Query 018572
Match_columns 354
No_of_seqs 182 out of 562
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 96.3 0.075 2.6E-06 56.5 15.7 134 69-213 52-199 (724)
2 5hpg_A Plasminogen; serine pro 14.7 59 0.002 24.5 1.3 19 268-286 49-67 (84)
3 1i71_A APO(A), apolipoprotein( 14.3 61 0.0021 24.4 1.3 20 268-288 48-67 (83)
4 1pml_A Tissue plasminogen acti 12.8 66 0.0022 24.4 1.0 18 267-285 51-68 (86)
5 3k65_A Prothrombin; coagulatio 11.7 80 0.0027 25.5 1.3 22 267-288 60-81 (116)
6 1jfn_A APO(A) KIV-T6, apolipop 11.7 78 0.0027 25.7 1.2 28 268-300 71-98 (119)
7 3e6p_L Prothrombin; meizothrom 10.7 88 0.003 26.7 1.3 22 267-288 53-74 (158)
8 2k4r_A Neurotrypsin; kringle d 10.1 37 0.0013 25.3 -1.2 20 268-288 44-63 (77)
9 2qj2_A Hepatocyte growth facto 9.9 99 0.0034 27.0 1.4 22 267-288 148-169 (184)
10 1nl1_A Prothrombin; hydrolase; 8.9 1.1E+02 0.0039 25.5 1.3 22 267-288 111-132 (147)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=96.29 E-value=0.075 Score=56.47 Aligned_cols=134 Identities=14% Similarity=-0.004 Sum_probs=90.6
Q ss_pred cccccHHHHHHHhhc---ccCcc-ccccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018572 69 SIVWDSVYFVRIAQC---GYEYE-QSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRL 144 (354)
Q Consensus 69 l~~WDa~~F~~IA~~---GY~~e-~~~AFfPl~P~lvr~l~~~~~~~l~~~~~~~~~~~~ag~lvs~i~~~~a~~~Ly~L 144 (354)
+..=|+-|+.+-|++ |...+ ..-.+-|+++.++..++..++ . ....+++.+..+...++++..|.+
T Consensus 52 ~~~~D~yy~~r~ar~~l~~~~~p~~~~p~g~~~~~l~a~l~~i~g--~--------sl~~v~~~lp~ifg~L~vi~~yll 121 (724)
T 3rce_A 52 ITTNDGYAFAEGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSILP--F--------SFESIILYMSTFFASLIVVPIILI 121 (724)
T ss_dssp CSCHHHHHHHHHHHHHHHSCCCTTSCCCTTCHHHHHHHHHHHSCS--S--------CHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHcC--C--------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999988763 43322 123456788888888877642 1 134566777778888889999999
Q ss_pred HHHHhCChhHHHHHHHHHHHcchhHHHhh-h--chHHHHHHHHHHHHHHH---Hhcc----hHHHHHHHHHHHhhcchh
Q 018572 145 SVMILKDPDAALCASLLFCFNPASIFYTS-I--YSESLYALFSVGGLYYL---MSGA----LNISVLWLAISGCARSNG 213 (354)
Q Consensus 145 ~~~~~~~~~~A~~aall~~~~Pasif~sa-~--YtEslF~~ls~~gl~~~---~~~~----~~~A~l~~~lA~~~RsnG 213 (354)
++++. +++.+..|+++.++.|+-+.=|. + -+|++..++...+++++ .+++ ..++++..++...+-..|
T Consensus 122 ~~el~-~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~gg 199 (724)
T 3rce_A 122 AREYK-LTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSS 199 (724)
T ss_dssp HHHTT-CHHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHc-CchHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcch
Confidence 98876 68899999999999999654443 3 36665555444444444 3322 135677777777888877
No 2
>5hpg_A Plasminogen; serine protease, kringle 5, fibrinolysis; 1.66A {Homo sapiens} SCOP: g.14.1.1 PDB: 2knf_A
Probab=14.70 E-value=59 Score=24.46 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=12.5
Q ss_pred hhccCCCCCCCCCCcccCC
Q 018572 268 FNMCLGRSPDEMRPWCKAK 286 (354)
Q Consensus 268 ~~fC~~~~~~~~~pWC~~~ 286 (354)
..||...+.++.+|||--+
T Consensus 49 ~NyCRNPdgd~~~PWCyt~ 67 (84)
T 5hpg_A 49 KNYCRNPDGDVGGPWCYTT 67 (84)
T ss_dssp TTCCBCTTCCTTCCEEEBS
T ss_pred cccccCCCCCCCCCEeEEC
Confidence 5789765444458999543
No 3
>1i71_A APO(A), apolipoprotein(A); alipoprotein(A), kringle, protein-ligand interaction, lysine binding, hydrolase; 1.45A {Homo sapiens} SCOP: g.14.1.1 PDB: 1kiv_A 3kiv_A 4kiv_A 1krn_A 1pmk_A 2pk4_A 1pk4_A
Probab=14.33 E-value=61 Score=24.41 Aligned_cols=20 Identities=35% Similarity=0.916 Sum_probs=13.6
Q ss_pred hhccCCCCCCCCCCcccCCCC
Q 018572 268 FNMCLGRSPDEMRPWCKAKVP 288 (354)
Q Consensus 268 ~~fC~~~~~~~~~pWC~~~~P 288 (354)
.+||...+.+ .+|||--+-|
T Consensus 48 ~NyCRNPdg~-~~PWCyt~d~ 67 (83)
T 1i71_A 48 RNYCRNPDAE-IRPWCYTMDP 67 (83)
T ss_dssp TTCCBCSSSC-SSCEEEBSST
T ss_pred cccccCCCCC-CCCceEeCCC
Confidence 6799755444 5899975544
No 4
>1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A
Probab=12.79 E-value=66 Score=24.35 Aligned_cols=18 Identities=33% Similarity=0.922 Sum_probs=12.5
Q ss_pred hhhccCCCCCCCCCCcccC
Q 018572 267 YFNMCLGRSPDEMRPWCKA 285 (354)
Q Consensus 267 Y~~fC~~~~~~~~~pWC~~ 285 (354)
-.+||...+.+ .+|||--
T Consensus 51 ~~NyCRNPdg~-~~PWCyt 68 (86)
T 1pml_A 51 KHNYCRNPDGD-AKPWCHV 68 (86)
T ss_dssp SSCCCBCSSCC-SSCEEEE
T ss_pred cCccccCCCCC-CCCceEe
Confidence 47899765444 4899953
No 5
>3k65_A Prothrombin; coagulation, zymogen, hydrolase; 1.85A {Homo sapiens} PDB: 2hpq_P* 2hpp_P*
Probab=11.73 E-value=80 Score=25.46 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=14.0
Q ss_pred hhhccCCCCCCCCCCcccCCCC
Q 018572 267 YFNMCLGRSPDEMRPWCKAKVP 288 (354)
Q Consensus 267 Y~~fC~~~~~~~~~pWC~~~~P 288 (354)
-.+||...+.+...|||--+-|
T Consensus 60 ~hNYCRNPDgd~~gPWCYt~d~ 81 (116)
T 3k65_A 60 VENFCRNPDGDEEGVWCYVAGK 81 (116)
T ss_dssp CTTCCBCTTCCTTCCEEECSSS
T ss_pred ccccccCCCCCCCCCeeEeCCC
Confidence 3579976544444799965444
No 6
>1jfn_A APO(A) KIV-T6, apolipoprotein A, KIV-T6, apolipoprotein; kringle domain, protein-protein recognition, LP(A), lipid transport; NMR {Homo sapiens} SCOP: g.14.1.1
Probab=11.66 E-value=78 Score=25.70 Aligned_cols=28 Identities=29% Similarity=0.774 Sum_probs=17.6
Q ss_pred hhccCCCCCCCCCCcccCCCCchhHHHHhhccc
Q 018572 268 FNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYCF 300 (354)
Q Consensus 268 ~~fC~~~~~~~~~pWC~~~~P~iYs~VQ~~Y~~ 300 (354)
.+||...+.+ .+|||--+-|. ++-+||.
T Consensus 71 hNYCRNPDgd-~~PWCYt~d~~----~~weyCd 98 (119)
T 1jfn_A 71 RNYCRNPDAE-ISPWCYTMDPN----VRWEYCN 98 (119)
T ss_dssp TTCCBCTTCC-SSCEEEBSSTT----CCEEEBS
T ss_pred CccccCCCCC-CCCceEeCCCC----eeeEecC
Confidence 6799765444 58999755453 4556643
No 7
>3e6p_L Prothrombin; meizothrombin, allostery, linkage, Na+ binding, AC phase, blood coagulation, cleavage on PAIR of basic residue disease mutation; HET: DFK NAG; 2.10A {Homo sapiens} PDB: 1a0h_A*
Probab=10.72 E-value=88 Score=26.67 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=14.1
Q ss_pred hhhccCCCCCCCCCCcccCCCC
Q 018572 267 YFNMCLGRSPDEMRPWCKAKVP 288 (354)
Q Consensus 267 Y~~fC~~~~~~~~~pWC~~~~P 288 (354)
-.+||...+.+..+|||--+-|
T Consensus 53 ~hNYCRNPDgd~~gPWCYt~d~ 74 (158)
T 3e6p_L 53 VENFCRNPDGDEEGVWCYVAGK 74 (158)
T ss_dssp CTTCCBCTTCCTTCCEEECSSS
T ss_pred ccccccCCCCCCCCCeeEeCCC
Confidence 3579976544444799965444
No 8
>2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A
Probab=10.12 E-value=37 Score=25.30 Aligned_cols=20 Identities=30% Similarity=0.708 Sum_probs=13.2
Q ss_pred hhccCCCCCCCCCCcccCCCC
Q 018572 268 FNMCLGRSPDEMRPWCKAKVP 288 (354)
Q Consensus 268 ~~fC~~~~~~~~~pWC~~~~P 288 (354)
.+||...+.+ .+|||--+-|
T Consensus 44 ~NyCRNPdg~-~~PWCyt~~~ 63 (77)
T 2k4r_A 44 HNFCRSPDGA-GRPWCFYRNA 63 (77)
T ss_dssp SCCCEEEETT-TEEEEEEECT
T ss_pred CccccCCCCC-CCCcceecCC
Confidence 6899654444 4899965544
No 9
>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A
Probab=9.95 E-value=99 Score=27.05 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=14.2
Q ss_pred hhhccCCCCCCCCCCcccCCCC
Q 018572 267 YFNMCLGRSPDEMRPWCKAKVP 288 (354)
Q Consensus 267 Y~~fC~~~~~~~~~pWC~~~~P 288 (354)
-.+||...+.++.+|||--+-|
T Consensus 148 ~hNYCRNPDgd~~~PWCYt~d~ 169 (184)
T 2qj2_A 148 QENYCRNPRGEEGGPWCFTSNP 169 (184)
T ss_dssp CTTCCBCSSCCTTCSEEEBSST
T ss_pred CCCcccCCCCCCCCCceEcCCC
Confidence 3679975544434899975544
No 10
>1nl1_A Prothrombin; hydrolase; HET: CGU NAG; 1.90A {Bos taurus} SCOP: g.14.1.1 g.32.1.1 PDB: 2pf2_A* 2pf1_A* 1nl2_A* 2spt_A*
Probab=8.91 E-value=1.1e+02 Score=25.46 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=14.1
Q ss_pred hhhccCCCCCCCCCCcccCCCC
Q 018572 267 YFNMCLGRSPDEMRPWCKAKVP 288 (354)
Q Consensus 267 Y~~fC~~~~~~~~~pWC~~~~P 288 (354)
-.+||...+.+..+|||--+-|
T Consensus 111 ~~NYCRNPd~~~~~PWCYt~d~ 132 (147)
T 1nl1_A 111 RENFCRNPDGSITGPWCYTTSP 132 (147)
T ss_dssp CTTCCBCTTCCTTCSEEEBSST
T ss_pred CCccCcCCCCCCCCCceEeCCC
Confidence 4678865444434899975555
Done!