Query 018573
Match_columns 354
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 10:08:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15297 CKAP2_C: Cytoskeleton 79.6 2.7 5.9E-05 42.2 4.6 49 135-184 139-189 (353)
2 PHA01623 hypothetical protein 47.1 32 0.00069 26.0 3.7 30 169-199 21-50 (56)
3 PF13625 Helicase_C_3: Helicas 42.3 36 0.00078 28.2 3.7 51 153-204 41-92 (129)
4 PF13208 TerB-N: TerB-N 41.3 70 0.0015 28.9 5.7 65 135-203 63-140 (211)
5 KOG2710 Rho GTPase-activating 39.5 19 0.0004 37.0 1.9 91 135-232 44-150 (412)
6 COG2137 OraA Uncharacterized p 37.5 37 0.00079 30.9 3.3 36 171-206 35-71 (174)
7 cd06257 DnaJ DnaJ domain or J- 37.4 23 0.00049 24.2 1.5 50 143-204 6-55 (55)
8 PF00226 DnaJ: DnaJ domain; I 33.7 46 0.00099 23.8 2.7 55 141-207 4-59 (64)
9 PF05960 DUF885: Bacterial pro 31.6 65 0.0014 32.0 4.2 50 131-180 492-549 (549)
10 PF06855 DUF1250: Protein of u 31.0 87 0.0019 22.6 3.8 41 159-199 2-45 (46)
11 smart00271 DnaJ DnaJ molecular 31.0 32 0.0007 24.0 1.5 52 143-205 7-58 (60)
12 PF15101 DUF4557: Domain of un 26.9 30 0.00066 33.1 1.0 42 136-183 64-105 (212)
13 PF04814 HNF-1_N: Hepatocyte n 26.5 48 0.001 30.9 2.2 18 168-185 115-132 (180)
14 PF10148 SCHIP-1: Schwannomin- 25.7 1.1E+02 0.0023 29.8 4.4 48 127-186 96-144 (238)
15 COG1225 Bcp Peroxiredoxin [Pos 25.6 22 0.00047 32.0 -0.2 60 143-203 23-107 (157)
16 PHA01748 hypothetical protein 25.2 1.2E+02 0.0026 23.1 3.8 28 169-197 10-37 (60)
17 KOG1227 Putative methyltransfe 23.9 52 0.0011 33.5 2.0 42 164-205 58-100 (351)
18 PRK07565 dihydroorotate dehydr 23.4 55 0.0012 31.2 2.0 39 170-209 280-320 (334)
19 PRK14137 recX recombination re 23.2 84 0.0018 28.8 3.1 38 170-207 54-92 (195)
20 PRK02506 dihydroorotate dehydr 22.6 69 0.0015 30.6 2.5 22 170-191 282-303 (310)
21 PF11176 DUF2962: Protein of u 22.5 1E+02 0.0023 27.3 3.5 54 129-184 19-83 (155)
22 PRK14136 recX recombination re 21.1 96 0.0021 31.0 3.2 37 170-206 176-213 (309)
23 KOG0144 RNA-binding protein CU 20.7 56 0.0012 34.6 1.6 39 170-208 119-157 (510)
24 PRK14280 chaperone protein Dna 20.5 1E+02 0.0022 30.3 3.2 56 141-209 8-63 (376)
25 TIGR02684 dnstrm_HI1420 probab 20.1 1.4E+02 0.003 24.3 3.5 42 144-186 6-47 (89)
No 1
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=79.61 E-value=2.7 Score=42.23 Aligned_cols=49 Identities=18% Similarity=0.449 Sum_probs=40.0
Q ss_pred hhhhhhhhhhhhhhhccc-hhhhhHHHHHHhcCCCc-hhHHHHHHHHHHHhc
Q 018573 135 SASYWLNQIKYSESVAKH-SISLGFFKLALEAGCEP-QKMRDELKSYARRHN 184 (354)
Q Consensus 135 s~sYWl~qIklaEsv~KH-svslgFFkLAle~~ceP-~~mr~ELk~Y~~Rh~ 184 (354)
-+-||+-+.+|.+.-|.- .| ++.|--|..+|++| +-||.=|-.+|..-.
T Consensus 139 ~aKYWIC~Arl~~~~~~~e~v-i~iyEeAi~agAqPieElR~~l~diL~~k~ 189 (353)
T PF15297_consen 139 LAKYWICLARLEPRTGPIEDV-IAIYEEAILAGAQPIEELRHVLVDILKMKS 189 (353)
T ss_pred HHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHcCCChHHHHHHHHHHHHHhhh
Confidence 368999999999988873 43 56788899999999 999988888877444
No 2
>PHA01623 hypothetical protein
Probab=47.11 E-value=32 Score=26.00 Aligned_cols=30 Identities=23% Similarity=0.562 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHHHhcccchhhHHHHHHHHh
Q 018573 169 PQKMRDELKSYARRHNLSELGETVIDLFERY 199 (354)
Q Consensus 169 P~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y 199 (354)
|..|-.+|..|+..||+. ..|.|.+.++.|
T Consensus 21 deel~~~Ld~y~~~~g~~-rSe~IreAI~~y 50 (56)
T PHA01623 21 DKDLKTRLKVYCAKNNLQ-LTQAIEEAIKEY 50 (56)
T ss_pred CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 367889999999999997 777788877766
No 3
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=42.28 E-value=36 Score=28.15 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHhcCCCchhHHHHHHHHHHHhcc-cchhhHHHHHHHHhchhhh
Q 018573 153 SISLGFFKLALEAGCEPQKMRDELKSYARRHNL-SELGETVIDLFERYNISET 204 (354)
Q Consensus 153 svslgFFkLAle~~ceP~~mr~ELk~Y~~Rh~l-~~l~e~vkel~e~Y~I~e~ 204 (354)
.|+-.=+.-|++.|+.++.|.+-|+.|. +|++ ..+...+.+...+||-+.-
T Consensus 41 rlT~~Sl~~A~~~G~~~e~i~~~L~~~S-~~~lP~~v~~~i~~w~~~~g~v~l 92 (129)
T PF13625_consen 41 RLTPASLWRAASAGLTAEEIIEFLERYS-KNPLPQNVEQSIEDWARRYGRVRL 92 (129)
T ss_pred EECHHHHHHHHHcCCCHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCEEE
Confidence 3444456678999999988888888876 6666 6677777777777775543
No 4
>PF13208 TerB-N: TerB-N
Probab=41.29 E-value=70 Score=28.87 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=51.0
Q ss_pred hhhhhhhhhhhh--hhhccchhhhhHHHHHHhcCCCc-----hhHHHHHHHH------HHHhcccchhhHHHHHHHHhch
Q 018573 135 SASYWLNQIKYS--ESVAKHSISLGFFKLALEAGCEP-----QKMRDELKSY------ARRHNLSELGETVIDLFERYNI 201 (354)
Q Consensus 135 s~sYWl~qIkla--Esv~KHsvslgFFkLAle~~ceP-----~~mr~ELk~Y------~~Rh~l~~l~e~vkel~e~Y~I 201 (354)
.=-+||++++-. +.+.-..|-|=||-|--.-||.- ..|.+|+.+| +.++ +..-..+++.-|+|
T Consensus 63 ~Yf~Wra~~R~g~~~~~~~sYvfLy~YeLe~~igvd~~~~~~~~l~~~~~~~~~~~~~l~~y----~~~w~~d~l~~~~l 138 (211)
T PF13208_consen 63 GYFTWRAQGRKGNYPDTSISYVFLYFYELERRIGVDSPAEGYPKLREEVERYRERDPKLDRY----FRQWLRDYLVYYGL 138 (211)
T ss_pred HHHHHHhccccCCCCCCCCchHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHhcc
Confidence 445899999988 77777777777777766666643 7899999999 8888 77777888888888
Q ss_pred hh
Q 018573 202 SE 203 (354)
Q Consensus 202 ~e 203 (354)
..
T Consensus 139 ~~ 140 (211)
T PF13208_consen 139 DP 140 (211)
T ss_pred ch
Confidence 43
No 5
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=39.53 E-value=19 Score=37.01 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=71.2
Q ss_pred hhhhhhhhhhhhhhhccchhhhhHHHHHHhcCCC-----------c-----hhHHHHHHHHHHHhcccchhhHHHHHHHH
Q 018573 135 SASYWLNQIKYSESVAKHSISLGFFKLALEAGCE-----------P-----QKMRDELKSYARRHNLSELGETVIDLFER 198 (354)
Q Consensus 135 s~sYWl~qIklaEsv~KHsvslgFFkLAle~~ce-----------P-----~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~ 198 (354)
.+.+|...+.+.-.-++-..-+.||.-+++..|. | -.+-+.+-.|+.+|+|...| ||..
T Consensus 44 ~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~G-----IFRv 118 (412)
T KOG2710|consen 44 GAASVDSLRDLKLNQGRVLDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVG-----IFRV 118 (412)
T ss_pred chhhhhhhhhhhhccccccceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeee-----eeec
Confidence 4667888888888888888888888777776433 2 13456788999999997666 8999
Q ss_pred hchhhhhhhhhhcccccCCCCCCCCCCccccccc
Q 018573 199 YNISETLEQLQVSETCSQVPQEGTRSSDDEVHSS 232 (354)
Q Consensus 199 Y~I~e~~EqlqVSet~S~vpeegtrssDd~v~Ss 232 (354)
-|+..-++||| +..+..|.-|++..|.+.+++
T Consensus 119 ~gs~kRvr~L~--~~fd~~p~y~~~~~~~e~~nv 150 (412)
T KOG2710|consen 119 AGSIKRVRQLR--EEFDSPPDYGIDVNDWEDFNV 150 (412)
T ss_pred CCchHHHHHHH--HHhccCccccccccccccccH
Confidence 99999999998 888888888888888886554
No 6
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=37.53 E-value=37 Score=30.88 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhcc-cchhhHHHHHHHHhchhhhhh
Q 018573 171 KMRDELKSYARRHNL-SELGETVIDLFERYNISETLE 206 (354)
Q Consensus 171 ~mr~ELk~Y~~Rh~l-~~l~e~vkel~e~Y~I~e~~E 206 (354)
+-+.||+.||..|+. ...-|.|.+.+..||.++|.+
T Consensus 35 rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~ 71 (174)
T COG2137 35 RSEKELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTR 71 (174)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCcccHHH
Confidence 556899999999998 566777999999999999843
No 7
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=37.42 E-value=23 Score=24.25 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=32.7
Q ss_pred hhhhhhhccchhhhhHHHHHHhcCCCchhHHHHHHHHHHHhcccchhhHHHHHHHHhchhhh
Q 018573 143 IKYSESVAKHSISLGFFKLALEAGCEPQKMRDELKSYARRHNLSELGETVIDLFERYNISET 204 (354)
Q Consensus 143 IklaEsv~KHsvslgFFkLAle~~ceP~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~ 204 (354)
+.|...+...-|--.|.+|++.. .|++...+ ....+.+..|.+.|+|+.|
T Consensus 6 Lgl~~~~~~~~ik~~y~~l~~~~--HPD~~~~~----------~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 6 LGVPPDASDEEIKKAYRKLALKY--HPDKNPDD----------PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHH--CcCCCCCc----------HHHHHHHHHHHHHHHHhcC
Confidence 34456666677778888888876 67554322 3345567788888887754
No 8
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=33.71 E-value=46 Score=23.76 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=39.6
Q ss_pred hhhhhhhhhccchhhhhHHHHHHhcCCCchhH-HHHHHHHHHHhcccchhhHHHHHHHHhchhhhhhh
Q 018573 141 NQIKYSESVAKHSISLGFFKLALEAGCEPQKM-RDELKSYARRHNLSELGETVIDLFERYNISETLEQ 207 (354)
Q Consensus 141 ~qIklaEsv~KHsvslgFFkLAle~~ceP~~m-r~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~~Eq 207 (354)
.-+-|...+...-|-.+|.+|+... .|++. ..+ .+..+.+..|.+.|+|+.+-++
T Consensus 4 ~iLgl~~~~~~~eik~~y~~l~~~~--HPD~~~~~~----------~~~~~~~~~i~~Ay~~L~~~~~ 59 (64)
T PF00226_consen 4 EILGLPPDASDEEIKKAYRRLSKQY--HPDKNSGDE----------AEAEEKFARINEAYEILSDPER 59 (64)
T ss_dssp HHCTSTTTSSHHHHHHHHHHHHHHT--STTTGTSTH----------HHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHCCCCCCCCHHHHHHHHHhhhhcc--ccccchhhh----------hhhhHHHHHHHHHHHHhCCHHH
Confidence 3355666777778888899998877 78442 222 4567778899999999887554
No 9
>PF05960 DUF885: Bacterial protein of unknown function (DUF885); InterPro: IPR010281 This family consists of hypothetical bacterial proteins.; PDB: 3O0Y_B 3U24_A 3IUK_A.
Probab=31.55 E-value=65 Score=31.95 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=35.8
Q ss_pred cccchhhhhhhhhhhhh-------hhccchhhhhHHHHHHhcCCCc-hhHHHHHHHHH
Q 018573 131 NVLSSASYWLNQIKYSE-------SVAKHSISLGFFKLALEAGCEP-QKMRDELKSYA 180 (354)
Q Consensus 131 ~~L~s~sYWl~qIklaE-------sv~KHsvslgFFkLAle~~ceP-~~mr~ELk~Y~ 180 (354)
+.---.+|++++.++-+ ..|..+--..|+...|++|+-| +-|+++|..|+
T Consensus 492 ~Pgq~~sY~~G~l~i~~LR~~a~~~lG~~F~lk~FHd~iL~~G~~Pl~~l~~~v~~~i 549 (549)
T PF05960_consen 492 SPGQALSYKVGYLEILELREEAEEELGDKFDLKEFHDAILSNGPLPLDVLEEEVDEWI 549 (549)
T ss_dssp STTGGGHHHHHHHHHHHHHHHHHHHHGGG--HHHHHHHHHCT-S--HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCHHHHHHHHHhhC
Confidence 45556699999987643 3356666678999999999999 99999999986
No 10
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=31.01 E-value=87 Score=22.55 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=30.3
Q ss_pred HHHHHhcCCCc--hhHHHHHHHHHHHhcc-cchhhHHHHHHHHh
Q 018573 159 FKLALEAGCEP--QKMRDELKSYARRHNL-SELGETVIDLFERY 199 (354)
Q Consensus 159 FkLAle~~ceP--~~mr~ELk~Y~~Rh~l-~~l~e~vkel~e~Y 199 (354)
...|+.=..=| ..-.+||.+|+..|+. .++-+.+++..+.|
T Consensus 2 A~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw~~Y 45 (46)
T PF06855_consen 2 ANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAWSLY 45 (46)
T ss_dssp HHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHHHHH
T ss_pred hhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHHHHh
Confidence 34455555667 4668999999999885 78888899998888
No 11
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=30.99 E-value=32 Score=23.97 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=34.5
Q ss_pred hhhhhhhccchhhhhHHHHHHhcCCCchhHHHHHHHHHHHhcccchhhHHHHHHHHhchhhhh
Q 018573 143 IKYSESVAKHSISLGFFKLALEAGCEPQKMRDELKSYARRHNLSELGETVIDLFERYNISETL 205 (354)
Q Consensus 143 IklaEsv~KHsvslgFFkLAle~~ceP~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~~ 205 (354)
+-|...+...-|--.|.+|++.. .|++.... .....+.+..|.+.|+|+.+-
T Consensus 7 Lgl~~~~~~~~ik~ay~~l~~~~--HPD~~~~~---------~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 7 LGVPRDASLDEIKKAYRKLALKY--HPDKNPGD---------KEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHH--CcCCCCCc---------hHHHHHHHHHHHHHHHHHcCC
Confidence 34455566677778888888876 67543321 233556788889999988763
No 12
>PF15101 DUF4557: Domain of unknown function (DUF4557)
Probab=26.95 E-value=30 Score=33.06 Aligned_cols=42 Identities=24% Similarity=0.468 Sum_probs=34.1
Q ss_pred hhhhhhhhhhhhhhccchhhhhHHHHHHhcCCCchhHHHHHHHHHHHh
Q 018573 136 ASYWLNQIKYSESVAKHSISLGFFKLALEAGCEPQKMRDELKSYARRH 183 (354)
Q Consensus 136 ~sYWl~qIklaEsv~KHsvslgFFkLAle~~ceP~~mr~ELk~Y~~Rh 183 (354)
-+|||....=+++ +++|.||-|-|- .-|.-+++|+++-++|-
T Consensus 64 ha~yl~a~~na~s--~~sV~LGhyVL~----~PP~~lq~eirrkigsf 105 (212)
T PF15101_consen 64 HASYLSAVANAES--KNSVALGHYVLN----TPPECLQKEIRRKIGSF 105 (212)
T ss_pred eHHHHHHHhhhhh--cCCccccceEec----CCHHHHHHHHHHHhccc
Confidence 3699998887766 999999999992 22366999999998886
No 13
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=26.48 E-value=48 Score=30.90 Aligned_cols=18 Identities=28% Similarity=0.879 Sum_probs=14.7
Q ss_pred CchhHHHHHHHHHHHhcc
Q 018573 168 EPQKMRDELKSYARRHNL 185 (354)
Q Consensus 168 eP~~mr~ELk~Y~~Rh~l 185 (354)
.|-+..+|+|.|+.+|.+
T Consensus 115 D~~~VkeeIK~fl~~h~I 132 (180)
T PF04814_consen 115 DPWRVKEEIKAFLQQHNI 132 (180)
T ss_dssp -HHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHHHHHcCC
Confidence 457889999999999997
No 14
>PF10148 SCHIP-1: Schwannomin-interacting protein 1; InterPro: IPR015649 SCHIP-1 is a coiled-coil protein that specifically associates with schwannomin in vitro and in vivo. The product of the neurofibromatosis type 2 (NF2) tumour suppressor gene, known as schwannomin or merlin, is involved in NF2-associated and sporadic schwannomas and meningiomas. It is closely related to the ezrin-radixin-moesin family members, which link membrane proteins to the cytoskeleton. Association with SCHIP-1 can be observed only with some naturally occurring mutants of schwannomin, or a schwannomin spliced isoform lacking exons 2 and 3, but not with the schwannomin isoform exhibiting growth-suppressive activity []. This entry consists of mammalian SCHIP-1 proteins from Mus musculus (Mouse) and Homo sapiens (Human).
Probab=25.70 E-value=1.1e+02 Score=29.79 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=32.6
Q ss_pred cccccccchhhhhhhhhhhhhhhccchhhhhHHHHHHhcCCCc-hhHHHHHHHHHHHhccc
Q 018573 127 RKKFNVLSSASYWLNQIKYSESVAKHSISLGFFKLALEAGCEP-QKMRDELKSYARRHNLS 186 (354)
Q Consensus 127 r~kf~~L~s~sYWl~qIklaEsv~KHsvslgFFkLAle~~ceP-~~mr~ELk~Y~~Rh~l~ 186 (354)
...++. ....||-.|.||-+-| |+|| +++.+ .+|+.|+..+..-|...
T Consensus 96 ~~~~~s-~~~df~~~Q~kLQ~EA----------RmaL-aqAke~ArMQmEver~~~~~~~s 144 (238)
T PF10148_consen 96 EEDIDS-DDNDFLEKQAKLQEEA----------RMAL-AQAKEMARMQMEVERQQRIHKKS 144 (238)
T ss_pred ccccch-hhHHHHHHHHHHHHHH----------HHHH-HHhHHHHHHHHHHHHHHHhhcCC
Confidence 333433 3447999999996532 3444 45677 99999999998866543
No 15
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.63 E-value=22 Score=32.00 Aligned_cols=60 Identities=27% Similarity=0.466 Sum_probs=47.7
Q ss_pred hhhhhhhccchhhhhHHHHHHhcCCCc--hhHHHHH---------------------HHHHHHhcc--cchhhHHHHHHH
Q 018573 143 IKYSESVAKHSISLGFFKLALEAGCEP--QKMRDEL---------------------KSYARRHNL--SELGETVIDLFE 197 (354)
Q Consensus 143 IklaEsv~KHsvslgFFkLAle~~ceP--~~mr~EL---------------------k~Y~~Rh~l--~~l~e~vkel~e 197 (354)
|.|+.--|| .|-|-||-.|+=.||-. ..+|+.+ +.|..+|+| .-|-+...+|.+
T Consensus 23 v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~ 101 (157)
T COG1225 23 VSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAE 101 (157)
T ss_pred EehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHH
Confidence 889999999 88899999999999998 6666654 556777776 566677778888
Q ss_pred Hhchhh
Q 018573 198 RYNISE 203 (354)
Q Consensus 198 ~Y~I~e 203 (354)
.||+..
T Consensus 102 ~ygv~~ 107 (157)
T COG1225 102 AYGVWG 107 (157)
T ss_pred HhCccc
Confidence 888654
No 16
>PHA01748 hypothetical protein
Probab=25.17 E-value=1.2e+02 Score=23.06 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHhcccchhhHHHHHHH
Q 018573 169 PQKMRDELKSYARRHNLSELGETVIDLFE 197 (354)
Q Consensus 169 P~~mr~ELk~Y~~Rh~l~~l~e~vkel~e 197 (354)
|+.|-+||..|+.+||+. -.|.+.+.++
T Consensus 10 p~el~~eld~~a~~~g~~-RSE~Ir~Ai~ 37 (60)
T PHA01748 10 EEDLLELLDRYAIKHGLN-RSEAIRKAIE 37 (60)
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 578899999999999983 4555555555
No 17
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=23.86 E-value=52 Score=33.53 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=35.4
Q ss_pred hcCCCc-hhHHHHHHHHHHHhcccchhhHHHHHHHHhchhhhh
Q 018573 164 EAGCEP-QKMRDELKSYARRHNLSELGETVIDLFERYNISETL 205 (354)
Q Consensus 164 e~~ceP-~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~~ 205 (354)
..+|.| ++|++++++|+.-.++..+.|...+|=..|.|..++
T Consensus 58 ~~s~S~~ekm~~~v~~~~~~k~~~~~sEl~~~LP~kw~~~g~l 100 (351)
T KOG1227|consen 58 HQSNSPTEKMKEDVKRHVLQKGLIFLSELQDDLPLKWEIYGPL 100 (351)
T ss_pred hhccCcHHHHHHHHHHHHHhcCccchHhhhhhccccceecCCE
Confidence 357899 999999999999999987777677888888877765
No 18
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=23.36 E-value=55 Score=31.17 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHhcccchhhHHHHHHHHhchhh--hhhhhh
Q 018573 170 QKMRDELKSYARRHNLSELGETVIDLFERYNISE--TLEQLQ 209 (354)
Q Consensus 170 ~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e--~~Eqlq 209 (354)
++|.+||+.|+.+||+..+.| ++-++-..|+.. .++.+|
T Consensus 280 ~~i~~~L~~~l~~~g~~~i~e-~~g~~~~~~~~~~~~~~~~~ 320 (334)
T PRK07565 280 GTILRGLEDWMERHGYESLQQ-FRGSMSQKNVPDPAAFERAQ 320 (334)
T ss_pred HHHHHHHHHHHHHcCCCCHHH-HhcccccccCCChhhhHHHH
Confidence 789999999999999988887 333444444432 244444
No 19
>PRK14137 recX recombination regulator RecX; Provisional
Probab=23.22 E-value=84 Score=28.81 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHhcc-cchhhHHHHHHHHhchhhhhhh
Q 018573 170 QKMRDELKSYARRHNL-SELGETVIDLFERYNISETLEQ 207 (354)
Q Consensus 170 ~~mr~ELk~Y~~Rh~l-~~l~e~vkel~e~Y~I~e~~Eq 207 (354)
.+=..||+.||.++++ .+.-+.|.+-+..||.++|..=
T Consensus 54 ~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~gyLDD~rf 92 (195)
T PRK14137 54 AMTAAELRAKLERRSEDEALVTEVLERVQELGYQDDAQV 92 (195)
T ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 3446799999999998 6777888888999999988543
No 20
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=22.61 E-value=69 Score=30.58 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHhcccchhhH
Q 018573 170 QKMRDELKSYARRHNLSELGET 191 (354)
Q Consensus 170 ~~mr~ELk~Y~~Rh~l~~l~e~ 191 (354)
.+|.+||..|+.+||+..++|-
T Consensus 282 ~~i~~~L~~~l~~~g~~si~e~ 303 (310)
T PRK02506 282 ERLTKELKAIMAEKGYQSLEDF 303 (310)
T ss_pred HHHHHHHHHHHHHhCCCCHHHH
Confidence 8999999999999999888873
No 21
>PF11176 DUF2962: Protein of unknown function (DUF2962); InterPro: IPR021346 This eukaryotic family of proteins has no known function. ; PDB: 2KKM_A.
Probab=22.50 E-value=1e+02 Score=27.25 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=25.0
Q ss_pred cccccchhhhhhhhhhhhhhhccchh-------hhhHHHHHHhc-CCCc---hhHHHHHHHHHHHhc
Q 018573 129 KFNVLSSASYWLNQIKYSESVAKHSI-------SLGFFKLALEA-GCEP---QKMRDELKSYARRHN 184 (354)
Q Consensus 129 kf~~L~s~sYWl~qIklaEsv~KHsv-------slgFFkLAle~-~ceP---~~mr~ELk~Y~~Rh~ 184 (354)
||..|.-+. +-+.||+.....|.. -+.||.-++.. +..| .-|++=+..|+.||.
T Consensus 19 kakqL~ra~--~R~~kl~~~k~~~~~k~~~~~~r~~wFq~~i~~~~~~~~t~~e~~~lI~~yl~R~D 83 (155)
T PF11176_consen 19 KAKQLARAT--LRDEKLEKKKKERNKKKNPELERLKWFQEAIDEKDKKPFTLEEIHELIERYLHRFD 83 (155)
T ss_dssp ---------------SS-----SS----HHHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHhcCH
Confidence 555555543 445555555554432 35799999999 6666 788888889999993
No 22
>PRK14136 recX recombination regulator RecX; Provisional
Probab=21.09 E-value=96 Score=31.03 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHhcc-cchhhHHHHHHHHhchhhhhh
Q 018573 170 QKMRDELKSYARRHNL-SELGETVIDLFERYNISETLE 206 (354)
Q Consensus 170 ~~mr~ELk~Y~~Rh~l-~~l~e~vkel~e~Y~I~e~~E 206 (354)
.+=+.||..||.++++ .+.-+.|.+-|..||+++|..
T Consensus 176 eRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeR 213 (309)
T PRK14136 176 EYSRAELARKLAPYADESDSVEPLLDALEREGWLSDAR 213 (309)
T ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHH
Confidence 3456899999999998 567777888899999998844
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=20.72 E-value=56 Score=34.61 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHhcccchhhHHHHHHHHhchhhhhhhh
Q 018573 170 QKMRDELKSYARRHNLSELGETVIDLFERYNISETLEQL 208 (354)
Q Consensus 170 ~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~~Eql 208 (354)
.|+-+|-|-|++--.----+.+|.+||-.||++||+-=|
T Consensus 119 er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 119 ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred hccccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 455568999998666555677799999999999996443
No 24
>PRK14280 chaperone protein DnaJ; Provisional
Probab=20.46 E-value=1e+02 Score=30.34 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=40.6
Q ss_pred hhhhhhhhhccchhhhhHHHHHHhcCCCchhHHHHHHHHHHHhcccchhhHHHHHHHHhchhhhhhhhh
Q 018573 141 NQIKYSESVAKHSISLGFFKLALEAGCEPQKMRDELKSYARRHNLSELGETVIDLFERYNISETLEQLQ 209 (354)
Q Consensus 141 ~qIklaEsv~KHsvslgFFkLAle~~ceP~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~~Eqlq 209 (354)
.-+-|...|...-|-.+|.+||+.. -|++- ...+.++.+++|.+-|.|+-|-++=+
T Consensus 8 ~iLgv~~~a~~~eik~ayr~la~~~--HpD~~-----------~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (376)
T PRK14280 8 EVLGVSKSASKDEIKKAYRKLSKKY--HPDIN-----------KEEGADEKFKEISEAYEVLSDDQKRA 63 (376)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHH--CcCCC-----------CCccHHHHHHHHHHHHHHhccHhHHH
Confidence 3455667788888999999999987 78531 11234667899999999998866543
No 25
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein. gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module.
Probab=20.11 E-value=1.4e+02 Score=24.27 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=32.8
Q ss_pred hhhhhhccchhhhhHHHHHHhcCCCchhHHHHHHHHHHHhccc
Q 018573 144 KYSESVAKHSISLGFFKLALEAGCEPQKMRDELKSYARRHNLS 186 (354)
Q Consensus 144 klaEsv~KHsvslgFFkLAle~~ceP~~mr~ELk~Y~~Rh~l~ 186 (354)
.|.|++-.-....+|..-|||.| +|.-+...|+.+....|++
T Consensus 6 ~~~~~l~~~~~~~~~l~~~le~~-~~~~~~~~l~~~r~~~glS 47 (89)
T TIGR02684 6 DPAEYLKTDEAIAEYLAQALEDG-DPAYIAHALGYIARARGMT 47 (89)
T ss_pred CHHHHcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCChH
Confidence 56777777677789999999998 8877778888776666665
Done!