BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018572
         (354 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii)
 pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii)
 pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii)
 pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii)
          Length = 415

 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 78  VRIAQCGYEYE------QSYAFLPLLPAFTHLLSRSVLAPLIGVIG---YRAVLGLAGYI 128
           +++ Q GY YE      + + F PL P  T   + +  +P+  +I          +   +
Sbjct: 224 LKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDM 283

Query: 129 VSNVAFLFAAVYFY 142
             N AFLFAA+++Y
Sbjct: 284 RVNPAFLFAAMFWY 297


>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I)
          Length = 414

 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 78  VRIAQCGYEYE------QSYAFLPLLPAFTHLLSRSVLAPLIGVIG---YRAVLGLAGYI 128
           +++ Q GY YE      + + F PL P  T   + +  +P+  +I          +   +
Sbjct: 223 LKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDM 282

Query: 129 VSNVAFLFAAVYFY 142
             N AFLFAA+++Y
Sbjct: 283 RVNPAFLFAAMFWY 296


>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii)
 pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii)
          Length = 415

 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 78  VRIAQCGYEYE------QSYAFLPLLPAFTHLLSRSVLAPLIGVIG---YRAVLGLAGYI 128
           +++ Q GY YE      + + F PL P  T   + +  +P+  +I          +   +
Sbjct: 224 LKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDM 283

Query: 129 VSNVAFLFAAVYFY 142
             N AFLFAA+++Y
Sbjct: 284 RVNPAFLFAAMFWY 297


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,527,537
Number of Sequences: 62578
Number of extensions: 352017
Number of successful extensions: 1055
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 3
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)