccc----ccccccc
Confidence 45666666543 222221 223667777766 2222111111 35666666666421 111111 1134666
Q ss_pred CcEeeCCCccccc--hhhhhccCccccccc
Q 018571 189 LNDVEGDSWEELV--NTDIGHGAQSLRWFV 216 (354)
Q Consensus 189 L~~L~ls~~~~td--~~~i~~~~~~L~~L~ 216 (354)
|+.+.+....+.. .+. -.+|.+|+.+.
T Consensus 288 L~~i~l~~~~i~~I~~~a-F~~c~~L~~i~ 316 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRV-FMDCVKLSSVT 316 (379)
T ss_dssp CCEEEECCTTCCEECTTT-TTTCTTCCEEE
T ss_pred cccccccccccceehhhh-hcCCCCCCEEE
Confidence 6666554332221 221 24455666555
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=42.33 E-value=1.8 Score=40.77 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=6.0
Q ss_pred cCCCCCEEEec
Q 018571 159 HCHSLETLRCG 169 (354)
Q Consensus 159 ~Cp~Le~L~L~ 169 (354)
+|..|+.+.+.
T Consensus 238 ~~~~L~~i~lp 248 (379)
T 4h09_A 238 GMKALDEIAIP 248 (379)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEcC
Confidence 45555555553
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=41.87 E-value=9.9 Score=36.02 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=59.7
Q ss_pred HhCCCCcEEEE---eecHHHHHHHHhcCCCCCEEEecCC-CCCcHHHHHHHHhcCCCCcEeeCCCc-cccchhhhhccCc
Q 018571 136 QMCKSLKAVDI---RITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILKPKLNDVEGDSW-EELVNTDIGHGAQ 210 (354)
Q Consensus 136 ~~C~~L~~LdL---~ITd~gl~~La~~Cp~Le~L~L~gC-~~ItD~sL~~La~~cp~L~~L~ls~~-~~td~~~i~~~~~ 210 (354)
..|.+|+.+.+ .|.+. ...+|.+|+.+.+... ..|.+.+ -.+|.+|+.+++... .....+. -.+|.
T Consensus 273 ~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a-F~~c~ 343 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYLVEEIGKRS-FRGCT 343 (394)
T ss_dssp TTCTTCCEEEECSSEECTT----TTTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTT-TTTCT
T ss_pred ccccccceeccCceeeccc----cccccccccccccccccceechhh----hcCCCCCCEEEeCCcccEEhHHh-ccCCC
Confidence 45999999988 44332 2358999999999642 3344432 236999999988532 2222222 35788
Q ss_pred ccccccc-CCCCHHHHHHHHhcCCcceecCCCCceeec
Q 018571 211 SLRWFVW-PNIDKDSIEMMSTECPRIIVNPKPSPFGFR 247 (354)
Q Consensus 211 ~L~~L~C-~~ITD~~l~~L~~~Cp~L~~~p~~~~L~l~ 247 (354)
+|+.+.- .+|+.-+-. .-.+|++|+. +.+.
T Consensus 344 ~L~~i~lp~~l~~I~~~-aF~~C~~L~~------i~lp 374 (394)
T 4fs7_A 344 SLSNINFPLSLRKIGAN-AFQGCINLKK------VELP 374 (394)
T ss_dssp TCCEECCCTTCCEECTT-TBTTCTTCCE------EEEE
T ss_pred CCCEEEECccccEehHH-HhhCCCCCCE------EEEC
Confidence 9998872 234322212 2368999998 7763
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.74 E-value=12 Score=29.27 Aligned_cols=11 Identities=36% Similarity=0.534 Sum_probs=5.1
Q ss_pred cCCCCCEEEec
Q 018571 159 HCHSLETLRCG 169 (354)
Q Consensus 159 ~Cp~Le~L~L~ 169 (354)
+|.+|+.+.+.
T Consensus 41 ~C~~L~~i~~~ 51 (100)
T 2lz0_A 41 GCTALEKLILT 51 (100)
T ss_dssp TCTTCCCEEEC
T ss_pred ccCCccEEEEc
Confidence 34444444443
Done!