Query 018573
Match_columns 354
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 17:23:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018573.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018573hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d3ga_ c.1.4.1 (A:) Dihydroor 42.9 5.6 0.00041 34.1 2.4 21 170-190 339-359 (367)
2 d2b4ga1 c.1.4.1 (A:2-313) Dihy 38.5 7.8 0.00057 32.2 2.6 21 170-190 283-303 (312)
3 d1nz6a_ a.2.3.1 (A:) Auxilin J 36.1 8.3 0.00061 28.4 2.1 55 143-207 39-94 (98)
4 d2fcea1 a.39.1.5 (A:84-144) Ca 32.6 14 0.001 23.9 2.6 33 172-204 19-51 (61)
5 d1nrfa_ e.3.1.1 (A:) Penicilli 30.8 15 0.0011 29.9 3.0 43 137-186 84-126 (246)
6 d1juba_ c.1.4.1 (A:) Dihydroor 27.7 15 0.0011 30.0 2.6 21 170-190 283-303 (311)
7 d1topa_ a.39.1.5 (A:) Troponin 26.5 23 0.0017 25.4 3.2 42 163-204 105-146 (162)
8 d1ep3a_ c.1.4.1 (A:) Dihydroor 25.8 27 0.002 28.2 3.8 27 170-196 281-307 (311)
9 d1tiza_ a.39.1.5 (A:) Calmodul 24.0 32 0.0023 22.3 3.2 32 173-204 20-51 (67)
10 d1ic8a2 a.35.1.1 (A:87-180) He 22.2 12 0.00089 28.7 0.9 17 169-185 26-42 (94)
11 d1fw4a_ a.39.1.5 (A:) Calmodul 22.0 36 0.0026 21.9 3.2 32 173-204 22-53 (65)
12 d1fi5a_ a.39.1.5 (A:) Troponin 21.7 32 0.0023 23.2 3.0 42 163-204 24-65 (81)
13 d2hzaa1 a.43.1.3 (A:1-48) Nick 21.3 53 0.0039 21.9 3.9 34 169-202 9-42 (48)
14 d1jc2a_ a.39.1.5 (A:) Troponin 21.2 37 0.0027 22.6 3.2 32 173-204 28-59 (75)
15 d1q46a1 a.60.14.1 (A:89-175) E 21.0 38 0.0028 25.1 3.5 28 155-182 52-86 (87)
16 d2bj7a1 a.43.1.3 (A:1-50) Nick 20.9 48 0.0035 22.3 3.7 33 169-201 11-43 (50)
17 d1tv5a1 c.1.4.1 (A:158-566) Di 20.6 20 0.0015 31.5 2.1 21 170-190 383-403 (409)
18 d1oqpa_ a.39.1.5 (A:) Caltract 20.1 42 0.003 22.1 3.3 33 172-204 27-59 (77)
No 1
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.95 E-value=5.6 Score=34.13 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHhcccchhh
Q 018573 170 QKMRDELKSYARRHNLSELGE 190 (354)
Q Consensus 170 ~~mr~ELk~Y~~Rh~l~~l~e 190 (354)
.+|.+||+.|+.|||+..+.|
T Consensus 339 ~~I~~~L~~~l~~~G~~si~d 359 (367)
T d1d3ga_ 339 GKVKRELEALLKEQGFGGVTD 359 (367)
T ss_dssp HHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 899999999999999988776
No 2
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}
Probab=38.48 E-value=7.8 Score=32.24 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHhcccchhh
Q 018573 170 QKMRDELKSYARRHNLSELGE 190 (354)
Q Consensus 170 ~~mr~ELk~Y~~Rh~l~~l~e 190 (354)
++|.+||.+|+.+||+..+.|
T Consensus 283 ~~i~~~L~~~l~~~G~~si~e 303 (312)
T d2b4ga1 283 ARLNKELQEIMTNKGYKTLDE 303 (312)
T ss_dssp HHHHHHHHHHHHHHTCCSGGG
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 999999999999999988877
No 3
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=36.14 E-value=8.3 Score=28.38 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=40.1
Q ss_pred hhhhhhhccchhhhhHHHHHHhcCCCchhHHHHHHHHHHHhcc-cchhhHHHHHHHHhchhhhhhh
Q 018573 143 IKYSESVAKHSISLGFFKLALEAGCEPQKMRDELKSYARRHNL-SELGETVIDLFERYNISETLEQ 207 (354)
Q Consensus 143 IklaEsv~KHsvslgFFkLAle~~ceP~~mr~ELk~Y~~Rh~l-~~l~e~vkel~e~Y~I~e~~Eq 207 (354)
+-|.+.|...-|--+|++||+.+ -||+.... +. ...++..++|.+.|+|+.|-++
T Consensus 39 Lgl~~~~t~~eIk~aYr~l~~~~--HPDk~~~~--------~~~~~a~~~f~~I~~Ay~~L~d~~~ 94 (98)
T d1nz6a_ 39 VGMADLVTPEQVKKVYRKAVLVV--HPDKATGQ--------PYEQYAKMIFMELNDAWSEFENQGQ 94 (98)
T ss_dssp CCGGGCCSHHHHHHHHHHHHHHS--CHHHHTTS--------TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCccCCHHHHHHHHHHHHHHh--ccccCCCh--------HHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 56788888889999999999987 88753321 11 1134557889999999988653
No 4
>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.55 E-value=14 Score=23.92 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHhchhhh
Q 018573 172 MRDELKSYARRHNLSELGETVIDLFERYNISET 204 (354)
Q Consensus 172 mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~ 204 (354)
-+.||+..+.+.|..--.+.+..|++.|++-.+
T Consensus 19 ~~~el~~~l~~~g~~~~~~ei~~l~~~~D~d~d 51 (61)
T d2fcea1 19 SVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSN 51 (61)
T ss_dssp EHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCTT
T ss_pred eHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCC
Confidence 367899999999986666779999988887654
No 5
>d1nrfa_ e.3.1.1 (A:) Penicillin receptor BlaR, C-terminal domain {Bacillus licheniformis [TaxId: 1402]}
Probab=30.80 E-value=15 Score=29.93 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=35.0
Q ss_pred hhhhhhhhhhhhhccchhhhhHHHHHHhcCCCchhHHHHHHHHHHHhccc
Q 018573 137 SYWLNQIKYSESVAKHSISLGFFKLALEAGCEPQKMRDELKSYARRHNLS 186 (354)
Q Consensus 137 sYWl~qIklaEsv~KHsvslgFFkLAle~~ceP~~mr~ELk~Y~~Rh~l~ 186 (354)
..|-+.+-|.+.. .||.-.+|.+||.+-| .+.|..|+.++|+.
T Consensus 84 ~~~~g~~tl~~al-~~S~N~~~~~l~~~lG------~~~~~~~~~~~G~g 126 (246)
T d1nrfa_ 84 KEWNQDQDLFSAM-SSSTTWYFQKLDRQIG------EDHLRHYLKSIHYG 126 (246)
T ss_dssp TTTSSCBCHHHHH-HHTCHHHHHHHHHHHC------HHHHHHHHHHTTCT
T ss_pred cCCCCCCcHHHhh-hhcccHHHHHHHHhhC------cHHHHHHHHHcCCC
Confidence 3577888887665 5899999999999987 36788899999884
No 6
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}
Probab=27.71 E-value=15 Score=30.02 Aligned_cols=21 Identities=10% Similarity=0.335 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHhcccchhh
Q 018573 170 QKMRDELKSYARRHNLSELGE 190 (354)
Q Consensus 170 ~~mr~ELk~Y~~Rh~l~~l~e 190 (354)
++|.+||+.|+.+||+..+.|
T Consensus 283 ~~i~~~L~~~m~~~G~~si~e 303 (311)
T d1juba_ 283 DRIIKELEEIMNQKGYQSIAD 303 (311)
T ss_dssp HHHHHHHHHHHHHHTCCSGGG
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 899999999999999987776
No 7
>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.51 E-value=23 Score=25.41 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=30.2
Q ss_pred HhcCCCchhHHHHHHHHHHHhcccchhhHHHHHHHHhchhhh
Q 018573 163 LEAGCEPQKMRDELKSYARRHNLSELGETVIDLFERYNISET 204 (354)
Q Consensus 163 le~~ceP~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~ 204 (354)
++..+.-.==..||+.++.+++..-..+.+.+|++.++...+
T Consensus 105 ~D~d~~G~Is~~e~~~~l~~~~~~~~~~~~~~l~~~~D~d~d 146 (162)
T d1topa_ 105 FDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNND 146 (162)
T ss_dssp HCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCS
T ss_pred HCCCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCC
Confidence 344333323357899999999987777889999999987544
No 8
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=25.81 E-value=27 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhcccchhhHHHHHH
Q 018573 170 QKMRDELKSYARRHNLSELGETVIDLF 196 (354)
Q Consensus 170 ~~mr~ELk~Y~~Rh~l~~l~e~vkel~ 196 (354)
.+|.+||..|+.+|++..+.|-+-++-
T Consensus 281 ~~I~~~L~~~m~~~g~~si~e~~g~~k 307 (311)
T d1ep3a_ 281 PKIIDKLPELMDQYRIESLESLIQEVK 307 (311)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 899999999999999987777555543
No 9
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.01 E-value=32 Score=22.27 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHhchhhh
Q 018573 173 RDELKSYARRHNLSELGETVIDLFERYNISET 204 (354)
Q Consensus 173 r~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~ 204 (354)
..||+..+.+.|..--.+.++++++.|+.-.+
T Consensus 20 ~~El~~~l~~lg~~~~~~~i~~~~~~~D~d~d 51 (67)
T d1tiza_ 20 LDEFREVALAFSPYFTQEDIVKFFEEIDVDGN 51 (67)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHhCCCCC
Confidence 46888888888876666779999999887554
No 10
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.22 E-value=12 Score=28.67 Aligned_cols=17 Identities=35% Similarity=0.716 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHhcc
Q 018573 169 PQKMRDELKSYARRHNL 185 (354)
Q Consensus 169 P~~mr~ELk~Y~~Rh~l 185 (354)
|..+.+|+|.|+.+|.+
T Consensus 26 ~~~v~~~IK~Fl~~h~I 42 (94)
T d1ic8a2 26 PWRVAKMVKSYLQQHNI 42 (94)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 36778899999999987
No 11
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.00 E-value=36 Score=21.94 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHhchhhh
Q 018573 173 RDELKSYARRHNLSELGETVIDLFERYNISET 204 (354)
Q Consensus 173 r~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~ 204 (354)
.+||+..+.++|..--.+.+.+++..|+.-.+
T Consensus 22 ~~el~~~l~~lg~~~~~~e~~~l~~~~D~d~~ 53 (65)
T d1fw4a_ 22 AAELRHVMTNLGEKLTDEEVDEMIREADIDGD 53 (65)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCS
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCC
Confidence 57899999999886666778999988876543
No 12
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}
Probab=21.68 E-value=32 Score=23.21 Aligned_cols=42 Identities=10% Similarity=0.103 Sum_probs=29.1
Q ss_pred HhcCCCchhHHHHHHHHHHHhcccchhhHHHHHHHHhchhhh
Q 018573 163 LEAGCEPQKMRDELKSYARRHNLSELGETVIDLFERYNISET 204 (354)
Q Consensus 163 le~~ceP~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~ 204 (354)
++....=.=-.+||+.++..+|..--.+.|.+++..|++-.+
T Consensus 24 ~D~d~~G~I~~~el~~~l~~~g~~~~~~ev~~~~~~~D~d~d 65 (81)
T d1fi5a_ 24 FDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNND 65 (81)
T ss_dssp HCSSCSSEECHHHHHHHHHTSSSCCCHHHHHHHHHHHCSSSS
T ss_pred HcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHCCCCC
Confidence 344333344468899999998875555669999998887544
No 13
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.29 E-value=53 Score=21.92 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHhcccchhhHHHHHHHHhchh
Q 018573 169 PQKMRDELKSYARRHNLSELGETVIDLFERYNIS 202 (354)
Q Consensus 169 P~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~ 202 (354)
|+.|-++|-.++.++|+..=-|.+.+++..|-.-
T Consensus 9 p~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~l~~ 42 (48)
T d2hzaa1 9 DDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQ 42 (48)
T ss_dssp CHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 5788899999999999999899999998876443
No 14
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=21.15 E-value=37 Score=22.65 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHhchhhh
Q 018573 173 RDELKSYARRHNLSELGETVIDLFERYNISET 204 (354)
Q Consensus 173 r~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~ 204 (354)
..||+.++..+|..--.+.+.+++..+++-.+
T Consensus 28 ~~el~~~l~~lg~~~~~~e~~~~~~~~D~d~d 59 (75)
T d1jc2a_ 28 IEELGEILRATGEHVIEEDIEDLMKDSDKNND 59 (75)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHhCCCCC
Confidence 56888888888875556668888888876543
No 15
>d1q46a1 a.60.14.1 (A:89-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.99 E-value=38 Score=25.13 Aligned_cols=28 Identities=39% Similarity=0.683 Sum_probs=22.9
Q ss_pred hhhHHHHHHh-----cCCC-c-hhHHHHHHHHHHH
Q 018573 155 SLGFFKLALE-----AGCE-P-QKMRDELKSYARR 182 (354)
Q Consensus 155 slgFFkLAle-----~~ce-P-~~mr~ELk~Y~~R 182 (354)
+.-+||+|.- .+|+ | ..++++|+.|++|
T Consensus 52 aydaFk~av~dp~vl~~l~~~~~ev~~~L~~~I~r 86 (87)
T d1q46a1 52 AYEAFKLSIIDETVWEGIEPPSKDVLDELKNYISK 86 (87)
T ss_dssp HHHHHHHHHHCGGGGTTCCCSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHccCcCCCHHHHHHHHHHHhc
Confidence 6788999954 4776 5 8999999999986
No 16
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.90 E-value=48 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHHHhcccchhhHHHHHHHHhch
Q 018573 169 PQKMRDELKSYARRHNLSELGETVIDLFERYNI 201 (354)
Q Consensus 169 P~~mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I 201 (354)
|+.|-++|-.++.++|+..=-|.+.|++..|-.
T Consensus 11 p~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~l~ 43 (50)
T d2bj7a1 11 PSKLLEKFDQIIEEIGYENRSEAIRDLIRDFII 43 (50)
T ss_dssp EHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 577889999999999998888889999887643
No 17
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}
Probab=20.57 E-value=20 Score=31.54 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHhcccchhh
Q 018573 170 QKMRDELKSYARRHNLSELGE 190 (354)
Q Consensus 170 ~~mr~ELk~Y~~Rh~l~~l~e 190 (354)
.+|.+||+.|+.+||+..+.|
T Consensus 383 ~~I~~~L~~~l~~~g~~~i~e 403 (409)
T d1tv5a1 383 VQIKRELNHLLYQRGYYNLKE 403 (409)
T ss_dssp HHHHHHHHHHHHHHTCSSSGG
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 899999999999999987776
No 18
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=20.09 E-value=42 Score=22.08 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHhchhhh
Q 018573 172 MRDELKSYARRHNLSELGETVIDLFERYNISET 204 (354)
Q Consensus 172 mr~ELk~Y~~Rh~l~~l~e~vkel~e~Y~I~e~ 204 (354)
-.+||+.++..++..--.+.+.++++.|+.-.+
T Consensus 27 ~~~el~~~l~~~g~~~~~~e~~~~~~~~D~d~~ 59 (77)
T d1oqpa_ 27 TIKDLRRVAKELGENLTEEELQEMIAEADRNDD 59 (77)
T ss_dssp EHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSS
T ss_pred chHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC
Confidence 357888888888875445568888888876543
Done!